Query 000992
Match_columns 1196
No_of_seqs 482 out of 1685
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 05:17:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-42 4.2E-47 445.1 74.7 702 22-1107 15-779 (814)
2 1nr0_A Actin interacting prote 100.0 7.3E-38 2.5E-42 390.6 58.5 435 22-552 20-609 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 6.1E-37 2.1E-41 376.3 64.2 438 22-553 18-497 (577)
4 2ymu_A WD-40 repeat protein; u 100.0 1.1E-35 3.9E-40 365.0 56.7 432 22-551 100-577 (577)
5 3mkq_A Coatomer beta'-subunit; 100.0 3E-34 1E-38 367.3 65.9 685 22-1071 57-804 (814)
6 1nr0_A Actin interacting prote 100.0 3.3E-35 1.1E-39 366.6 53.8 392 22-478 61-609 (611)
7 1pgu_A Actin interacting prote 100.0 4.7E-32 1.6E-36 334.1 53.4 446 1-552 1-612 (615)
8 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-31 7.1E-36 346.7 55.2 464 22-552 19-659 (902)
9 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-31 8.2E-36 357.2 55.9 454 22-553 659-1206(1249)
10 3sfz_A APAF-1, apoptotic pepti 100.0 2.1E-30 7.1E-35 348.1 63.2 426 22-553 617-1115(1249)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-31 6.4E-36 308.3 41.2 293 76-425 17-336 (345)
12 1vyh_C Platelet-activating fac 100.0 1.5E-30 5.1E-35 308.4 40.6 278 75-422 108-409 (410)
13 1got_B GT-beta; complex (GTP-b 100.0 1.9E-30 6.7E-35 299.0 39.9 281 75-421 55-340 (340)
14 2oaj_A Protein SNI1; WD40 repe 100.0 1.4E-30 5E-35 338.7 43.4 433 76-553 18-604 (902)
15 3ow8_A WD repeat-containing pr 100.0 2.4E-30 8.2E-35 296.5 39.8 279 75-423 32-320 (321)
16 4g56_B MGC81050 protein; prote 100.0 9.2E-31 3.2E-35 304.5 33.0 318 27-424 10-343 (357)
17 4gqb_B Methylosome protein 50; 100.0 2.5E-30 8.6E-35 299.9 35.5 286 76-425 31-332 (344)
18 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.4E-29 1.5E-33 288.4 43.4 312 114-479 13-334 (345)
19 2pbi_B Guanine nucleotide-bind 100.0 1.1E-29 3.8E-34 294.9 38.3 284 75-421 64-354 (354)
20 2ynn_A Coatomer subunit beta'; 100.0 2.4E-29 8.3E-34 285.2 40.0 280 75-478 13-300 (304)
21 2hes_X YDR267CP; beta-propelle 100.0 4.4E-29 1.5E-33 286.6 40.8 293 75-424 14-328 (330)
22 2xzm_R RACK1; ribosome, transl 100.0 4.3E-29 1.5E-33 287.8 39.4 294 67-424 17-340 (343)
23 3frx_A Guanine nucleotide-bind 100.0 5.9E-29 2E-33 284.1 40.0 291 67-424 13-317 (319)
24 3ow8_A WD repeat-containing pr 100.0 5.7E-29 1.9E-33 285.1 39.2 277 22-347 34-317 (321)
25 3iz6_a 40S ribosomal protein R 100.0 3.9E-30 1.3E-34 301.3 29.7 293 75-424 66-375 (380)
26 4ery_A WD repeat-containing pr 100.0 2.9E-28 9.8E-33 275.9 42.9 281 75-423 23-311 (312)
27 2pm9_A Protein WEB1, protein t 100.0 3.7E-30 1.3E-34 301.6 26.5 365 22-424 14-414 (416)
28 1pgu_A Actin interacting prote 100.0 1.4E-27 4.9E-32 294.0 50.8 386 22-479 65-613 (615)
29 1gxr_A ESG1, transducin-like e 100.0 3.5E-28 1.2E-32 275.1 40.0 317 22-422 11-335 (337)
30 1r5m_A SIR4-interacting protei 100.0 7E-29 2.4E-33 290.0 34.5 329 76-478 46-423 (425)
31 1vyh_C Platelet-activating fac 100.0 2.2E-28 7.4E-33 289.8 38.6 274 22-346 110-406 (410)
32 4g56_B MGC81050 protein; prote 100.0 2.4E-29 8.2E-34 292.6 29.5 314 83-479 13-342 (357)
33 1got_B GT-beta; complex (GTP-b 100.0 8.2E-28 2.8E-32 277.0 41.6 275 22-346 57-338 (340)
34 1r5m_A SIR4-interacting protei 100.0 4.6E-28 1.6E-32 283.0 39.6 363 22-423 47-424 (425)
35 2hes_X YDR267CP; beta-propelle 100.0 8.5E-28 2.9E-32 275.9 40.1 300 1-346 1-323 (330)
36 3vl1_A 26S proteasome regulato 100.0 2.8E-28 9.7E-33 286.6 36.8 329 23-424 59-419 (420)
37 1gxr_A ESG1, transducin-like e 100.0 8.4E-28 2.9E-32 272.0 39.3 320 76-478 10-335 (337)
38 2j04_A TAU60, YPL007P, hypothe 100.0 3.1E-30 1.1E-34 310.9 20.1 318 22-467 17-350 (588)
39 1erj_A Transcriptional repress 100.0 1.8E-27 6E-32 280.1 41.5 292 75-479 64-388 (393)
40 3vl1_A 26S proteasome regulato 100.0 1.3E-27 4.4E-32 281.0 36.5 329 77-478 58-417 (420)
41 2xzm_R RACK1; ribosome, transl 100.0 2.8E-27 9.6E-32 272.7 38.0 285 22-348 23-337 (343)
42 2ynn_A Coatomer subunit beta'; 100.0 4.4E-27 1.5E-31 266.5 38.5 272 22-342 15-294 (304)
43 3frx_A Guanine nucleotide-bind 100.0 1.1E-26 3.7E-31 265.4 41.9 277 22-348 19-314 (319)
44 2pbi_B Guanine nucleotide-bind 100.0 5.1E-27 1.7E-31 272.5 39.9 275 22-346 66-352 (354)
45 2j04_B YDR362CP, TAU91; beta p 100.0 1.8E-28 6.2E-33 300.0 26.9 302 90-424 176-517 (524)
46 4e54_B DNA damage-binding prot 100.0 4E-29 1.4E-33 297.9 20.5 295 75-424 119-430 (435)
47 4h5i_A Guanine nucleotide-exch 100.0 2E-27 7E-32 277.3 33.4 291 77-424 16-343 (365)
48 3ei3_B DNA damage-binding prot 100.0 1.6E-27 5.5E-32 277.5 32.3 289 75-424 73-382 (383)
49 4aow_A Guanine nucleotide-bind 100.0 4.7E-26 1.6E-30 258.7 43.4 293 67-424 34-337 (340)
50 2pm9_A Protein WEB1, protein t 100.0 2.2E-28 7.4E-33 286.5 23.4 341 77-478 14-412 (416)
51 3dm0_A Maltose-binding peripla 100.0 2.3E-26 7.8E-31 290.8 42.1 246 22-308 384-634 (694)
52 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-26 7.8E-31 264.7 37.3 313 75-424 8-361 (372)
53 3zwl_B Eukaryotic translation 100.0 2E-25 6.8E-30 255.5 44.3 301 22-424 34-346 (369)
54 4gqb_B Methylosome protein 50; 100.0 1.5E-26 5.2E-31 268.1 34.7 242 22-306 84-331 (344)
55 3dwl_C Actin-related protein 2 100.0 4.8E-28 1.6E-32 280.7 20.7 239 76-344 12-274 (377)
56 1erj_A Transcriptional repress 100.0 1.2E-25 4E-30 264.5 40.6 285 22-345 66-383 (393)
57 2pm7_B Protein transport prote 100.0 2.4E-26 8.1E-31 259.6 33.2 250 22-311 11-291 (297)
58 2j04_A TAU60, YPL007P, hypothe 100.0 2.5E-28 8.6E-33 294.3 15.7 264 75-423 15-296 (588)
59 4ery_A WD repeat-containing pr 100.0 2.8E-25 9.7E-30 251.2 40.0 274 22-345 25-306 (312)
60 3gre_A Serine/threonine-protei 100.0 9.1E-27 3.1E-31 276.1 28.3 325 75-476 63-436 (437)
61 4aow_A Guanine nucleotide-bind 100.0 3.9E-25 1.4E-29 251.1 40.6 299 112-479 34-336 (340)
62 3i2n_A WD repeat-containing pr 99.9 1.9E-25 6.6E-30 255.1 37.4 304 75-424 18-353 (357)
63 3odt_A Protein DOA1; ubiquitin 99.9 4.4E-25 1.5E-29 247.3 39.4 277 75-425 18-297 (313)
64 3zwl_B Eukaryotic translation 99.9 6.1E-25 2.1E-29 251.4 39.9 283 75-479 32-345 (369)
65 3iz6_a 40S ribosomal protein R 99.9 1.9E-26 6.4E-31 270.0 27.3 282 22-346 68-370 (380)
66 1k8k_C P40, ARP2/3 complex 41 99.9 2.3E-25 7.9E-30 256.3 35.8 250 22-313 10-283 (372)
67 2pm7_B Protein transport prote 99.9 1.3E-25 4.6E-30 253.5 31.6 256 112-424 5-285 (297)
68 3k26_A Polycomb protein EED; W 99.9 2.7E-25 9.3E-30 254.4 33.8 286 75-423 18-365 (366)
69 3bg1_A Protein SEC13 homolog; 99.9 4.3E-26 1.5E-30 260.0 26.4 254 22-315 15-303 (316)
70 3dw8_B Serine/threonine-protei 99.9 3.1E-25 1.1E-29 262.6 33.9 315 75-422 28-444 (447)
71 3dm0_A Maltose-binding peripla 99.9 8.9E-25 3E-29 276.2 38.7 302 112-478 378-691 (694)
72 1sq9_A Antiviral protein SKI8; 99.9 6.6E-25 2.2E-29 255.5 34.5 303 75-424 16-395 (397)
73 3f3f_A Nucleoporin SEH1; struc 99.9 5.5E-25 1.9E-29 248.3 31.9 295 75-425 11-338 (351)
74 3v7d_B Cell division control p 99.9 1.9E-23 6.5E-28 249.6 45.5 309 78-478 125-461 (464)
75 4h5i_A Guanine nucleotide-exch 99.9 7.2E-25 2.5E-29 255.7 32.4 202 75-305 133-342 (365)
76 4gga_A P55CDC, cell division c 99.9 4.1E-24 1.4E-28 253.2 38.3 277 77-425 107-396 (420)
77 1sq9_A Antiviral protein SKI8; 99.9 4.9E-24 1.7E-28 248.2 38.0 285 22-347 18-391 (397)
78 3ei3_B DNA damage-binding prot 99.9 1.5E-24 5.1E-29 252.4 33.5 274 22-345 75-376 (383)
79 3bg1_A Protein SEC13 homolog; 99.9 6.4E-25 2.2E-29 250.3 29.8 255 112-423 9-292 (316)
80 4aez_A CDC20, WD repeat-contai 99.9 5.7E-24 2E-28 250.2 38.5 278 77-427 95-383 (401)
81 4ggc_A P55CDC, cell division c 99.9 1E-23 3.5E-28 237.0 37.2 276 77-424 27-315 (318)
82 4a11_B DNA excision repair pro 99.9 3.1E-24 1.1E-28 249.4 33.0 285 75-426 43-367 (408)
83 3dwl_C Actin-related protein 2 99.9 1.3E-25 4.5E-30 260.2 21.1 246 22-309 13-284 (377)
84 3dw8_B Serine/threonine-protei 99.9 2.1E-24 7E-29 255.5 31.6 255 22-308 30-375 (447)
85 4aez_A CDC20, WD repeat-contai 99.9 1.9E-23 6.5E-28 245.7 39.2 272 25-345 98-374 (401)
86 3v7d_B Cell division control p 99.9 3.2E-23 1.1E-27 247.6 41.3 324 23-422 125-461 (464)
87 3k26_A Polycomb protein EED; W 99.9 1.7E-23 5.7E-28 239.5 36.2 297 111-478 13-364 (366)
88 3i2n_A WD repeat-containing pr 99.9 1.5E-23 5.2E-28 239.3 35.6 284 22-346 20-348 (357)
89 3gre_A Serine/threonine-protei 99.9 6.5E-24 2.2E-28 251.5 32.5 317 22-421 65-437 (437)
90 3jrp_A Fusion protein of prote 99.9 1.8E-23 6.3E-28 240.4 34.4 248 22-310 13-292 (379)
91 1yfq_A Cell cycle arrest prote 99.9 9.8E-24 3.3E-28 240.1 30.3 277 75-422 11-322 (342)
92 4e54_B DNA damage-binding prot 99.9 3.1E-24 1.1E-28 255.6 26.6 274 22-338 121-418 (435)
93 2ovr_B FBW7, F-BOX/WD repeat p 99.9 3.9E-22 1.3E-26 237.5 43.4 308 82-478 124-440 (445)
94 3jrp_A Fusion protein of prote 99.9 2E-23 6.9E-28 240.0 31.0 257 111-424 6-287 (379)
95 4gga_A P55CDC, cell division c 99.9 7.1E-23 2.4E-27 242.6 36.4 282 118-478 107-393 (420)
96 2aq5_A Coronin-1A; WD40 repeat 99.9 4.8E-24 1.6E-28 250.6 25.9 291 78-424 37-342 (402)
97 4ggc_A P55CDC, cell division c 99.9 1.4E-22 4.6E-27 227.9 36.0 281 119-478 28-313 (318)
98 2aq5_A Coronin-1A; WD40 repeat 99.9 2E-23 6.7E-28 245.3 29.9 271 24-333 38-327 (402)
99 3f3f_A Nucleoporin SEH1; struc 99.9 1.3E-22 4.5E-27 228.8 35.2 257 22-307 13-338 (351)
100 3odt_A Protein DOA1; ubiquitin 99.9 4.3E-22 1.5E-26 222.9 37.8 264 22-345 20-290 (313)
101 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1E-21 3.5E-26 233.8 42.8 308 27-424 124-442 (445)
102 1yfq_A Cell cycle arrest prote 99.9 2.3E-22 7.8E-27 228.8 33.4 275 22-342 13-314 (342)
103 2vdu_B TRNA (guanine-N(7)-)-me 99.9 4.4E-22 1.5E-26 238.0 36.6 225 76-330 103-365 (450)
104 2j04_B YDR362CP, TAU91; beta p 99.9 1.4E-23 4.9E-28 256.7 22.9 281 22-344 209-510 (524)
105 3mmy_A MRNA export factor; mRN 99.9 3.6E-22 1.2E-26 228.2 31.8 280 75-422 39-344 (368)
106 2vdu_B TRNA (guanine-N(7)-)-me 99.9 8.4E-22 2.9E-26 235.5 34.7 198 77-308 6-273 (450)
107 3bws_A Protein LP49; two-domai 99.9 3.6E-21 1.2E-25 227.1 39.7 298 76-424 123-432 (433)
108 4a11_B DNA excision repair pro 99.9 1.9E-21 6.5E-26 225.9 36.5 288 22-346 45-360 (408)
109 2ecf_A Dipeptidyl peptidase IV 99.9 1.3E-21 4.5E-26 248.2 37.9 322 75-469 36-446 (741)
110 1l0q_A Surface layer protein; 99.9 1.7E-20 5.7E-25 218.3 44.1 260 35-345 5-269 (391)
111 3bws_A Protein LP49; two-domai 99.9 7.1E-21 2.4E-25 224.7 39.2 323 77-478 62-430 (433)
112 3lrv_A PRE-mRNA-splicing facto 99.9 2.2E-22 7.5E-27 231.5 25.2 258 27-345 43-327 (343)
113 4gq1_A NUP37; propeller, trans 99.9 5E-22 1.7E-26 233.8 27.0 304 76-478 16-387 (393)
114 3mmy_A MRNA export factor; mRN 99.9 1E-20 3.5E-25 216.1 34.0 272 22-342 41-337 (368)
115 1xfd_A DIP, dipeptidyl aminope 99.9 2.6E-21 8.9E-26 244.6 31.5 335 76-469 17-431 (723)
116 3jro_A Fusion protein of prote 99.9 8.8E-22 3E-26 251.6 25.7 244 22-306 11-285 (753)
117 1p22_A F-BOX/WD-repeat protein 99.9 1.2E-20 4.2E-25 224.2 33.7 271 76-425 134-415 (435)
118 3jro_A Fusion protein of prote 99.9 2.6E-21 8.9E-26 247.2 28.4 258 112-426 5-287 (753)
119 3lrv_A PRE-mRNA-splicing facto 99.9 9.2E-22 3.1E-26 226.3 21.8 279 79-423 40-332 (343)
120 1l0q_A Surface layer protein; 99.9 1.3E-19 4.4E-24 210.8 39.5 267 88-428 3-279 (391)
121 2xyi_A Probable histone-bindin 99.9 2.1E-21 7.2E-26 231.0 24.6 244 75-345 128-404 (430)
122 2xyi_A Probable histone-bindin 99.9 1E-20 3.5E-25 225.0 30.3 246 22-307 130-411 (430)
123 4gq1_A NUP37; propeller, trans 99.9 1.9E-21 6.5E-26 228.8 23.5 251 28-306 97-389 (393)
124 1k32_A Tricorn protease; prote 99.9 1.5E-19 5.1E-24 239.1 44.2 417 22-550 16-498 (1045)
125 2ecf_A Dipeptidyl peptidase IV 99.9 1.3E-20 4.4E-25 239.1 32.0 348 22-424 38-459 (741)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.4E-20 2.5E-24 217.2 32.9 257 32-333 143-411 (415)
127 1nir_A Nitrite reductase; hemo 99.9 1.2E-19 4.2E-24 223.0 35.7 350 26-433 143-523 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 4E-20 1.4E-24 219.5 30.4 307 77-459 64-409 (415)
129 3vu4_A KMHSV2; beta-propeller 99.9 8.4E-20 2.9E-24 211.7 31.4 269 22-349 21-334 (355)
130 3vu4_A KMHSV2; beta-propeller 99.9 6.8E-20 2.3E-24 212.5 30.2 295 75-424 19-336 (355)
131 1p22_A F-BOX/WD-repeat protein 99.8 3.3E-19 1.1E-23 211.9 32.4 228 22-306 135-365 (435)
132 1k32_A Tricorn protease; prote 99.8 2.1E-19 7.3E-24 237.7 33.9 377 22-479 205-636 (1045)
133 2z3z_A Dipeptidyl aminopeptida 99.8 2.9E-19 9.8E-24 225.6 33.0 350 23-425 28-436 (706)
134 2w18_A PALB2, fancn, partner a 99.8 3.6E-19 1.2E-23 203.0 29.0 202 76-304 112-355 (356)
135 1xfd_A DIP, dipeptidyl aminope 99.8 5.4E-20 1.9E-24 232.5 23.4 294 22-338 18-377 (723)
136 1nir_A Nitrite reductase; hemo 99.8 2.4E-18 8.3E-23 211.5 37.2 326 82-478 144-512 (543)
137 1z68_A Fibroblast activation p 99.8 3.4E-19 1.2E-23 225.5 25.9 322 79-467 19-429 (719)
138 2w18_A PALB2, fancn, partner a 99.8 6.2E-18 2.1E-22 192.8 32.6 293 78-478 42-355 (356)
139 2z3z_A Dipeptidyl aminopeptida 99.8 6.1E-18 2.1E-22 213.5 36.1 325 77-478 27-433 (706)
140 2ojh_A Uncharacterized protein 99.8 2.3E-18 7.9E-23 189.8 27.3 254 40-339 20-290 (297)
141 1ri6_A Putative isomerase YBHE 99.8 2.2E-17 7.7E-22 187.0 33.2 273 33-345 5-302 (343)
142 3hfq_A Uncharacterized protein 99.8 3.2E-17 1.1E-21 187.9 34.7 277 76-390 40-342 (347)
143 1ri6_A Putative isomerase YBHE 99.8 3.2E-17 1.1E-21 185.8 33.3 275 90-423 8-307 (343)
144 3o4h_A Acylamino-acid-releasin 99.8 2.4E-18 8.1E-23 212.5 23.6 275 77-423 23-314 (582)
145 3u4y_A Uncharacterized protein 99.8 5.3E-17 1.8E-21 184.2 32.4 288 82-425 4-305 (331)
146 1z68_A Fibroblast activation p 99.8 2.4E-18 8.2E-23 217.7 22.2 258 25-307 20-347 (719)
147 4a5s_A Dipeptidyl peptidase 4 99.8 4.4E-17 1.5E-21 207.6 32.0 206 77-308 18-296 (740)
148 2ojh_A Uncharacterized protein 99.8 1.3E-17 4.5E-22 183.7 22.7 238 22-294 43-293 (297)
149 3vgz_A Uncharacterized protein 99.8 2.7E-16 9.2E-21 179.3 33.7 282 76-415 41-335 (353)
150 3vgz_A Uncharacterized protein 99.8 4.9E-16 1.7E-20 177.2 35.8 265 22-340 42-333 (353)
151 3u4y_A Uncharacterized protein 99.8 1.2E-16 4.2E-21 181.1 30.2 264 26-339 3-291 (331)
152 3hfq_A Uncharacterized protein 99.8 1.3E-16 4.4E-21 182.9 30.4 245 22-305 41-316 (347)
153 4a5s_A Dipeptidyl peptidase 4 99.8 2.6E-17 9E-22 209.7 27.2 265 22-307 18-354 (740)
154 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.1E-15 3.7E-20 177.5 32.1 243 76-345 40-335 (365)
155 2oit_A Nucleoporin 214KDA; NH2 99.7 4.3E-16 1.5E-20 186.1 27.6 213 75-306 36-278 (434)
156 3scy_A Hypothetical bacterial 99.7 6.1E-15 2.1E-19 170.1 36.3 282 85-424 11-337 (361)
157 1pby_B Quinohemoprotein amine 99.7 6.8E-16 2.3E-20 174.3 26.9 262 33-345 2-304 (337)
158 1pby_B Quinohemoprotein amine 99.7 1.2E-15 4E-20 172.4 28.7 274 88-425 2-311 (337)
159 3pe7_A Oligogalacturonate lyas 99.7 4.8E-16 1.6E-20 180.4 24.3 209 81-308 41-275 (388)
160 3scy_A Hypothetical bacterial 99.7 3.1E-14 1E-18 164.2 36.5 283 32-344 13-330 (361)
161 1jof_A Carboxy-CIS,CIS-muconat 99.7 1E-14 3.4E-19 169.4 28.5 252 22-307 41-342 (365)
162 3pe7_A Oligogalacturonate lyas 99.7 1.5E-14 5.2E-19 167.7 29.3 284 26-344 41-375 (388)
163 1jmx_B Amine dehydrogenase; ox 99.7 1.3E-14 4.4E-19 164.8 26.9 233 25-308 4-327 (349)
164 3o4h_A Acylamino-acid-releasin 99.6 1.2E-14 4E-19 179.4 25.7 235 22-304 23-274 (582)
165 3c5m_A Oligogalacturonate lyas 99.6 7.8E-15 2.7E-19 170.0 20.6 240 78-333 38-296 (396)
166 1jmx_B Amine dehydrogenase; ox 99.6 4.9E-14 1.7E-18 160.0 24.9 286 80-425 4-326 (349)
167 2oit_A Nucleoporin 214KDA; NH2 99.6 1.7E-14 6E-19 172.2 20.6 208 22-257 38-276 (434)
168 1q7f_A NHL, brain tumor CG1071 99.6 1.5E-12 5.1E-17 144.9 33.3 244 22-306 31-280 (286)
169 2gop_A Trilobed protease; beta 99.5 4.7E-12 1.6E-16 144.5 33.5 247 22-329 16-311 (347)
170 3c5m_A Oligogalacturonate lyas 99.5 2E-13 6.8E-18 158.1 22.1 276 23-339 38-369 (396)
171 2gop_A Trilobed protease; beta 99.5 2.3E-12 7.8E-17 147.1 29.8 270 76-423 15-330 (347)
172 3azo_A Aminopeptidase; POP fam 99.5 1.9E-12 6.6E-17 161.8 30.8 200 80-305 81-322 (662)
173 3fvz_A Peptidyl-glycine alpha- 99.5 4.4E-12 1.5E-16 145.1 29.6 255 22-305 25-321 (329)
174 3azo_A Aminopeptidase; POP fam 99.5 6.8E-13 2.3E-17 165.9 24.4 220 76-308 24-276 (662)
175 2xdw_A Prolyl endopeptidase; a 99.5 1E-11 3.4E-16 157.4 33.3 234 77-333 126-393 (710)
176 1q7f_A NHL, brain tumor CG1071 99.5 3.9E-11 1.3E-15 133.3 31.7 232 76-344 30-273 (286)
177 3e5z_A Putative gluconolactona 99.5 2E-11 6.9E-16 136.7 28.9 222 22-294 29-278 (296)
178 2dg1_A DRP35, lactonase; beta 99.4 2.5E-11 8.7E-16 137.8 28.7 278 22-342 7-301 (333)
179 2dg1_A DRP35, lactonase; beta 99.4 1.1E-10 3.7E-15 132.6 29.9 231 22-294 46-301 (333)
180 1yr2_A Prolyl oligopeptidase; 99.4 1.1E-10 3.9E-15 148.5 32.7 231 77-333 164-420 (741)
181 3fvz_A Peptidyl-glycine alpha- 99.4 9.9E-11 3.4E-15 133.8 28.9 243 76-344 24-315 (329)
182 2bkl_A Prolyl endopeptidase; m 99.4 2.6E-11 8.8E-16 153.3 26.3 270 29-333 76-376 (695)
183 2oiz_A Aromatic amine dehydrog 99.4 8.5E-11 2.9E-15 136.6 28.6 309 86-460 14-360 (361)
184 1qks_A Cytochrome CD1 nitrite 99.4 6.1E-10 2.1E-14 137.1 37.4 340 28-426 163-540 (567)
185 2xdw_A Prolyl endopeptidase; a 99.4 1E-10 3.6E-15 148.0 30.4 248 22-308 126-416 (710)
186 1rwi_B Serine/threonine-protei 99.3 2.1E-10 7.3E-15 125.7 26.2 237 22-306 25-264 (270)
187 3e5z_A Putative gluconolactona 99.3 3.8E-10 1.3E-14 126.2 28.6 234 76-341 28-277 (296)
188 1qks_A Cytochrome CD1 nitrite 99.3 3.9E-09 1.3E-13 129.9 36.8 329 85-477 165-535 (567)
189 2bkl_A Prolyl endopeptidase; m 99.3 1.1E-10 3.6E-15 147.6 23.3 246 22-308 122-399 (695)
190 3g4e_A Regucalcin; six bladed 99.3 3E-09 1E-13 119.6 31.7 224 22-294 14-263 (297)
191 2oiz_A Aromatic amine dehydrog 99.2 1.5E-09 5.1E-14 126.1 27.8 272 25-332 54-360 (361)
192 2ghs_A AGR_C_1268P; regucalcin 99.2 6.2E-09 2.1E-13 118.9 32.3 223 22-294 50-293 (326)
193 1yr2_A Prolyl oligopeptidase; 99.2 7.8E-10 2.7E-14 140.8 26.6 247 22-308 164-443 (741)
194 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 4.2E-09 1.4E-13 117.9 28.8 238 22-306 19-299 (314)
195 2z2n_A Virginiamycin B lyase; 99.2 8.4E-08 2.9E-12 106.0 38.8 267 22-344 16-288 (299)
196 3iuj_A Prolyl endopeptidase; h 99.2 4.3E-10 1.5E-14 142.1 21.5 229 77-333 130-384 (693)
197 3no2_A Uncharacterized protein 99.1 1.5E-08 5.2E-13 113.2 27.4 221 32-291 5-231 (276)
198 1rwi_B Serine/threonine-protei 99.1 8.9E-09 3.1E-13 112.7 23.9 224 77-339 25-251 (270)
199 2mad_H Methylamine dehydrogena 99.1 2E-07 6.9E-12 108.7 35.6 295 83-426 28-352 (373)
200 3no2_A Uncharacterized protein 99.1 4.7E-09 1.6E-13 117.3 20.6 184 86-306 4-195 (276)
201 3g4e_A Regucalcin; six bladed 99.1 7.7E-08 2.6E-12 108.0 30.8 235 77-340 14-261 (297)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 6.9E-08 2.4E-12 107.9 29.7 237 76-339 18-286 (314)
203 2z2n_A Virginiamycin B lyase; 99.0 2.1E-07 7.1E-12 102.8 32.8 234 22-306 58-295 (299)
204 3dsm_A Uncharacterized protein 99.0 4E-08 1.4E-12 112.3 26.4 236 75-339 43-285 (328)
205 3dr2_A Exported gluconolactona 99.0 4.5E-08 1.5E-12 110.3 25.4 227 22-294 46-298 (305)
206 2qc5_A Streptogramin B lactona 99.0 8E-07 2.7E-11 98.1 35.0 264 22-340 21-290 (300)
207 3dsm_A Uncharacterized protein 99.0 4.4E-08 1.5E-12 111.8 25.0 236 22-305 45-301 (328)
208 3iuj_A Prolyl endopeptidase; h 99.0 3.8E-08 1.3E-12 124.2 25.6 245 22-308 130-407 (693)
209 3dr2_A Exported gluconolactona 99.0 1.3E-07 4.4E-12 106.5 26.9 240 76-340 45-296 (305)
210 3hrp_A Uncharacterized protein 98.9 5.9E-07 2E-11 106.1 32.0 204 76-308 131-356 (409)
211 2ghs_A AGR_C_1268P; regucalcin 98.9 5.5E-07 1.9E-11 102.6 30.7 232 77-339 50-290 (326)
212 1xip_A Nucleoporin NUP159; bet 98.9 5.4E-08 1.8E-12 113.7 22.1 179 22-242 39-233 (388)
213 1xi4_A Clathrin heavy chain; a 98.9 1.1E-07 3.6E-12 123.4 25.6 183 917-1107 1036-1251(1630)
214 2qc5_A Streptogramin B lactona 98.9 4.2E-06 1.4E-10 92.2 35.6 223 76-339 20-247 (300)
215 3hrp_A Uncharacterized protein 98.9 5.4E-07 1.9E-11 106.4 28.3 238 22-304 132-408 (409)
216 2mad_H Methylamine dehydrogena 98.8 3.9E-06 1.3E-10 97.8 34.9 262 27-339 27-337 (373)
217 1xip_A Nucleoporin NUP159; bet 98.8 4.4E-08 1.5E-12 114.4 17.6 178 74-293 36-234 (388)
218 3sjl_D Methylamine dehydrogena 98.8 3.5E-07 1.2E-11 106.6 23.4 296 80-426 37-365 (386)
219 1xi4_A Clathrin heavy chain; a 98.8 6.1E-07 2.1E-11 116.5 26.3 160 935-1102 1109-1305(1630)
220 3sjl_D Methylamine dehydrogena 98.7 1.4E-06 4.9E-11 101.4 26.0 256 22-308 34-365 (386)
221 3c75_H MADH, methylamine dehyd 98.7 4.9E-07 1.7E-11 106.9 22.1 291 85-427 82-405 (426)
222 2qe8_A Uncharacterized protein 98.5 2.8E-05 9.4E-10 89.1 27.0 230 76-331 17-302 (343)
223 2fp8_A Strictosidine synthase; 98.4 7.3E-05 2.5E-09 84.5 28.7 252 22-305 20-312 (322)
224 1b89_A Protein (clathrin heavy 98.4 3.3E-07 1.1E-11 107.8 9.3 232 893-1148 37-277 (449)
225 3c75_H MADH, methylamine dehyd 98.4 1.4E-05 4.9E-10 94.5 23.3 245 22-308 120-404 (426)
226 2qe8_A Uncharacterized protein 98.4 7.8E-06 2.7E-10 93.7 20.4 202 22-242 68-310 (343)
227 2xe4_A Oligopeptidase B; hydro 98.4 6.7E-06 2.3E-10 104.7 21.1 162 77-258 175-353 (751)
228 2ece_A 462AA long hypothetical 98.3 5.3E-05 1.8E-09 89.1 22.5 235 30-291 93-399 (462)
229 3mkq_B Coatomer subunit alpha; 98.2 1.6E-05 5.5E-10 81.7 15.7 100 1003-1108 34-133 (177)
230 4a2l_A BT_4663, two-component 98.2 0.029 9.9E-07 71.5 47.6 366 22-465 216-603 (795)
231 1npe_A Nidogen, entactin; glyc 98.2 0.001 3.5E-08 72.8 29.1 219 22-285 37-263 (267)
232 2ece_A 462AA long hypothetical 98.2 0.00034 1.2E-08 82.3 26.3 211 85-317 93-364 (462)
233 3nol_A Glutamine cyclotransfer 98.1 0.00034 1.2E-08 76.7 24.5 193 67-293 34-245 (262)
234 2xe4_A Oligopeptidase B; hydro 98.1 7.6E-05 2.6E-09 95.0 22.5 169 118-309 175-358 (751)
235 1fwx_A Nitrous oxide reductase 98.1 0.00032 1.1E-08 85.2 25.3 233 30-294 99-409 (595)
236 4a2l_A BT_4663, two-component 98.0 0.0084 2.9E-07 76.5 38.7 244 22-308 311-573 (795)
237 2p4o_A Hypothetical protein; p 98.0 0.002 6.8E-08 72.2 29.0 234 22-294 33-279 (306)
238 1mda_H Methylamine dehydrogena 98.0 0.00015 5.1E-09 84.2 19.9 97 31-142 30-151 (368)
239 1npe_A Nidogen, entactin; glyc 98.0 0.005 1.7E-07 67.1 30.6 200 76-308 36-240 (267)
240 2iwa_A Glutamine cyclotransfer 98.0 0.0009 3.1E-08 73.9 24.2 191 68-293 13-226 (266)
241 3mbr_X Glutamine cyclotransfer 98.0 0.0013 4.3E-08 71.6 24.2 192 67-292 12-223 (243)
242 2iwa_A Glutamine cyclotransfer 97.9 0.001 3.6E-08 73.4 23.2 184 22-243 22-226 (266)
243 2fp8_A Strictosidine synthase; 97.9 0.00063 2.1E-08 76.7 21.5 193 77-292 20-248 (322)
244 3nok_A Glutaminyl cyclase; bet 97.8 0.0011 3.7E-08 72.8 21.1 190 67-292 46-254 (268)
245 1mda_H Methylamine dehydrogena 97.8 0.00012 3.9E-09 85.1 13.7 101 203-306 47-158 (368)
246 3hxj_A Pyrrolo-quinoline quino 97.8 0.001 3.6E-08 74.2 20.9 216 32-304 107-322 (330)
247 2p4o_A Hypothetical protein; p 97.7 0.0079 2.7E-07 67.3 27.4 194 75-305 31-241 (306)
248 3qqz_A Putative uncharacterize 97.7 0.0033 1.1E-07 68.9 23.0 193 22-240 28-241 (255)
249 3tc9_A Hypothetical hydrolase; 97.7 0.0076 2.6E-07 71.3 27.3 240 22-304 138-428 (430)
250 3nol_A Glutamine cyclotransfer 97.7 0.0017 5.9E-08 71.1 19.7 184 22-243 44-245 (262)
251 3mbr_X Glutamine cyclotransfer 97.7 0.0052 1.8E-07 66.7 23.2 184 22-242 22-223 (243)
252 1kb0_A Quinohemoprotein alcoho 97.6 0.0032 1.1E-07 79.0 24.2 248 31-308 127-509 (677)
253 2hz6_A Endoplasmic reticulum t 97.6 1.3E-05 4.3E-10 93.2 1.8 182 31-263 8-197 (369)
254 2hz6_A Endoplasmic reticulum t 97.6 2E-05 6.8E-10 91.5 3.4 180 86-307 8-193 (369)
255 1yiq_A Quinohemoprotein alcoho 97.6 0.0018 6.2E-08 81.4 21.5 204 25-239 239-534 (689)
256 3nok_A Glutaminyl cyclase; bet 97.6 0.0042 1.4E-07 68.1 21.3 182 22-242 56-254 (268)
257 1kb0_A Quinohemoprotein alcoho 97.6 0.0012 4.1E-08 82.9 19.0 206 24-240 246-537 (677)
258 3v9f_A Two-component system se 97.6 0.061 2.1E-06 68.3 35.0 247 22-308 314-570 (781)
259 1yiq_A Quinohemoprotein alcoho 97.6 0.0048 1.6E-07 77.6 24.3 247 31-308 120-507 (689)
260 2y4t_A DNAJ homolog subfamily 97.6 0.0049 1.7E-07 71.8 22.9 166 935-1102 147-354 (450)
261 3tc9_A Hypothetical hydrolase; 97.5 0.0025 8.4E-08 75.5 20.2 157 76-259 137-301 (430)
262 3ieg_A DNAJ homolog subfamily 97.5 0.0065 2.2E-07 67.7 22.8 167 934-1102 123-331 (359)
263 2xpi_A Anaphase-promoting comp 97.5 0.0031 1.1E-07 76.6 21.0 160 939-1100 381-573 (597)
264 2xbg_A YCF48-like protein; pho 97.5 0.057 2E-06 61.0 30.1 186 76-303 36-231 (327)
265 4a1s_A PINS, partner of inscut 97.5 0.0087 3E-07 68.8 23.6 21 937-957 132-152 (411)
266 3hxj_A Pyrrolo-quinoline quino 97.5 0.0048 1.6E-07 68.8 20.7 177 87-305 107-283 (330)
267 3mkq_B Coatomer subunit alpha; 97.5 0.0016 5.3E-08 67.0 14.9 124 886-1044 3-130 (177)
268 1qqe_A Vesicular transport pro 97.5 0.0021 7.2E-08 71.4 17.2 53 1050-1102 158-224 (292)
269 4hw6_A Hypothetical protein, I 97.4 0.029 1E-06 66.3 27.2 238 22-304 140-431 (433)
270 1fwx_A Nitrous oxide reductase 97.4 0.0021 7.2E-08 78.1 17.0 195 22-243 135-408 (595)
271 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.16 5.6E-06 57.8 32.3 234 31-308 52-298 (376)
272 4hw6_A Hypothetical protein, I 97.4 0.017 5.8E-07 68.3 24.3 156 76-258 139-303 (433)
273 2pm7_A Protein WEB1, protein t 97.3 0.0018 6.1E-08 75.5 14.4 143 937-1089 139-286 (399)
274 3ro2_A PINS homolog, G-protein 97.3 0.023 7.8E-07 62.2 23.0 31 986-1016 179-209 (338)
275 3ulq_A Response regulator aspa 97.3 0.017 5.9E-07 66.2 22.8 21 937-957 109-129 (383)
276 1w3b_A UDP-N-acetylglucosamine 97.3 0.004 1.4E-07 71.3 17.1 162 938-1102 142-330 (388)
277 2xbg_A YCF48-like protein; pho 97.3 0.048 1.7E-06 61.6 25.9 220 22-294 81-313 (327)
278 2xpi_A Anaphase-promoting comp 97.3 0.0077 2.6E-07 73.1 20.4 163 937-1102 311-500 (597)
279 3mkr_A Coatomer subunit epsilo 97.3 0.022 7.7E-07 63.2 22.6 182 917-1101 14-224 (291)
280 3sf4_A G-protein-signaling mod 97.2 0.047 1.6E-06 61.9 25.6 90 985-1075 182-292 (406)
281 3sre_A PON1, serum paraoxonase 97.2 0.059 2E-06 61.9 25.9 188 22-241 51-285 (355)
282 1w3b_A UDP-N-acetylglucosamine 97.2 0.016 5.5E-07 66.2 21.1 162 938-1102 176-364 (388)
283 3uq3_A Heat shock protein STI1 97.2 0.0011 3.6E-08 70.5 10.3 112 990-1102 79-198 (258)
284 2y4t_A DNAJ homolog subfamily 97.2 0.0027 9.2E-08 74.0 14.5 165 936-1102 99-320 (450)
285 2ifu_A Gamma-SNAP; membrane fu 97.2 0.005 1.7E-07 68.8 15.9 86 1009-1102 122-220 (307)
286 3q15_A PSP28, response regulat 97.1 0.03 1E-06 64.1 21.7 158 915-1075 75-286 (378)
287 1qqe_A Vesicular transport pro 97.1 0.0029 9.9E-08 70.3 12.7 88 1007-1101 81-182 (292)
288 1b89_A Protein (clathrin heavy 97.1 0.0012 4.1E-08 77.7 9.7 126 944-1079 107-236 (449)
289 3edt_B KLC 2, kinesin light ch 97.0 0.013 4.3E-07 62.8 17.1 26 1050-1075 169-194 (283)
290 3ieg_A DNAJ homolog subfamily 97.0 0.024 8.1E-07 63.0 19.9 23 1053-1075 191-213 (359)
291 3kya_A Putative phosphatase; s 97.0 0.21 7E-06 59.8 28.4 113 22-145 140-276 (496)
292 3v9f_A Two-component system se 97.0 1.4 4.9E-05 55.6 47.8 386 22-464 116-555 (781)
293 3ulq_A Response regulator aspa 97.0 0.18 6.1E-06 57.6 27.2 21 937-957 149-169 (383)
294 3mkr_A Coatomer subunit epsilo 97.0 0.017 5.8E-07 64.2 17.9 79 935-1016 105-192 (291)
295 2ism_A Putative oxidoreductase 97.0 0.22 7.7E-06 56.8 27.6 152 76-240 31-220 (352)
296 3a9g_A Putative uncharacterize 96.9 0.35 1.2E-05 55.3 29.1 237 76-339 29-329 (354)
297 3hym_B Cell division cycle pro 96.9 0.011 3.8E-07 65.1 15.9 161 938-1102 63-261 (330)
298 1ijq_A LDL receptor, low-densi 96.9 0.61 2.1E-05 52.2 30.4 163 76-264 30-200 (316)
299 3nf1_A KLC 1, kinesin light ch 96.9 0.027 9.1E-07 61.4 18.4 26 1050-1075 195-220 (311)
300 2ho1_A Type 4 fimbrial biogene 96.9 0.0044 1.5E-07 66.0 11.6 50 1051-1100 176-232 (252)
301 3hym_B Cell division cycle pro 96.9 0.041 1.4E-06 60.5 19.8 52 1051-1102 237-295 (330)
302 3v65_B Low-density lipoprotein 96.9 0.28 9.7E-06 56.7 27.8 162 76-263 116-281 (386)
303 2ifu_A Gamma-SNAP; membrane fu 96.9 0.0031 1.1E-07 70.6 10.6 60 1008-1075 81-140 (307)
304 3cv0_A Peroxisome targeting si 96.8 0.0051 1.8E-07 67.7 12.0 84 991-1075 173-265 (327)
305 1xnf_A Lipoprotein NLPI; TPR, 96.8 0.0096 3.3E-07 63.9 13.8 25 992-1016 113-137 (275)
306 3v64_C Agrin; beta propeller, 96.8 0.61 2.1E-05 53.1 29.4 197 24-263 37-238 (349)
307 3a9g_A Putative uncharacterize 96.8 0.3 1E-05 55.9 26.7 103 22-135 30-153 (354)
308 3qqz_A Putative uncharacterize 96.8 0.48 1.6E-05 51.7 26.8 197 76-294 27-244 (255)
309 3edt_B KLC 2, kinesin light ch 96.8 0.031 1.1E-06 59.7 17.2 31 986-1016 165-195 (283)
310 1k3i_A Galactose oxidase precu 96.7 0.11 3.7E-06 64.7 24.3 126 177-310 246-382 (656)
311 4a1s_A PINS, partner of inscut 96.7 0.081 2.8E-06 60.6 21.5 163 938-1102 93-328 (411)
312 1k3i_A Galactose oxidase precu 96.7 0.039 1.3E-06 68.7 20.2 221 78-310 245-501 (656)
313 3ei3_A DNA damage-binding prot 96.7 3 0.0001 55.2 46.4 76 77-155 515-600 (1158)
314 3sf4_A G-protein-signaling mod 96.7 0.13 4.6E-06 58.1 23.0 117 985-1102 122-292 (406)
315 1ijq_A LDL receptor, low-densi 96.7 0.51 1.7E-05 52.9 27.4 198 22-260 31-240 (316)
316 3uq3_A Heat shock protein STI1 96.7 0.0074 2.5E-07 63.9 11.1 102 935-1039 83-196 (258)
317 2vq2_A PILW, putative fimbrial 96.6 0.0073 2.5E-07 62.5 10.8 77 938-1016 15-103 (225)
318 3fp2_A TPR repeat-containing p 96.6 0.017 5.7E-07 68.9 15.3 162 936-1102 248-453 (537)
319 3ro2_A PINS homolog, G-protein 96.6 0.19 6.4E-06 54.7 22.6 116 985-1101 118-287 (338)
320 2ism_A Putative oxidoreductase 96.6 0.2 6.8E-06 57.3 23.5 103 22-135 32-153 (352)
321 1fch_A Peroxisomal targeting s 96.6 0.02 6.9E-07 64.4 14.9 79 937-1016 138-243 (368)
322 3p5b_L Low density lipoprotein 96.6 0.88 3E-05 52.9 29.2 164 76-265 112-283 (400)
323 3v64_C Agrin; beta propeller, 96.6 0.52 1.8E-05 53.6 26.8 174 22-230 74-253 (349)
324 3v65_B Low-density lipoprotein 96.5 0.41 1.4E-05 55.4 25.8 198 22-261 117-321 (386)
325 2pm7_A Protein WEB1, protein t 96.5 0.038 1.3E-06 64.3 16.5 132 877-1028 145-286 (399)
326 3gw4_A Uncharacterized protein 96.4 0.067 2.3E-06 54.4 16.4 112 943-1075 4-132 (203)
327 3p5b_L Low density lipoprotein 96.4 0.94 3.2E-05 52.6 28.1 162 22-216 113-281 (400)
328 1kv9_A Type II quinohemoprotei 96.4 0.11 3.7E-06 64.9 21.2 82 25-110 234-337 (668)
329 4abn_A Tetratricopeptide repea 96.4 0.018 6E-07 68.9 13.3 137 935-1075 106-283 (474)
330 4eqf_A PEX5-related protein; a 96.3 0.029 1E-06 63.3 14.3 20 938-957 140-159 (365)
331 2q7f_A YRRB protein; TPR, prot 96.3 0.0033 1.1E-07 66.2 5.8 24 1052-1075 161-184 (243)
332 3sov_A LRP-6, low-density lipo 96.3 1 3.5E-05 50.6 26.8 199 22-261 36-241 (318)
333 3cv0_A Peroxisome targeting si 96.3 0.059 2E-06 59.0 16.3 131 941-1073 148-309 (327)
334 2ho1_A Type 4 fimbrial biogene 96.3 0.04 1.4E-06 58.3 14.3 137 937-1075 77-234 (252)
335 2ad6_A Methanol dehydrogenase 96.3 0.13 4.5E-06 63.0 20.4 81 25-109 239-338 (571)
336 2qfc_A PLCR protein; TPR, HTH, 96.3 0.14 4.9E-06 56.2 18.9 60 1010-1075 162-221 (293)
337 3vtx_A MAMA; tetratricopeptide 96.2 0.015 5.1E-07 58.9 9.9 76 938-1015 12-98 (184)
338 2gw1_A Mitochondrial precursor 96.2 0.039 1.3E-06 65.0 14.9 163 935-1102 241-440 (514)
339 1kv9_A Type II quinohemoprotei 96.2 0.31 1.1E-05 60.8 23.5 99 31-139 116-252 (668)
340 2ond_A Cleavage stimulation fa 96.2 0.062 2.1E-06 59.7 15.6 133 944-1078 77-231 (308)
341 3gw4_A Uncharacterized protein 96.2 0.38 1.3E-05 48.6 20.4 58 1010-1074 114-171 (203)
342 2g8s_A Glucose/sorbosone dehyd 96.2 0.44 1.5E-05 54.4 23.0 52 76-127 18-76 (353)
343 4eqf_A PEX5-related protein; a 96.1 0.0057 2E-07 69.3 6.7 24 1052-1075 249-272 (365)
344 3das_A Putative oxidoreductase 96.1 0.15 5.2E-06 58.2 18.4 58 76-133 32-100 (347)
345 3s25_A Hypothetical 7-bladed b 96.1 0.39 1.3E-05 53.8 21.3 197 30-289 23-239 (302)
346 1flg_A Protein (quinoprotein e 96.0 0.19 6.3E-06 61.8 20.0 82 24-109 249-358 (582)
347 2p9w_A MAL S 1 allergenic prot 96.0 0.95 3.2E-05 51.1 23.9 214 22-264 14-270 (334)
348 3kya_A Putative phosphatase; s 95.9 0.22 7.5E-06 59.6 19.4 157 76-259 139-341 (496)
349 3q15_A PSP28, response regulat 95.9 0.82 2.8E-05 51.9 23.9 79 938-1017 148-249 (378)
350 3fp2_A TPR repeat-containing p 95.9 0.041 1.4E-06 65.4 12.9 110 992-1101 346-486 (537)
351 2ad6_A Methanol dehydrogenase 95.8 2.7 9.2E-05 51.2 29.2 69 31-109 114-188 (571)
352 3u4t_A TPR repeat-containing p 95.8 0.034 1.2E-06 59.6 10.9 81 935-1017 41-135 (272)
353 3q7m_A Lipoprotein YFGL, BAMB; 95.8 1.4 4.7E-05 50.0 25.0 174 87-303 188-375 (376)
354 3u4t_A TPR repeat-containing p 95.8 0.088 3E-06 56.3 14.0 140 934-1076 6-168 (272)
355 3u3w_A Transcriptional activat 95.8 0.67 2.3E-05 50.7 21.5 60 1010-1075 162-221 (293)
356 3ro3_A PINS homolog, G-protein 95.7 0.29 1E-05 46.8 16.2 25 1051-1075 90-114 (164)
357 2gw1_A Mitochondrial precursor 95.6 0.015 5E-07 68.7 7.7 112 988-1100 235-361 (514)
358 2g8s_A Glucose/sorbosone dehyd 95.6 3.6 0.00012 46.7 27.6 106 22-134 19-147 (353)
359 3nf1_A KLC 1, kinesin light ch 95.6 0.23 8E-06 53.7 16.9 26 1050-1075 153-178 (311)
360 1cru_A Protein (soluble quinop 95.6 0.28 9.6E-06 58.2 18.6 60 76-135 27-99 (454)
361 2pl2_A Hypothetical conserved 95.6 0.013 4.4E-07 61.9 6.3 52 1051-1102 152-210 (217)
362 1w6s_A Methanol dehydrogenase 95.6 0.39 1.3E-05 59.0 20.5 81 25-109 245-345 (599)
363 2p9w_A MAL S 1 allergenic prot 95.6 0.55 1.9E-05 53.0 19.8 163 77-258 14-214 (334)
364 3s25_A Hypothetical 7-bladed b 95.5 0.94 3.2E-05 50.6 21.6 180 26-260 58-256 (302)
365 3sov_A LRP-6, low-density lipo 95.5 4.2 0.00014 45.5 27.3 161 77-263 36-201 (318)
366 3n71_A Histone lysine methyltr 95.4 0.68 2.3E-05 55.4 21.3 71 987-1075 348-418 (490)
367 1xnf_A Lipoprotein NLPI; TPR, 95.4 0.14 4.7E-06 54.7 13.9 95 944-1040 18-135 (275)
368 4gyw_A UDP-N-acetylglucosamine 95.4 0.055 1.9E-06 68.2 12.1 74 939-1015 17-102 (723)
369 3as5_A MAMA; tetratricopeptide 95.4 0.064 2.2E-06 53.1 10.4 24 1052-1075 112-135 (186)
370 2pl2_A Hypothetical conserved 95.4 0.039 1.3E-06 58.1 9.2 137 936-1075 44-210 (217)
371 3m0c_C LDL receptor, low-densi 95.4 3.4 0.00012 52.4 28.4 199 22-256 425-629 (791)
372 4abn_A Tetratricopeptide repea 95.4 0.074 2.5E-06 63.4 12.6 127 974-1102 116-283 (474)
373 3as5_A MAMA; tetratricopeptide 95.4 0.027 9.1E-07 55.9 7.4 100 974-1075 56-169 (186)
374 3ro3_A PINS homolog, G-protein 95.3 0.48 1.6E-05 45.2 16.0 58 1011-1075 97-154 (164)
375 3mzk_B Protein transport prote 95.2 0.081 2.8E-06 62.1 11.7 124 951-1078 157-305 (441)
376 1n7d_A LDL receptor, low-densi 95.2 0.068 2.3E-06 67.2 11.9 200 22-260 407-616 (699)
377 1fch_A Peroxisomal targeting s 95.2 0.19 6.4E-06 56.3 14.5 70 943-1014 193-275 (368)
378 2vq2_A PILW, putative fimbrial 95.1 0.089 3.1E-06 54.0 10.6 112 990-1102 42-172 (225)
379 2q7f_A YRRB protein; TPR, prot 95.0 0.037 1.3E-06 58.0 7.5 137 936-1075 62-218 (243)
380 3m0c_C LDL receptor, low-densi 95.0 7 0.00024 49.5 29.4 163 76-264 424-594 (791)
381 2ooe_A Cleavage stimulation fa 94.9 1.1 3.8E-05 53.6 21.3 100 975-1078 260-384 (530)
382 2yhc_A BAMD, UPF0169 lipoprote 94.9 0.43 1.5E-05 50.1 15.6 49 934-983 7-64 (225)
383 3vtx_A MAMA; tetratricopeptide 94.9 0.088 3E-06 53.0 9.7 108 991-1099 40-163 (184)
384 3qky_A Outer membrane assembly 94.8 0.25 8.6E-06 52.9 13.8 132 935-1076 19-174 (261)
385 1hz4_A MALT regulatory protein 94.8 4.8 0.00016 45.1 25.1 20 938-957 100-119 (373)
386 3qwp_A SET and MYND domain-con 94.6 0.46 1.6E-05 55.9 16.2 82 976-1075 310-396 (429)
387 4gyw_A UDP-N-acetylglucosamine 94.4 0.09 3.1E-06 66.3 10.1 133 954-1099 19-167 (723)
388 4g26_A Pentatricopeptide repea 94.4 0.13 4.4E-06 62.0 11.1 82 1019-1102 108-200 (501)
389 4gcn_A Protein STI-1; structur 94.3 0.36 1.2E-05 46.0 12.1 57 1010-1072 49-105 (127)
390 3sre_A PON1, serum paraoxonase 94.2 6.9 0.00024 44.6 24.5 194 77-293 51-287 (355)
391 1ouv_A Conserved hypothetical 94.1 0.14 4.8E-06 55.2 9.6 127 944-1075 55-211 (273)
392 4i17_A Hypothetical protein; T 93.9 0.43 1.5E-05 49.7 12.8 24 992-1015 78-101 (228)
393 3n71_A Histone lysine methyltr 93.8 0.77 2.6E-05 55.0 16.0 70 988-1075 391-460 (490)
394 2yhc_A BAMD, UPF0169 lipoprote 93.7 1.4 4.7E-05 46.2 16.4 23 935-957 45-67 (225)
395 1w6s_A Methanol dehydrogenase 93.7 5.9 0.0002 48.5 24.2 75 26-110 111-195 (599)
396 3das_A Putative oxidoreductase 93.6 4 0.00014 46.4 21.0 156 117-289 32-218 (347)
397 3u3w_A Transcriptional activat 93.6 1.1 3.7E-05 49.1 15.8 17 1094-1110 261-277 (293)
398 3amr_A 3-phytase; beta-propell 93.5 7.7 0.00026 44.1 22.7 197 29-267 37-273 (355)
399 2xm6_A Protein corresponding t 93.5 2.1 7.2E-05 50.5 19.3 14 944-957 200-213 (490)
400 2ond_A Cleavage stimulation fa 93.4 1.6 5.6E-05 48.0 16.9 26 1050-1075 241-266 (308)
401 3gyz_A Chaperone protein IPGC; 93.3 0.4 1.4E-05 47.7 10.5 106 965-1075 15-129 (151)
402 3ei3_A DNA damage-binding prot 93.2 30 0.001 45.7 47.4 232 31-308 336-593 (1158)
403 1ouv_A Conserved hypothetical 93.1 0.57 2E-05 50.3 12.4 157 939-1100 14-209 (273)
404 2qfc_A PLCR protein; TPR, HTH, 92.9 11 0.00036 40.9 22.5 53 1010-1069 203-255 (293)
405 4ga2_A E3 SUMO-protein ligase 92.8 0.37 1.3E-05 47.3 9.5 53 1010-1075 72-124 (150)
406 3qww_A SET and MYND domain-con 92.8 1.1 3.6E-05 52.9 15.0 70 988-1075 338-407 (433)
407 1n7d_A LDL receptor, low-densi 92.8 0.28 9.6E-06 61.5 10.6 162 76-263 406-575 (699)
408 2qx5_A Nucleoporin NIC96; mRNA 92.8 1.2 4.1E-05 55.0 15.8 111 986-1103 439-564 (661)
409 2pzi_A Probable serine/threoni 92.6 0.23 7.9E-06 62.1 9.3 101 974-1077 447-561 (681)
410 2vsy_A XCC0866; transferase, g 92.4 0.16 5.5E-06 61.7 7.5 85 991-1076 58-154 (568)
411 1cru_A Protein (soluble quinop 92.4 6.3 0.00022 46.5 21.0 114 118-242 28-163 (454)
412 4b4t_Q 26S proteasome regulato 92.3 1.6 5.5E-05 50.0 15.6 25 1051-1075 136-160 (434)
413 2hr2_A Hypothetical protein; a 92.3 1.1 3.9E-05 45.0 12.2 64 1006-1075 60-127 (159)
414 1hz4_A MALT regulatory protein 92.2 2 6.9E-05 48.2 15.9 80 936-1016 19-119 (373)
415 2fo7_A Synthetic consensus TPR 92.2 0.2 6.7E-06 46.3 6.2 13 943-955 13-25 (136)
416 2fo7_A Synthetic consensus TPR 92.0 0.27 9.4E-06 45.2 7.0 24 1052-1075 71-94 (136)
417 3mv2_B Coatomer subunit epsilo 92.0 2.1 7.1E-05 48.0 15.1 108 994-1101 104-235 (310)
418 4g1t_A Interferon-induced prot 91.9 0.81 2.8E-05 53.2 12.4 20 938-957 58-77 (472)
419 4i17_A Hypothetical protein; T 91.8 3.2 0.00011 42.9 15.9 112 963-1077 12-144 (228)
420 2fbn_A 70 kDa peptidylprolyl i 91.8 0.11 3.8E-06 53.3 4.4 48 1052-1099 90-144 (198)
421 2xm6_A Protein corresponding t 91.8 2.5 8.6E-05 49.8 16.7 70 944-1016 128-213 (490)
422 4b4t_Q 26S proteasome regulato 91.8 3.4 0.00012 47.2 17.4 84 991-1075 96-200 (434)
423 4f3v_A ESX-1 secretion system 91.4 1 3.5E-05 49.8 11.7 86 989-1075 101-196 (282)
424 4ady_A RPN2, 26S proteasome re 91.3 12 0.00039 48.0 22.3 179 920-1101 52-270 (963)
425 1hh8_A P67PHOX, NCF-2, neutrop 91.3 1.8 6E-05 44.1 12.9 24 1052-1075 123-146 (213)
426 3urz_A Uncharacterized protein 91.0 0.49 1.7E-05 49.1 8.4 23 935-957 8-30 (208)
427 4gco_A Protein STI-1; structur 90.9 0.45 1.5E-05 45.3 7.3 22 1053-1074 84-105 (126)
428 2qx5_A Nucleoporin NIC96; mRNA 90.9 5.9 0.0002 48.9 19.0 152 938-1097 301-487 (661)
429 3sz7_A HSC70 cochaperone (SGT) 90.7 0.75 2.6E-05 45.3 9.0 19 1054-1072 83-101 (164)
430 2vgx_A Chaperone SYCD; alterna 90.6 0.76 2.6E-05 45.0 8.9 40 974-1016 8-47 (148)
431 1p5q_A FKBP52, FK506-binding p 90.3 0.54 1.8E-05 53.1 8.5 54 1009-1075 202-255 (336)
432 4g1t_A Interferon-induced prot 90.0 1.8 6.1E-05 50.3 12.9 20 938-957 254-273 (472)
433 3qky_A Outer membrane assembly 89.9 5.5 0.00019 42.2 15.8 53 962-1016 19-78 (261)
434 3qou_A Protein YBBN; thioredox 89.9 0.52 1.8E-05 51.8 7.7 84 991-1075 152-244 (287)
435 4hvt_A Ritya.17583.B, post-pro 89.8 38 0.0013 42.2 25.3 232 78-333 131-409 (711)
436 1hh8_A P67PHOX, NCF-2, neutrop 89.8 1.4 4.7E-05 45.0 10.4 102 971-1101 18-145 (213)
437 2vsy_A XCC0866; transferase, g 89.7 0.63 2.1E-05 56.4 8.9 109 992-1101 25-152 (568)
438 1a17_A Serine/threonine protei 89.7 1.1 3.8E-05 43.3 9.2 24 1052-1075 83-106 (166)
439 1tl2_A L10, protein (tachylect 89.5 1.7 5.8E-05 46.2 10.6 141 77-240 42-199 (236)
440 1flg_A Protein (quinoprotein e 89.4 45 0.0015 40.4 30.4 75 31-110 116-197 (582)
441 2pzi_A Probable serine/threoni 89.2 0.53 1.8E-05 58.8 7.9 161 935-1102 437-626 (681)
442 3qou_A Protein YBBN; thioredox 88.9 1.2 4.1E-05 48.8 9.7 24 1052-1075 257-280 (287)
443 3pbp_A Nucleoporin NUP82; beta 88.7 5.6 0.00019 46.3 15.2 133 201-344 40-205 (452)
444 3upv_A Heat shock protein STI1 88.6 0.84 2.9E-05 42.6 7.2 23 1052-1074 74-96 (126)
445 1elr_A TPR2A-domain of HOP; HO 88.6 4.1 0.00014 37.0 11.9 25 1051-1075 80-104 (131)
446 3rkv_A Putative peptidylprolyl 88.6 1.1 3.7E-05 44.1 8.3 49 1051-1099 64-119 (162)
447 3urz_A Uncharacterized protein 88.1 0.97 3.3E-05 46.8 7.9 45 996-1040 60-112 (208)
448 3mv2_B Coatomer subunit epsilo 88.1 4.1 0.00014 45.6 13.3 101 938-1039 107-234 (310)
449 1kt0_A FKBP51, 51 kDa FK506-bi 88.1 0.57 2E-05 55.4 6.8 18 1009-1026 323-340 (457)
450 2ooe_A Cleavage stimulation fa 88.1 3 0.0001 49.7 13.3 46 970-1016 332-382 (530)
451 2c2l_A CHIP, carboxy terminus 88.0 2.3 7.8E-05 46.4 11.2 52 1024-1076 46-98 (281)
452 2wg3_C Hedgehog-interacting pr 87.9 10 0.00036 44.8 17.5 60 76-135 14-91 (463)
453 3mzk_B Protein transport prote 87.9 6.8 0.00023 45.9 15.5 90 1012-1104 159-263 (441)
454 3amr_A 3-phytase; beta-propell 87.8 42 0.0014 38.1 22.9 129 201-341 49-200 (355)
455 2xcb_A PCRH, regulatory protei 87.2 2.9 0.0001 40.0 10.2 19 995-1013 23-41 (142)
456 4gco_A Protein STI-1; structur 87.1 3.5 0.00012 38.9 10.6 79 1008-1099 18-103 (126)
457 1ihg_A Cyclophilin 40; ppiase 87.0 1.7 5.7E-05 49.9 9.7 55 1008-1075 278-332 (370)
458 1tl2_A L10, protein (tachylect 86.8 3.5 0.00012 43.8 11.1 107 22-141 42-157 (236)
459 3s94_A LRP-6, low-density lipo 86.8 66 0.0022 39.3 41.2 110 22-144 85-199 (619)
460 1na0_A Designed protein CTPR3; 86.6 1.2 4.1E-05 40.3 6.7 47 1053-1099 46-99 (125)
461 2r5s_A Uncharacterized protein 86.3 2.7 9.1E-05 41.9 9.7 26 1051-1076 109-134 (176)
462 1elw_A TPR1-domain of HOP; HOP 86.2 1.3 4.5E-05 39.7 6.7 22 1054-1075 76-97 (118)
463 3q49_B STIP1 homology and U bo 86.1 2.5 8.7E-05 39.4 9.0 20 1053-1072 80-99 (137)
464 3s94_A LRP-6, low-density lipo 85.9 72 0.0025 38.9 45.4 195 22-257 41-241 (619)
465 3pbp_A Nucleoporin NUP82; beta 85.3 12 0.00041 43.6 15.4 122 274-421 67-209 (452)
466 2dba_A Smooth muscle cell asso 84.9 1.3 4.4E-05 41.9 6.2 23 1053-1075 102-124 (148)
467 1bpo_A Protein (clathrin); cla 84.8 67 0.0023 37.6 24.9 238 281-600 74-325 (494)
468 1p5q_A FKBP52, FK506-binding p 84.4 1.5 5.2E-05 49.3 7.5 80 991-1071 197-285 (336)
469 2xzh_A Clathrin heavy chain 1; 84.4 59 0.002 36.6 24.2 238 281-600 75-326 (365)
470 3rkv_A Putative peptidylprolyl 84.3 5.2 0.00018 39.0 10.6 29 990-1018 11-39 (162)
471 2dba_A Smooth muscle cell asso 84.1 6.1 0.00021 36.9 10.8 51 1050-1100 65-122 (148)
472 1kt0_A FKBP51, 51 kDa FK506-bi 84.1 3.3 0.00011 48.8 10.6 26 991-1016 318-343 (457)
473 2h6f_A Protein farnesyltransfe 83.9 6 0.0002 45.5 12.4 78 935-1015 135-225 (382)
474 2vyi_A SGTA protein; chaperone 83.6 2.3 7.7E-05 38.8 7.2 18 1055-1072 85-102 (131)
475 2lni_A Stress-induced-phosphop 83.4 1.2 4.1E-05 41.1 5.2 23 1053-1075 87-109 (133)
476 4gcn_A Protein STI-1; structur 83.2 7.6 0.00026 36.5 10.9 24 1052-1075 44-67 (127)
477 3upv_A Heat shock protein STI1 83.1 7.9 0.00027 35.6 10.9 81 1007-1100 8-95 (126)
478 2h6f_A Protein farnesyltransfe 83.1 2.5 8.6E-05 48.7 8.8 72 935-1009 170-254 (382)
479 4f3v_A ESX-1 secretion system 82.8 4.3 0.00015 44.7 10.0 109 942-1075 113-233 (282)
480 2xcb_A PCRH, regulatory protei 82.8 9.9 0.00034 36.1 11.7 81 1008-1101 23-110 (142)
481 3sz7_A HSC70 cochaperone (SGT) 82.6 6.8 0.00023 38.2 10.7 78 1009-1099 17-101 (164)
482 3ffl_A Anaphase-promoting comp 82.5 3.6 0.00012 41.5 8.3 50 966-1016 27-89 (167)
483 1na0_A Designed protein CTPR3; 82.5 15 0.00051 32.6 12.3 89 986-1075 5-102 (125)
484 1a17_A Serine/threonine protei 81.5 3.8 0.00013 39.3 8.3 24 934-957 16-39 (166)
485 4a9v_A PHOX; hydrolase, beta-p 81.5 13 0.00043 45.0 14.0 112 22-134 385-548 (592)
486 1elr_A TPR2A-domain of HOP; HO 81.3 7.5 0.00026 35.2 9.9 24 1052-1075 40-63 (131)
487 2kck_A TPR repeat; tetratricop 81.3 1.7 5.8E-05 38.5 5.2 23 1053-1075 79-102 (112)
488 2vpj_A Kelch-like protein 12; 80.8 54 0.0018 35.2 18.3 201 86-309 14-234 (301)
489 4g26_A Pentatricopeptide repea 80.6 6 0.00021 47.3 11.1 51 1052-1102 107-165 (501)
490 1hxi_A PEX5, peroxisome target 80.6 8.8 0.0003 35.7 10.2 57 1006-1075 20-76 (121)
491 3ma5_A Tetratricopeptide repea 80.5 15 0.00052 32.6 11.4 54 1009-1075 13-66 (100)
492 1ihg_A Cyclophilin 40; ppiase 80.3 8.8 0.0003 43.7 12.0 51 1050-1100 273-330 (370)
493 3zwu_A Alkaline phosphatase PH 80.3 9.3 0.00032 46.6 12.6 58 76-134 476-548 (592)
494 2hr2_A Hypothetical protein; a 80.2 17 0.00058 36.4 12.5 63 1007-1075 15-82 (159)
495 2r5s_A Uncharacterized protein 80.0 2.3 7.9E-05 42.4 6.2 24 1052-1075 146-169 (176)
496 2xev_A YBGF; tetratricopeptide 79.7 13 0.00045 33.9 11.1 82 1009-1100 8-99 (129)
497 3gyz_A Chaperone protein IPGC; 79.0 4 0.00014 40.3 7.4 25 992-1016 72-96 (151)
498 2kck_A TPR repeat; tetratricop 78.6 3.5 0.00012 36.4 6.4 81 1008-1101 11-101 (112)
499 2e2e_A Formate-dependent nitri 78.4 3.3 0.00011 40.9 6.8 12 1087-1098 125-136 (177)
500 2lni_A Stress-induced-phosphop 77.9 3.2 0.00011 38.0 6.1 24 992-1015 52-75 (133)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-42 Score=445.07 Aligned_cols=702 Identities=13% Similarity=0.087 Sum_probs=452.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.++.|..|+. .++.. +.+ +.++ .+.|.+++|+|+++.|++++.||+|++
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~--~~~~~---~~~----~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNY--ETQVE---VRS----IQVT----ETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEET--TTTEE---EEE----EECC----SSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEEC--CCCce---EEE----EecC----CCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 7999999999999999999999999998 44432 111 3333 368999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC--ceeeeeecccccCccccccCccccCCCCeEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW--DLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~--d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
||..+++. .....|.+.|.+++|||||+.||+++.||+|++|+..- .... .+.+|...+.+
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~----------------~~~~~~~~v~~ 145 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ----------------TFEGHEHFVMC 145 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE----------------EEECCSSCEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE----------------EEcCCCCcEEE
Confidence 99987654 45566789999999999999999999999999997431 1111 12245677899
Q ss_pred EEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-CCceeEEEEcC--CCCeEEEEecCCCCCCCCeEEE
Q 000992 179 ISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-AFMGAVLEWMP--SGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 179 isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-~~~v~slawsP--dG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
++|+| ||.+|+ +++ .+++|++||..++........+ ...+..++|+| +|++|++++.+ ..|.+
T Consensus 146 ~~~~p~~~~~l~-~~~------~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~i~~ 212 (814)
T 3mkq_A 146 VAFNPKDPSTFA-SGC------LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD------LTIKI 212 (814)
T ss_dssp EEEETTEEEEEE-EEE------TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT------SEEEE
T ss_pred EEEEcCCCCEEE-EEe------CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC------CEEEE
Confidence 99999 999999 565 4689999998777776666544 47789999999 99999999885 47999
Q ss_pred EeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 255 YERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 255 ~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
|+.. |.... .+.. +...|..++|+|||++|++++.|+ +|++|+..++.. .+.+..+......+.|+|++..
T Consensus 213 ~d~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~dg---~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 213 WDYQTKSCVA--TLEG-HMSNVSFAVFHPTLPIIISGSEDG---TLKIWNSSTYKV--EKTLNVGLERSWCIATHPTGRK 284 (814)
T ss_dssp EETTTTEEEE--EEEC-CSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTCSE--EEEECCSSSSEEEEEECTTCGG
T ss_pred EECCCCcEEE--EEcC-CCCCEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCcE--EEEeecCCCcEEEEEEccCCCc
Confidence 9954 43333 2333 356799999999999999999999 999999987642 3344443334488999999876
Q ss_pred e-EEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEE------------eecc-ccCC----CCCceeeee-cCCCCE
Q 000992 334 Q-LICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILV------------TPLS-LSLM----PPPMYLFSL-KFPTAV 394 (1196)
Q Consensus 334 ~-L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~l------------t~l~-~~~v----pppm~~~~l-~~~~~V 394 (1196)
. +.... ++.+.. |.............+|..+.. ..++ .+.+ +.+.....+ .+...+
T Consensus 285 ~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (814)
T 3mkq_A 285 NYIASGF-DNGFTV----LSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFP 359 (814)
T ss_dssp GEEEEEE-TTEEEE----EECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCC
T ss_pred eEEEEEe-CCCEEE----EEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCC
Confidence 4 44444 454433 332211000111112221111 1111 0111 111111222 245678
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceE
Q 000992 395 TEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNY 474 (1196)
Q Consensus 395 ~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~ 474 (1196)
.+++|||+| +.+|+++ ||.+.+|+....... +.+.+..++|+|+|.++|++..+ ..+.
T Consensus 360 ~~~~~spdg--~~la~~~-~~~~~i~~~~~~~~~-----------------~~~~i~~~~~spdg~~la~~~~~--g~v~ 417 (814)
T 3mkq_A 360 QSLAHSPNG--RFVTVVG-DGEYVIYTALAWRNK-----------------AFGKCQDFVWGPDSNSYALIDET--GQIK 417 (814)
T ss_dssp SEEEECTTS--SEEEEEE-TTEEEEEETTTTEEE-----------------EEEECSEEEECTTSSCEEEECTT--CCEE
T ss_pred ceeEECCCC--CEEEEec-CCEEEEEECcccccc-----------------CCCceEEEEEeCCCCeEEEEeCC--CcEE
Confidence 999999999 8999887 899999997532110 12357789999999999987654 4566
Q ss_pred EEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCC---ceEEEEeeCCeEEEEe
Q 000992 475 FRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKK---YSAFLQFHGGKISEYM 551 (1196)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~dG~v~~~~ 551 (1196)
+|..- ....+.+..+.+++ ++ ..++....||+|..|+
T Consensus 418 l~~~~---------------------------------------~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~~v~~~d 457 (814)
T 3mkq_A 418 YYKNF---------------------------------------KEVTSWSVPMHSAI-DRLFSGALLGVKSDGFVYFFD 457 (814)
T ss_dssp EEETT---------------------------------------EECTTCCCCCSSCC-CEEECSSSEEEEETTEEEEEC
T ss_pred EEECC---------------------------------------CCccceEEcCCcCc-cceecceEEEEecCCEEEEEE
Confidence 66421 01122334445555 44 4777778999999997
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeEEEecCCCCCccEEEEEc----CCCceE-e--C--------------------C-
Q 000992 552 SRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLD----DGGRLH-V--S--------------------G- 603 (1196)
Q Consensus 552 ~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL~----~~~~L~-~--n--------------------~- 603 (1196)
.... .....++..+. .+...++| +.++++=. .....| + | +
T Consensus 458 ~~~~-------~~~~~~~~~~~---~v~~s~dg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (814)
T 3mkq_A 458 WDNG-------TLVRRIDVNAK---DVIWSDNG--ELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEA 525 (814)
T ss_dssp TTTC-------CEEEEESSCEE---EEEECTTS--SEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTT
T ss_pred CCcC-------cEEEEEecCCC---EEEEcCCC--CEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhh
Confidence 5421 01111222222 11122233 33333210 112222 1 0 0
Q ss_pred -E---EeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccccccccCCCE
Q 000992 604 -K---IVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAK 679 (1196)
Q Consensus 604 -~---~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vErGs~ 679 (1196)
. .+...++|....++ .++|+|..+.+.++...+. ..++.++..-.
T Consensus 526 ~~~~~~~~~~i~s~~w~~~-------~~i~~t~~~~~~~~~~~~~------------------------~~~~~~~~~~~ 574 (814)
T 3mkq_A 526 FDVLYELSESITSGKWVGD-------VFIFTTATNRLNYFVGGKT------------------------YNLAHYTKEMY 574 (814)
T ss_dssp EEEEEEECSCCSEEEEETT-------EEEEECTTSEEEEEETTEE------------------------EEEEECSSCCE
T ss_pred eeeeeEeccEEEeeEEeCC-------EEEEEcCCCeEEEEeCCee------------------------EEEEECCccEE
Confidence 1 12346777777777 8999887677776532110 12234444445
Q ss_pred EEEEecCCccEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeecccHHHHHHhHHHHHHhc
Q 000992 680 VIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQV 759 (1196)
Q Consensus 680 iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~F~~~~~~Fv~qv 759 (1196)
++...|+. .+++++...|++..+. -+ +..+.
T Consensus 575 ~~~~~~~~-~~l~~~d~~~~~~~~~-------------------------------------l~-~~~~~---------- 605 (814)
T 3mkq_A 575 LLGYLARD-NKVYLADREVHVYGYE-------------------------------------IS-LEVLE---------- 605 (814)
T ss_dssp EEEEEGGG-TEEEEECTTCCEEEEE-------------------------------------CC-HHHHH----------
T ss_pred EEEEEecC-CEEEEEcCCCCEEEEE-------------------------------------EC-cHHHH----------
Confidence 66666776 7888877777766544 01 10000
Q ss_pred CCcchHHHHHhhccCCcccccccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHHHHHhhcCCCCCCchhhhhh
Q 000992 760 NNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILT 839 (1196)
Q Consensus 760 ~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~l~~~~~~~~~~~~~ilT 839 (1196)
+..++..
T Consensus 606 -----------------------------------------------------------~~~~~~~-------------- 612 (814)
T 3mkq_A 606 -----------------------------------------------------------FQTLTLR-------------- 612 (814)
T ss_dssp -----------------------------------------------------------HHHHHHT--------------
T ss_pred -----------------------------------------------------------HhHHHHh--------------
Confidence 0000000
Q ss_pred hhhhcCCccHHHHHH-HHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccChhHHHHHHHHhcCCc
Q 000992 840 TLARSDPPALEEALE-RIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDP 918 (1196)
Q Consensus 840 ~~~~~~pp~le~aL~-~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD~~lal~vAq~sq~Dp 918 (1196)
-+++.|+. ++.. .+.
T Consensus 613 -------~~~~~a~~~~l~~---------------------------------------------------------i~~ 628 (814)
T 3mkq_A 613 -------GEIEEAIENVLPN---------------------------------------------------------VEG 628 (814)
T ss_dssp -------TCHHHHHHHTGGG---------------------------------------------------------CCC
T ss_pred -------CCHHHHHHHHHhc---------------------------------------------------------CCc
Confidence 00111211 1000 000
Q ss_pred chhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHH
Q 000992 919 KEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWAD 998 (1196)
Q Consensus 919 keYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~ 998 (1196)
.+++ +++ .+|. .-++.+++|++.... .....++.... +.|++|++++ .
T Consensus 629 ~~~~---~~~-------~~~l--~~~~~~~~a~~~~~~-----~~~~f~~~l~~-~~~~~A~~~~--------------~ 676 (814)
T 3mkq_A 629 KDSL---TKI-------ARFL--EGQEYYEEALNISPD-----QDQKFELALKV-GQLTLARDLL--------------T 676 (814)
T ss_dssp HHHH---HHH-------HHHH--HHTTCHHHHHHHCCC-----HHHHHHHHHHH-TCHHHHHHHH--------------T
T ss_pred hHHH---HHH-------HHHH--HhCCChHHheecCCC-----cchheehhhhc-CCHHHHHHHH--------------H
Confidence 1111 111 1122 236677887765421 34445666677 8888888876 2
Q ss_pred HHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 999 HLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 999 ~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
.+.+...|++++.++.+.|+++.|.+||.++++|+.+..+....+ +. +...++++.....|++..|..+|++ +|
T Consensus 677 ~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~-~~----~~~~~~~~~a~~~~~~~~A~~~~~~-~g 750 (814)
T 3mkq_A 677 DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN-NK----EGLVTLAKDAETTGKFNLAFNAYWI-AG 750 (814)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHH-HT
T ss_pred hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC-CH----HHHHHHHHHHHHcCchHHHHHHHHH-cC
Confidence 222335778888888888888888888888888888888877654 33 3455678888889999999999988 99
Q ss_pred CHHHHHHHHHHhcCHHHHHHHHHhcCCch
Q 000992 1079 DVTNGISLLIDARDWEEALRVAFMHRRED 1107 (1196)
Q Consensus 1079 d~~~Ai~~y~~~~~w~eA~rla~~~~~~d 1107 (1196)
|+++|+++|++.++|++|+.||++|...+
T Consensus 751 ~~~~a~~~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 751 DIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHcCChHHHHHHHHHhCCCh
Confidence 99999999999999999999999998554
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.3e-38 Score=390.55 Aligned_cols=435 Identities=11% Similarity=0.074 Sum_probs=310.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
....++|+|+++.|++++++ .++.|++ ...... .. +.+| .+.|.+++|+|||+.||+|+.||+|+|
T Consensus 20 ~~~~~~~spdg~~l~~~~~~-~v~l~~~--~~~~~~-~~------~~~h----~~~v~~~~~spdg~~lasg~~d~~v~l 85 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGT-SVYTVPV--GSLTDT-EI------YTEH----SHQTTVAKTSPSGYYCASGDVHGNVRI 85 (611)
T ss_dssp CCCCCEECTTSSEEEEEETT-EEEEEET--TCSSCC-EE------ECCC----SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceeEEeeCCCCCEEEeCCCC-EEEEecC--CCcccC-eE------ecCC----CCceEEEEECCCCcEEEEEeCCCCEEE
Confidence 67888999999999998864 6999998 433321 11 4444 357999999999999999999999999
Q ss_pred EECCCC--eE-EEeeeecCcEEEEEECCCCCEEEEEeCC----ceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 102 HSVDGN--AT-EVVGRVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 102 w~~~~~--~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d----~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
||..++ .. .....|.+.|.+++|||||+.||+++.+ ++|.+| +. +.... .+.+|..
T Consensus 86 Wd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~w----d~--~~~~~-----------~l~gh~~ 148 (611)
T 1nr0_A 86 WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF----DT--GTSNG-----------NLTGQAR 148 (611)
T ss_dssp EESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET----TT--CCBCB-----------CCCCCSS
T ss_pred eECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEe----eC--CCCcc-----------eecCCCC
Confidence 998643 22 2445578999999999999999999875 367664 32 11111 2336778
Q ss_pred CeEEEEEccCCce-EEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 175 FKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 175 ~v~~isWspDG~~-lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
.|.+++|+|||.+ || +++ .|++|++||..++++..++.+|.+.|.+++|+|||++||+++.|+ +|+
T Consensus 149 ~v~~v~f~p~~~~~l~-s~s------~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~------~i~ 215 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRII-SGS------DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG------TIV 215 (611)
T ss_dssp CEEEEEECSSSSCEEE-EEE------TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEE
T ss_pred CceEEEECCCCCeEEE-EEe------CCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC------cEE
Confidence 8999999999985 77 565 479999999888999999999999999999999999999999874 699
Q ss_pred EEe-CCCeeEEEEEec----cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE----------------
Q 000992 254 FYE-RNGLERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK---------------- 312 (1196)
Q Consensus 254 ~~e-~nGl~~~~f~l~----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk---------------- 312 (1196)
+|+ .+|.....+.-. ..+.+.|.+++|||||++||+++.|+ +|+||++.+......
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~---~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK---TIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC---eEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence 999 456544432100 03567899999999999999999999 999999987654211
Q ss_pred -------------------------EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEE-----------------
Q 000992 313 -------------------------YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFI----------------- 350 (1196)
Q Consensus 313 -------------------------q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~----------------- 350 (1196)
+.+..|......+.|+|++.. |..++.+|.+..++..
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~ 371 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMIT 371 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEECSSCSCSSCEE
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeeecccCCcceEE
Confidence 111112222378899998864 6666666666543310
Q ss_pred ---------------------E----------------------------------------------------------
Q 000992 351 ---------------------W---------------------------------------------------------- 351 (1196)
Q Consensus 351 ---------------------~---------------------------------------------------------- 351 (1196)
|
T Consensus 372 ~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v 451 (611)
T 1nr0_A 372 GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS 451 (611)
T ss_dssp EEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCE
T ss_pred EEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCc
Confidence 0
Q ss_pred -eee--cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC-CCc
Q 000992 352 -TTA--VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA-PDM 427 (1196)
Q Consensus 352 -~~~--~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~-~~~ 427 (1196)
.++ |++..++....+++|++|++..... .......|+..|++|+||||| +.||+++.|++|++|+..+ ...
T Consensus 452 ~~va~spdg~~lasgs~D~~v~lwd~~~~~~---~~~~~~~h~~~v~~v~fspdg--~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASV---SEVKTIVHPAEITSVAFSNNG--AFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEEEETTEE---EEEEEEECSSCEEEEEECTTS--SEEEEEETTSCEEEEEGGGTTEE
T ss_pred eEEEEeCCCCEEEEeCCCCeEEEEEccCCce---eeeeccCCCCceEEEEECCCC--CEEEEEcCCCCEEEEEcCCCCce
Confidence 011 1122223333445667776643211 112335688999999999999 9999999999999999874 211
Q ss_pred cccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhccccccccccc
Q 000992 428 LEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLT 507 (1196)
Q Consensus 428 ~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1196)
... .....|...|..++|+|||++||+++.+ .++.+|++....
T Consensus 527 ~~~----------~~~~~H~~~V~~v~fspdg~~lasgs~D--~~v~lW~~~~~~------------------------- 569 (611)
T 1nr0_A 527 AHT----------NSWTFHTAKVACVSWSPDNVRLATGSLD--NSVIVWNMNKPS------------------------- 569 (611)
T ss_dssp SCC----------CCCCCCSSCEEEEEECTTSSEEEEEETT--SCEEEEETTCTT-------------------------
T ss_pred eee----------eeeeecccceeEEEECCCCCEEEEEECC--CcEEEEECCCcc-------------------------
Confidence 100 0011256789999999999999999876 689999873100
Q ss_pred ccccceeeeeeecc-CCcEEEEecCCCCCceEEEEeeCCeEEEEec
Q 000992 508 CAGWHAKVSTQIPL-EGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 508 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~ 552 (1196)
... ......+ .+.|.++.+++ ++. ++....||+|..|+.
T Consensus 570 ---~~~-~~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 570 ---DHP-IIIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp ---SCC-EEETTSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEEC
T ss_pred ---ccc-chhhccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEec
Confidence 000 0112234 57788998888 666 888999999999963
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.1e-37 Score=376.34 Aligned_cols=438 Identities=14% Similarity=0.139 Sum_probs=332.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+|+..|++++.|+.|..||. ..+. +.+ +.+| .+.|.+++|+|||+.||+++.||+|++
T Consensus 18 ~V~~~a~spdg~~las~~~d~~v~iWd~--~~~~----~~~----l~gh----~~~V~~l~fspdg~~las~~~d~~i~v 83 (577)
T 2ymu_A 18 SVRGVAFSPDGQTIASASDDKTVKLWNR--NGQL----LQT----LTGH----SSSVWGVAFSPDGQTIASASDDKTVKL 83 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT--TSCE----EEE----EECC----SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEC--CCCE----EEE----EeCC----CCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 7999999999999999999999999997 3322 222 4555 368999999999999999999999999
Q ss_pred EECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccccc--------Cccccc--------
Q 000992 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA--------EGFDVH-------- 165 (1196)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~--------~~~~Vs-------- 165 (1196)
||..+..+..+..|.+.|.+++|||||++||+++.|+++++|+...........+... +...+.
T Consensus 84 Wd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (577)
T 2ymu_A 84 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163 (577)
T ss_dssp EETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred EECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccce
Confidence 9988776666666789999999999999999999999999998654443322211111 011110
Q ss_pred ---------cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCe
Q 000992 166 ---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1196)
Q Consensus 166 ---------~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~ 236 (1196)
......+...+..+.|+|||++|+ +++ .+++|++||. +|++..+..+|.+.+.+++|+|+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~------~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~ 235 (577)
T 2ymu_A 164 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIA-SAS------DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT 235 (577)
T ss_dssp EEECTTSCEEEEEECCSSCEEEEEECTTSSCEE-EEE------TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred eccccceeeeeeccCCCcceeeeeecCCCCEEE-EEc------CCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCE
Confidence 011225778899999999999999 565 4689999998 99999999999999999999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE
Q 000992 237 IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR 316 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~ 316 (1196)
|++++.+. .|++|+.+|..... +.. +...|.+++|+|||+.|++++.|+ +|++|+.... +.+.+.
T Consensus 236 l~~~~~d~------~i~~w~~~~~~~~~--~~~-~~~~v~~v~~~~d~~~l~~~~~d~---~i~~w~~~~~---~~~~~~ 300 (577)
T 2ymu_A 236 IASASDDK------TVKLWNRNGQLLQT--LTG-HSSSVNGVAFRPDGQTIASASDDK---TVKLWNRNGQ---LLQTLT 300 (577)
T ss_dssp EEEEETTS------CEEEECTTSCEEEE--ECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSC---EEEEEC
T ss_pred EEEEeCCC------EEEEEeCCCCEEEE--Eec-CCCCEEEEEEcCCCCEEEEEeCCC---EEEEEeCCCc---EEEEEe
Confidence 99999864 69999998865443 333 356899999999999999999999 9999997653 234444
Q ss_pred EecCCcEEEEEccCCCceEEEEecCCcEEEEEE--------------EEeee--cCCCeeEEEEcCCEEEEeeccccCCC
Q 000992 317 YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF--------------IWTTA--VMENSTALVIDGSKILVTPLSLSLMP 380 (1196)
Q Consensus 317 ~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~--------------~~~~~--~~d~~~v~viDg~~l~lt~l~~~~vp 380 (1196)
.+......+.|+|++.. +..++.+|.+..++. ++.++ +++..++...++..+++|+....
T Consensus 301 ~h~~~v~~~~~~~~~~~-l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~--- 376 (577)
T 2ymu_A 301 GHSSSVWGVAFSPDGQT-IASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--- 376 (577)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC---
T ss_pred cCCCCeEEEEECCCCCE-EEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC---
Confidence 44444488999998865 667777777765431 11122 33344555566778888875321
Q ss_pred CCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCC
Q 000992 381 PPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH 459 (1196)
Q Consensus 381 ppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~ 459 (1196)
...++ .|...|.+++|+||| +.||+++.|++|++|+... .....+. .+...+..++|+||+
T Consensus 377 ---~~~~~~~~~~~v~~~~~s~dg--~~l~~~~~d~~v~~~~~~~-~~~~~~~------------~~~~~v~~~~~s~d~ 438 (577)
T 2ymu_A 377 ---LLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNRNG-QLLQTLT------------GHSSSVWGVAFSPDD 438 (577)
T ss_dssp ---EEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECTTC-CEEEEEE------------CCSSCEEEEEECTTS
T ss_pred ---EEEEecCCCCCeEEEEECCCC--CEEEEEeCCCEEEEEeCCC-CEEEEec------------CCCCCeEEEEECCCC
Confidence 22334 488899999999999 8999999999999999653 2221222 244679999999999
Q ss_pred eEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEE
Q 000992 460 LLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAF 539 (1196)
Q Consensus 460 ~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 539 (1196)
++|++++.+ ..+.+|+.. + .. +.....+.+.|..+.++| ++..++
T Consensus 439 ~~l~~~~~d--~~v~~w~~~--~----------------------------~~--~~~~~~~~~~v~~~~~sp-d~~~la 483 (577)
T 2ymu_A 439 QTIASASDD--KTVKLWNRN--G----------------------------QL--LQTLTGHSSSVRGVAFSP-DGQTIA 483 (577)
T ss_dssp SEEEEEETT--SEEEEEETT--S----------------------------CE--EEEEECCSSCEEEEEECT-TSCEEE
T ss_pred CEEEEEcCC--CEEEEEECC--C----------------------------CE--EEEEcCCCCCEEEEEEcC-CCCEEE
Confidence 999998775 578888751 2 01 122345678899999998 899999
Q ss_pred EEeeCCeEEEEecc
Q 000992 540 LQFHGGKISEYMSR 553 (1196)
Q Consensus 540 ~~~~dG~v~~~~~~ 553 (1196)
....||+|..|+..
T Consensus 484 s~~~d~~i~iw~~~ 497 (577)
T 2ymu_A 484 SASDDKTVKLWNRN 497 (577)
T ss_dssp EEETTSEEEEEETT
T ss_pred EEeCCCEEEEEcCC
Confidence 99999999999753
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.1e-35 Score=365.02 Aligned_cols=432 Identities=14% Similarity=0.139 Sum_probs=327.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccce------e---eccccc--------------------cccccC
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASI------K---TAISAE--------------------IEHIDL 72 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~------~---~~~~~~--------------------l~~~~~ 72 (1196)
.+.+++|.+++..|.+++.++.+..|+.. ....... + ..-|.. ......
T Consensus 100 ~v~~~~~s~d~~~l~~~~~d~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (577)
T 2ymu_A 100 SVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 177 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT--CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEcCCCceeecccc--cceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeecc
Confidence 78899999999999999999999999863 1111000 0 000000 000001
Q ss_pred CCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 73 EPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 73 ~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
...+.|..+.|+|+++.|++++.||.|++|+..+..+..+..|.+.|.+++|||||++|++++.|++|++|+.....+..
T Consensus 178 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~ 257 (577)
T 2ymu_A 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 257 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred CCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEE
Confidence 11467899999999999999999999999998877666666678999999999999999999999999999866554432
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
.. +|...+.+++|+|||++|+ +++ .+++|++||. +|++.....+|.+.+.+++|+|
T Consensus 258 ~~----------------~~~~~v~~v~~~~d~~~l~-~~~------~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~ 313 (577)
T 2ymu_A 258 LT----------------GHSSSVNGVAFRPDGQTIA-SAS------DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP 313 (577)
T ss_dssp EC----------------CCSSCEEEEEECTTSSEEE-EEE------TTSCEEEEET-TSCEEEEECCCSSCEEEEEECT
T ss_pred Ee----------------cCCCCEEEEEEcCCCCEEE-EEe------CCCEEEEEeC-CCcEEEEEecCCCCeEEEEECC
Confidence 22 4556789999999999999 565 4689999999 8999999999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
+|++||+++.++ .|++|+.++..... +.. +...|.+++|+|||+.||+++.|+ +|++|+.... +.
T Consensus 314 ~~~~l~t~~~d~------~i~~w~~~~~~~~~--~~~-~~~~v~~~~~s~~g~~l~~~~~dg---~v~~~~~~~~---~~ 378 (577)
T 2ymu_A 314 DGQTIASASDDK------TVKLWNRNGQHLQT--LTG-HSSSVWGVAFSPDGQTIASASDDK---TVKLWNRNGQ---LL 378 (577)
T ss_dssp TSSEEEEEETTS------CEEEEETTSCEEEE--ECC-CSSCEEEEEECTTSSEEEEEETTS---EEEEEETTCC---EE
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCeeEE--EeC-CCCCEEEEEECCCCCEEEEEeCCC---EEEEEcCCCC---EE
Confidence 999999999864 69999998765432 333 356799999999999999999999 9999997643 23
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEE--------------EEeee--cCCCeeEEEEcCCEEEEeeccc
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF--------------IWTTA--VMENSTALVIDGSKILVTPLSL 376 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~--------------~~~~~--~~d~~~v~viDg~~l~lt~l~~ 376 (1196)
..+..+......+.|+|++.. |.+++.+|.+.+++. ++.++ |++..++...++.++++|+...
T Consensus 379 ~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~ 457 (577)
T 2ymu_A 379 QTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG 457 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred EEecCCCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 445444444488999999875 666666776654321 11222 4444556666777899998643
Q ss_pred cCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEE
Q 000992 377 SLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIW 455 (1196)
Q Consensus 377 ~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~ 455 (1196)
. ....+ .|...|.+++|+||+ +.||+++.|++|++|+.++ .+...+. .|.+.|..++|
T Consensus 458 ~------~~~~~~~~~~~v~~~~~spd~--~~las~~~d~~i~iw~~~~-~~~~~~~------------~h~~~v~~l~~ 516 (577)
T 2ymu_A 458 Q------LLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNRNG-QLLQTLT------------GHSSSVRGVAF 516 (577)
T ss_dssp C------EEEEEECCSSCEEEEEECTTS--CEEEEEETTSEEEEEETTS-CEEEEEE------------CCSSCEEEEEE
T ss_pred C------EEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCEEEEEcCCC-CEEEEEe------------CCCCCEEEEEE
Confidence 2 22334 588999999999999 8999999999999999753 2332233 34568999999
Q ss_pred ecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCC
Q 000992 456 LGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKK 535 (1196)
Q Consensus 456 ~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 535 (1196)
+|||++||+++.+ ..+.+|+. ++ .. +.....+.+.|..+.++| ++
T Consensus 517 s~dg~~l~s~~~d--g~v~lwd~--~~----------------------------~~--~~~~~~h~~~v~~~~fs~-dg 561 (577)
T 2ymu_A 517 SPDGQTIASASDD--KTVKLWNR--NG----------------------------QL--LQTLTGHSSSVWGVAFSP-DG 561 (577)
T ss_dssp CTTSSCEEEEETT--SEEEEECT--TS----------------------------CE--EEEEECCSSCEEEEEECT-TS
T ss_pred cCCCCEEEEEECc--CEEEEEeC--CC----------------------------CE--EEEEcCCCCCEEEEEEcC-CC
Confidence 9999999998875 57888864 22 11 123456788999999998 89
Q ss_pred ceEEEEeeCCeEEEEe
Q 000992 536 YSAFLQFHGGKISEYM 551 (1196)
Q Consensus 536 ~~~~~~~~dG~v~~~~ 551 (1196)
..++....||+|..|+
T Consensus 562 ~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 562 QTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEeCCCEEEEeC
Confidence 9999999999999884
No 5
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-34 Score=367.33 Aligned_cols=685 Identities=13% Similarity=0.058 Sum_probs=418.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.++.|..|+. .++.. +.+ +.++ .+.|.+++|+|+++.|++++.||+|++
T Consensus 57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~--~~~~~---~~~----~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNY--NTGEK---VVD----FEAH----PDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (814)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEET--TTCCE---EEE----EECC----SSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEEC--CCCcE---EEE----EecC----CCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence 7899999999999999999999999998 44443 111 3333 368999999999999999999999999
Q ss_pred EECCCC-eE-EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeE
Q 000992 102 HSVDGN-AT-EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 102 w~~~~~-~~-e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
|+.+++ .. .....|...|.+++||| ||+.|++++.||+|.+|+.. ..+...... .+...+.
T Consensus 124 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---------------~~~~~v~ 188 (814)
T 3mkq_A 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT---------------GQERGVN 188 (814)
T ss_dssp EEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC---------------CCTTCCC
T ss_pred EECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec---------------CCCCCEE
Confidence 999875 33 35556789999999999 99999999999999999732 222221111 1225678
Q ss_pred EEEEcc--CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 178 PISWRG--DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 178 ~isWsp--DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
.++|+| ||.+|+ +++ .+++|++||..+|+...+..+|.+.+.+++|+|+|++|++++.++ .|++|
T Consensus 189 ~~~~~~~~~~~~l~-~~~------~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~v~vw 255 (814)
T 3mkq_A 189 YVDYYPLPDKPYMI-TAS------DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG------TLKIW 255 (814)
T ss_dssp EEEECCSTTCCEEE-EEC------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS------CEEEE
T ss_pred EEEEEECCCCCEEE-EEe------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC------eEEEE
Confidence 999999 999999 565 468999999989999999999999999999999999999999864 69999
Q ss_pred eCCC-eeEEEEEeccCCCCcEEEEEEccCCC--eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCC
Q 000992 256 ERNG-LERSSFDINEQIDSTVELLKWNCMSD--LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKP 332 (1196)
Q Consensus 256 e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~--~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~ 332 (1196)
+.+. .... .+.. +...|..++|+|+|. ++|++..++ +.+|+..+... .+.|+|++.
T Consensus 256 d~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--------------~~~~~~~g~ 314 (814)
T 3mkq_A 256 NSSTYKVEK--TLNV-GLERSWCIATHPTGRKNYIASGFDNG----FTVLSLGNDEP--------------TLSLDPVGK 314 (814)
T ss_dssp ETTTCSEEE--EECC-SSSSEEEEEECTTCGGGEEEEEETTE----EEEEECSCCSC--------------CEEECSSSE
T ss_pred ECCCCcEEE--Eeec-CCCcEEEEEEccCCCceEEEEEeCCC----EEEEEcCCCCc--------------eeEECCCCC
Confidence 9653 3333 2332 345799999999998 466666554 88998765321 122333322
Q ss_pred ceEEEEecCC-------------------c-------------EEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCC
Q 000992 333 LQLICWTLDG-------------------Q-------------ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 380 (1196)
Q Consensus 333 ~~L~~~~~~g-------------------~-------------~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vp 380 (1196)
. +.....++ . .......|+ |++. .+++..++.+.+|.+..+.
T Consensus 315 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--pdg~-~la~~~~~~~~i~~~~~~~-- 388 (814)
T 3mkq_A 315 L-VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHS--PNGR-FVTVVGDGEYVIYTALAWR-- 388 (814)
T ss_dssp E-EEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEEC--TTSS-EEEEEETTEEEEEETTTTE--
T ss_pred E-EEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEEC--CCCC-EEEEecCCEEEEEECcccc--
Confidence 1 11110000 0 000111121 3333 3444445677788764321
Q ss_pred CCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCC-
Q 000992 381 PPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH- 459 (1196)
Q Consensus 381 ppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~- 459 (1196)
..+.+.|.+++|||+| +.+|+++.+|+|++|+.- .| +...+..++|+|+|
T Consensus 389 -------~~~~~~i~~~~~spdg--~~la~~~~~g~v~l~~~~--------~~------------~~~~v~~~~~s~dg~ 439 (814)
T 3mkq_A 389 -------NKAFGKCQDFVWGPDS--NSYALIDETGQIKYYKNF--------KE------------VTSWSVPMHSAIDRL 439 (814)
T ss_dssp -------EEEEEECSEEEECTTS--SCEEEECTTCCEEEEETT--------EE------------CTTCCCCCSSCCCEE
T ss_pred -------ccCCCceEEEEEeCCC--CeEEEEeCCCcEEEEECC--------CC------------ccceEEcCCcCccce
Confidence 1234567899999999 899999999999999742 12 12345667888998
Q ss_pred --eEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCce
Q 000992 460 --LLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYS 537 (1196)
Q Consensus 460 --~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 537 (1196)
..|++++.+ ..+.+|++.- + ..+ ..+......+.++| ++..
T Consensus 440 ~~~~l~~~~~d--~~v~~~d~~~-~----------------------------~~~-----~~~~~~~~~v~~s~-dg~~ 482 (814)
T 3mkq_A 440 FSGALLGVKSD--GFVYFFDWDN-G----------------------------TLV-----RRIDVNAKDVIWSD-NGEL 482 (814)
T ss_dssp ECSSSEEEEET--TEEEEECTTT-C----------------------------CEE-----EEESSCEEEEEECT-TSSE
T ss_pred ecceEEEEecC--CEEEEEECCc-C----------------------------cEE-----EEEecCCCEEEEcC-CCCE
Confidence 245555443 5788887620 1 011 11122222677888 8888
Q ss_pred EEEE------eeCCeEEEEeccc-c---ccC---CCCCCCCCCCCCCCCce-eEEEecCCCCCccEEEEEcCCCceEeCC
Q 000992 538 AFLQ------FHGGKISEYMSRV-G---LTG---GALTHDDASFPSSCPWM-NVVSVGTNGPLKPLLFGLDDGGRLHVSG 603 (1196)
Q Consensus 538 ~~~~------~~dG~v~~~~~~~-~---~~~---~~~~~~~~~fp~~c~~~-~~~~~~~~~~~~~~~~gL~~~~~L~~n~ 603 (1196)
+++. ..++.++.+...+ . +.. .+.++..-.|...|..- .+....|.+ .+.+--++.+++.
T Consensus 483 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~---~~~i~~t~~~~~~--- 556 (814)
T 3mkq_A 483 VMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVG---DVFIFTTATNRLN--- 556 (814)
T ss_dssp EEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEET---TEEEEECTTSEEE---
T ss_pred EEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEeC---CEEEEEcCCCeEE---
Confidence 8888 4444443332111 0 000 00000001111111000 000000001 1111111122221
Q ss_pred EEeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccccccccCCCEEEEE
Q 000992 604 KIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGV 683 (1196)
Q Consensus 604 ~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vErGs~iV~~ 683 (1196)
+.+..+ ...+.+..+.+.. .+-+-.|.+|+.+
T Consensus 557 ---------~~~~~~-------~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~ 588 (814)
T 3mkq_A 557 ---------YFVGGK-------TYNLAHYTKEMYL--------------------------------LGYLARDNKVYLA 588 (814)
T ss_dssp ---------EEETTE-------EEEEEECSSCCEE--------------------------------EEEEGGGTEEEEE
T ss_pred ---------EEeCCe-------eEEEEECCccEEE--------------------------------EEEEecCCEEEEE
Confidence 111112 1111111111111 0111234455554
Q ss_pred ecCCccEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHH-HHHhccccceeeeecccHHHHHHhHHHHHHhcCCc
Q 000992 684 LHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALV-MVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNL 762 (1196)
Q Consensus 684 ~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~-~~R~hRIdlNll~D~~~p~~F~~~~~~Fv~qv~~~ 762 (1196)
-... --.+++++-.-++ .+..+..++|.+|.. ++ ..
T Consensus 589 d~~~-~~~~~~l~~~~~~-----------~~~~~~~~~~~~a~~~~l---------------------------~~---- 625 (814)
T 3mkq_A 589 DREV-HVYGYEISLEVLE-----------FQTLTLRGEIEEAIENVL---------------------------PN---- 625 (814)
T ss_dssp CTTC-CEEEEECCHHHHH-----------HHHHHHTTCHHHHHHHTG---------------------------GG----
T ss_pred cCCC-CEEEEEECcHHHH-----------HhHHHHhCCHHHHHHHHH---------------------------hc----
Confidence 4222 2334444432111 234455566666522 11 00
Q ss_pred chHHHHHhhccCCcccccccccccccCCC-ccccccCCCcccccCcCCCcHHHHHHHHHHHHhhcCCCCCCchhhhhhhh
Q 000992 763 SYITEFVCAINNENITETLYKKFQFLSLP-CREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTL 841 (1196)
Q Consensus 763 ~~l~lFls~L~~edvt~t~Y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~l~~~~~~~~~~~~~ilT~~ 841 (1196)
+ + . +.+ +.+...|++. .
T Consensus 626 -------------------------i--~~~-----------------~~~----~~~~~~l~~~-----~--------- 643 (814)
T 3mkq_A 626 -------------------------V--EGK-----------------DSL----TKIARFLEGQ-----E--------- 643 (814)
T ss_dssp -------------------------C--CCH-----------------HHH----HHHHHHHHHT-----T---------
T ss_pred -------------------------C--Cch-----------------HHH----HHHHHHHHhC-----C---------
Confidence 0 0 0 001 1122222221 0
Q ss_pred hhcCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccChhHHHHHHHHhcCCcchh
Q 000992 842 ARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEF 921 (1196)
Q Consensus 842 ~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD~~lal~vAq~sq~DpkeY 921 (1196)
..+.||+.. .|...-|+.||.+-+|+.|+.+|+.. .+|
T Consensus 644 ------~~~~a~~~~--------------------------------~~~~~~f~~~l~~~~~~~A~~~~~~~-~~~--- 681 (814)
T 3mkq_A 644 ------YYEEALNIS--------------------------------PDQDQKFELALKVGQLTLARDLLTDE-SAE--- 681 (814)
T ss_dssp ------CHHHHHHHC--------------------------------CCHHHHHHHHHHHTCHHHHHHHHTTC-CCH---
T ss_pred ------ChHHheecC--------------------------------CCcchheehhhhcCCHHHHHHHHHhh-CcH---
Confidence 034444432 12233366777788888877776543 222
Q ss_pred hHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc---CCcHHHHHHHHHHHH
Q 000992 922 LPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWAD 998 (1196)
Q Consensus 922 lpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~---~d~~~~~~i~~~~A~ 998 (1196)
..|+++.+...+.|+ ++.|.+.+.+. +.|..+..|+ .+++. +.+.|+
T Consensus 682 -----------------------~~W~~la~~al~~~~--~~~A~~~y~~~-~d~~~l~~l~~~~~~~~~----~~~~~~ 731 (814)
T 3mkq_A 682 -----------------------MKWRALGDASLQRFN--FKLAIEAFTNA-HDLESLFLLHSSFNNKEG----LVTLAK 731 (814)
T ss_dssp -----------------------HHHHHHHHHHHHTTC--HHHHHHHHHHH-TCHHHHHHHHHHTTCHHH----HHHHHH
T ss_pred -----------------------hHHHHHHHHHHHcCC--HHHHHHHHHHc-cChhhhHHHHHHcCCHHH----HHHHHH
Confidence 246667777777766 78888888887 8888888887 44443 345578
Q ss_pred HHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHH
Q 000992 999 HLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAK 1071 (1196)
Q Consensus 999 ~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~ 1071 (1196)
-.+..++++.|..+|.++|++++|+++|.+.++|.+|+.+|+.++...+.+..+..+.+++|.+.|++..|..
T Consensus 732 ~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~ 804 (814)
T 3mkq_A 732 DAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVSER 804 (814)
T ss_dssp HHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHTT
T ss_pred HHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHHHh
Confidence 8888999999999999999999999999999999999999999875543488999999999999999765544
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.3e-35 Score=366.64 Aligned_cols=392 Identities=11% Similarity=0.073 Sum_probs=286.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC----C
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS----G 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d----G 97 (1196)
.+.+++|.|++..|.+++.|+.|..||. .+++.... .+ +..| .+.|.+++|+|||+.|++++.+ |
T Consensus 61 ~v~~~~~spdg~~lasg~~d~~v~lWd~--~~~~~~~~-~~----~~~~----~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGDVHGNVRIWDT--TQTTHILK-TT----IPVF----SGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEES--SSTTCCEE-EE----EECS----SSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ceEEEEECCCCcEEEEEeCCCCEEEeEC--CCCcceee-Ee----eccc----CCceEEEEECCCCCEEEEEECCCCcee
Confidence 7899999999999999999999999998 43332111 11 2333 3689999999999999999876 5
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCC
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
+|++||... ....+..|.+.|.+++|||||. .||+++.|++|++|+. .+.... .+.+|.+.
T Consensus 130 ~v~~wd~~~-~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~----------------~l~~H~~~ 192 (611)
T 1nr0_A 130 HVFLFDTGT-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS----------------TFGEHTKF 192 (611)
T ss_dssp EEEETTTCC-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE----------------EECCCSSC
T ss_pred EEEEeeCCC-CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee----------------eeccccCc
Confidence 788888533 2223344689999999999997 5999999999999862 222111 12367788
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-------cCCCceeEEEEcCCCCeEEEEecCCCCCC
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-------LKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-------~~~~~v~slawsPdG~~IAs~s~d~~~~~ 248 (1196)
|.+++|+|||++|| +++ .|++|||||..+|+...++. +|.+.+.+++|+|||++||+++.|
T Consensus 193 V~~v~fspdg~~la-s~s------~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D----- 260 (611)
T 1nr0_A 193 VHSVRYNPDGSLFA-STG------GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD----- 260 (611)
T ss_dssp EEEEEECTTSSEEE-EEE------TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-----
T ss_pred eEEEEECCCCCEEE-EEE------CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC-----
Confidence 99999999999999 565 47999999988999988874 789999999999999999999986
Q ss_pred CCeEEEEeCC-CeeEEEEEe----------------------------------------ccCCCCcEEEEEEccCCCee
Q 000992 249 CPSIVFYERN-GLERSSFDI----------------------------------------NEQIDSTVELLKWNCMSDLL 287 (1196)
Q Consensus 249 ~~~V~~~e~n-Gl~~~~f~l----------------------------------------~~~~~~~V~~laWSpDg~~L 287 (1196)
.+|++|+.. |.....+.. ...+...|.+++|||||++|
T Consensus 261 -~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l 339 (611)
T 1nr0_A 261 -KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL 339 (611)
T ss_dssp -SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred -CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEE
Confidence 469999954 433322210 01245679999999999999
Q ss_pred EEEEccCCcceEEEEEecCCEEEEE-----------------------------------------------------EE
Q 000992 288 AAVVRFEEYDSVKICFFSNNHWYLK-----------------------------------------------------YE 314 (1196)
Q Consensus 288 As~~~d~~~~~V~lW~~~n~~wylk-----------------------------------------------------q~ 314 (1196)
|+++.|+ +|++|++.+...... ..
T Consensus 340 ~s~s~D~---~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 416 (611)
T 1nr0_A 340 FSADAEG---HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 416 (611)
T ss_dssp EEEETTS---CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred EEEeCCC---cEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcE
Confidence 9999999 999999764321000 00
Q ss_pred EEEecC---------------------------CcEEEEEccCCCceEEEEecCCcEEEEEEE----------------E
Q 000992 315 IRYLRR---------------------------DGIRFMWHPTKPLQLICWTLDGQITTYNFI----------------W 351 (1196)
Q Consensus 315 l~~~~~---------------------------~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~----------------~ 351 (1196)
+.+.++ ...++.|+|++.. |++++.+|.+..++.. +
T Consensus 417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~-lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~ 495 (611)
T 1nr0_A 417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF-VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 495 (611)
T ss_dssp EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCE-EEEEETTSEEEEEEEETTEEEEEEEEECSSCEE
T ss_pred EEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCE-EEEeCCCCeEEEEEccCCceeeeeccCCCCceE
Confidence 111111 1256889998864 7788888887766532 1
Q ss_pred eee--cCCCeeEEEEcCCEEEEeeccc-cCCCCCceeeeec-CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCc
Q 000992 352 TTA--VMENSTALVIDGSKILVTPLSL-SLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1196)
Q Consensus 352 ~~~--~~d~~~v~viDg~~l~lt~l~~-~~vpppm~~~~l~-~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~ 427 (1196)
.++ |++..+++...+.++++|.+.. ..+.. ..... |...|++|+||||| ++||+++.|++|++|+++++..
T Consensus 496 ~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~~V~~v~fspdg--~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 496 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTAKVACVSWSPDN--VRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTCTTS
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeecccceeEEEECCCC--CEEEEEECCCcEEEEECCCccc
Confidence 222 3444455666777899998763 11100 00123 88999999999999 8999999999999999986432
Q ss_pred c--ccccCCceeeeeeccccc-CCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 428 L--EDLEGTEFVVEACISETA-FGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 428 ~--~~~~g~~~~~~~~~~~~~-~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
. ..+. .| .+.|..++|+|+++ |++++.+ .++.+|++
T Consensus 571 ~~~~~~~------------~h~~~~v~~v~fs~d~~-l~s~~~D--~~i~lW~~ 609 (611)
T 1nr0_A 571 HPIIIKG------------AHAMSSVNSVIWLNETT-IVSAGQD--SNIKFWNV 609 (611)
T ss_dssp CCEEETT------------SSTTSCEEEEEEEETTE-EEEEETT--SCEEEEEC
T ss_pred ccchhhc------------cCcccCeeEEEEcCCCE-EEEecCC--CCEEEEec
Confidence 2 1222 23 46899999999999 8887765 68899976
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.7e-32 Score=334.10 Aligned_cols=446 Identities=12% Similarity=0.080 Sum_probs=306.8
Q ss_pred CccceecccccccccccCcccceeEEeeecCCCEEEEEeCCCcEEEEecccccc----cccceeeccccccccccCCCCC
Q 000992 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQN----ERASIKTAISAEIEHIDLEPGD 76 (1196)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ 76 (1196)
|.++.+.......|. ...+ .+.+++|+++++.|++++ ++.|..|++ .++ .. +.. +.+| .+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg~~l~~~~-~~~v~v~~~--~~~~~~~~~---~~~----~~~h----~~ 64 (615)
T 1pgu_A 1 MSSISLKEIIPPQPS-TQRN-FTTHLSYDPTTNAIAYPC-GKSAFVRCL--DDGDSKVPP---VVQ----FTGH----GS 64 (615)
T ss_dssp -CCEEEEEEECCCCC-CCTT-CCCCCEEETTTTEEEEEE-TTEEEEEEC--CSSCCSSCS---EEE----ECTT----TT
T ss_pred CCccchhhccCCCCC-CccC-ceeEEEECCCCCEEEEec-CCeEEEEEC--CCCCCcccc---ceE----EecC----CC
Confidence 667777665433322 2223 799999999999999998 567999999 443 21 111 3334 35
Q ss_pred C-EEEEEEcc--CCCEEEEEECCCcEEEEECCCC--------e-EEEeeeecCcEEEEEECCCCCEEEEEeCC----ceE
Q 000992 77 S-ITAFDYLM--EKEALIVGTSSGLLLLHSVDGN--------A-TEVVGRVEGGVRFISPSPDGDLLGVTTGF----GQI 140 (1196)
Q Consensus 77 ~-v~~v~~sp--d~~~La~as~dG~I~lw~~~~~--------~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d----~tV 140 (1196)
. |.+++|+| |++.|++++.||+|++|+..++ . ......|..+|.+++|||||++|++++.+ +.|
T Consensus 65 ~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v 144 (615)
T 1pgu_A 65 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF 144 (615)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred ceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEE
Confidence 7 99999999 9999999999999999999643 2 23445578899999999999999999988 688
Q ss_pred EEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 141 LVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 141 ~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
.+|+ ....+. .+.+|...+.+++|+|||+ +|+ +++ .+++|+|||..++++..++.
T Consensus 145 ~~~d-~~~~~~----------------~~~~~~~~v~~~~~~~~~~~~l~-~~~------~d~~v~vwd~~~~~~~~~~~ 200 (615)
T 1pgu_A 145 ISWD-SGNSLG----------------EVSGHSQRINACHLKQSRPMRSM-TVG------DDGSVVFYQGPPFKFSASDR 200 (615)
T ss_dssp EETT-TCCEEE----------------ECCSCSSCEEEEEECSSSSCEEE-EEE------TTTEEEEEETTTBEEEEEEC
T ss_pred EEEE-CCCcce----------------eeecCCccEEEEEECCCCCcEEE-EEe------CCCcEEEEeCCCcceeeeec
Confidence 7764 222221 1225667889999999998 677 454 46999999998999999999
Q ss_pred cCCC---ceeEEEEcCC-CCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEecc---CCCCcEEEEEEccCCCeeEEEE
Q 000992 220 LKAF---MGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINE---QIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 220 ~~~~---~v~slawsPd-G~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~---~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
+|.+ .+.+++|+|+ |++|++++.++ .|.+|+. +|.... .+.. .+...|.+++|+ |+++|++++
T Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~--~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 271 (615)
T 1pgu_A 201 THHKQGSFVRDVEFSPDSGEFVITVGSDR------KISCFDGKSGEFLK--YIEDDQEPVQGGIFALSWL-DSQKFATVG 271 (615)
T ss_dssp SSSCTTCCEEEEEECSTTCCEEEEEETTC------CEEEEETTTCCEEE--ECCBTTBCCCSCEEEEEES-SSSEEEEEE
T ss_pred ccCCCCceEEEEEECCCCCCEEEEEeCCC------eEEEEECCCCCEeE--EecccccccCCceEEEEEc-CCCEEEEEc
Confidence 8988 8999999999 99999999864 6999994 454433 2312 346789999999 999999999
Q ss_pred ccCCcceEEEEEecCCEEEEEEEEEEec----CCcEEEEEc---------------------------------------
Q 000992 292 RFEEYDSVKICFFSNNHWYLKYEIRYLR----RDGIRFMWH--------------------------------------- 328 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~~wylkq~l~~~~----~~~~~v~Ws--------------------------------------- 328 (1196)
.|+ +|++|+..+... .+.+..+. .....+.|+
T Consensus 272 ~d~---~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~ 346 (615)
T 1pgu_A 272 ADA---TIRVWDVTTSKC--VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT 346 (615)
T ss_dssp TTS---EEEEEETTTTEE--EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred CCC---cEEEEECCCCcE--EEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence 999 999999986543 12222210 000222221
Q ss_pred -cC---------------------------------CCceEEEEecCCcEEEEEEEE-----------------------
Q 000992 329 -PT---------------------------------KPLQLICWTLDGQITTYNFIW----------------------- 351 (1196)
Q Consensus 329 -p~---------------------------------~~~~L~~~~~~g~~~~~~~~~----------------------- 351 (1196)
|+ +. .|..++.+|.+..++..-
T Consensus 347 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 425 (615)
T 1pgu_A 347 VNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN 425 (615)
T ss_dssp TTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEET
T ss_pred ecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc-EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeC
Confidence 11 11 122222333332211110
Q ss_pred -------e------------------eecCCCeeEEEEc-CCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCC
Q 000992 352 -------T------------------TAVMENSTALVID-GSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSS 404 (1196)
Q Consensus 352 -------~------------------~~~~d~~~v~viD-g~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~ 404 (1196)
. +.+++..++.... ++.+++|++......+ ..+ .|...|.+++|+|+|
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~g- 500 (615)
T 1pgu_A 426 DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLRAKPSYISISPSE- 500 (615)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCSSCEEEEEECTTS-
T ss_pred CCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc----cccCCccCceEEEEECCCC-
Confidence 0 0000111122222 4455666554321100 222 478899999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEec----------CCeEEEEEecCCCCceE
Q 000992 405 KNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLG----------SHLLLSVSHHGPRHSNY 474 (1196)
Q Consensus 405 ~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~----------d~~lla~~~~~~~~~~~ 474 (1196)
+.||+++.||.|++|++.+......+.+ .+...+..++|+| ++.+||+++.+ ..+.
T Consensus 501 -~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d--g~i~ 566 (615)
T 1pgu_A 501 -TYIAAGDVMGKILLYDLQSREVKTSRWA-----------FRTSKINAISWKPAEKGANEEEIEEDLVATGSLD--TNIF 566 (615)
T ss_dssp -SEEEEEETTSCEEEEETTTTEEEECCSC-----------CCSSCEEEEEECCCC------CCSCCEEEEEETT--SCEE
T ss_pred -CEEEEcCCCCeEEEeeCCCCcceeEeec-----------CCCCceeEEEEcCccccccccccCCCEEEEEcCC--CcEE
Confidence 8999999999999999986544433222 1456899999999 99999998876 6889
Q ss_pred EEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEec
Q 000992 475 FRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~ 552 (1196)
+|++.-.+ .. +.....+.+.|..+.+++ ++. ++....||+|..|+.
T Consensus 567 iw~~~~~~----------------------------~~--~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 567 IYSVKRPM----------------------------KI--IKALNAHKDGVNNLLWET-PST-LVSSGADACIKRWNV 612 (615)
T ss_dssp EEESSCTT----------------------------CC--EEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEEE
T ss_pred EEECCCCc----------------------------ee--chhhhcCccceEEEEEcC-CCC-eEEecCCceEEEEee
Confidence 99873110 01 122345678899999988 777 989999999999965
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-31 Score=346.69 Aligned_cols=464 Identities=13% Similarity=0.089 Sum_probs=303.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|++++..|++++.|+.|+.|+. ...+. +.+ +. + ...|.+++|+| |+.|++++.||+|++
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~--~~~~~---~~~----~~-~----~~~V~~l~fsp-g~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQ--QQVEV---VIK----LE-D----RSAIKEMRFVK-GIYLVVINAKDTVYV 83 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECS--TTCEE---EEE----CS-S----CCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeC--CCcEE---EEE----cC-C----CCCEEEEEEcC-CCEEEEEECcCeEEE
Confidence 7999999999999999999999999998 33322 110 11 1 35799999999 889999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
||..++++ .... +.+.|++++|||||++||+++.||+|++|+..........+.... +. ...+.+|.+.|.+++
T Consensus 84 Wd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~--~~--~~~~~~h~~~V~sl~ 158 (902)
T 2oaj_A 84 LSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ--KS--SFFPAARLSPIVSIQ 158 (902)
T ss_dssp EETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHH--HH--HTCSSSCCCCCCEEE
T ss_pred EECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccc--cc--ccccccCCCCeEEEE
Confidence 99988654 3444 568899999999999999999999999997543222211110000 00 011236778899999
Q ss_pred EccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC------------------CCceeEEEEcCCCCeEEEEe
Q 000992 181 WRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK------------------AFMGAVLEWMPSGANIAAVY 241 (1196)
Q Consensus 181 WspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~------------------~~~v~slawsPdG~~IAs~s 241 (1196)
|+|+ +.+|+ +++ .+++| |||..+++...++..+ .+.+.+++|+|+|++||+++
T Consensus 159 ~sp~~~~~l~-~g~------~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs 230 (902)
T 2oaj_A 159 WNPRDIGTVL-ISY------EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH 230 (902)
T ss_dssp EETTEEEEEE-EEC------SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred EccCCCCEEE-EEe------CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence 9996 46777 565 46899 9999899988887655 46799999999999999999
Q ss_pred cCCCCCCCCeEEEEeC-CCeeEEEEEec---cC------------CCCcEEEEEEc----cCC-CeeEEEEccCC--cce
Q 000992 242 DRKSENKCPSIVFYER-NGLERSSFDIN---EQ------------IDSTVELLKWN----CMS-DLLAAVVRFEE--YDS 298 (1196)
Q Consensus 242 ~d~~~~~~~~V~~~e~-nGl~~~~f~l~---~~------------~~~~V~~laWS----pDg-~~LAs~~~d~~--~~~ 298 (1196)
.|+ .|++|+. +|.......+. .+ +...|.+++|+ ||+ .+||+++.+.. ..+
T Consensus 231 ~Dg------~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 231 EDN------SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp TTC------CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred CCC------eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 874 6999996 45432221121 11 13469999995 554 67888876631 126
Q ss_pred EEEEEecCCE-------------E---EEEEEEEEecC-CcEEEEEccC---------CCceEEEEecCCcEEEEEE---
Q 000992 299 VKICFFSNNH-------------W---YLKYEIRYLRR-DGIRFMWHPT---------KPLQLICWTLDGQITTYNF--- 349 (1196)
Q Consensus 299 V~lW~~~n~~-------------w---ylkq~l~~~~~-~~~~v~Wsp~---------~~~~L~~~~~~g~~~~~~~--- 349 (1196)
|++|+..... | ...+.+.+... ....+.+.|+ .+..+.+++.+|++..+++
T Consensus 305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g 384 (902)
T 2oaj_A 305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG 384 (902)
T ss_dssp EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence 8888853100 0 01122222111 1244555441 1223444455555544331
Q ss_pred -----------------------EE------------------------------eee--cCCCeeEEEEcCCEEEEeec
Q 000992 350 -----------------------IW------------------------------TTA--VMENSTALVIDGSKILVTPL 374 (1196)
Q Consensus 350 -----------------------~~------------------------------~~~--~~d~~~v~viDg~~l~lt~l 374 (1196)
.+ .++ ++...++....+++|++|++
T Consensus 385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~ 464 (902)
T 2oaj_A 385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA 464 (902)
T ss_dssp CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence 00 001 11223455667789999998
Q ss_pred cccCCCCC-ceeeee------cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccc--------c---------
Q 000992 375 SLSLMPPP-MYLFSL------KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLE--------D--------- 430 (1196)
Q Consensus 375 ~~~~vppp-m~~~~l------~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~--------~--------- 430 (1196)
.......+ .....+ .|...|++|+||||| +.||+++.||+|+||++.+..... .
T Consensus 465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg--~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (902)
T 2oaj_A 465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET--LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFS 542 (902)
T ss_dssp SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT--TEEEEEETTSCEEEEEEEECCC---------------CCSCC
T ss_pred CCccccCCceEEeechhhcCCCCCCceeEEEecCCC--CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecc
Confidence 76533222 111111 577899999999999 999999999999999987531100 0
Q ss_pred -ccCC----------------ceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhh
Q 000992 431 -LEGT----------------EFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEI 493 (1196)
Q Consensus 431 -~~g~----------------~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1196)
..++ ++.... ....+.+.|+.++|+||| +||+++.+ .++.+|++. + .
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~l~~h~~~V~svafSpdG-~lAsgs~D--~tv~lwd~~--~----------~ 606 (902)
T 2oaj_A 543 LNNTNGVLVDVRDRAPTGVRQGFMPST-AVHANKGKTSAINNSNIG-FVGIAYAA--GSLMLIDRR--G----------P 606 (902)
T ss_dssp GGGSSCSEEECGGGCCTTCSEEEEEEE-EECCCSCSEEEEEECBTS-EEEEEETT--SEEEEEETT--T----------T
T ss_pred ccCCccccccccccCCCCCCCccceeE-EEEcCCCcEEEEEecCCc-EEEEEeCC--CcEEEEECC--C----------C
Confidence 0000 001000 113466799999999999 99999876 688999862 1 0
Q ss_pred hhhcccccccccccccccceeeeeee-ccCCcEEEEecC-----CCC---CceEEEEeeCCeEEEEec
Q 000992 494 ELACSEDHVQGLLTCAGWHAKVSTQI-PLEGLVIAIAPN-----NAK---KYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-----~~~---~~~~~~~~~dG~v~~~~~ 552 (1196)
.++. ........ .+.+.|.++.++ + | +..++..+.||+|..|+.
T Consensus 607 ~~~~--------------~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 607 AIIY--------------MENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEE--------------EEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEE
T ss_pred eEEE--------------EeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecCCcEEEEEE
Confidence 0000 00001111 456779999888 6 5 378888999999999975
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-31 Score=357.15 Aligned_cols=454 Identities=12% Similarity=0.053 Sum_probs=323.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--d~~~La~as~dG~I 99 (1196)
.+.+++|++++..|++++.|+.|..||. .++.. +.+ +.++ .+.|.+++|+| ++..+++++.||+|
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~--~~~~~---~~~----~~~~----~~~v~~~~~~~~~~~~~l~sg~~d~~v 725 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDS--ATGKL---VHT----YDEH----SEQVNCCHFTNKSNHLLLATGSNDFFL 725 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEET--TTCCE---EEE----EECC----SSCEEEEEECSSSSCCEEEEEETTSCE
T ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEEC--CCCce---EEE----EcCC----CCcEEEEEEecCCCceEEEEEeCCCeE
Confidence 7899999999999999999999999999 55443 121 3333 46899999999 45689999999999
Q ss_pred EEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeeccccc------------------
Q 000992 100 LLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELA------------------ 159 (1196)
Q Consensus 100 ~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~------------------ 159 (1196)
++||..++.. .....|.+.|.+++|||||++||+++.||+|++|+. ..............
T Consensus 726 ~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1249)
T 3sfz_A 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805 (1249)
T ss_dssp EEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC
T ss_pred EEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE
Confidence 9999998765 355567899999999999999999999999999973 23222222111000
Q ss_pred ---Cccccc------------------cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe
Q 000992 160 ---EGFDVH------------------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 160 ---~~~~Vs------------------~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~ 218 (1196)
++..+- .....+|...+.+++|+|||.+++ +++ .+++|++||..+|......
T Consensus 806 ~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~------~dg~v~vwd~~~~~~~~~~ 878 (1249)
T 3sfz_A 806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV-IAL------SQYCVELWNIDSRLKVADC 878 (1249)
T ss_dssp BCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEE-EEC------SSSCEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEE-EEe------CCCeEEEEEcCCCceeeec
Confidence 000000 000116778899999999999999 565 4689999999999999999
Q ss_pred ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe-------eEEE-----------------------EEec
Q 000992 219 ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL-------ERSS-----------------------FDIN 268 (1196)
Q Consensus 219 e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl-------~~~~-----------------------f~l~ 268 (1196)
.+|.+.+.+++|+|+|++|++++.|+ .|++|+..+. .... +...
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQ------TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK 952 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEES
T ss_pred CCCccceEEEEECCCCCEEEEEeCCC------eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecC
Confidence 99999999999999999999999864 6999984310 0000 0000
Q ss_pred -----cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCc
Q 000992 269 -----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1196)
Q Consensus 269 -----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1196)
......|..++|||+|+.+|+++.++ .|++|+..+... ...+..+......+.|+|++.. |..++.+|.
T Consensus 953 ~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g---~i~i~d~~~~~~--~~~~~~h~~~v~~l~~s~dg~~-l~s~~~dg~ 1026 (1249)
T 3sfz_A 953 TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG---AIKIIELPNNRV--FSSGVGHKKAVRHIQFTADGKT-LISSSEDSV 1026 (1249)
T ss_dssp SCCEEEECCSCEEEEEECTTSSEEEEEETTS---CCEEEETTTTSC--EEECCCCSSCCCCEEECSSSSC-EEEECSSSB
T ss_pred cceEEEcccCcEEEEEEcCCCCEEEEEcCCC---CEEEEEcCCCce--eeecccCCCceEEEEECCCCCE-EEEEcCCCE
Confidence 01134689999999999999999999 899999987653 2233333333478999999875 777777888
Q ss_pred EEEEEEE--------------Eeeec-CCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCE
Q 000992 344 ITTYNFI--------------WTTAV-MENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNC 407 (1196)
Q Consensus 344 ~~~~~~~--------------~~~~~-~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~ 407 (1196)
+.++++. ..+.+ .+..+++...++++++|++..... ..++ .|.+.|.+++|+|++ +.
T Consensus 1027 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~~~v~~~~~s~d~--~~ 1099 (1249)
T 3sfz_A 1027 IQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI-----ERDFTCHQGTVLSCAISSDA--TK 1099 (1249)
T ss_dssp EEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC-----CEEEECCSSCCCCEEECSSS--SS
T ss_pred EEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce-----eEEEcccCCcEEEEEECCCC--CE
Confidence 7654421 11111 233455666677899998865432 2334 478899999999999 89
Q ss_pred EEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCcccc
Q 000992 408 LAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLG 487 (1196)
Q Consensus 408 lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~ 487 (1196)
||+++.||+|++|+..+..+...+.| +...|..++|+|+|.+||+++.+ ..+.+|++.- +.
T Consensus 1100 l~s~s~d~~v~iwd~~~~~~~~~l~~------------h~~~v~~~~~s~dg~~lat~~~d--g~i~vwd~~~-~~---- 1160 (1249)
T 3sfz_A 1100 FSSTSADKTAKIWSFDLLSPLHELKG------------HNGCVRCSAFSLDGILLATGDDN--GEIRIWNVSD-GQ---- 1160 (1249)
T ss_dssp CEEECCSSCCCEECSSSSSCSBCCCC------------CSSCEEEEEECSSSSEEEEEETT--SCCCEEESSS-SC----
T ss_pred EEEEcCCCcEEEEECCCcceeeeecc------------CCCcEEEEEECCCCCEEEEEeCC--CEEEEEECCC-Cc----
Confidence 99999999999999987655534433 34579999999999999998865 5788998731 10
Q ss_pred chhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEecc
Q 000992 488 FYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1196)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~ 553 (1196)
.+.. ............+.+.|..+++++ ++..++.. +|.|..|+..
T Consensus 1161 -------~~~~----------~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~s~--~g~v~vwd~~ 1206 (1249)
T 3sfz_A 1161 -------LLHS----------CAPISVEEGTATHGGWVTDVCFSP-DSKTLVSA--GGYLKWWNVA 1206 (1249)
T ss_dssp -------CCCC----------CCCCC-------CCSCCCEEEECT-TSSCEEEE--SSSEEEBCSS
T ss_pred -------eEEE----------eccccccccccccCceEEEEEECC-CCCEEEEC--CCeEEEEECC
Confidence 0000 000000011134567788899988 77777654 5999999753
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.1e-30 Score=348.06 Aligned_cols=426 Identities=11% Similarity=0.056 Sum_probs=314.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.|+.|..|+. .+++. +.+ +.+| .+.|.+++|+|||+.||+++.||+|++
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~--~~~~~---~~~----~~~h----~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGADKTLQVFKA--ETGEK---LLD----IKAH----EDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET--TTCCE---EEE----ECCC----SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEC--CCCCE---EEE----eccC----CCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence 7899999999999999999999999999 45443 222 3333 468999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECC--CCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSP--Dg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
||..+++. .....|.+.|.+++|+| ++.+|++++.|++|++|+.. ...+.. +.+|.+.+.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~----------------~~~h~~~v~ 747 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT----------------MFGHTNSVN 747 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE----------------ECCCSSCEE
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe----------------ecCCCCCEE
Confidence 99988764 45556789999999999 55689999999999998732 222211 225667899
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-------------CCCceeEEEEcCCCCeEEEEecCC
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-------------KAFMGAVLEWMPSGANIAAVYDRK 244 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-------------~~~~v~slawsPdG~~IAs~s~d~ 244 (1196)
+++|+|||++|+ +++ .|++|++||..+++....... ....+.+++|+|+|+.|++++.
T Consensus 748 ~~~~sp~~~~l~-s~s------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-- 818 (1249)
T 3sfz_A 748 HCRFSPDDELLA-SCS------ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK-- 818 (1249)
T ss_dssp EEEECSSTTEEE-EEE------SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET--
T ss_pred EEEEecCCCEEE-EEE------CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC--
Confidence 999999999999 565 468999999988877665431 2236789999999999999874
Q ss_pred CCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcE
Q 000992 245 SENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI 323 (1196)
Q Consensus 245 ~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~ 323 (1196)
..|.+|+.. |..... +...+...|..++|+|+|.++++++.++ +|++|+..+... ...+..+.....
T Consensus 819 -----~~v~~~d~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~v~vwd~~~~~~--~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 819 -----NKVLLFDIHTSGLLAE--IHTGHHSTIQYCDFSPYDHLAVIALSQY---CVELWNIDSRLK--VADCRGHLSWVH 886 (1249)
T ss_dssp -----TEEEEEETTTCCEEEE--EECSSSSCCCEEEECSSTTEEEEECSSS---CEEEEETTTTEE--EEEECCCSSCEE
T ss_pred -----CcEEEEEecCCCceeE--EcCCCCCceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCce--eeecCCCccceE
Confidence 469999854 333222 2333456899999999999999999999 999999987642 233444433448
Q ss_pred EEEEccCCCceEEEEecCCcEEEEEEE----------------------------------------------------E
Q 000992 324 RFMWHPTKPLQLICWTLDGQITTYNFI----------------------------------------------------W 351 (1196)
Q Consensus 324 ~v~Wsp~~~~~L~~~~~~g~~~~~~~~----------------------------------------------------~ 351 (1196)
.+.|+|++.. +.+++.+|.+..++.. .
T Consensus 887 ~v~~spdg~~-l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 965 (1249)
T 3sfz_A 887 GVMFSPDGSS-FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS 965 (1249)
T ss_dssp EEEECTTSSE-EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred EEEECCCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence 8999998875 7777778888765410 0
Q ss_pred eee--cCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000992 352 TTA--VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML 428 (1196)
Q Consensus 352 ~~~--~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~ 428 (1196)
.+. +++..+++...++.+.+|++.... ....+ .|...|.+++|+|+| +.|++++.||+|++|++.+....
T Consensus 966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~-----~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 966 CCCLSPHLEYVAFGDEDGAIKIIELPNNR-----VFSSGVGHKKAVRHIQFTADG--KTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCCEEEETTTTS-----CEEECCCCSSCCCCEEECSSS--SCEEEECSSSBEEEEETTTTEEE
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcCCCc-----eeeecccCCCceEEEEECCCC--CEEEEEcCCCEEEEEECCCCceE
Confidence 011 222333444455567777764322 22233 488899999999999 89999999999999999864332
Q ss_pred ccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccc
Q 000992 429 EDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTC 508 (1196)
Q Consensus 429 ~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1196)
.+. .+...+..++|+|++.+++.+.+ ..+.+|++.. +
T Consensus 1039 -~~~------------~~~~~v~~~~~~~~~~l~~~~~d---g~v~vwd~~~-~-------------------------- 1075 (1249)
T 3sfz_A 1039 -FLQ------------AHQETVKDFRLLQDSRLLSWSFD---GTVKVWNVIT-G-------------------------- 1075 (1249)
T ss_dssp -CCB------------CCSSCEEEEEECSSSEEEEEESS---SEEEEEETTT-T--------------------------
T ss_pred -EEe------------cCCCcEEEEEEcCCCcEEEEECC---CcEEEEECCC-C--------------------------
Confidence 111 23468999999999987655443 5788887621 1
Q ss_pred cccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEecc
Q 000992 509 AGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1196)
Q Consensus 509 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~ 553 (1196)
.. ......+.+.|.++.+++ ++..++....||+|..|+..
T Consensus 1076 --~~--~~~~~~~~~~v~~~~~s~-d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1076 --RI--ERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp --CC--CEEEECCSSCCCCEEECS-SSSSCEEECCSSCCCEECSS
T ss_pred --ce--eEEEcccCCcEEEEEECC-CCCEEEEEcCCCcEEEEECC
Confidence 00 112234567788888888 88999999999999999754
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-31 Score=308.32 Aligned_cols=293 Identities=16% Similarity=0.145 Sum_probs=213.3
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE----EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE----VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e----~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
+.|.+++|+|||+.||+++.||+|+|||..++... ....|.+.|.+++|||||++||+++.|++|++|+..-...
T Consensus 17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~- 95 (345)
T 3fm0_A 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF- 95 (345)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-
Confidence 47999999999999999999999999999876432 2245788999999999999999999999999986432110
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC---cEEEEeccCCCceeEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVL 228 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~~e~~~~~v~sl 228 (1196)
.... .+.+|.+.|.+++|+|||++|| +++ .|++|+|||..++ ++.....+|...+.++
T Consensus 96 -~~~~-----------~~~~h~~~v~~v~~sp~~~~l~-s~s------~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (345)
T 3fm0_A 96 -ECVT-----------TLEGHENEVKSVAWAPSGNLLA-TCS------RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV 156 (345)
T ss_dssp -EEEE-----------EECCCSSCEEEEEECTTSSEEE-EEE------TTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred -EEEE-----------EccCCCCCceEEEEeCCCCEEE-EEE------CCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence 0111 2336778899999999999999 565 4689999998665 3456778899999999
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC-
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN- 306 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n- 306 (1196)
+|+|+|++||+++.|. .|++|+... .......+.. +...|.+|+|||||++||+++.|+ +|+||+...
T Consensus 157 ~~~p~~~~l~s~s~d~------~i~~w~~~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~l~s~s~D~---~v~iW~~~~~ 226 (345)
T 3fm0_A 157 VWHPSQELLASASYDD------TVKLYREEEDDWVCCATLEG-HESTVWSLAFDPSGQRLASCSDDR---TVRIWRQYLP 226 (345)
T ss_dssp EECSSSSCEEEEETTS------CEEEEEEETTEEEEEEEECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEEEECT
T ss_pred EECCCCCEEEEEeCCC------cEEEEEecCCCEEEEEEecC-CCCceEEEEECCCCCEEEEEeCCC---eEEEeccccC
Confidence 9999999999999864 699998542 2111223443 456899999999999999999999 999999631
Q ss_pred ------------CEEEEEEEEEE-ecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEee
Q 000992 307 ------------NHWYLKYEIRY-LRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTP 373 (1196)
Q Consensus 307 ------------~~wylkq~l~~-~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~ 373 (1196)
..|.....+.. +......+.|+|++.. |..++.++.+. +|.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~-------------------------vw~ 280 (345)
T 3fm0_A 227 GNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA-LATACGDDAIR-------------------------VFQ 280 (345)
T ss_dssp TCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC-EEEEETTSCEE-------------------------EEE
T ss_pred CCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE-EEEEeCCCeEE-------------------------EEE
Confidence 12322222221 2222367788887764 55655555554 332
Q ss_pred ccccCCC-CCce---eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 374 LSLSLMP-PPMY---LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 374 l~~~~vp-ppm~---~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
......| .|.. .+.. .|...|++|+|+|++. .+||+++.||+|++|+..+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP-GLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp ECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST-TEEEEEETTSCEEEEEECC-
T ss_pred eCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc-eEEEEcCCCCcEEEEEecCC
Confidence 2211101 1111 1111 4788999999999972 49999999999999999764
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-30 Score=308.41 Aligned_cols=278 Identities=13% Similarity=0.107 Sum_probs=220.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
.+.|++++|+|+++.|++|+.||+|++||..+++. ..+..|.+.|.+++|+|||++||+++.|++|++|+. .++.+.
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~- 186 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR- 186 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE-
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-
Confidence 36899999999999999999999999999988754 355557899999999999999999999999999863 222221
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
.+.+|...|.+++|+|||++|+ +++ .|++|++||..+|.+..++.+|...+..++|+|
T Consensus 187 ---------------~~~~h~~~V~~v~~~p~~~~l~-s~s------~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 187 ---------------TMHGHDHNVSSVSIMPNGDHIV-SAS------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244 (410)
T ss_dssp ---------------CCCCCSSCEEEEEECSSSSEEE-EEE------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred ---------------EEcCCCCCEEEEEEeCCCCEEE-EEe------CCCeEEEEECCCCcEEEEEeCCCccEEEEEECC
Confidence 2336777899999999999999 565 479999999999999999999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccC--------------------CCeeEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCM--------------------SDLLAAVV 291 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpD--------------------g~~LAs~~ 291 (1196)
+|++||+++.|+ .|++|+.. +.... .+.. +...|.+++|+|+ |.+|++++
T Consensus 245 ~g~~l~s~s~D~------~v~vwd~~~~~~~~--~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 245 DGTLIASCSNDQ------TVRVWVVATKECKA--ELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCEEE--EECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred CCCEEEEEcCCC------eEEEEECCCCceee--EecC-CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence 999999999864 69999964 33322 2333 3567999999997 67899999
Q ss_pred ccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEE
Q 000992 292 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILV 371 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~l 371 (1196)
.|+ +|++|++.+... ...+..|......+.|+|++.. |..++.|| +|++
T Consensus 316 ~D~---~i~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~-------------------------~i~v 364 (410)
T 1vyh_C 316 RDK---TIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKF-ILSCADDK-------------------------TLRV 364 (410)
T ss_dssp TTS---EEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSC-EEEEETTT-------------------------EEEE
T ss_pred CCC---eEEEEECCCCce--EEEEECCCCcEEEEEEcCCCCE-EEEEeCCC-------------------------eEEE
Confidence 999 999999987652 3344444434478899998765 45555444 3444
Q ss_pred eeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 372 TPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 372 t~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
|+++.. .+..++ .|...|++++|+|++ +.||+++.||+|++|+.
T Consensus 365 wd~~~~-----~~~~~~~~h~~~v~~l~~~~~~--~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 365 WDYKNK-----RCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECCTTS-----CCCEEEECCSSCEEEEEECSSS--SCEEEEETTSEEEEEC-
T ss_pred EECCCC-----ceEEEEcCCCCcEEEEEEcCCC--CEEEEEeCCCcEEEEeC
Confidence 444321 122334 488899999999999 89999999999999985
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.9e-30 Score=298.97 Aligned_cols=281 Identities=11% Similarity=0.021 Sum_probs=214.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
.+.|.+++|+||++.|++++.||+|++||..++. +.....|...|.+++|||||++||+++.|++|++|+..-......
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~ 134 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR 134 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcce
Confidence 3689999999999999999999999999998764 445556788999999999999999999999999987321100000
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
. ...+.+|.+.+.++.|+++|+ ++ +++ .|++|+|||..+|+...++.+|.+.+.+++|+|+
T Consensus 135 ~-----------~~~~~~h~~~v~~~~~~~~~~-l~-s~s------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~ 195 (340)
T 1got_B 135 V-----------SRELAGHTGYLSCCRFLDDNQ-IV-TSS------GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195 (340)
T ss_dssp E-----------EEEEECCSSCEEEEEEEETTE-EE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred e-----------EEEecCCCccEEEEEECCCCc-EE-EEE------CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC
Confidence 0 012336777889999999997 55 344 4789999999899999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
|++|++++.|+ .|++|+. +|..... +.. +...|.+++|+|||++||+++.|+ +|++|++.+....
T Consensus 196 ~~~l~sg~~d~------~v~~wd~~~~~~~~~--~~~-h~~~v~~v~~~p~~~~l~s~s~d~---~v~iwd~~~~~~~-- 261 (340)
T 1got_B 196 TRLFVSGACDA------SAKLWDVREGMCRQT--FTG-HESDINAICFFPNGNAFATGSDDA---TCRLFDLRADQEL-- 261 (340)
T ss_dssp SSEEEEEETTS------CEEEEETTTCSEEEE--ECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE--
T ss_pred CCEEEEEeCCC------cEEEEECCCCeeEEE--EcC-CcCCEEEEEEcCCCCEEEEEcCCC---cEEEEECCCCcEE--
Confidence 99999999864 6999995 4443332 333 356799999999999999999999 9999999875421
Q ss_pred EEEEEecC--CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-c
Q 000992 313 YEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-K 389 (1196)
Q Consensus 313 q~l~~~~~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~ 389 (1196)
..+..... ....+.|+|++.. |..++.+|.+ ++|++.... ....+ .
T Consensus 262 ~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~d~~i-------------------------~vwd~~~~~-----~~~~~~~ 310 (340)
T 1got_B 262 MTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNC-------------------------NVWDALKAD-----RAGVLAG 310 (340)
T ss_dssp EEECCTTCCSCEEEEEECTTSSE-EEEEETTSEE-------------------------EEEETTTCC-----EEEEEEC
T ss_pred EEEccCCcccceEEEEECCCCCE-EEEECCCCeE-------------------------EEEEcccCc-----EeeEeec
Confidence 11211111 2378899998865 5666555544 333322110 11223 4
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 390 ~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
|.++|.+|+|+|+| +.||+++.||+|++|+
T Consensus 311 h~~~v~~~~~s~dg--~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 311 HDNRVSCLGVTDDG--MAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEECTTS--SCEEEEETTSCEEEEC
T ss_pred CCCcEEEEEEcCCC--CEEEEEcCCccEEecC
Confidence 88999999999999 8999999999999996
No 14
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-30 Score=338.74 Aligned_cols=433 Identities=12% Similarity=0.066 Sum_probs=276.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~ 154 (1196)
+.|.+++|+||++.||+|+.||+|+||+..+.+......|...|.+++||| |++||+++.|++|++|+. ....+....
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~ 96 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF 96 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc
Confidence 589999999999999999999999999998876654334578899999999 899999999999999973 233332221
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE-----------EEeccCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ-----------ASSELKAF 223 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~-----------~~~e~~~~ 223 (1196)
|...|.+++|+|||++|| +++ .+++|++||..++++. ....+|.+
T Consensus 97 -----------------~~~~V~~v~~sp~g~~l~-sgs------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~ 152 (902)
T 2oaj_A 97 -----------------VPGKITSIDTDASLDWML-IGL------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152 (902)
T ss_dssp -----------------CSSCEEEEECCTTCSEEE-EEE------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred -----------------CCCCEEEEEECCCCCEEE-EEc------CCCcEEEEECCCCccccceeccccccccccccCCC
Confidence 235689999999999999 676 4689999999777764 12356788
Q ss_pred ceeEEEEcCC-CCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEec---------------cCCCCcEEEEEEccCCCe
Q 000992 224 MGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYERNG-LERSSFDIN---------------EQIDSTVELLKWNCMSDL 286 (1196)
Q Consensus 224 ~v~slawsPd-G~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~---------------~~~~~~V~~laWSpDg~~ 286 (1196)
.|.+++|+|+ +.+||+++.+ ..| +|+... .....|... ..+...|.+++|||||++
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~d------g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEY------VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSS------CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred CeEEEEEccCCCCEEEEEeCC------CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 9999999996 5788988875 468 999643 333323211 011356999999999999
Q ss_pred eEEEEccCCcceEEEEEecCCEEEEEEEEE---Ee------------cCC-cEEEEEcc----CCCceEEEEecC-----
Q 000992 287 LAAVVRFEEYDSVKICFFSNNHWYLKYEIR---YL------------RRD-GIRFMWHP----TKPLQLICWTLD----- 341 (1196)
Q Consensus 287 LAs~~~d~~~~~V~lW~~~n~~wylkq~l~---~~------------~~~-~~~v~Wsp----~~~~~L~~~~~~----- 341 (1196)
||+++.|+ +|++|++.+......+.+. .+ ... ...+.|+| +++..|..+..+
T Consensus 226 lasgs~Dg---~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~ 302 (902)
T 2oaj_A 226 IITIHEDN---SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDN 302 (902)
T ss_dssp EEEEETTC---CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSC
T ss_pred EEEEECCC---eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCC
Confidence 99999999 9999999876532211110 01 112 37899965 333444544332
Q ss_pred CcEEEEEEE-------------------------Ee---------ee--c----------CCCeeEEEEcCCEEEEeecc
Q 000992 342 GQITTYNFI-------------------------WT---------TA--V----------MENSTALVIDGSKILVTPLS 375 (1196)
Q Consensus 342 g~~~~~~~~-------------------------~~---------~~--~----------~d~~~v~viDg~~l~lt~l~ 375 (1196)
+.+..+++. +. +. + ++..+++...+..|++|.+.
T Consensus 303 ~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~ 382 (902)
T 2oaj_A 303 QSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP 382 (902)
T ss_dssp CCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETT
T ss_pred ceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECC
Confidence 133333211 10 00 0 11134455555678888874
Q ss_pred ccC-C-C------------CCcee----------------------eee-cCCCCEEEEEEecCCCCCEEEEEECCCcEE
Q 000992 376 LSL-M-P------------PPMYL----------------------FSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418 (1196)
Q Consensus 376 ~~~-v-p------------ppm~~----------------------~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~ 418 (1196)
... . + ++... ..+ +|...|.+|+|+|++ +.||+++.|++|+
T Consensus 383 ~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg--~~laSgs~DgtVr 460 (902)
T 2oaj_A 383 SGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG--TAFITGHSNGSVR 460 (902)
T ss_dssp TCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE--EEEEEEETTSEEE
T ss_pred CCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC--cEEEEecCCCcEE
Confidence 221 1 1 11000 001 133455667778998 8999999999999
Q ss_pred EEeCCCCCccccccCCceeeee--ecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccc----cchhhh
Q 000992 419 VVDLPAPDMLEDLEGTEFVVEA--CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLL----GFYAQE 492 (1196)
Q Consensus 419 lw~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 492 (1196)
+|++.+.. +.. ...+.... .....+...|..++|+|||++||+++.+ .++.+|.+.-...-.. ..-...
T Consensus 461 lWd~~~g~-~~~--~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D--gtV~lwd~~~~~~~~~~~~~~~~~~~ 535 (902)
T 2oaj_A 461 IYDASHGD-IQD--NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET--GDVVLFKYEVNQFYSVENRPESGDLE 535 (902)
T ss_dssp EEESSCCT-TTT--TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT--SCEEEEEEEECCC-------------
T ss_pred EEECCCcc-ccC--CceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecC--cEEEEEEecCccccCccccCCCcccc
Confidence 99998652 211 00111100 0001355689999999999999999876 6899998852100000 000000
Q ss_pred hh-----hhcccccc------cccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEecc
Q 000992 493 IE-----LACSEDHV------QGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1196)
Q Consensus 493 ~~-----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~ 553 (1196)
+. +..+.+.. .......+.+. +.....+.+.|.++++|| ++ .++....||+|..|+..
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 536 MNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP-STAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp --CCSCCGGGSSCSEEECGGGCCTTCSEEEEE-EEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETT
T ss_pred eeeeeccccCCccccccccccCCCCCCCccce-eEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECC
Confidence 00 00000000 00000001111 223345789999999998 88 99999999999999864
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-30 Score=296.50 Aligned_cols=279 Identities=12% Similarity=0.117 Sum_probs=216.6
Q ss_pred CCCEEEEEEccC----CCEEEEEECCCcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-c
Q 000992 75 GDSITAFDYLME----KEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-D 146 (1196)
Q Consensus 75 ~~~v~~v~~spd----~~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~ 146 (1196)
.+.|.+++|+|+ ++.|++|+.||+|++|+..++... ....|..+|.+++|+|++.+||+++.|++|++|+. .
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~ 111 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN 111 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 468999999985 679999999999999999876543 34557899999999999999999999999999873 2
Q ss_pred CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCcee
Q 000992 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1196)
Q Consensus 147 ~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~ 226 (1196)
...+.... .+...+.+++|+|||++|| +++ .+++|++|+..+|+.......+...+.
T Consensus 112 ~~~~~~~~----------------~~~~~~~~~~~spdg~~l~-~g~------~dg~v~i~~~~~~~~~~~~~~~~~~v~ 168 (321)
T 3ow8_A 112 GKQIKSID----------------AGPVDAWTLAFSPDSQYLA-TGT------HVGKVNIFGVESGKKEYSLDTRGKFIL 168 (321)
T ss_dssp TEEEEEEE----------------CCTTCCCCEEECTTSSEEE-EEC------TTSEEEEEETTTCSEEEEEECSSSCEE
T ss_pred CCEEEEEe----------------CCCccEEEEEECCCCCEEE-EEc------CCCcEEEEEcCCCceeEEecCCCceEE
Confidence 33322222 2334568899999999999 565 468999999999999988888888999
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
+++|+|+|++||+++.|+ .|++|+. +|.... .+.. +...|.+++|||||++||+++.|+ +|++|++.
T Consensus 169 ~~~~spdg~~lasg~~dg------~i~iwd~~~~~~~~--~~~~-h~~~v~~l~~spd~~~l~s~s~dg---~i~iwd~~ 236 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAIDG------IINIFDIATGKLLH--TLEG-HAMPIRSLTFSPDSQLLVTASDDG---YIKIYDVQ 236 (321)
T ss_dssp EEEECTTSSEEEEEETTS------CEEEEETTTTEEEE--EECC-CSSCCCEEEECTTSCEEEEECTTS---CEEEEETT
T ss_pred EEEECCCCCEEEEEcCCC------eEEEEECCCCcEEE--EEcc-cCCceeEEEEcCCCCEEEEEcCCC---eEEEEECC
Confidence 999999999999999864 6999995 444333 2333 356799999999999999999999 99999998
Q ss_pred CCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee
Q 000992 306 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1196)
Q Consensus 306 n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~ 385 (1196)
+... ...+..+......+.|+|++.. |..++.||.+ ++|+++. ..+.
T Consensus 237 ~~~~--~~~~~~h~~~v~~~~~sp~~~~-l~s~s~D~~v-------------------------~iwd~~~-----~~~~ 283 (321)
T 3ow8_A 237 HANL--AGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSV-------------------------KVWDVGT-----RTCV 283 (321)
T ss_dssp TCCE--EEEECCCSSCEEEEEECTTSSE-EEEEETTSCE-------------------------EEEETTT-----TEEE
T ss_pred Ccce--eEEEcCCCCceEEEEECCCCCE-EEEEeCCCcE-------------------------EEEeCCC-----CEEE
Confidence 7542 3444444434488999998864 5666555554 3333321 1122
Q ss_pred eee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 386 FSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 386 ~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
+++ .|.+.|++|+|+|+| +.|++++.||+|++|+.+
T Consensus 284 ~~~~~h~~~v~~v~~s~~g--~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 284 HTFFDHQDQVWGVKYNGNG--SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECCCSSCEEEEEECTTS--SEEEEEETTCCEEEEECC
T ss_pred EEEcCCCCcEEEEEECCCC--CEEEEEeCCCeEEEEeCC
Confidence 333 478899999999999 899999999999999974
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.98 E-value=9.2e-31 Score=304.50 Aligned_cols=318 Identities=14% Similarity=0.124 Sum_probs=210.2
Q ss_pred eeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC------CCcE
Q 000992 27 ALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS------SGLL 99 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~------dG~I 99 (1196)
..|.-++.+|+.+. ++....|++. ... ...| ...|.+|+|||||+.||+++. ||+|
T Consensus 10 g~d~g~~~~~~~~~g~~~~~~w~~p--~~~-----------p~~H----~~~V~~v~fSpDG~~las~s~d~~~~wd~~v 72 (357)
T 4g56_B 10 GVDLGTENLYFQSNGSSKGSAWGRP--VTA-----------PACM----EVQIGAVRYRRDGALLLAASSLSSRTWGGSI 72 (357)
T ss_dssp -------------------------------------------CC----CSEEEEEEECSSSCEEEEEECSSSSSCCEEE
T ss_pred CCCCCccceEEecCCCccccccCCC--CCC-----------cccc----cCCEEEEEECCCCCEEEEEcCCCCccccCeE
Confidence 45655666666543 5556777761 110 1122 357999999999999999998 7889
Q ss_pred EEEECCCCeE-----EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 100 LLHSVDGNAT-----EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 100 ~lw~~~~~~~-----e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.+|+..++.. .....|..+|.+++||||+++| +++.||+|++|+ .......... .....+|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd----~~~~~~~~~~-------~~~~~~h~~ 140 (357)
T 4g56_B 73 WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWE----ILEKESLLVN-------KFAKYEHDD 140 (357)
T ss_dssp EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC------------CCC-------CEEECCCSS
T ss_pred EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEee----ccccceeEEE-------eeccCCCCC
Confidence 9999866432 2233468899999999998655 578899998875 2221111100 011226778
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~ 253 (1196)
.|.+++|+|||++|| +++ .+++|+|||..+|++...+.+|.+.+.+++|+|+|. ++++++.|+ .|+
T Consensus 141 ~V~~v~~spdg~~l~-sgs------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg------~v~ 207 (357)
T 4g56_B 141 IVKTLSVFSDGTQAV-SGG------KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG------RIL 207 (357)
T ss_dssp CEEEEEECSSSSEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTS------CEE
T ss_pred CEEEEEECCCCCEEE-EEe------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCC------ceE
Confidence 899999999999999 565 468999999999999999999999999999999986 788888764 699
Q ss_pred EEeCC-CeeEEEEEeccCCCCcEEEEEEccCC-CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCC
Q 000992 254 FYERN-GLERSSFDINEQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTK 331 (1196)
Q Consensus 254 ~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg-~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~ 331 (1196)
+|+.. |.....+.+ ..+...|.+++|+|++ .+||+++.|+ +|++|++.+..- .+.+..+......+.|+|++
T Consensus 208 ~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~~la~g~~d~---~i~~wd~~~~~~--~~~~~~~~~~v~~l~~sp~~ 281 (357)
T 4g56_B 208 LWDTRKPKPATRIDF-CASDTIPTSVTWHPEKDDTFACGDETG---NVSLVNIKNPDS--AQTSAVHSQNITGLAYSYHS 281 (357)
T ss_dssp ECCTTSSSCBCBCCC-TTCCSCEEEEEECTTSTTEEEEEESSS---CEEEEESSCGGG--CEEECCCSSCEEEEEECSSS
T ss_pred EEECCCCceeeeeee-ccccccccchhhhhcccceEEEeeccc---ceeEEECCCCcE--eEEEeccceeEEEEEEcCCC
Confidence 99853 332221111 1234579999999985 6899999998 899999987542 23444444444889999988
Q ss_pred CceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEec-CCCCCEEEE
Q 000992 332 PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYS-KSSKNCLAA 410 (1196)
Q Consensus 332 ~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafsp-dg~~~~lAs 410 (1196)
...|+.++.||.+. +|+++.. ...+.+.|.+.|++|+||| |+ ++||+
T Consensus 282 ~~~lasgs~D~~i~-------------------------iwd~~~~-----~~~~~~~H~~~V~~vafsP~d~--~~l~s 329 (357)
T 4g56_B 282 SPFLASISEDCTVA-------------------------VLDADFS-----EVFRDLSHRDFVTGVAWSPLDH--SKFTT 329 (357)
T ss_dssp SCCEEEEETTSCEE-------------------------EECTTSC-----EEEEECCCSSCEEEEEECSSST--TEEEE
T ss_pred CCEEEEEeCCCEEE-------------------------EEECCCC-----cEeEECCCCCCEEEEEEeCCCC--CEEEE
Confidence 66566666566543 3332211 1223456899999999999 67 89999
Q ss_pred EECCCcEEEEeCCC
Q 000992 411 ILSDGCLCVVDLPA 424 (1196)
Q Consensus 411 ~~~dg~v~lw~~~~ 424 (1196)
++.||+|++|++..
T Consensus 330 ~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 330 VGWDHKVLHHHLPS 343 (357)
T ss_dssp EETTSCEEEEECC-
T ss_pred EcCCCeEEEEECCC
Confidence 99999999999874
No 17
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.98 E-value=2.5e-30 Score=299.86 Aligned_cols=286 Identities=13% Similarity=0.051 Sum_probs=209.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCC------------CeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEE
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDG------------NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVM 143 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~------------~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~ 143 (1196)
..|.+++|+|||+.|++++ |+++++||... +.....-.++.+|.+++||||+ .|++++.||+|++|
T Consensus 31 ~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lW 108 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELW 108 (344)
T ss_dssp SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEE
Confidence 5699999999999999887 77888886321 1121222357889999999995 67899999999998
Q ss_pred ecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 144 THD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 144 ~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
+.. .+.+..... ...+|.+.|.+++|+|||++|| +++ .|++|||||..+|+++.++.+|.
T Consensus 109 d~~~~~~~~~~~~------------~~~~H~~~V~~v~~spdg~~l~-sgs------~d~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 109 ELDENETLIVSKF------------CKYEHDDIVSTVSVLSSGTQAV-SGS------KDICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp EECTTSSCEEEEE------------EEECCSSCEEEEEECTTSSEEE-EEE------TTSCEEEEETTTTEEEEEECCCS
T ss_pred eccCCCceeEeec------------cccCCCCCEEEEEECCCCCEEE-EEe------CCCeEEEEECCCCcEEEEEcCcC
Confidence 632 222211111 1226778899999999999999 565 46899999999999999999999
Q ss_pred CceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccC-CCeeEEEEccCCcceE
Q 000992 223 FMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCM-SDLLAAVVRFEEYDSV 299 (1196)
Q Consensus 223 ~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpD-g~~LAs~~~d~~~~~V 299 (1196)
+.|.+++|+|+|. ++|+++.|+ .|++|+. +|.....+... .+...+.+++|+|+ +++||+++.|+ +|
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~sg~~dg---~v 239 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDN------RILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSEVFVFGDENG---TV 239 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTS------CEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTS---EE
T ss_pred CceEEEEecCCCCCceeeecccc------ccccccccccceeeeeecc-eeeccceeeeecCCCCcceEEeccCC---cE
Confidence 9999999999995 789999864 6999995 44433332212 12346899999995 56899999999 99
Q ss_pred EEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC
Q 000992 300 KICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 379 (1196)
Q Consensus 300 ~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v 379 (1196)
+|||+.+... .+++..|......+.|+|++...|+.++.||.+. +|+++..
T Consensus 240 ~~wd~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~-------------------------vwd~~~~-- 290 (344)
T 4gqb_B 240 SLVDTKSTSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLA-------------------------VLDSSLS-- 290 (344)
T ss_dssp EEEESCC--C--CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEE-------------------------EECTTCC--
T ss_pred EEEECCCCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEE-------------------------EEECCCC--
Confidence 9999987542 3455555444588999999866566666666553 2322211
Q ss_pred CCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 380 PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 380 pppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
.......|.+.|++|+|||++. .+||+++.||+|++|++++.
T Consensus 291 ---~~~~~~~H~~~V~~v~~sp~~~-~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 291 ---ELFRSQAHRDFVRDATWSPLNH-SLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ---EEEEECCCSSCEEEEEECSSST-TEEEEEETTSCEEEEECCC-
T ss_pred ---cEEEEcCCCCCEEEEEEeCCCC-eEEEEEcCCCeEEEEECCCC
Confidence 1112235889999999999983 57889999999999999763
No 18
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=4.4e-29 Score=288.42 Aligned_cols=312 Identities=16% Similarity=0.198 Sum_probs=223.1
Q ss_pred eecC-cEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEee
Q 000992 114 RVEG-GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLS 192 (1196)
Q Consensus 114 ~~~~-~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvs 192 (1196)
.|.+ .|++++|||||++||+++.|++|++|+........... ...+|...|.+++|+|||++|| ++
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~------------~~~~h~~~v~~~~~sp~g~~l~-s~ 79 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV------------LSEGHQRTVRKVAWSPCGNYLA-SA 79 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEE------------ECSSCSSCEEEEEECTTSSEEE-EE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeee------------eccccCCcEEEEEECCCCCEEE-EE
Confidence 3455 89999999999999999999999999643221110000 0125677899999999999999 56
Q ss_pred ccccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEE-EEec
Q 000992 193 EFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSS-FDIN 268 (1196)
Q Consensus 193 s~d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~-f~l~ 268 (1196)
+ .|++++||+..++ ++..++++|.+.+.+++|+|+|++||+++.|+ .|++|+..... ... ..+.
T Consensus 80 s------~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~ 147 (345)
T 3fm0_A 80 S------FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLN 147 (345)
T ss_dssp E------TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEEC
T ss_pred E------CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEec
Confidence 5 4689999998666 45677889999999999999999999999874 59999964321 111 1232
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEE
Q 000992 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
.+...|..++|+|||++||+++.|+ +|++|+..+..|.....+..+......+.|+|++.. |+.++.||.+.+++
T Consensus 148 -~h~~~v~~~~~~p~~~~l~s~s~d~---~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~-l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 148 -SHTQDVKHVVWHPSQELLASASYDD---TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIWR 222 (345)
T ss_dssp -CCCSCEEEEEECSSSSCEEEEETTS---CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEE
T ss_pred -CcCCCeEEEEECCCCCEEEEEeCCC---cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCE-EEEEeCCCeEEEec
Confidence 3456799999999999999999999 999999998877655666555444588999999865 78888888886543
Q ss_pred EEEeee-cCC-CeeEEEEcCCEEEEeeccccCCCCCceeeee--cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 349 FIWTTA-VME-NSTALVIDGSKILVTPLSLSLMPPPMYLFSL--KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 349 ~~~~~~-~~d-~~~v~viDg~~l~lt~l~~~~vpppm~~~~l--~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.. +.. ......... +...+..++ .|...|++|+|+|++ ..||+++.|++|++|+...
T Consensus 223 ----~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~h~~~v~~v~~~~~~--~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 223 ----QYLPGNEQGVACSGSD-------------PSWKCICTLSGFHSRTIYDIAWCQLT--GALATACGDDAIRVFQEDP 283 (345)
T ss_dssp ----EECTTCTTCCCCC----------------CEEEEEEEECSSCSSCEEEEEECTTT--CCEEEEETTSCEEEEEECT
T ss_pred ----cccCCCCccceeeccC-------------CccceeEEecCCCCCcEEEEEEecCC--CEEEEEeCCCeEEEEEeCC
Confidence 32 111 000000000 001122223 267889999999999 8999999999999999875
Q ss_pred CCccccccCCceeeeeecccccCCcEEEEEEecCC-eEEEEEecCCCCceEEEEee
Q 000992 425 PDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH-LLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 425 ~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~-~lla~~~~~~~~~~~~~~~~ 479 (1196)
..... ...+.........|.+.|..++|+|++ .+||+++.+ .++.+|.+.
T Consensus 284 ~~~~~---~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D--g~v~~W~~~ 334 (345)
T 3fm0_A 284 NSDPQ---QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD--GEVAFWKYQ 334 (345)
T ss_dssp TSCTT---SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT--SCEEEEEEC
T ss_pred CCCcc---eeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC--CcEEEEEec
Confidence 32210 011111111123466789999999997 489998876 689999873
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=1.1e-29 Score=294.88 Aligned_cols=284 Identities=13% Similarity=0.082 Sum_probs=216.1
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
.+.|.+++|+||++.|++|+.||+|++||..++.. ..+..+...|.+++|||||..||+++.|+++.+|...++.....
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~ 143 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM 143 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc
Confidence 36899999999999999999999999999887654 35555678899999999999999999999999997543311100
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC-
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP- 232 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP- 232 (1196)
. . . ...+.+|.+.+..++|+|||.+|+ +++ .|++|+|||.++|++..++.+|...+.+++|+|
T Consensus 144 ~-~------~--~~~~~~h~~~v~~~~~~~~~~~l~-t~s------~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 144 A-A------K--KKSVAMHTNYLSACSFTNSDMQIL-TAS------GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp G-G------G--CEEEEECSSCEEEEEECSSSSEEE-EEE------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred c-c------c--ceeeeccCCcEEEEEEeCCCCEEE-EEe------CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence 0 0 0 012335778899999999999999 565 479999999999999999999999999999988
Q ss_pred -CCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 233 -SGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 233 -dG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
+|++|++++.|+ .|++|+. +|..... +.. +...|.+++|+|+|..||+++.|+ +|++|++.+....
T Consensus 208 ~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~--~~~-h~~~v~~v~~~p~~~~l~s~s~D~---~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 208 ETGNTFVSGGCDK------KAMVWDMRSGQCVQA--FET-HESDVNSVRYYPSGDAFASGSDDA---TCRLYDLRADREV 275 (354)
T ss_dssp SSCCEEEEEETTS------CEEEEETTTCCEEEE--ECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE
T ss_pred CCCCEEEEEeCCC------eEEEEECCCCcEEEE--ecC-CCCCeEEEEEeCCCCEEEEEeCCC---eEEEEECCCCcEE
Confidence 589999999874 6999995 4443332 332 456899999999999999999999 9999999875421
Q ss_pred EEEEEEEecC--CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee
Q 000992 311 LKYEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1196)
Q Consensus 311 lkq~l~~~~~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l 388 (1196)
..+..+.. ....+.|+|++.. |.++..+|.+. +|++.... ....+
T Consensus 276 --~~~~~~~~~~~~~~~~~s~~g~~-l~~g~~d~~i~-------------------------vwd~~~~~-----~~~~l 322 (354)
T 2pbi_B 276 --AIYSKESIIFGASSVDFSLSGRL-LFAGYNDYTIN-------------------------VWDVLKGS-----RVSIL 322 (354)
T ss_dssp --EEECCTTCCSCEEEEEECTTSSE-EEEEETTSCEE-------------------------EEETTTCS-----EEEEE
T ss_pred --EEEcCCCcccceeEEEEeCCCCE-EEEEECCCcEE-------------------------EEECCCCc-----eEEEE
Confidence 11111111 1267889998764 56665555553 33322110 11222
Q ss_pred -cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 389 -KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 389 -~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
.|.+.|.+++||||| +.||+++.||+|++|+
T Consensus 323 ~~h~~~v~~l~~spdg--~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 323 FGHENRVSTLRVSPDG--TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCCSSCEEEEEECTTS--SCEEEEETTSEEEEEC
T ss_pred ECCCCcEEEEEECCCC--CEEEEEcCCCCEEecC
Confidence 488999999999999 8999999999999995
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=2.4e-29 Score=285.16 Aligned_cols=280 Identities=10% Similarity=0.087 Sum_probs=218.8
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
.+.|.+++|+||++.|++++.||+|++||..++.. ..+..|...|.+++|+|||++||+++.|++|++|+. ....+..
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 92 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence 36899999999999999999999999999998754 455567889999999999999999999999999873 2332222
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slaws 231 (1196)
|.+|.+.|.+++|+|||++|| +++ .|++|+|||..++ .+..++++|.+.+.+++|+
T Consensus 93 ----------------~~~h~~~v~~~~~~~~~~~l~-sgs------~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~ 149 (304)
T 2ynn_A 93 ----------------FEAHPDYIRSIAVHPTKPYVL-SGS------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149 (304)
T ss_dssp ----------------EECCSSCEEEEEECSSSSEEE-EEE------TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEEC
T ss_pred ----------------EeCCCCcEEEEEEcCCCCEEE-EEC------CCCeEEEEECCCCcchhhhhcccCCcEEEEEEC
Confidence 235677899999999999999 565 4799999998666 5667788999999999999
Q ss_pred C-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc--CCCeeEEEEccCCcceEEEEEecCCE
Q 000992 232 P-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC--MSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 232 P-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp--Dg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
| ++++||+++.| ..|++|+..... ..+.+..++...|..++|+| |+++||+++.|+ +|++|++.+..
T Consensus 150 p~~~~~l~sgs~D------~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~---~i~iWd~~~~~ 219 (304)
T 2ynn_A 150 PKDPSTFASGCLD------RTVKVWSLGQST-PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL---TIKIWDYQTKS 219 (304)
T ss_dssp TTCTTEEEEEETT------SEEEEEETTCSS-CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS---EEEEEETTTTE
T ss_pred CCCCCEEEEEeCC------CeEEEEECCCCC-ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC---eEEEEeCCCCc
Confidence 9 68999999986 479999964221 11233333445799999987 788999999999 99999986532
Q ss_pred EEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee
Q 000992 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l 388 (1196)
. +....
T Consensus 220 ~-------------------------~~~~~------------------------------------------------- 225 (304)
T 2ynn_A 220 C-------------------------VATLE------------------------------------------------- 225 (304)
T ss_dssp E-------------------------EEEEE-------------------------------------------------
T ss_pred c-------------------------ceeeC-------------------------------------------------
Confidence 0 00000
Q ss_pred cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCe--EEEEEe
Q 000992 389 KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHL--LLSVSH 466 (1196)
Q Consensus 389 ~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~--lla~~~ 466 (1196)
.|...|.+++|+|++ +.||+++.||+|++|+..+......+.+ +...++.++|+|++. ++|+++
T Consensus 226 ~h~~~v~~~~~~p~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 226 GHMSNVSFAVFHPTL--PIIISGSEDGTLKIWNSSTYKVEKTLNV------------GLERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp CCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEEEECC------------SSSSEEEEEECTTCGGGCEEEEE
T ss_pred CCCCCEEEEEECCCC--CEEEEEcCCCeEEEEECCCCceeeeccC------------CCccEEEEEECCCCCceEEEEec
Confidence 145678899999999 8999999999999999986544433322 345789999999874 578777
Q ss_pred cCCCCceEEEEe
Q 000992 467 HGPRHSNYFRGA 478 (1196)
Q Consensus 467 ~~~~~~~~~~~~ 478 (1196)
+ +...++.+
T Consensus 292 ~---~g~~~~~~ 300 (304)
T 2ynn_A 292 D---NGFTVLSL 300 (304)
T ss_dssp T---TEEEEEEC
T ss_pred C---CceEEEEe
Confidence 6 45666665
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.4e-29 Score=286.62 Aligned_cols=293 Identities=16% Similarity=0.177 Sum_probs=203.4
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe---EEEe--eeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---TEVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~---~e~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
.+.|.+++|+|+ .||+++.||+|++|+..++. .... +.|.+.|.+++|||||++||+++.|++|++|+..-..
T Consensus 14 ~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~ 91 (330)
T 2hes_X 14 KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESA 91 (330)
T ss_dssp SSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC----
T ss_pred CCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCc
Confidence 468999999998 99999999999999998742 2333 3478899999999999999999999999999642110
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CC---cEEEEeccCCCce
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SG---TLQASSELKAFMG 225 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G---~l~~~~e~~~~~v 225 (1196)
...... .. ...+.+|.+.|.+++|+|||++|| +++ .|++|+|||.. .+ ++..++.+|.+.+
T Consensus 92 ~~~~~~------~~--~~~~~~h~~~V~~v~~sp~g~~la-s~s------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 92 DRTFEM------DL--LAIIEGHENEVKGVAWSNDGYYLA-TCS------RDKSVWIWETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp ---CCC------EE--EEEEC----CEEEEEECTTSCEEE-EEE------TTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred Cccccc------ee--EEEEcCCCCcEEEEEECCCCCEEE-EEe------CCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence 000000 00 012346778899999999999999 565 46999999983 22 5677888899999
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccC--CCeeEEEEccCCcceEEEE
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCM--SDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpD--g~~LAs~~~d~~~~~V~lW 302 (1196)
.+++|+|+|++||+++.|. .|++|+.. +.......+.. +...|.+++|+|+ +..||+++.|+ +|++|
T Consensus 157 ~~v~~~p~~~~l~s~s~D~------~i~iW~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~D~---~v~iw 226 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDD------TVRIWKDYDDDWECVAVLNG-HEGTVWSSDFDKTEGVFRLCSGSDDS---TVRVW 226 (330)
T ss_dssp EEEEECSSSSEEEEEETTS------CEEEEEEETTEEEEEEEECC-CSSCEEEEEECCSSSSCEEEEEETTS---CEEEE
T ss_pred EEEEECCCCCEEEEEcCCC------eEEEEECCCCCeeEEEEccC-CCCcEEEEEecCCCCeeEEEEEeCCC---eEEEE
Confidence 9999999999999999874 69999853 21111123333 4578999999999 77999999999 99999
Q ss_pred EecCC------EEEEEEEEEE-ecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeecc
Q 000992 303 FFSNN------HWYLKYEIRY-LRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLS 375 (1196)
Q Consensus 303 ~~~n~------~wylkq~l~~-~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~ 375 (1196)
++.+. .|.....+.. +......+.|+|++ .|..+..+|.+.++ +.. +|..-.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw----~~~----------~~~~~~----- 285 (330)
T 2hes_X 227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVY----EEV----------DGEWKV----- 285 (330)
T ss_dssp EEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEE----EEE----------TTEEEE-----
T ss_pred EecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEE----EcC----------CCceEE-----
Confidence 98642 2322222222 22233788898654 36777777776543 221 111000
Q ss_pred ccCCCCCceeeeecCCC-CEEEEEEec--CCCCCEEEEEECCCcEEEEeCCC
Q 000992 376 LSLMPPPMYLFSLKFPT-AVTEMAFYS--KSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 376 ~~~vpppm~~~~l~~~~-~V~~Vafsp--dg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.......|.. .|++|+|+| ++ ++||+++.||+|+||++..
T Consensus 286 -------~~~~~~~h~~~~v~~v~~~~~~~~--~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 286 -------FAKRALCHGVYEINVVKWLELNGK--TILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -------EEEESCTTTTSCEEEEEEC-------CCEEEEETTSEEEEEEC--
T ss_pred -------EeccccccccceEEEEEEecCCCc--eEEEEecCCCcEEEEEecc
Confidence 0001123665 899999999 56 8999999999999999863
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=4.3e-29 Score=287.85 Aligned_cols=294 Identities=14% Similarity=0.089 Sum_probs=211.5
Q ss_pred cccccCCCCCCEEEEEE-----cc-CCCEEEEEECCCcEEEEECCCC-------e-EEEeeeecCcEEEEEECCCCCEEE
Q 000992 67 IEHIDLEPGDSITAFDY-----LM-EKEALIVGTSSGLLLLHSVDGN-------A-TEVVGRVEGGVRFISPSPDGDLLG 132 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~-----sp-d~~~La~as~dG~I~lw~~~~~-------~-~e~vg~~~~~I~~~awSPDg~~LA 132 (1196)
+.+| .+.|.+++| +| |++.|++|+.||+|++||..++ . ...+..|...|.+++|||||.+||
T Consensus 17 l~gH----~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 17 LEGH----SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EECC----SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eccc----hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 4555 468999999 77 9999999999999999998642 1 234455789999999999999999
Q ss_pred EEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC
Q 000992 133 VTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1196)
Q Consensus 133 ~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~ 211 (1196)
+++.|++|++|+. ....+. .|.+|...|.+++|+|||++|+ +++ .|++|+|||. .
T Consensus 93 s~s~D~~v~lwd~~~~~~~~----------------~~~~h~~~v~~v~~sp~~~~l~-s~~------~d~~i~~wd~-~ 148 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYK----------------RFVGHQSEVYSVAFSPDNRQIL-SAG------AEREIKLWNI-L 148 (343)
T ss_dssp EEETTSEEEEEETTSSCEEE----------------EEECCCSCEEEEEECSSTTEEE-EEE------TTSCEEEEES-S
T ss_pred EEcCCCcEEEEECCCCcEEE----------------EEcCCCCcEEEEEECCCCCEEE-EEc------CCCEEEEEec-c
Confidence 9999999999863 232222 1235677899999999999999 565 4699999999 5
Q ss_pred CcEEEEec---cCCCceeEEEEcCCC----------CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEE
Q 000992 212 GTLQASSE---LKAFMGAVLEWMPSG----------ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELL 278 (1196)
Q Consensus 212 G~l~~~~e---~~~~~v~slawsPdG----------~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~l 278 (1196)
+....... +|...+.+++|+|++ .+||+++.| ..|++|+.++..... +.. +...|.++
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~--~~~-h~~~v~~~ 219 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD------GRLKVWNTNFQIRYT--FKA-HESNVNHL 219 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT------SEEEEEETTTEEEEE--EEC-CSSCEEEE
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC------CEEEEEcCCCceeEE--EcC-ccccceEE
Confidence 66555543 677889999999998 789999986 479999987654433 333 35689999
Q ss_pred EEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCC
Q 000992 279 KWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358 (1196)
Q Consensus 279 aWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~ 358 (1196)
+|||||++||+++.|+ +|++|++.+... ....+. +......+.|+|++.. +..+ .++.+. .|++..
T Consensus 220 ~~s~~g~~l~sgs~dg---~v~iwd~~~~~~-~~~~~~-~~~~v~~v~~sp~~~~-la~~-~d~~v~----iw~~~~--- 285 (343)
T 2xzm_R 220 SISPNGKYIATGGKDK---KLLIWDILNLTY-PQREFD-AGSTINQIAFNPKLQW-VAVG-TDQGVK----IFNLMT--- 285 (343)
T ss_dssp EECTTSSEEEEEETTC---EEEEEESSCCSS-CSEEEE-CSSCEEEEEECSSSCE-EEEE-ESSCEE----EEESSS---
T ss_pred EECCCCCEEEEEcCCC---eEEEEECCCCcc-cceeec-CCCcEEEEEECCCCCE-EEEE-CCCCEE----EEEeCC---
Confidence 9999999999999999 999999843221 111111 1122378999998753 4433 344443 333320
Q ss_pred eeEEEEcCCEEEEeeccccCCCCCce-ee-eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 359 STALVIDGSKILVTPLSLSLMPPPMY-LF-SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 359 ~~v~viDg~~l~lt~l~~~~vpppm~-~~-~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
+..+.+..+. +.|.. .. ...|...|.+|+|+|+| +.||+++.||+|++|+..+
T Consensus 286 -------~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~sp~g--~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 286 -------QSKAPVCTIE----AEPITKAEGQKGKNPQCTSLAWNALG--KKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp -------CCSCSEEECC----CCSGGGBTTBCCSCCCEEEEEECSSS--CCEEEEETTSEEEEEEEEE
T ss_pred -------CCCCceEEee----cCcchhhhhhcCCCCceEEEEECCCC--CeEEEecCCceEEEEEEEc
Confidence 0000000010 01110 00 11467789999999999 8999999999999999764
No 23
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=5.9e-29 Score=284.14 Aligned_cols=291 Identities=13% Similarity=0.115 Sum_probs=217.0
Q ss_pred cccccCCCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCC------eEEEeeeecCcEEEEEECCCCCEEEEEeCCce
Q 000992 67 IEHIDLEPGDSITAFDYLMEK-EALIVGTSSGLLLLHSVDGN------ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ 139 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~-~~La~as~dG~I~lw~~~~~------~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~t 139 (1196)
|.+| .+.|.+++|+|++ +.|++++.||+|++|+..+. .+.....|...|.+++|||||++||+++.|++
T Consensus 13 l~gH----~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 13 LEGH----NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp ECCC----SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred Eccc----cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 5555 4689999999975 89999999999999998641 13344557899999999999999999999999
Q ss_pred EEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe
Q 000992 140 ILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 140 V~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~ 218 (1196)
|++|+. ..+.+. .|.+|...|.+++|+|+|.+|+ +++ .|++|+|||. .|+...++
T Consensus 89 v~~wd~~~~~~~~----------------~~~~h~~~v~~~~~~~~~~~l~-s~s------~D~~i~vwd~-~~~~~~~~ 144 (319)
T 3frx_A 89 LRLWDVATGETYQ----------------RFVGHKSDVMSVDIDKKASMII-SGS------RDKTIKVWTI-KGQCLATL 144 (319)
T ss_dssp EEEEETTTTEEEE----------------EEECCSSCEEEEEECTTSCEEE-EEE------TTSCEEEEET-TSCEEEEE
T ss_pred EEEEECCCCCeeE----------------EEccCCCcEEEEEEcCCCCEEE-EEe------CCCeEEEEEC-CCCeEEEE
Confidence 999873 232222 2336677899999999999999 565 4799999999 78888899
Q ss_pred ccCCCceeEEEEcCC------CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000992 219 ELKAFMGAVLEWMPS------GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 219 e~~~~~v~slawsPd------G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
.+|.+.+.+++|+|. +.+|++++.|. .|++|+.+.... ...+.. +...|.+++|||||++||+++.
T Consensus 145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~~~~-~~~~~~-h~~~v~~~~~sp~g~~l~s~~~ 216 (319)
T 3frx_A 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDK------MVKAWNLNQFQI-EADFIG-HNSNINTLTASPDGTLIASAGK 216 (319)
T ss_dssp CCCSSCEEEEEECCC------CCEEEEEETTS------CEEEEETTTTEE-EEEECC-CCSCEEEEEECTTSSEEEEEET
T ss_pred eccCCcEEEEEEccCCCCCCCccEEEEEeCCC------EEEEEECCcchh-heeecC-CCCcEEEEEEcCCCCEEEEEeC
Confidence 999999999999995 55899999864 699999754322 112333 4568999999999999999999
Q ss_pred cCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEe
Q 000992 293 FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVT 372 (1196)
Q Consensus 293 d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt 372 (1196)
|+ +|+||++.+..- ...+.. ......+.|+|++.. |...+.+ .+. +|+.. ... .+.
T Consensus 217 dg---~i~iwd~~~~~~--~~~~~~-~~~v~~~~~sp~~~~-la~~~~~-~i~----v~~~~-----------~~~-~~~ 272 (319)
T 3frx_A 217 DG---EIMLWNLAAKKA--MYTLSA-QDEVFSLAFSPNRYW-LAAATAT-GIK----VFSLD-----------PQY-LVD 272 (319)
T ss_dssp TC---EEEEEETTTTEE--EEEEEC-CSCEEEEEECSSSSE-EEEEETT-EEE----EEEET-----------TEE-EEE
T ss_pred CC---eEEEEECCCCcE--EEEecC-CCcEEEEEEcCCCCE-EEEEcCC-CcE----EEEeC-----------cCe-eee
Confidence 99 999999987652 223332 223488999999865 5555533 332 23321 111 111
Q ss_pred eccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 373 PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 373 ~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.++ +........+...|.+++||||| +.|++++.||+|++|++.+
T Consensus 273 ~~~-----~~~~~~~~~~~~~v~~~~~spdg--~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 273 DLR-----PEFAGYSKAAEPHAVSLAWSADG--QTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEC-----CCCTTCCGGGCCCEEEEEECTTS--SEEEEEETTSCEEEEEEEE
T ss_pred ccC-----ccccccccCcCcceeEEEECCCC--CEEEEeecCceEEEEEEee
Confidence 121 11111122356789999999999 9999999999999999864
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=5.7e-29 Score=285.08 Aligned_cols=277 Identities=13% Similarity=0.093 Sum_probs=216.1
Q ss_pred ceeEEeeecC----CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC
Q 000992 22 ILQFSALDIE----QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~----~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG 97 (1196)
.+.+++|.++ ++.|++++.|+.|..|+. ..+...... .+.+| ...|.+++|+|++..+++++.||
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~--~~~~~~~~~-----~l~gh----~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKW--RDERLDLQW-----SLEGH----QLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp CEEEEEEC-------CEEEEEETTSCEEEEEE--ETTEEEEEE-----EECCC----SSCEEEEEECSSSSEEEEEETTS
T ss_pred cEEEEEEecCCCCCCCEEEEEcCCCCEEEEEC--CCCCeeeee-----eeccC----CCCEEEEEECCCCCEEEEEeCCC
Confidence 7899999764 678999999999999998 333321111 14444 35799999999999999999999
Q ss_pred cEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCC
Q 000992 98 LLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 98 ~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
+|++||..+++. ..+..+...|.+++|||||++||+++.|++|.+|+.. ....... ..+...
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~----------------~~~~~~ 166 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL----------------DTRGKF 166 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE----------------ECSSSC
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe----------------cCCCce
Confidence 999999988754 4555567789999999999999999999999998732 2221111 133456
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
+.+++|+|||++|| +++ .|++|+|||..+|++..++++|.+.+.+++|+|+|++||+++.|. .|++|
T Consensus 167 v~~~~~spdg~~la-sg~------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg------~i~iw 233 (321)
T 3ow8_A 167 ILSIAYSPDGKYLA-SGA------IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG------YIKIY 233 (321)
T ss_dssp EEEEEECTTSSEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTS------CEEEE
T ss_pred EEEEEECCCCCEEE-EEc------CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC------eEEEE
Confidence 79999999999999 565 468999999989999999999999999999999999999999864 69999
Q ss_pred eCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 256 ERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 256 e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
+.. +.... .+.. +...|.+++|+|||++||+++.|+ +|++|++.+... .+++..+......+.|+|++..
T Consensus 234 d~~~~~~~~--~~~~-h~~~v~~~~~sp~~~~l~s~s~D~---~v~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~g~~- 304 (321)
T 3ow8_A 234 DVQHANLAG--TLSG-HASWVLNVAFCPDDTHFVSSSSDK---SVKVWDVGTRTC--VHTFFDHQDQVWGVKYNGNGSK- 304 (321)
T ss_dssp ETTTCCEEE--EECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSE-
T ss_pred ECCCcceeE--EEcC-CCCceEEEEECCCCCEEEEEeCCC---cEEEEeCCCCEE--EEEEcCCCCcEEEEEECCCCCE-
Confidence 964 33333 3333 356799999999999999999999 999999988652 3444444334488999998865
Q ss_pred EEEEecCCcEEEE
Q 000992 335 LICWTLDGQITTY 347 (1196)
Q Consensus 335 L~~~~~~g~~~~~ 347 (1196)
|..+..||.+.++
T Consensus 305 l~s~~~d~~i~vw 317 (321)
T 3ow8_A 305 IVSVGDDQEIHIY 317 (321)
T ss_dssp EEEEETTCCEEEE
T ss_pred EEEEeCCCeEEEE
Confidence 6777777777543
No 25
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=3.9e-30 Score=301.28 Aligned_cols=293 Identities=10% Similarity=0.053 Sum_probs=217.7
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
.+.|.+++|+|+++.|++|+.||+|++||..+++. ..+..|...|.+++|||||++||+++.|++|++|+..-......
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~ 145 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG 145 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC
Confidence 46899999999999999999999999999988754 35556788999999999999999999999999986321100000
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCCcEEEEe-----ccCCCceeE
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQASS-----ELKAFMGAV 227 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-----e~~~~~v~s 227 (1196)
. ..+ ...+.+|.+.+.++.|+|++. .|+ +++ .|++|++||..+|+...++ .+|...+.+
T Consensus 146 ~-------~~~-~~~~~gh~~~v~~~~~~~~~~~~l~-s~s------~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 146 N-------MPV-SRVLTGHKGYASSCQYVPDQETRLI-TGS------GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp S-------STT-CCBCCCCSSCCCCCBCCSSSSSCEE-EEC------TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred C-------ccc-eeeccCCCcceEEEEEecCCCCEEE-EEC------CCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 0 000 112447788889999999854 577 455 4799999999999988876 567888999
Q ss_pred EEEcC-CCCeEEEEecCCCCCCCCeEEEEeCC-C-eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 228 LEWMP-SGANIAAVYDRKSENKCPSIVFYERN-G-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 228 lawsP-dG~~IAs~s~d~~~~~~~~V~~~e~n-G-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
++|+| +|++|++++.|+ .|++|+.. + .... .+.. +...|.+|+|+|||+.||+++.|+ +|++|++
T Consensus 211 ~~~~~~~~~~l~sgs~D~------~v~~wd~~~~~~~~~--~~~~-h~~~v~~v~~~p~~~~l~s~s~D~---~i~lwd~ 278 (380)
T 3iz6_a 211 LSINSLNANMFISGSCDT------TVRLWDLRITSRAVR--TYHG-HEGDINSVKFFPDGQRFGTGSDDG---TCRLFDM 278 (380)
T ss_dssp EEECSSSCCEEEEEETTS------CEEEEETTTTCCCCE--EECC-CSSCCCEEEECTTSSEEEEECSSS---CEEEEET
T ss_pred EEeecCCCCEEEEEECCC------eEEEEECCCCCcceE--EECC-cCCCeEEEEEecCCCeEEEEcCCC---eEEEEEC
Confidence 99987 899999999874 69999953 2 2222 2333 456899999999999999999999 9999999
Q ss_pred cCCEEEEEEEEEEecC-------CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeecccc
Q 000992 305 SNNHWYLKYEIRYLRR-------DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS 377 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~~-------~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~ 377 (1196)
.+.+. .+.+..+.. ....+.|+|++.. |..++.+|.+. .|++. .+..+. .+.
T Consensus 279 ~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~----vwd~~----------~~~~~~--~~~-- 337 (380)
T 3iz6_a 279 RTGHQ--LQVYNREPDRNDNELPIVTSVAFSISGRL-LFAGYSNGDCY----VWDTL----------LAEMVL--NLG-- 337 (380)
T ss_dssp TTTEE--EEEECCCCSSSCCSSCSCSEEEECSSSSE-EEEECTTSCEE----EEETT----------TCCEEE--EEC--
T ss_pred CCCcE--EEEecccccccccccCceEEEEECCCCCE-EEEEECCCCEE----EEECC----------CCceEE--EEe--
Confidence 88753 222222111 1267899998865 66666666654 33321 111111 000
Q ss_pred CCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 378 LMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 378 ~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
...-.|.+.|.+++||||| +.||+++.||+|++|++.+
T Consensus 338 -------~~~~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 338 -------TLQNSHEGRISCLGLSSDG--SALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp -------CSCSSCCCCCCEEEECSSS--SEEEEECTTSCEEEEECCS
T ss_pred -------cccCCCCCceEEEEECCCC--CEEEEeeCCCCEEEEecCC
Confidence 0011478899999999999 8999999999999999875
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=2.9e-28 Score=275.86 Aligned_cols=281 Identities=11% Similarity=0.106 Sum_probs=213.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-Cceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~ 152 (1196)
.+.|.+++|+|+++.|++++.||.|++|+..+++. ..+..|..+|.+++|||||++||+++.|++|++|+.. ...+..
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 102 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 102 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence 36899999999999999999999999999987655 3556678999999999999999999999999998732 222221
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
+.+|...+.+++|+|||++|+ +++ .|++|+|||..+++....+..|.+.+.+++|+|
T Consensus 103 ----------------~~~~~~~v~~~~~~~~~~~l~-s~~------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (312)
T 4ery_A 103 ----------------LKGHSNYVFCCNFNPQSNLIV-SGS------FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159 (312)
T ss_dssp ----------------EECCSSCEEEEEECSSSSEEE-EEE------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred ----------------EcCCCCCEEEEEEcCCCCEEE-EEe------CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC
Confidence 225667789999999999999 565 468999999989999999999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
+|++|++++.|+ .|++|+.. +..... +...+...|..++|+|+|++|++++.|+ .|++|++.+...
T Consensus 160 ~~~~l~~~~~d~------~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~-- 226 (312)
T 4ery_A 160 DGSLIVSSSYDG------LCRIWDTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDYSKGKC-- 226 (312)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCEEEE--ECCSSCCCEEEEEECTTSSEEEEEETTT---EEEEEETTTTEE--
T ss_pred CCCEEEEEeCCC------cEEEEECCCCceeeE--EeccCCCceEEEEECCCCCEEEEEcCCC---eEEEEECCCCcE--
Confidence 999999999864 69999964 333222 2223345799999999999999999999 999999988652
Q ss_pred EEEEEEecCCc--EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-
Q 000992 312 KYEIRYLRRDG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL- 388 (1196)
Q Consensus 312 kq~l~~~~~~~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l- 388 (1196)
...+..+.... ....|++.+...|..++.+|. |++|++.... ....+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-------------------------i~vwd~~~~~-----~~~~~~ 276 (312)
T 4ery_A 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-------------------------VYIWNLQTKE-----IVQKLQ 276 (312)
T ss_dssp EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC-------------------------EEEEETTTCC-----EEEEEC
T ss_pred EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE-------------------------EEEEECCCch-----hhhhhh
Confidence 22222222221 233455444433444444443 4444443211 12333
Q ss_pred cCCCCEEEEEEecCCCCCEEEEEE--CCCcEEEEeCC
Q 000992 389 KFPTAVTEMAFYSKSSKNCLAAIL--SDGCLCVVDLP 423 (1196)
Q Consensus 389 ~~~~~V~~Vafspdg~~~~lAs~~--~dg~v~lw~~~ 423 (1196)
.|.+.|.+++|+|++ +.||+++ .|++|++|+.+
T Consensus 277 ~h~~~v~~~~~~p~~--~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 277 GHTDVVISTACHPTE--NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCSSCEEEEEECSSS--SEEEEEECTTTCCEEEEECC
T ss_pred ccCCcEEEEeecCcC--CceEEEEccCCccEEEecCC
Confidence 478899999999999 8999987 69999999975
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-30 Score=301.58 Aligned_cols=365 Identities=12% Similarity=0.110 Sum_probs=247.0
Q ss_pred ceeEEeeecCCC-EEEEE----------eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE
Q 000992 22 ILQFSALDIEQN-RLFFA----------SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL 90 (1196)
Q Consensus 22 ~~~~~~~d~~~~-~l~~~----------s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~L 90 (1196)
.+.+++|.+++. .++++ +.|+.|..|++ ..+.....+ .. +...+.|.+++|+|+++.|
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~--~~~~~~~~~-------~~--~~~~~~v~~~~~s~~~~~l 82 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSL--LAADSEKPI-------AS--LQVDSKFNDLDWSHNNKII 82 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEES--SSGGGCSCS-------CC--CCCSSCEEEEEECSSSSCE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEc--cCCCCCcEE-------EE--EecCCceEEEEECCCCCeE
Confidence 677889999987 78888 77889999999 443321011 11 1114689999999999999
Q ss_pred EEEECCCcEEEEECCC----C-eEEEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEeccCceeeeeecccccCcccc
Q 000992 91 IVGTSSGLLLLHSVDG----N-ATEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDV 164 (1196)
Q Consensus 91 a~as~dG~I~lw~~~~----~-~~e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~V 164 (1196)
++++.||+|++|+..+ . .+..+..|.+.|.+++|||| +++|++++.|++|++|+..-. ..... ....+
T Consensus 83 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~--~~~~~ 156 (416)
T 2pm9_A 83 AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC----TESPS--NYTPL 156 (416)
T ss_dssp EEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT----SSCTT--TCCCB
T ss_pred EEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC----ccccc--ccccc
Confidence 9999999999999987 2 45556667899999999999 999999999999988753211 10000 00000
Q ss_pred ccCccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC------CCceeEEEEcCCC-Ce
Q 000992 165 HEPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK------AFMGAVLEWMPSG-AN 236 (1196)
Q Consensus 165 s~tqf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~------~~~v~slawsPdG-~~ 236 (1196)
....+.+|...+.+++|+|| +.+|+ +++ .+++|+|||..+++.......+ ...+.+++|+|+| ++
T Consensus 157 ~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 157 TPGQSMSSVDEVISLAWNQSLAHVFA-SAG------SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp CCCCSCCSSCCCCEEEECSSCTTEEE-EES------SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred ccccccCCCCCeeEEEeCCCCCcEEE-EEc------CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE
Confidence 01122356778899999999 67888 565 4689999999899988888765 6789999999998 68
Q ss_pred EEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEEEE
Q 000992 237 IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI 315 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l 315 (1196)
|++++.+.. ...|++|+......-...+...+...|.+++|+| |+++|++++.|+ +|++|++.+... ...+
T Consensus 230 l~~~~~d~~---~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg---~v~~wd~~~~~~--~~~~ 301 (416)
T 2pm9_A 230 VATATGSDN---DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN---TVLLWNPESAEQ--LSQF 301 (416)
T ss_dssp EEEEECCSS---SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS---EEEEECSSSCCE--EEEE
T ss_pred EEEEECCCC---CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC---CEEEeeCCCCcc--ceee
Confidence 999887631 2269999965321100112212456899999999 999999999999 999999987642 3444
Q ss_pred EEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCC-----CeeEEEEcCCEEEEeeccccC--C--CCCceee
Q 000992 316 RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME-----NSTALVIDGSKILVTPLSLSL--M--PPPMYLF 386 (1196)
Q Consensus 316 ~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d-----~~~v~viDg~~l~lt~l~~~~--v--pppm~~~ 386 (1196)
..+......+.|+|+++..|..++.+|.+. .|++.... .......++....+++-.... . +..+...
T Consensus 302 ~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~----iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (416)
T 2pm9_A 302 PARGNWCFKTKFAPEAPDLFACASFDNKIE----VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQ 377 (416)
T ss_dssp ECSSSCCCCEEECTTCTTEEEECCSSSEEE----EEESCCCCCSSCC----------------------CCSCCCSSCCC
T ss_pred cCCCCceEEEEECCCCCCEEEEEecCCcEE----EEEccCCCCCcccccccccccCCccccccccccccccccccccccc
Confidence 444434478999999976688877788776 45443100 000111122222222211100 0 0000000
Q ss_pred ee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 387 SL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 387 ~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.. .+..+|.+++||||| ++||+++.||+|+||++.+
T Consensus 378 ~~~~~~~~~~~~~~s~dg--~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 378 APTWYGEPSPAAHWAFGG--KLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCSTTCCCSCCCEEETTT--EEECBCTTSSCBCCBCCCC
T ss_pred CCccccCCccceEEeeCC--eEEEEeCCCCeEEEEEecc
Confidence 00 156678899999999 8999999999999999875
No 28
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=1.4e-27 Score=294.02 Aligned_cols=386 Identities=11% Similarity=0.110 Sum_probs=266.0
Q ss_pred c-eeEEeeec--CCCEEEEEeCCCcEEEEecccccc------cccceeeccccccccccCCCCCCEEEEEEccCCCEEEE
Q 000992 22 I-LQFSALDI--EQNRLFFASSANNIYSAQLSSFQN------ERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV 92 (1196)
Q Consensus 22 ~-~~~~~~d~--~~~~l~~~s~~~~i~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~ 92 (1196)
. +.+++|.+ ++..|++++.|+.|..|++ .++ +.. .+.+ +..+ ...|.+++|+||++.|++
T Consensus 65 ~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~--~~~~~~~~~~~~-~~~~----~~~~----~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 65 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGW--TFDKESNSVEVN-VKSE----FQVL----AGPISDISWDFEGRRLCV 133 (615)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEE--EEEGGGTEEEEE-EEEE----EECC----SSCEEEEEECTTSSEEEE
T ss_pred ceEEEEEECcCCCCCEEEEecCCCEEEEEeC--CCCccccccccc-ccch----hhcc----cccEEEEEEeCCCCEEEE
Confidence 6 89999999 9999999999999999999 433 111 1111 2222 468999999999999999
Q ss_pred EECC----CcEEEEECCCCeEEEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEec-cCceeeeeecccccCcccccc
Q 000992 93 GTSS----GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 93 as~d----G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
++.+ |.|.+|+. +..+.....|.+.|.+++|+|||+ +|++++.|++|.+|+. .+..+..
T Consensus 134 ~~~~~~~~~~v~~~d~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-------------- 198 (615)
T 1pgu_A 134 VGEGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-------------- 198 (615)
T ss_dssp EECCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE--------------
T ss_pred eccCCCCccEEEEEEC-CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee--------------
Confidence 9988 78999993 334555556789999999999998 8999999999999872 2222222
Q ss_pred CccccCCC---CeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEe-c---cCCCceeEEEEcCCCCeEE
Q 000992 167 PELSSSFS---FKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-E---LKAFMGAVLEWMPSGANIA 238 (1196)
Q Consensus 167 tqf~~~~~---~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e---~~~~~v~slawsPdG~~IA 238 (1196)
+.+|.. .+.+++|+|| |++|+ +++ .++.|+|||..+|+..... . +|.+.+.+++|+ +|++|+
T Consensus 199 --~~~~~~~~~~v~~~~~~~~~~~~l~-~~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 268 (615)
T 1pgu_A 199 --DRTHHKQGSFVRDVEFSPDSGEFVI-TVG------SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFA 268 (615)
T ss_dssp --ECSSSCTTCCEEEEEECSTTCCEEE-EEE------TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEE
T ss_pred --ecccCCCCceEEEEEECCCCCCEEE-EEe------CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEE
Confidence 224555 7899999999 99999 565 4689999998899999988 6 789999999999 999999
Q ss_pred EEecCCCCCCCCeEEEEeCC-CeeEEEEEec-------------------------------------------cC----
Q 000992 239 AVYDRKSENKCPSIVFYERN-GLERSSFDIN-------------------------------------------EQ---- 270 (1196)
Q Consensus 239 s~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~-------------------------------------------~~---- 270 (1196)
+++.+ ..|++|+.. |.....+... .+
T Consensus 269 ~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v 342 (615)
T 1pgu_A 269 TVGAD------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGI 342 (615)
T ss_dssp EEETT------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCE
T ss_pred EEcCC------CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCE
Confidence 99986 468888854 4332222211 00
Q ss_pred ----------------------------CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE-------------
Q 000992 271 ----------------------------IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW------------- 309 (1196)
Q Consensus 271 ----------------------------~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w------------- 309 (1196)
+...|.+++| +++..|++++.|+ +|++|+..+...
T Consensus 343 ~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~---~i~~~~~~~~~~~~~~~~~~~s~~~ 418 (615)
T 1pgu_A 343 TALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDD---TLKVNGITKHEFGSQPKVASANNDG 418 (615)
T ss_dssp EEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTT---EEEETTEEEEECSSCEEEEEECSSS
T ss_pred EEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCC---CEEEEEcccCcccCCceEEEEcCCC
Confidence 1122333444 3355555555555 566665543110
Q ss_pred -------------------EEEEEEEEecCCcEEEEEccCCCceEEEEec-CCcEEEEEEE----------------Eee
Q 000992 310 -------------------YLKYEIRYLRRDGIRFMWHPTKPLQLICWTL-DGQITTYNFI----------------WTT 353 (1196)
Q Consensus 310 -------------------ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~----------------~~~ 353 (1196)
...+.+. +......+.|+ +..|.+++. +|.+..++.. ..+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 494 (615)
T 1pgu_A 419 FTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 494 (615)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE
T ss_pred CEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEE
Confidence 0000010 01112455555 234666666 7777654421 111
Q ss_pred e--cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec--CCCCEEEEEEec----------CCCCCEEEEEECCCcEEE
Q 000992 354 A--VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK--FPTAVTEMAFYS----------KSSKNCLAAILSDGCLCV 419 (1196)
Q Consensus 354 ~--~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~--~~~~V~~Vafsp----------dg~~~~lAs~~~dg~v~l 419 (1196)
. +++..+++...+..+++|++... .....+. |...|.+++|+| ++ ++||+++.||+|++
T Consensus 495 ~~s~~g~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~--~~l~~~~~dg~i~i 567 (615)
T 1pgu_A 495 SISPSETYIAAGDVMGKILLYDLQSR-----EVKTSRWAFRTSKINAISWKPAEKGANEEEIEE--DLVATGSLDTNIFI 567 (615)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTT-----EEEECCSCCCSSCEEEEEECCCC------CCSC--CEEEEEETTSCEEE
T ss_pred EECCCCCEEEEcCCCCeEEEeeCCCC-----cceeEeecCCCCceeEEEEcCccccccccccCC--CEEEEEcCCCcEEE
Confidence 1 33344455556667888887532 2233443 888999999999 88 89999999999999
Q ss_pred EeCCCC-CccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 420 VDLPAP-DMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 420 w~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
|++.+. .+...+. .|...|..++|+|++. |++++.+ ..+.+|++.
T Consensus 568 w~~~~~~~~~~~~~------------~h~~~v~~l~~s~~~~-l~s~~~d--~~v~iw~~~ 613 (615)
T 1pgu_A 568 YSVKRPMKIIKALN------------AHKDGVNNLLWETPST-LVSSGAD--ACIKRWNVV 613 (615)
T ss_dssp EESSCTTCCEEETT------------SSTTCEEEEEEEETTE-EEEEETT--SCEEEEEEC
T ss_pred EECCCCceechhhh------------cCccceEEEEEcCCCC-eEEecCC--ceEEEEeee
Confidence 999864 3332333 3456899999999999 8887765 678899873
No 29
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=3.5e-28 Score=275.12 Aligned_cols=317 Identities=11% Similarity=0.071 Sum_probs=236.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..++++..+..++.|.. ..... .+. ..+| .+.|.+++|+|+++.|++++ ||.|++
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~--~~~~~--~~~-----~~~h----~~~v~~~~~~~~~~~l~~~~-dg~i~i 76 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGI--PRHAR--QIN-----TLNH----GEVVCAVTISNPTRHVYTGG-KGCVKV 76 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTC--CSEEE--EEE-----EECC----SSCCCEEEECSSSSEEEEEC-BSEEEE
T ss_pred ceeEEEECCCCCEEEeecCCCcEecccc--CCccc--cce-----eccC----CCceEEEEEecCCcEEEEcC-CCeEEE
Confidence 6788999999999988876665655554 12111 111 1222 46899999999999999998 999999
Q ss_pred EECCCCe----EEEee--eecCcEEEEEECCCCCEEEEEeCCceEEEEeccC-ceeeeeecccccCccccccCccccCCC
Q 000992 102 HSVDGNA----TEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW-DLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 102 w~~~~~~----~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~-d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
|+..++. +.... .|...|.+++|+|||+.|++++.|++|.+|+..- ...... .+..|..
T Consensus 77 w~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--------------~~~~~~~ 142 (337)
T 1gxr_A 77 WDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA--------------ELTSSAP 142 (337)
T ss_dssp EETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE--------------EEECSSS
T ss_pred EECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee--------------ecccCCC
Confidence 9997642 22222 4678999999999999999999999999986431 110111 1224556
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.+.+++|+|||++|+ +++ .++.|++||..+++....+..|.+.+.+++|+|+|++|++++.+ ..|.+
T Consensus 143 ~i~~~~~~~~~~~l~-~~~------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~~ 209 (337)
T 1gxr_A 143 ACYALAISPDSKVCF-SCC------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD------NTVRS 209 (337)
T ss_dssp CEEEEEECTTSSEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT------SEEEE
T ss_pred ceEEEEECCCCCEEE-EEe------CCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC------CcEEE
Confidence 789999999999999 565 46899999998999999999899999999999999999999985 47999
Q ss_pred EeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 255 YERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 255 ~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
|+.. +.....+. ....|..++|+|||++|++++.++ .|++|+..+..- ..+..+......+.|+|++..
T Consensus 210 ~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~---~i~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 210 WDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESS---NVEVLHVNKPDK---YQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp EETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSSCE---EEECCCSSCEEEEEECTTSSE
T ss_pred EECCCCceEeeec----CCCceEEEEECCCCCEEEEEcCCC---cEEEEECCCCCe---EEEcCCccceeEEEECCCCCE
Confidence 9954 44333322 345799999999999999999998 899999987642 122222223388999998864
Q ss_pred eEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC
Q 000992 334 QLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS 413 (1196)
Q Consensus 334 ~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~ 413 (1196)
|.+++.+|.+. +|++... .......+...|.+++|+|++ +.|++++.
T Consensus 280 -l~~~~~dg~i~-------------------------~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~ 326 (337)
T 1gxr_A 280 -FVSTGKDNLLN-------------------------AWRTPYG-----ASIFQSKESSSVLSCDISVDD--KYIVTGSG 326 (337)
T ss_dssp -EEEEETTSEEE-------------------------EEETTTC-----CEEEEEECSSCEEEEEECTTS--CEEEEEET
T ss_pred -EEEecCCCcEE-------------------------EEECCCC-----eEEEEecCCCcEEEEEECCCC--CEEEEecC
Confidence 56665555443 2222211 011234577889999999999 89999999
Q ss_pred CCcEEEEeC
Q 000992 414 DGCLCVVDL 422 (1196)
Q Consensus 414 dg~v~lw~~ 422 (1196)
||+|++|++
T Consensus 327 dg~i~iw~~ 335 (337)
T 1gxr_A 327 DKKATVYEV 335 (337)
T ss_dssp TSCEEEEEE
T ss_pred CCeEEEEEE
Confidence 999999985
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7e-29 Score=289.97 Aligned_cols=329 Identities=16% Similarity=0.186 Sum_probs=231.8
Q ss_pred CCEEEEEEccCCC-EEEEEECCCcEEEEEC----CCCe-------EEEeee----------ecCcEEEEEECCCCCEEEE
Q 000992 76 DSITAFDYLMEKE-ALIVGTSSGLLLLHSV----DGNA-------TEVVGR----------VEGGVRFISPSPDGDLLGV 133 (1196)
Q Consensus 76 ~~v~~v~~spd~~-~La~as~dG~I~lw~~----~~~~-------~e~vg~----------~~~~I~~~awSPDg~~LA~ 133 (1196)
+.|.+++|+|+|+ .||+++.||.|++|+. .+++ ...+.+ |.+.|.+++|||||++||+
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 5799999999999 9999999999999999 7765 223333 5779999999999999999
Q ss_pred EeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc
Q 000992 134 TTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT 213 (1196)
Q Consensus 134 ~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~ 213 (1196)
++.|++|.+|+.....+... .+|...+.+++|+|||++|+ +++ .++.|++||..+|+
T Consensus 126 ~~~dg~i~i~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~l~-~~~------~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 126 GVENGELRLWNKTGALLNVL----------------NFHRAPIVSVKWNKDGTHII-SMD------VENVTILWNVISGT 182 (425)
T ss_dssp EETTSCEEEEETTSCEEEEE----------------CCCCSCEEEEEECTTSSEEE-EEE------TTCCEEEEETTTTE
T ss_pred EeCCCeEEEEeCCCCeeeec----------------cCCCccEEEEEECCCCCEEE-EEe------cCCeEEEEECCCCc
Confidence 99999999997544433322 24556789999999999999 565 46899999999999
Q ss_pred EEEEeccCCCc---------------eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEE
Q 000992 214 LQASSELKAFM---------------GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELL 278 (1196)
Q Consensus 214 l~~~~e~~~~~---------------v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~l 278 (1196)
.......+... +.+++|+|++. +++++.+ ..|.+|+......- ..+. .+...|..+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------g~i~~~d~~~~~~~-~~~~-~~~~~i~~~ 253 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPK------GAIFVYQITEKTPT-GKLI-GHHGPISVL 253 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETTE-EEEECGG------GCEEEEETTCSSCS-EEEC-CCSSCEEEE
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCC------CeEEEEEcCCCcee-eeec-cCCCceEEE
Confidence 98888766665 89999999976 5555554 46999996532211 1222 235679999
Q ss_pred EEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCC
Q 000992 279 KWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358 (1196)
Q Consensus 279 aWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~ 358 (1196)
+|+|||++|++++.|+ .|++|+..+... ...+..+......+.|+|++ .+.+++.+|.+. .|+
T Consensus 254 ~~~~~~~~l~~~~~d~---~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~----i~d------ 316 (425)
T 1r5m_A 254 EFNDTNKLLLSASDDG---TLRIWHGGNGNS--QNCFYGHSQSIVSASWVGDD--KVISCSMDGSVR----LWS------ 316 (425)
T ss_dssp EEETTTTEEEEEETTS---CEEEECSSSBSC--SEEECCCSSCEEEEEEETTT--EEEEEETTSEEE----EEE------
T ss_pred EECCCCCEEEEEcCCC---EEEEEECCCCcc--ceEecCCCccEEEEEECCCC--EEEEEeCCCcEE----EEE------
Confidence 9999999999999999 899999886532 12332232334889999988 466666666543 232
Q ss_pred eeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc-ccccCCce
Q 000992 359 STALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML-EDLEGTEF 436 (1196)
Q Consensus 359 ~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~-~~~~g~~~ 436 (1196)
++.. .....+ .|...|.+++|+|++ +.||+++.||+|++|++.+.... ..+.+..-
T Consensus 317 ---------------~~~~-----~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 374 (425)
T 1r5m_A 317 ---------------LKQN-----TLLALSIVDGVPIFAGRISQDG--QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRD 374 (425)
T ss_dssp ---------------TTTT-----EEEEEEECTTCCEEEEEECTTS--SEEEEEETTSCEEEEECHHHHC----------
T ss_pred ---------------CCCC-----cEeEecccCCccEEEEEEcCCC--CEEEEEECCCeEEEEECCCCccceeeeecccc
Confidence 2111 011122 367789999999999 89999999999999999653200 00000000
Q ss_pred --------eeeeecccccCC--cEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 437 --------VVEACISETAFG--SVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 437 --------~~~~~~~~~~~~--~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
.....+ ..+.. .|..++|+|++++|++++.+ ..+.+|++
T Consensus 375 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iw~~ 423 (425)
T 1r5m_A 375 GILNPLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSL--QEGSVVAI 423 (425)
T ss_dssp ----CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESS--SCCEEEEC
T ss_pred cccCcccchhhhhh-cCcccCCceEEEEccCCCceEEEEecC--ceEEEEee
Confidence 000111 23333 89999999999999988765 57888876
No 31
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=2.2e-28 Score=289.80 Aligned_cols=274 Identities=12% Similarity=0.129 Sum_probs=222.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.|+.|..||. .+++.. .+ +.+| .+.|.+++|+|+|+.|++|+.||+|++
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~--~~~~~~---~~----l~~h----~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDY--ETGDFE---RT----LKGH----TDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEET--TTCCCC---EE----ECCC----SSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCcEE---EE----Eecc----CCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 6889999999999999999999999999 554431 11 3444 468999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||..++++ .....|...|.+++|+|||+.|++++.|++|++|+. ....+. .|.+|...+..+
T Consensus 177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~----------------~~~~h~~~v~~~ 240 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK----------------TFTGHREWVRMV 240 (410)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE----------------EEECCSSCEEEE
T ss_pred EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE----------------EEeCCCccEEEE
Confidence 99988654 455567899999999999999999999999999863 222222 123566788999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC--------------------CCeEEE
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS--------------------GANIAA 239 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd--------------------G~~IAs 239 (1196)
+|+|||.+|+ +++ .|++|+|||..++++...+.+|...+.+++|+|+ |.+|++
T Consensus 241 ~~~~~g~~l~-s~s------~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 241 RPNQDGTLIA-SCS------NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp EECTTSSEEE-EEE------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred EECCCCCEEE-EEc------CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 9999999999 565 4689999999899999999999999999999997 778999
Q ss_pred EecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe
Q 000992 240 VYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 318 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~ 318 (1196)
++.| ..|++|+. +|..... +.. +...|.+++|+|+|++|++++.|+ +|++|+..+... .+.+..|
T Consensus 314 gs~D------~~i~iwd~~~~~~~~~--~~~-h~~~v~~v~~~~~g~~l~s~s~D~---~i~vwd~~~~~~--~~~~~~h 379 (410)
T 1vyh_C 314 GSRD------KTIKMWDVSTGMCLMT--LVG-HDNWVRGVLFHSGGKFILSCADDK---TLRVWDYKNKRC--MKTLNAH 379 (410)
T ss_dssp EETT------SEEEEEETTTTEEEEE--EEC-CSSCEEEEEECSSSSCEEEEETTT---EEEEECCTTSCC--CEEEECC
T ss_pred EeCC------CeEEEEECCCCceEEE--EEC-CCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCce--EEEEcCC
Confidence 9986 46999995 4544432 333 456899999999999999999999 999999987642 2455555
Q ss_pred cCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 319 RRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 319 ~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
......+.|+|+++. |..++.||.+.+
T Consensus 380 ~~~v~~l~~~~~~~~-l~sgs~D~~i~v 406 (410)
T 1vyh_C 380 EHFVTSLDFHKTAPY-VVTGSVDQTVKV 406 (410)
T ss_dssp SSCEEEEEECSSSSC-EEEEETTSEEEE
T ss_pred CCcEEEEEEcCCCCE-EEEEeCCCcEEE
Confidence 444589999999876 677777777654
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=2.4e-29 Score=292.58 Aligned_cols=314 Identities=15% Similarity=0.099 Sum_probs=199.6
Q ss_pred EccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC------CceEEEEeccCceeeeeecc
Q 000992 83 YLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG------FGQILVMTHDWDLLYENPLE 156 (1196)
Q Consensus 83 ~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~------d~tV~l~~~~~d~~~~~~l~ 156 (1196)
..+++.++ .++.+.....|++.... ...|+..|.+++|||||++||+++. |++|.+|. .....+..
T Consensus 13 ~g~~~~~~-~~~g~~~~~~w~~p~~~---p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~----~~~~~~~~ 84 (357)
T 4g56_B 13 LGTENLYF-QSNGSSKGSAWGRPVTA---PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFK----DPEGAPNE 84 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEES----SCC---CG
T ss_pred CCccceEE-ecCCCccccccCCCCCC---cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEE----CCCCCcce
Confidence 34444333 33445667889875432 2347899999999999999999998 55565553 21111111
Q ss_pred cccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE----eccCCCceeEEEEcC
Q 000992 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS----SELKAFMGAVLEWMP 232 (1196)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~----~e~~~~~v~slawsP 232 (1196)
.. .....+|...|.+++|+|||++++ .+ .+++|||||..+|+.... ..+|.+.|.+++|+|
T Consensus 85 ~~-------~~~~~~~~~~V~~~~~s~d~~~l~-~s-------~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 85 SL-------CTAGVQTEAGVTDVAWVSEKGILV-AS-------DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp GG-------CSEEEECSSCEEEEEEETTTEEEE-EE-------TTSCEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred eE-------ecccCCCCCCEEEEEEcCCCCEEE-EE-------CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 00 011225667899999999998877 44 368999999977765432 346889999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
+|++||+++.+. .|++|+.+ |.... .++. +...|.+|+|+|++. ++++++.|+ +|++|++.+....
T Consensus 150 dg~~l~sgs~dg------~v~iwd~~~~~~~~--~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg---~v~~wd~~~~~~~ 217 (357)
T 4g56_B 150 DGTQAVSGGKDF------SVKVWDLSQKAVLK--SYNA-HSSEVNCVAACPGKDTIFLSCGEDG---RILLWDTRKPKPA 217 (357)
T ss_dssp SSSEEEEEETTS------CEEEEETTTTEEEE--EECC-CSSCEEEEEECTTCSSCEEEEETTS---CEEECCTTSSSCB
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEE--EEcC-CCCCEEEEEEccCCCceeeeeccCC---ceEEEECCCCcee
Confidence 999999999864 69999965 43333 2333 356899999999986 789999999 9999998765421
Q ss_pred EEEEEEEecC-C-cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee
Q 000992 311 LKYEIRYLRR-D-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1196)
Q Consensus 311 lkq~l~~~~~-~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l 388 (1196)
..+.+... . ...+.|+|++...|++++.+|.+. +|+++.. .+.+++
T Consensus 218 --~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~-------------------------~wd~~~~-----~~~~~~ 265 (357)
T 4g56_B 218 --TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVS-------------------------LVNIKNP-----DSAQTS 265 (357)
T ss_dssp --CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEE-------------------------EEESSCG-----GGCEEE
T ss_pred --eeeeeccccccccchhhhhcccceEEEeeccccee-------------------------EEECCCC-----cEeEEE
Confidence 11222111 2 378999999877677766665543 3333221 112334
Q ss_pred -cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEec-CCeEEEEEe
Q 000992 389 -KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLG-SHLLLSVSH 466 (1196)
Q Consensus 389 -~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~-d~~lla~~~ 466 (1196)
.|...|++|+|+|++. ++||+++.|++|+||+..+...... . .|.+.|..++|+| |+.+||+++
T Consensus 266 ~~~~~~v~~l~~sp~~~-~~lasgs~D~~i~iwd~~~~~~~~~-~------------~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSS-PFLASISEDCTVAVLDADFSEVFRD-L------------SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp CCCSSCEEEEEECSSSS-CCEEEEETTSCEEEECTTSCEEEEE-C------------CCSSCEEEEEECSSSTTEEEEEE
T ss_pred eccceeEEEEEEcCCCC-CEEEEEeCCCEEEEEECCCCcEeEE-C------------CCCCCEEEEEEeCCCCCEEEEEc
Confidence 3778999999999983 5799999999999999976433311 1 3457899999998 788999988
Q ss_pred cCCCCceEEEEee
Q 000992 467 HGPRHSNYFRGAT 479 (1196)
Q Consensus 467 ~~~~~~~~~~~~~ 479 (1196)
.+ .++.+|.+.
T Consensus 332 ~D--g~v~iW~~~ 342 (357)
T 4g56_B 332 WD--HKVLHHHLP 342 (357)
T ss_dssp TT--SCEEEEECC
T ss_pred CC--CeEEEEECC
Confidence 76 689999884
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=8.2e-28 Score=277.01 Aligned_cols=275 Identities=9% Similarity=0.034 Sum_probs=217.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.|+.|..||. .++.. +.+ +..+ .+.|.+++|+|+|+.|++++.||.|++
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~--~~~~~---~~~----~~~~----~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDS--YTTNK---VHA----IPLR----SSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEET--TTCCE---EEE----EECS----SSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEEC--CCCCc---ceE----eecC----CccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 7899999999999999999999999998 44432 121 2222 357999999999999999999999999
Q ss_pred EECCCC----e-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCC
Q 000992 102 HSVDGN----A-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 102 w~~~~~----~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
|+..++ . ......|.+.|.+++|+|++. |++++.|++|++|+. ....+.. |.+|...
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~----------------~~~h~~~ 186 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTT----------------FTGHTGD 186 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEE----------------ECCCSSC
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEE----------------EcCCCCc
Confidence 999764 2 234455789999999999976 889999999999873 2222221 2356678
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
+.+++|+|||++|+ +++ .|++|+|||..+|.+..++.+|.+.+.+++|+|+|++||+++.|+ .|++|
T Consensus 187 v~~~~~~~~~~~l~-sg~------~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~------~v~iw 253 (340)
T 1got_B 187 VMSLSLAPDTRLFV-SGA------CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA------TCRLF 253 (340)
T ss_dssp EEEEEECTTSSEEE-EEE------TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEE
T ss_pred eEEEEECCCCCEEE-EEe------CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC------cEEEE
Confidence 89999999999999 565 468999999989999999999999999999999999999999864 69999
Q ss_pred eCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 256 ERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 256 e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
+.. +.....+.. ......|.+++|||||++||+++.|+ +|++|+..+.. ....+..|......+.|+|++..
T Consensus 254 d~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~d~---~i~vwd~~~~~--~~~~~~~h~~~v~~~~~s~dg~~- 326 (340)
T 1got_B 254 DLRADQELMTYSH-DNIICGITSVSFSKSGRLLLAGYDDF---NCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGMA- 326 (340)
T ss_dssp ETTTTEEEEEECC-TTCCSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCC--EEEEEECCSSCEEEEEECTTSSC-
T ss_pred ECCCCcEEEEEcc-CCcccceEEEEECCCCCEEEEECCCC---eEEEEEcccCc--EeeEeecCCCcEEEEEEcCCCCE-
Confidence 954 333222211 11124699999999999999999999 99999987654 23455555444588999999875
Q ss_pred EEEEecCCcEEE
Q 000992 335 LICWTLDGQITT 346 (1196)
Q Consensus 335 L~~~~~~g~~~~ 346 (1196)
|+.++.||.+.+
T Consensus 327 l~s~s~D~~i~i 338 (340)
T 1got_B 327 VATGSWDSFLKI 338 (340)
T ss_dssp EEEEETTSCEEE
T ss_pred EEEEcCCccEEe
Confidence 777777887754
No 34
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.6e-28 Score=282.97 Aligned_cols=363 Identities=12% Similarity=0.078 Sum_probs=245.9
Q ss_pred ceeEEeeecCCC-EEEEEeCCCcEEEEec----ccccccccce---eeccccccccccCC--CCCCEEEEEEccCCCEEE
Q 000992 22 ILQFSALDIEQN-RLFFASSANNIYSAQL----SSFQNERASI---KTAISAEIEHIDLE--PGDSITAFDYLMEKEALI 91 (1196)
Q Consensus 22 ~~~~~~~d~~~~-~l~~~s~~~~i~~~~~----~~~~~~~~~~---~~~~~~~l~~~~~~--~~~~v~~v~~spd~~~La 91 (1196)
.+.+++|.+++. .|++++.|+.|..|++ . ..+. .+. ...+...+..+... ..+.|.+++|+|+++.|+
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 124 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQ-EGKK-YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV 124 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccC-Cccc-cccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence 788999999999 9999999999999998 3 1110 001 11111101110000 134899999999999999
Q ss_pred EEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccc
Q 000992 92 VGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELS 170 (1196)
Q Consensus 92 ~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~ 170 (1196)
+++.||+|++|+..+..+..+..|...|.+++|+|||+.|++++.|++|.+|+. ....+.....+... ...+....+.
T Consensus 125 ~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~ 203 (425)
T 1r5m_A 125 TGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG-GSSINAENHS 203 (425)
T ss_dssp EEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------
T ss_pred EEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC-ccceeecccc
Confidence 999999999999766666666667899999999999999999999999999974 34443333322111 0001011111
Q ss_pred cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 171 ~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
+....+.+++|+|++.+++ ++ .++.|++||..+++......+|.+.+.+++|+|+|++|++++.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~--~~------~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------ 269 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDDKFVI--PG------PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG------ 269 (425)
T ss_dssp --CCCBSCCEEEETTEEEE--EC------GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTS------
T ss_pred CCcceeeEEEEcCCCEEEE--Ec------CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCC------
Confidence 2223378999999987554 44 358999999989988888888999999999999999999999864
Q ss_pred eEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEcc
Q 000992 251 SIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 251 ~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp 329 (1196)
.|.+|+.. +.... .+.. +...|.+++|+||| .|++++.|+ .|++|++.+... ...+..+......+.|+|
T Consensus 270 ~i~i~d~~~~~~~~--~~~~-~~~~i~~~~~~~~~-~l~~~~~d~---~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 270 TLRIWHGGNGNSQN--CFYG-HSQSIVSASWVGDD-KVISCSMDG---SVRLWSLKQNTL--LALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp CEEEECSSSBSCSE--EECC-CSSCEEEEEEETTT-EEEEEETTS---EEEEEETTTTEE--EEEEECTTCCEEEEEECT
T ss_pred EEEEEECCCCccce--EecC-CCccEEEEEECCCC-EEEEEeCCC---cEEEEECCCCcE--eEecccCCccEEEEEEcC
Confidence 69999954 32222 2222 35679999999999 999999999 999999987652 233433333348899999
Q ss_pred CCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec-CCC--CEEEEEEecCCCCC
Q 000992 330 TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPT--AVTEMAFYSKSSKN 406 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~-~~~--~V~~Vafspdg~~~ 406 (1196)
++.. |.+++.+|.+.+ |++....... ....+..-.++ . ..+ +.....+. |.. .|.+++|+|++ +
T Consensus 341 ~~~~-l~~~~~dg~i~i----~~~~~~~~~~-~~~~~~~~~~~--~--~~~-~~~~~~~~~~~~~~~v~~~~~s~~~--~ 407 (425)
T 1r5m_A 341 DGQK-YAVAFMDGQVNV----YDLKKLNSKS-RSLYGNRDGIL--N--PLP-IPLYASYQSSQDNDYIFDLSWNCAG--N 407 (425)
T ss_dssp TSSE-EEEEETTSCEEE----EECHHHHC-------------------CEE-CCEEEEECCTTCCCCEEEEEECTTS--S
T ss_pred CCCE-EEEEECCCeEEE----EECCCCccce-eeeeccccccc--C--ccc-chhhhhhcCcccCCceEEEEccCCC--c
Confidence 9865 777777888764 4443100000 00000000000 0 001 11223443 544 89999999999 8
Q ss_pred EEEEEECCCcEEEEeCC
Q 000992 407 CLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 407 ~lAs~~~dg~v~lw~~~ 423 (1196)
.||+++.||+|++|+++
T Consensus 408 ~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 408 KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEEESSSCCEEEECC
T ss_pred eEEEEecCceEEEEeec
Confidence 99999999999999986
No 35
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.5e-28 Score=275.88 Aligned_cols=300 Identities=12% Similarity=0.072 Sum_probs=206.8
Q ss_pred CccceecccccccccccCcccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeecccccccc-ccCCCCCCEE
Q 000992 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEH-IDLEPGDSIT 79 (1196)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~v~ 79 (1196)
|+.+.++.... .....+.+++|+++ .|++++.|+.|..|++ ..+... .+..+. .. | .+.|.
T Consensus 1 ~~~~~~~~~~~------~h~~~v~~~~~s~~--~las~~~D~~i~lw~~--~~~~~~-~~~~~~---~~~h----~~~v~ 62 (330)
T 2hes_X 1 MASINLIKSLK------LYKEKIWSFDFSQG--ILATGSTDRKIKLVSV--KYDDFT-LIDVLD---ETAH----KKAIR 62 (330)
T ss_dssp --CCEEEEEEE------CCSSCEEEEEEETT--EEEEEESSSCEEEEEC--SSSCCE-EEEEEC---TTCC----CSCEE
T ss_pred Ccccccceeec------cCCCceeeeccCCC--EEEEEcCCCEEEEEEe--cCCCeE-EEEEEe---cCCc----cCCEE
Confidence 56666654321 11227888888876 8999999999999998 433211 111110 11 2 46799
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCC-------e-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 80 AFDYLMEKEALIVGTSSGLLLLHSVDGN-------A-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 80 ~v~~spd~~~La~as~dG~I~lw~~~~~-------~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
+++|+|+++.|++++.||+|++|+..+. . +.....|.+.|.+++|||||++||+++.|++|++|+..-....
T Consensus 63 ~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence 9999999999999999999999998531 2 2345557899999999999999999999999999874210000
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLE 229 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~sla 229 (1196)
...+. .+.+|...|.+++|+|||.+|| +++ .|++|||||..++ ++..++.+|.+.+.+++
T Consensus 143 ~~~~~-----------~~~~h~~~v~~v~~~p~~~~l~-s~s------~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~ 204 (330)
T 2hes_X 143 YECIS-----------VLQEHSQDVKHVIWHPSEALLA-SSS------YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD 204 (330)
T ss_dssp CEEEE-----------EECCCSSCEEEEEECSSSSEEE-EEE------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred eEEEE-----------EeccCCCceEEEEECCCCCEEE-EEc------CCCeEEEEECCCCCeeEEEEccCCCCcEEEEE
Confidence 00111 1335677899999999999999 565 4689999997566 67788899999999999
Q ss_pred EcCC--CCeEEEEecCCCCCCCCeEEEEeCCCee-------EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 230 WMPS--GANIAAVYDRKSENKCPSIVFYERNGLE-------RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 230 wsPd--G~~IAs~s~d~~~~~~~~V~~~e~nGl~-------~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
|+|+ |.+||+++.|. +|++|+..+.. .....++..+...|.+++|+|++ +||+++.|+ +|+
T Consensus 205 ~~~~~~~~~l~s~s~D~------~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg---~v~ 274 (330)
T 2hes_X 205 FDKTEGVFRLCSGSDDS------TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG---VLA 274 (330)
T ss_dssp ECCSSSSCEEEEEETTS------CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS---CEE
T ss_pred ecCCCCeeEEEEEeCCC------eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC---EEE
Confidence 9999 78999999874 69999864320 11112333356789999999776 899999999 999
Q ss_pred EEEecCCEEEEEEEE-EEecC-CcEEEEEccC-CCceEEEEecCCcEEE
Q 000992 301 ICFFSNNHWYLKYEI-RYLRR-DGIRFMWHPT-KPLQLICWTLDGQITT 346 (1196)
Q Consensus 301 lW~~~n~~wylkq~l-~~~~~-~~~~v~Wsp~-~~~~L~~~~~~g~~~~ 346 (1196)
||+..+..|...... ..+.. ....+.|+|. ++..|+.++.||.+.+
T Consensus 275 iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~ 323 (330)
T 2hes_X 275 VYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323 (330)
T ss_dssp EEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred EEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence 999988776432222 12222 2378899994 2334677777776653
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=2.8e-28 Score=286.60 Aligned_cols=329 Identities=12% Similarity=0.067 Sum_probs=233.8
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
+...+|++++..|++++.++.|+.|+. .+.+.... +.. ...+....|+|+++.|++++.||+|++|
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~--~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~l~~~~~dg~i~iw 124 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNT--IIRDGSKM-------LKR-----ADYTAVDTAKLQMRRFILGTTEGDIKVL 124 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEEC--CSEETTTT-------SCS-----CCEEEEEEECSSSCEEEEEETTSCEEEE
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEe--cccceeeE-------Eec-----CCceEEEEEecCCCEEEEEECCCCEEEE
Confidence 346789999999999999999999998 44332110 111 2334555789999999999999999999
Q ss_pred ECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 103 SVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 103 ~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
|..+++.. ....|.+.|.+++|||||++||+++.|++|++|+.. ...+. .+.+|...|.+++
T Consensus 125 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~----------------~~~~h~~~v~~~~ 188 (420)
T 3vl1_A 125 DSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR----------------TLIGHRATVTDIA 188 (420)
T ss_dssp CTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE----------------EEECCSSCEEEEE
T ss_pred eCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce----------------EEcCCCCcEEEEE
Confidence 99987765 445678999999999999999999999999998732 22222 1235667899999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC---C---------------------CceeEEEEcCCCCe
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK---A---------------------FMGAVLEWMPSGAN 236 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~---~---------------------~~v~slawsPdG~~ 236 (1196)
|+|||++|+ +++ .|++|++||..+|+...++..+ . ..+.+++|+|+|++
T Consensus 189 ~~~~~~~l~-s~~------~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 189 IIDRGRNVL-SAS------LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EETTTTEEE-EEE------TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE
T ss_pred EcCCCCEEE-EEc------CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE
Confidence 999999999 565 4689999999899998887642 2 33455667899999
Q ss_pred EEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEEE
Q 000992 237 IAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq~ 314 (1196)
||+++.++ .|.+|+.. +.... .+...+...|.+++|+|+|+ +|++++.|+ +|++|++.+... ....
T Consensus 262 l~~~~~dg------~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg---~i~vwd~~~~~~-~~~~ 329 (420)
T 3vl1_A 262 VIAGHVSG------VITVHNVFSKEQTI--QLPSKFTCSCNSLTVDGNNANYIYAGYENG---MLAQWDLRSPEC-PVGE 329 (420)
T ss_dssp EEEEETTS------CEEEEETTTCCEEE--EECCTTSSCEEEEEECSSCTTEEEEEETTS---EEEEEETTCTTS-CSEE
T ss_pred EEEEcCCC------eEEEEECCCCceeE--EcccccCCCceeEEEeCCCCCEEEEEeCCC---eEEEEEcCCCcC-chhh
Confidence 99999864 59999954 33222 23333456899999999999 999999999 999999986532 1134
Q ss_pred EEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCC
Q 000992 315 IRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTA 393 (1196)
Q Consensus 315 l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~ 393 (1196)
+..+.... ..+ |.|++. .|..++.+|.+. .|++.... . +......+.|. ....+.+.
T Consensus 330 ~~~~~~~~v~~~-~~~~~~-~l~s~~~d~~v~----iw~~~~~~----------~----~~~~~~~~~~~--~~~~~~~~ 387 (420)
T 3vl1_A 330 FLINEGTPINNV-YFAAGA-LFVSSGFDTSIK----LDIISDPE----------S----ERPAIEFETPT--FLVSNDDA 387 (420)
T ss_dssp EEESTTSCEEEE-EEETTE-EEEEETTTEEEE----EEEECCTT----------C----CSCEECTTSCE--EECCSSCC
T ss_pred hhccCCCCceEE-EeCCCC-EEEEecCCccEE----EEeccCCC----------C----CccceeccCcc--EEccCCcc
Confidence 44434444 444 445443 355555555543 33332100 0 00000011121 12357788
Q ss_pred EEEEEEecCCCCC---EEEEEECCCcEEEEeCCC
Q 000992 394 VTEMAFYSKSSKN---CLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 394 V~~Vafspdg~~~---~lAs~~~dg~v~lw~~~~ 424 (1196)
|.+++|+|++ + .+.+++.+|.+.+|++++
T Consensus 388 v~~~~~s~~~--~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 388 VSQFCYVSDD--ESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCEEEEECCS--SSSCEEEEEETTTEEEEEESCC
T ss_pred eEEEEEccCC--CCcceEEEEcCCceEEEEeccC
Confidence 9999999999 6 677777899999999874
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=8.4e-28 Score=272.01 Aligned_cols=320 Identities=9% Similarity=-0.018 Sum_probs=235.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCC-e-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCc-eeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-A-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD-LLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~-~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d-~~~~ 152 (1196)
+.|.+++|+|||+.++++..++.+..|..... . +...+ |.+.|.+++|||||++|++++ |++|++|+..-. ....
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEEC-CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCccccceecc-CCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee
Confidence 46889999999999999998888877765442 2 23444 689999999999999999998 999999974311 1000
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc--EEEEeccCCCceeEEEE
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEW 230 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~--l~~~~e~~~~~v~slaw 230 (1196)
.. .....+|...+.+++|+|||++|+ +++ .+++|++||..+++ .......+.+.+.+++|
T Consensus 88 ~~-----------~~~~~~~~~~v~~~~~~~~~~~l~-~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 88 VS-----------QLDCLNRDNYIRSCKLLPDGCTLI-VGG------EASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp SE-----------EEECSCTTSBEEEEEECTTSSEEE-EEE------SSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred ee-----------cccccCCCCcEEEEEEcCCCCEEE-EEc------CCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 00 001114667889999999999999 565 46899999997777 55667778888999999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
+|+|++|++++.++ .|.+|+.. +.... .+.. +...|..++|+|||+.|++++.|+ .|++|++.+...
T Consensus 150 ~~~~~~l~~~~~dg------~v~~~d~~~~~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~ 217 (337)
T 1gxr_A 150 SPDSKVCFSCCSDG------NIAVWDLHNQTLVR--QFQG-HTDGASCIDISNDGTKLWTGGLDN---TVRSWDLREGRQ 217 (337)
T ss_dssp CTTSSEEEEEETTS------CEEEEETTTTEEEE--EECC-CSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEE
T ss_pred CCCCCEEEEEeCCC------cEEEEeCCCCceee--eeec-ccCceEEEEECCCCCEEEEEecCC---cEEEEECCCCce
Confidence 99999999999864 69999964 33322 2332 356799999999999999999999 999999987653
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~ 389 (1196)
...+. +......+.|+|++.. +.+++.+|.+.. |+. +... ......
T Consensus 218 --~~~~~-~~~~v~~~~~s~~~~~-l~~~~~~~~i~~----~~~---------------------~~~~-----~~~~~~ 263 (337)
T 1gxr_A 218 --LQQHD-FTSQIFSLGYCPTGEW-LAVGMESSNVEV----LHV---------------------NKPD-----KYQLHL 263 (337)
T ss_dssp --EEEEE-CSSCEEEEEECTTSSE-EEEEETTSCEEE----EET---------------------TSSC-----EEEECC
T ss_pred --Eeeec-CCCceEEEEECCCCCE-EEEEcCCCcEEE----EEC---------------------CCCC-----eEEEcC
Confidence 22222 1223388999998864 666666665542 222 1110 011124
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCC
Q 000992 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGP 469 (1196)
Q Consensus 390 ~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~ 469 (1196)
|...|.+++|+|++ +.|++++.||+|++|+..+...... ..+...+..++|+|++.+|++++.+
T Consensus 264 ~~~~v~~~~~~~~~--~~l~~~~~dg~i~~~~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~d- 327 (337)
T 1gxr_A 264 HESCVLSLKFAYCG--KWFVSTGKDNLLNAWRTPYGASIFQ-------------SKESSSVLSCDISVDDKYIVTGSGD- 327 (337)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEE-------------EECSSCEEEEEECTTSCEEEEEETT-
T ss_pred CccceeEEEECCCC--CEEEEecCCCcEEEEECCCCeEEEE-------------ecCCCcEEEEEECCCCCEEEEecCC-
Confidence 77889999999999 8999999999999999976433200 0134579999999999999988765
Q ss_pred CCceEEEEe
Q 000992 470 RHSNYFRGA 478 (1196)
Q Consensus 470 ~~~~~~~~~ 478 (1196)
..+.+|++
T Consensus 328 -g~i~iw~~ 335 (337)
T 1gxr_A 328 -KKATVYEV 335 (337)
T ss_dssp -SCEEEEEE
T ss_pred -CeEEEEEE
Confidence 67888876
No 38
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-30 Score=310.90 Aligned_cols=318 Identities=9% Similarity=-0.031 Sum_probs=227.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+||..+.+++.|+.|. |. ..... +.+|+ ..|..|+|+||| .++++.+
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~--d~--~~~~~----------l~gh~----~~v~~V~FsPdg-------~~~~~~~ 71 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG--QP--KYAKD----------INCNS----KNLFHVKEFPLE-------FENKLDF 71 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE--EE--CCCSC----------CSSBG----GGTEEEEEECCC-------CCCTTTT
T ss_pred cEEEEEECCCCCEEEEEcCCceee--cc--cccce----------ecCCC----ccEEEEEECCCC-------CcceEEE
Confidence 889999999999999999999777 55 22221 34453 589999999999 6888888
Q ss_pred EECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEE
Q 000992 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1196)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW 181 (1196)
|+.++...-..++ +..|.+++|||||++||+++.||+|++|++.. .+.... +. .++ ....+.+++|
T Consensus 72 ~~~~~~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~----~~~-------~~~sv~svaf 137 (588)
T 2j04_A 72 ELAQQNGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SK----GNL-------SSRTYHCFEW 137 (588)
T ss_dssp SCCCSSCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CS----SCS-------TTTCEEEEEE
T ss_pred EeCCCceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CC----Ccc-------ccccEEEEEE
Confidence 8876554434454 78899999999999999999999999997533 222111 11 111 0125789999
Q ss_pred ccCCceEEEeeccccccCCCCEEEEEECCCCcE-------EEEe----ccCCCceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-------QASS----ELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 182 spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l-------~~~~----e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
||||++|| +++ .|++|+|||..+|.+ ..+. .+|.++|.+++||||| ||+++.| .
T Consensus 138 SPDG~~LA-sgs------~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D------~ 202 (588)
T 2j04_A 138 NPIESSIV-VGN------EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSN------N 202 (588)
T ss_dssp CSSSSCEE-EEE------TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETT------C
T ss_pred cCCCCEEE-EEc------CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCC------C
Confidence 99999999 676 479999999977753 5665 6678899999999999 6666665 4
Q ss_pred eEEEEeCCCeeEEE--EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE-EecCCcEEEEE
Q 000992 251 SIVFYERNGLERSS--FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR-YLRRDGIRFMW 327 (1196)
Q Consensus 251 ~V~~~e~nGl~~~~--f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~-~~~~~~~~v~W 327 (1196)
.|++|+.++....+ -++...+...|.+++|| |+.||+++ ++ +|+||+..+.+- ..+. .|......+.|
T Consensus 203 tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~---tIkLWd~~~~~~---~~~~~gh~~~V~~va~ 273 (588)
T 2j04_A 203 SVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PG---YVHKIDLKNYSI---SSLKTGSLENFHIIPL 273 (588)
T ss_dssp CEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SS---EEEEEETTTTEE---EEEECSCCSCCCEEEE
T ss_pred eEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CC---eEEEEECCCCeE---EEEEcCCCceEEEEEe
Confidence 69999987655321 12432345689999999 69999997 46 899999998652 1222 22223367888
Q ss_pred --ccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCC
Q 000992 328 --HPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSK 405 (1196)
Q Consensus 328 --sp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~ 405 (1196)
+|++. .|.++..+| + ++|-+. .++|+||+
T Consensus 274 ~~s~d~~-~La~a~edG-------------------------~-klw~~d--------------------~~~~spd~-- 304 (588)
T 2j04_A 274 NHEKEST-ILLMSNKTS-------------------------Y-KVLLED--------------------ELHVTADN-- 304 (588)
T ss_dssp TTCSSCE-EEEECSSCE-------------------------E-EEEESS--------------------SEEEECCC--
T ss_pred eeCCCCC-EEEEEcCCC-------------------------C-EEEeec--------------------cEEECCCc--
Confidence 77763 244433333 2 444432 25699999
Q ss_pred CEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEec
Q 000992 406 NCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 406 ~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1196)
..+|++ |+++++|+..+.. ...+.+ ...|+.++|+|||+++|+++.
T Consensus 305 ~l~a~~--d~~v~lW~~~g~~-l~~~~~-------------~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 305 IIAPYL--EKKFKKWSTIWNE-FNNYET-------------TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SSHHHH--HHHHHHTTTTTTS-SSSSCC-------------EEEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEc--CCEEEEEECCCCc-eeeecc-------------ceEEEEEEECCCCCEEEEEEe
Confidence 777775 9999999986532 212222 125899999999999998875
No 39
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=1.8e-27 Score=280.06 Aligned_cols=292 Identities=13% Similarity=0.103 Sum_probs=215.6
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-Eeeee------------------cCcEEEEEECCCCCEEEEEe
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRV------------------EGGVRFISPSPDGDLLGVTT 135 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~------------------~~~I~~~awSPDg~~LA~~s 135 (1196)
.+.|.+++|+|||+.||+++ ++++++|+..++... .+..+ +..|.+++|||||++||+++
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 46799999999999999876 789999999876543 22211 22499999999999999999
Q ss_pred CCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE
Q 000992 136 GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL 214 (1196)
Q Consensus 136 ~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l 214 (1196)
.|++|++|+.. ...+. .+.+|...|.+++|+|||++|+ +++ .|++|+|||..+|++
T Consensus 143 ~d~~i~iwd~~~~~~~~----------------~~~~h~~~v~~~~~~p~~~~l~-s~s------~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVM----------------ILQGHEQDIYSLDYFPSGDKLV-SGS------GDRTVRIWDLRTGQC 199 (393)
T ss_dssp TTSCEEEEETTTTEEEE----------------EECCCSSCEEEEEECTTSSEEE-EEE------TTSEEEEEETTTTEE
T ss_pred CCCeEEEEECCCCcEEE----------------EEccCCCCEEEEEEcCCCCEEE-Eec------CCCcEEEEECCCCee
Confidence 99999998742 22111 1236677899999999999999 565 479999999989988
Q ss_pred EEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec----cCCCCcEEEEEEccCCCeeE
Q 000992 215 QASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN----EQIDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 215 ~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~----~~~~~~V~~laWSpDg~~LA 288 (1196)
..+.. +...+.+++|+| +|++||+++.|+ .|++|+.. |.....+... ..+...|.+++|+|||++||
T Consensus 200 ~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 200 SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp EEEEE-CSSCEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred EEEEE-cCCCcEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 87766 455689999999 999999999864 69999954 4333222111 12456899999999999999
Q ss_pred EEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCE
Q 000992 289 AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~ 368 (1196)
+++.|+ +|++|++.+... .. .. -.+. .+.
T Consensus 273 s~s~d~---~v~~wd~~~~~~-----~~-------~~-~~~~----------~~~------------------------- 301 (393)
T 1erj_A 273 SGSLDR---SVKLWNLQNANN-----KS-------DS-KTPN----------SGT------------------------- 301 (393)
T ss_dssp EEETTS---EEEEEEC--------------------------------------C-------------------------
T ss_pred EEeCCC---EEEEEECCCCCC-----cc-------cc-cCCC----------CCc-------------------------
Confidence 999999 999999876320 00 00 0000 000
Q ss_pred EEEeeccccCCCCCceeee-ecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccC
Q 000992 369 ILVTPLSLSLMPPPMYLFS-LKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAF 447 (1196)
Q Consensus 369 l~lt~l~~~~vpppm~~~~-l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~ 447 (1196)
+..+ ..|...|.+++|+|++ +.|++++.||+|++|+..+......+.| |.
T Consensus 302 ---------------~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~iwd~~~~~~~~~l~~------------h~ 352 (393)
T 1erj_A 302 ---------------CEVTYIGHKDFVLSVATTQND--EYILSGSKDRGVLFWDKKSGNPLLMLQG------------HR 352 (393)
T ss_dssp ---------------EEEEEECCSSCEEEEEECGGG--CEEEEEETTSEEEEEETTTCCEEEEEEC------------CS
T ss_pred ---------------ceEEEecccCcEEEEEECCCC--CEEEEEeCCCeEEEEECCCCeEEEEECC------------CC
Confidence 0011 1367789999999999 8999999999999999986554433333 45
Q ss_pred CcEEEEEEec------CCeEEEEEecCCCCceEEEEee
Q 000992 448 GSVIHLIWLG------SHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 448 ~~v~~l~~~~------d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
+.|..++|++ ++.+||+++.+ ..+.+|++.
T Consensus 353 ~~v~~v~~~~~~~~~p~~~~l~sgs~D--g~i~iW~~~ 388 (393)
T 1erj_A 353 NSVISVAVANGSSLGPEYNVFATGSGD--CKARIWKYK 388 (393)
T ss_dssp SCEEEEEECSSCTTCTTCEEEEEEETT--SEEEEEEEE
T ss_pred CCEEEEEecCCcCcCCCCCEEEEECCC--CcEEECccc
Confidence 6789999886 68899998876 688999873
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=1.3e-27 Score=280.97 Aligned_cols=329 Identities=11% Similarity=0.051 Sum_probs=232.3
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
.+.+++|+|+|+.|++++.||+|++||..++... .... ...+....|+|||++||+++.|++|.+|+.... ...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~ 132 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR-ADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN----LQR 132 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCS-CCEEEEEEECSSSCEEEEEETTSCEEEECTTSC----EEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEec-CCceEEEEEecCCCEEEEEECCCCEEEEeCCCc----cee
Confidence 4567899999999999999999999999875443 2222 245666789999999999999999999863311 111
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
. .+.+|...|.+++|+|||++|+ +++ .|++|+|||..+|+...++.+|.+.+.+++|+|+|+
T Consensus 133 ~-----------~~~~h~~~v~~~~~~~~~~~l~-s~s------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 194 (420)
T 3vl1_A 133 E-----------IDQAHVSEITKLKFFPSGEALI-SSS------QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR 194 (420)
T ss_dssp E-----------ETTSSSSCEEEEEECTTSSEEE-EEE------TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT
T ss_pred e-----------ecccccCccEEEEECCCCCEEE-EEe------CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC
Confidence 1 1225677899999999999999 565 468999999989999999999999999999999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCc---------------------EEEEEEccCCCeeEEEEcc
Q 000992 236 NIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDST---------------------VELLKWNCMSDLLAAVVRF 293 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~---------------------V~~laWSpDg~~LAs~~~d 293 (1196)
+|++++.|+ .|++|+. +|.....+.....+... |.+++|||||++|++++.|
T Consensus 195 ~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 268 (420)
T 3vl1_A 195 NVLSASLDG------TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 268 (420)
T ss_dssp EEEEEETTS------CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred EEEEEcCCC------cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence 999999864 6999995 45444433322112233 4445568999999999999
Q ss_pred CCcceEEEEEecCCEEEEEEEEEEecCC-cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEe
Q 000992 294 EEYDSVKICFFSNNHWYLKYEIRYLRRD-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVT 372 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~wylkq~l~~~~~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt 372 (1196)
+ +|++|++.+... ...+...... ...+.|+|++...|.+++.+|.+ ++|
T Consensus 269 g---~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i-------------------------~vw 318 (420)
T 3vl1_A 269 G---VITVHNVFSKEQ--TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML-------------------------AQW 318 (420)
T ss_dssp S---CEEEEETTTCCE--EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEE-------------------------EEE
T ss_pred C---eEEEEECCCCce--eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeE-------------------------EEE
Confidence 9 899999987542 1122111122 38899999987556666655544 344
Q ss_pred eccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccc---cCCceeeeeecccccCCc
Q 000992 373 PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL---EGTEFVVEACISETAFGS 449 (1196)
Q Consensus 373 ~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~ 449 (1196)
+++.... |+......+...|.++.| |++ +.|++++.||+|++|++..+.....+ ... .....+.+.
T Consensus 319 d~~~~~~--~~~~~~~~~~~~v~~~~~-~~~--~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~------~~~~~~~~~ 387 (420)
T 3vl1_A 319 DLRSPEC--PVGEFLINEGTPINNVYF-AAG--ALFVSSGFDTSIKLDIISDPESERPAIEFETP------TFLVSNDDA 387 (420)
T ss_dssp ETTCTTS--CSEEEEESTTSCEEEEEE-ETT--EEEEEETTTEEEEEEEECCTTCCSCEECTTSC------EEECCSSCC
T ss_pred EcCCCcC--chhhhhccCCCCceEEEe-CCC--CEEEEecCCccEEEEeccCCCCCccceeccCc------cEEccCCcc
Confidence 4432211 122122236677888855 566 79999999999999998763222111 110 011234568
Q ss_pred EEEEEEecCCe----EEEEEecCCCCceEEEEe
Q 000992 450 VIHLIWLGSHL----LLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 450 v~~l~~~~d~~----lla~~~~~~~~~~~~~~~ 478 (1196)
+..++|+|++. +++++.+ ..+.+|.+
T Consensus 388 v~~~~~s~~~~~~g~l~a~g~~---g~~~~~~~ 417 (420)
T 3vl1_A 388 VSQFCYVSDDESNGEVLEVGKN---NFCALYNL 417 (420)
T ss_dssp CCEEEEECCSSSSCEEEEEETT---TEEEEEES
T ss_pred eEEEEEccCCCCcceEEEEcCC---ceEEEEec
Confidence 99999999998 7777765 46667765
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=2.8e-27 Score=272.67 Aligned_cols=285 Identities=15% Similarity=0.116 Sum_probs=209.1
Q ss_pred ceeEEee-----ec-CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC
Q 000992 22 ILQFSAL-----DI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS 95 (1196)
Q Consensus 22 ~~~~~~~-----d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~ 95 (1196)
.+.+++| .+ ++..|++++.|+.|..|++ ..++...........+.+| .+.|.+++|+|++..|++++.
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~--~~~~~~~~~~~~~~~l~~h----~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL--YEEEQNGYFGIPHKALTGH----NHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEE--CSSCCSSBSEEEEEEECCC----SSCEEEEEECSSTTEEEEEET
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEEC--CcCCcccccccccchhccC----CCceEEEEECCCCCEEEEEcC
Confidence 6888888 55 8899999999999999998 3322100000000013444 357999999999999999999
Q ss_pred CCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 96 SGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 96 dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
||+|++||..+++. .....|.+.|.+++|||||+.||+++.|++|++|+........ .. ...+|.+
T Consensus 97 D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~--~~-----------~~~~~~~ 163 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS--SA-----------EKENHSD 163 (343)
T ss_dssp TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEE--CC-----------TTTSCSS
T ss_pred CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceee--ee-----------cccCCCc
Confidence 99999999988654 4455578999999999999999999999999998754222111 11 1114567
Q ss_pred CeEEEEEccCC----------ceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCC
Q 000992 175 FKSPISWRGDG----------KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK 244 (1196)
Q Consensus 175 ~v~~isWspDG----------~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~ 244 (1196)
.+.+++|+|++ .+|| +++ .|++|+|||. +++...++.+|.+.+.+++|+|+|++||+++.|
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~-s~~------~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~d- 234 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFA-SVG------WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKD- 234 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEE-EEE------TTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETT-
T ss_pred eeeeeeeccccccccccCCCCCEEE-EEc------CCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCC-
Confidence 78999999998 6888 565 4699999997 888888899999999999999999999999986
Q ss_pred CCCCCCeEEEEeC-CCe-eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE------
Q 000992 245 SENKCPSIVFYER-NGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR------ 316 (1196)
Q Consensus 245 ~~~~~~~V~~~e~-nGl-~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~------ 316 (1196)
..|++|+. +.. .... +. ....|.+++||||+++||++. |+ .|++|++.+........+.
T Consensus 235 -----g~v~iwd~~~~~~~~~~--~~--~~~~v~~v~~sp~~~~la~~~-d~---~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 235 -----KKLLIWDILNLTYPQRE--FD--AGSTINQIAFNPKLQWVAVGT-DQ---GVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp -----CEEEEEESSCCSSCSEE--EE--CSSCEEEEEECSSSCEEEEEE-SS---CEEEEESSSCCSCSEEECCCCSGGG
T ss_pred -----CeEEEEECCCCccccee--ec--CCCcEEEEEECCCCCEEEEEC-CC---CEEEEEeCCCCCCceEEeecCcchh
Confidence 47999996 322 1121 21 234699999999999998765 44 5999998764321101121
Q ss_pred -----EecCCcEEEEEccCCCceEEEEecCCcEEEEE
Q 000992 317 -----YLRRDGIRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 317 -----~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
.+......++|+|++.. |+.++.||.+..++
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~~-l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGKK-LFAGFTDGVIRTFS 337 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSCC-EEEEETTSEEEEEE
T ss_pred hhhhcCCCCceEEEEECCCCCe-EEEecCCceEEEEE
Confidence 11112378999999876 77888888776544
No 42
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.96 E-value=4.4e-27 Score=266.55 Aligned_cols=272 Identities=11% Similarity=0.066 Sum_probs=211.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.|++..|++++.|+.|..||. .++.. +.+ +..+ ...|.+++|+|+++.|++|+.||+|++
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~--~~~~~---~~~----~~~~----~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNY--ETQVE---VRS----IQVT----ETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEET--TTTEE---EEE----EECC----SSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEEC--CCCce---eEE----eecc----CCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 7999999999999999999999999999 44432 111 2222 357999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCc-eeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD-LLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||..+++. ..+..|.+.|.+++|||||++||+++.|++|++|+..-. ... ..+.+|...|.++
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~---------------~~~~~h~~~v~~v 146 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE---------------QTFEGHEHFVMCV 146 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE---------------EEECCCCSCEEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh---------------hhhcccCCcEEEE
Confidence 99988654 455567899999999999999999999999999873211 110 1133667789999
Q ss_pred EEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcC--CCCeEEEEecCCCCCCCCeEEEE
Q 000992 180 SWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMP--SGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 180 sWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsP--dG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
+|+| |+.+|| +++ .|++|+|||..++...... .++...+..++|+| +|++||+++.| ..|++|
T Consensus 147 ~~~p~~~~~l~-sgs------~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D------~~i~iW 213 (304)
T 2ynn_A 147 AFNPKDPSTFA-SGC------LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD------LTIKIW 213 (304)
T ss_dssp EECTTCTTEEE-EEE------TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT------SEEEEE
T ss_pred EECCCCCCEEE-EEe------CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC------CeEEEE
Confidence 9999 688999 565 4799999998776654444 34567789999987 78899999986 479999
Q ss_pred eCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 256 ERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 256 e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
+.. |.... ++.. +...|..++|+|++++||+++.|+ +|++|+..++. +.+.+..+......+.|+|++...
T Consensus 214 d~~~~~~~~--~~~~-h~~~v~~~~~~p~~~~l~s~s~Dg---~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 285 (304)
T 2ynn_A 214 DYQTKSCVA--TLEG-HMSNVSFAVFHPTLPIIISGSEDG---TLKIWNSSTYK--VEKTLNVGLERSWCIATHPTGRKN 285 (304)
T ss_dssp ETTTTEEEE--EEEC-CSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTCC--EEEEECCSSSSEEEEEECTTCGGG
T ss_pred eCCCCccce--eeCC-CCCCEEEEEECCCCCEEEEEcCCC---eEEEEECCCCc--eeeeccCCCccEEEEEECCCCCce
Confidence 954 43333 3343 356899999999999999999999 99999998865 344554443344889999998754
Q ss_pred -EEEEecCC
Q 000992 335 -LICWTLDG 342 (1196)
Q Consensus 335 -L~~~~~~g 342 (1196)
+..+..+|
T Consensus 286 ~~asg~~~g 294 (304)
T 2ynn_A 286 YIASGFDNG 294 (304)
T ss_dssp CEEEEETTE
T ss_pred EEEEecCCc
Confidence 56655444
No 43
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=1.1e-26 Score=265.44 Aligned_cols=277 Identities=15% Similarity=0.084 Sum_probs=214.4
Q ss_pred ceeEEeeecCC-CEEEEEeCCCcEEEEeccccccccc--ceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc
Q 000992 22 ILQFSALDIEQ-NRLFFASSANNIYSAQLSSFQNERA--SIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~-~~l~~~s~~~~i~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~ 98 (1196)
.+.+++|.+++ +.|++++.|+.|+.|++ ...... ..+.+ +.+| ...|.+++|+|||+.|++++.||+
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~--~~~~~~~~~~~~~----~~~h----~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDKTLISWKL--TGDDQKFGVPVRS----FKGH----SHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEE--EEETTEEEEEEEE----EECC----SSCEEEEEECTTSSEEEEEETTSE
T ss_pred eEEEEEccCCCccEEEEecCCccEEEecC--CCCCccccccceE----EeCC----cccEEEEEECCCCCEEEEEeCCCE
Confidence 78999999865 78999999999999998 332211 11111 3444 358999999999999999999999
Q ss_pred EEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 99 LLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 99 I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
|++||..+++. ..+..|.+.|.+++|+|||++|++++.|++|++|+.....+.. +.+|.+.+.
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~----------------~~~h~~~v~ 152 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT----------------LLGHNDWVS 152 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEE----------------ECCCSSCEE
T ss_pred EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE----------------EeccCCcEE
Confidence 99999998765 3455578999999999999999999999999999754333221 225667789
Q ss_pred EEEEccC------CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 178 PISWRGD------GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 178 ~isWspD------G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
+++|+|+ +.+|+ +++ .|++|++||..++++...+.+|.+.+.+++|+|+|++||+++.| ..
T Consensus 153 ~~~~~~~~~~~~~~~~l~-s~~------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d------g~ 219 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTII-SAG------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD------GE 219 (319)
T ss_dssp EEEECCC------CCEEE-EEE------TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETT------CE
T ss_pred EEEEccCCCCCCCccEEE-EEe------CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCC------Ce
Confidence 9999995 45788 455 47899999998899999999999999999999999999999986 47
Q ss_pred EEEEeCCCe-eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec-------CC-c
Q 000992 252 IVFYERNGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR-------RD-G 322 (1196)
Q Consensus 252 V~~~e~nGl-~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~-------~~-~ 322 (1196)
|++|+.... ... .+.. ...|.+++|||||.+||++..++ |++|+..... +...+.... .. .
T Consensus 220 i~iwd~~~~~~~~--~~~~--~~~v~~~~~sp~~~~la~~~~~~----i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~v 289 (319)
T 3frx_A 220 IMLWNLAAKKAMY--TLSA--QDEVFSLAFSPNRYWLAAATATG----IKVFSLDPQY--LVDDLRPEFAGYSKAAEPHA 289 (319)
T ss_dssp EEEEETTTTEEEE--EEEC--CSCEEEEEECSSSSEEEEEETTE----EEEEEETTEE--EEEEECCCCTTCCGGGCCCE
T ss_pred EEEEECCCCcEEE--EecC--CCcEEEEEEcCCCCEEEEEcCCC----cEEEEeCcCe--eeeccCccccccccCcCcce
Confidence 999996533 222 2332 35799999999999999998775 9999998643 223332110 11 2
Q ss_pred EEEEEccCCCceEEEEecCCcEEEEE
Q 000992 323 IRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
..+.|+|++.. |..+..||.+.+++
T Consensus 290 ~~~~~spdg~~-l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 290 VSLAWSADGQT-LFAGYTDNVIRVWQ 314 (319)
T ss_dssp EEEEECTTSSE-EEEEETTSCEEEEE
T ss_pred eEEEECCCCCE-EEEeecCceEEEEE
Confidence 68999999875 77888888876543
No 44
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=5.1e-27 Score=272.45 Aligned_cols=275 Identities=13% Similarity=0.064 Sum_probs=215.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.|+.|..||. .+.+.... +.. +...|.+++|+|+|..|++++.||+|++
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~--~~~~~~~~-------~~~----~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDS--FTTNKEHA-------VTM----PCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEET--TTCCEEEE-------EEC----SSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEEC--CCCCcceE-------Eec----CCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 7899999999999999999999999998 44432111 111 2457999999999999999999999999
Q ss_pred EECCCC-------eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCC
Q 000992 102 HSVDGN-------ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 102 w~~~~~-------~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
|+.... ....+..|.+.|.+++|+||++.|++++.|++|++|+. ....+.. |.+|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~----------------~~~h~ 196 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS----------------FHGHG 196 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE----------------EECCS
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE----------------EcCCC
Confidence 998532 23344557899999999999999999999999999873 2332222 23566
Q ss_pred CCeEEEEEcc--CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 174 SFKSPISWRG--DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 174 ~~v~~isWsp--DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
..+.+++|+| +|++|+ +++ .|++|++||..+|++..++++|.+.+.+++|+|+|++||+++.|. .
T Consensus 197 ~~v~~~~~~~~~~g~~l~-sgs------~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~------~ 263 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFV-SGG------CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDA------T 263 (354)
T ss_dssp SCEEEEEECCCSSCCEEE-EEE------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS------C
T ss_pred CCeEEEEEEeCCCCCEEE-EEe------CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCC------e
Confidence 7788999977 688999 565 468999999989999999999999999999999999999999874 6
Q ss_pred EEEEeCCCe-eEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEcc
Q 000992 252 IVFYERNGL-ERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 252 V~~~e~nGl-~~~~f~l~~-~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp 329 (1196)
|++|+.... .... +.. .....+.+++|||||++||+++.|+ +|++|++.+..- ...+..|......+.|+|
T Consensus 264 v~lwd~~~~~~~~~--~~~~~~~~~~~~~~~s~~g~~l~~g~~d~---~i~vwd~~~~~~--~~~l~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 264 CRLYDLRADREVAI--YSKESIIFGASSVDFSLSGRLLFAGYNDY---TINVWDVLKGSR--VSILFGHENRVSTLRVSP 336 (354)
T ss_dssp EEEEETTTTEEEEE--ECCTTCCSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCSE--EEEECCCSSCEEEEEECT
T ss_pred EEEEECCCCcEEEE--EcCCCcccceeEEEEeCCCCEEEEEECCC---cEEEEECCCCce--EEEEECCCCcEEEEEECC
Confidence 999996432 2221 221 1224689999999999999999999 999999876542 234444444448899999
Q ss_pred CCCceEEEEecCCcEEE
Q 000992 330 TKPLQLICWTLDGQITT 346 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~ 346 (1196)
++.. |+.++.||.+.+
T Consensus 337 dg~~-l~sgs~D~~v~v 352 (354)
T 2pbi_B 337 DGTA-FCSGSWDHTLRV 352 (354)
T ss_dssp TSSC-EEEEETTSEEEE
T ss_pred CCCE-EEEEcCCCCEEe
Confidence 9876 778887887653
No 45
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-28 Score=300.05 Aligned_cols=302 Identities=9% Similarity=-0.047 Sum_probs=200.6
Q ss_pred EEEEECCCcEEEEECCCCeE-----EEeeeecCcEEEEEECCC------CCEEEEEeCCceEEEEeccCce-eeeeeccc
Q 000992 90 LIVGTSSGLLLLHSVDGNAT-----EVVGRVEGGVRFISPSPD------GDLLGVTTGFGQILVMTHDWDL-LYENPLEE 157 (1196)
Q Consensus 90 La~as~dG~I~lw~~~~~~~-----e~vg~~~~~I~~~awSPD------g~~LA~~s~d~tV~l~~~~~d~-~~~~~l~~ 157 (1196)
|++++.||+|+||+.+++++ ..+.+|.+.|++++|||+ |.+||+++.||+|++|+..-.. ........
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 34456789999999987643 234556788999999997 6899999999999998743111 00000000
Q ss_pred ccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc-EEEEeccCCCceeEE--EEcCCC
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGAVL--EWMPSG 234 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~e~~~~~v~sl--awsPdG 234 (1196)
. .+ ...+.+|...+.+++|+|++ +|| +++ .|++|++||..++. ...++.+|.+.|.+| +|+|+|
T Consensus 256 ~---~p--~~~l~~h~~~v~sv~~s~~~-~la-sgs------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g 322 (524)
T 2j04_B 256 E---KP--SLTLSLADSLITTFDFLSPT-TVV-CGF------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE 322 (524)
T ss_dssp C---SC--SEEECCTTTCEEEEEESSSS-EEE-EEE------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS
T ss_pred c---Cc--eEEEEcCCCCEEEEEecCCC-eEE-EEe------CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC
Confidence 0 00 01244677889999999976 688 565 47999999997674 445678899999999 689999
Q ss_pred -CeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 235 -ANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 235 -~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
++|||++.|+ +|++|+. ++.....+.-+. ....|.+|+|||||+.||+++.|+ +|+||++.+... .
T Consensus 323 ~~~laS~S~D~------tvklWD~~~~~~~~~~~~~~-~~~~v~~v~fsp~~~~l~s~~~d~---tv~lwd~~~~~~--~ 390 (524)
T 2j04_B 323 DTVVSTVAVDG------YFYIFNPKDIATTKTTVSRF-RGSNLVPVVYCPQIYSYIYSDGAS---SLRAVPSRAAFA--V 390 (524)
T ss_dssp CCEEEEEETTS------EEEEECGGGHHHHCEEEEEC-SCCSCCCEEEETTTTEEEEECSSS---EEEEEETTCTTC--C
T ss_pred CeEEEEeccCC------eEEEEECCCCCccccccccc-ccCcccceEeCCCcCeEEEeCCCC---cEEEEECccccc--c
Confidence 9999999974 7999995 332211121111 113488999999999999999998 999999887532 2
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEE-------------------EEEeeecCCCeeEEEEcCCEEEEee
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYN-------------------FIWTTAVMENSTALVIDGSKILVTP 373 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~-------------------~~~~~~~~d~~~v~viDg~~l~lt~ 373 (1196)
..+..|...+..++|||+++. |..++.||.+.+++ ++|.++++. ||+.+.++.
T Consensus 391 ~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp-------~g~~~~~~~ 462 (524)
T 2j04_B 391 HPLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSI-------KDDKYRIDS 462 (524)
T ss_dssp EEEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCS-------SSCEEEECC
T ss_pred eeeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCC-------CCCeEEccC
Confidence 345555445589999999875 77788888876421 234443322 344444433
Q ss_pred -ccccCC-CCCceeeee-cCCCCEEEEEEecCCC-CCEEEEEECCCcEEEEeCCC
Q 000992 374 -LSLSLM-PPPMYLFSL-KFPTAVTEMAFYSKSS-KNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 374 -l~~~~v-pppm~~~~l-~~~~~V~~Vafspdg~-~~~lAs~~~dg~v~lw~~~~ 424 (1196)
+..+.. ..+.+..++ +|..+|++|+|||++. +..+|+++.||+|+||++..
T Consensus 463 ~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 463 SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 111110 112233444 4889999999999962 25999999999999999874
No 46
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=4e-29 Score=297.92 Aligned_cols=295 Identities=10% Similarity=0.060 Sum_probs=208.3
Q ss_pred CCCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeE---EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEeccCce
Q 000992 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDGNAT---EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 75 ~~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~~~~---e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
...|++|+|+| ++..||+|+.||+|+|||..++.. .....|.+.|++++||| ||++|++++.|++|++|+.....
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 198 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence 35799999999 567999999999999999986532 12224689999999999 79999999999999999754333
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
....... . .+...+.+++|+|||++|| +++ .+++|++||. +|+...++.+|.+.|.+++
T Consensus 199 ~~~~~~~--~-----------~~~~~~~~~~~~~~~~~l~-~g~------~dg~i~~wd~-~~~~~~~~~~h~~~v~~v~ 257 (435)
T 4e54_B 199 LRVFASS--D-----------TINIWFCSLDVSASSRMVV-TGD------NVGNVILLNM-DGKELWNLRMHKKKVTHVA 257 (435)
T ss_dssp EEEEECC--S-----------SCSCCCCCEEEETTTTEEE-EEC------SSSBEEEEES-SSCBCCCSBCCSSCEEEEE
T ss_pred eeEEecc--C-----------CCCccEEEEEECCCCCEEE-EEe------CCCcEeeecc-CcceeEEEecccceEEeee
Confidence 2211111 0 1223567899999999999 675 4689999999 7888888889999999999
Q ss_pred EcCCCC-eEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 230 WMPSGA-NIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 230 wsPdG~-~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
|+|+|+ +||+++.| ..|++|+.. +.....+.....+...|.+|+|||||++||+++.|+ +|+||++.++
T Consensus 258 ~~p~~~~~~~s~s~d------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~---~i~iwd~~~~ 328 (435)
T 4e54_B 258 LNPCCDWFLATASVD------QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS---EIRVYSASQW 328 (435)
T ss_dssp ECTTCSSEEEEEETT------SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS---CEEEEESSSS
T ss_pred ecCCCceEEEEecCc------ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC---EEEEEECCCC
Confidence 999987 78888886 469999953 222222211123456899999999999999999999 9999999875
Q ss_pred EEEEEEEEEEecC------CcEEEEEccCCCceEEEEe-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCC
Q 000992 308 HWYLKYEIRYLRR------DGIRFMWHPTKPLQLICWT-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 380 (1196)
Q Consensus 308 ~wylkq~l~~~~~------~~~~v~Wsp~~~~~L~~~~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vp 380 (1196)
.. ...+..+.. ......|+|++.. +.+.. .++.+. .+...+++.|++|+.....
T Consensus 329 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~--------------~~~~~~~~~i~iwd~~~g~-- 389 (435)
T 4e54_B 329 DC--PLGLIPHPHRHFQHLTPIKAAWHPRYNL-IVVGRYPDPNFK--------------SCTPYELRTIDVFDGNSGK-- 389 (435)
T ss_dssp SS--EEEECCCCCCCCSSSCCCBCEECSSSSC-EEEECCCCTTSC--------------CSSTTCCCCEEEECSSSCC--
T ss_pred cc--ceEEecccccccccceeEEEEEcCCCCE-EEEEEcCCCCeE--------------EEEecCCCEEEEEECCCCc--
Confidence 42 122222211 1145678988765 33332 222211 1111244566676654321
Q ss_pred CCceeeee--cCCCCEEEE-EEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 381 PPMYLFSL--KFPTAVTEM-AFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 381 ppm~~~~l--~~~~~V~~V-afspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
...++ .|...|.++ +|||+| ++||++ .|++|+||++.+
T Consensus 390 ---~~~~l~~~~~~~v~s~~~fspdg--~~lasg-~d~~i~iW~~~~ 430 (435)
T 4e54_B 390 ---MMCQLYDPESSGISSLNEFNPMG--DTLASA-MGYHILIWSQQE 430 (435)
T ss_dssp ---EEEEECCSSCCCCCCEEEECTTS--SCEEEE-CSSEEEECCCC-
T ss_pred ---EEEEEeCCCCCcEEEEEEECCCC--CEEEEE-cCCcEEEEECCc
Confidence 11222 367778887 799999 899987 488999999875
No 47
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=2e-27 Score=277.28 Aligned_cols=291 Identities=12% Similarity=0.037 Sum_probs=200.8
Q ss_pred CEEEEEEccCCCEEEEEECCC-------cEEEEECCCCe------EE-----EeeeecCcEEEEEECCCCCEEEEEe---
Q 000992 77 SITAFDYLMEKEALIVGTSSG-------LLLLHSVDGNA------TE-----VVGRVEGGVRFISPSPDGDLLGVTT--- 135 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG-------~I~lw~~~~~~------~e-----~vg~~~~~I~~~awSPDg~~LA~~s--- 135 (1196)
.|.+++|+|||+.||+|+.+. .|++|+.+.+. +. .+..+++.|.+++| |+..++++.
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~~ 93 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNEN 93 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECCC
Confidence 699999999999999997644 49999986531 11 12234566777655 556777664
Q ss_pred --------CCceEEEEeccCceeeeeecccccCcccccc---CccccCCCCeEEEEEccCCceEEEeeccccccCCCCEE
Q 000992 136 --------GFGQILVMTHDWDLLYENPLEELAEGFDVHE---PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRL 204 (1196)
Q Consensus 136 --------~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~---tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~i 204 (1196)
.|+++++|...-..- +.+.+.. .....+++.+..++|||||+++| +++. ..|++|
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la-~as~----~~d~~i 159 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVND---------QLEFLTSVDFDASTNADDYTKLVYISREGTVAA-IASS----KVPAIM 159 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTT---------EEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE-EEES----CSSCEE
T ss_pred ccEEEEecCCCcEEEEEecCCCc---------eEEEeeeeceeecCCcccCEEEEEEcCCCCEEE-EEEC----CCCCEE
Confidence 355676664211000 0001110 11224556688999999999998 5542 257999
Q ss_pred EEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCC
Q 000992 205 KVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS 284 (1196)
Q Consensus 205 rVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg 284 (1196)
||||..++++....+ +.+.|.+++|||||++||+++.+ ..+++|..+|........ ..+...|.+++|+|||
T Consensus 160 ~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~------~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 160 RIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS------SLEVISTVTGSCIARKTD-FDKNWSLSKINFIADD 231 (365)
T ss_dssp EEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS------CEEEEETTTCCEEEEECC-CCTTEEEEEEEEEETT
T ss_pred EEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce------eEEEEEeccCcceeeeec-CCCCCCEEEEEEcCCC
Confidence 999999999988876 66789999999999999999864 345556666654332222 2235679999999999
Q ss_pred CeeEEEEccCCc-ceEEEEEecCCEEEEEEEEEEec--CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeE
Q 000992 285 DLLAAVVRFEEY-DSVKICFFSNNHWYLKYEIRYLR--RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTA 361 (1196)
Q Consensus 285 ~~LAs~~~d~~~-~~V~lW~~~n~~wylkq~l~~~~--~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v 361 (1196)
+.|++++.++.. .++++|+.....+...+...+.. ....++.|+|++.. |++++.||.+. +|++.
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~-lasgs~D~~V~----iwd~~------- 299 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL-AVLASNDNSIA----LVKLK------- 299 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE-EEEEETTSCEE----EEETT-------
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc-eEEEcCCCEEE----EEECC-------
Confidence 999999988643 26899998877654433333332 23488999999865 77777666554 23321
Q ss_pred EEEcCCEEEEeeccccCCCCCceeeee--cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 362 LVIDGSKILVTPLSLSLMPPPMYLFSL--KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 362 ~viDg~~l~lt~l~~~~vpppm~~~~l--~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
+|+. .+++ .|..+|++|+||||| ++||+++.|++|+||+++.
T Consensus 300 ---~~~~----------------~~~~~~gH~~~V~~v~fSpdg--~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 300 ---DLSM----------------SKIFKQAHSFAITEVTISPDS--TYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ---TTEE----------------EEEETTSSSSCEEEEEECTTS--CEEEEEETTSEEEEEECCT
T ss_pred ---CCcE----------------EEEecCcccCCEEEEEECCCC--CEEEEEeCCCeEEEEEcCC
Confidence 1111 1222 388999999999999 9999999999999999964
No 48
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=1.6e-27 Score=277.49 Aligned_cols=289 Identities=13% Similarity=0.087 Sum_probs=214.6
Q ss_pred CCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeEE-Eee--eecCcEEEEEECC-CCCEEEEEeCCceEEEEeccCce
Q 000992 75 GDSITAFDYLMEK-EALIVGTSSGLLLLHSVDGNATE-VVG--RVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 75 ~~~v~~v~~spd~-~~La~as~dG~I~lw~~~~~~~e-~vg--~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
.+.|.+++|+|++ +.|++++.||+|++||..++... ... .|.+.|.+++||| |+++|++++.|++|.+|+.....
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV 152 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 4689999999999 99999999999999999876543 222 3689999999999 78999999999999999755333
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
+.....+ .++...+.+++|+|||++|+ +++ .+++|++||. +|+...++..|.+.+.+++
T Consensus 153 ~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~-~~~------~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 153 IQVFAKT-------------DSWDYWYCCVDVSVSRQMLA-TGD------STGRLLLLGL-DGHEIFKEKLHKAKVTHAE 211 (383)
T ss_dssp EEEEECC-------------CCSSCCEEEEEEETTTTEEE-EEE------TTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred eEEEecc-------------CCCCCCeEEEEECCCCCEEE-EEC------CCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence 2222111 13446789999999999999 565 4689999999 8999999999999999999
Q ss_pred EcCCCC-eEEEEecCCCCCCCCeEEEEeCC-----CeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEE
Q 000992 230 WMPSGA-NIAAVYDRKSENKCPSIVFYERN-----GLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 230 wsPdG~-~IAs~s~d~~~~~~~~V~~~e~n-----Gl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW 302 (1196)
|+|+|+ +||+++.| ..|++|+.. +..... + .+...|.+++|+| ||++||+++.|+ +|++|
T Consensus 212 ~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~--~--~~~~~v~~~~~s~~~~~~l~~~~~d~---~i~iw 278 (383)
T 3ei3_B 212 FNPRCDWLMATSSVD------ATVKLWDLRNIKDKNSYIAE--M--PHEKPVNAAYFNPTDSTKLLTTDQRN---EIRVY 278 (383)
T ss_dssp ECSSCTTEEEEEETT------SEEEEEEGGGCCSTTCEEEE--E--ECSSCEEEEEECTTTSCEEEEEESSS---EEEEE
T ss_pred ECCCCCCEEEEEeCC------CEEEEEeCCCCCcccceEEE--e--cCCCceEEEEEcCCCCCEEEEEcCCC---cEEEE
Confidence 999999 99999986 479999964 222221 2 2456899999999 999999999999 99999
Q ss_pred EecCCEEEEEEEEEEec------CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccc
Q 000992 303 FFSNNHWYLKYEIRYLR------RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL 376 (1196)
Q Consensus 303 ~~~n~~wylkq~l~~~~------~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~ 376 (1196)
++.+... .+.+..+. .......|+|++.......+.+|.+ +..+++.|++|++..
T Consensus 279 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-----------------s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 279 SSYDWSK--PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-----------------LLNDKRTIDIYDANS 339 (383)
T ss_dssp ETTBTTS--CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-----------------CTTCCCCEEEEETTT
T ss_pred ECCCCcc--ccccccccccccccccceEEeccCCCCceEEEecCCccc-----------------ccCCCCeEEEEecCC
Confidence 9886542 22333322 1123457888776533333333321 111334566776643
Q ss_pred cCCCCCceeeeec---CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 377 SLMPPPMYLFSLK---FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 377 ~~vpppm~~~~l~---~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.. ...++. +...+..++|+|++ +.||+++ ||+|++|++++
T Consensus 340 ~~-----~~~~l~~~~~~~~~~~~~~s~~g--~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 340 GG-----LVHQLRDPNAAGIISLNKFSPTG--DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CC-----EEEEECBTTBCSCCCEEEECTTS--SEEEEEE-TTEEEEEECC-
T ss_pred Cc-----eeeeecCCCCCceEEEEEEecCc--cEEEEec-CCcEEEEecCC
Confidence 21 223343 45667788999999 8999996 99999999874
No 49
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=4.7e-26 Score=258.67 Aligned_cols=293 Identities=11% Similarity=0.091 Sum_probs=208.0
Q ss_pred cccccCCCCCCEEEEEEccC-CCEEEEEECCCcEEEEECCCCe------EEEeeeecCcEEEEEECCCCCEEEEEeCCce
Q 000992 67 IEHIDLEPGDSITAFDYLME-KEALIVGTSSGLLLLHSVDGNA------TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ 139 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd-~~~La~as~dG~I~lw~~~~~~------~e~vg~~~~~I~~~awSPDg~~LA~~s~d~t 139 (1196)
|++| .+.|++|+|+|+ ++.||+|+.||+|++||+.+.+ ...+..|.+.|.+++|||||++|++++.|+.
T Consensus 34 L~GH----~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 34 LKGH----NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp ECCC----SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ECCc----cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 6677 468999999998 6899999999999999987532 2344557899999999999999999999999
Q ss_pred EEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE-EEe
Q 000992 140 ILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ-ASS 218 (1196)
Q Consensus 140 V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~-~~~ 218 (1196)
|++|............ .+...+....|++++.+|+ +++ .|+.+++||...+... ...
T Consensus 110 i~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~-s~s------~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFV---------------GHTKDVLSVAFSSDNRQIV-SGS------RDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp EEEEETTTTEEEEEEE---------------CCSSCEEEEEECTTSSCEE-EEE------TTSCEEEECTTSCEEEEECS
T ss_pred ceEEeecccceeeeec---------------CCCCceeEEEEeecCccce-eec------CCCeEEEEEeCCCceEEEEe
Confidence 9998744322211111 2234668899999999999 565 4689999998443332 234
Q ss_pred ccCCCceeEEEEcCCC--CeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC
Q 000992 219 ELKAFMGAVLEWMPSG--ANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE 295 (1196)
Q Consensus 219 e~~~~~v~slawsPdG--~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~ 295 (1196)
.+|...+..++|+|++ .++++++.|. .|++|+... .... .+.. +...|.+|+|+|||++||+++.|+
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~------~i~i~d~~~~~~~~--~~~~-h~~~v~~~~~s~~~~~l~s~s~Dg- 237 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDK------LVKVWNLANCKLKT--NHIG-HTGYLNTVTVSPDGSLCASGGKDG- 237 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTTEEEE--EECC-CSSCEEEEEECTTSSEEEEEETTC-
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCC------EEEEEECCCCceee--EecC-CCCcEEEEEECCCCCEEEEEeCCC-
Confidence 6688889999999986 4678888764 699999643 3222 2333 456899999999999999999999
Q ss_pred cceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeecc
Q 000992 296 YDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLS 375 (1196)
Q Consensus 296 ~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~ 375 (1196)
+|++|++.+... ...+.. ......+.|+|++. +.+...+|.+. .|+.. +.. .+..+.
T Consensus 238 --~i~iwd~~~~~~--~~~~~~-~~~v~~~~~~~~~~--~~~~~~d~~i~----iwd~~-----------~~~-~~~~~~ 294 (340)
T 4aow_A 238 --QAMLWDLNEGKH--LYTLDG-GDIINALCFSPNRY--WLCAATGPSIK----IWDLE-----------GKI-IVDELK 294 (340)
T ss_dssp --EEEEEETTTTEE--EEEEEC-SSCEEEEEECSSSS--EEEEEETTEEE----EEETT-----------TTE-EEEEEC
T ss_pred --eEEEEEeccCce--eeeecC-CceEEeeecCCCCc--eeeccCCCEEE----EEECC-----------CCe-EEEecc
Confidence 999999987642 122221 12237788998764 34444456554 33321 111 111111
Q ss_pred ccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 376 LSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 376 ~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
. ++.......|+..|++|+|+||| +.||+++.||+|++|++.+
T Consensus 295 ~----~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 295 Q----EVISTSSKAEPPQCTSLAWSADG--QTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp C----C-------CCCCCEEEEEECTTS--SEEEEEETTSCEEEEEEEC
T ss_pred c----cceeeeccCCCCCEEEEEECCCC--CEEEEEeCCCEEEEEeCCC
Confidence 1 11111122478899999999999 8999999999999999875
No 50
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-28 Score=286.52 Aligned_cols=341 Identities=12% Similarity=0.099 Sum_probs=232.9
Q ss_pred CEEEEEEccCCC-EEEEE----------ECCCcEEEEECCCCe----EEEeeeecCcEEEEEECCCCCEEEEEeCCceEE
Q 000992 77 SITAFDYLMEKE-ALIVG----------TSSGLLLLHSVDGNA----TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQIL 141 (1196)
Q Consensus 77 ~v~~v~~spd~~-~La~a----------s~dG~I~lw~~~~~~----~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~ 141 (1196)
.|.+++|+|||+ .|+++ +.||+|++||..++. +...+ |...|.+++|||||++||+++.|++|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ-VDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC-CSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe-cCCceEEEEECCCCCeEEEEccCCeEE
Confidence 578899999997 89999 899999999998753 22344 578999999999999999999999999
Q ss_pred EEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCc------E
Q 000992 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGT------L 214 (1196)
Q Consensus 142 l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~------l 214 (1196)
+|+..-........ ..+.+|...|.+++|+|| +++|+ +++ .+++|+|||..+++ .
T Consensus 93 vw~~~~~~~~~~~~-----------~~~~~h~~~v~~~~~~~~~~~~l~-s~~------~dg~v~iwd~~~~~~~~~~~~ 154 (416)
T 2pm9_A 93 LYSTNEANNAINSM-----------ARFSNHSSSVKTVKFNAKQDNVLA-SGG------NNGEIFIWDMNKCTESPSNYT 154 (416)
T ss_dssp EECCSSTTSCCCEE-----------EECCCSSSCCCEEEECSSSTTBEE-EEC------SSSCEEBCBTTTTSSCTTTCC
T ss_pred Eeecccccccccch-----------hhccCCccceEEEEEcCCCCCEEE-EEc------CCCeEEEEECCCCcccccccc
Confidence 98643200000011 123356778899999999 88998 565 46899999997776 2
Q ss_pred EE---EeccCCCceeEEEEcCC-CCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCC-----CCcEEEEEEccCC
Q 000992 215 QA---SSELKAFMGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQI-----DSTVELLKWNCMS 284 (1196)
Q Consensus 215 ~~---~~e~~~~~v~slawsPd-G~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~-----~~~V~~laWSpDg 284 (1196)
.. ....|.+.+.+++|+|+ +++|++++.++ .|++|+.. +..... +..+. ...|.+++|+|+|
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~iwd~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN------FASIWDLKAKKEVIH--LSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS------CEEEEETTTTEEEEE--ECCCCCSSCCCCCEEEEEECSSC
T ss_pred ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC------CEEEEECCCCCcceE--EeccccccccCCceEEEEECCCC
Confidence 22 23567888999999999 78999998864 69999964 333332 33221 4679999999998
Q ss_pred -CeeEEEEccCCcceEEEEEecCCEEEEEEEEE-EecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEE
Q 000992 285 -DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR-YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTAL 362 (1196)
Q Consensus 285 -~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~-~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~ 362 (1196)
.+|++++.|+...+|++|++.+... ....+. .+......+.|+|.++..|.+++.+|.+. .|+
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~----~wd---------- 291 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVL----LWN---------- 291 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEE----EEC----------
T ss_pred CCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEE----Eee----------
Confidence 6899998885333699999886421 112222 23233488999994444466666666543 232
Q ss_pred EEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccC-------C
Q 000992 363 VIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEG-------T 434 (1196)
Q Consensus 363 viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g-------~ 434 (1196)
++.. ....++ .|...|.+++|+|++. +.|++++.||+|++|++.+......... .
T Consensus 292 -----------~~~~-----~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 354 (416)
T 2pm9_A 292 -----------PESA-----EQLSQFPARGNWCFKTKFAPEAP-DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQES 354 (416)
T ss_dssp -----------SSSC-----CEEEEEECSSSCCCCEEECTTCT-TEEEECCSSSEEEEEESCCCCCSSCC----------
T ss_pred -----------CCCC-----ccceeecCCCCceEEEEECCCCC-CEEEEEecCCcEEEEEccCCCCCcccccccccccCC
Confidence 2211 111223 3678899999999973 6899999999999999976433211110 0
Q ss_pred ceeeee----------------ecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 435 EFVVEA----------------CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 435 ~~~~~~----------------~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
...... ..+..+...+..++|+|+|++||+++.+ ..+.+|.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d--~~v~~w~~ 412 (416)
T 2pm9_A 355 ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDG--KGVSITNP 412 (416)
T ss_dssp ------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTS--SCBCCBCC
T ss_pred cccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCC--CeEEEEEe
Confidence 000000 0001123456688999999999988754 56777766
No 51
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=2.3e-26 Score=290.78 Aligned_cols=246 Identities=13% Similarity=0.104 Sum_probs=191.9
Q ss_pred ceeEEeeecCC-CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQ-NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~-~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.+++|.+++ +.|+++|.|+.|..|++ .......... ...+.+| .+.|.+++|+|||+.|++++.||+|+
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~--~~~~~~~~~~--~~~~~~h----~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDKSIILWKL--TKDDKAYGVA--QRRLTGH----SHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTSEEEEEEC--CCSTTCSCEE--EEEEECC----SSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eeEEEEecCCCCCEEEEEeCCCcEEEEEc--cCCCcccccc--cceecCC----CCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 78899999875 78999999999999998 3322111100 0114445 35899999999999999999999999
Q ss_pred EEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 101 LHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 101 lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
+||..++.. .....|.+.|.+++|||||+.|++++.|++|++|+.......... ....+|.+.+.++
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~------------~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS------------EGGEGHRDWVSCV 523 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC------------SSTTSCSSCEEEE
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec------------cCCCCCCCcEEEE
Confidence 999988764 345557899999999999999999999999999874322211111 0112567789999
Q ss_pred EEccCC--ceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 180 SWRGDG--KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 180 sWspDG--~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+|+|++ .+|+ +++ .|++|+|||..++++..++.+|.+.+.+++|+|+|++||+++.|+ .|++|+.
T Consensus 524 ~~~~~~~~~~l~-s~s------~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg------~i~iwd~ 590 (694)
T 3dm0_A 524 RFSPNTLQPTIV-SAS------WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG------VVLLWDL 590 (694)
T ss_dssp EECSCSSSCEEE-EEE------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS------BCEEEET
T ss_pred EEeCCCCcceEE-EEe------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC------eEEEEEC
Confidence 999998 4677 455 478999999989999999999999999999999999999999864 6999995
Q ss_pred -CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 258 -NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 258 -nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+|.... .+. ....|.+++||||+.+|+++..+ .|++|++.+..
T Consensus 591 ~~~~~~~--~~~--~~~~v~~~~~sp~~~~l~~~~~~----~i~iwd~~~~~ 634 (694)
T 3dm0_A 591 AEGKKLY--SLE--ANSVIHALCFSPNRYWLCAATEH----GIKIWDLESKS 634 (694)
T ss_dssp TTTEEEE--CCB--CSSCEEEEEECSSSSEEEEEETT----EEEEEETTTTE
T ss_pred CCCceEE--Eec--CCCcEEEEEEcCCCcEEEEEcCC----CEEEEECCCCC
Confidence 443322 222 34579999999999999988765 49999998753
No 52
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=2.3e-26 Score=264.71 Aligned_cols=313 Identities=10% Similarity=0.005 Sum_probs=214.7
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe---EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-Ccee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLL 150 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~---~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~ 150 (1196)
.+.|.+++|+||++.|++++.||+|++||..+++ +..+..|.+.|.+++|+|||++||+++.|++|++|+.. .+..
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 87 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 87 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence 3579999999999999999999999999999874 44555678999999999999999999999999998632 1111
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc----EEEEeccCCCcee
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT----LQASSELKAFMGA 226 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~----l~~~~e~~~~~v~ 226 (1196)
.... +..|...+.+++|+|||++|+ +++ .++.|++||..++. ......+|.+.+.
T Consensus 88 ~~~~--------------~~~~~~~v~~~~~~~~~~~l~-~~~------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~ 146 (372)
T 1k8k_C 88 PTLV--------------ILRINRAARCVRWAPNEKKFA-VGS------GSRVISICYFEQENDWWVCKHIKKPIRSTVL 146 (372)
T ss_dssp EEEE--------------CCCCSSCEEEEEECTTSSEEE-EEE------TTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred eeEE--------------eecCCCceeEEEECCCCCEEE-EEe------CCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence 1111 114556789999999999999 565 46899999997666 2333467888999
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-------------------CeeEEEEEeccCCCCcEEEEEEccCCCee
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYERN-------------------GLERSSFDINEQIDSTVELLKWNCMSDLL 287 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-------------------Gl~~~~f~l~~~~~~~V~~laWSpDg~~L 287 (1196)
+++|+|+|++|++++.++ .|++|+.. |.... .+. .+...|.+++|+|||++|
T Consensus 147 ~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l 217 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGSCDF------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMF--ESS-SSCGWVHGVCFSANGSRV 217 (372)
T ss_dssp EEEECTTSSEEEEEETTS------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE--ECC-CCSSCEEEEEECSSSSEE
T ss_pred EEEEcCCCCEEEEEcCCC------CEEEEEcccccccccccccccccccchhhheE--ecC-CCCCeEEEEEECCCCCEE
Confidence 999999999999999864 69999942 32222 222 235679999999999999
Q ss_pred EEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEE-----eee--cCCCee
Q 000992 288 AAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIW-----TTA--VMENST 360 (1196)
Q Consensus 288 As~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~-----~~~--~~d~~~ 360 (1196)
++++.|+ +|++|++.+... ...+..+......+.|+|++.. +..+ .+|.+.+++..- ... .+....
T Consensus 218 ~~~~~d~---~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~-l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 218 AWVSHDS---TVCLADADKKMA--VATLASETLPLLAVTFITESSL-VAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEEETTT---EEEEEEGGGTTE--EEEEECSSCCEEEEEEEETTEE-EEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEEeCCC---EEEEEECCCCce--eEEEccCCCCeEEEEEecCCCE-EEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9999999 999999987642 3344443333488999998863 4554 678776544321 000 000000
Q ss_pred EEEEcCCEEEEe---eccccCC--CCCceeeeecCCCCEEEEEEecCC-C-CCEEEEEECCCcEEEEeCCC
Q 000992 361 ALVIDGSKILVT---PLSLSLM--PPPMYLFSLKFPTAVTEMAFYSKS-S-KNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 361 v~viDg~~l~lt---~l~~~~v--pppm~~~~l~~~~~V~~Vafspdg-~-~~~lAs~~~dg~v~lw~~~~ 424 (1196)
........+.++ +...... |.+.....-.|.+.|++|+|+|.. . .+.|++++.||+|++|++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred chhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 000000001111 1111110 111011112588999999977543 0 15999999999999999864
No 53
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-25 Score=255.45 Aligned_cols=301 Identities=12% Similarity=0.073 Sum_probs=218.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.|+.|..|+. .+++. +.+ +..+ .+.|.+++|+|+++.|++++.||+|++
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~--~~~~~---~~~----~~~h----~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYS--LNGER---LGT----LDGH----TGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEET--TTCCE---EEE----ECCC----SSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeC--CCchh---hhh----hhhc----CCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 7999999999999999999999999998 44433 111 3333 468999999999999999999999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCC-----ceEEEEeccCc-eeeeeecccccCccccccCccccCCC
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGF-----GQILVMTHDWD-LLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d-----~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
||..+++.. ... +...|.+++|+|||+.|++++.+ ++|.+|+.... ......... ...+ ..+..+..
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~---~~~~--~~~~~~~~ 174 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS---EEPI--HKIITHEG 174 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC---SSCS--EEEECCTT
T ss_pred EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc---ccee--eeccCCcC
Confidence 999887654 444 68899999999999999999999 99999863211 111111000 0001 01113333
Q ss_pred --CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 175 --FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 175 --~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
.+.+++|+|||++|+ +++ .++.|++||..+ ++.......+.+.+.+++|+|+|++|++++.+ ..
T Consensus 175 ~~~~~~~~~~~~~~~l~-~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~ 241 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYII-AGH------KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD------TN 241 (369)
T ss_dssp CCCEEEEEECGGGCEEE-EEE------TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT------SE
T ss_pred ccceeEEEEcCCCCEEE-EEc------CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC------ce
Confidence 789999999999999 665 468999999977 78888888899999999999999999999885 47
Q ss_pred EEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccC
Q 000992 252 IVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 252 V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
|.+|+.. +.....+. ....+..++|+|+|+.|++++.++ .+.+|...... .......|+..
T Consensus 242 i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~-----------~~~~i~~~d~~ 303 (369)
T 3zwl_B 242 SFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILGGGQE---AKDVTTTSANE-----------GKFEARFYHKI 303 (369)
T ss_dssp EEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECCC---------------------------CEEEEEETT
T ss_pred EEEEECCCCceeeeec----CCCCceeEEecCCCceEEEeecCC---CceEEEEecCC-----------CcceeEEEecC
Confidence 9999954 44333332 345799999999999999999887 45554433210 00011223322
Q ss_pred CCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEE
Q 000992 331 KPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLA 409 (1196)
Q Consensus 331 ~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lA 409 (1196)
... .+ ..+ .|...|.+++|+|++ +.||
T Consensus 304 ~~~----------------------------------~~----------------~~~~~~~~~v~~~~~s~~~--~~l~ 331 (369)
T 3zwl_B 304 FEE----------------------------------EI----------------GRVQGHFGPLNTVAISPQG--TSYA 331 (369)
T ss_dssp TCC----------------------------------EE----------------EEEECCSSCEEEEEECTTS--SEEE
T ss_pred CCc----------------------------------ch----------------hheecccCcEEEEEECCCC--CEEE
Confidence 211 00 111 266789999999999 8999
Q ss_pred EEECCCcEEEEeCCC
Q 000992 410 AILSDGCLCVVDLPA 424 (1196)
Q Consensus 410 s~~~dg~v~lw~~~~ 424 (1196)
+++.||+|++|++..
T Consensus 332 s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 332 SGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEETTSEEEEEEECH
T ss_pred EEcCCCeEEEEECcc
Confidence 999999999999975
No 54
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=1.5e-26 Score=268.07 Aligned_cols=242 Identities=13% Similarity=0.104 Sum_probs=187.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.++ +.|.+++.|+.|..||+ .+++..... ...+.+| .+.|.+++|+|||+.|++++.||+|++
T Consensus 84 ~v~~~~~s~d-~~l~~~s~dg~v~lWd~--~~~~~~~~~---~~~~~~H----~~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 84 GVADLTWVGE-RGILVASDSGAVELWEL--DENETLIVS---KFCKYEH----DDIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp CEEEEEEETT-TEEEEEETTSEEEEEEE--CTTSSCEEE---EEEEECC----SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CEEEEEEeCC-CeEEEEECCCEEEEEec--cCCCceeEe---eccccCC----CCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 5788999998 46778999999999999 554431111 1112234 468999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
||..++++ .....|.+.|.+++|||||. +||+++.|++|++|+ +...+....... .+...+.+
T Consensus 154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--------------~~~~~~~~ 219 (344)
T 4gqb_B 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS--------------APGYLPTS 219 (344)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------------CCCEEE
T ss_pred EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc--------------eeecccee
Confidence 99998765 35555799999999999995 789999999999986 333333322211 23346789
Q ss_pred EEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC-CeEEEEecCCCCCCCCeEEEEe
Q 000992 179 ISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 179 isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG-~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
++|+|+ +++|| +++ .|++|+|||..+|+++.++.+|.+.|.+++|+|+| ++||+++.|. +|++|+
T Consensus 220 ~~~~p~~~~~l~-sg~------~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~------~i~vwd 286 (344)
T 4gqb_B 220 LAWHPQQSEVFV-FGD------ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC------SLAVLD 286 (344)
T ss_dssp EEECSSCTTEEE-EEE------TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTS------CEEEEC
T ss_pred eeecCCCCcceE-Eec------cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC------eEEEEE
Confidence 999995 45777 565 47999999998999999999999999999999998 5899999874 699999
Q ss_pred CCCeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecC
Q 000992 257 RNGLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.+.... +.+.. |.+.|.+|+|||||+ +||+++.|+ +|++|++..
T Consensus 287 ~~~~~~--~~~~~-H~~~V~~v~~sp~~~~llas~s~D~---~v~~w~v~~ 331 (344)
T 4gqb_B 287 SSLSEL--FRSQA-HRDFVRDATWSPLNHSLLTTVGWDH---QVVHHVVPT 331 (344)
T ss_dssp TTCCEE--EEECC-CSSCEEEEEECSSSTTEEEEEETTS---CEEEEECCC
T ss_pred CCCCcE--EEEcC-CCCCEEEEEEeCCCCeEEEEEcCCC---eEEEEECCC
Confidence 764322 23433 467899999999987 678999999 999999875
No 55
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=4.8e-28 Score=280.72 Aligned_cols=239 Identities=11% Similarity=0.072 Sum_probs=174.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe--E-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA--T-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~--~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
+.|.+++|+|||+.|++++.||+|++|+..++. . ..+..|.+.|.+++|||||++||+++.|++|++|+.. ..
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~----~~ 87 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR----PD 87 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---------
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC----CC
Confidence 579999999999999999999999999999873 3 2444578999999999999999999999999987532 11
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc---EEEEecc-CCCceeEE
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT---LQASSEL-KAFMGAVL 228 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~---l~~~~e~-~~~~v~sl 228 (1196)
..+... ..+.+|...+.+++|+|||++|+ +++ .+++|+|||..+++ +...... |.+.+.++
T Consensus 88 ~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~-~~~------~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 88 GTWKQT--------LVLLRLNRAATFVRWSPNEDKFA-VGS------GARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp -CCCCE--------EECCCCSSCEEEEECCTTSSCCE-EEE------SSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred Cceeee--------eEecccCCceEEEEECCCCCEEE-EEe------cCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 100000 01225667899999999999999 565 46899999997776 3566665 89999999
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe---------------eEEEEEeccCCCCcEEEEEEccCCCeeEEEEcc
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGL---------------ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRF 293 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl---------------~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d 293 (1196)
+|+|+|++||+++.|+ .|++|+.+.. ..++......+...|.+++|||||++||+++.|
T Consensus 153 ~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADR------KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD 226 (377)
T ss_dssp EECTTSSEEEEEESSS------CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT
T ss_pred EEcCCCCEEEEEeCCC------EEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC
Confidence 9999999999999864 5999995310 112221111345679999999999999999999
Q ss_pred CCcceEEEEEecCCEE--EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcE
Q 000992 294 EEYDSVKICFFSNNHW--YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~w--ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1196)
+ +|++|++.+... .+.+.+..+......+.|+|++.. |..+. ++.+
T Consensus 227 ~---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~-~~~~ 274 (377)
T 3dwl_C 227 S---SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAI-VAAGY-NYSP 274 (377)
T ss_dssp T---EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEE-EEEES-SSSE
T ss_pred C---cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCE-EEEEc-CCcE
Confidence 9 999999987542 112344444334488999999854 55554 3444
No 56
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.95 E-value=1.2e-25 Score=264.50 Aligned_cols=285 Identities=11% Similarity=0.045 Sum_probs=205.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccc------cccccccC-CCCCCEEEEEEccCCCEEEEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAIS------AEIEHIDL-EPGDSITAFDYLMEKEALIVGT 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~------~~l~~~~~-~~~~~v~~v~~spd~~~La~as 94 (1196)
.+.+++|.+++..|+++++ +.+..|+. ..+.....+..-. ..+..... .....|.+++|+|||+.|++++
T Consensus 66 ~V~~v~fspdg~~la~g~~-~~v~i~~~--~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCN-KTTQVYRV--SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp CCCEEEECTTSSEEEEECB-SCEEEEET--TTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred EEEEEEECCCCCEEEEEcC-CcEEEEEe--cCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 6788999999999998774 56899998 4443311111000 00000000 0023599999999999999999
Q ss_pred CCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccC
Q 000992 95 SSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 95 ~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
.||+|++||..+++. ..+..|...|.+++|+|||+.|++++.|++|++|+. ........ .+
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----------------~~ 205 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-----------------SI 205 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------EC
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-----------------Ec
Confidence 999999999998765 355567899999999999999999999999999963 22222111 12
Q ss_pred CCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-------ccCCCceeEEEEcCCCCeEEEEecCC
Q 000992 173 FSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-------ELKAFMGAVLEWMPSGANIAAVYDRK 244 (1196)
Q Consensus 173 ~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-------e~~~~~v~slawsPdG~~IAs~s~d~ 244 (1196)
.+.+.+++|+| ||++|| +++ .|++|+|||..+|++.... .+|.+.+.+++|+|+|++||+++.|
T Consensus 206 ~~~v~~~~~~~~~~~~l~-~~s------~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d- 277 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIA-AGS------LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD- 277 (393)
T ss_dssp SSCEEEEEECSTTCCEEE-EEE------TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT-
T ss_pred CCCcEEEEEECCCCCEEE-EEc------CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC-
Confidence 34679999999 999999 565 4689999999899887766 4688889999999999999999986
Q ss_pred CCCCCCeEEEEeCCCeeE---------E--EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE
Q 000992 245 SENKCPSIVFYERNGLER---------S--SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 245 ~~~~~~~V~~~e~nGl~~---------~--~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq 313 (1196)
..|++|+...... + ...+.. +...|.+++|+|+|++|++++.|+ +|++|+..+... ..
T Consensus 278 -----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~---~v~iwd~~~~~~--~~ 346 (393)
T 1erj_A 278 -----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDR---GVLFWDKKSGNP--LL 346 (393)
T ss_dssp -----SEEEEEEC---------------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTS---EEEEEETTTCCE--EE
T ss_pred -----CEEEEEECCCCCCcccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCC---eEEEEECCCCeE--EE
Confidence 4799998542110 0 112222 356799999999999999999999 999999987653 23
Q ss_pred EEEEecCCcEEEEEccCC-----CceEEEEecCCcEE
Q 000992 314 EIRYLRRDGIRFMWHPTK-----PLQLICWTLDGQIT 345 (1196)
Q Consensus 314 ~l~~~~~~~~~v~Wsp~~-----~~~L~~~~~~g~~~ 345 (1196)
.+..|......+.|+|.. ...|+.++.||.+.
T Consensus 347 ~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~ 383 (393)
T 1erj_A 347 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383 (393)
T ss_dssp EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred EECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEE
Confidence 455554445788888742 22355555555554
No 57
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=2.4e-26 Score=259.64 Aligned_cols=250 Identities=14% Similarity=0.189 Sum_probs=192.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC--CCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME--KEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd--~~~La~as~dG~I 99 (1196)
.+.+++|++++..|++++.|+.|..|++ ..+... .+.+ +.+| .+.|.+++|+|+ ++.|++++.||+|
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~--~~~~~~-~~~~----l~gH----~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEV--EGETHK-LIDT----LTGH----EGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEB--CSSCBC-CCEE----ECCC----SSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEec--CCCCcE-EEEE----Eccc----cCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 7889999999999999999999999998 332211 1111 4445 468999999864 8999999999999
Q ss_pred EEEECCCCe---EEEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 100 LLHSVDGNA---TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 100 ~lw~~~~~~---~e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
++||..++. +.....|...|.+++|+|| |.+||+++.|++|++|+..-... ... ..+.+|..
T Consensus 80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~--~~~-----------~~~~~h~~ 146 (297)
T 2pm7_B 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT--TSP-----------IIIDAHAI 146 (297)
T ss_dssp EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC--BCC-----------EEEECCSS
T ss_pred EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc--eee-----------eeeecccC
Confidence 999998763 2344557889999999998 89999999999999986321100 000 01235667
Q ss_pred CeEEEEEccC-------------CceEEEeeccccccCCCCEEEEEECCCCc----EEEEeccCCCceeEEEEcCCC---
Q 000992 175 FKSPISWRGD-------------GKYFATLSEFCNSSKLHKRLKVWERDSGT----LQASSELKAFMGAVLEWMPSG--- 234 (1196)
Q Consensus 175 ~v~~isWspD-------------G~~lAsvss~d~~~~~d~~irVWd~~~G~----l~~~~e~~~~~v~slawsPdG--- 234 (1196)
.+.+++|+|+ |++|| +++ .|++|||||..+++ +..++++|.+.|.+++|+|+|
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~-sgs------~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~ 219 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFV-TGG------ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (297)
T ss_dssp CEEEEEECCCC------------CCEEE-EEE------TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred ccceEeecCCcccccccCCCCCCcceEE-EEc------CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence 8899999997 57899 565 46899999986666 667888999999999999995
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCee--EEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLE--RSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWY 310 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~--~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wy 310 (1196)
++||+++.|. +|++|+.+... .....+. ..+...|.+++|||||++||+++.|+ +|+||+.. +.+|.
T Consensus 220 ~~las~s~D~------~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~---~v~lw~~~~~g~w~ 290 (297)
T 2pm7_B 220 SYMASVSQDR------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLWKENLEGKWE 290 (297)
T ss_dssp EEEEEEETTS------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS---CEEEEEECTTSCEE
T ss_pred eEEEEEECCC------cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC---cEEEEEECCCCcEE
Confidence 8999999874 69999865311 0111221 22356799999999999999999999 99999986 56674
Q ss_pred E
Q 000992 311 L 311 (1196)
Q Consensus 311 l 311 (1196)
.
T Consensus 291 ~ 291 (297)
T 2pm7_B 291 P 291 (297)
T ss_dssp E
T ss_pred e
Confidence 3
No 58
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.5e-28 Score=294.35 Aligned_cols=264 Identities=11% Similarity=0.018 Sum_probs=187.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
.++|.+|+|||||+.+|+|+.|++|+ |...++ .+..|...|++++||||| .++++.+|+.....+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~---- 79 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL---- 79 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS----
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc--eecCCCccEEEEEECCCC-------CcceEEEEeCCCceE----
Confidence 36899999999999999999999999 655432 334579999999999999 466654443211110
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC-----ceeEEE
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-----MGAVLE 229 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~-----~v~sla 229 (1196)
+ . + .+.+.|.+++|||||++|| +++ .+++|+|||+ ++ ++.+++ |.. .+.+++
T Consensus 80 ~-~-----------~-~~~~~V~~vawSPdG~~LA-s~s------~dg~V~iwd~-~~-~l~~l~-~~~~~~~~sv~sva 136 (588)
T 2j04_A 80 L-N-----------S-QPVCYPRVCKPSPIDDWMA-VLS------NNGNVSVFKD-NK-MLTNLD-SKGNLSSRTYHCFE 136 (588)
T ss_dssp S-T-----------T-SCSCCEEEEEECSSSSCEE-EEE------TTSCEEEEET-TE-EEEECC-CSSCSTTTCEEEEE
T ss_pred e-e-----------c-CCCCcEEEEEECCCCCEEE-EEe------CCCcEEEEeC-Cc-eeeecc-CCCccccccEEEEE
Confidence 0 0 0 2346789999999999999 676 4689999998 55 666666 665 489999
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCee--------EEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLE--------RSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~--------~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
|||||++||+|+.| .+|++|+..+.. ...+... ..+..+|.+|+||||| ||+++.|+ +|+
T Consensus 137 fSPDG~~LAsgs~D------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~---tVr 205 (588)
T 2j04_A 137 WNPIESSIVVGNED------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNN---SVF 205 (588)
T ss_dssp ECSSSSCEEEEETT------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTC---CEE
T ss_pred EcCCCCEEEEEcCC------CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCC---eEE
Confidence 99999999999996 479999976542 1222211 2245789999999999 78888888 999
Q ss_pred EEEecCCEEE-EEEEEE-EecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 301 ICFFSNNHWY-LKYEIR-YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 301 lW~~~n~~wy-lkq~l~-~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
+|+..+..-. ..+++. .+...+..++|+ + ..|++.. +| +|++|++....
T Consensus 206 lWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~-------------------------tIkLWd~~~~~ 256 (588)
T 2j04_A 206 SMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PG-------------------------YVHKIDLKNYS 256 (588)
T ss_dssp EECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SS-------------------------EEEEEETTTTE
T ss_pred EEECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe-CC-------------------------eEEEEECCCCe
Confidence 9999764410 112342 332234677787 3 3344433 33 44444433211
Q ss_pred CCCCceeeeecCCCCEEEEEE--ecCCCCCEEEEEECCCcEEEEeCC
Q 000992 379 MPPPMYLFSLKFPTAVTEMAF--YSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 379 vpppm~~~~l~~~~~V~~Vaf--spdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
......+|.+.|++|+| |||+ +.|+++..||+ ++|..+
T Consensus 257 ----~~~~~~gh~~~V~~va~~~s~d~--~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 257 ----ISSLKTGSLENFHIIPLNHEKES--TILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ----EEEEECSCCSCCCEEEETTCSSC--EEEEECSSCEE-EEEESS
T ss_pred ----EEEEEcCCCceEEEEEeeeCCCC--CEEEEEcCCCC-EEEeec
Confidence 01123368899999999 9999 89999999999 999875
No 59
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=2.8e-25 Score=251.22 Aligned_cols=274 Identities=12% Similarity=0.073 Sum_probs=208.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|++++..|++++.|+.|..|+. ..++.. .. +.+| ...|.+++|+|+++.|++++.||+|++
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~--~~~~~~---~~----~~~h----~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFE---KT----ISGH----KLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET--TTCCEE---EE----ECCC----SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeC--CCcccc---hh----hccC----CCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 7899999999999999999999999998 444331 11 3333 357999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||..+++. ..+..|.+.|.+++|+|||++|++++.|++|++|+. ....+.. +..|...+.++
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------~~~~~~~v~~~ 155 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT----------------LPAHSDPVSAV 155 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE----------------ECCCSSCEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE----------------ecCCCCcEEEE
Confidence 99988654 455567899999999999999999999999999873 2332222 22455678999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
+|+|||++|+ +++ .|++|+|||..+++...... .+...+..++|+|+|++|++++.+ ..|++|+..
T Consensus 156 ~~~~~~~~l~-~~~------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~iwd~~ 222 (312)
T 4ery_A 156 HFNRDGSLIV-SSS------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD------NTLKLWDYS 222 (312)
T ss_dssp EECTTSSEEE-EEE------TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT------TEEEEEETT
T ss_pred EEcCCCCEEE-EEe------CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC------CeEEEEECC
Confidence 9999999999 565 46899999998888877653 456678999999999999999986 479999954
Q ss_pred -CeeEEEEEeccCC-C-CcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceE
Q 000992 259 -GLERSSFDINEQI-D-STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQL 335 (1196)
Q Consensus 259 -Gl~~~~f~l~~~~-~-~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L 335 (1196)
|..... +..+. . ..+......+++++|++++.|+ +|++|++.+.. +.+.+..+......+.|+|+++. +
T Consensus 223 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg---~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~-l 294 (312)
T 4ery_A 223 KGKCLKT--YTGHKNEKYCIFANFSVTGGKWIVSGSEDN---LVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENI-I 294 (312)
T ss_dssp TTEEEEE--ECSSCCSSSCCCEEEECSSSCEEEECCTTS---CEEEEETTTCC--EEEEECCCSSCEEEEEECSSSSE-E
T ss_pred CCcEEEE--EEecCCceEEEEEEEEeCCCcEEEEECCCC---EEEEEECCCch--hhhhhhccCCcEEEEeecCcCCc-e
Confidence 433332 22221 1 1233334457899999999999 99999998764 33455544444488999999875 5
Q ss_pred EEEe--cCCcEE
Q 000992 336 ICWT--LDGQIT 345 (1196)
Q Consensus 336 ~~~~--~~g~~~ 345 (1196)
..++ .||.+.
T Consensus 295 ~s~~~~~d~~i~ 306 (312)
T 4ery_A 295 ASAALENDKTIK 306 (312)
T ss_dssp EEEECTTTCCEE
T ss_pred EEEEccCCccEE
Confidence 5554 356654
No 60
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.1e-27 Score=276.12 Aligned_cols=325 Identities=11% Similarity=0.025 Sum_probs=227.8
Q ss_pred CCCEEEEEEcc-CCCEEEEEECCCcEEEEECCC---Ce---EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-
Q 000992 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDG---NA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD- 146 (1196)
Q Consensus 75 ~~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~---~~---~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~- 146 (1196)
.+.|.+++|+| +++.|++|+.||+|++||..+ +. ......|.+.|.+++|+|||+.||+++.|++|++|+..
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 36899999999 999999999999999999865 32 12222378999999999999999999999999999642
Q ss_pred ---CceeeeeecccccCccccccCcccc--CCCCeEEEE--EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 147 ---WDLLYENPLEELAEGFDVHEPELSS--SFSFKSPIS--WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 147 ---~d~~~~~~l~~~~~~~~Vs~tqf~~--~~~~v~~is--WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
...+.....+ .+....|.+ +...+.++. |+|||.+|+ +++ .+++|++||..++++..++.
T Consensus 143 ~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~------~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 143 YQQESEVKFLNCE------CIRKINLKNFGKNEYAVRMRAFVNEEKSLLV-ALT------NLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp EEETTEEEEEEEE------EEEEEEGGGGSSCCCEEEEEEEECSSCEEEE-EEE------TTSEEEEEETTTCCEEEEEE
T ss_pred ccCCceeeccccc------eeEEEEccCcccccCceEEEEEEcCCCCEEE-EEe------CCCeEEEEeCCCCeeeEEEc
Confidence 2222111111 111122333 556777887 789999999 565 46999999999999999887
Q ss_pred c--CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEc----cCCCeeEEEEc
Q 000992 220 L--KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWN----CMSDLLAAVVR 292 (1196)
Q Consensus 220 ~--~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWS----pDg~~LAs~~~ 292 (1196)
. |.+.+.+++|+|+|++||+++.|+ .|++|+. +|.....+ ...+...|.+++|+ |||++||+++.
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRFNVLIRSW--SFGDHAPITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTTTEEEEEE--BCTTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCCccEEEEE--ecCCCCceEEEEeccccCCCccEEEEEcC
Confidence 7 789999999999999999999864 6999995 45444433 22344579999665 57889999999
Q ss_pred cCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEe
Q 000992 293 FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVT 372 (1196)
Q Consensus 293 d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt 372 (1196)
|+ +|++|++.+... .+.+..+......+.|+|++... .+ . .
T Consensus 282 dg---~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l-----~~------------------------~-~---- 322 (437)
T 3gre_A 282 KT---FLTIWNFVKGHC--QYAFINSDEQPSMEHFLPIEKGL-----EE------------------------L-N---- 322 (437)
T ss_dssp TE---EEEEEETTTTEE--EEEEESSSSCCCGGGGSCBCSSG-----GG------------------------C-C----
T ss_pred CC---cEEEEEcCCCcE--EEEEEcCCCCCccceeccccccc-----cc------------------------c-e----
Confidence 99 999999987642 22332221111233444443220 00 0 0
Q ss_pred eccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCce---eeee---------
Q 000992 373 PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEF---VVEA--------- 440 (1196)
Q Consensus 373 ~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~---~~~~--------- 440 (1196)
+ ....|...|.+++|+ ++ +.|++++.||+|++|++.+..+...+.|+.- ....
T Consensus 323 -~-----------~~~~~~~~v~~l~~~-~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (437)
T 3gre_A 323 -F-----------CGIRSLNALSTISVS-ND--KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTM 387 (437)
T ss_dssp -C-----------CCCCSGGGGCCEEEE-TT--EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEE
T ss_pred -e-----------cccccCCceEEEEEC-Cc--eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEE
Confidence 0 011266789999999 66 7999999999999999988766655554311 0000
Q ss_pred ---e----------cccccCCcEEEEEEecC--CeEEEEEecCCCCceEEE
Q 000992 441 ---C----------ISETAFGSVIHLIWLGS--HLLLSVSHHGPRHSNYFR 476 (1196)
Q Consensus 441 ---~----------~~~~~~~~v~~l~~~~d--~~lla~~~~~~~~~~~~~ 476 (1196)
. ....|.+.|..++|+++ +.+|++++.+ ..+.+|
T Consensus 388 ~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d--G~I~iw 436 (437)
T 3gre_A 388 LLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS--GLIGIF 436 (437)
T ss_dssp EEEECC-------------CCCEEEEEEEESSSSEEEEEEETT--SCEEEE
T ss_pred EEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCC--ceEEEe
Confidence 0 00126678999999998 7888888765 566666
No 61
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=3.9e-25 Score=251.07 Aligned_cols=299 Identities=15% Similarity=0.134 Sum_probs=215.1
Q ss_pred eeeecCcEEEEEECCC-CCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 112 VGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 112 vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
+.+|.+.|++++|||| |++||+++.|++|++|+.. .+.....+.. .+.+|...|.+++|+|||++|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~-----------~l~~h~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR-----------ALRGHSHFVSDVVISSDGQFAL 102 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE-----------EECCCSSCEEEEEECTTSSEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE-----------EEeCCCCCEEEEEECCCCCEEE
Confidence 3447999999999998 6899999999999999732 2222222222 2346778899999999999999
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEecc
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE 269 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~ 269 (1196)
+++ .|+.|++|+...+........+...+....|+|++++|++++.|+ .+++|+..+.......+ .
T Consensus 103 -s~~------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~------~~~~~d~~~~~~~~~~~-~ 168 (340)
T 4aow_A 103 -SGS------WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK------TIKLWNTLGVCKYTVQD-E 168 (340)
T ss_dssp -EEE------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSCEEEEECS-S
T ss_pred -EEc------ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC------eEEEEEeCCCceEEEEe-c
Confidence 565 468999999988887777777888889999999999999999864 59999976644332222 2
Q ss_pred CCCCcEEEEEEccCCC--eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEE
Q 000992 270 QIDSTVELLKWNCMSD--LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTY 347 (1196)
Q Consensus 270 ~~~~~V~~laWSpDg~--~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~ 347 (1196)
.+...|..++|++++. ++++++.|+ +|++|+..+... ...+..+......+.|+|++.. |++++.||.+
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~---~i~i~d~~~~~~--~~~~~~h~~~v~~~~~s~~~~~-l~s~s~Dg~i--- 239 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDK---LVKVWNLANCKL--KTNHIGHTGYLNTVTVSPDGSL-CASGGKDGQA--- 239 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTS---CEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSE-EEEEETTCEE---
T ss_pred cccCcccceEEccCCCCcEEEEEcCCC---EEEEEECCCCce--eeEecCCCCcEEEEEECCCCCE-EEEEeCCCeE---
Confidence 3456799999998864 678888998 999999988653 3344444334488999998864 6666655544
Q ss_pred EEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCc
Q 000992 348 NFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1196)
Q Consensus 348 ~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~ 427 (1196)
++|+++.. ...+.+.+...|.+++|+|++ .+++++.|++|++|+..+...
T Consensus 240 ----------------------~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~---~~~~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 240 ----------------------MLWDLNEG-----KHLYTLDGGDIINALCFSPNR---YWLCAATGPSIKIWDLEGKII 289 (340)
T ss_dssp ----------------------EEEETTTT-----EEEEEEECSSCEEEEEECSSS---SEEEEEETTEEEEEETTTTEE
T ss_pred ----------------------EEEEeccC-----ceeeeecCCceEEeeecCCCC---ceeeccCCCEEEEEECCCCeE
Confidence 33333211 122344566789999999997 455666899999999986544
Q ss_pred cccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 428 LEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 428 ~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
...+.+.... .....+...|..++|+|||++|++++.+ ..+.+|++.
T Consensus 290 ~~~~~~~~~~---~~~~~h~~~v~~l~~s~dg~~l~sgs~D--g~v~iW~~~ 336 (340)
T 4aow_A 290 VDELKQEVIS---TSSKAEPPQCTSLAWSADGQTLFAGYTD--NLVRVWQVT 336 (340)
T ss_dssp EEEECCC----------CCCCCEEEEEECTTSSEEEEEETT--SCEEEEEEE
T ss_pred EEecccccee---eeccCCCCCEEEEEECCCCCEEEEEeCC--CEEEEEeCC
Confidence 3222221110 0012455689999999999999998876 689999874
No 62
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.95 E-value=1.9e-25 Score=255.07 Aligned_cols=304 Identities=10% Similarity=0.069 Sum_probs=209.1
Q ss_pred CCCEEEEEEccCCCEEE-EEEC---CCcEEEEECCCCeEE--EeeeecCcEEEEEECCC---CCEEEEEeCCceEEEEec
Q 000992 75 GDSITAFDYLMEKEALI-VGTS---SGLLLLHSVDGNATE--VVGRVEGGVRFISPSPD---GDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La-~as~---dG~I~lw~~~~~~~e--~vg~~~~~I~~~awSPD---g~~LA~~s~d~tV~l~~~ 145 (1196)
.+.|.+++|+|++..++ +++. ||+|++|+..+++.. ....|.+.|.+++|+|+ |++||+++.|++|.+|+.
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 36899999999997665 5554 999999999987653 23346889999999999 799999999999999863
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEE------EccCCceEEEeeccccccCCCCEEEEEECCCCc-EEEEe
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS------WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASS 218 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is------WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~ 218 (1196)
.-.. .... .+.+|...+.++. |+|||++|+ +++ .+++|+|||..+++ .....
T Consensus 98 ~~~~---~~~~-----------~~~~~~~~v~~~~~~~~~~~s~~~~~l~-~~~------~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 98 EAPE---MPVY-----------SVKGHKEIINAIDGIGGLGIGEGAPEIV-TGS------RDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp TSCS---SCSE-----------EECCCSSCEEEEEEESGGGCC-CCCEEE-EEE------TTSCEEEECTTSCSSCSEEE
T ss_pred CCCC---ccEE-----------EEEecccceEEEeeccccccCCCccEEE-EEe------CCCeEEEEeCCCCCCcceec
Confidence 2111 0111 2235667788885 578999999 565 46899999998776 66666
Q ss_pred ccCCC----ceeEEE----EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc---CCCee
Q 000992 219 ELKAF----MGAVLE----WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC---MSDLL 287 (1196)
Q Consensus 219 e~~~~----~v~sla----wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp---Dg~~L 287 (1196)
..+.+ .+.+++ |+|+|++|++++.+ ..|.+|+........ .. .+...|.+++|+| +++.|
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~--~~-~~~~~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN------GDIKLFDLRNMALRW--ET-NIKNGVCSLEFDRKDISMNKL 227 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT------SEEEEEETTTTEEEE--EE-ECSSCEEEEEESCSSSSCCEE
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEEEEccC------CeEEEEECccCceee--ec-CCCCceEEEEcCCCCCCCCEE
Confidence 65554 678888 89999999999985 479999965433211 11 2346799999999 99999
Q ss_pred EEEEccCCcceEEEEEecCCEEE--E-EEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEE
Q 000992 288 AAVVRFEEYDSVKICFFSNNHWY--L-KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVI 364 (1196)
Q Consensus 288 As~~~d~~~~~V~lW~~~n~~wy--l-kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~vi 364 (1196)
++++.|+ .|++|++.+.... + ...+..+......+.|+|++...+.+++.+|.+.+ |++...........
T Consensus 228 ~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i----wd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 228 VATSLEG---KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHL----WKYEYPIQRSKKDS 300 (357)
T ss_dssp EEEESTT---EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE----EEEECCSCC--CCT
T ss_pred EEECCCC---eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEE----eecCCCcccccccC
Confidence 9999999 9999998753321 1 01112232334889999998756778887887754 43331100000000
Q ss_pred cCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEE-EEECCCcEEEEeCCC
Q 000992 365 DGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLA-AILSDGCLCVVDLPA 424 (1196)
Q Consensus 365 Dg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lA-s~~~dg~v~lw~~~~ 424 (1196)
+|... ..........++ .|...|.+++|+|++ +.|+ +++.||+|++|++..
T Consensus 301 ~g~~~-------~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 301 EGIEM-------GVAGSVSLLQNVTLSTQPISSLDWSPDK--RGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp TSCCC-------CCCCEEEEEEEEECCSSCEEEEEECSSS--TTEEEEEETTSEEEEEEECC
T ss_pred CCCcc-------ccccccceeeccccCCCCeeEEEEcCCC--CeEEEEecCCCcEEEEECCC
Confidence 11000 000000122333 478899999999999 7888 799999999999875
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.4e-25 Score=247.29 Aligned_cols=277 Identities=12% Similarity=0.061 Sum_probs=210.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
.+.|.+++| |+++.|++++.||.|++||..++.. .....|.+.|.+++|||||+.|++++.|+.|.+|+. ++.....
T Consensus 18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~-~~~~~~~ 95 (313)
T 3odt_A 18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL-FATSGED 95 (313)
T ss_dssp SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET-TCCTTSC
T ss_pred CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe-eecCCCC
Confidence 468999999 9999999999999999999988765 355667899999999999999999999999999863 2221111
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC-
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP- 232 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP- 232 (1196)
... .+.+|...+.+++| +|.+|+ +++ .+++|++|| .++.......+.+.+.+++|+|
T Consensus 96 ~~~-----------~~~~~~~~i~~~~~--~~~~l~-~~~------~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 153 (313)
T 3odt_A 96 PLY-----------TLIGHQGNVCSLSF--QDGVVI-SGS------WDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF 153 (313)
T ss_dssp C-C-----------EECCCSSCEEEEEE--ETTEEE-EEE------TTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET
T ss_pred ccc-----------chhhcccCEEEEEe--cCCEEE-EEe------CCCCEEEEc--CCcEEEecccCCCceeEEEEccC
Confidence 111 22356778899999 677888 565 468999999 6778888888999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
+++++++++.++ .|.+|+.. .... .+...+...|..++|+|+|. |++++.|+ .|++|++.+.. ..
T Consensus 154 ~~~~l~~~~~d~------~i~i~d~~-~~~~--~~~~~~~~~i~~~~~~~~~~-~~~~~~dg---~i~i~d~~~~~--~~ 218 (313)
T 3odt_A 154 SENKFLTASADK------TIKLWQND-KVIK--TFSGIHNDVVRHLAVVDDGH-FISCSNDG---LIKLVDMHTGD--VL 218 (313)
T ss_dssp TTTEEEEEETTS------CEEEEETT-EEEE--EECSSCSSCEEEEEEEETTE-EEEEETTS---EEEEEETTTCC--EE
T ss_pred CCCEEEEEECCC------CEEEEecC-ceEE--EEeccCcccEEEEEEcCCCe-EEEccCCC---eEEEEECCchh--hh
Confidence 999999999864 69999943 2222 33443567899999999999 99999999 99999998754 23
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCC
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFP 391 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~ 391 (1196)
..+..+......+.|+|++ . +.+++.+|.+. .|+ ++.. .....+ .+.
T Consensus 219 ~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~----iwd---------------------~~~~-----~~~~~~~~~~ 266 (313)
T 3odt_A 219 RTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVR----IWS---------------------KENG-----SLKQVITLPA 266 (313)
T ss_dssp EEEECCSSCEEEEEECTTS-C-EEEEETTSEEE----EEC---------------------TTTC-----CEEEEEECSS
T ss_pred hhhhcCCceEEEEEEecCC-C-EEEEecCCEEE----EEE---------------------CCCC-----ceeEEEeccC
Confidence 3444443344889999988 3 66666666543 232 2211 111223 256
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 392 ~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
..|.+++|+|++ + +++++.||.|++|++.+.
T Consensus 267 ~~i~~~~~~~~~--~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 267 ISIWSVDCMSNG--D-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEEECTTS--C-EEEEETTSCEEEEESCGG
T ss_pred ceEEEEEEccCC--C-EEEEeCCCcEEEEeCCCC
Confidence 689999999999 5 667899999999999864
No 64
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.1e-25 Score=251.43 Aligned_cols=283 Identities=10% Similarity=-0.035 Sum_probs=205.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
.+.|.+++|+||++.|++++.||.|++||..+++. ..+..|.+.|.+++|||||++||+++.|++|.+|+. ....+..
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 111 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT 111 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 46899999999999999999999999999987654 466667899999999999999999999999999973 3333332
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc-----------EEEEeccC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT-----------LQASSELK 221 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~-----------l~~~~e~~ 221 (1196)
.. +...+.+++|+|||++|+ +++.+.. ..++.|++||..++. .......+
T Consensus 112 ~~-----------------~~~~v~~~~~~~~~~~l~-~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 112 WK-----------------SPVPVKRVEFSPCGNYFL-AILDNVM-KNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp EE-----------------CSSCEEEEEECTTSSEEE-EEECCBT-TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred ee-----------------cCCCeEEEEEccCCCEEE-EecCCcc-CCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 22 235679999999999999 5542100 123899999985543 12223334
Q ss_pred CC--ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC--eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcc
Q 000992 222 AF--MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG--LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297 (1196)
Q Consensus 222 ~~--~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG--l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~ 297 (1196)
.+ .+.+++|+|+|++|++++.+ ..|.+|+... .... .+.. +...|.+++|+|||++|++++.|+
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~d~--- 240 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKD------GKISKYDVSNNYEYVD--SIDL-HEKSISDMQFSPDLTYFITSSRDT--- 240 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETT------SEEEEEETTTTTEEEE--EEEC-CSSCEEEEEECTTSSEEEEEETTS---
T ss_pred cCccceeEEEEcCCCCEEEEEcCC------CEEEEEECCCCcEeEE--EEec-CCCceeEEEECCCCCEEEEecCCc---
Confidence 44 78999999999999999885 4799999653 3332 2332 356799999999999999999999
Q ss_pred eEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeecccc
Q 000992 298 SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS 377 (1196)
Q Consensus 298 ~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~ 377 (1196)
.|++|++.+... ...+. +......+.|+|++
T Consensus 241 ~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~~---------------------------------------------- 271 (369)
T 3zwl_B 241 NSFLVDVSTLQV--LKKYE-TDCPLNTAVITPLK---------------------------------------------- 271 (369)
T ss_dssp EEEEEETTTCCE--EEEEE-CSSCEEEEEECSSS----------------------------------------------
T ss_pred eEEEEECCCCce--eeeec-CCCCceeEEecCCC----------------------------------------------
Confidence 999999876432 11111 11111444455544
Q ss_pred CCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCC--------------cEEEEeCCCCCccccccCCceeeeeecc
Q 000992 378 LMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG--------------CLCVVDLPAPDMLEDLEGTEFVVEACIS 443 (1196)
Q Consensus 378 ~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg--------------~v~lw~~~~~~~~~~~~g~~~~~~~~~~ 443 (1196)
+.+++++.++ .+++|+..+......+.
T Consensus 272 ----------------------------~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----------- 312 (369)
T 3zwl_B 272 ----------------------------EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ----------- 312 (369)
T ss_dssp ----------------------------SEEEEEECCC-------------CEEEEEETTTCCEEEEEE-----------
T ss_pred ----------------------------ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee-----------
Confidence 3444444433 78999987654442222
Q ss_pred cccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 444 ETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 444 ~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
.+...|..++|+|++.+|++++.+ ..+.+|.+.
T Consensus 313 -~~~~~v~~~~~s~~~~~l~s~~~d--g~v~iw~~~ 345 (369)
T 3zwl_B 313 -GHFGPLNTVAISPQGTSYASGGED--GFIRLHHFE 345 (369)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETT--SEEEEEEEC
T ss_pred -cccCcEEEEEECCCCCEEEEEcCC--CeEEEEECc
Confidence 234689999999999999998865 688999884
No 65
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=1.9e-26 Score=270.03 Aligned_cols=282 Identities=10% Similarity=0.040 Sum_probs=210.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.|+.|..||. .++.. +.+ +..| ...|.+++|+|+|+.|++++.||.|++
T Consensus 68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~--~~~~~---~~~----~~~h----~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQDGRLIVWNA--LTSQK---THA----IKLH----CPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEET--TTTEE---EEE----EECC----CTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCcc---ceE----EecC----CCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 7899999999999999999999999998 44432 111 3333 357999999999999999999999999
Q ss_pred EECCCCe--------EEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCcccc
Q 000992 102 HSVDGNA--------TEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 102 w~~~~~~--------~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
|+..+.. ...+..|.+.|.+++|+|++ ..|++++.|++|++|+. ....+...... ...+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~-----------~~~~ 203 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE-----------FPSG 203 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC-----------SSSS
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc-----------cCCC
Confidence 9986421 22344578899999999985 56999999999999863 22222211100 0125
Q ss_pred CCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCC
Q 000992 172 SFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1196)
Q Consensus 172 ~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~ 249 (1196)
|...+.+++|+| |+.+|+ +++ .|++|+|||.. +++...++.+|.+.|.+++|+|+|++||+++.|+
T Consensus 204 h~~~v~~~~~~~~~~~~l~-sgs------~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~----- 271 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFI-SGS------CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG----- 271 (380)
T ss_dssp CCSCEEEEEECSSSCCEEE-EEE------TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS-----
T ss_pred CccCeEEEEeecCCCCEEE-EEE------CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC-----
Confidence 677899999977 899999 565 47999999985 5677888899999999999999999999999875
Q ss_pred CeEEEEeC-CCeeEEEEEeccC----CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE----EecC
Q 000992 250 PSIVFYER-NGLERSSFDINEQ----IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR----YLRR 320 (1196)
Q Consensus 250 ~~V~~~e~-nGl~~~~f~l~~~----~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~----~~~~ 320 (1196)
+|++|+. +|.....+..... ....|.+++|||+|++|++++.|+ .|++|+....... ..+. .|..
T Consensus 272 -~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---~i~vwd~~~~~~~--~~~~~~~~~h~~ 345 (380)
T 3iz6_a 272 -TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG---DCYVWDTLLAEMV--LNLGTLQNSHEG 345 (380)
T ss_dssp -CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS---CEEEEETTTCCEE--EEECCSCSSCCC
T ss_pred -eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC---CEEEEECCCCceE--EEEecccCCCCC
Confidence 6999995 4544333322110 112489999999999999999999 9999998765421 2221 1222
Q ss_pred CcEEEEEccCCCceEEEEecCCcEEE
Q 000992 321 DGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 321 ~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
...++.|+|++.. |..++.||.+.+
T Consensus 346 ~v~~l~~s~dg~~-l~sgs~D~~i~i 370 (380)
T 3iz6_a 346 RISCLGLSSDGSA-LCTGSWDKNLKI 370 (380)
T ss_dssp CCCEEEECSSSSE-EEEECTTSCEEE
T ss_pred ceEEEEECCCCCE-EEEeeCCCCEEE
Confidence 3388999999875 677777776653
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=2.3e-25 Score=256.33 Aligned_cols=250 Identities=10% Similarity=0.100 Sum_probs=195.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|++++..|++++.++.|+.|+. ..++.. .+.+ +.+| .+.|.+++|+|+++.|++++.||+|++
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~--~~~~~~-~~~~----~~~h----~~~v~~~~~~~~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEK--SGNKWV-QVHE----LKEH----NGQVTGVDWAPDSNRIVTCGTDRNAYV 78 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEE--ETTEEE-EEEE----EECC----SSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeC--CCCcEE-eeee----ecCC----CCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence 7899999999999999999999999999 444310 1111 3333 358999999999999999999999999
Q ss_pred EECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 102 HSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 102 w~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
||..+++.. ....|...|.+++|+|||++||+++.|++|.+|+..-......... ...+|...+.+
T Consensus 79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----------~~~~~~~~i~~ 147 (372)
T 1k8k_C 79 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH-----------IKKPIRSTVLS 147 (372)
T ss_dssp EEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE-----------ECTTCCSCEEE
T ss_pred EECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee-----------eecccCCCeeE
Confidence 999887632 2345688999999999999999999999999986321110000000 01245678899
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEEC------------------CCCcEEEEeccCCCceeEEEEcCCCCeEEEE
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWER------------------DSGTLQASSELKAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~------------------~~G~l~~~~e~~~~~v~slawsPdG~~IAs~ 240 (1196)
++|+|||++|+ +++ .++.|++||. .+|++...+.+|.+.+.+++|+|+|++|+++
T Consensus 148 ~~~~~~~~~l~-~~~------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 148 LDWHPNSVLLA-AGS------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp EEECTTSSEEE-EEE------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred EEEcCCCCEEE-EEc------CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE
Confidence 99999999999 565 4689999993 4688999888899999999999999999999
Q ss_pred ecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC--CEEEEEE
Q 000992 241 YDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN--NHWYLKY 313 (1196)
Q Consensus 241 s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n--~~wylkq 313 (1196)
+.| ..|++|+. +|.....+ .. +...|.+++|+|||++|+++ .|+ .|++|+..+ ..|.+.+
T Consensus 221 ~~d------~~i~i~d~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~l~~~-~d~---~i~i~~~~~~~~~~~~~~ 283 (372)
T 1k8k_C 221 SHD------STVCLADADKKMAVATL--AS-ETLPLLAVTFITESSLVAAG-HDC---FPVLFTYDSAAGKLSFGG 283 (372)
T ss_dssp ETT------TEEEEEEGGGTTEEEEE--EC-SSCCEEEEEEEETTEEEEEE-TTS---SCEEEEEETTTTEEEECC
T ss_pred eCC------CEEEEEECCCCceeEEE--cc-CCCCeEEEEEecCCCEEEEE-eCC---eEEEEEccCcCceEEEee
Confidence 986 47999996 45444433 32 34579999999999999988 777 799999988 7775543
No 67
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=1.3e-25 Score=253.47 Aligned_cols=256 Identities=14% Similarity=0.148 Sum_probs=185.0
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC--CceEE
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD--GKYFA 189 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD--G~~lA 189 (1196)
...|.+.|.+++|||||++||+++.|++|++|+..... ...+ ..+.+|.+.|.+++|+|+ |++||
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~--~~~~-----------~~l~gH~~~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET--HKLI-----------DTLTGHEGPVWRVDWAHPKFGTILA 71 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC--BCCC-----------EEECCCSSCEEEEEECCGGGCSEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC--cEEE-----------EEEccccCCeEEEEecCCCcCCEEE
Confidence 33478999999999999999999999999998743110 0111 123477788999999874 89999
Q ss_pred EeeccccccCCCCEEEEEECCCCc--EEEEeccCCCceeEEEEcCC--CCeEEEEecCCCCCCCCeEEEEeCCCe-eEEE
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYERNGL-ERSS 264 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~--l~~~~e~~~~~v~slawsPd--G~~IAs~s~d~~~~~~~~V~~~e~nGl-~~~~ 264 (1196)
+++ .|++|||||..+|+ ...+...|...+.+++|+|+ |++||+++.| ..|++|+.... ....
T Consensus 72 -s~s------~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 72 -SCS------YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKENGTTSP 138 (297)
T ss_dssp -EEE------TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSSSCBCC
T ss_pred -EEc------CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCCCceee
Confidence 565 47999999997774 45566778899999999998 9999999986 47999995432 1111
Q ss_pred EEeccCCCCcEEEEEEccC-------------CCeeEEEEccCCcceEEEEEecCCE--EEEEEEEEEecCCcEEEEEcc
Q 000992 265 FDINEQIDSTVELLKWNCM-------------SDLLAAVVRFEEYDSVKICFFSNNH--WYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 265 f~l~~~~~~~V~~laWSpD-------------g~~LAs~~~d~~~~~V~lW~~~n~~--wylkq~l~~~~~~~~~v~Wsp 329 (1196)
..+.. +...|.+++|+|+ +++||+++.|+ +|+||+..+.. +.+...+..|......+.|+|
T Consensus 139 ~~~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~---~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp 214 (297)
T 2pm7_B 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN---LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214 (297)
T ss_dssp EEEEC-CSSCEEEEEECCCC------------CCEEEEEETTS---CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred eeeec-ccCccceEeecCCcccccccCCCCCCcceEEEEcCCC---cEEEEEEcCCCceEEEEEEecCCCCceEEEEECC
Confidence 22333 3567999999997 57999999999 99999987532 444455555544458899999
Q ss_pred CC--CceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCc-eeeeecCCCCEEEEEEecCCCCC
Q 000992 330 TK--PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM-YLFSLKFPTAVTEMAFYSKSSKN 406 (1196)
Q Consensus 330 ~~--~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm-~~~~l~~~~~V~~Vafspdg~~~ 406 (1196)
++ +..|+.++.||.+.+ |++ +....+... ....-.|+..|++++|+|+| +
T Consensus 215 ~~~~~~~las~s~D~~v~i----Wd~---------------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~ 267 (297)
T 2pm7_B 215 TVLLRSYMASVSQDRTCII----WTQ---------------------DNEQGPWKKTLLKEEKFPDVLWRASWSLSG--N 267 (297)
T ss_dssp CCSSSEEEEEEETTSCEEE----EEE---------------------SSTTSCCEEEESSSSCCSSCEEEEEECSSS--C
T ss_pred CCCCceEEEEEECCCcEEE----EEe---------------------CCCCCccceeeeecccCCCcEEEEEECCCC--C
Confidence 86 345666666665542 332 211000000 00001367889999999999 8
Q ss_pred EEEEEECCCcEEEEeCCC
Q 000992 407 CLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 407 ~lAs~~~dg~v~lw~~~~ 424 (1196)
.||+++.||+|+||+...
T Consensus 268 ~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 268 VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEEETTSCEEEEEECT
T ss_pred EEEEEcCCCcEEEEEECC
Confidence 999999999999999763
No 68
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=2.7e-25 Score=254.42 Aligned_cols=286 Identities=13% Similarity=0.108 Sum_probs=205.0
Q ss_pred CCCEEEEEEccC----CCEEEEEECCCcEEEEECCCC-eEEEeee-----ecCcEEEEEECCC----CCEEEEEeCCceE
Q 000992 75 GDSITAFDYLME----KEALIVGTSSGLLLLHSVDGN-ATEVVGR-----VEGGVRFISPSPD----GDLLGVTTGFGQI 140 (1196)
Q Consensus 75 ~~~v~~v~~spd----~~~La~as~dG~I~lw~~~~~-~~e~vg~-----~~~~I~~~awSPD----g~~LA~~s~d~tV 140 (1196)
.+.|.+++|+|+ ...+++++.+|.|++|+..++ .+..+.. |...|.+++|||| |++||+++.||+|
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i 97 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII 97 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence 468999999995 455666777889999999864 3333332 3477999999999 7799999999999
Q ss_pred EEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEe
Q 000992 141 LVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 141 ~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~ 218 (1196)
.+|+. ....+.. +.+|...+.+++|+| ||++|+ +++ .|++|+|||..+|+.....
T Consensus 98 ~v~d~~~~~~~~~----------------~~~~~~~i~~~~~~~~~~~~l~-s~~------~dg~i~iwd~~~~~~~~~~ 154 (366)
T 3k26_A 98 RIINPITMQCIKH----------------YVGHGNAINELKFHPRDPNLLL-SVS------KDHALRLWNIQTDTLVAIF 154 (366)
T ss_dssp EEECTTTCCEEEE----------------EESCCSCEEEEEECSSCTTEEE-EEE------TTSCEEEEETTTTEEEEEE
T ss_pred EEEEchhceEeee----------------ecCCCCcEEEEEECCCCCCEEE-EEe------CCCeEEEEEeecCeEEEEe
Confidence 99863 2333222 225667889999999 999999 565 4689999999899998887
Q ss_pred ---ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EE-------------------------EEEecc
Q 000992 219 ---ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RS-------------------------SFDINE 269 (1196)
Q Consensus 219 ---e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~-------------------------~f~l~~ 269 (1196)
.+|.+.+.+++|+|+|++|++++.++ .|.+|+..... .. .+....
T Consensus 155 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 155 GGVEGHRDEVLSADYDLLGEKIMSCGMDH------SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp CSTTSCSSCEEEEEECTTSSEEEEEETTS------CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred cccccccCceeEEEECCCCCEEEEecCCC------CEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 67899999999999999999999864 69999965321 00 000111
Q ss_pred CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE------------EEEEEEEEecCCcEEEEEccC--CCceE
Q 000992 270 QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW------------YLKYEIRYLRRDGIRFMWHPT--KPLQL 335 (1196)
Q Consensus 270 ~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w------------ylkq~l~~~~~~~~~v~Wsp~--~~~~L 335 (1196)
.+...|.+++|+ |++|++++.|+ .|++|++.+..- .....+..+......+.|+|+ +. .|
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l 302 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCEN---AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-ML 302 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSS---EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EE
T ss_pred CCcceEEEEEEc--CCEEEEEecCC---EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EE
Confidence 145679999999 78999999999 999999876421 222333333333366778877 54 35
Q ss_pred EEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cC--CCCEEEEEEecCCCCCEEEEEE
Q 000992 336 ICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KF--PTAVTEMAFYSKSSKNCLAAIL 412 (1196)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~--~~~V~~Vafspdg~~~~lAs~~ 412 (1196)
.+++.+|.+. +|++.......... ..+ .| ...|.+++|+|++ +.||+++
T Consensus 303 ~~~~~dg~i~-------------------------vwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~--~~l~s~~ 354 (366)
T 3k26_A 303 ALGNQVGKLY-------------------------VWDLEVEDPHKAKC-TTLTHHKCGAAIRQTSFSRDS--SILIAVC 354 (366)
T ss_dssp EEECTTSCEE-------------------------EEECCSSSGGGCEE-EEECCTTCCSCEEEEEECTTS--SEEEEEE
T ss_pred EEEecCCcEE-------------------------EEECCCCCCccccc-eEEcccccCCceEEEEeCCCC--CeEEEEe
Confidence 5555555543 33332211100011 122 23 6889999999999 8999999
Q ss_pred CCCcEEEEeCC
Q 000992 413 SDGCLCVVDLP 423 (1196)
Q Consensus 413 ~dg~v~lw~~~ 423 (1196)
.||+|++|++.
T Consensus 355 ~dg~i~iwd~~ 365 (366)
T 3k26_A 355 DDASIWRWDRL 365 (366)
T ss_dssp TTSEEEEEEC-
T ss_pred CCCEEEEEEec
Confidence 99999999975
No 69
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=4.3e-26 Score=260.05 Aligned_cols=254 Identities=13% Similarity=0.175 Sum_probs=193.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--d~~~La~as~dG~I 99 (1196)
.+.+++|++++..|++++.|+.|..||+ ..+... .+.+ +.+| .+.|.+++|+| +++.|++++.||+|
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~--~~~~~~-~~~~----l~gH----~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDV--RNGGQI-LIAD----LRGH----EGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEE--ETTEEE-EEEE----EECC----SSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEe--cCCCcE-EEEE----EcCC----CccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 7899999999999999999999999998 433211 1222 4555 36899999986 48999999999999
Q ss_pred EEEECCCCe---EEEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 100 LLHSVDGNA---TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 100 ~lw~~~~~~---~e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
++||..++. ......|.+.|.+++|||| |.+||+++.|++|++|+..-..... ... .+.+|..
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~-~~~-----------~~~~h~~ 151 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE-VKK-----------INNAHTI 151 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE-ECC-----------BTTSSSS
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc-eee-----------eeccccC
Confidence 999998753 3344457889999999998 8899999999999998632110000 001 1225666
Q ss_pred CeEEEEEccC-----------------CceEEEeeccccccCCCCEEEEEECCCC---cEEEEeccCCCceeEEEEcCCC
Q 000992 175 FKSPISWRGD-----------------GKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 175 ~v~~isWspD-----------------G~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~~e~~~~~v~slawsPdG 234 (1196)
.+.+++|+|+ |++|| +++ .|++|||||..++ ++..++++|.+.|.+++|+|+|
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs------~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA-SGG------CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCBEE-CCB------TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCS
T ss_pred CcceEEEccccCCccccccccccCccccceEE-Eec------CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCC
Confidence 7889999998 47898 565 4799999998544 4667788899999999999997
Q ss_pred ----CeEEEEecCCCCCCCCeEEEEeCCCeeEEE---EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-C
Q 000992 235 ----ANIAAVYDRKSENKCPSIVFYERNGLERSS---FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-N 306 (1196)
Q Consensus 235 ----~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~---f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n 306 (1196)
++||+++.| .+|++|+......+. ..+.. +...|.+++|||||++||+++.|+ +|+||+.. .
T Consensus 225 ~~~~~~las~s~D------~~v~iw~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~las~~~D~---~v~lw~~~~~ 294 (316)
T 3bg1_A 225 GLPTSTIASCSQD------GRVFIWTCDDASSNTWSPKLLHK-FNDVVWHVSWSITANILAVSGGDN---KVTLWKESVD 294 (316)
T ss_dssp SCSCCEEEEEETT------CEEEEEECSSTTCCCCBCCEEEE-CSSCEEEEEECTTTCCEEEEESSS---CEEEEEECTT
T ss_pred CCCCceEEEEcCC------CeEEEEEccCccccchhhhhhhc-CCCcEEEEEEcCCCCEEEEEcCCC---eEEEEEECCC
Confidence 899999986 479999864311000 01222 356899999999999999999999 99999976 5
Q ss_pred CEEEEEEEE
Q 000992 307 NHWYLKYEI 315 (1196)
Q Consensus 307 ~~wylkq~l 315 (1196)
.+|....++
T Consensus 295 g~~~~~~~~ 303 (316)
T 3bg1_A 295 GQWVCISDV 303 (316)
T ss_dssp SCEEEEEEC
T ss_pred CcEEEeeec
Confidence 677554443
No 70
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=3.1e-25 Score=262.58 Aligned_cols=315 Identities=13% Similarity=0.134 Sum_probs=207.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe------------EEEeeeec------------CcEEEEEECCCC--
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA------------TEVVGRVE------------GGVRFISPSPDG-- 128 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~------------~e~vg~~~------------~~I~~~awSPDg-- 128 (1196)
.+.|.+++|+|+|+.||+|+.||.|++|+..++. ...+..|. +.|.+++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 4789999999999999999999999999998754 33444566 889999999999
Q ss_pred CEEEEEeCCceEEEEeccCceeeeeeccccc-Cc-----cccc------------------cCc-cccCCCCeEEEEEcc
Q 000992 129 DLLGVTTGFGQILVMTHDWDLLYENPLEELA-EG-----FDVH------------------EPE-LSSSFSFKSPISWRG 183 (1196)
Q Consensus 129 ~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~-~~-----~~Vs------------------~tq-f~~~~~~v~~isWsp 183 (1196)
..|++++.|++|++|+..-............ .+ ..++ ... ..+|...|.+++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 8999999999999986321111000000000 00 0000 001 247888999999999
Q ss_pred CCceEEEeeccccccCCCCEEEEEECC-CCcEEEE-------eccCCCceeEEEEcCCC-CeEEEEecCCCCCCCCeEEE
Q 000992 184 DGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQAS-------SELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 184 DG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~-------~e~~~~~v~slawsPdG-~~IAs~s~d~~~~~~~~V~~ 254 (1196)
||++|| ++. |++|+|||.. .++.... ..+|.+.+.+++|+|+| ++||+++.|+ .|++
T Consensus 188 ~~~~l~-s~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg------~i~i 253 (447)
T 3dw8_B 188 DYETYL-SAD-------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG------TIRL 253 (447)
T ss_dssp TSSEEE-EEC-------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS------CEEE
T ss_pred CCCEEE-EeC-------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC------eEEE
Confidence 999999 552 5899999996 3445542 45788899999999999 9999999864 6999
Q ss_pred EeCC-Cee----EEEEEeccCCC-----------CcEEEEEEccCCCeeEEEEccCCcceEEEEEecC-CEEEEEEEEEE
Q 000992 255 YERN-GLE----RSSFDINEQID-----------STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN-NHWYLKYEIRY 317 (1196)
Q Consensus 255 ~e~n-Gl~----~~~f~l~~~~~-----------~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n-~~wylkq~l~~ 317 (1196)
|+.. +.. ... +..+.. ..|.+++|+|||++||+++. + +|++|++.+ ... .+.+..
T Consensus 254 wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~---~v~iwd~~~~~~~--~~~~~~ 325 (447)
T 3dw8_B 254 CDMRASALCDRHSKL--FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L---SVKVWDLNMENRP--VETYQV 325 (447)
T ss_dssp EETTTCSSSCTTCEE--ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S---EEEEEETTCCSSC--SCCEES
T ss_pred EECcCCccccceeeE--eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C---eEEEEeCCCCccc--cceeec
Confidence 9953 332 122 232211 27999999999999999988 7 899999975 331 123333
Q ss_pred ecCC---------------cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCE--EE----Eee---
Q 000992 318 LRRD---------------GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK--IL----VTP--- 373 (1196)
Q Consensus 318 ~~~~---------------~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~--l~----lt~--- 373 (1196)
+... ...+.|+|++.. |+.++.+|.+. .|++. . +......+.. .+ ..+
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~dg~v~----iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~ 397 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYNNFFR----MFDRN--T-KRDITLEASRENNKPRTVLKPRKV 397 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECSTTEEE----EEETT--T-CCEEEEECCSTTCCTTCBCCCCCE
T ss_pred cccccccccccccccccccceEEEECCCCCE-EEEeccCCEEE----EEEcC--C-CcceeeeecccccccccccCCccc
Confidence 2210 123899999875 67777788775 44442 1 1111111100 00 000
Q ss_pred -ccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 374 -LSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 374 -l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
......+.......+.+...|.+++|+|++ +.||+++.|+ +.+|..
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~--~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 398 CASGKRKKDEISVDSLDFNKKILHTAWHPKE--NIIAVATTNN-LYIFQD 444 (447)
T ss_dssp ECSSCCCTTCEEGGGCCTTSCCCEEEECSSS--SEEEEECSSC-EEEEEC
T ss_pred cccCCcccccccccccccCCceeEEEECCCC--CEEEEEecce-eeeecc
Confidence 000001111222234567789999999999 8999997775 777764
No 71
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.94 E-value=8.9e-25 Score=276.21 Aligned_cols=302 Identities=15% Similarity=0.151 Sum_probs=215.3
Q ss_pred eeeecCcEEEEEECCCC-CEEEEEeCCceEEEEeccCc-eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 112 VGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWD-LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
+..|.+.|++++|+|++ ++||+++.|++|++|+..-+ ....... ..+.+|...|.+++|+|||++|+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~-----------~~~~~h~~~v~~v~~s~~g~~l~ 446 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQ-----------RRLTGHSHFVEDVVLSSDGQFAL 446 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEE-----------EEEECCSSCEEEEEECTTSSEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccc-----------ceecCCCCcEEEEEECCCCCEEE
Confidence 44579999999999985 79999999999999964211 1111111 12347788899999999999999
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN- 268 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~- 268 (1196)
+++ .|++|||||..+|+....+.+|.+.|.+++|+|+|++|++++.|+ +|++|+..+.....+...
T Consensus 447 -sgs------~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~~~~~~~~~~~ 513 (694)
T 3dm0_A 447 -SGS------WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR------TIKLWNTLGECKYTISEGG 513 (694)
T ss_dssp -EEE------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSCEEEEECSST
T ss_pred -EEe------CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC------EEEEEECCCCcceeeccCC
Confidence 565 469999999989999999999999999999999999999999974 699999766443222111
Q ss_pred cCCCCcEEEEEEccCC--CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 269 EQIDSTVELLKWNCMS--DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 269 ~~~~~~V~~laWSpDg--~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
..+...|.+++|+|++ ..|++++.|+ +|++|++.+.. +...+..|.....++.|+|++.. |..++.+|.+.
T Consensus 514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~---~v~vwd~~~~~--~~~~~~~h~~~v~~v~~spdg~~-l~sg~~Dg~i~- 586 (694)
T 3dm0_A 514 EGHRDWVSCVRFSPNTLQPTIVSASWDK---TVKVWNLSNCK--LRSTLAGHTGYVSTVAVSPDGSL-CASGGKDGVVL- 586 (694)
T ss_dssp TSCSSCEEEEEECSCSSSCEEEEEETTS---CEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSE-EEEEETTSBCE-
T ss_pred CCCCCcEEEEEEeCCCCcceEEEEeCCC---eEEEEECCCCc--EEEEEcCCCCCEEEEEEeCCCCE-EEEEeCCCeEE-
Confidence 2345679999999998 5799999999 99999998764 23444444444488999998864 66666666554
Q ss_pred EEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000992 347 YNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1196)
Q Consensus 347 ~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~ 426 (1196)
.|+ ++.. .+.+++.+...|.+++|||++ ..|+++ .|+.|++|++.+..
T Consensus 587 ---iwd---------------------~~~~-----~~~~~~~~~~~v~~~~~sp~~--~~l~~~-~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 587 ---LWD---------------------LAEG-----KKLYSLEANSVIHALCFSPNR--YWLCAA-TEHGIKIWDLESKS 634 (694)
T ss_dssp ---EEE---------------------TTTT-----EEEECCBCSSCEEEEEECSSS--SEEEEE-ETTEEEEEETTTTE
T ss_pred ---EEE---------------------CCCC-----ceEEEecCCCcEEEEEEcCCC--cEEEEE-cCCCEEEEECCCCC
Confidence 233 2211 112334456779999999998 677766 56679999998754
Q ss_pred ccccccCCceeeee-ec---c---cccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 427 MLEDLEGTEFVVEA-CI---S---ETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 427 ~~~~~~g~~~~~~~-~~---~---~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
....+..+...... .. . ..+...+.+++|+|||.+|++++.+ ..+.+|.+
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D--g~i~iW~i 691 (694)
T 3dm0_A 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD--GVIRVWGI 691 (694)
T ss_dssp EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT--SEEEEEEC
T ss_pred ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC--CeEEEEec
Confidence 44333221100000 00 0 0111247899999999999998876 68889986
No 72
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=6.6e-25 Score=255.54 Aligned_cols=303 Identities=11% Similarity=0.058 Sum_probs=209.6
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-------EEEeeeecCcEEEEEECCC----C---CEEEEEeCCceE
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-------TEVVGRVEGGVRFISPSPD----G---DLLGVTTGFGQI 140 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-------~e~vg~~~~~I~~~awSPD----g---~~LA~~s~d~tV 140 (1196)
.+.|.+++|+| +.|++++.||+|++|+..++. +..+..|...|.+++|+|| | ++||+++.|++|
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 46899999999 899999999999999998865 5555567899999999999 9 999999999999
Q ss_pred EEEecc-CceeeeeecccccCccccccCccccC-----CCCeEEEEEc----cCCce-EEEeeccccccCCCCEEEEEEC
Q 000992 141 LVMTHD-WDLLYENPLEELAEGFDVHEPELSSS-----FSFKSPISWR----GDGKY-FATLSEFCNSSKLHKRLKVWER 209 (1196)
Q Consensus 141 ~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~-----~~~v~~isWs----pDG~~-lAsvss~d~~~~~d~~irVWd~ 209 (1196)
.+|+.. ........+.. +..| ...+.+++|+ |||++ |+ +++ .++.|++||.
T Consensus 94 ~iw~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~-~~~------~dg~i~iwd~ 155 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEK-----------LDLLDSDMKKHSFWALKWGASNDRLLSHRLV-ATD------VKGTTYIWKF 155 (397)
T ss_dssp EEEEEEECTTTCCEEEEE-----------ECCSCTTGGGSCEEEEEEECCC----CEEEE-EEE------TTSCEEEEEE
T ss_pred EEEEccCCccccccccee-----------ecccccccCCCcEEEEEEeeccCCCCceEEE-EEe------CCCcEEEEeC
Confidence 998632 11100000111 1133 3678999999 99999 98 565 4689999998
Q ss_pred CC------CcEEE-----Ee-------ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccC
Q 000992 210 DS------GTLQA-----SS-------ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQ 270 (1196)
Q Consensus 210 ~~------G~l~~-----~~-------e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~ 270 (1196)
.+ ++... .+ ..+...+.+++|+|+| +|++++.+ ..|.+|+.. +.....+.....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN------GTVQISELSTLRPLYNFESQHS 228 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT------SEEEEEETTTTEEEEEEECCC-
T ss_pred CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC------CcEEEEECCCCceeEEEecccc
Confidence 66 55554 44 4477889999999999 99999875 479999964 444333322000
Q ss_pred C---CCcEEEEEEccCCCeeEEEEcc---CCcceEEEEEecCCEEEEEEEEEE-------------ecCCcEEEEEccCC
Q 000992 271 I---DSTVELLKWNCMSDLLAAVVRF---EEYDSVKICFFSNNHWYLKYEIRY-------------LRRDGIRFMWHPTK 331 (1196)
Q Consensus 271 ~---~~~V~~laWSpDg~~LAs~~~d---~~~~~V~lW~~~n~~wylkq~l~~-------------~~~~~~~v~Wsp~~ 331 (1196)
+ ...|.+++|+|||++||+++.| + .|++|++.+... ...+.. +......+.|+|++
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g---~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHDSNSFG---CITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETTEE---EEEEEETTTCCE--EEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred ccccCCccceEEECCCCCEEEEEecCCCCc---eEEEEECCCCcc--cceeccCcccccccccccccCCcEEEEEECCCC
Confidence 2 5679999999999999999999 7 899999987642 233433 33334889999988
Q ss_pred CceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC------CCCCceeeeecCCCCEEEEEEecCCC-
Q 000992 332 PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL------MPPPMYLFSLKFPTAVTEMAFYSKSS- 404 (1196)
Q Consensus 332 ~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~------vpppm~~~~l~~~~~V~~Vafspdg~- 404 (1196)
.. |.+++.+|.+. +|++. . +..+......... .+.......-.|...|.+++|+|+|.
T Consensus 304 ~~-l~~~~~dg~i~----iwd~~--~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~ 368 (397)
T 1sq9_A 304 ET-LCSAGWDGKLR----FWDVK--T--------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR 368 (397)
T ss_dssp SE-EEEEETTSEEE----EEETT--T--------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTS
T ss_pred CE-EEEEeCCCeEE----EEEcC--C--------CceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccc
Confidence 65 77777777665 34432 1 1111111100000 00000000001378999999999971
Q ss_pred -------CCEEEEEECCCcEEEEeCCC
Q 000992 405 -------KNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 405 -------~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.+.|++++.||+|++|++.+
T Consensus 369 ~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 369 SGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp BSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ccccccccceEEEecCCCcEEEEEcCC
Confidence 14899999999999999864
No 73
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=5.5e-25 Score=248.32 Aligned_cols=295 Identities=12% Similarity=0.056 Sum_probs=191.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCC-----eEEEeeeecCcEEEEEECC--CCCEEEEEeCCceEEEEeccC
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-----ATEVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~-----~~e~vg~~~~~I~~~awSP--Dg~~LA~~s~d~tV~l~~~~~ 147 (1196)
.+.|.+++|+|+++.|++++.||+|++||..++ ....+..|.+.|.+++|+| ||++||+++.|++|++|+..-
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 368999999999999999999999999999864 2234455789999999999 799999999999999987432
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccC--CceEEEeeccccccCCCCEEEEEECCCCcEEEEec------
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE------ 219 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD--G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e------ 219 (1196)
..... .....+.+ ..+.+|...+.+++|+|+ |++|+ +++ .+++|+|||..+++......
T Consensus 91 ~~~~~----~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~-~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 91 DQEEC----SGRRWNKL--CTLNDSKGSLYSVKFAPAHLGLKLA-CLG------NDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp TSCTT----SSCSEEEE--EEECCCSSCEEEEEECCGGGCSEEE-EEE------TTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred Ccccc----cccCccee--eeecccCCceeEEEEcCCCCCcEEE-Eec------CCCcEEEecCCChHHhcccccccccc
Confidence 10000 00000000 123356778999999999 99999 565 46899999987776443221
Q ss_pred -------cCCCceeEEEEcCC---CCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCC----
Q 000992 220 -------LKAFMGAVLEWMPS---GANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMS---- 284 (1196)
Q Consensus 220 -------~~~~~v~slawsPd---G~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg---- 284 (1196)
++...+.+++|+|+ ++++|+++.+. .+.+|... +.......+.. +...|.+++|+|+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ------AIIYQRGKDGKLHVAAKLPG-HKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE------EEEEEECTTSCEEEEEECCC-CCSCEEEEEECCCSSCSS
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEecCCC------cEEEEccCCCceeeeeecCC-CCcceeEEEECCCCCCcc
Confidence 46677899999998 99999999863 46666543 33222223333 45689999999999
Q ss_pred CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecC--CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEE
Q 000992 285 DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTAL 362 (1196)
Q Consensus 285 ~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~ 362 (1196)
++||+++.|+ +|++|++.+... ....... ......+++.... ... +.
T Consensus 231 ~~l~s~~~dg---~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~--~~------------------- 279 (351)
T 3f3f_A 231 QLIATGCKDG---RIRIFKITEKLS----PLASEESLTNSNMFDNSADVDM---DAQ--GR------------------- 279 (351)
T ss_dssp EEEEEEETTS---CEEEEEEEECC--------------------------------------------------------
T ss_pred eEEEEEcCCC---eEEEEeCCCCcC----ccccCCcccceeccCCCccccc---ccc--cc-------------------
Confidence 8999999999 999999876421 1111000 0011111111110 000 00
Q ss_pred EEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 363 VIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 363 viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
.++...... ..+...++.....+ .|...|++++|+|++ +.||+++.||+|++|++.+.
T Consensus 280 -~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 280 -SDSNTEEKA--ELQSNLQVELLSEHDDHNGEVWSVSWNLTG--TILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp --------------CCSEEEEEEEEECTTSSCEEEEEECSSS--CCEEEEETTSCEEEEEECTT
T ss_pred -cccccceee--eecccccccEEEEEecccccEEEEEEcCCC--CEEEEecCCCcEEEEecCcC
Confidence 000000000 00111111122333 378899999999999 89999999999999999864
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.94 E-value=1.9e-23 Score=249.57 Aligned_cols=309 Identities=11% Similarity=0.052 Sum_probs=217.3
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-Cceeeeeec
Q 000992 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPL 155 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l 155 (1196)
+.++.| +++.|++|+.||+|++||..+++.. ....|.++|.+++|+||+ .|++++.||+|++|+.. ...+.
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---- 197 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---- 197 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE----
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE----
Confidence 455555 6789999999999999999887653 555679999999999998 99999999999998732 22221
Q ss_pred ccccCccccccCccccCCCCeEEEEEc--cCCceEEEeeccccccCCCCEEEEEECCCCcE-------------------
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWR--GDGKYFATLSEFCNSSKLHKRLKVWERDSGTL------------------- 214 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWs--pDG~~lAsvss~d~~~~~d~~irVWd~~~G~l------------------- 214 (1196)
.|.+|.+.+.+++|+ +||.+|+ +++ .|++|++||..++..
T Consensus 198 ------------~~~~h~~~v~~l~~~~~~~~~~l~-s~s------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (464)
T 3v7d_B 198 ------------VFEGHNSTVRCLDIVEYKNIKYIV-TGS------RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 258 (464)
T ss_dssp ------------EECCCSSCEEEEEEEESSSCEEEE-EEE------TTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred ------------EECCCCCccEEEEEecCCCCCEEE-EEc------CCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence 123566788999998 6889999 565 468999999976652
Q ss_pred ----EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000992 215 ----QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 215 ----~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs 289 (1196)
.....+|...+.++ +|+|++|++++.|+ .|++|+.. +.... .+.. +...|.+++|+|||+.|++
T Consensus 259 ~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~------~i~vwd~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 259 NPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN------TLIVWDVAQMKCLY--ILSG-HTDRIYSTIYDHERKRCIS 327 (464)
T ss_dssp CTTEEEEECCCSSCEEEE--EEETTEEEEEETTS------CEEEEETTTTEEEE--EECC-CSSCEEEEEEETTTTEEEE
T ss_pred CeEEEEEccCccceEEEE--cCCCCEEEEEeCCC------eEEEEECCCCcEEE--EecC-CCCCEEEEEEcCCCCEEEE
Confidence 44566677766655 79999999999864 69999964 43332 2333 3568999999999999999
Q ss_pred EEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEE
Q 000992 290 VVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKI 369 (1196)
Q Consensus 290 ~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l 369 (1196)
++.|+ +|++|++.+.. ..+.+..+......+.|++ ..|..++.+|.+
T Consensus 328 g~~dg---~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v------------------------- 374 (464)
T 3v7d_B 328 ASMDT---TIRIWDLENGE--LMYTLQGHTALVGLLRLSD---KFLVSAAADGSI------------------------- 374 (464)
T ss_dssp EETTS---CEEEEETTTTE--EEEEECCCSSCEEEEEECS---SEEEEEETTSEE-------------------------
T ss_pred EeCCC---cEEEEECCCCc--EEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcE-------------------------
Confidence 99999 99999998765 2334443333336677763 335555555543
Q ss_pred EEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCc
Q 000992 370 LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGS 449 (1196)
Q Consensus 370 ~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 449 (1196)
++|++.. +.......+...+..++|+|++ +.+++++ ||+|++|++.+........ ..+...
T Consensus 375 ~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~-dg~i~iwd~~~g~~~~~~~-----------~~~~~~ 435 (464)
T 3v7d_B 375 RGWDAND-----YSRKFSYHHTNLSAITTFYVSD--NILVSGS-ENQFNIYNLRSGKLVHANI-----------LKDADQ 435 (464)
T ss_dssp EEEETTT-----CCEEEEEECTTCCCEEEEEECS--SEEEEEE-TTEEEEEETTTCCEEESCT-----------TTTCSE
T ss_pred EEEECCC-----CceeeeecCCCCccEEEEEeCC--CEEEEec-CCeEEEEECCCCcEEehhh-----------ccCCCc
Confidence 4444332 1112233456677889999999 8999987 9999999998754442110 123458
Q ss_pred EEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 450 VIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 450 v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+..++|+ ++.+++++.++ ..+.++.+
T Consensus 436 v~~v~~~-~~~l~~~~~~~--g~~~i~~l 461 (464)
T 3v7d_B 436 IWSVNFK-GKTLVAAVEKD--GQSFLEIL 461 (464)
T ss_dssp EEEEEEE-TTEEEEEEEET--TEEEEEEE
T ss_pred EEEEEec-CCEEEEEEEeC--CeEEEEEe
Confidence 9999998 44555555543 33444444
No 75
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=7.2e-25 Score=255.70 Aligned_cols=202 Identities=11% Similarity=0.026 Sum_probs=154.9
Q ss_pred CCCEEEEEEccCCCEEEEEE--CCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGT--SSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as--~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
.+.+..++|||||+.||+|+ .||+|+|||..+++.. .++ |.+.|.+++|||||++||+++.++.+++|......+.
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA 211 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCccee
Confidence 45799999999999998776 6799999999987664 444 5788999999999999999997766655544433322
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE----EEEeccCCCceeE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL----QASSELKAFMGAV 227 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l----~~~~e~~~~~v~s 227 (1196)
.... .+|...+.+++|+|||++++ +++.+.. ...++++|+...+.. .....++...|.+
T Consensus 212 ~~~~--------------~~~~~~v~~v~fspdg~~l~-~~s~d~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~ 274 (365)
T 4h5i_A 212 RKTD--------------FDKNWSLSKINFIADDTVLI-AASLKKG--KGIVLTKISIKSGNTSVLRSKQVTNRFKGITS 274 (365)
T ss_dssp EECC--------------CCTTEEEEEEEEEETTEEEE-EEEESSS--CCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred eeec--------------CCCCCCEEEEEEcCCCCEEE-EEecCCc--ceeEEeecccccceecceeeeeecCCCCCeEe
Confidence 2111 13455679999999999999 5654321 223789999755543 2345678888999
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
++|||||++||+|+.|. .|++|+. +|.... .+...|...|.+|+|||||++||+++.|+ +|+||++.
T Consensus 275 ~~~Spdg~~lasgs~D~------~V~iwd~~~~~~~~--~~~~gH~~~V~~v~fSpdg~~laS~S~D~---tvrvw~ip 342 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDN------SIALVKLKDLSMSK--IFKQAHSFAITEVTISPDSTYVASVSAAN---TIHIIKLP 342 (365)
T ss_dssp EEECTTSCEEEEEETTS------CEEEEETTTTEEEE--EETTSSSSCEEEEEECTTSCEEEEEETTS---EEEEEECC
T ss_pred EEECCCCCceEEEcCCC------EEEEEECCCCcEEE--EecCcccCCEEEEEECCCCCEEEEEeCCC---eEEEEEcC
Confidence 99999999999999874 5999995 444333 22223467899999999999999999999 99999985
No 76
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=4.1e-24 Score=253.23 Aligned_cols=277 Identities=13% Similarity=0.137 Sum_probs=198.6
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-Ee--eeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
++..|+||++ +.||+|. |++|+|||..++++. .. ..|.+.|++++|||||++||+|+.|++|++|+. ....+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 5777999986 5888876 999999999998654 22 345677999999999999999999999999873 2222222
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-CcEEEEeccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~l~~~~e~~~~~v~slaws 231 (1196)
+.+|...+.+++| |+.+|+ +++ .++++++||... .....++.+|...+..+.|+
T Consensus 185 ----------------~~~h~~~v~~~s~--~~~~l~-sgs------~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 185 ----------------MTSHSARVGSLSW--NSYILS-SGS------RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp ----------------ECCCSSCEEEEEE--ETTEEE-EEE------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred ----------------EeCCCCceEEEee--CCCEEE-EEe------CCCceeEeeecccceeeEEecccccceeeeeec
Confidence 2255667788777 567888 565 468999999854 45566778899999999999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEE-EEeccCCCCcEEEEEEccCCC-eeEEEE--ccCCcceEEEEEecC
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERN-GLERSS-FDINEQIDSTVELLKWNCMSD-LLAAVV--RFEEYDSVKICFFSN 306 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~-f~l~~~~~~~V~~laWSpDg~-~LAs~~--~d~~~~~V~lW~~~n 306 (1196)
|+|+++++++.|+ .|.+|+.. |..... ......+...|..++|+|++. +||+++ .|+ +|++|++.+
T Consensus 240 ~~g~~l~s~~~D~------~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~---~I~iwd~~t 310 (420)
T 4gga_A 240 PDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR---HIRIWNVCS 310 (420)
T ss_dssp TTSSEEEEEETTS------CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC---EEEEEETTT
T ss_pred CCCCeeeeeeccc------cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC---EEEEEeCCc
Confidence 9999999999864 59999853 211100 001123456799999999765 555543 567 999999998
Q ss_pred CEEEEEEEEEEecCCcEEEEEccCCCceEEEEe--cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 307 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT--LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 307 ~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~--~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
... ...+.. ......+.|+|++.. +.+.+ .+|. |++|++.. ...
T Consensus 311 ~~~--~~~~~~-~~~v~~~~~~~~~~~-lv~~sg~~d~~-------------------------I~iwd~~~-----~~~ 356 (420)
T 4gga_A 311 GAC--LSAVDA-HSQVCSILWSPHYKE-LISGHGFAQNQ-------------------------LVIWKYPT-----MAK 356 (420)
T ss_dssp TEE--EEEEEC-SSCEEEEEEETTTTE-EEEEECTTTCC-------------------------EEEEETTT-----CCE
T ss_pred ccc--ceeecc-ccceeeeeecCCCCe-EEEEEecCCCE-------------------------EEEEECCC-----CcE
Confidence 753 222322 123377889998875 44433 2333 33443321 112
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 385 ~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
..++ .|.+.|++|+||||| ++||+++.|++|+||++...
T Consensus 357 v~~l~gH~~~V~~l~~spdg--~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 357 VAELKGHTSRVLSLTMSPDG--ATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEECCCSSCEEEEEECTTS--SCEEEEETTTEEEEECCSCS
T ss_pred EEEEcCCCCCEEEEEEcCCC--CEEEEEecCCeEEEEECCCC
Confidence 2344 488999999999999 89999999999999998754
No 77
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.94 E-value=4.9e-24 Score=248.18 Aligned_cols=285 Identities=14% Similarity=0.017 Sum_probs=211.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccccc--c-eeeccccccccccCCCCCCEEEEEEccC----C---CEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA--S-IKTAISAEIEHIDLEPGDSITAFDYLME----K---EALI 91 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~v~~v~~spd----~---~~La 91 (1196)
.+.+++|++ +.|++++.|+.|..|+. ..++.. . .+.+ +..+ ...|.+++|+|+ + +.|+
T Consensus 18 ~i~~~~~~~--~~l~s~~~dg~i~iw~~--~~~~~~~~~~~~~~----~~~h----~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCSGDGYLKVWDN--KLLDNENPKDKSYS----HFVH----KSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp CEEEEEECS--SEEEEEETTSEEEEEES--BCCTTCCGGGGEEE----EECC----TTCEEEEEEEEEEETTTEEEEEEE
T ss_pred CeEEEEecC--CeEEEEcCCCEEEEEEC--CCcccccCCCcceE----EecC----CCcEEEEEEecccccCCccccEEE
Confidence 789999988 89999999999999999 444310 0 0111 3333 468999999999 9 9999
Q ss_pred EEECCCcEEEEECCCCe------EEEeeee-----cCcEEEEEEC----CCCCE-EEEEeCCceEEEEeccC-------c
Q 000992 92 VGTSSGLLLLHSVDGNA------TEVVGRV-----EGGVRFISPS----PDGDL-LGVTTGFGQILVMTHDW-------D 148 (1196)
Q Consensus 92 ~as~dG~I~lw~~~~~~------~e~vg~~-----~~~I~~~awS----PDg~~-LA~~s~d~tV~l~~~~~-------d 148 (1196)
+++.||+|++|+..++. +.....| .+.|.+++|+ |||+. |++++.|++|.+|+..- .
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 99999999999998755 5555556 5899999999 99999 99999999999986321 1
Q ss_pred eeeeeecccccCccccccCcc-------ccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-
Q 000992 149 LLYENPLEELAEGFDVHEPEL-------SSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL- 220 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf-------~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~- 220 (1196)
.+. +.+. ..+ ..|...+.+++|+||| +|+ +++ .++.|+|||..+++....+..
T Consensus 166 ~~~---~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-~~~------~dg~i~i~d~~~~~~~~~~~~~ 226 (397)
T 1sq9_A 166 TLN---WSPT--------LELQGTVESPMTPSQFATSVDISERG-LIA-TGF------NNGTVQISELSTLRPLYNFESQ 226 (397)
T ss_dssp TTC---CCCE--------EEEEEEECCSSSSCCCCCEEEECTTS-EEE-EEC------TTSEEEEEETTTTEEEEEEECC
T ss_pred eee---ccCc--------ceeeeeeccccCCCCCceEEEECCCc-eEE-EEe------CCCcEEEEECCCCceeEEEecc
Confidence 111 0000 011 2356778999999999 888 565 468999999988999999888
Q ss_pred --C---CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccC------------CCCcEEEEEEcc
Q 000992 221 --K---AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQ------------IDSTVELLKWNC 282 (1196)
Q Consensus 221 --~---~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~------------~~~~V~~laWSp 282 (1196)
| .+.+.+++|+|+|++||+++.+.. ...|.+|+. ++..... +..+ +...|.+++|+|
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~---~g~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 301 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNS---FGCITLYETEFGERIGS--LSVPTHSSQASLGEFAHSSWVMSLSFND 301 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEEETT---EEEEEEEETTTCCEEEE--ECBC--------CCBSBSSCEEEEEECS
T ss_pred ccccccCCccceEEECCCCCEEEEEecCCC---CceEEEEECCCCcccce--eccCcccccccccccccCCcEEEEEECC
Confidence 8 889999999999999999988510 146999995 4544433 3321 456899999999
Q ss_pred CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE------Ee---------------cCCcEEEEEccCCC---------
Q 000992 283 MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR------YL---------------RRDGIRFMWHPTKP--------- 332 (1196)
Q Consensus 283 Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~------~~---------------~~~~~~v~Wsp~~~--------- 332 (1196)
||++||+++.|+ +|++|++.+... ...+. .+ ......+.|+|++.
T Consensus 302 ~~~~l~~~~~dg---~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 302 SGETLCSAGWDG---KLRFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp SSSEEEEEETTS---EEEEEETTTTEE--EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred CCCEEEEEeCCC---eEEEEEcCCCce--eEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 999999999999 999999988653 34444 22 23348899999973
Q ss_pred ceEEEEecCCcEEEE
Q 000992 333 LQLICWTLDGQITTY 347 (1196)
Q Consensus 333 ~~L~~~~~~g~~~~~ 347 (1196)
..|..++.+|.+.++
T Consensus 377 ~~l~s~~~dg~i~iw 391 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWF 391 (397)
T ss_dssp CEEEEEETTTEEEEE
T ss_pred ceEEEecCCCcEEEE
Confidence 457777777776543
No 78
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=1.5e-24 Score=252.41 Aligned_cols=274 Identities=13% Similarity=0.093 Sum_probs=200.4
Q ss_pred ceeEEeeecCC-CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQ-NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~-~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp-d~~~La~as~dG~I 99 (1196)
.+.+++|.+++ ..|++++.|+.|..|+. ..+.....+. +.++ .+.|.+++|+| +++.|++++.||+|
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~-----~~~h----~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDY--DVQNKTSFIQ-----GMGP----GDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEET--TSTTCEEEEC-----CCST----TCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeC--CCcccceeee-----cCCc----CCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 78999999998 89999999999999999 4443321111 1122 46899999999 78999999999999
Q ss_pred EEEECCCCeEEEeee---ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVGR---VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~---~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
++||..++.+..... +...|.+++|||||+.||+++.|++|.+|+....++... .+|...+
T Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----------------~~h~~~v 207 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKE----------------KLHKAKV 207 (383)
T ss_dssp EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEE----------------ECSSSCE
T ss_pred EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEe----------------ccCCCcE
Confidence 999999876654332 247799999999999999999999999997644333222 2456788
Q ss_pred EEEEEccCCc-eEEEeeccccccCCCCEEEEEECCC----CcEEEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCCCC
Q 000992 177 SPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDS----GTLQASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 177 ~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~----G~l~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~ 250 (1196)
.+++|+|||+ +|+ +++ .|++|+|||..+ +.+.... +|.+.+.+++|+| +|++||+++.| .
T Consensus 208 ~~~~~~~~~~~~l~-s~~------~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d------~ 273 (383)
T 3ei3_B 208 THAEFNPRCDWLMA-TSS------VDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQR------N 273 (383)
T ss_dssp EEEEECSSCTTEEE-EEE------TTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESS------S
T ss_pred EEEEECCCCCCEEE-EEe------CCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCC------C
Confidence 9999999999 788 565 478999999976 6777776 5888999999999 99999999986 4
Q ss_pred eEEEEeCC-CeeEEEEEecc----CC----------CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEE
Q 000992 251 SIVFYERN-GLERSSFDINE----QI----------DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI 315 (1196)
Q Consensus 251 ~V~~~e~n-Gl~~~~f~l~~----~~----------~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l 315 (1196)
.|++|+.. +.....+.... .+ ...+..++|+|||++ +++.|+ +|++|++.+... .+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~---~i~iwd~~~~~~--~~~l 346 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKR---TIDIYDANSGGL--VHQL 346 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCC---CEEEEETTTCCE--EEEE
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCC---eEEEEecCCCce--eeee
Confidence 79999954 33222222110 01 123444566666655 555677 899999987653 3444
Q ss_pred EEec-CCc-EEEEEccCCCceEEEEecCCcEE
Q 000992 316 RYLR-RDG-IRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 316 ~~~~-~~~-~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
..+. ... ..+.|+|++.. |..++ +|.+.
T Consensus 347 ~~~~~~~~~~~~~~s~~g~~-l~s~s-d~~i~ 376 (383)
T 3ei3_B 347 RDPNAAGIISLNKFSPTGDV-LASGM-GFNIL 376 (383)
T ss_dssp CBTTBCSCCCEEEECTTSSE-EEEEE-TTEEE
T ss_pred cCCCCCceEEEEEEecCccE-EEEec-CCcEE
Confidence 4322 233 55699998875 55554 66654
No 79
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=6.4e-25 Score=250.33 Aligned_cols=255 Identities=13% Similarity=0.123 Sum_probs=180.7
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc--CCceEE
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--DGKYFA 189 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp--DG~~lA 189 (1196)
...|.+.|++++|||||++||+++.|++|++|+..-.. ...+. .+.+|.+.|.+++|+| +|++||
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--~~~~~-----------~l~gH~~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--QILIA-----------DLRGHEGPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE--EEEEE-----------EEECCSSCEEEEEECCGGGSSCEE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--cEEEE-----------EEcCCCccEEEEEeCCCCCCCEEE
Confidence 33478999999999999999999999999998632110 01111 2336778899999986 499999
Q ss_pred EeeccccccCCCCEEEEEECCCCc--EEEEeccCCCceeEEEEcCC--CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~--l~~~~e~~~~~v~slawsPd--G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f 265 (1196)
+++ .|++|+|||..+|+ ...++.+|.+.+.+++|+|+ |.+||+++.|+ .|++|+..+...-..
T Consensus 76 -s~s------~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 76 -SCS------YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEV 142 (316)
T ss_dssp -EEE------TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEE
T ss_pred -EEE------CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCcce
Confidence 565 46999999997774 56677789999999999998 88999999874 699999654211110
Q ss_pred -EeccCCCCcEEEEEEccC-----------------CCeeEEEEccCCcceEEEEEecC-CEEEEEEEEEEecCCcEEEE
Q 000992 266 -DINEQIDSTVELLKWNCM-----------------SDLLAAVVRFEEYDSVKICFFSN-NHWYLKYEIRYLRRDGIRFM 326 (1196)
Q Consensus 266 -~l~~~~~~~V~~laWSpD-----------------g~~LAs~~~d~~~~~V~lW~~~n-~~wylkq~l~~~~~~~~~v~ 326 (1196)
.....+...|..++|+|+ +++||+++.|+ +|+||+... ..|...+.+..|......+.
T Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~---~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN---LIKLWKEEEDGQWKEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS---BCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC---eEEEEEeCCCCccceeeecccCCCceEEEE
Confidence 111234567999999998 57999999999 999999863 34544455555444458899
Q ss_pred EccCCC---ceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecC
Q 000992 327 WHPTKP---LQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSK 402 (1196)
Q Consensus 327 Wsp~~~---~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspd 402 (1196)
|+|++. ..|+.++.||. +++|.+....... .....+ .|.+.|++|+|+|+
T Consensus 220 ~sp~~~~~~~~las~s~D~~-------------------------v~iw~~~~~~~~~-~~~~~~~~~~~~v~~v~~sp~ 273 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGR-------------------------VFIWTCDDASSNT-WSPKLLHKFNDVVWHVSWSIT 273 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCE-------------------------EEEEECSSTTCCC-CBCCEEEECSSCEEEEEECTT
T ss_pred ecCCCCCCCceEEEEcCCCe-------------------------EEEEEccCccccc-hhhhhhhcCCCcEEEEEEcCC
Confidence 999862 34555555554 4444433210000 000112 47889999999999
Q ss_pred CCCCEEEEEECCCcEEEEeCC
Q 000992 403 SSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 403 g~~~~lAs~~~dg~v~lw~~~ 423 (1196)
| +.||+++.||+|++|+..
T Consensus 274 g--~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 274 A--NILAVSGGDNKVTLWKES 292 (316)
T ss_dssp T--CCEEEEESSSCEEEEEEC
T ss_pred C--CEEEEEcCCCeEEEEEEC
Confidence 9 899999999999999975
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=5.7e-24 Score=250.22 Aligned_cols=278 Identities=12% Similarity=0.139 Sum_probs=201.8
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-Cceeeee
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYEN 153 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~ 153 (1196)
.+.+++|++ +.+++++.||+|++||..+++.. ....|.+.|.+++|||||++||+++.||+|.+|+.. ...+..
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~- 171 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT- 171 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE-
Confidence 466688886 45778889999999999987654 233367889999999999999999999999998732 222222
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsP 232 (1196)
+.+|...+.+++| ++.+|+ +++ .+++|++||.. .+.......+|.+.+.+++|+|
T Consensus 172 ---------------~~~~~~~v~~~~~--~~~~l~-~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 227 (401)
T 4aez_A 172 ---------------MAGHQARVGCLSW--NRHVLS-SGS------RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227 (401)
T ss_dssp ---------------ECCCSSCEEEEEE--ETTEEE-EEE------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred ---------------ecCCCCceEEEEE--CCCEEE-EEc------CCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC
Confidence 2256678899999 567888 565 46999999996 4677788888999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCe-eEEEE--ccCCcceEEEEEecCCE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDL-LAAVV--RFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~-LAs~~--~d~~~~~V~lW~~~n~~ 308 (1196)
+|++||+++.|+ .|++|+... ... +.+. .+...|.+++|+|+|.. +++++ .|+ +|++|++.+..
T Consensus 228 ~~~~l~s~~~d~------~v~iwd~~~~~~~--~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~---~i~i~d~~~~~ 295 (401)
T 4aez_A 228 DGLQLASGGNDN------VVQIWDARSSIPK--FTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDK---QIHFWNAATGA 295 (401)
T ss_dssp TSSEEEEEETTS------CEEEEETTCSSEE--EEEC-CCSSCCCEEEECTTSTTEEEEECCTTTC---EEEEEETTTCC
T ss_pred CCCEEEEEeCCC------eEEEccCCCCCcc--EEec-CCcceEEEEEECCCCCCEEEEecCCCCC---EEEEEECCCCC
Confidence 999999999864 699999653 222 2233 24567999999998865 45443 577 89999998765
Q ss_pred EEEEEEEEEecCCcEEEEEccCCCceEEEEe--cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceee
Q 000992 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWT--LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~--~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~ 386 (1196)
. ...+. +......+.|+|++.. +.+.+ .+|.+.++ +.. .+....+ .
T Consensus 296 ~--~~~~~-~~~~v~~~~~s~~~~~-l~~~~g~~dg~i~v~----~~~----------~~~~~~~--------------~ 343 (401)
T 4aez_A 296 R--VNTVD-AGSQVTSLIWSPHSKE-IMSTHGFPDNNLSIW----SYS----------SSGLTKQ--------------V 343 (401)
T ss_dssp E--EEEEE-CSSCEEEEEECSSSSE-EEEEECTTTCEEEEE----EEE----------TTEEEEE--------------E
T ss_pred E--EEEEe-CCCcEEEEEECCCCCe-EEEEeecCCCcEEEE----ecC----------CccceeE--------------E
Confidence 3 22332 1223388999999875 44533 45655433 221 1111111 1
Q ss_pred ee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCc
Q 000992 387 SL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1196)
Q Consensus 387 ~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~ 427 (1196)
.+ .|...|.+++|+|+| +.|++++.||+|++|++.+...
T Consensus 344 ~~~~h~~~v~~~~~s~dg--~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 344 DIPAHDTRVLYSALSPDG--RILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp EEECCSSCCCEEEECTTS--SEEEEECTTSEEEEEECCC---
T ss_pred EecCCCCCEEEEEECCCC--CEEEEEeCCCcEEEEECCCCcc
Confidence 12 377889999999999 8999999999999999986433
No 81
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.93 E-value=1e-23 Score=237.05 Aligned_cols=276 Identities=12% Similarity=0.089 Sum_probs=193.8
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-Ee--eeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
+...|+||+++ .||+|. |++|+|||..++++. +. ..|...|.+++|||||++||+|+.|++|++|+. ....+..
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 35679999986 777765 999999999987653 32 345678999999999999999999999999873 2333322
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slaws 231 (1196)
.. +|...+. ++++++.+++ +++ .++.+++|+...+ ....+..+|...+..++|+
T Consensus 105 ~~----------------~h~~~~~--~~~~~~~~l~-s~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 105 MT----------------SHSARVG--SLSWNSYILS-SGS------RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EE----------------CCSSCEE--EEEEETTEEE-EEE------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred ec----------------CccceEE--EeecCCCEEE-EEe------cCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 22 3444444 5666778888 565 4689999998654 4556778899999999999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEE-EeccCCCCcEEEEEEccCCCeeE---EEEccCCcceEEEEEecC
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERN-GLERSSF-DINEQIDSTVELLKWNCMSDLLA---AVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f-~l~~~~~~~V~~laWSpDg~~LA---s~~~d~~~~~V~lW~~~n 306 (1196)
|+|++|++++.|+ .|++|+.. |...... .....+...|..++|+|++..+. +++.++ +|++|+...
T Consensus 160 ~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~i~lwd~~~ 230 (318)
T 4ggc_A 160 PDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR---HIRIWNVCS 230 (318)
T ss_dssp TTSSEEEEEETTS------CEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTC---EEEEEETTT
T ss_pred CCCCEEEEEecCc------ceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCC---EEEEEeccc
Confidence 9999999999864 69999853 2211100 01122346799999999987654 334445 899999887
Q ss_pred CEEEEEEEEEEecCCcEEEEEccCCCceEEEEe--cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 307 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT--LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 307 ~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~--~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
.... ....+......+.|+|.+.. +.+.+ .+|. |++|+++.. ..
T Consensus 231 ~~~~---~~~~~~~~v~~~~~~~~~~~-~~~~sg~~d~~-------------------------i~iwd~~~~-----~~ 276 (318)
T 4ggc_A 231 GACL---SAVDAHSQVCSILWSPHYKE-LISGHGFAQNQ-------------------------LVIWKYPTM-----AK 276 (318)
T ss_dssp CCEE---EEEECSSCEEEEEEETTTTE-EEEEECTTTCC-------------------------EEEEETTTC-----CE
T ss_pred cccc---ccccceeeeeeeeecccccc-eEEEEEcCCCE-------------------------EEEEECCCC-----cE
Confidence 5421 11122223377888888775 33333 2333 444443321 12
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 385 ~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
..++ .|.+.|++|+||||| ++||+++.||+|+||++.+
T Consensus 277 ~~~l~gH~~~V~~l~~spdg--~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 277 VAELKGHTSRVLSLTMSPDG--ATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEEECCCSSCEEEEEECTTS--SCEEEEETTTEEEEECCSC
T ss_pred EEEEcCCCCCEEEEEEcCCC--CEEEEEecCCeEEEEECCC
Confidence 2344 488999999999999 8999999999999999864
No 82
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.93 E-value=3.1e-24 Score=249.40 Aligned_cols=285 Identities=13% Similarity=0.045 Sum_probs=205.1
Q ss_pred CCCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeEE----Ee----------eeecCcEEEEEECC-CCCEEEEEeCCc
Q 000992 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDGNATE----VV----------GRVEGGVRFISPSP-DGDLLGVTTGFG 138 (1196)
Q Consensus 75 ~~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~~~~e----~v----------g~~~~~I~~~awSP-Dg~~LA~~s~d~ 138 (1196)
.+.|.+++|+| +++.|++++.||+|++||..++... .. ..|.+.|.+++|+| ++++|++++.|+
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 46899999999 9999999999999999999875321 11 13788999999999 888999999999
Q ss_pred eEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCC---ceEEEeeccccccCCCCEEEEEECCCCcE
Q 000992 139 QILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG---KYFATLSEFCNSSKLHKRLKVWERDSGTL 214 (1196)
Q Consensus 139 tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG---~~lAsvss~d~~~~~d~~irVWd~~~G~l 214 (1196)
+|.+|+.. ...+.... +...+..++|+|++ .+++ +++ .++.|++||..+++.
T Consensus 123 ~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFN-----------------FEETVYSHHMSPVSTKHCLVA-VGT------RGPKVQLCDLKSGSC 178 (408)
T ss_dssp EEEEEETTTTEEEEEEE-----------------CSSCEEEEEECSSCSSCCEEE-EEE------SSSSEEEEESSSSCC
T ss_pred eEEEeeCCCCccceecc-----------------CCCceeeeEeecCCCCCcEEE-EEc------CCCeEEEEeCCCcce
Confidence 99999733 22222221 22456899999854 4888 565 468999999989999
Q ss_pred EEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec--------------cCCCCcEEEEE
Q 000992 215 QASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--------------EQIDSTVELLK 279 (1196)
Q Consensus 215 ~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~--------------~~~~~~V~~la 279 (1196)
...+..|.+.+.+++|+|+|+ ++|+++.++ .|++|+..........+. ..+...|.+++
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 999999999999999999999 588988864 699999642211101110 12356799999
Q ss_pred EccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecC----CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeec
Q 000992 280 WNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR----DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV 355 (1196)
Q Consensus 280 WSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~----~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~ 355 (1196)
|+|||++|++++.|+ .|++|++.+..... ....... ....+.+.+ .
T Consensus 253 ~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------------------------~ 302 (408)
T 4a11_B 253 FTSDGLHLLTVGTDN---RMRLWNSSNGENTL--VNYGKVCNNSKKGLKFTVSC-------------------------G 302 (408)
T ss_dssp ECTTSSEEEEEETTS---CEEEEETTTCCBCC--CCCCCCCCCCSSCCCCEECC-------------------------S
T ss_pred EcCCCCEEEEecCCC---eEEEEECCCCccce--eccccccccccccceeEEec-------------------------C
Confidence 999999999999999 89999998753200 0000000 000011111 1
Q ss_pred CCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000992 356 MENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1196)
Q Consensus 356 ~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~ 426 (1196)
.+...+++.+++.+.+|++.... ....+ .|...|.+++|+|++ +.|++++.||+|++|++.+..
T Consensus 303 ~~~~~~~~~~~~~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 303 CSSEFVFVPYGSTIAVYTVYSGE-----QITMLKGHYKTVDCCVFQSNF--QELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp SSSCEEEEEETTEEEEEETTTCC-----EEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEEEECC--
T ss_pred CCceEEEEecCCEEEEEECcCCc-----ceeeeccCCCeEEEEEEcCCC--CEEEEECCCCeEEEEeCCCCC
Confidence 12234445566677888765422 22344 388899999999999 899999999999999998643
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.3e-25 Score=260.18 Aligned_cols=246 Identities=15% Similarity=0.130 Sum_probs=179.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.++++.|++++.|+.|..|+. ..+... .+.+ +.+| .+.|.+++|+|+++.|++++.||+|++
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~--~~~~~~-~~~~----~~~h----~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQ--DGNGWK-HART----FSDH----DKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEE--ETTEEE-ECCC----BCCC----SSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEc--cCCceE-EEEE----EecC----CceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 6888999999999999999999999999 443200 1111 3333 468999999999999999999999999
Q ss_pred EECCCCe----EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCcccc-CCCCe
Q 000992 102 HSVDGNA----TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSS-SFSFK 176 (1196)
Q Consensus 102 w~~~~~~----~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~-~~~~v 176 (1196)
||..++. ......|.+.|.+++|||||++||+++.|++|++|+.. ....+... ..+.+ |...+
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~--------~~~~~~h~~~v 149 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE----QENDWWVS--------KHLKRPLRSTI 149 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---------CCCC--------EEECSSCCSCE
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC----Ccccceee--------eEeecccCCCe
Confidence 9998765 44555578999999999999999999999999987532 11110000 01223 67789
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECC------------------CCcEEEEeccCCCceeEEEEcCCCCeEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD------------------SGTLQASSELKAFMGAVLEWMPSGANIA 238 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~------------------~G~l~~~~e~~~~~v~slawsPdG~~IA 238 (1196)
.+++|+|||++|| +++ .|++|+|||.. .|++...+ +|.+.+.+++|+|+|++||
T Consensus 150 ~~~~~~~~~~~l~-~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 150 LSLDWHPNNVLLA-AGC------ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp EEEEECTTSSEEE-EEE------SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred EEEEEcCCCCEEE-EEe------CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 9999999999999 565 46899999973 36677777 8889999999999999999
Q ss_pred EEecCCCCCCCCeEEEEeCCCeeE-E--EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 239 AVYDRKSENKCPSIVFYERNGLER-S--SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 239 s~s~d~~~~~~~~V~~~e~nGl~~-~--~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
+++.| ..|++|+...... . ...+.. +...|.+++|+|||++||+++.++ +.+|+.....|
T Consensus 222 ~~~~d------~~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~----~~~~~~~~~~~ 284 (377)
T 3dwl_C 222 YAGHD------SSVTIAYPSAPEQPPRALITVKL-SQLPLRSLLWANESAIVAAGYNYS----PILLQGNESGW 284 (377)
T ss_dssp EEETT------TEEC-CEECSTTSCEEECCCEEC-SSSCEEEEEEEETTEEEEEESSSS----EEEECCCC---
T ss_pred EEeCC------CcEEEEECCCCCCcceeeEeecC-CCCceEEEEEcCCCCEEEEEcCCc----EEEEEeCCCce
Confidence 99986 4799999543221 0 011222 356799999999999999998877 55777664444
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.93 E-value=2.1e-24 Score=255.51 Aligned_cols=255 Identities=9% Similarity=0.055 Sum_probs=185.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccc-------ccceeecccccccccc----CCC----CCCEEEEEEccC
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNE-------RASIKTAISAEIEHID----LEP----GDSITAFDYLME 86 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~-------~~~~~~~~~~~l~~~~----~~~----~~~v~~v~~spd 86 (1196)
.+.+++|+++++.|++++.|+.|..|+. ..+. ...++. ..+.+|. .+. .+.|.+++|+|+
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~--~~~~~~~~~~~~~~~~~---~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGGRVVIFQQ--EQENKIQSHSRGEYNVY---STFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTSEEEEEEE--CC-----CCCCCCEEEE---EEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEe--cCCCCCCcccccceeEe---cccccccccccccccccccCceEEEEEcCC
Confidence 8999999999999999999999999998 3332 111110 0133331 000 157999999999
Q ss_pred C--CEEEEEECCCcEEEEECCCCeEE-----------------------------------------EeeeecCcEEEEE
Q 000992 87 K--EALIVGTSSGLLLLHSVDGNATE-----------------------------------------VVGRVEGGVRFIS 123 (1196)
Q Consensus 87 ~--~~La~as~dG~I~lw~~~~~~~e-----------------------------------------~vg~~~~~I~~~a 123 (1196)
+ ..|++++.||+|++|+..++... ....|.+.|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 9 79999999999999998763321 1244788999999
Q ss_pred ECCCCCEEEEEeCCceEEEEecc--CceeeeeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccccCC
Q 000992 124 PSPDGDLLGVTTGFGQILVMTHD--WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKL 200 (1196)
Q Consensus 124 wSPDg~~LA~~s~d~tV~l~~~~--~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~ 200 (1196)
|||||++||++ .|++|++|+.. ...+...... ...+.+|...+.+++|+||| ++|| +++ .
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~~p~~~~~l~-s~~------~ 247 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK---------PANMEELTEVITAAEFHPNSCNTFV-YSS------S 247 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC---------CSSGGGCCCCEEEEEECSSCTTEEE-EEE------T
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecc---------cccccccCcceEEEEECCCCCcEEE-EEe------C
Confidence 99999999998 89999998743 1111111111 11244677889999999999 8999 565 4
Q ss_pred CCEEEEEECCCCcE----EEEeccCCC------------ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC--CeeE
Q 000992 201 HKRLKVWERDSGTL----QASSELKAF------------MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GLER 262 (1196)
Q Consensus 201 d~~irVWd~~~G~l----~~~~e~~~~------------~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n--Gl~~ 262 (1196)
|++|+|||..++++ ..+++.+.. .+.+++|+|+|++||+++. . .|++|+.. +...
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~------~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L------SVKVWDLNMENRPV 320 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S------EEEEEETTCCSSCS
T ss_pred CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C------eEEEEeCCCCcccc
Confidence 68999999988886 677777765 8999999999999999986 3 69999964 4333
Q ss_pred EEEEeccCCC---------C---cEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 263 SSFDINEQID---------S---TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 263 ~~f~l~~~~~---------~---~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
..+....... . .+..++|||||++||+++.|+ +|++|++.+..
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg---~v~iwd~~~~~ 375 (447)
T 3dw8_B 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN---FFRMFDRNTKR 375 (447)
T ss_dssp CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT---EEEEEETTTCC
T ss_pred ceeeccccccccccccccccccccceEEEECCCCCEEEEeccCC---EEEEEEcCCCc
Confidence 3232111000 0 134599999999999999999 99999998765
No 85
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.9e-23 Score=245.74 Aligned_cols=272 Identities=15% Similarity=0.167 Sum_probs=203.3
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 000992 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~ 104 (1196)
+++|+ ++.+++++.++.|+.|+. .++... .+ +. ....+.|.+++|+|+++.|++++.||.|++||.
T Consensus 98 ~~~~s--~~~l~~~~~d~~v~lw~~--~~~~~~-~~------~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 98 LLDWS--NLNVVAVALERNVYVWNA--DSGSVS-AL------AE---TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CEEEC--TTSEEEEEETTEEEEEET--TTCCEE-EE------EE---CCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEeec--CCCEEEEECCCeEEEeeC--CCCcEe-Ee------ee---cCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 35555 456788888999999999 554431 11 11 112468999999999999999999999999999
Q ss_pred CCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc
Q 000992 105 DGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG 183 (1196)
Q Consensus 105 ~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp 183 (1196)
.+++. .....|.+.|.+++| +++.|++++.|++|.+|+...... .. ..+.+|...+.+++|+|
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~---~~-----------~~~~~~~~~v~~~~~~~ 227 (401)
T 4aez_A 164 ESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH---QI-----------GTLQGHSSEVCGLAWRS 227 (401)
T ss_dssp TTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC---EE-----------EEEECCSSCEEEEEECT
T ss_pred cCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc---ee-----------eEEcCCCCCeeEEEEcC
Confidence 87654 455567899999999 567999999999999987431110 00 01225667889999999
Q ss_pred CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeC-CCee
Q 000992 184 DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER-NGLE 261 (1196)
Q Consensus 184 DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~-nGl~ 261 (1196)
||++|+ +++ .|++|+|||..+++...+..+|.+.+.+++|+|+|. ++++++... +..|.+|+. +|..
T Consensus 228 ~~~~l~-s~~------~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~----d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 228 DGLQLA-SGG------NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM----DKQIHFWNAATGAR 296 (401)
T ss_dssp TSSEEE-EEE------TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTT----TCEEEEEETTTCCE
T ss_pred CCCEEE-EEe------CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCC----CCEEEEEECCCCCE
Confidence 999999 565 468999999989999999988999999999999875 666654111 357999995 4444
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEE--ccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVV--RFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~--~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
...+ . +...|.+++|+|||+.|++++ .|+ .|++|++.+.......++..+......+.|+|++.. |.+++
T Consensus 297 ~~~~--~--~~~~v~~~~~s~~~~~l~~~~g~~dg---~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~-l~s~~ 368 (401)
T 4aez_A 297 VNTV--D--AGSQVTSLIWSPHSKEIMSTHGFPDN---NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRI-LSTAA 368 (401)
T ss_dssp EEEE--E--CSSCEEEEEECSSSSEEEEEECTTTC---EEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSE-EEEEC
T ss_pred EEEE--e--CCCcEEEEEECCCCCeEEEEeecCCC---cEEEEecCCccceeEEEecCCCCCEEEEEECCCCCE-EEEEe
Confidence 4333 2 235799999999999999965 677 899999998765444444444334488999998875 66666
Q ss_pred cCCcEE
Q 000992 340 LDGQIT 345 (1196)
Q Consensus 340 ~~g~~~ 345 (1196)
.+|.+.
T Consensus 369 ~dg~i~ 374 (401)
T 4aez_A 369 SDENLK 374 (401)
T ss_dssp TTSEEE
T ss_pred CCCcEE
Confidence 677654
No 86
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.93 E-value=3.2e-23 Score=247.60 Aligned_cols=324 Identities=12% Similarity=0.071 Sum_probs=225.0
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
+.++.+ +++.|++++.|+.|..||. .+++. +.+ +.+| .+.|.+++|+|++ .|++|+.||+|++|
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~--~~~~~---~~~----~~~h----~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDS--INKKF---LLQ----LSGH----DGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEET--TTTEE---EEE----ECCC----SSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEEC--CCCcE---EEE----EeCC----CcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 344455 5689999999999999998 44443 111 3334 4689999999998 99999999999999
Q ss_pred ECCCCeE-EEeeeecCcEEEEEEC--CCCCEEEEEeCCceEEEEeccC-ceeeeeeccccc-------CccccccCcccc
Q 000992 103 SVDGNAT-EVVGRVEGGVRFISPS--PDGDLLGVTTGFGQILVMTHDW-DLLYENPLEELA-------EGFDVHEPELSS 171 (1196)
Q Consensus 103 ~~~~~~~-e~vg~~~~~I~~~awS--PDg~~LA~~s~d~tV~l~~~~~-d~~~~~~l~~~~-------~~~~Vs~tqf~~ 171 (1196)
|..+++. .....|.+.|.+++|+ ||+.+|++++.|++|++|+..- ............ .........+.+
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 9998765 3555678999999998 6889999999999999987321 111110000000 000000112335
Q ss_pred CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
|...+.++ +++|.+++ +++ .|++|++||..++++..++.+|.+.+.+++|+|+|++|++++.|+ .
T Consensus 269 ~~~~v~~~--~~~~~~l~-~~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg------~ 333 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVV-SGS------YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT------T 333 (464)
T ss_dssp CSSCEEEE--EEETTEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS------C
T ss_pred ccceEEEE--cCCCCEEE-EEe------CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC------c
Confidence 66666665 78899999 565 468999999989999999999999999999999999999999864 6
Q ss_pred EEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEcc
Q 000992 252 IVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHP 329 (1196)
Q Consensus 252 V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp 329 (1196)
|++|+. +|..... +.. +...|..++|+ ++.|++++.|+ +|++|+..+... .+.++.... ..+.|+|
T Consensus 334 i~vwd~~~~~~~~~--~~~-h~~~v~~~~~~--~~~l~s~s~dg---~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~ 401 (464)
T 3v7d_B 334 IRIWDLENGELMYT--LQG-HTALVGLLRLS--DKFLVSAAADG---SIRGWDANDYSR----KFSYHHTNLSAITTFYV 401 (464)
T ss_dssp EEEEETTTTEEEEE--ECC-CSSCEEEEEEC--SSEEEEEETTS---EEEEEETTTCCE----EEEEECTTCCCEEEEEE
T ss_pred EEEEECCCCcEEEE--EeC-CCCcEEEEEEc--CCEEEEEeCCC---cEEEEECCCCce----eeeecCCCCccEEEEEe
Confidence 999995 5654433 333 45679999998 58999999999 999999987542 233333333 5567777
Q ss_pred CCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEE
Q 000992 330 TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLA 409 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lA 409 (1196)
++.. +..++ +| .+++|++..... .......+.+.|++|+|+.+ ..++
T Consensus 402 ~~~~-l~~~~-dg-------------------------~i~iwd~~~g~~---~~~~~~~~~~~v~~v~~~~~---~l~~ 448 (464)
T 3v7d_B 402 SDNI-LVSGS-EN-------------------------QFNIYNLRSGKL---VHANILKDADQIWSVNFKGK---TLVA 448 (464)
T ss_dssp CSSE-EEEEE-TT-------------------------EEEEEETTTCCE---EESCTTTTCSEEEEEEEETT---EEEE
T ss_pred CCCE-EEEec-CC-------------------------eEEEEECCCCcE---EehhhccCCCcEEEEEecCC---EEEE
Confidence 6653 33333 34 344444432110 00011246788999999833 4666
Q ss_pred EEECCCcEEEEeC
Q 000992 410 AILSDGCLCVVDL 422 (1196)
Q Consensus 410 s~~~dg~v~lw~~ 422 (1196)
+++.||.+.+|-+
T Consensus 449 ~~~~~g~~~i~~l 461 (464)
T 3v7d_B 449 AVEKDGQSFLEIL 461 (464)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEEeCCeEEEEEe
Confidence 7777777766654
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=1.7e-23 Score=239.55 Aligned_cols=297 Identities=11% Similarity=-0.012 Sum_probs=203.9
Q ss_pred EeeeecCcEEEEEECCC----CCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccC-
Q 000992 111 VVGRVEGGVRFISPSPD----GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD- 184 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPD----g~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD- 184 (1196)
+...|.+.|.+++|||+ ...++++++++.|.+|+.. ...+.....+... .|...+.+++|+||
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA-----------DADENFYTCAWTYDS 81 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS-----------CTTCCEEEEEEEECT
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc-----------CCCCcEEEEEeccCC
Confidence 34457899999999995 4455556667799999743 3333332222111 25567899999999
Q ss_pred ---CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCC-C
Q 000992 185 ---GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERN-G 259 (1196)
Q Consensus 185 ---G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~n-G 259 (1196)
|++|| +++ .+++|+|||..+|++...+.+|.+.+.+++|+| +|++||+++.|+ .|++|+.. |
T Consensus 82 ~~~~~~l~-~~~------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg------~i~iwd~~~~ 148 (366)
T 3k26_A 82 NTSHPLLA-VAG------SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH------ALRLWNIQTD 148 (366)
T ss_dssp TTCCEEEE-EEE------TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTTT
T ss_pred CCCCCEEE-Eec------CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCC------eEEEEEeecC
Confidence 77899 565 468999999989999999999999999999999 999999999864 69999964 4
Q ss_pred eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE-----------------------
Q 000992 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR----------------------- 316 (1196)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~----------------------- 316 (1196)
.....+.....+...|.+++|+|||+.|++++.|+ +|++|++.+.... +.+.
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH---SLKLWRINSKRMM--NAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS---CEEEEESCSHHHH--HHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred eEEEEecccccccCceeEEEECCCCCEEEEecCCC---CEEEEECCCCccc--cccceeEEecCCCCcccccceeeccCc
Confidence 33332211123457899999999999999999999 8999998754210 0000
Q ss_pred -----EecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC---------CCC
Q 000992 317 -----YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM---------PPP 382 (1196)
Q Consensus 317 -----~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v---------ppp 382 (1196)
.+......+.|+ + ..+.+++.+|. +++|+++.... ...
T Consensus 224 ~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~-------------------------i~~wd~~~~~~~~~~~~~~~~~~ 275 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--G-DLILSKSCENA-------------------------IVCWKPGKMEDDIDKIKPSESNV 275 (366)
T ss_dssp EEECSSCSSCCCEEEEE--T-TEEEEECSSSE-------------------------EEEEEESSTTCCGGGCCTTCCCE
T ss_pred cccccCCcceEEEEEEc--C-CEEEEEecCCE-------------------------EEEEeCCCccccccccccCCcch
Confidence 011112445555 1 23444444444 44444332111 001
Q ss_pred ceeeee-cCCCCEEEEEEecC--CCCCEEEEEECCCcEEEEeCCCCCccc----cccCCceeeeeecccccCCcEEEEEE
Q 000992 383 MYLFSL-KFPTAVTEMAFYSK--SSKNCLAAILSDGCLCVVDLPAPDMLE----DLEGTEFVVEACISETAFGSVIHLIW 455 (1196)
Q Consensus 383 m~~~~l-~~~~~V~~Vafspd--g~~~~lAs~~~dg~v~lw~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~v~~l~~ 455 (1196)
.....+ .|...|++++|+|+ + +.||+++.||.|++|++.+..... .+.++ .+...|..++|
T Consensus 276 ~~~~~~~~~~~~v~~~~~s~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~ 343 (366)
T 3k26_A 276 TILGRFDYSQCDIWYMRFSMDFWQ--KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH----------KCGAAIRQTSF 343 (366)
T ss_dssp EEEEEEECSSCCSSCCCCEECTTS--SEEEEECTTSCEEEEECCSSSGGGCEEEEECCT----------TCCSCEEEEEE
T ss_pred heeccccccCCcEEEEEEcCCCCC--cEEEEEecCCcEEEEECCCCCCccccceEEccc----------ccCCceEEEEe
Confidence 112233 37778999999999 8 899999999999999998654331 11111 12468999999
Q ss_pred ecCCeEEEEEecCCCCceEEEEe
Q 000992 456 LGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 456 ~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+|++++|++++.+ ..+.+|++
T Consensus 344 s~~~~~l~s~~~d--g~i~iwd~ 364 (366)
T 3k26_A 344 SRDSSILIAVCDD--ASIWRWDR 364 (366)
T ss_dssp CTTSSEEEEEETT--SEEEEEEC
T ss_pred CCCCCeEEEEeCC--CEEEEEEe
Confidence 9999999998875 57888875
No 88
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.93 E-value=1.5e-23 Score=239.34 Aligned_cols=284 Identities=10% Similarity=0.013 Sum_probs=203.2
Q ss_pred ceeEEeeecCCCEEEEE-eC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC---CCEEEEEE
Q 000992 22 ILQFSALDIEQNRLFFA-SS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME---KEALIVGT 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~-s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd---~~~La~as 94 (1196)
.+.+++|.+++..++++ +. |+.|..|++ ..++.. .+. ..++ .+.|.+++|+|+ ++.|++++
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~--~~~~~~-~~~-----~~~~----~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEI--QHGDLK-LLR-----EIEK----AKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEE--CSSSEE-EEE-----EEEE----SSCEEEEECTTCCTTTCCEEEEE
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeC--CCCccc-cee-----eecc----cCcEEEEEEcCCCCCCceEEEec
Confidence 78999999999766654 44 788999999 444331 111 1122 358999999999 69999999
Q ss_pred CCCcEEEEECCCCe--EEEeeeecCcEEEE------EECCCCCEEEEEeCCceEEEEecc-Cc-eeeeeecccccCcccc
Q 000992 95 SSGLLLLHSVDGNA--TEVVGRVEGGVRFI------SPSPDGDLLGVTTGFGQILVMTHD-WD-LLYENPLEELAEGFDV 164 (1196)
Q Consensus 95 ~dG~I~lw~~~~~~--~e~vg~~~~~I~~~------awSPDg~~LA~~s~d~tV~l~~~~-~d-~~~~~~l~~~~~~~~V 164 (1196)
.||+|++||..++. +.....|.+.|.++ +|||||+.|++++.|++|++|+.. .. ++.....+..
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------ 161 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG------ 161 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT------
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC------
Confidence 99999999998754 44555678999999 458999999999999999998632 21 2222221111
Q ss_pred ccCccccCCCCeEEEE----EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC---CCCeE
Q 000992 165 HEPELSSSFSFKSPIS----WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP---SGANI 237 (1196)
Q Consensus 165 s~tqf~~~~~~v~~is----WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP---dG~~I 237 (1196)
.+...+.+++ |+|||++|+ +++ .++.|++||..++++... ..+.+.+.+++|+| +|++|
T Consensus 162 ------~~~~~v~~~~~~~~~~~~~~~l~-~~~------~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 162 ------ENKRDCWTVAFGNAYNQEERVVC-AGY------DNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKL 227 (357)
T ss_dssp ------SCCCCEEEEEEECCCC-CCCEEE-EEE------TTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEE
T ss_pred ------CCCCceEEEEEEeccCCCCCEEE-EEc------cCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEE
Confidence 1123567887 899999999 565 468999999978877544 55788899999999 99999
Q ss_pred EEEecCCCCCCCCeEEEEeCCC-eeEEEEEec--cCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCC------
Q 000992 238 AAVYDRKSENKCPSIVFYERNG-LERSSFDIN--EQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNN------ 307 (1196)
Q Consensus 238 As~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~--~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~------ 307 (1196)
++++.+ ..|.+|+... .....+... ..+...|.+++|+|+|+ +||+++.|+ .|++|++.+.
T Consensus 228 ~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~ 298 (357)
T 3i2n_A 228 VATSLE------GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG---GLHLWKYEYPIQRSKK 298 (357)
T ss_dssp EEEEST------TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS---EEEEEEEECCSCC--C
T ss_pred EEECCC------CeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC---cEEEeecCCCcccccc
Confidence 999885 4799998532 111112111 13456899999999999 899999999 9999998743
Q ss_pred -----------EEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 308 -----------HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 308 -----------~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
.+.+...+..+......+.|+|++...+..++.+|.+.+
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 299 DSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp CTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred cCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence 222334444443344889999998873325666776653
No 89
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.5e-24 Score=251.54 Aligned_cols=317 Identities=11% Similarity=0.061 Sum_probs=215.6
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEeccccc---ccccceeeccccccc-cccCCCCCCEEEEEEccCCCEEEEEECC
Q 000992 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQ---NERASIKTAISAEIE-HIDLEPGDSITAFDYLMEKEALIVGTSS 96 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~---~~~~~~~~~~~~~l~-~~~~~~~~~v~~v~~spd~~~La~as~d 96 (1196)
.+.+++|.+ ++..|++++.|+.|..||. .. +.. .... +. .| .+.|.+++|+|+++.|++++.|
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~--~~~~~~~~-~~~~-----~~~~h----~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNL--KEIIVGEV-YSSS-----LTYDC----SSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEH--HHHHTTCC-CSCS-----EEEEC----SSCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeEC--cccccCcc-ccee-----eeccC----CCCEEEEEEeCCCCEEEEEeCC
Confidence 799999999 9999999999999999998 33 110 0000 11 12 4689999999999999999999
Q ss_pred CcEEEEECC---CCeE-EEeee------------ecCcEEEEE--ECCCCCEEEEEeCCceEEEEec-cCceeeeeeccc
Q 000992 97 GLLLLHSVD---GNAT-EVVGR------------VEGGVRFIS--PSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEE 157 (1196)
Q Consensus 97 G~I~lw~~~---~~~~-e~vg~------------~~~~I~~~a--wSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~ 157 (1196)
|+|++||.+ +++. ..... +...+.++. |+|||.+|++++.|++|++|+. ....+......
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~- 211 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS- 211 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC-
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC-
Confidence 999999984 3322 21111 245566666 7789999999999999999973 33433332221
Q ss_pred ccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEc----C
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWM----P 232 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slaws----P 232 (1196)
.|...+.+++|+|||++|+ +++ .|++|+|||..+|++..+.. ++...+.+++|+ |
T Consensus 212 -------------~h~~~v~~~~~s~~~~~l~-s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 212 -------------PRHGAVSSICIDEECCVLI-LGT------TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK 271 (437)
T ss_dssp -------------GGGCCEEEEEECTTSCEEE-EEE------TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT
T ss_pred -------------CCCCceEEEEECCCCCEEE-EEc------CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCC
Confidence 1456789999999999999 565 46899999998999988875 677789999665 5
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEecc-----------------------CCCCcEEEEEEccCCCeeE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINE-----------------------QIDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~-----------------------~~~~~V~~laWSpDg~~LA 288 (1196)
+|++||+++.| ..|++|+.. |.....+.-.. .+...|.+++|+ ++++|+
T Consensus 272 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~ 344 (437)
T 3gre_A 272 NSVIVVGGSSK------TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL 344 (437)
T ss_dssp TEEEEEEESTT------EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred CccEEEEEcCC------CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence 68899999886 469999964 55444443110 134568999999 889999
Q ss_pred EEEccCCcceEEEEEecCCEEEEEEEEEEecCCc---EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEc
Q 000992 289 AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVID 365 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viD 365 (1196)
+++.|+ +|++|++.+... .+.+..+.... ....+++.. .+.... +.. ..
T Consensus 345 s~~~d~---~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~--~~~----------~~ 396 (437)
T 3gre_A 345 TDEATS---SIVMFSLNELSS--SKAVISPSRFSDVFIPTQVTANL-----------TMLLRK--MKR----------TS 396 (437)
T ss_dssp EEGGGT---EEEEEETTCGGG--CEEEECC--CCCEEEEEEEETTE-----------EEEEEE--CC-------------
T ss_pred ecCCCC---eEEEEECCCccc--ceEEecccccCceEEEEEeecce-----------EEEEEe--ccc----------cc
Confidence 999999 999999987542 12222211010 111121111 000000 000 00
Q ss_pred CCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 366 GSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 366 g~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
+.. + . ....|.+.|++|+|++++.+.+|++++.||+|++|+
T Consensus 397 ~~~----------~----~-~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 397 THS----------V----D-DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------------------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccc----------c----C-cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 000 0 0 011378899999999993227999999999999995
No 90
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.8e-23 Score=240.37 Aligned_cols=248 Identities=15% Similarity=0.211 Sum_probs=192.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC--CCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME--KEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd--~~~La~as~dG~I 99 (1196)
.+.+++|++++..|++++.|+.|+.|++ ...... .+.+ +.+| .+.|.+++|+|+ ++.|++++.||+|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~--~~~~~~-~~~~----~~~h----~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEV--EGETHK-LIDT----LTGH----EGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEE--ETTEEE-EEEE----ECCC----SSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEec--CCCcce-eeeE----ecCC----CCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 7899999999999999999999999998 422221 1111 3333 468999999988 9999999999999
Q ss_pred EEEECCCCe---EEEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEeccCc-eeeeeecccccCccccccCccccCC
Q 000992 100 LLHSVDGNA---TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWD-LLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 100 ~lw~~~~~~---~e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
++||..+++ +.....|...|.+++|+|+ |++|++++.|++|++|+..-. ..... .+.+|.
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--------------~~~~~~ 147 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI--------------IIDAHA 147 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE--------------EEECCT
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE--------------EecCCC
Confidence 999999875 3344556889999999999 999999999999999873211 11111 122456
Q ss_pred CCeEEEEEcc-------------CCceEEEeeccccccCCCCEEEEEECCCCc----EEEEeccCCCceeEEEEcCC---
Q 000992 174 SFKSPISWRG-------------DGKYFATLSEFCNSSKLHKRLKVWERDSGT----LQASSELKAFMGAVLEWMPS--- 233 (1196)
Q Consensus 174 ~~v~~isWsp-------------DG~~lAsvss~d~~~~~d~~irVWd~~~G~----l~~~~e~~~~~v~slawsPd--- 233 (1196)
..+.+++|+| ||.+|+ +++ .+++|+|||..++. +...+.+|.+.+.+++|+|+
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~------~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFV-TGG------ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEE-EEE------TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred CceEEEEEcCccccccccccCCCCCCEEE-EEe------CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC
Confidence 7889999999 799999 565 46899999986554 55667789999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEe-c-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDI-N-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHW 309 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l-~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~w 309 (1196)
|++||+++.|+ .|++|+..... .....+ . ..+...|.+++|+|||++||+++.|+ .|++|++. ...|
T Consensus 221 ~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 221 RSYLASVSQDR------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLWKENLEGKW 291 (379)
T ss_dssp SEEEEEEETTS------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS---SEEEEEEEETTEE
T ss_pred CCeEEEEeCCC------EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC---cEEEEeCCCCCcc
Confidence 89999999864 69999965321 001112 2 22456799999999999999999999 89999987 4555
Q ss_pred E
Q 000992 310 Y 310 (1196)
Q Consensus 310 y 310 (1196)
.
T Consensus 292 ~ 292 (379)
T 3jrp_A 292 E 292 (379)
T ss_dssp E
T ss_pred c
Confidence 3
No 91
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=9.8e-24 Score=240.09 Aligned_cols=277 Identities=15% Similarity=0.105 Sum_probs=203.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe----EEEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEec-cCc
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA----TEVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTH-DWD 148 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~----~e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~-~~d 148 (1196)
.+.|.+++|+|+++.|++++.||+|++|+..++. ......|...|.+++|+|||+ +|++++.||+|.+|+. .-.
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 90 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence 4689999999999999999999999999998765 444445789999999999999 9999999999999864 322
Q ss_pred eeeeeecccccCccccccCcccc--CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC---------CcEEEE
Q 000992 149 LLYENPLEELAEGFDVHEPELSS--SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS---------GTLQAS 217 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~--~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~---------G~l~~~ 217 (1196)
... .+.+ |...+.+++|+| +.+|+ +++ .+++|++||..+ +++..+
T Consensus 91 ~~~----------------~~~~~~~~~~v~~l~~~~-~~~l~-s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 91 SFQ----------------ALTNNEANLGICRICKYG-DDKLI-AAS------WDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp SEE----------------ECBSCCCCSCEEEEEEET-TTEEE-EEE------TTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred ceE----------------eccccCCCCceEEEEeCC-CCEEE-EEc------CCCeEEEEcccccccccccccCCeeeE
Confidence 111 1224 677899999999 99999 565 469999999866 665555
Q ss_pred eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCC
Q 000992 218 SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEE 295 (1196)
Q Consensus 218 ~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~ 295 (1196)
.. +.+.+.+++|+|++ +++++.+ ..|.+|+... ..........++...|.+++|+| ||++|++++.|+
T Consensus 147 ~~-~~~~v~~~~~~~~~--l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg- 216 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSR--LIVGMNN------SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG- 216 (342)
T ss_dssp SS-SCCCEEEEEECSSE--EEEEEST------TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS-
T ss_pred Ee-eCCceEEEEecCCc--EEEEeCC------CeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC-
Confidence 55 77889999999999 7777775 4799999754 21100011223456799999999 999999999999
Q ss_pred cceEEEEEecCC--E--EEEEEEEEEecC---------CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEE
Q 000992 296 YDSVKICFFSNN--H--WYLKYEIRYLRR---------DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTAL 362 (1196)
Q Consensus 296 ~~~V~lW~~~n~--~--wylkq~l~~~~~---------~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~ 362 (1196)
.|++|+.... . ......+..+.. ....+.|+|++.. |.+++.+|.+. .|++.
T Consensus 217 --~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~----vwd~~-------- 281 (342)
T 1yfq_A 217 --RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIIS----CWNLQ-------- 281 (342)
T ss_dssp --EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEE----EEETT--------
T ss_pred --cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCE-EEEecCCceEE----EEcCc--------
Confidence 9999998654 0 011233443322 3378899998765 66666666654 33321
Q ss_pred EEcCCEEEEeeccccCCCCCceeeee-cC-CCCEEEEEEecCCCCCEEEEEECCCc-EEEEeC
Q 000992 363 VIDGSKILVTPLSLSLMPPPMYLFSL-KF-PTAVTEMAFYSKSSKNCLAAILSDGC-LCVVDL 422 (1196)
Q Consensus 363 viDg~~l~lt~l~~~~vpppm~~~~l-~~-~~~V~~Vafspdg~~~~lAs~~~dg~-v~lw~~ 422 (1196)
.+..+ .++ .| ..+|.+++ |++ +.||+++.||+ .+.|..
T Consensus 282 --~~~~~----------------~~~~~~h~~~v~~~~--~~~--~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 282 --TRKKI----------------KNFAKFNEDSVVKIA--CSD--NILCLATSDDTFKTNAAI 322 (342)
T ss_dssp --TTEEE----------------EECCCCSSSEEEEEE--ECS--SEEEEEEECTHHHHCSSS
T ss_pred --cHhHh----------------hhhhcccCCCceEec--CCC--CeEEEEecCCcccccccc
Confidence 11111 222 24 78899999 999 89999999998 655553
No 92
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.92 E-value=3.1e-24 Score=255.62 Aligned_cols=274 Identities=12% Similarity=0.092 Sum_probs=194.6
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCCcE
Q 000992 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp-d~~~La~as~dG~I 99 (1196)
.+++++|.| +...|++++.|+.|..||+ ..++....+. +.+| .+.|.+|+|+| +++.|++++.||+|
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~--~~~~~~~~~~-----~~gH----~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNF--GIKDKPTFIK-----GIGA----GGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECS--SCCSCCEEEC-----CCSS----SCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEEC--CCCCceeEEE-----ccCC----CCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 699999998 5668999999999999999 4444321111 2333 46899999998 78999999999999
Q ss_pred EEEECCCCeEEEeee---ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVGR---VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~---~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
++||..++.+..... +...+.+++|||||++||+++.||+|.+|+.....+. .+.+|...|
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~----------------~~~~h~~~v 253 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW----------------NLRMHKKKV 253 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC----------------CSBCCSSCE
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE----------------EEecccceE
Confidence 999999877664432 2345789999999999999999999999875433221 233677889
Q ss_pred EEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCCcEEEE---eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 177 SPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQAS---SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 177 ~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G~l~~~---~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.+++|+|+|. +|| +++ .|++|+|||..+++.... ..+|.+.|.+++|+|+|++||+++.|+ .|
T Consensus 254 ~~v~~~p~~~~~~~-s~s------~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~------~i 320 (435)
T 4e54_B 254 THVALNPCCDWFLA-TAS------VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS------EI 320 (435)
T ss_dssp EEEEECTTCSSEEE-EEE------TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS------CE
T ss_pred EeeeecCCCceEEE-Eec------CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC------EE
Confidence 9999999998 555 454 478999999866654332 356888999999999999999999864 69
Q ss_pred EEEeCC-CeeEEEEEeccC---CCCcEEEEEEccCCCeeEEEEccCC---------cceEEEEEecCCEEEEEEEEEEec
Q 000992 253 VFYERN-GLERSSFDINEQ---IDSTVELLKWNCMSDLLAAVVRFEE---------YDSVKICFFSNNHWYLKYEIRYLR 319 (1196)
Q Consensus 253 ~~~e~n-Gl~~~~f~l~~~---~~~~V~~laWSpDg~~LAs~~~d~~---------~~~V~lW~~~n~~wylkq~l~~~~ 319 (1196)
++|+.. |.....+..... ....+....|+|++.+++++..+.+ ..+|++|+..+... ...+..+.
T Consensus 321 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~--~~~l~~~~ 398 (435)
T 4e54_B 321 RVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM--MCQLYDPE 398 (435)
T ss_dssp EEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE--EEEECCSS
T ss_pred EEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE--EEEEeCCC
Confidence 999953 333222211100 1123556789999999988865431 23799999887642 22222222
Q ss_pred CC-cEE-EEEccCCCceEEEE
Q 000992 320 RD-GIR-FMWHPTKPLQLICW 338 (1196)
Q Consensus 320 ~~-~~~-v~Wsp~~~~~L~~~ 338 (1196)
.. ..+ ..|||++.. |+.+
T Consensus 399 ~~~v~s~~~fspdg~~-lasg 418 (435)
T 4e54_B 399 SSGISSLNEFNPMGDT-LASA 418 (435)
T ss_dssp CCCCCCEEEECTTSSC-EEEE
T ss_pred CCcEEEEEEECCCCCE-EEEE
Confidence 22 233 468998764 4443
No 93
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.92 E-value=3.9e-22 Score=237.50 Aligned_cols=308 Identities=12% Similarity=0.072 Sum_probs=218.5
Q ss_pred EEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeeccccc
Q 000992 82 DYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELA 159 (1196)
Q Consensus 82 ~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~ 159 (1196)
.++++|+.|++|+.||+|++||..+++. ..+..|.++|.+++|+ ++.|++++.||+|++|+. ..+.+..
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~------- 194 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT------- 194 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE-------
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE-------
Confidence 3566799999999999999999988764 3555679999999998 569999999999999973 2322222
Q ss_pred CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEE
Q 000992 160 EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 160 ~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs 239 (1196)
+.+|...+.+++|+ +.+++ +++ .|++|++||..+|+...+..+|.+.+.+++| +|++|++
T Consensus 195 ---------~~~h~~~v~~~~~~--~~~l~-s~s------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~ 254 (445)
T 2ovr_B 195 ---------LYGHTSTVRCMHLH--EKRVV-SGS------RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVS 254 (445)
T ss_dssp ---------ECCCSSCEEEEEEE--TTEEE-EEE------TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEE
T ss_pred ---------ECCCCCcEEEEEec--CCEEE-EEe------CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEE
Confidence 22566788999995 56788 565 4699999999899999999999999999999 8999999
Q ss_pred EecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe
Q 000992 240 VYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 318 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~ 318 (1196)
++.++ .|++|+.. +.... .+.. +...|.+++| ||..|++++.|+ +|++|++.+... ...+..+
T Consensus 255 ~~~dg------~i~iwd~~~~~~~~--~~~~-~~~~v~~~~~--~~~~l~~~~~d~---~i~i~d~~~~~~--~~~~~~~ 318 (445)
T 2ovr_B 255 GAYDF------MVKVWDPETETCLH--TLQG-HTNRVYSLQF--DGIHVVSGSLDT---SIRVWDVETGNC--IHTLTGH 318 (445)
T ss_dssp EETTS------CEEEEEGGGTEEEE--EECC-CSSCEEEEEE--CSSEEEEEETTS---CEEEEETTTCCE--EEEECCC
T ss_pred EcCCC------EEEEEECCCCcEeE--EecC-CCCceEEEEE--CCCEEEEEeCCC---eEEEEECCCCCE--EEEEcCC
Confidence 99864 69999954 43332 2332 3567999999 899999999999 999999987642 2233222
Q ss_pred cCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee----cCCCCE
Q 000992 319 RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL----KFPTAV 394 (1196)
Q Consensus 319 ~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l----~~~~~V 394 (1196)
......+.|++ . .+.+++.+|.+ ++|+++... ...++ .|...|
T Consensus 319 ~~~v~~~~~~~--~-~l~~~~~dg~i-------------------------~vwd~~~~~-----~~~~~~~~~~~~~~v 365 (445)
T 2ovr_B 319 QSLTSGMELKD--N-ILVSGNADSTV-------------------------KIWDIKTGQ-----CLQTLQGPNKHQSAV 365 (445)
T ss_dssp CSCEEEEEEET--T-EEEEEETTSCE-------------------------EEEETTTCC-----EEEEECSTTSCSSCE
T ss_pred cccEEEEEEeC--C-EEEEEeCCCeE-------------------------EEEECCCCc-----EEEEEccCCCCCCCE
Confidence 22224444432 2 34555555544 333332110 11122 267789
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCC--Cc
Q 000992 395 TEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPR--HS 472 (1196)
Q Consensus 395 ~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~--~~ 472 (1196)
.+++|+ + +.|++++.||+|++|++.+......+. ......+...+..++|+|++.++|+++.+.. ..
T Consensus 366 ~~~~~~--~--~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~ 434 (445)
T 2ovr_B 366 TCLQFN--K--NFVITSSDDGTVKLWDLKTGEFIRNLV-------TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 434 (445)
T ss_dssp EEEEEC--S--SEEEEEETTSEEEEEETTTCCEEEEEE-------ECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred EEEEEC--C--CEEEEEeCCCeEEEEECCCCceeeeee-------ccccCCCCceEEEEEecCCEEEEEEcccCCCCccE
Confidence 999996 4 699999999999999998654332210 0001234458999999999999999887643 23
Q ss_pred eEEEEe
Q 000992 473 NYFRGA 478 (1196)
Q Consensus 473 ~~~~~~ 478 (1196)
+.+|++
T Consensus 435 l~v~df 440 (445)
T 2ovr_B 435 LLVLDF 440 (445)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 555555
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2e-23 Score=240.04 Aligned_cols=257 Identities=15% Similarity=0.152 Sum_probs=188.5
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC--CceE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD--GKYF 188 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD--G~~l 188 (1196)
+...|.+.|.+++|||||++||+++.||+|++|+..... ..... .+.+|...|.+++|+|+ |++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~-----------~~~~h~~~v~~~~~~~~~~~~~l 72 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLID-----------TLTGHEGPVWRVDWAHPKFGTIL 72 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEE-----------EECCCSSCEEEEEECCGGGCSEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--ceeee-----------EecCCCCcEEEEEeCCCCCCCEE
Confidence 445679999999999999999999999999998743111 11111 12356678999999988 9999
Q ss_pred EEeeccccccCCCCEEEEEECCCCc--EEEEeccCCCceeEEEEcCC--CCeEEEEecCCCCCCCCeEEEEeCCCe-eEE
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYERNGL-ERS 263 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~--l~~~~e~~~~~v~slawsPd--G~~IAs~s~d~~~~~~~~V~~~e~nGl-~~~ 263 (1196)
+ +++ .|++|+|||..+|+ .......|.+.+.+++|+|+ |++|++++.+ ..|++|+.... ...
T Consensus 73 ~-s~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 73 A-SCS------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTS 139 (379)
T ss_dssp E-EEE------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCC
T ss_pred E-Eec------cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCcee
Confidence 9 565 46899999998886 66677788999999999999 9999999986 47999996533 122
Q ss_pred EEEeccCCCCcEEEEEEcc-------------CCCeeEEEEccCCcceEEEEEecCC--EEEEEEEEEEecCCcEEEEEc
Q 000992 264 SFDINEQIDSTVELLKWNC-------------MSDLLAAVVRFEEYDSVKICFFSNN--HWYLKYEIRYLRRDGIRFMWH 328 (1196)
Q Consensus 264 ~f~l~~~~~~~V~~laWSp-------------Dg~~LAs~~~d~~~~~V~lW~~~n~--~wylkq~l~~~~~~~~~v~Ws 328 (1196)
.+.+.. +...|.+++|+| |+.+|++++.|+ +|++|++.+. .+.+...+..+......+.|+
T Consensus 140 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s 215 (379)
T 3jrp_A 140 PIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN---LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 215 (379)
T ss_dssp EEEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTS---CEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred eEEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC---eEEEEEecCCCcceeeEEEEecccCcEeEEEEC
Confidence 223332 356799999999 799999999999 9999998653 344444444444344889999
Q ss_pred cCC--CceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee-eeecCCCCEEEEEEecCCCC
Q 000992 329 PTK--PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL-FSLKFPTAVTEMAFYSKSSK 405 (1196)
Q Consensus 329 p~~--~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~-~~l~~~~~V~~Vafspdg~~ 405 (1196)
|++ +..|++++.+|.+.+ |++. ....+..... ....+...|++++|+|+|
T Consensus 216 p~~~~~~~l~s~~~dg~i~i----wd~~---------------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-- 268 (379)
T 3jrp_A 216 PTVLLRSYLASVSQDRTCII----WTQD---------------------NEQGPWKKTLLKEEKFPDVLWRASWSLSG-- 268 (379)
T ss_dssp CCCSSSEEEEEEETTSCEEE----EEES---------------------STTSCCEEEESSSSCCSSCEEEEEECSSS--
T ss_pred CCCCCCCeEEEEeCCCEEEE----EeCC---------------------CCCccceeeeeccccCCCcEEEEEEcCCC--
Confidence 995 455777776776643 3322 1110000000 111367889999999999
Q ss_pred CEEEEEECCCcEEEEeCCC
Q 000992 406 NCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 406 ~~lAs~~~dg~v~lw~~~~ 424 (1196)
+.||+++.||.|++|++..
T Consensus 269 ~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 269 NVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CCEEEEESSSSEEEEEEEE
T ss_pred CEEEEecCCCcEEEEeCCC
Confidence 8999999999999999874
No 95
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.92 E-value=7.1e-23 Score=242.61 Aligned_cols=282 Identities=12% Similarity=0.109 Sum_probs=206.4
Q ss_pred cEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc
Q 000992 118 GVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN 196 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~ 196 (1196)
.++.++||++ .+||+|. |++|++|+. .++......+ ++|.+.|.+|+|+|||++|| +++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~--------------~~~~~~V~sv~fspdg~~la-sgs--- 166 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQM--------------EQPGEYISSVAWIKEGNYLA-VGT--- 166 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEEC--------------CSTTCCEEEEEECTTSSEEE-EEE---
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEe--------------cCCCCcEEEEEECCCCCEEE-EEE---
Confidence 4678999987 5888776 889999973 3333322222 24557789999999999999 676
Q ss_pred ccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEE
Q 000992 197 SSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVE 276 (1196)
Q Consensus 197 ~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~ 276 (1196)
.|++|+|||..+|+++.+..+|...+.+++| +|++|++++.+ ..+.+|+..........+.. +...+.
T Consensus 167 ---~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~-h~~~~~ 234 (420)
T 4gga_A 167 ---SSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRS------GHIHHHDVRVAEHHVATLSG-HSQEVC 234 (420)
T ss_dssp ---TTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETT------SEEEEEETTSSSCEEEEEEC-CSSCEE
T ss_pred ---CCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCC------CceeEeeecccceeeEEecc-ccccee
Confidence 4689999999999999999999998888777 56899999986 46999986543333223443 356799
Q ss_pred EEEEccCCCeeEEEEccCCcceEEEEEecCCEE--EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee
Q 000992 277 LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW--YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA 354 (1196)
Q Consensus 277 ~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w--ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~ 354 (1196)
.+.|+|+|++|++++.|+ .|++|+..+..- ...+....+......+.|+|.+...+.+++.+
T Consensus 235 ~~~~~~~g~~l~s~~~D~---~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs------------- 298 (420)
T 4gga_A 235 GLRWAPDGRHLASGGNDN---LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT------------- 298 (420)
T ss_dssp EEEECTTSSEEEEEETTS---CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT-------------
T ss_pred eeeecCCCCeeeeeeccc---cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec-------------
Confidence 999999999999999999 999999865321 11112222222337789999887755554321
Q ss_pred cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEE--CCCcEEEEeCCCCCcccccc
Q 000992 355 VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL--SDGCLCVVDLPAPDMLEDLE 432 (1196)
Q Consensus 355 ~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~--~dg~v~lw~~~~~~~~~~~~ 432 (1196)
.+++|++|++... .+...+.+...|.++.|+|++ +.+++++ .||+|++|+..+..+...+.
T Consensus 299 ----------~D~~I~iwd~~t~-----~~~~~~~~~~~v~~~~~~~~~--~~lv~~sg~~d~~I~iwd~~~~~~v~~l~ 361 (420)
T 4gga_A 299 ----------SDRHIRIWNVCSG-----ACLSAVDAHSQVCSILWSPHY--KELISGHGFAQNQLVIWKYPTMAKVAELK 361 (420)
T ss_dssp ----------TTCEEEEEETTTT-----EEEEEEECSSCEEEEEEETTT--TEEEEEECTTTCCEEEEETTTCCEEEEEC
T ss_pred ----------CCCEEEEEeCCcc-----ccceeeccccceeeeeecCCC--CeEEEEEecCCCEEEEEECCCCcEEEEEc
Confidence 1224555554322 233445566789999999999 7877765 78999999998766665555
Q ss_pred CCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 433 GTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 433 g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
| |.+.|..++|+|||.+|++++.+ .++.+|++
T Consensus 362 g------------H~~~V~~l~~spdg~~l~S~s~D--~tvriWdv 393 (420)
T 4gga_A 362 G------------HTSRVLSLTMSPDGATVASAAAD--ETLRLWRC 393 (420)
T ss_dssp C------------CSSCEEEEEECTTSSCEEEEETT--TEEEEECC
T ss_pred C------------CCCCEEEEEEcCCCCEEEEEecC--CeEEEEEC
Confidence 4 45689999999999999999876 68999987
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=4.8e-24 Score=250.56 Aligned_cols=291 Identities=13% Similarity=0.079 Sum_probs=202.9
Q ss_pred EEEEEEccCCCEEE-EEECCCcEEEEECCCC-e----EEEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEeccCcee
Q 000992 78 ITAFDYLMEKEALI-VGTSSGLLLLHSVDGN-A----TEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 78 v~~v~~spd~~~La-~as~dG~I~lw~~~~~-~----~e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
...++++|+...++ +++.||.|++|+.... + +..+..|.+.|.+++||| |+++||+++.||+|++|+..-...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 34578898876554 4688999999998642 2 233455789999999999 999999999999999997432110
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEEECCCCcEEEEe--ccCCCceeE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--ELKAFMGAV 227 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~--e~~~~~v~s 227 (1196)
.. .. ... ...+.+|...|.+++|+||| .+|+ +++ .|++|+|||..+|+...+. ..|.+.+.+
T Consensus 117 ~~----~~--~~~--~~~~~~h~~~v~~~~~~p~~~~~l~-s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 181 (402)
T 2aq5_A 117 VL----PL--REP--VITLEGHTKRVGIVAWHPTAQNVLL-SAG------CDNVILVWDVGTGAAVLTLGPDVHPDTIYS 181 (402)
T ss_dssp SS----CB--CSC--SEEEECCSSCEEEEEECSSBTTEEE-EEE------TTSCEEEEETTTTEEEEEECTTTCCSCEEE
T ss_pred cc----cc--CCc--eEEecCCCCeEEEEEECcCCCCEEE-EEc------CCCEEEEEECCCCCccEEEecCCCCCceEE
Confidence 00 00 000 01234677889999999999 5888 565 4689999999899999988 789999999
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEE---EccCCcceEEEEE
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAV---VRFEEYDSVKICF 303 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~---~~d~~~~~V~lW~ 303 (1196)
++|+|+|++||+++.| ..|++|+. +|.....+. ..+....+..++|+|||++|+++ +.|+ .|++|+
T Consensus 182 ~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~---~i~iwd 251 (402)
T 2aq5_A 182 VDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKD-RPHEGTRPVHAVFVSEGKILTTGFSRMSER---QVALWD 251 (402)
T ss_dssp EEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEE-CSSCSSSCCEEEECSTTEEEEEEECTTCCE---EEEEEE
T ss_pred EEECCCCCEEEEEecC------CcEEEEeCCCCceeeeec-cCCCCCcceEEEEcCCCcEEEEeccCCCCc---eEEEEc
Confidence 9999999999999986 47999995 454433221 23323348899999999999999 5677 899999
Q ss_pred ecCCEEEEEEEEEEecCC-cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCC
Q 000992 304 FSNNHWYLKYEIRYLRRD-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 382 (1196)
Q Consensus 304 ~~n~~wylkq~l~~~~~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vppp 382 (1196)
..+..-.+ ......... ...+.|+|++...+..+..+|.+.+ |++. .+. |..
T Consensus 252 ~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i----~d~~----------~~~------------~~~ 304 (402)
T 2aq5_A 252 TKHLEEPL-SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY----FEIT----------SEA------------PFL 304 (402)
T ss_dssp TTBCSSCS-EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE----EEEC----------SST------------TCE
T ss_pred CccccCCc-eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE----EEec----------CCC------------cce
Confidence 98743211 112222222 3889999998763333434666543 3221 111 000
Q ss_pred ceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 383 MYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 383 m~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.......+..+|.+++|+|++ ..++ +.++.+++|++.+
T Consensus 305 ~~l~~~~~~~~v~~~~~sp~~--~~~~--s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 305 HYLSMFSSKESQRGMGYMPKR--GLEV--NKCEIARFYKLHE 342 (402)
T ss_dssp EEEEEECCSSCCSEEEECCGG--GSCG--GGTEEEEEEEEET
T ss_pred EeecccccCCcccceEEeccc--ccce--ecceeEEEEEcCC
Confidence 011223356889999999999 6665 3678999999874
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.92 E-value=1.4e-22 Score=227.85 Aligned_cols=281 Identities=11% Similarity=0.083 Sum_probs=199.8
Q ss_pred EEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc
Q 000992 119 VRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1196)
Q Consensus 119 I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~ 197 (1196)
.++++|||++ +||++. |++|++|+. .++.+.... +++|...|.+++|+|||++|| +++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~--------------~~~~~~~V~~v~~~~~~~~l~-sgs---- 86 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQ--------------MEQPGEYISSVAWIKEGNYLA-VGT---- 86 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEE--------------CCSTTCCEEEEEECTTSSEEE-EEE----
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEE--------------ecCCCCeEEEEEECCCCCEEE-EEE----
Confidence 5779999996 788765 899999873 333333222 224567789999999999999 676
Q ss_pred cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEE
Q 000992 198 SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVEL 277 (1196)
Q Consensus 198 ~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~ 277 (1196)
.|++|+|||..+|++..+..+|...+. +++++++++++++.+ ..+.+|+..........+.. +...+..
T Consensus 87 --~Dg~v~iw~~~~~~~~~~~~~h~~~~~--~~~~~~~~l~s~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 155 (318)
T 4ggc_A 87 --SSAEVQLWDVQQQKRLRNMTSHSARVG--SLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSG-HSQEVCG 155 (318)
T ss_dssp --TTSEEEEEETTTTEEEEEEECCSSCEE--EEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC-CSSCEEE
T ss_pred --CCCcEEEeecCCceeEEEecCccceEE--EeecCCCEEEEEecC------CceEeeecCCCceeEEEEcC-ccCceEE
Confidence 479999999999999999998887655 466778899999985 45777875433222223333 3567999
Q ss_pred EEEccCCCeeEEEEccCCcceEEEEEecCCEE--EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeec
Q 000992 278 LKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW--YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV 355 (1196)
Q Consensus 278 laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w--ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~ 355 (1196)
++|+++|++|++++.|+ +|++|++.+..- ........+......+.|+|.++..+.+.+.+
T Consensus 156 ~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------------- 218 (318)
T 4ggc_A 156 LRWAPDGRHLASGGNDN---LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT-------------- 218 (318)
T ss_dssp EEECTTSSEEEEEETTS---CEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT--------------
T ss_pred EEEcCCCCEEEEEecCc---ceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC--------------
Confidence 99999999999999999 999999875321 00011111111236778888877644443321
Q ss_pred CCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEE--CCCcEEEEeCCCCCccccccC
Q 000992 356 MENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL--SDGCLCVVDLPAPDMLEDLEG 433 (1196)
Q Consensus 356 ~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~--~dg~v~lw~~~~~~~~~~~~g 433 (1196)
...++++|+.... .......+...|..+.|+|++ +.+++++ .|++|++|+..+..+...+.|
T Consensus 219 ---------~~~~i~lwd~~~~-----~~~~~~~~~~~v~~~~~~~~~--~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g 282 (318)
T 4ggc_A 219 ---------SDRHIRIWNVCSG-----ACLSAVDAHSQVCSILWSPHY--KELISGHGFAQNQLVIWKYPTMAKVAELKG 282 (318)
T ss_dssp ---------TTCEEEEEETTTC-----CEEEEEECSSCEEEEEEETTT--TEEEEEECTTTCCEEEEETTTCCEEEEECC
T ss_pred ---------CCCEEEEEecccc-----cccccccceeeeeeeeecccc--cceEEEEEcCCCEEEEEECCCCcEEEEEcC
Confidence 1234556654322 122334567789999999999 7776655 799999999987666544544
Q ss_pred CceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 434 TEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 434 ~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
|.+.|..++|+|||.+||+++.+ .++.+|++
T Consensus 283 ------------H~~~V~~l~~spdg~~l~S~s~D--~~v~iWd~ 313 (318)
T 4ggc_A 283 ------------HTSRVLSLTMSPDGATVASAAAD--ETLRLWRC 313 (318)
T ss_dssp ------------CSSCEEEEEECTTSSCEEEEETT--TEEEEECC
T ss_pred ------------CCCCEEEEEEcCCCCEEEEEecC--CeEEEEEC
Confidence 45689999999999999998876 68999976
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=2e-23 Score=245.32 Aligned_cols=271 Identities=13% Similarity=0.123 Sum_probs=193.2
Q ss_pred eEEeeecCCCEEEE-EeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCCcEEE
Q 000992 24 QFSALDIEQNRLFF-ASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLLLL 101 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~-~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp-d~~~La~as~dG~I~l 101 (1196)
..++++++...+.+ ++.++.|..|++. ..+.....+.. +.+| .+.|.+++|+| +++.|++++.||+|++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~-~~~~~~~~~~~----~~~h----~~~V~~~~~~p~~~~~l~s~s~dg~v~v 108 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLG-KTGRVDKNVPL----VCGH----TAPVLDIAWCPHNDNVIASGSEDCTVMV 108 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETT-CCEECCTTCCC----BCCC----SSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECc-cCCCCCCCCce----EecC----CCCEEEEEeCCCCCCEEEEEeCCCeEEE
Confidence 34566665544443 4678899999983 11111001111 2333 46899999999 9999999999999999
Q ss_pred EECCCC--------eEEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCcccc
Q 000992 102 HSVDGN--------ATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 102 w~~~~~--------~~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
|+..++ .+.....|...|.+++|+||| .+|++++.|++|++|+. ....+.... ..+
T Consensus 109 w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~ 174 (402)
T 2aq5_A 109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG--------------PDV 174 (402)
T ss_dssp EECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC--------------TTT
T ss_pred EEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe--------------cCC
Confidence 999875 233445578999999999998 69999999999999973 232222210 024
Q ss_pred CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCc-eeEEEEcCCCCeEEEEecCCCCCCC
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFM-GAVLEWMPSGANIAAVYDRKSENKC 249 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~-v~slawsPdG~~IAs~s~d~~~~~~ 249 (1196)
|.+.+.+++|+|||++|+ +++ .|++|+|||..+|+..... .+|.+. +..++|+|+|++|+++.... ..
T Consensus 175 ~~~~v~~~~~~~~~~~l~-~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---~d 244 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALIC-TSC------RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM---SE 244 (402)
T ss_dssp CCSCEEEEEECTTSSCEE-EEE------TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT---CC
T ss_pred CCCceEEEEECCCCCEEE-EEe------cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC---CC
Confidence 567889999999999999 565 4689999999899998887 677765 79999999999999983211 13
Q ss_pred CeEEEEeCCCee--EEEEEeccCCCCcEEEEEEccCCCeeEEEE-ccCCcceEEEEEecCCEEEEEEEEEEec--CCcEE
Q 000992 250 PSIVFYERNGLE--RSSFDINEQIDSTVELLKWNCMSDLLAAVV-RFEEYDSVKICFFSNNHWYLKYEIRYLR--RDGIR 324 (1196)
Q Consensus 250 ~~V~~~e~nGl~--~~~f~l~~~~~~~V~~laWSpDg~~LAs~~-~d~~~~~V~lW~~~n~~wylkq~l~~~~--~~~~~ 324 (1196)
..|.+|+..... ...+. ..+...|..++|+|||+.|++++ .|+ +|++|++.+..-++. .+..+. .....
T Consensus 245 ~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~g~~dg---~i~i~d~~~~~~~~~-~l~~~~~~~~v~~ 318 (402)
T 2aq5_A 245 RQVALWDTKHLEEPLSLQE--LDTSSGVLLPFFDPDTNIVYLCGKGDS---SIRYFEITSEAPFLH-YLSMFSSKESQRG 318 (402)
T ss_dssp EEEEEEETTBCSSCSEEEE--CCCCSSCEEEEEETTTTEEEEEETTCS---CEEEEEECSSTTCEE-EEEEECCSSCCSE
T ss_pred ceEEEEcCccccCCceEEe--ccCCCceeEEEEcCCCCEEEEEEcCCC---eEEEEEecCCCcceE-eecccccCCcccc
Confidence 579999965422 11122 22345799999999999998665 577 899999987652121 222222 22378
Q ss_pred EEEccCCCc
Q 000992 325 FMWHPTKPL 333 (1196)
Q Consensus 325 v~Wsp~~~~ 333 (1196)
+.|+|++..
T Consensus 319 ~~~sp~~~~ 327 (402)
T 2aq5_A 319 MGYMPKRGL 327 (402)
T ss_dssp EEECCGGGS
T ss_pred eEEeccccc
Confidence 999998864
No 99
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.92 E-value=1.3e-22 Score=228.79 Aligned_cols=257 Identities=14% Similarity=0.102 Sum_probs=192.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--d~~~La~as~dG~I 99 (1196)
.+.+++|++++..|++++.|+.|..|++ ..+....... ..+.++ .+.|.+++|+| |++.|++++.||+|
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~---~~~~~~----~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKL--DKDTSNWELS---DSWRAH----DSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEE--CSSSCCEEEE---EEEECC----SSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEEC--CCCCCcceec---ceeccC----CCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 7999999999999999999999999999 4433221211 012333 46899999999 69999999999999
Q ss_pred EEEECCCCe----------EEEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEe-ccCceeeeeecccccCcccccc
Q 000992 100 LLHSVDGNA----------TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 100 ~lw~~~~~~----------~e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
++||..++. +.....|.+.|.+++|+|+ |++|++++.|++|++|+ +....+......... ..+ .
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~-~ 160 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM--KVL-S 160 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE--ESC-S
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc--ccc-c
Confidence 999998742 3455557899999999999 99999999999999997 333332222211100 000 0
Q ss_pred CccccCCCCeEEEEEccC---CceEEEeeccccccCCCCEEEEEECCCCcE--EEEeccCCCceeEEEEcCCC----CeE
Q 000992 167 PELSSSFSFKSPISWRGD---GKYFATLSEFCNSSKLHKRLKVWERDSGTL--QASSELKAFMGAVLEWMPSG----ANI 237 (1196)
Q Consensus 167 tqf~~~~~~v~~isWspD---G~~lAsvss~d~~~~~d~~irVWd~~~G~l--~~~~e~~~~~v~slawsPdG----~~I 237 (1196)
....++...+.+++|+|+ +.+|+ +++ .++.+.+|+...+.. .....+|.+.+.+++|+|+| ++|
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~-~~~------~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l 233 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLA-VSA------LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI 233 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEE-EEE------TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred cccCCcccceeEEEeccCCCCCcEEE-Eec------CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence 011145677899999998 99999 665 357888888877765 56677899999999999999 899
Q ss_pred EEEecCCCCCCCCeEEEEeCCCee-------------------------------------------EEE--EEeccCCC
Q 000992 238 AAVYDRKSENKCPSIVFYERNGLE-------------------------------------------RSS--FDINEQID 272 (1196)
Q Consensus 238 As~s~d~~~~~~~~V~~~e~nGl~-------------------------------------------~~~--f~l~~~~~ 272 (1196)
|+++.|+ .|++|+..... ..+ ..+. .+.
T Consensus 234 ~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 306 (351)
T 3f3f_A 234 ATGCKDG------RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHN 306 (351)
T ss_dssp EEEETTS------CEEEEEEEECC---------------------------------------CCSEEEEEEEEEC-TTS
T ss_pred EEEcCCC------eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-ccc
Confidence 9999864 69999854210 001 1122 245
Q ss_pred CcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 273 STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 273 ~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
..|.+++|+|||++||+++.|+ +|++|++.+.
T Consensus 307 ~~v~~~~~s~~~~~l~s~~~dg---~v~iw~~~~~ 338 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSSAGDDG---KVRLWKATYS 338 (351)
T ss_dssp SCEEEEEECSSSCCEEEEETTS---CEEEEEECTT
T ss_pred ccEEEEEEcCCCCEEEEecCCC---cEEEEecCcC
Confidence 6799999999999999999999 9999999864
No 100
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.3e-22 Score=222.90 Aligned_cols=264 Identities=12% Similarity=0.011 Sum_probs=201.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++| ++++.|++++.|+.|..|+. ..+... .. +..+ .+.|.+++|+|+++.|++++.||.|++
T Consensus 20 ~v~~~~~-~~~~~l~s~~~dg~v~vw~~--~~~~~~-~~------~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSRDGTVRLWSK--DDQWLG-TV------VYTG----QGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CEEEEEE-EETTEEEEEETTSEEEEEEE--SSSEEE-EE------EEEC----SSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CcEEEEe-cCCCEEEEEEcCCcEEEEEC--CCCEEE-EE------eecC----CccEEEEEECCCCCEEEEecCCCeEEE
Confidence 7889999 99999999999999999998 443321 11 2222 368999999999999999999999999
Q ss_pred EECCCC----eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 102 HSVDGN----ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 102 w~~~~~----~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
|+.... .+.....|...|.+++| +++.|++++.|++|.+|+ ......... .|...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~~~~~----------------~~~~~v~ 146 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EGSLVYNLQ----------------AHNASVW 146 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TTEEEEEEE----------------CCSSCEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEEEecc----------------cCCCcee
Confidence 998652 23345557899999999 688999999999999997 333322222 4456789
Q ss_pred EEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 178 PISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 178 ~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
+++|.| ++.+|+ +++ .++.|++||. ++....... +.+.+.+++|+|+|. +++++.+ ..|.+|
T Consensus 147 ~~~~~~~~~~~l~-~~~------~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d------g~i~i~ 210 (313)
T 3odt_A 147 DAKVVSFSENKFL-TAS------ADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND------GLIKLV 210 (313)
T ss_dssp EEEEEETTTTEEE-EEE------TTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETT------SEEEEE
T ss_pred EEEEccCCCCEEE-EEE------CCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCC------CeEEEE
Confidence 999998 999999 565 4689999994 556666665 888999999999999 7777775 479999
Q ss_pred eCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 256 ERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 256 e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
+.. |.....+ .. +...|.+++|+||| .|++++.|+ +|++|++.+... .+.+..+......+.|+|++.
T Consensus 211 d~~~~~~~~~~--~~-~~~~i~~~~~~~~~-~l~~~~~dg---~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~-- 279 (313)
T 3odt_A 211 DMHTGDVLRTY--EG-HESFVYCIKLLPNG-DIVSCGEDR---TVRIWSKENGSL--KQVITLPAISIWSVDCMSNGD-- 279 (313)
T ss_dssp ETTTCCEEEEE--EC-CSSCEEEEEECTTS-CEEEEETTS---EEEEECTTTCCE--EEEEECSSSCEEEEEECTTSC--
T ss_pred ECCchhhhhhh--hc-CCceEEEEEEecCC-CEEEEecCC---EEEEEECCCCce--eEEEeccCceEEEEEEccCCC--
Confidence 964 4443333 32 35679999999999 688999998 999999987653 344544433448899999886
Q ss_pred EEEEecCCcEE
Q 000992 335 LICWTLDGQIT 345 (1196)
Q Consensus 335 L~~~~~~g~~~ 345 (1196)
+.+++.+|.+.
T Consensus 280 ~~~~~~dg~i~ 290 (313)
T 3odt_A 280 IIVGSSDNLVR 290 (313)
T ss_dssp EEEEETTSCEE
T ss_pred EEEEeCCCcEE
Confidence 45566666654
No 101
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.92 E-value=1e-21 Score=233.84 Aligned_cols=308 Identities=14% Similarity=0.092 Sum_probs=222.9
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 000992 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~ 106 (1196)
++.++++.|++++.|+.|..||. .+++. +.+ +.+| .+.|.+++|+ ++.|++++.||+|++||..+
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~--~~~~~---~~~----~~~h----~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~ 188 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSA--VTGKC---LRT----LVGH----TGGVWSSQMR--DNIIISGSTDRTLKVWNAET 188 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEET--TTCCE---EEE----CCCC----SSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred EEEEcCCEEEEEECCCcEEEEEC--CCCcE---EEE----EcCC----CCCEEEEEec--CCEEEEEeCCCeEEEEECCc
Confidence 45556899999999999999998 44443 111 3333 4689999998 67999999999999999998
Q ss_pred CeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccC
Q 000992 107 NAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1196)
Q Consensus 107 ~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD 184 (1196)
++. .....|.+.|.+++|+ ++.|++++.|++|.+|+.. ...+... .+|...+.+++| |
T Consensus 189 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~----------------~~~~~~v~~~~~--~ 248 (445)
T 2ovr_B 189 GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL----------------MGHVAAVRCVQY--D 248 (445)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE----------------ECCSSCEEEEEE--C
T ss_pred CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE----------------cCCcccEEEEEE--C
Confidence 765 3555578999999995 5789999999999998732 3322221 245567899999 8
Q ss_pred CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEE
Q 000992 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERS 263 (1196)
Q Consensus 185 G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~ 263 (1196)
|++++ +++ .+++|++||..+++...+..+|.+.+.+++| +|+.|++++.|+ .|++|+. +|....
T Consensus 249 ~~~l~-~~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~------~i~i~d~~~~~~~~ 313 (445)
T 2ovr_B 249 GRRVV-SGA------YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT------SIRVWDVETGNCIH 313 (445)
T ss_dssp SSCEE-EEE------TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS------CEEEEETTTCCEEE
T ss_pred CCEEE-EEc------CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC------eEEEEECCCCCEEE
Confidence 89999 565 4689999999899999999999999999999 899999999864 6999995 444333
Q ss_pred EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEE---ecCCcEEEEEccCCCceEEEEec
Q 000992 264 SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY---LRRDGIRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 264 ~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~---~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1196)
.+.. +...+..++| ++++|++++.|+ +|++|+..+... .+.+.. +......+.|++ ..|.+++.
T Consensus 314 --~~~~-~~~~v~~~~~--~~~~l~~~~~dg---~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~ 380 (445)
T 2ovr_B 314 --TLTG-HQSLTSGMEL--KDNILVSGNADS---TVKIWDIKTGQC--LQTLQGPNKHQSAVTCLQFNK---NFVITSSD 380 (445)
T ss_dssp --EECC-CCSCEEEEEE--ETTEEEEEETTS---CEEEEETTTCCE--EEEECSTTSCSSCEEEEEECS---SEEEEEET
T ss_pred --EEcC-CcccEEEEEE--eCCEEEEEeCCC---eEEEEECCCCcE--EEEEccCCCCCCCEEEEEECC---CEEEEEeC
Confidence 2332 3456777766 577999999999 999999987542 233332 111226677763 33566665
Q ss_pred CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEe-eccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCc---
Q 000992 341 DGQITTYNFIWTTAVMENSTALVIDGSKILVT-PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGC--- 416 (1196)
Q Consensus 341 ~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt-~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~--- 416 (1196)
+|.+. .|++. +|..+... .+ ..-.+.+.|++++|+|++ ..+|+++.||+
T Consensus 381 dg~v~----iwd~~----------~~~~~~~~~~~-----------~~~~~~~~v~~~~~s~~~--~~la~~~~dg~~~~ 433 (445)
T 2ovr_B 381 DGTVK----LWDLK----------TGEFIRNLVTL-----------ESGGSGGVVWRIRASNTK--LVCAVGSRNGTEET 433 (445)
T ss_dssp TSEEE----EEETT----------TCCEEEEEEEC-----------TTGGGTCEEEEEEECSSE--EEEEEECSSSSSCC
T ss_pred CCeEE----EEECC----------CCceeeeeecc-----------ccCCCCceEEEEEecCCE--EEEEEcccCCCCcc
Confidence 66553 23321 12221100 00 001367889999999999 89999999998
Q ss_pred -EEEEeCCC
Q 000992 417 -LCVVDLPA 424 (1196)
Q Consensus 417 -v~lw~~~~ 424 (1196)
|.+|+++.
T Consensus 434 ~l~v~df~~ 442 (445)
T 2ovr_B 434 KLLVLDFDV 442 (445)
T ss_dssp EEEEEECCC
T ss_pred EEEEEECCC
Confidence 99999874
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.91 E-value=2.3e-22 Score=228.75 Aligned_cols=275 Identities=8% Similarity=-0.005 Sum_probs=200.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC-EEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~-~La~as~dG~I~ 100 (1196)
.+.+++|.+++..|++++.|+.|..|+. ..+........ +..+ ...|.+++|+|+++ .|++++.||+|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~--~~~~~~~~~~~----~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKF--DIQAKNVDLLQ----SLRY----KHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEE--ETTTTEEEEEE----EEEC----SSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEe--CCCCcccccee----eeec----CCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 7999999999999999999999999999 44331111111 2222 36899999999999 999999999999
Q ss_pred EEEC-CCCeEEEeee--ecCcEEEEEECCCCCEEEEEeCCceEEEEeccC-ceee----eeecccccCccccccCccccC
Q 000992 101 LHSV-DGNATEVVGR--VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW-DLLY----ENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 101 lw~~-~~~~~e~vg~--~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~-d~~~----~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
+|+. .+++...+.. |...|.+++|+| ++.|++++.|++|++|+..- +.-. ...+. .+ .+
T Consensus 83 ~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----------~~-~~ 149 (342)
T 1yfq_A 83 KVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-----------NT-KV 149 (342)
T ss_dssp EECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS-----------SS-SS
T ss_pred EEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee-----------EE-ee
Confidence 9999 8888777776 899999999999 99999999999999986320 0000 11111 11 25
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-Cc--EEEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCC
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GT--LQASSELKAFMGAVLEWMP-SGANIAAVYDRKSENK 248 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~--l~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~ 248 (1196)
...+.+++|+|++ ++ +++ .++.|++||..+ +. ......++...+.+++|+| +|++||+++.+
T Consensus 150 ~~~v~~~~~~~~~--l~-~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----- 215 (342)
T 1yfq_A 150 KNKIFTMDTNSSR--LI-VGM------NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID----- 215 (342)
T ss_dssp CCCEEEEEECSSE--EE-EEE------STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT-----
T ss_pred CCceEEEEecCCc--EE-EEe------CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC-----
Confidence 5678999999999 66 454 468999999966 54 3334456788899999999 99999999985
Q ss_pred CCeEEEEeCCC-------eeEEEEEeccC------CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEE
Q 000992 249 CPSIVFYERNG-------LERSSFDINEQ------IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI 315 (1196)
Q Consensus 249 ~~~V~~~e~nG-------l~~~~f~l~~~------~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l 315 (1196)
..|.+|+.+. .....+..... +...|.+++|+|||++||+++.|+ .|++|++.+... ...+
T Consensus 216 -g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~--~~~~ 289 (342)
T 1yfq_A 216 -GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG---IISCWNLQTRKK--IKNF 289 (342)
T ss_dssp -SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS---CEEEEETTTTEE--EEEC
T ss_pred -CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc---eEEEEcCccHhH--hhhh
Confidence 4699988543 22222322110 123799999999999999999999 899999988653 2333
Q ss_pred EEe-cCCcEEEEEccCCCceEEEEecCC
Q 000992 316 RYL-RRDGIRFMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 316 ~~~-~~~~~~v~Wsp~~~~~L~~~~~~g 342 (1196)
..+ ......+. |++.. |+.++.||
T Consensus 290 ~~~h~~~v~~~~--~~~~~-l~s~s~Dg 314 (342)
T 1yfq_A 290 AKFNEDSVVKIA--CSDNI-LCLATSDD 314 (342)
T ss_dssp CCCSSSEEEEEE--ECSSE-EEEEEECT
T ss_pred hcccCCCceEec--CCCCe-EEEEecCC
Confidence 333 22224455 66653 55555554
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.4e-22 Score=238.00 Aligned_cols=225 Identities=15% Similarity=0.112 Sum_probs=172.5
Q ss_pred CCEEEEEEccCCCEE-EEEECCCcEEEEECC--CCe-EEEee--eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce
Q 000992 76 DSITAFDYLMEKEAL-IVGTSSGLLLLHSVD--GNA-TEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~L-a~as~dG~I~lw~~~--~~~-~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
+.|.+++|+|||+.| ++++.||+|++|+.. ++. +..+. .+...|.+++|||||++|++++.++.|.+|.. |+.
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~-~~~ 181 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI-NSI 181 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSC
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec-CCc
Confidence 369999999999996 899999999999998 654 34432 35688999999999999999999999988853 221
Q ss_pred eeee-ecccccCccccccCccccCCCCeEEEEEccC---CceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCc
Q 000992 150 LYEN-PLEELAEGFDVHEPELSSSFSFKSPISWRGD---GKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFM 224 (1196)
Q Consensus 150 ~~~~-~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD---G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~ 224 (1196)
.... .. ..+.+|...+.+++|+|| |++|+ +++ .|++|+|||..+|++..+ ..+|.+.
T Consensus 182 ~~~~~~~-----------~~~~~h~~~v~~~~~sp~~~~~~~l~-s~~------~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 182 PEEKFTQ-----------EPILGHVSMLTDVHLIKDSDGHQFII-TSD------RDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp CCSSCCC-----------CCSEECSSCEEEEEEEECTTSCEEEE-EEE------TTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred ccccccc-----------eeeecccCceEEEEEcCCCCCCcEEE-EEc------CCCcEEEEECCCCceeeeeecCCCCc
Confidence 1100 00 123356778999999999 99999 565 468999999988988877 5689999
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEecc----------------------CCCCcEEEEEEc
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINE----------------------QIDSTVELLKWN 281 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~----------------------~~~~~V~~laWS 281 (1196)
+.+++|+ +|++||+++.| ..|++|+. +|.....+.+.. .....|..|+|+
T Consensus 244 v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp EEEEEEC-STTEEEEEESS------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred eEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 9999999 99999999986 47999995 455444443220 123469999999
Q ss_pred cCCCeeEEEE-ccCCcceEEEEEe--cC-CEEEEEEEEEEecCCcEEEEEccC
Q 000992 282 CMSDLLAAVV-RFEEYDSVKICFF--SN-NHWYLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 282 pDg~~LAs~~-~d~~~~~V~lW~~--~n-~~wylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
|||++|++++ .++ +|++|++ .. ..+...+.+..+ .....+.|+|+
T Consensus 317 ~~~~~l~~~~~~d~---~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 317 KNLPFVAFFVEATK---CIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp SSSSEEEEEETTCS---EEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred CCCCEEEEEECCCC---eEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 9999999999 777 8999999 32 333445556554 33488999994
No 104
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-23 Score=256.66 Aligned_cols=281 Identities=10% Similarity=0.006 Sum_probs=187.1
Q ss_pred ceeEEeeecC------CCEEEEEeCCCcEEEEecccccccccc-eeecc--c-cccccccCCCCCCEEEEEEccCCCEEE
Q 000992 22 ILQFSALDIE------QNRLFFASSANNIYSAQLSSFQNERAS-IKTAI--S-AEIEHIDLEPGDSITAFDYLMEKEALI 91 (1196)
Q Consensus 22 ~~~~~~~d~~------~~~l~~~s~~~~i~~~~~~~~~~~~~~-~~~~~--~-~~l~~~~~~~~~~v~~v~~spd~~~La 91 (1196)
.+..++|.++ ++.|++++.|+.|..|++ ..+.... ....+ | ..+.++ .+.|.+++|+|++ .|+
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~--~~~~~~~~~~~~~~~p~~~l~~h----~~~v~sv~~s~~~-~la 281 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEI--IDNATDVHVFKMCEKPSLTLSLA----DSLITTFDFLSPT-TVV 281 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEEC--CCCSSSSSEEECCCSCSEEECCT----TTCEEEEEESSSS-EEE
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEc--CCCccccccceeecCceEEEEcC----CCCEEEEEecCCC-eEE
Confidence 5778889886 579999999999999999 3332100 00000 0 012222 3689999999975 899
Q ss_pred EEECCCcEEEEECCCCe--EEEeeeecCcEEEE--EECCCC-CEEEEEeCCceEEEEe-ccCceeeeeecccccCccccc
Q 000992 92 VGTSSGLLLLHSVDGNA--TEVVGRVEGGVRFI--SPSPDG-DLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVH 165 (1196)
Q Consensus 92 ~as~dG~I~lw~~~~~~--~e~vg~~~~~I~~~--awSPDg-~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs 165 (1196)
+|+.||+|++||..++. ......|.+.|.++ +|+||| ++||+++.|++|++|+ +..........+.
T Consensus 282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~-------- 353 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF-------- 353 (524)
T ss_dssp EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC--------
T ss_pred EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc--------
Confidence 99999999999998653 23455578999999 689998 9999999999999986 2222221111110
Q ss_pred cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC
Q 000992 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245 (1196)
Q Consensus 166 ~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~ 245 (1196)
....+.+++|+|||+.|| +++ .+++|||||..+|.+..++.+|.+.|.+|+|||+|++||||+.|
T Consensus 354 ------~~~~v~~v~fsp~~~~l~-s~~------~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D-- 418 (524)
T 2j04_B 354 ------RGSNLVPVVYCPQIYSYI-YSD------GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD-- 418 (524)
T ss_dssp ------SCCSCCCEEEETTTTEEE-EEC------SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT--
T ss_pred ------ccCcccceEeCCCcCeEE-EeC------CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECC--
Confidence 012367899999999999 565 46899999988999888888899999999999999999999986
Q ss_pred CCCCCeEEEEeCCCeeEEEEE-ec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEEEEEEEEecCCc
Q 000992 246 ENKCPSIVFYERNGLERSSFD-IN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDG 322 (1196)
Q Consensus 246 ~~~~~~V~~~e~nGl~~~~f~-l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~ 322 (1196)
.+|++|+..+.....+. .. ......|++++|||||+.+.. .+. +++|..+ +.. +...+..+...+
T Consensus 419 ----gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~~----~~~~~~~~~g~--~~~~l~gh~~~V 486 (524)
T 2j04_B 419 ----GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DSS----YEVYPLTVNDV--SKAKIDAHGINI 486 (524)
T ss_dssp ----TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE--CCC----CCCCC---------------CCCSC
T ss_pred ----CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc--cCC----ceecccccCCc--ceeeecCCCceE
Confidence 47999996542110000 00 011225789999999996643 232 3343322 111 223444444444
Q ss_pred EEEEEccCCC--ceEEEEecCCcE
Q 000992 323 IRFMWHPTKP--LQLICWTLDGQI 344 (1196)
Q Consensus 323 ~~v~Wsp~~~--~~L~~~~~~g~~ 344 (1196)
..+.|+|+++ ..++.++.+|.+
T Consensus 487 ~~Vafsp~~~~~~~lAsg~~~g~v 510 (524)
T 2j04_B 487 TCTKWNETSAGGKCYAFSNSAGLL 510 (524)
T ss_dssp CCEEECCSTTTTTEEEEECTTSEE
T ss_pred EEEECCCCCCccHHHHhhccCceE
Confidence 7899999974 345555555544
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.91 E-value=3.6e-22 Score=228.22 Aligned_cols=280 Identities=14% Similarity=0.106 Sum_probs=197.6
Q ss_pred CCCEEEEEEccC---CCEEEEEECCCcEEEEECCC-C-eE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCc
Q 000992 75 GDSITAFDYLME---KEALIVGTSSGLLLLHSVDG-N-AT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148 (1196)
Q Consensus 75 ~~~v~~v~~spd---~~~La~as~dG~I~lw~~~~-~-~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d 148 (1196)
.+.|.+++|+|+ |+.|++++.||+|++||..+ + .+ .....|.+.|.+++|||||++||+++.|++|++|+..-.
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 118 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN 118 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence 468999999999 69999999999999999986 3 33 455667899999999999999999999999999974322
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEE--ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCcee
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISW--RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW--spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~ 226 (1196)
.... +.+|...+.+++| +|||++|+ +++ .|++|+|||..+++.......+. .+.
T Consensus 119 ~~~~----------------~~~~~~~v~~~~~~~~~~~~~l~-~~~------~dg~i~vwd~~~~~~~~~~~~~~-~~~ 174 (368)
T 3mmy_A 119 QAIQ----------------IAQHDAPVKTIHWIKAPNYSCVM-TGS------WDKTLKFWDTRSSNPMMVLQLPE-RCY 174 (368)
T ss_dssp EEEE----------------EEECSSCEEEEEEEECSSCEEEE-EEE------TTSEEEEECSSCSSCSEEEECSS-CEE
T ss_pred Ccee----------------eccccCceEEEEEEeCCCCCEEE-Ecc------CCCcEEEEECCCCcEEEEEecCC-Cce
Confidence 1111 1145567899999 99999999 565 46899999998998888777554 345
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCe----eEEEEccCCcceEEEE
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDL----LAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~----LAs~~~d~~~~~V~lW 302 (1196)
++.+. +..+++++.+ ..+.+|+..........+.......+..+++.+++.. +++++.|+ .|++|
T Consensus 175 ~~~~~--~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg---~i~i~ 243 (368)
T 3mmy_A 175 CADVI--YPMAVVATAE------RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG---RVAIH 243 (368)
T ss_dssp EEEEE--TTEEEEEEGG------GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS---EEEEE
T ss_pred EEEec--CCeeEEEeCC------CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC---cEEEE
Confidence 55555 4567777665 3599999765433222222223345667777766665 99999999 99999
Q ss_pred EecCCEE-EEEEEEEEecC------------CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEE
Q 000992 303 FFSNNHW-YLKYEIRYLRR------------DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKI 369 (1196)
Q Consensus 303 ~~~n~~w-ylkq~l~~~~~------------~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l 369 (1196)
+.....- .....+..+.. ....+.|+|++.. |.+++.+|.+. .|++. .+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~----iwd~~----------~~~~- 307 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRFS----FWDKD----------ARTK- 307 (368)
T ss_dssp ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-EEEEETTSCEE----EEETT----------TTEE-
T ss_pred ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE-EEEEccCCeEE----EEECC----------CCcE-
Confidence 9876421 01112222221 2477899998865 66666666654 23321 1111
Q ss_pred EEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 370 LVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 370 ~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
...+ .|..+|.+++|+|+| +.||+++.|+..+.|+.
T Consensus 308 ---------------~~~~~~~~~~v~~~~~s~~g--~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 308 ---------------LKTSEQLDQPISACCFNHNG--NIFAYASSYDWSKGHEF 344 (368)
T ss_dssp ---------------EEECCCCSSCEEEEEECTTS--SCEEEEECCCSTTCGGG
T ss_pred ---------------EEEecCCCCCceEEEECCCC--CeEEEEecccccccccc
Confidence 1222 367899999999999 89999999986665554
No 106
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.4e-22 Score=235.55 Aligned_cols=198 Identities=9% Similarity=-0.035 Sum_probs=151.1
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCe---E-EEee---------------------------------------
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---T-EVVG--------------------------------------- 113 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~---~-e~vg--------------------------------------- 113 (1196)
.+.+++|+|||+.|++ +.+|.|.+||..+++ . ....
T Consensus 6 p~~~v~~s~dg~~l~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCEEEECSSSSEEEE-EETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred cEEEEEecCCCCEEEE-EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 4678899999996554 568899999987765 2 1111
Q ss_pred ---------------eecCcEEEEEECCCCCEE-EEEeCCceEEEEecc---CceeeeeecccccCccccccCccccCCC
Q 000992 114 ---------------RVEGGVRFISPSPDGDLL-GVTTGFGQILVMTHD---WDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 114 ---------------~~~~~I~~~awSPDg~~L-A~~s~d~tV~l~~~~---~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.|.+.|.+++|||||+.| |+++.|++|++|+.. +..+.....+ .+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------~~~~ 150 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------------CFSK 150 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--------------ECSS
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--------------cCCC
Confidence 122369999999999996 888899999999743 3333222211 2346
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE----EeccCCCceeEEEEcCC---CCeEEEEecCCCCC
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA----SSELKAFMGAVLEWMPS---GANIAAVYDRKSEN 247 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~----~~e~~~~~v~slawsPd---G~~IAs~s~d~~~~ 247 (1196)
.+.+++|+|||++|+ +++ .++.|++|+..+++... ++.+|.+.+.+++|+|+ |++|++++.|.
T Consensus 151 ~v~~~~~sp~~~~l~-~~~------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~--- 220 (450)
T 2vdu_B 151 RPNAISIAEDDTTVI-IAD------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE--- 220 (450)
T ss_dssp CEEEEEECTTSSEEE-EEE------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS---
T ss_pred CceEEEEcCCCCEEE-EEe------CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC---
Confidence 789999999999999 565 36899999987776543 56678899999999999 99999999864
Q ss_pred CCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 248 KCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 248 ~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.|++|+.. |.....+ + ..+...|.+++|+ ||++||+++.|+ +|++|++.+..
T Consensus 221 ---~i~vwd~~~~~~~~~~-~-~~h~~~v~~~~~s-d~~~l~s~~~d~---~v~vwd~~~~~ 273 (450)
T 2vdu_B 221 ---HIKISHYPQCFIVDKW-L-FGHKHFVSSICCG-KDYLLLSAGGDD---KIFAWDWKTGK 273 (450)
T ss_dssp ---CEEEEEESCTTCEEEE-C-CCCSSCEEEEEEC-STTEEEEEESSS---EEEEEETTTCC
T ss_pred ---cEEEEECCCCceeeee-e-cCCCCceEEEEEC-CCCEEEEEeCCC---eEEEEECCCCc
Confidence 69999953 4333222 2 2345789999999 999999999999 99999998765
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.90 E-value=3.6e-21 Score=227.15 Aligned_cols=298 Identities=8% Similarity=-0.045 Sum_probs=201.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEE------eeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCc
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEV------VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~------vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d 148 (1196)
..+.+++|+|++..+++++.+|+|.+||..+++... ...|.+.|.+++|+|||+++++++.|++|.+|+. ...
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 457799999988888888889999999999876542 1235678999999999999999999999999973 233
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEE
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sl 228 (1196)
.+.... .|...+..++|+|||++++ +++ ..+++|++||..+|+.......+ +.+..+
T Consensus 203 ~~~~~~----------------~~~~~~~~~~~~~~~~~l~-~~~-----~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~ 259 (433)
T 3bws_A 203 YKATVD----------------LTGKWSKILLYDPIRDLVY-CSN-----WISEDISVIDRKTKLEIRKTDKI-GLPRGL 259 (433)
T ss_dssp EEEEEE----------------CSSSSEEEEEEETTTTEEE-EEE-----TTTTEEEEEETTTTEEEEECCCC-SEEEEE
T ss_pred EEEEEc----------------CCCCCeeEEEEcCCCCEEE-EEe-----cCCCcEEEEECCCCcEEEEecCC-CCceEE
Confidence 332222 2345678999999999886 343 14689999999899888877653 457999
Q ss_pred EEcCCCCeEEEEecCCCCC--CCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCee-EEEEccCCcceEEEEEe
Q 000992 229 EWMPSGANIAAVYDRKSEN--KCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLL-AAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~--~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~L-As~~~d~~~~~V~lW~~ 304 (1196)
+|+|+|++|++++...... ....|.+|+.. |.....+. +...+..++|+|||+.| ++++.++ .|++|+.
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~---~v~v~d~ 332 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG----PPGNKRHIVSGNTENKIYVSDMCCS---KIEVYDL 332 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----EEECEEEEEECSSTTEEEEEETTTT---EEEEEET
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----CCCCcceEEECCCCCEEEEEecCCC---EEEEEEC
Confidence 9999999999887532100 13579999964 43332221 12368899999999755 5556777 8999999
Q ss_pred cCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 305 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
.+... .+.+. +......+.|+|++.. +.+...+... .....++....+..+.+|+.... ..
T Consensus 333 ~~~~~--~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~----------~~~~~~~~g~~dg~v~~~d~~~~-----~~ 393 (433)
T 3bws_A 333 KEKKV--QKSIP-VFDKPNTIALSPDGKY-LYVSCRGPNH----------PTEGYLKKGLVLGKVYVIDTTTD-----TV 393 (433)
T ss_dssp TTTEE--EEEEE-CSSSEEEEEECTTSSE-EEEEECCCCC----------TTTCTTSCCSSCCEEEEEETTTT-----EE
T ss_pred CCCcE--EEEec-CCCCCCeEEEcCCCCE-EEEEecCCCc----------cccccccccccceEEEEEECCCC-----cE
Confidence 87642 23333 2223488999999865 4554432100 00000000001123444443221 11
Q ss_pred eeeecCCCCEEEEEEecCCCCCEEEEEEC-CCcEEEEeCCC
Q 000992 385 LFSLKFPTAVTEMAFYSKSSKNCLAAILS-DGCLCVVDLPA 424 (1196)
Q Consensus 385 ~~~l~~~~~V~~Vafspdg~~~~lAs~~~-dg~v~lw~~~~ 424 (1196)
...+.....+.+++|+|+| +.|++++. |++|++|++++
T Consensus 394 ~~~~~~~~~~~~~~~s~dg--~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 394 KEFWEAGNQPTGLDVSPDN--RYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEECSSSEEEEEECTTS--CEEEEEETTTTEEEEEEETT
T ss_pred EEEecCCCCCceEEEcCCC--CEEEEEECCCCeEEEEEecC
Confidence 1233445678999999999 89888875 99999999863
No 108
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.90 E-value=1.9e-21 Score=225.90 Aligned_cols=288 Identities=12% Similarity=0.015 Sum_probs=197.5
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccc-c-ccccCCCCCCEEEEEEcc-CCCEEEEEECCC
Q 000992 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE-I-EHIDLEPGDSITAFDYLM-EKEALIVGTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~-l-~~~~~~~~~~v~~v~~sp-d~~~La~as~dG 97 (1196)
.+.+++|.+ +++.|++++.|+.|..|++ ..+............ + ..++....+.|.+++|+| +++.|++++.||
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDL--ENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEEC--CCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEEC--CCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 899999999 9999999999999999999 443321111100000 0 000001246899999999 788999999999
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCC---CCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCC
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPD---GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPD---g~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
.|++||..+++....-.+...+.+++|+|+ +.+|++++.|+.|.+|+.. ...+. .+.+|.
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~----------------~~~~~~ 186 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH----------------ILQGHR 186 (408)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE----------------EECCCC
T ss_pred eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee----------------eecCCC
Confidence 999999998876533346788999999995 4599999999999998632 22221 122566
Q ss_pred CCeEEEEEccCCce-EEEeeccccccCCCCEEEEEECCCCc-EEEEe---------------ccCCCceeEEEEcCCCCe
Q 000992 174 SFKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDSGT-LQASS---------------ELKAFMGAVLEWMPSGAN 236 (1196)
Q Consensus 174 ~~v~~isWspDG~~-lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~---------------e~~~~~v~slawsPdG~~ 236 (1196)
..+.+++|+|||.+ |+ +++ .++.|++||..++. ..... .+|.+.+.+++|+|+|++
T Consensus 187 ~~v~~~~~~~~~~~ll~-~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 259 (408)
T 4a11_B 187 QEILAVSWSPRYDYILA-TAS------ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259 (408)
T ss_dssp SCEEEEEECSSCTTEEE-EEE------TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred CcEEEEEECCCCCcEEE-EEc------CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence 78899999999995 77 554 46899999986654 33333 457788999999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeCCC-eeEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE
Q 000992 237 IAAVYDRKSENKCPSIVFYERNG-LERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq 313 (1196)
|++++.++ .|.+|+... .....+... ......+.-......+..++.++.++ .|++|+..+... ..
T Consensus 260 l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~v~d~~~~~~--~~ 328 (408)
T 4a11_B 260 LLTVGTDN------RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS---TIAVYTVYSGEQ--IT 328 (408)
T ss_dssp EEEEETTS------CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT---EEEEEETTTCCE--EE
T ss_pred EEEecCCC------eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC---EEEEEECcCCcc--ee
Confidence 99999864 599999643 221110000 00011122222233455566667777 899999987652 33
Q ss_pred EEEEecCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 314 EIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 314 ~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
.+..+......+.|+|++.. |.+++.+|.+.+
T Consensus 329 ~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~i 360 (408)
T 4a11_B 329 MLKGHYKTVDCCVFQSNFQE-LYSGSRDCNILA 360 (408)
T ss_dssp EECCCSSCEEEEEEETTTTE-EEEEETTSCEEE
T ss_pred eeccCCCeEEEEEEcCCCCE-EEEECCCCeEEE
Confidence 44444334488999999865 677777776653
No 109
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=1.3e-21 Score=248.25 Aligned_cols=322 Identities=12% Similarity=0.070 Sum_probs=209.8
Q ss_pred CCCEEEEEEccCCCEEEEEEC-CC-----cEEEEECCCCeEE-Eeeeec------------------------CcEEEEE
Q 000992 75 GDSITAFDYLMEKEALIVGTS-SG-----LLLLHSVDGNATE-VVGRVE------------------------GGVRFIS 123 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~-dG-----~I~lw~~~~~~~e-~vg~~~------------------------~~I~~~a 123 (1196)
...|.+++|||||+.|++++. || +|.+||..+++.. +...+. .+|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 8999999987654 332222 2378999
Q ss_pred ECCCCCEEEEEeCCceEEEEeccCc---eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCC
Q 000992 124 PSPDGDLLGVTTGFGQILVMTHDWD---LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKL 200 (1196)
Q Consensus 124 wSPDg~~LA~~s~d~tV~l~~~~~d---~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~ 200 (1196)
|||||+.||+++. ++|.+|+.... ... ++..+...+..++|||||++|| .++
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~----------------~l~~~~~~~~~~~~SPDG~~la-~~~------- 170 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVR----------------QLTHGEGFATDAKLSPKGGFVS-FIR------- 170 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCC----------------BCCCSSSCEEEEEECTTSSEEE-EEE-------
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEE----------------EcccCCcccccccCCCCCCEEE-EEe-------
Confidence 9999999999987 89988864322 111 1113345678999999999999 443
Q ss_pred CCEEEEEECCCCcEEEEeccCCCc----------------eeEEEEcCCCCeEEEEecCCCCC-----------------
Q 000992 201 HKRLKVWERDSGTLQASSELKAFM----------------GAVLEWMPSGANIAAVYDRKSEN----------------- 247 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~~e~~~~~----------------v~slawsPdG~~IAs~s~d~~~~----------------- 247 (1196)
++.|++||..+|+.......+... +.+++|||||++||+++.+.+..
T Consensus 171 ~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 171 GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 368999999788776655433321 37899999999999997653100
Q ss_pred ----------CCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC--cceEEEEEecCCEEEEEEE
Q 000992 248 ----------KCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE--YDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 248 ----------~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~--~~~V~lW~~~n~~wylkq~ 314 (1196)
....|.+|+.++ ...........+...+.+++| |||+.||+++.++. ...|.+|+..+... +..
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~ 327 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVL 327 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--EEE
T ss_pred eecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--EEE
Confidence 112677788654 332221111123457999999 99999998876432 23799999887653 223
Q ss_pred EEEecCC----cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecC
Q 000992 315 IRYLRRD----GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1196)
Q Consensus 315 l~~~~~~----~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~ 390 (1196)
+..+... ...+.|+|++. .+.....+|.... |..+. +|. + ..+. .+
T Consensus 328 ~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l----~~~~~---------~~~-~--~~l~-------------~~ 377 (741)
T 2ecf_A 328 AHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHL----YRIDS---------KGK-A--AALT-------------HG 377 (741)
T ss_dssp EEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEE----EEECS---------SSC-E--EESC-------------CS
T ss_pred EEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEE----EEEcC---------CCC-e--eeee-------------ec
Confidence 3332211 13678999987 4555555554322 21110 122 1 1111 23
Q ss_pred CCCEEEE-EEecCCCCCEEEEEEC-CC--cEEEEeCCC-CCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEE
Q 000992 391 PTAVTEM-AFYSKSSKNCLAAILS-DG--CLCVVDLPA-PDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVS 465 (1196)
Q Consensus 391 ~~~V~~V-afspdg~~~~lAs~~~-dg--~v~lw~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~ 465 (1196)
...|.++ +||||| +.|+..+. ++ +++||+++. ......+.+ ...+..++|+|||+.|++.
T Consensus 378 ~~~v~~~~~~s~dg--~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-------------~~~~~~~~~spdg~~l~~~ 442 (741)
T 2ecf_A 378 NWSVDELLAVDEKA--GLAYFRAGIESARESQIYAVPLQGGQPQRLSK-------------APGMHSASFARNASVYVDS 442 (741)
T ss_dssp SSCEEEEEEEETTT--TEEEEEECSSCTTCBEEEEEETTCCCCEECCC-------------SCSEEEEEECTTSSEEEEE
T ss_pred ceEEEeEeEEeCCC--CEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-------------CCCceEEEECCCCCEEEEE
Confidence 4567777 599999 77755444 44 899999863 111111111 2357899999999988876
Q ss_pred ecCC
Q 000992 466 HHGP 469 (1196)
Q Consensus 466 ~~~~ 469 (1196)
..+.
T Consensus 443 ~~~~ 446 (741)
T 2ecf_A 443 WSNN 446 (741)
T ss_dssp EEET
T ss_pred ecCC
Confidence 5543
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.90 E-value=1.7e-20 Score=218.33 Aligned_cols=260 Identities=12% Similarity=0.061 Sum_probs=180.8
Q ss_pred EEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE-EEEECCCcEEEEECCCCeEE-Ee
Q 000992 35 LFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL-IVGTSSGLLLLHSVDGNATE-VV 112 (1196)
Q Consensus 35 l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~L-a~as~dG~I~lw~~~~~~~e-~v 112 (1196)
+.+++.++.|..||+ .+++.. .. +.. ...+.+++|+|||+.| ++++.||+|++||..++++. .+
T Consensus 5 ~vs~~~d~~v~v~d~--~~~~~~---~~----~~~-----~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~ 70 (391)
T 1l0q_A 5 YIANSESDNISVIDV--TSNKVT---AT----IPV-----GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV 70 (391)
T ss_dssp EEEETTTTEEEEEET--TTTEEE---EE----EEC-----SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEEC--CCCeEE---EE----eec-----CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE
Confidence 344566889999999 444431 11 121 2468999999999987 56668999999999887764 33
Q ss_pred eeecCcEEEEEECCCCCEEEEEe-CCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 113 GRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 113 g~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
.. ...|.+++|||||+.|++++ .+++|.+|+.. ...+.... +...+..++|+|||++++.
T Consensus 71 ~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-----------------~~~~~~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 71 PA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-----------------TGKSPLGLALSPDGKKLYV 132 (391)
T ss_dssp EC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------------CSSSEEEEEECTTSSEEEE
T ss_pred EC-CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-----------------CCCCcceEEECCCCCEEEE
Confidence 33 45899999999999887665 56999998743 22222211 1235689999999998851
Q ss_pred eeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEecc
Q 000992 191 LSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINE 269 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~ 269 (1196)
+++ .+++|++||..+|+.......+. .+..++|+|+|+.|+.++.. ...|.+|+... ..... +.
T Consensus 133 ~~~------~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~--~~- 197 (391)
T 1l0q_A 133 TNN------GDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFD-----SMSISVIDTVTNSVIDT--VK- 197 (391)
T ss_dssp EET------TTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEE--EE-
T ss_pred EeC------CCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCC-----CCEEEEEECCCCeEEEE--Ee-
Confidence 333 46899999998999888877554 45899999999988544332 35799999653 32222 22
Q ss_pred CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 270 QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 270 ~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
....+..++|+|||+.|++++.+.....|++|+..+... .+.+..+ .....+.|+|++...+.....+|.+.
T Consensus 198 -~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~ 269 (391)
T 1l0q_A 198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--TARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVS 269 (391)
T ss_dssp -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred -cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE--EEEEecC-CCccEEEEccCCCEEEEEcCCCCEEE
Confidence 234689999999999999998421122899999987652 2333322 23378999999876334444566664
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.90 E-value=7.1e-21 Score=224.66 Aligned_cols=323 Identities=13% Similarity=0.006 Sum_probs=215.4
Q ss_pred CEEEEE---EccCCCEEEEEE--------------CCCcEEEE--ECCCCeEEEeee--ecCcEEEEEECCCCCEEEEEe
Q 000992 77 SITAFD---YLMEKEALIVGT--------------SSGLLLLH--SVDGNATEVVGR--VEGGVRFISPSPDGDLLGVTT 135 (1196)
Q Consensus 77 ~v~~v~---~spd~~~La~as--------------~dG~I~lw--~~~~~~~e~vg~--~~~~I~~~awSPDg~~LA~~s 135 (1196)
.+..++ |+|+++.+.+++ .+|++.+| |..++....+.. ....+.+++|||++.++++++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 141 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLL 141 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBT
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeC
Confidence 456666 777776665443 33433444 444453332221 235577999999888888888
Q ss_pred CCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE
Q 000992 136 GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL 214 (1196)
Q Consensus 136 ~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l 214 (1196)
.+++|.+|+.. .......... .+.+|...+.+++|+|||++++ +++ .+++|++||..+|+.
T Consensus 142 ~~~~i~~~d~~~g~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~-s~~------~d~~v~~~d~~~~~~ 203 (433)
T 3bws_A 142 EDEGMDVLDINSGQTVRLSPPE-----------KYKKKLGFVETISIPEHNELWV-SQM------QANAVHVFDLKTLAY 203 (433)
T ss_dssp TSSSEEEEETTTCCEEEECCCH-----------HHHTTCCEEEEEEEGGGTEEEE-EEG------GGTEEEEEETTTCCE
T ss_pred CCCeEEEEECCCCeEeeecCcc-----------cccccCCceeEEEEcCCCEEEE-EEC------CCCEEEEEECCCceE
Confidence 88999998733 3332211110 1225667789999999999999 565 368999999989999
Q ss_pred EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEc-
Q 000992 215 QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR- 292 (1196)
Q Consensus 215 ~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~- 292 (1196)
..+...+...+.+++|+|+|+.+++++.. ...|.+|+. +|.... .++ ....+..++|+|||+.|++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~i~~~d~~~~~~~~--~~~--~~~~~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 204 KATVDLTGKWSKILLYDPIRDLVYCSNWI-----SEDISVIDRKTKLEIR--KTD--KIGLPRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp EEEEECSSSSEEEEEEETTTTEEEEEETT-----TTEEEEEETTTTEEEE--ECC--CCSEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEcCCCCCeeEEEEcCCCCEEEEEecC-----CCcEEEEECCCCcEEE--Eec--CCCCceEEEEcCCCCEEEEEECC
Confidence 98888888889999999999988655532 357999995 443322 222 2346999999999999999884
Q ss_pred -------cCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEc
Q 000992 293 -------FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVID 365 (1196)
Q Consensus 293 -------d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viD 365 (1196)
|+ .|++|+..+... ...+.. ......+.|+|++...+.....+|.+.
T Consensus 275 ~~~~~~~dg---~i~~~d~~~~~~--~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~v~-------------------- 328 (433)
T 3bws_A 275 ASNQESGGG---RLGIYSMDKEKL--IDTIGP-PGNKRHIVSGNTENKIYVSDMCCSKIE-------------------- 328 (433)
T ss_dssp SCTTCSCCE---EEEEEETTTTEE--EEEEEE-EECEEEEEECSSTTEEEEEETTTTEEE--------------------
T ss_pred CCccccCCC---eEEEEECCCCcE--EeeccC-CCCcceEEECCCCCEEEEEecCCCEEE--------------------
Confidence 55 899999987653 222222 223477899998875333334444432
Q ss_pred CCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC---------------CCcEEEEeCCCCCcccc
Q 000992 366 GSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS---------------DGCLCVVDLPAPDMLED 430 (1196)
Q Consensus 366 g~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~---------------dg~v~lw~~~~~~~~~~ 430 (1196)
+|++.... ....+.+...+.+++|+|+| +.|++++. ||.|++|+..+......
T Consensus 329 -----v~d~~~~~-----~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 329 -----VYDLKEKK-----VQKSIPVFDKPNTIALSPDG--KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp -----EEETTTTE-----EEEEEECSSSEEEEEECTTS--SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred -----EEECCCCc-----EEEEecCCCCCCeEEEcCCC--CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE
Confidence 22222110 11233456678999999999 88888876 57999999976433311
Q ss_pred ccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 431 LEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 431 ~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+.+ ...+..++|+|+|++|+++... .+.+.+|.+
T Consensus 397 ~~~-------------~~~~~~~~~s~dg~~l~~~~~~-d~~i~v~~~ 430 (433)
T 3bws_A 397 WEA-------------GNQPTGLDVSPDNRYLVISDFL-DHQIRVYRR 430 (433)
T ss_dssp EEC-------------SSSEEEEEECTTSCEEEEEETT-TTEEEEEEE
T ss_pred ecC-------------CCCCceEEEcCCCCEEEEEECC-CCeEEEEEe
Confidence 111 2368999999999988876541 267888876
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.2e-22 Score=231.55 Aligned_cols=258 Identities=12% Similarity=0.036 Sum_probs=179.4
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 000992 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~ 106 (1196)
.+..++..+++++.|+.|+.||+ .+++.. .++. .+.|.++.|+|+ +++++.||+|++|+.++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~--~~~~~~---~~~~----------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~ 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQL--KDSKTI---TTIT----------TPNPRTGGEHPA---IISRGPCNRLLLLYPGN 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEE--SSSSCE---EEEE----------EECCCTTCCCCS---EEEECSTTEEEEEETTT
T ss_pred hhcCCCCEEEEECCCCcEEEEEC--CCCcEE---EEEe----------cCCceeeeeCCc---eEEecCCCeEEEEEccC
Confidence 34467788999999999999999 444431 1111 135677788888 99999999999997763
Q ss_pred ---------Ce-EE-EeeeecCcEEEEEECC--CCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccC
Q 000992 107 ---------NA-TE-VVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 107 ---------~~-~e-~vg~~~~~I~~~awSP--Dg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
++ +. ..-.|.+.|.+++|+| +|++||+++.|++|++|+.. ...+..... .+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---------------~~ 169 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA---------------KS 169 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---------------CS
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---------------CC
Confidence 33 22 2212457899999999 99999999999999998732 222111100 22
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE-EEecc-CCCceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ-ASSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~-~~~e~-~~~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
...+.+++|+|||++|| +++ .|++|+|||..+|+.. .+++. |.+.+.+++|+|+|++||+++++
T Consensus 170 ~~~i~~~~~~pdg~~la-sg~------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~------- 235 (343)
T 3lrv_A 170 DVEYSSGVLHKDSLLLA-LYS------PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ------- 235 (343)
T ss_dssp SCCCCEEEECTTSCEEE-EEC------TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-------
T ss_pred CCceEEEEECCCCCEEE-EEc------CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-------
Confidence 34578999999999999 665 4689999999899887 77777 99999999999999999999953
Q ss_pred eEEEEeCCCee-EEEEEecc--CCCCcE--EEEEEccCCCeeEEEEc-cCCcceEEEEEecC--CEEEEEEEEEEecCCc
Q 000992 251 SIVFYERNGLE-RSSFDINE--QIDSTV--ELLKWNCMSDLLAAVVR-FEEYDSVKICFFSN--NHWYLKYEIRYLRRDG 322 (1196)
Q Consensus 251 ~V~~~e~nGl~-~~~f~l~~--~~~~~V--~~laWSpDg~~LAs~~~-d~~~~~V~lW~~~n--~~wylkq~l~~~~~~~ 322 (1196)
.|++|+..... .. .+.. .+...+ ..++|+|+|++||+++. |+ .|++|+... ..|-. ...
T Consensus 236 ~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~---~i~v~~~~~~~~~~~~--------~~~ 302 (343)
T 3lrv_A 236 TVVCFDLRKDVGTL--AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN---SLTIYKFDKKTKNWTK--------DEE 302 (343)
T ss_dssp BEEEEETTSSTTCB--SSCCCBC-----CCEEEEECTTSSEEEEEETTTT---EEEEEEECTTTCSEEE--------EEE
T ss_pred eEEEEEcCCCCcce--eecccccccccccceEEEECCCCCEEEEecCCCC---cEEEEEEcccccceEe--------cCc
Confidence 69999954221 11 0110 011223 36999999999999998 77 899999853 33532 011
Q ss_pred EEEEEcc---CCCceEEEEecCCcEE
Q 000992 323 IRFMWHP---TKPLQLICWTLDGQIT 345 (1196)
Q Consensus 323 ~~v~Wsp---~~~~~L~~~~~~g~~~ 345 (1196)
..+.|+| +.. .+.+.+.+|.+.
T Consensus 303 ~~~~~~~~~~~~~-~l~~~~~d~~~~ 327 (343)
T 3lrv_A 303 SALCLQSDTADFT-DMDVVCGDGGIA 327 (343)
T ss_dssp EECCC----CCCC-EEEEEEETTEEE
T ss_pred eeEecCccccccc-eeEEEecCCceE
Confidence 4567777 433 356666666543
No 113
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.89 E-value=5e-22 Score=233.76 Aligned_cols=304 Identities=10% Similarity=0.025 Sum_probs=189.5
Q ss_pred CCEEEEEE---ccCCCEEEEEECCCcEEEEECCC------Ce--EE---EeeeecCcEEEEEE-----------------
Q 000992 76 DSITAFDY---LMEKEALIVGTSSGLLLLHSVDG------NA--TE---VVGRVEGGVRFISP----------------- 124 (1196)
Q Consensus 76 ~~v~~v~~---spd~~~La~as~dG~I~lw~~~~------~~--~e---~vg~~~~~I~~~aw----------------- 124 (1196)
..+..+.| +|++..|+.++.++.|.+|+... .. .. ... +...+.+++|
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQ-TGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEE-CSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEe-cCCCeeeEeecCCccccccccCCCcce
Confidence 46777888 45555566666788899997521 11 11 111 2334444444
Q ss_pred ---CCCCCEEEEEeCCceEEEEeccC-ceeeeeecccccCccccccCccccCCCCeEEEEEcc--------CCceEEEee
Q 000992 125 ---SPDGDLLGVTTGFGQILVMTHDW-DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--------DGKYFATLS 192 (1196)
Q Consensus 125 ---SPDg~~LA~~s~d~tV~l~~~~~-d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp--------DG~~lAsvs 192 (1196)
+|++.+||+++.|++|++|+... +......+.. +.+|.+.|.+++|+| ||++|| ++
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~-----------~~gH~~~v~~v~~~p~~~~~~~~d~~~la-s~ 162 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGG-----------KSGHHNFVNDIDIADVYSADNRLAEQVIA-SV 162 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECT-----------TTSCSSCEEEEEEEEEECTTCSEEEEEEE-EE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecc-----------cCCCCCceEEEEEccccccccCCCCCEEE-EE
Confidence 56777899999999999997432 2222222222 337889999999998 999999 56
Q ss_pred ccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCC-CeeEEEE-----
Q 000992 193 EFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERN-GLERSSF----- 265 (1196)
Q Consensus 193 s~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f----- 265 (1196)
+ .|++|||||..++.......+|...+.+++|+|+|. +||+++.| ..|++|+.. |....+.
T Consensus 163 s------~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d------~~v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 163 G------DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN------GNIRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp E------TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT------SEEEEEETTCCC----------
T ss_pred E------CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC------CEEEEEECCCCcccccccccCC
Confidence 5 479999999877877777778889999999999985 89999886 479999853 2211110
Q ss_pred -------Eec----------cCCCCcEEEEEEc-cCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEE
Q 000992 266 -------DIN----------EQIDSTVELLKWN-CMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMW 327 (1196)
Q Consensus 266 -------~l~----------~~~~~~V~~laWS-pDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~W 327 (1196)
... ..+...|..++|+ |||+.|++++.|+ ++++|++..... ...+..+......+.+
T Consensus 231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~---~i~vwd~~~~~~--~~~l~~~~~~~~~~~~ 305 (393)
T 4gq1_A 231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSG---AWLRWNLFANND--YNEISDSTMKLGPKNL 305 (393)
T ss_dssp CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTS---EEEEEEC---------------------CC
T ss_pred cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCC---CEEEEECccCCC--CceEeeecCccccEEE
Confidence 000 1123568889987 8999999999999 999999865321 1111110000001111
Q ss_pred ccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCE
Q 000992 328 HPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNC 407 (1196)
Q Consensus 328 sp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~ 407 (1196)
.|+ + +.+.....+..+.|+|...+..
T Consensus 306 ~~~-----------------------------------~-------------------~~~~~~~~~~~~~~~~~~~~~~ 331 (393)
T 4gq1_A 306 LPN-----------------------------------V-------------------QGISLFPSLLGACPHPRYMDYF 331 (393)
T ss_dssp SCS-----------------------------------E-------------------EEECSSCCSSCCEECSSCTTEE
T ss_pred ccc-----------------------------------c-------------------ccccccCcceeEEEccCCCCEE
Confidence 110 0 0011111122233444332245
Q ss_pred EEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 408 LAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 408 lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+++++.||+|+||+..+..+..... .+...|+.++|+|||++||+++++ .+.++.+
T Consensus 332 ~~sgs~Dg~V~lwd~~~~~~~~~~~------------~~~~~V~svafspdG~~LA~as~~---Gv~lvrL 387 (393)
T 4gq1_A 332 ATAHSQHGLIQLINTYEKDSNSIPI------------QLGMPIVDFCWHQDGSHLAIATEG---SVLLTRL 387 (393)
T ss_dssp EEEETTTTEEEEEETTCTTCCEEEE------------ECSSCEEEEEECTTSSEEEEEESS---EEEEEEE
T ss_pred EEEECCCCEEEEEECCCCcEEEEec------------CCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEE
Confidence 6778889999999998654432211 233579999999999999999874 5666654
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.89 E-value=1e-20 Score=216.11 Aligned_cols=272 Identities=8% Similarity=-0.032 Sum_probs=195.2
Q ss_pred ceeEEeeecC---CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc
Q 000992 22 ILQFSALDIE---QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~---~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~ 98 (1196)
.+.+++|.++ +..|++++.|+.|..|++ ....... ... +.+| .+.|.+++|+|+++.|++++.||+
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~--~~~~~~~-~~~----~~~h----~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEV--QDSGQTI-PKA----QQMH----TGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEE--CTTSCEE-EEE----EEEC----SSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEc--CCCCcee-EEE----eccc----cCCEEEEEECcCCCEEEEEcCCCc
Confidence 8999999999 589999999999999999 4322111 011 3333 368999999999999999999999
Q ss_pred EEEEECCCCeEEEeeeecCcEEEEEE--CCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCC
Q 000992 99 LLLHSVDGNATEVVGRVEGGVRFISP--SPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg~~~~~I~~~aw--SPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
|++||..+++....-.|.+.|.+++| +|||++|++++.|++|.+|+ +...++.....+ ..
T Consensus 110 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------------~~ 172 (368)
T 3mmy_A 110 AKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-----------------ER 172 (368)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-----------------SC
T ss_pred EEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-----------------CC
Confidence 99999998876645557899999999 99999999999999999987 334433332221 24
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE--eccCCCceeEEEEcCCCCe----EEEEecCCCCCCC
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS--SELKAFMGAVLEWMPSGAN----IAAVYDRKSENKC 249 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~--~e~~~~~v~slawsPdG~~----IAs~s~d~~~~~~ 249 (1196)
+.++.+.++ .++ +++ .++.+++|+...+..... ..+.......+++.+++.. +++++.+
T Consensus 173 ~~~~~~~~~--~~~-~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------ 237 (368)
T 3mmy_A 173 CYCADVIYP--MAV-VAT------AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE------ 237 (368)
T ss_dssp EEEEEEETT--EEE-EEE------GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT------
T ss_pred ceEEEecCC--eeE-EEe------CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC------
Confidence 566777765 454 343 357899999965443322 2334455677777777665 8998886
Q ss_pred CeEEEEeCCCeeE--EEEEeccCCC-----------CcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE
Q 000992 250 PSIVFYERNGLER--SSFDINEQID-----------STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR 316 (1196)
Q Consensus 250 ~~V~~~e~nGl~~--~~f~l~~~~~-----------~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~ 316 (1196)
..|++|+.+.... ..+.+..+.. ..|.+++|||||++||+++.|+ .|++|++.+... .+.+.
T Consensus 238 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~--~~~~~ 312 (368)
T 3mmy_A 238 GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG---RFSFWDKDARTK--LKTSE 312 (368)
T ss_dssp SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS---CEEEEETTTTEE--EEECC
T ss_pred CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC---eEEEEECCCCcE--EEEec
Confidence 4799999654311 1112222211 2699999999999999999999 999999998653 23443
Q ss_pred EecCCcEEEEEccCCCceEEEEecCC
Q 000992 317 YLRRDGIRFMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 317 ~~~~~~~~v~Wsp~~~~~L~~~~~~g 342 (1196)
.+......+.|+|++.. |++++.+|
T Consensus 313 ~~~~~v~~~~~s~~g~~-l~~~s~d~ 337 (368)
T 3mmy_A 313 QLDQPISACCFNHNGNI-FAYASSYD 337 (368)
T ss_dssp CCSSCEEEEEECTTSSC-EEEEECCC
T ss_pred CCCCCceEEEECCCCCe-EEEEeccc
Confidence 33333488999999876 66666554
No 115
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=2.6e-21 Score=244.59 Aligned_cols=335 Identities=12% Similarity=0.062 Sum_probs=206.9
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecC---cEEEEEECCCCCEEEEEeCC---------ceEEE
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEG---GVRFISPSPDGDLLGVTTGF---------GQILV 142 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~---~I~~~awSPDg~~LA~~s~d---------~tV~l 142 (1196)
..+.+++|||||+.+++ +.||+|++||..+++.. +...+.. +|.+++|||||+.||+++.+ ++|.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 35788999999997766 78999999999987654 4444333 49999999999999999875 56777
Q ss_pred EeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 143 MTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 143 ~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
|+...... ..+.... ++...+..++|||||++||+ ++ ++.|++||..+|+.......+.
T Consensus 96 ~d~~~~~~--~~l~~~~-----------~~~~~~~~~~~SPdG~~la~-~~-------~~~i~~~~~~~g~~~~~~~~~~ 154 (723)
T 1xfd_A 96 SKIPHGDP--QSLDPPE-----------VSNAKLQYAGWGPKGQQLIF-IF-------ENNIYYCAHVGKQAIRVVSTGK 154 (723)
T ss_dssp EESSSCCC--EECCCTT-----------CCSCCCSBCCBCSSTTCEEE-EE-------TTEEEEESSSSSCCEEEECCCB
T ss_pred EECCCCce--EeccCCc-----------cccccccccEECCCCCEEEE-EE-------CCeEEEEECCCCceEEEecCCC
Confidence 75321111 1111111 23344678999999999994 44 3789999998888776655433
Q ss_pred Cc------------------eeEEEEcCCCCeEEEEecCCCC----------------------------CCCCeEEEEe
Q 000992 223 FM------------------GAVLEWMPSGANIAAVYDRKSE----------------------------NKCPSIVFYE 256 (1196)
Q Consensus 223 ~~------------------v~slawsPdG~~IAs~s~d~~~----------------------------~~~~~V~~~e 256 (1196)
.. +.+++|||||+.||+++.+.+. ....+|.+|+
T Consensus 155 ~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d 234 (723)
T 1xfd_A 155 EGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG 234 (723)
T ss_dssp TTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE
T ss_pred CCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEE
Confidence 22 2689999999999999865310 0112688888
Q ss_pred CCCeeEEEEEeccC-----CCCcEEEEEEccCCCeeEEEEccCC-cceEEEEEecCCEEEEEEEEEEecCCc-----EEE
Q 000992 257 RNGLERSSFDINEQ-----IDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSNNHWYLKYEIRYLRRDG-----IRF 325 (1196)
Q Consensus 257 ~nGl~~~~f~l~~~-----~~~~V~~laWSpDg~~LAs~~~d~~-~~~V~lW~~~n~~wylkq~l~~~~~~~-----~~v 325 (1196)
..+.... ..+..+ +...+.+++|||||++|++++.... ...|.+|+..+... ...+..+.... ..+
T Consensus 235 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~~~ 311 (723)
T 1xfd_A 235 LNGPTHD-LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC--TKKHEDESEAWLHRQNEEP 311 (723)
T ss_dssp SSSSCCC-EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE--EEEEEEECSSCCCCCCCCC
T ss_pred CCCCcee-EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc--eEEEEeccCCEEeccCCCc
Confidence 7553310 123221 1356899999999999988765432 23799999887653 22222221111 267
Q ss_pred EEccCCCceEEEE-e-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEee-ccccCCCCCceeeeec-CCCCEEE-EEEe
Q 000992 326 MWHPTKPLQLICW-T-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTP-LSLSLMPPPMYLFSLK-FPTAVTE-MAFY 400 (1196)
Q Consensus 326 ~Wsp~~~~~L~~~-~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~-l~~~~vpppm~~~~l~-~~~~V~~-Vafs 400 (1196)
.|+|++.. |.+. + .+|... .. ..|.+++ ..... + -+...+. ....+.. ++||
T Consensus 312 ~~spdg~~-l~~~~~~~~~~~~-----------~~--------~~l~~~d~~~~~~-~--~~~~~l~~~~~~~~~~~~~s 368 (723)
T 1xfd_A 312 VFSKDGRK-FFFIRAIPQGGRG-----------KF--------YHITVSSSQPNSS-N--DNIQSITSGDWDVTKILAYD 368 (723)
T ss_dssp EECTTSCS-EEEEEEECCSSSS-----------CE--------EEEEEECSSCCSS-S--CCCCBSCCSSSCEEEEEEEE
T ss_pred eEcCCCCe-EEEEEecccCCCc-----------ce--------eEEEEEeccCCCC-c--cceeEeecCCeEEEeeeEEc
Confidence 89999876 4443 2 233000 00 0122222 11110 0 0011121 2233544 6999
Q ss_pred cCCCCCEEEEEECC---CcEEEEeCCCCC--ccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCC
Q 000992 401 SKSSKNCLAAILSD---GCLCVVDLPAPD--MLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGP 469 (1196)
Q Consensus 401 pdg~~~~lAs~~~d---g~v~lw~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~ 469 (1196)
||| +.|+..+.+ ++++||+++... ....+.+. + .+...+..++|+|||+.++....+.
T Consensus 369 pdg--~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~-------~--~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 369 EKG--NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD-------L--VENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp TTT--TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT-------S--SSSCCCCEEEECTTSSEEEEECCSS
T ss_pred CCC--CEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc-------c--cCCCCeEEEEECCCCCEEEEEccCC
Confidence 999 888776665 789999986421 11111110 0 0234578899999999888765543
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.8e-22 Score=251.58 Aligned_cols=244 Identities=15% Similarity=0.186 Sum_probs=191.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC--CCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME--KEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd--~~~La~as~dG~I 99 (1196)
.+.+++|+++++.|++++.|+.|..|+. ..+... .+.+ +.+| .+.|.+++|+|+ ++.|++++.||+|
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~--~~~~~~-~~~~----l~~h----~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEV--EGETHK-LIDT----LTGH----EGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEE--ETTEEE-EEEE----ECCC----SSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEec--CCCCCc-ccee----ccCC----cCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 7899999999999999999999999998 432221 1111 3334 468999999998 9999999999999
Q ss_pred EEEECCCCe---EEEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEeccCc-eeeeeecccccCccccccCccccCC
Q 000992 100 LLHSVDGNA---TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWD-LLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 100 ~lw~~~~~~---~e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
++||..++. +.....|.+.|.+++|||+ |+.|++++.||+|++|+..-. ..... .+.+|.
T Consensus 80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~--------------~~~~~~ 145 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI--------------IIDAHA 145 (753)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE--------------EEECCS
T ss_pred EEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee--------------EeecCC
Confidence 999999875 3344557889999999999 999999999999999873211 11111 122456
Q ss_pred CCeEEEEEcc-------------CCceEEEeeccccccCCCCEEEEEECCCC----cEEEEeccCCCceeEEEEcCC---
Q 000992 174 SFKSPISWRG-------------DGKYFATLSEFCNSSKLHKRLKVWERDSG----TLQASSELKAFMGAVLEWMPS--- 233 (1196)
Q Consensus 174 ~~v~~isWsp-------------DG~~lAsvss~d~~~~~d~~irVWd~~~G----~l~~~~e~~~~~v~slawsPd--- 233 (1196)
..+.+++|+| ||.+|+ +++ .|++|++||..++ .+..+..+|.+.+.+++|+|+
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~-sgs------~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFV-TGG------ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEE-EEE------TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred CceEEEEecCcccccccccccCCCCCEEE-EEE------CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence 7889999999 699999 565 4689999998666 566677889999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
|++||+++.|+ .|++|+..... .....+. ..+...|.+++|+|||++||+++.|+ .|++|++..
T Consensus 219 ~~~l~s~s~Dg------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg---~I~vwd~~~ 285 (753)
T 3jro_A 219 RSYLASVSQDR------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLWKENL 285 (753)
T ss_dssp SEEEEEEESSS------CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS---CEECCBCCS
T ss_pred CCEEEEEecCC------EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC---EEEEEecCC
Confidence 99999999864 69999965321 0000111 12356799999999999999999999 899999874
No 117
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.88 E-value=1.2e-20 Score=224.22 Aligned_cols=271 Identities=11% Similarity=0.122 Sum_probs=194.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~ 153 (1196)
..|.+++| |++.|++|+.||+|++||..+++. .....|.+.|.+++| ||++||+++.||+|++|+. ....+..
T Consensus 134 ~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~- 208 (435)
T 1p22_A 134 KGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT- 208 (435)
T ss_dssp CCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE-
T ss_pred CcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE-
Confidence 56888766 899999999999999999988765 355557899999999 8899999999999999873 2322221
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE---EEeccCCCceeEEEE
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ---ASSELKAFMGAVLEW 230 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~---~~~e~~~~~v~slaw 230 (1196)
+.+|...+.+++|++ .+++ +++ .|++|++||..++... ....+|.+.+.+++|
T Consensus 209 ---------------~~~h~~~v~~l~~~~--~~l~-s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 209 ---------------LIHHCEAVLHLRFNN--GMMV-TCS------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 264 (435)
T ss_dssp ---------------ECCCCSCEEEEECCT--TEEE-EEE------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred ---------------EcCCCCcEEEEEEcC--CEEE-Eee------CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence 225667889999974 4787 565 4689999999777654 567789999999999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
+|++|++++.| ..|++|+.. |..... +.. +...|.+++| ++++|++++.|+ +|++|++.+...
T Consensus 265 --~~~~l~s~~~d------g~i~vwd~~~~~~~~~--~~~-~~~~v~~~~~--~~~~l~~g~~dg---~i~iwd~~~~~~ 328 (435)
T 1p22_A 265 --DDKYIVSASGD------RTIKVWNTSTCEFVRT--LNG-HKRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGAC 328 (435)
T ss_dssp --ETTEEEEEETT------SEEEEEETTTCCEEEE--EEC-CSSCEEEEEE--ETTEEEEEETTS---CEEEEETTTCCE
T ss_pred --CCCEEEEEeCC------CeEEEEECCcCcEEEE--EcC-CCCcEEEEEe--CCCEEEEEeCCC---eEEEEECCCCCE
Confidence 89999999986 479999954 433333 332 3567999999 578999999999 999999987542
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC----CCCcee
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM----PPPMYL 385 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v----pppm~~ 385 (1196)
...+..+......+.|+ + ..|.+++.+|.+ ++|++..... +...+.
T Consensus 329 --~~~~~~h~~~v~~~~~~--~-~~l~sg~~dg~i-------------------------~vwd~~~~~~~~~~~~~~~~ 378 (435)
T 1p22_A 329 --LRVLEGHEELVRCIRFD--N-KRIVSGAYDGKI-------------------------KVWDLVAALDPRAPAGTLCL 378 (435)
T ss_dssp --EEEECCCSSCEEEEECC--S-SEEEEEETTSCE-------------------------EEEEHHHHTSTTSCTTTTEE
T ss_pred --EEEEeCCcCcEEEEEec--C-CEEEEEeCCCcE-------------------------EEEECCCCCCccccccchhe
Confidence 23333333233566662 2 235555555544 3443332111 111233
Q ss_pred eee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 386 FSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 386 ~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
.++ .|.+.|.+++| ++ +.|++++.||+|++|++.+.
T Consensus 379 ~~~~~h~~~v~~l~~--~~--~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 379 RTLVEHSGRVFRLQF--DE--FQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEECCCSSCCCCEEE--CS--SCEEECCSSSEEEEEC----
T ss_pred eeccCCCCCeEEEEe--CC--CEEEEEeCCCEEEEEECCCC
Confidence 444 48889999999 66 78999999999999999763
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.6e-21 Score=247.22 Aligned_cols=258 Identities=15% Similarity=0.148 Sum_probs=187.0
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC--CceEE
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD--GKYFA 189 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD--G~~lA 189 (1196)
..+|.+.|++++|||||++||+++.||+|++|+..... ..... .+.+|.+.|.+++|+|+ |++|+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~--~~~~~-----------~l~~h~~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLID-----------TLTGHEGPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE--EEEEE-----------EECCCSSCEEEEEECCTTSCSEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC--Cccce-----------eccCCcCceEEEEecCCCCCCEEE
Confidence 44578999999999999999999999999999743111 11111 23366788999999998 99999
Q ss_pred EeeccccccCCCCEEEEEECCCCc--EEEEeccCCCceeEEEEcCC--CCeEEEEecCCCCCCCCeEEEEeCCCe-eEEE
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYERNGL-ERSS 264 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~--l~~~~e~~~~~v~slawsPd--G~~IAs~s~d~~~~~~~~V~~~e~nGl-~~~~ 264 (1196)
+++ .|++|+|||..+|+ ......+|.+.+.+++|+|+ |+++++++.+ ..|++|+.... ....
T Consensus 72 -s~s------~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 72 -SCS------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSP 138 (753)
T ss_dssp -EEE------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCC
T ss_pred -EEe------CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcce
Confidence 565 46899999997776 66677789999999999999 9999999986 47999996432 1111
Q ss_pred EEeccCCCCcEEEEEEcc-------------CCCeeEEEEccCCcceEEEEEecCC--EEEEEEEEEEecCCcEEEEEcc
Q 000992 265 FDINEQIDSTVELLKWNC-------------MSDLLAAVVRFEEYDSVKICFFSNN--HWYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 265 f~l~~~~~~~V~~laWSp-------------Dg~~LAs~~~d~~~~~V~lW~~~n~--~wylkq~l~~~~~~~~~v~Wsp 329 (1196)
..+.. +...|.+++|+| ||++|++++.|+ +|++|++.+. .+.....+..+......+.|+|
T Consensus 139 ~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 214 (753)
T 3jro_A 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN---LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214 (753)
T ss_dssp EEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTS---CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred eEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCC---eEEEEeccCCcccceeeeeecCCCCcEEEEEecc
Confidence 22332 356799999999 699999999999 9999998754 2333344444444448899999
Q ss_pred CC--CceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee-eeecCCCCEEEEEEecCCCCC
Q 000992 330 TK--PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL-FSLKFPTAVTEMAFYSKSSKN 406 (1196)
Q Consensus 330 ~~--~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~-~~l~~~~~V~~Vafspdg~~~ 406 (1196)
++ +..+.+++.+|.+.+ |+. +....+..... ....|.+.|++++|+|+| +
T Consensus 215 ~~~~~~~l~s~s~Dg~I~i----wd~---------------------~~~~~~~~~~~~~~~~~~~~v~~l~~spdg--~ 267 (753)
T 3jro_A 215 TVLLRSYLASVSQDRTCII----WTQ---------------------DNEQGPWKKTLLKEEKFPDVLWRASWSLSG--N 267 (753)
T ss_dssp CCSSSEEEEEEESSSCEEE----EEE---------------------SSSSSCCBCCBSSSSCCSSCCCCEEECTTT--C
T ss_pred CCCCCCEEEEEecCCEEEE----ecC---------------------CCCCCcceeEEeccCCCCCceEEEEEcCCC--C
Confidence 94 445666666666543 332 21110100000 112367889999999999 8
Q ss_pred EEEEEECCCcEEEEeCCCCC
Q 000992 407 CLAAILSDGCLCVVDLPAPD 426 (1196)
Q Consensus 407 ~lAs~~~dg~v~lw~~~~~~ 426 (1196)
.|++++.||+|++|+..+..
T Consensus 268 ~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 268 VLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CEEEECSSSCEECCBCCSSS
T ss_pred EEEEEcCCCEEEEEecCCCC
Confidence 99999999999999998543
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=9.2e-22 Score=226.33 Aligned_cols=279 Identities=7% Similarity=-0.010 Sum_probs=186.1
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccc
Q 000992 79 TAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157 (1196)
Q Consensus 79 ~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~ 157 (1196)
....+++|+..|++|+.||+|++||..+++.. ... .+.|.+++|+|+ +++++.|++|++|+..... ....+..
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~-~~~~~~~ 113 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQI-TILDSKT 113 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEE-EEEETTT
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCce-EEeecCC
Confidence 33456788999999999999999999876542 332 467889999999 9999999999999754211 0001100
Q ss_pred ccCccccccCccccCCCCeEEEEEcc--CCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCC
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRG--DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSG 234 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWsp--DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG 234 (1196)
. +.+. ....+|.+.+.+++|+| +|++|+ +++ .|++|++||..+|+...... .+...+.+++|+|+|
T Consensus 114 ~---~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~-s~s------~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg 182 (343)
T 3lrv_A 114 N---KVLR-EIEVDSANEIIYMYGHNEVNTEYFI-WAD------NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS 182 (343)
T ss_dssp C---CEEE-EEECCCSSCEEEEECCC---CCEEE-EEE------TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS
T ss_pred c---ceeE-EeecCCCCCEEEEEcCCCCCCCEEE-EEe------CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC
Confidence 0 0000 00114557799999999 999999 565 46899999998999877664 345578999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq 313 (1196)
++||+|+.|+ .|++|+.. |... ...+...+...|.+|+|||||.+||+++ ++ +|++||+.+..-. +
T Consensus 183 ~~lasg~~dg------~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~---~v~iwd~~~~~~~--~ 249 (343)
T 3lrv_A 183 LLLALYSPDG------ILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ---TVVCFDLRKDVGT--L 249 (343)
T ss_dssp CEEEEECTTS------CEEEEESSCTTSC-CEECCCCTTSCEEEEEECTTSSEEEEEE-SS---BEEEEETTSSTTC--B
T ss_pred CEEEEEcCCC------EEEEEECCCCCCC-ccEEeccCCCCEEEEEEeCCCCEEEEEe-CC---eEEEEEcCCCCcc--e
Confidence 9999998864 69999954 3322 0134432467899999999999999999 44 6999998764311 0
Q ss_pred EEEE---ecCC--cEEEEEccCCCceEEEEec-CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeee
Q 000992 314 EIRY---LRRD--GIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 387 (1196)
Q Consensus 314 ~l~~---~~~~--~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~ 387 (1196)
.+.. +... ...+.|+|++.. |.+++. ++.+. +|.+....- . ..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~s~~d~~i~-------------------------v~~~~~~~~--~---~~ 298 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDIDDSGKN-MIAYSNESNSLT-------------------------IYKFDKKTK--N---WT 298 (343)
T ss_dssp SSCCCBC-----CCEEEEECTTSSE-EEEEETTTTEEE-------------------------EEEECTTTC--S---EE
T ss_pred eecccccccccccceEEEECCCCCE-EEEecCCCCcEE-------------------------EEEEccccc--c---eE
Confidence 1110 0000 145889998765 455444 44443 333211100 0 00
Q ss_pred ecCCCCEEEEEEec---CCCCCEEEEEECCCcEEEEeCC
Q 000992 388 LKFPTAVTEMAFYS---KSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 388 l~~~~~V~~Vafsp---dg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
. .++..++|+| ++ +.+++++.||++.++-..
T Consensus 299 ~---~~~~~~~~~~~~~~~--~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 299 K---DEESALCLQSDTADF--TDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp E---EEEEECCC----CCC--CEEEEEEETTEEEEEEEC
T ss_pred e---cCceeEecCcccccc--ceeEEEecCCceEEEEec
Confidence 0 3466778888 76 789999999999888654
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.88 E-value=1.3e-19 Score=210.78 Aligned_cols=267 Identities=11% Similarity=0.044 Sum_probs=184.2
Q ss_pred CEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEE-EEEeCCceEEEEec-cCceeeeeecccccCcccc
Q 000992 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLL-GVTTGFGQILVMTH-DWDLLYENPLEELAEGFDV 164 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~L-A~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~V 164 (1196)
..+++++.||+|++||..++++. .+.. ...+.+++|||||+.| ++++.|++|.+|+. ..+.+.....
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--------- 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--------- 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeec-CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC---------
Confidence 45778889999999999987764 4443 4569999999999987 56668999999873 3333332221
Q ss_pred ccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeE-EEEecC
Q 000992 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANI-AAVYDR 243 (1196)
Q Consensus 165 s~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~I-As~s~d 243 (1196)
...+.+++|+|||++++ +++ ..+++|++||..+|+.......+ ..+.+++|+|+|+.| ++++.+
T Consensus 73 --------~~~v~~~~~spdg~~l~-~~~-----~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~ 137 (391)
T 1l0q_A 73 --------GSSPQGVAVSPDGKQVY-VTN-----MASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGD 137 (391)
T ss_dssp --------SSSEEEEEECTTSSEEE-EEE-----TTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTT
T ss_pred --------CCCccceEECCCCCEEE-EEE-----CCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCC
Confidence 12678999999999887 443 14689999999889888877644 456999999999988 455443
Q ss_pred CCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeE-EEEccCCcceEEEEEecCCEEEEEEEEEEecCC
Q 000992 244 KSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLA-AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD 321 (1196)
Q Consensus 244 ~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LA-s~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~ 321 (1196)
..|.+|+.. |..... +.. ...+..++|+|||+.|+ +++.++ .|++|+..+... ...+.. ...
T Consensus 138 ------~~v~~~d~~~~~~~~~--~~~--~~~~~~~~~~~dg~~l~~~~~~~~---~v~~~d~~~~~~--~~~~~~-~~~ 201 (391)
T 1l0q_A 138 ------KTVSVINTVTKAVINT--VSV--GRSPKGIAVTPDGTKVYVANFDSM---SISVIDTVTNSV--IDTVKV-EAA 201 (391)
T ss_dssp ------TEEEEEETTTTEEEEE--EEC--CSSEEEEEECTTSSEEEEEETTTT---EEEEEETTTTEE--EEEEEC-SSE
T ss_pred ------CEEEEEECCCCcEEEE--Eec--CCCcceEEECCCCCEEEEEeCCCC---EEEEEECCCCeE--EEEEec-CCC
Confidence 579999954 443332 222 24578999999999884 555666 899999987642 223322 122
Q ss_pred cEEEEEccCCCceEEEEe---cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEE
Q 000992 322 GIRFMWHPTKPLQLICWT---LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMA 398 (1196)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~---~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Va 398 (1196)
...+.|+|++.. |.+.. .++. +.+|+++.. .....+.....+.+++
T Consensus 202 ~~~~~~~~~g~~-l~~~~~~~~~~~-------------------------v~~~d~~~~-----~~~~~~~~~~~~~~~~ 250 (391)
T 1l0q_A 202 PSGIAVNPEGTK-AYVTNVDKYFNT-------------------------VSMIDTGTN-----KITARIPVGPDPAGIA 250 (391)
T ss_dssp EEEEEECTTSSE-EEEEEECSSCCE-------------------------EEEEETTTT-----EEEEEEECCSSEEEEE
T ss_pred ccceEECCCCCE-EEEEecCcCCCc-------------------------EEEEECCCC-----eEEEEEecCCCccEEE
Confidence 377899998865 44443 2232 233332211 0112333344678999
Q ss_pred EecCCCCCEE-EEEECCCcEEEEeCCCCCcc
Q 000992 399 FYSKSSKNCL-AAILSDGCLCVVDLPAPDML 428 (1196)
Q Consensus 399 fspdg~~~~l-As~~~dg~v~lw~~~~~~~~ 428 (1196)
|+|+| +.| ++++.|++|++|+..+....
T Consensus 251 ~s~dg--~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 251 VTPDG--KKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp ECTTS--SEEEEEETTTTEEEEEETTTTEEE
T ss_pred EccCC--CEEEEEcCCCCEEEEEECCCCcEE
Confidence 99999 776 66678999999999864333
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.88 E-value=2.1e-21 Score=230.97 Aligned_cols=244 Identities=11% Similarity=0.131 Sum_probs=178.5
Q ss_pred CCCEEEEEEccC-CCEEEEEECCCcEEEEECCC-----------CeEEEeeeecCcEEEEEECCCCC-EEEEEeCCceEE
Q 000992 75 GDSITAFDYLME-KEALIVGTSSGLLLLHSVDG-----------NATEVVGRVEGGVRFISPSPDGD-LLGVTTGFGQIL 141 (1196)
Q Consensus 75 ~~~v~~v~~spd-~~~La~as~dG~I~lw~~~~-----------~~~e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~ 141 (1196)
.+.|.+++|+|+ +..||+++.+|+|++|+..+ ..+..+..|.+.|.+++|+|++. .|++++.||+|.
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 468999999998 78999999999999999864 22334455788999999999999 999999999999
Q ss_pred EEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCC---cEEEE
Q 000992 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQAS 217 (1196)
Q Consensus 142 l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~ 217 (1196)
+|+..-.......+.. ...+.+|...+.+++|+| ++.+|| +++ .+++|+|||..++ .....
T Consensus 208 vwd~~~~~~~~~~~~~--------~~~~~~h~~~v~~v~~~p~~~~~l~-s~~------~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 208 LWDINATPKEHRVIDA--------KNIFTGHTAVVEDVAWHLLHESLFG-SVA------DDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp EEETTSCCBGGGEEEC--------SEEECCCSSCEEEEEECSSCTTEEE-EEE------TTSEEEEEETTCSCSSSCSEE
T ss_pred EEeCCCCCCCCceecc--------ceeecCCCCCEeeeEEeCCCCCEEE-EEe------CCCeEEEEECCCCCCCcceeE
Confidence 9974321100000000 123446778899999999 677888 454 4799999999766 56666
Q ss_pred eccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCC--eeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEcc
Q 000992 218 SELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNG--LERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRF 293 (1196)
Q Consensus 218 ~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nG--l~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d 293 (1196)
...|.+.+.+++|+|+|+ +||+++.+ ..|++|+... .... .+.. +...|.+|+|+|+|+ +||+++.|
T Consensus 273 ~~~~~~~v~~i~~~p~~~~~l~tg~~d------g~v~vwd~~~~~~~~~--~~~~-h~~~v~~i~~sp~~~~~l~s~~~d 343 (430)
T 2xyi_A 273 VDAHTAEVNCLSFNPYSEFILATGSAD------KTVALWDLRNLKLKLH--SFES-HKDEIFQVQWSPHNETILASSGTD 343 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCTTSCSE--EEEC-CSSCEEEEEECSSCTTEEEEEETT
T ss_pred eecCCCCeEEEEeCCCCCCEEEEEeCC------CeEEEEeCCCCCCCeE--Eeec-CCCCEEEEEECCCCCCEEEEEeCC
Confidence 778889999999999998 68898885 4799999543 2222 2222 356899999999995 69999999
Q ss_pred CCcceEEEEEecCCEE------------EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 294 EEYDSVKICFFSNNHW------------YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~w------------ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
+ +|++|++....- .+...+..+......+.|+|+++..++....+|.+.
T Consensus 344 ~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~ 404 (430)
T 2xyi_A 344 R---RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404 (430)
T ss_dssp S---CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred C---cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEE
Confidence 8 899999986210 011122222223488999999886567776677664
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.88 E-value=1e-20 Score=225.03 Aligned_cols=246 Identities=9% Similarity=0.108 Sum_probs=184.4
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccc--------cccceeeccccccccccCCCCCCEEEEEEccCCC-EEE
Q 000992 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQN--------ERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALI 91 (1196)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~-~La 91 (1196)
.+.+++|.++ +..|++++.++.|..|++. .. ... .+.+ +.+| .+.|.+++|+|++. .|+
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~--~~~~~~~~~~~~~-~~~~----~~~h----~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYT--KHPSKPEPSGECQ-PDLR----LRGH----QKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGG--GSCSSCCTTCCCC-CSEE----EECC----SSCCCCEEECTTSTTEEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECC--CcccccCccccCC-CcEE----ecCC----CCCeEEEEeCCCCCCeEE
Confidence 6888999997 6788888999999999993 31 010 0111 3333 45799999999999 999
Q ss_pred EEECCCcEEEEECCCCe--------EEEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEeccCceeeeeecccccCcc
Q 000992 92 VGTSSGLLLLHSVDGNA--------TEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 92 ~as~dG~I~lw~~~~~~--------~e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~ 162 (1196)
+++.||+|++|+..++. ......|.+.|.+++|+| ++.+||+++.|++|.+|+..-.. .....
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~------- 270 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-TSKPS------- 270 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-SSSCS-------
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-CCcce-------
Confidence 99999999999998621 123445688999999999 78899999999999998732110 00000
Q ss_pred ccccCccccCCCCeEEEEEccCCce-EEEeeccccccCCCCEEEEEECCC-CcEEEEeccCCCceeEEEEcCCCC-eEEE
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDS-GTLQASSELKAFMGAVLEWMPSGA-NIAA 239 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~-lAsvss~d~~~~~d~~irVWd~~~-G~l~~~~e~~~~~v~slawsPdG~-~IAs 239 (1196)
..+.+|...+.+++|+|+|++ || +++ .+++|+|||..+ +....++..|.+.+.+++|+|+|+ +||+
T Consensus 271 ----~~~~~~~~~v~~i~~~p~~~~~l~-tg~------~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 271 ----HTVDAHTAEVNCLSFNPYSEFILA-TGS------ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp ----EEEECCSSCEEEEEECSSCTTEEE-EEE------TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred ----eEeecCCCCeEEEEeCCCCCCEEE-EEe------CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 012256678899999999984 66 555 468999999866 566778888999999999999995 6888
Q ss_pred EecCCCCCCCCeEEEEeCCCee-------------EEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEec
Q 000992 240 VYDRKSENKCPSIVFYERNGLE-------------RSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~nGl~-------------~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~ 305 (1196)
++.++ .|++|+.+... .-.+.+. .+...|.+++|+|++. +||+++.|+ +|++|++.
T Consensus 340 ~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~s~dg---~i~iw~~~ 409 (430)
T 2xyi_A 340 SGTDR------RLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWIICSVSEDN---IMQVWQMA 409 (430)
T ss_dssp EETTS------CCEEEEGGGTTCCCCHHHHHHCCTTEEEECC-CCSSCEEEEEECSSSTTEEEEEETTS---EEEEEEEC
T ss_pred EeCCC------cEEEEeCCCCccccCccccccCCcceEEEcC-CCCCCceEEEECCCCCCEEEEEECCC---CEEEeEcc
Confidence 88764 69999964310 1112222 2356799999999999 999999999 99999987
Q ss_pred CC
Q 000992 306 NN 307 (1196)
Q Consensus 306 n~ 307 (1196)
+.
T Consensus 410 ~~ 411 (430)
T 2xyi_A 410 EN 411 (430)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.87 E-value=1.9e-21 Score=228.81 Aligned_cols=251 Identities=11% Similarity=-0.013 Sum_probs=156.8
Q ss_pred eecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--------CCCEEEEEECCCcE
Q 000992 28 LDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--------EKEALIVGTSSGLL 99 (1196)
Q Consensus 28 ~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--------d~~~La~as~dG~I 99 (1196)
+.+++..|.+++.|+.|..||. ..++.... . .-..+.+| .+.|.+|+|+| |++.||+++.|++|
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~--~~~~~~~~-~-~~~~~~gH----~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIIT--KNETIITQ-H-VLGGKSGH----HNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEE--ETTEEEEE-E-EECTTTSC----SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred cCCCCCEEEEEeCCCcEEEEEC--CCCcccee-e-eecccCCC----CCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 3455667889999999999998 44432110 0 00114445 46899999998 89999999999999
Q ss_pred EEEECCCCe-EEEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEecc-CceeeeeecccccCc-cccc--------cC
Q 000992 100 LLHSVDGNA-TEVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHD-WDLLYENPLEELAEG-FDVH--------EP 167 (1196)
Q Consensus 100 ~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~-~~Vs--------~t 167 (1196)
+|||..++. +...-.|...|.+++|+|++. +||+++.|++|++|+.. .....+...+..... ..++ ..
T Consensus 169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp EEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred EEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 999987643 333334578899999999985 79999999999998632 111111110000000 0000 11
Q ss_pred ccccCCCCeEEEEEc-cCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc---------------
Q 000992 168 ELSSSFSFKSPISWR-GDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM--------------- 231 (1196)
Q Consensus 168 qf~~~~~~v~~isWs-pDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws--------------- 231 (1196)
...+|.+.+.++.|+ |||++++ +++ .+++++|||..++.....+..+.+.+..+.++
T Consensus 249 ~~~~~~~~v~~v~~~~~dg~~l~-s~s------~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGSDGSGIL-AMC------KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGA 321 (393)
T ss_dssp ---CCSSSCSEEEEETTTTCEEE-EEC------TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCC
T ss_pred ecccccccceeeeeecCCCCEEE-EEe------CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeE
Confidence 122677889999987 8999999 565 46899999997777665554444433333333
Q ss_pred ---C--CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 232 ---P--SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 232 ---P--dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
| ++.++|+++.| ..|++|+.. |.....+ . .+...|.+|+|||||++||+++.++ +.||.+.
T Consensus 322 ~~~~~~~~~~~~sgs~D------g~V~lwd~~~~~~~~~~--~-~~~~~V~svafspdG~~LA~as~~G----v~lvrL~ 388 (393)
T 4gq1_A 322 CPHPRYMDYFATAHSQH------GLIQLINTYEKDSNSIP--I-QLGMPIVDFCWHQDGSHLAIATEGS----VLLTRLM 388 (393)
T ss_dssp EECSSCTTEEEEEETTT------TEEEEEETTCTTCCEEE--E-ECSSCEEEEEECTTSSEEEEEESSE----EEEEEEG
T ss_pred EEccCCCCEEEEEECCC------CEEEEEECCCCcEEEEe--c-CCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEEe
Confidence 3 33456777665 579999954 4333322 1 2345799999999999999999887 8888765
Q ss_pred C
Q 000992 306 N 306 (1196)
Q Consensus 306 n 306 (1196)
.
T Consensus 389 g 389 (393)
T 4gq1_A 389 G 389 (393)
T ss_dssp G
T ss_pred C
Confidence 4
No 124
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=1.5e-19 Score=239.10 Aligned_cols=417 Identities=10% Similarity=-0.015 Sum_probs=255.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC-----
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS----- 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d----- 96 (1196)
.+...+|. ++.|++++.. .|+.|++ ..++. .. +..+ .+.+.+++|||||+.||+++.+
T Consensus 16 ~~~~~~~S--~~~iaf~~~~-~l~~~~~--~gg~~-~~-------lt~~----~~~v~~~~~SPDG~~la~~s~~~~~~~ 78 (1045)
T 1k32_A 16 LLLNPDIH--GDRIIFVCCD-DLWEHDL--KSGST-RK-------IVSN----LGVINNARFFPDGRKIAIRVMRGSSLN 78 (1045)
T ss_dssp CCEEEEEE--TTEEEEEETT-EEEEEET--TTCCE-EE-------EECS----SSEEEEEEECTTSSEEEEEEEESTTCC
T ss_pred eEeCcEEe--CCEEEEEECC-cEEEEEC--CCCcE-EE-------eeeC----CCcccCeEECCCCCEEEEEEeeccCCC
Confidence 56677777 4688888774 6999998 44432 11 3333 3579999999999999988754
Q ss_pred -CcEEEEECCCCeEEEeeeecCcE-------EEEEECCCCCEEEEEeCC----c--eEEEEeccCceeeeeecccccCcc
Q 000992 97 -GLLLLHSVDGNATEVVGRVEGGV-------RFISPSPDGDLLGVTTGF----G--QILVMTHDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 97 -G~I~lw~~~~~~~e~vg~~~~~I-------~~~awSPDg~~LA~~s~d----~--tV~l~~~~~d~~~~~~l~~~~~~~ 162 (1196)
++|.+|+..+++...+..|...+ .+++|||||+++++++.+ + .|.+|+....... .+..
T Consensus 79 ~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~--~l~~----- 151 (1045)
T 1k32_A 79 TADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV--PLNL----- 151 (1045)
T ss_dssp EEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE--ECCS-----
T ss_pred CCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE--EecC-----
Confidence 37999999998877666667778 999999999977776644 3 3544432211111 1111
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccc------cCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCCC
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS------SKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~------~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
.....++||| | +++ +++.+.. -.++...+||... .|++.. ..+|.+.+.+++|+|+ .
T Consensus 152 -----------~~~~~~~~sp-G-~l~-~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~-l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 152 -----------GPATHILFAD-G-RRV-IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK-IVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp -----------CSCSEEEEET-T-EEE-EEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE-EECCSSCCEEEEEETT-E
T ss_pred -----------CCcceeeeCC-C-EEE-EeccCCCccccccccCCCcCCEEEECCCCCeEE-CcCCCCcccceEEeCC-E
Confidence 1124678999 9 777 5532110 0123456666432 355444 4778999999999999 5
Q ss_pred eEEEEecCCCCCCCCeEEEEe--CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE
Q 000992 236 NIAAVYDRKSENKCPSIVFYE--RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e--~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq 313 (1196)
++++++.+. .+.+|. .+|.... .+..+ ..+..++|||||+.||.+. ++ .|.+|+..... +.
T Consensus 216 l~~~~~~dg------~~~l~~~~~~g~~~~--~l~~~--~~~~~~~~SpDG~~la~~~-~~---~i~~~d~~~~~--l~- 278 (1045)
T 1k32_A 216 IYFITDIDG------FGQIYSTDLDGKDLR--KHTSF--TDYYPRHLNTDGRRILFSK-GG---SIYIFNPDTEK--IE- 278 (1045)
T ss_dssp EEEEECTTS------SCEEEEEETTSCSCE--ECCCC--CSSCEEEEEESSSCEEEEE-TT---EEEEECTTTCC--EE-
T ss_pred EEEEEeccC------ceEEEEEeCCCCcce--EecCC--CCcceeeEcCCCCEEEEEe-CC---EEEEecCCceE--ee-
Confidence 555555432 355564 4443222 22222 2356789999999999985 55 79999984322 11
Q ss_pred EEEE-----------ecCCcEEEEEc-cCCCceEEEEecCCcEEEEE---------------EEEeeecCC-CeeEEEEc
Q 000992 314 EIRY-----------LRRDGIRFMWH-PTKPLQLICWTLDGQITTYN---------------FIWTTAVME-NSTALVID 365 (1196)
Q Consensus 314 ~l~~-----------~~~~~~~v~Ws-p~~~~~L~~~~~~g~~~~~~---------------~~~~~~~~d-~~~v~viD 365 (1196)
.+.. +......+.|| |++.. |.+.. ++.+..++ ..+.+.++| ..++.+.+
T Consensus 279 ~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~-la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~ 356 (1045)
T 1k32_A 279 KIEIGDLESPEDRIISIPSKFAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTR 356 (1045)
T ss_dssp ECCCCCCCBCCSEEEECGGGGEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEET
T ss_pred eeccCcccccccccccccccceeeecCCCCCE-EEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEEC
Confidence 2211 00123678999 99865 44443 34332211 111122221 12344455
Q ss_pred CCEEE-EeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecc
Q 000992 366 GSKIL-VTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACIS 443 (1196)
Q Consensus 366 g~~l~-lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~ 443 (1196)
...+. ++++..... ..+ .+...+.+++||||| +.||+++.+++|++|++.+........
T Consensus 357 ~~~l~~~~d~~~~~~------~~l~~~~~~~~~~~~SpDG--~~la~~~~~~~v~~~d~~tg~~~~~~~----------- 417 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKA------EKFEENLGNVFAMGVDRNG--KFAVVANDRFEIMTVDLETGKPTVIER----------- 417 (1045)
T ss_dssp TEEEEEEEETTTCCE------EECCCCCCSEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEE-----------
T ss_pred CCceEEEEECCCCCc------eEecCCccceeeeEECCCC--CEEEEECCCCeEEEEECCCCceEEecc-----------
Confidence 55565 666543211 122 456789999999999 899999999999999997643321111
Q ss_pred cccCCcEEEEEEecCCeEEEEEecCC--------CCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceee
Q 000992 444 ETAFGSVIHLIWLGSHLLLSVSHHGP--------RHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKV 515 (1196)
Q Consensus 444 ~~~~~~v~~l~~~~d~~lla~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1196)
.+...+..++|+|||++|++++.+. ...+.+|++. + .. .
T Consensus 418 -~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~--~----------------------------g~--~ 464 (1045)
T 1k32_A 418 -SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME--G----------------------------RK--I 464 (1045)
T ss_dssp -CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT--T----------------------------TE--E
T ss_pred -CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC--C----------------------------Cc--E
Confidence 2334678899999999888776532 2456666551 1 01 1
Q ss_pred eeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEE
Q 000992 516 STQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEY 550 (1196)
Q Consensus 516 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~ 550 (1196)
.........+..+.+++ +++.+++...++....|
T Consensus 465 ~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 465 FAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp EECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEE
T ss_pred EEeeCCCcccCCceEcC-CCCEEEEEecccCCcCc
Confidence 11223344566677888 88888888776655555
No 125
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=1.3e-20 Score=239.08 Aligned_cols=348 Identities=12% Similarity=0.115 Sum_probs=214.2
Q ss_pred ceeEEeeecCCCEEEEEeC-CC-----cEEEEecccccccccceeeccccccccccCCC-------------------C-
Q 000992 22 ILQFSALDIEQNRLFFASS-AN-----NIYSAQLSSFQNERASIKTAISAEIEHIDLEP-------------------G- 75 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~-----~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~- 75 (1196)
.+..++|.+|+..|++++. ++ .|+.||+ .+++.. .+.. .....| +
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~--~~g~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDI--GSGQTR-LLVD------SKVVLPGTETLSDEEKARRERQRIAAM 108 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEET--TTCCEE-EEEC------GGGTC--------------------CC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEEC--CCCcee-Eccc------hhhcccccccccchhhhhhhhhhhccc
Confidence 5788999999999999987 76 7999998 444431 1111 010000 0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCC---eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN---ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~---~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
..|.+++|||||+.|++++. ++|.+||..++ .+..+..+...+.+++|||||+.||+++. ++|.+|+.......
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~- 185 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQM- 185 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEE-
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEE-
Confidence 23788999999999999986 99999999987 66544555788999999999999999985 58988874322111
Q ss_pred eecccccCccccccC--cc--ccCCCCeEEEEEccCCceEEEeecccccc---------------------------CCC
Q 000992 153 NPLEELAEGFDVHEP--EL--SSSFSFKSPISWRGDGKYFATLSEFCNSS---------------------------KLH 201 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~t--qf--~~~~~~v~~isWspDG~~lAsvss~d~~~---------------------------~~d 201 (1196)
.+.... ...+... .| ......+..++|||||++|| +++.+... ...
T Consensus 186 -~~~~~~-~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~-~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 186 -QLTADG-STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA-YARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp -ECCCCC-CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE-EEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred -EeccCC-ccceeccccceeeeeccccccceEECCCCCEEE-EEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 111110 0000000 00 00011246799999999999 55433200 011
Q ss_pred CEEEEEECCC-CcEEEEec--cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCC---cE
Q 000992 202 KRLKVWERDS-GTLQASSE--LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDS---TV 275 (1196)
Q Consensus 202 ~~irVWd~~~-G~l~~~~e--~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~---~V 275 (1196)
..|++||..+ |+...... ++...+.+++| |||+.||+++.+.. .....|.+|+..+..... .+..+... .+
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~-~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD-QKKLDLVEVTLASNQQRV-LAHETSPTWVPLH 339 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT-SSEEEEEEEETTTCCEEE-EEEEECSSCCCCC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc-CCeEEEEEEECCCCceEE-EEEcCCCCcCCcC
Confidence 2788999977 87766543 36677899999 99999998765321 124678889865322221 12222222 34
Q ss_pred EEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEEEEEEEEecCCcEEE-EEccCCCceEEEEecCC--cEEEEEEEE
Q 000992 276 ELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIRF-MWHPTKPLQLICWTLDG--QITTYNFIW 351 (1196)
Q Consensus 276 ~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~~~v-~Wsp~~~~~L~~~~~~g--~~~~~~~~~ 351 (1196)
..++|||||++++++..++ +++||.+. +.. . ..+..+......+ .|+|++...+.....++ .+. .|
T Consensus 340 ~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~--~-~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~----l~ 409 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTG---FQHLYRIDSKGK--A-AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQ----IY 409 (741)
T ss_dssp SCCEECTTSCEEEEECTTS---SCEEEEECSSSC--E-EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBE----EE
T ss_pred CceEECCCCeEEEEecCCC---ccEEEEEcCCCC--e-eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEE----EE
Confidence 6899999999988888877 68888765 222 1 2222221222444 59999875333333332 222 22
Q ss_pred eeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECC----CcEEEEeCCC
Q 000992 352 TTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSD----GCLCVVDLPA 424 (1196)
Q Consensus 352 ~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~d----g~v~lw~~~~ 424 (1196)
.+.. +|.. ...+.....+.+++||||| +.|+...++ ..+.+|+..+
T Consensus 410 ~~~~---------~g~~----------------~~~l~~~~~~~~~~~spdg--~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 410 AVPL---------QGGQ----------------PQRLSKAPGMHSASFARNA--SVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEET---------TCCC----------------CEECCCSCSEEEEEECTTS--SEEEEEEEETTEEEEEEEEETTS
T ss_pred EEEc---------CCCC----------------eeecccCCCceEEEECCCC--CEEEEEecCCCCCCeEEEEEcCC
Confidence 2211 1211 1223334568899999999 788766544 4677777653
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.86 E-value=7.4e-20 Score=217.22 Aligned_cols=257 Identities=11% Similarity=0.040 Sum_probs=180.2
Q ss_pred CCEEEEEeCC------CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC---cEEEE
Q 000992 32 QNRLFFASSA------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG---LLLLH 102 (1196)
Q Consensus 32 ~~~l~~~s~~------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG---~I~lw 102 (1196)
+..+++++.+ +.|+.||. ..+.. .. +..+ .+.|.+++|||||+.|++++.++ +|++|
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~--~g~~~--~~------l~~~----~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~ 208 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDY--DGYNQ--FV------VHRS----PQPLMSPAWSPDGSKLAYVTFESGRSALVIQ 208 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEET--TSCSC--EE------EEEE----SSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcC--CCCCC--EE------EeCC----CCcceeeEEcCCCCEEEEEEecCCCcEEEEE
Confidence 5566666543 68999998 43322 11 3333 35799999999999999999886 99999
Q ss_pred ECCCCeEEEeeeecCcEEEEEECCCCCEEE-EEeCCce--EEEEeccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 103 SVDGNATEVVGRVEGGVRFISPSPDGDLLG-VTTGFGQ--ILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 103 ~~~~~~~e~vg~~~~~I~~~awSPDg~~LA-~~s~d~t--V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
|..+++...+..+.+.+.+++|||||+.|| +++.++. |.+|+....... .+ ..+...+.++
T Consensus 209 d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~--~l--------------~~~~~~~~~~ 272 (415)
T 2hqs_A 209 TLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--QV--------------TDGRSNNTEP 272 (415)
T ss_dssp ETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--EC--------------CCCSSCEEEE
T ss_pred ECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE--eC--------------cCCCCcccce
Confidence 999987765555678899999999999999 4555554 777653221111 11 1334567899
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
+|+|||++|+ +++.+ .+...|.+||..+|+... ...+...+.+++|||||++||+++.+.. ...|.+|+..+
T Consensus 273 ~~spdg~~l~-~~s~~---~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~spdG~~l~~~~~~~g---~~~i~~~d~~~ 344 (415)
T 2hqs_A 273 TWFPDSQNLA-FTSDQ---AGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLAT 344 (415)
T ss_dssp EECTTSSEEE-EEECT---TSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEEECSS---CEEEEEEETTT
T ss_pred EECCCCCEEE-EEECC---CCCcEEEEEECCCCCEEE-EecCCCcccCeEECCCCCEEEEEECcCC---ceEEEEEECCC
Confidence 9999999999 45421 123478889997776543 3345567889999999999999887532 45799999765
Q ss_pred eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
.... .+..+ ..+.+++|||||+.|++++.++....|.+|++.+.. .+.+..+......++|+|+...
T Consensus 345 ~~~~--~l~~~--~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~---~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 345 GGVQ--VLSST--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF---KARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp CCEE--ECCCS--SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC---EEECCCSSSEEEEEEECCCCCC
T ss_pred CCEE--EecCC--CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc---EEEeeCCCCCCcCCcccccccc
Confidence 3332 23322 378999999999999999987644479999987543 2233332223488999998643
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=1.2e-19 Score=223.04 Aligned_cols=350 Identities=11% Similarity=-0.003 Sum_probs=224.0
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC-
Q 000992 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV- 104 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~- 104 (1196)
.++|+++..+.+.+.++.|..||. .+++. +.+++. +..+..++|+|||+.|++++.||+|.+||.
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~--~t~~~---~~~i~~---------g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDG--DSKKI---VKVIDT---------GYAVHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEET--TTCCE---EEEEEC---------STTEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred cccCCCCEEEEEEcCCCeEEEEEC--CCceE---EEEEec---------CcccceEEECCCCCEEEEECCCCeEEEEECc
Confidence 358888765555677888999998 55554 222221 124889999999999999999999999999
Q ss_pred -CCCeEE-EeeeecCcEEEEEECC----CCCEEEEEe-CCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCe
Q 000992 105 -DGNATE-VVGRVEGGVRFISPSP----DGDLLGVTT-GFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 105 -~~~~~e-~vg~~~~~I~~~awSP----Dg~~LA~~s-~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.++++. .+. +..++..++||| ||++|++++ .+++|.+|+ ..++++..+...... +....|+ ....+
T Consensus 209 ~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~----~~~~~~~-~~~~v 282 (543)
T 1nir_A 209 AKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT----VDTQTYH-PEPRV 282 (543)
T ss_dssp SSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC----SSSCCEE-SCCCE
T ss_pred CCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc----cCccccc-cCCce
Confidence 666543 333 245689999999 999999998 489999996 445555544432211 0000111 12367
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE-EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~-~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..|.++|||..+. ++. .++++|.+||..+++... +.-++......++|+|||+++.++... ..+|.+|
T Consensus 283 ~~i~~s~~~~~~~-vs~-----~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~ 351 (543)
T 1nir_A 283 AAIIASHEHPEFI-VNV-----KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVI 351 (543)
T ss_dssp EEEEECSSSSEEE-EEE-----TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEE
T ss_pred EEEEECCCCCEEE-EEE-----CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC-----CCeEEEE
Confidence 8999999998777 454 246899999997765433 122345567899999999977665543 3579999
Q ss_pred eC-CCeeEEEEEec-cCCCCcEEEEEEccC-CCeeEEEE-ccCCcceEEEEEecC-----CEEEEEEEEEEecCCcEEEE
Q 000992 256 ER-NGLERSSFDIN-EQIDSTVELLKWNCM-SDLLAAVV-RFEEYDSVKICFFSN-----NHWYLKYEIRYLRRDGIRFM 326 (1196)
Q Consensus 256 e~-nGl~~~~f~l~-~~~~~~V~~laWSpD-g~~LAs~~-~d~~~~~V~lW~~~n-----~~wylkq~l~~~~~~~~~v~ 326 (1196)
+. +|.....+... .++.+....+ ++|+ |.++|++. .++ +|.+|++.. ..|...+++..+......+.
T Consensus 352 D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~---~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~ 427 (543)
T 1nir_A 352 DSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDG---SISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK 427 (543)
T ss_dssp ETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSS---EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred ECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCc---eEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE
Confidence 95 45544433321 2233333333 4677 77777765 456 899999976 22666778876544447899
Q ss_pred EccCCCceEEEEecCCcEEEEEEEEeeecC--CCeeEEEEcCCEE----EEeecccc-CCCCCceeeeecCCCCEEEEEE
Q 000992 327 WHPTKPLQLICWTLDGQITTYNFIWTTAVM--ENSTALVIDGSKI----LVTPLSLS-LMPPPMYLFSLKFPTAVTEMAF 399 (1196)
Q Consensus 327 Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~--d~~~v~viDg~~l----~lt~l~~~-~vpppm~~~~l~~~~~V~~Vaf 399 (1196)
+||+++. |.+.+.-+ ++ ....+.|+|-.+. ...|+..| .++ ++...|.+++|
T Consensus 428 ~~pdg~~-l~v~~~~~------------~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~--------~~~~~~~~~~~ 486 (543)
T 1nir_A 428 THPKSSH-LYVDTTFN------------PDARISQSVAVFDLKNLDAKYQVLPIAEWADLG--------EGAKRVVQPEY 486 (543)
T ss_dssp CCTTCCE-EEECCTTC------------SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCC--------SSCCEEEEEEE
T ss_pred cCCCCCc-EEEecCCC------------CCcccCceEEEEECCCCCCCeEEeechhhcccC--------CCCCceEeccC
Confidence 9999875 44433100 10 0123334433221 11111110 000 23567999999
Q ss_pred ecCCCCCEEEEEE-----CCCcEEEEeCCCCCccccccC
Q 000992 400 YSKSSKNCLAAIL-----SDGCLCVVDLPAPDMLEDLEG 433 (1196)
Q Consensus 400 spdg~~~~lAs~~-----~dg~v~lw~~~~~~~~~~~~g 433 (1196)
+||| +.+.+.. .|++|.+||..+..+..++.+
T Consensus 487 ~~~g--~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 487 NKRG--DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp CSSS--SEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CCCC--CEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 9999 7776552 379999999987655544443
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.86 E-value=4e-20 Score=219.48 Aligned_cols=307 Identities=13% Similarity=0.056 Sum_probs=202.3
Q ss_pred CEEEEEEccCCC-EEEEEE----CCC----cEEEEEC--CCCeEE---EeeeecCcEEEEEECC--------------CC
Q 000992 77 SITAFDYLMEKE-ALIVGT----SSG----LLLLHSV--DGNATE---VVGRVEGGVRFISPSP--------------DG 128 (1196)
Q Consensus 77 ~v~~v~~spd~~-~La~as----~dG----~I~lw~~--~~~~~e---~vg~~~~~I~~~awSP--------------Dg 128 (1196)
.|....|+++|. .+++++ .+| +|+|||. .+++.. ....|...+..++|+| .+
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 577788999886 444665 578 9999999 776532 2344567788888886 37
Q ss_pred CEEEEEeCC------ceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCC
Q 000992 129 DLLGVTTGF------GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHK 202 (1196)
Q Consensus 129 ~~LA~~s~d------~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~ 202 (1196)
..||+++.+ ++|.+|+.+....... .+|...+.+++|||||++|| .++.+ .++.
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l----------------~~~~~~v~~~~~Spdg~~la-~~s~~---~~~~ 203 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVV----------------HRSPQPLMSPAWSPDGSKLA-YVTFE---SGRS 203 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEE----------------EEESSCEEEEEECTTSSEEE-EEECT---TSSC
T ss_pred CEEEEEEecCCCCccceEEEEcCCCCCCEEE----------------eCCCCcceeeEEcCCCCEEE-EEEec---CCCc
Confidence 788888765 7999987543322211 13445789999999999999 45433 1346
Q ss_pred EEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEE-EEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEc
Q 000992 203 RLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIA-AVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWN 281 (1196)
Q Consensus 203 ~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IA-s~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWS 281 (1196)
+|++||..+|+... ...+.+.+.+++|||||+.|| +++.+. ...|.+|+..+.... .+.. +...+.+++||
T Consensus 204 ~i~~~d~~tg~~~~-l~~~~~~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~--~l~~-~~~~~~~~~~s 275 (415)
T 2hqs_A 204 ALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIR--QVTD-GRSNNTEPTWF 275 (415)
T ss_dssp EEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEE--ECCC-CSSCEEEEEEC
T ss_pred EEEEEECCCCcEEE-eecCCCcccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEE--eCcC-CCCcccceEEC
Confidence 99999998888764 445677899999999999998 444443 367999997543322 2332 34579999999
Q ss_pred cCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecC-CcEEEEEEEEeeecCCCee
Q 000992 282 CMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLD-GQITTYNFIWTTAVMENST 360 (1196)
Q Consensus 282 pDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~-g~~~~~~~~~~~~~~d~~~ 360 (1196)
|||+.|++++.+.+...|.+|+..+... ..+..+......+.|+|++.. |++...+ |..
T Consensus 276 pdg~~l~~~s~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~spdG~~-l~~~~~~~g~~---------------- 335 (415)
T 2hqs_A 276 PDSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADVSSDGKF-MVMVSSNGGQQ---------------- 335 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEEEEEEECTTSSE-EEEEEECSSCE----------------
T ss_pred CCCCEEEEEECCCCCcEEEEEECCCCCE---EEEecCCCcccCeEECCCCCE-EEEEECcCCce----------------
Confidence 9999999988643223577778776532 122222222267899999875 4443322 211
Q ss_pred EEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCC---cEEEEeCCCCCccccccCCcee
Q 000992 361 ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG---CLCVVDLPAPDMLEDLEGTEFV 437 (1196)
Q Consensus 361 v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg---~v~lw~~~~~~~~~~~~g~~~~ 437 (1196)
.|.+|++....+ ..+.....+.+++|+||| +.|++++.++ .|.+|++++. ....+.+
T Consensus 336 -------~i~~~d~~~~~~------~~l~~~~~~~~~~~spdg--~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~~---- 395 (415)
T 2hqs_A 336 -------HIAKQDLATGGV------QVLSSTFLDETPSLAPNG--TMVIYSSSQGMGSVLNLVSTDGR-FKARLPA---- 395 (415)
T ss_dssp -------EEEEEETTTCCE------EECCCSSSCEEEEECTTS--SEEEEEEEETTEEEEEEEETTSC-CEEECCC----
T ss_pred -------EEEEEECCCCCE------EEecCCCCcCCeEEcCCC--CEEEEEEcCCCccEEEEEECCCC-cEEEeeC----
Confidence 223333321110 112212368899999999 8999888877 7999998743 2212222
Q ss_pred eeeecccccCCcEEEEEEecCC
Q 000992 438 VEACISETAFGSVIHLIWLGSH 459 (1196)
Q Consensus 438 ~~~~~~~~~~~~v~~l~~~~d~ 459 (1196)
+.+.|+.++|+|.-
T Consensus 396 --------~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 396 --------TDGQVKFPAWSPYL 409 (415)
T ss_dssp --------SSSEEEEEEECCCC
T ss_pred --------CCCCCcCCcccccc
Confidence 34579999999953
No 129
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.86 E-value=8.4e-20 Score=211.74 Aligned_cols=269 Identities=11% Similarity=0.104 Sum_probs=186.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEE-EEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI-VGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La-~as~dG~I~ 100 (1196)
.+.+++|++|+..|+++++++ +..|+. ........ .. + ..+..++++++++.++ +++.||+|+
T Consensus 21 ~V~~v~fs~dg~~la~g~~~~-~~iw~~--~~~~~~~~--------~~--~---~~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLKS-FEIYNV--HPVAHIMS--------QE--M---RHLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSE-EEEEEE--TTEEEEEE--------EE--C---SCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred ceEEEEECCCCCEEEEEcCCE-EEEEec--CCcceeee--------ee--c---CCeEEEEEcCCCCEEEEEECCccEEE
Confidence 789999999999999888775 789998 33322100 00 1 2467788899999885 466779999
Q ss_pred EEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC--ceeeeeecccccCccccccCccccCCCCeE
Q 000992 101 LHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW--DLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 101 lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~--d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
+||..+++.. ... +...|.+++|+|++ +++++ |++|++|+..- ..+.... . ...
T Consensus 85 iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~~~----------------~---~~~ 141 (355)
T 3vu4_A 85 IWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRITDDI----------------R---FGG 141 (355)
T ss_dssp EEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSSCCE----------------E---EEE
T ss_pred EEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeEEec----------------c---CCc
Confidence 9999887654 443 57789999999985 44443 67899986321 1111111 0 123
Q ss_pred EEEEccCCceEEEee-ccccccCCCCEEEEEECCCCc----------------EEEEeccCCCceeEEEEcCCCCeEEEE
Q 000992 178 PISWRGDGKYFATLS-EFCNSSKLHKRLKVWERDSGT----------------LQASSELKAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 178 ~isWspDG~~lAsvs-s~d~~~~~d~~irVWd~~~G~----------------l~~~~e~~~~~v~slawsPdG~~IAs~ 240 (1196)
.+++++ .++| ++ + ..+++|+|||..++. +..++.+|.+.+.+++|+|+|++||++
T Consensus 142 ~~~~s~--~~la-~~sg-----~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 142 VCEFSN--GLLV-YSNE-----FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp EEEEET--TEEE-EEES-----SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEc--cEEE-EeCC-----CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 455666 6787 44 3 257899999997765 256778899999999999999999999
Q ss_pred ecCCCCCCCCe-EEEEeCC-CeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE----
Q 000992 241 YDRKSENKCPS-IVFYERN-GLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY---- 313 (1196)
Q Consensus 241 s~d~~~~~~~~-V~~~e~n-Gl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq---- 313 (1196)
+.| .+ |++|+.. |..... +. +.+...|.+++|||||++||+++.|+ +|++|++.+.......
T Consensus 214 s~d------~~~v~iwd~~~~~~~~~--~~~g~h~~~v~~~~~s~~~~~l~s~s~d~---~v~iw~~~~~~~~~~~~~~~ 282 (355)
T 3vu4_A 214 SQD------GTIIRVFKTEDGVLVRE--FRRGLDRADVVDMKWSTDGSKLAVVSDKW---TLHVFEIFNDQDNKRHALKG 282 (355)
T ss_dssp ETT------CSEEEEEETTTCCEEEE--EECTTCCSCEEEEEECTTSCEEEEEETTC---EEEEEESSCCSCCCSEETTT
T ss_pred eCC------CCEEEEEECCCCcEEEE--EEcCCCCCcEEEEEECCCCCEEEEEECCC---EEEEEEccCCCCcccccccc
Confidence 986 46 9999964 554443 44 22467899999999999999999999 9999998643210000
Q ss_pred --------------EEEEecCC---cEEEEEccCCCceEEEEecCCcEEEEEE
Q 000992 314 --------------EIRYLRRD---GIRFMWHPTKPLQLICWTLDGQITTYNF 349 (1196)
Q Consensus 314 --------------~l~~~~~~---~~~v~Wsp~~~~~L~~~~~~g~~~~~~~ 349 (1196)
...+.... ...++|+|++.. |.+++.+|.+..+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~-l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL-VVVWPHTRMIETFKV 334 (355)
T ss_dssp TEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE-EEEETTTTEEEEEEE
T ss_pred eeeccccccccceeEEEeccCCCCCceEEEEeCCCCE-EEEEeCCCeEEEEEE
Confidence 11111111 156889998764 788888887765443
No 130
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.86 E-value=6.8e-20 Score=212.53 Aligned_cols=295 Identities=10% Similarity=0.051 Sum_probs=193.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEe-ccCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMT-HDWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~-~~~d~~~~ 152 (1196)
.+.|.+++|+|||+.||+|+.+| +++|+.+++....... ..++..++|+|+++.++++ ++|++|++|+ .....+.+
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE-MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR 96 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE-CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee-cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence 46899999999999999998776 7899998765543333 3468999999999999664 5678999997 33444433
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slaws 231 (1196)
.. +...+.+++|++++..+ +. +++|+|||..++ ++..+.+. ....++++
T Consensus 97 ~~-----------------~~~~v~~v~~~~~~~~~---~~-------~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s 146 (355)
T 3vu4_A 97 IK-----------------VDAPVKDLFLSREFIVV---SY-------GDVISVFKFGNPWKRITDDIR---FGGVCEFS 146 (355)
T ss_dssp EE-----------------CSSCEEEEEECSSEEEE---EE-------TTEEEEEESSTTCCBSSCCEE---EEEEEEEE
T ss_pred EE-----------------CCCceEEEEEcCCEEEE---EE-------cCEEEEEECCCCceeeEEecc---CCceEEEE
Confidence 32 22467999999987333 32 478999999777 55554443 34567788
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCeeE--------------E-EEEeccCCCCcEEEEEEccCCCeeEEEEccCCc
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGLER--------------S-SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY 296 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~--------------~-~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~ 296 (1196)
| +++|.++... ...|++|+.+.... . ...+.. +...|.+++|||||++||+++.|+
T Consensus 147 ~--~~la~~sg~~----~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~~l~s~s~d~-- 217 (355)
T 3vu4_A 147 N--GLLVYSNEFN----LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDG-- 217 (355)
T ss_dssp T--TEEEEEESSC----TTCEEEEECCC------------------CCEEECC-CSSCEEEEEECTTSSEEEEEETTC--
T ss_pred c--cEEEEeCCCc----CcEEEEEECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCCCEEEEEeCCC--
Confidence 8 7777752211 35799999764220 0 112333 467899999999999999999999
Q ss_pred ce-EEEEEecCCEEEEEEEEE-E-ecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEee
Q 000992 297 DS-VKICFFSNNHWYLKYEIR-Y-LRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTP 373 (1196)
Q Consensus 297 ~~-V~lW~~~n~~wylkq~l~-~-~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~ 373 (1196)
+ |+||++.+... .+++. . +......+.|+|++.. |..++.+|.+. .|++............+- +.|
T Consensus 218 -~~v~iwd~~~~~~--~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~d~~v~----iw~~~~~~~~~~~~~~~~---~~~ 286 (355)
T 3vu4_A 218 -TIIRVFKTEDGVL--VREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLH----VFEIFNDQDNKRHALKGW---INM 286 (355)
T ss_dssp -SEEEEEETTTCCE--EEEEECTTCCSCEEEEEECTTSCE-EEEEETTCEEE----EEESSCCSCCCSEETTTT---EEC
T ss_pred -CEEEEEECCCCcE--EEEEEcCCCCCcEEEEEECCCCCE-EEEEECCCEEE----EEEccCCCCcccccccce---eec
Confidence 9 99999987652 34444 1 3333488999999875 77777788775 454431100000000010 000
Q ss_pred ccccCCCCCceeeeec--CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 374 LSLSLMPPPMYLFSLK--FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 374 l~~~~vpppm~~~~l~--~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
...... ..++...+. ...+...++|+||| +.|++++.||++++|++..
T Consensus 287 ~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~d~--~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 287 KYFQSE-WSLCNFKLSVDKHVRGCKIAWISES--SLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCCCCS-SCSEEEECCCCTTCCCCEEEESSSS--EEEEEETTTTEEEEEEEEE
T ss_pred cccccc-cceeEEEeccCCCCCceEEEEeCCC--CEEEEEeCCCeEEEEEEEc
Confidence 000000 011112221 12234679999999 8999999999999999853
No 131
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.85 E-value=3.3e-19 Score=211.89 Aligned_cols=228 Identities=11% Similarity=0.097 Sum_probs=177.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++.+ +++.+++++.|+.|..||. .+++.. .+ +.+| .+.|.+++| +++.|++|+.||+|++
T Consensus 135 ~v~~~~~--d~~~l~~g~~dg~i~iwd~--~~~~~~---~~----~~~h----~~~v~~l~~--~~~~l~sg~~dg~i~v 197 (435)
T 1p22_A 135 GVYCLQY--DDQKIVSGLRDNTIKIWDK--NTLECK---RI----LTGH----TGSVLCLQY--DERVIITGSSDSTVRV 197 (435)
T ss_dssp CEEEEEC--CSSEEEEEESSSCEEEEES--SSCCEE---EE----ECCC----SSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred cEEEEEE--CCCEEEEEeCCCeEEEEeC--CCCeEE---EE----EcCC----CCcEEEEEE--CCCEEEEEcCCCeEEE
Confidence 3455554 7899999999999999998 444431 11 3333 358999988 8999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||..+++. .....|.+.|.+++|+| ..|++++.||+|.+|+.. ....... ..+.+|...+.++
T Consensus 198 wd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~-------------~~~~~~~~~v~~~ 262 (435)
T 1p22_A 198 WDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR-------------RVLVGHRAAVNVV 262 (435)
T ss_dssp EESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE-------------EEECCCSSCEEEE
T ss_pred EECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee-------------eEecCCCCcEEEE
Confidence 99988765 35556789999999985 499999999999998632 1111100 0122566788999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n- 258 (1196)
+| ||++|+ +++ .|++|+|||..+|++..+..+|.+.+.+++| +|++|++++.|+ .|++|+..
T Consensus 263 ~~--~~~~l~-s~~------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg------~i~iwd~~~ 325 (435)
T 1p22_A 263 DF--DDKYIV-SAS------GDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN------TIRLWDIEC 325 (435)
T ss_dssp EE--ETTEEE-EEE------TTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS------CEEEEETTT
T ss_pred Ee--CCCEEE-EEe------CCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC------eEEEEECCC
Confidence 99 889999 565 4699999999999999999999999999998 578999999864 69999954
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
|..... +.. +...|.+++| |++.|++++.|+ +|++|++.+
T Consensus 326 ~~~~~~--~~~-h~~~v~~~~~--~~~~l~sg~~dg---~i~vwd~~~ 365 (435)
T 1p22_A 326 GACLRV--LEG-HEELVRCIRF--DNKRIVSGAYDG---KIKVWDLVA 365 (435)
T ss_dssp CCEEEE--ECC-CSSCEEEEEC--CSSEEEEEETTS---CEEEEEHHH
T ss_pred CCEEEE--EeC-CcCcEEEEEe--cCCEEEEEeCCC---cEEEEECCC
Confidence 544332 333 4567999999 899999999999 999999864
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=2.1e-19 Score=237.66 Aligned_cols=377 Identities=10% Similarity=-0.010 Sum_probs=231.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+...+|+++ ..+|+.+.++.+..|..+...+.. .. +..+ ..+..++|||||+.|+++ .+|+|.+
T Consensus 205 ~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~--~~------l~~~-----~~~~~~~~SpDG~~la~~-~~~~i~~ 269 (1045)
T 1k32_A 205 HVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL--RK------HTSF-----TDYYPRHLNTDGRRILFS-KGGSIYI 269 (1045)
T ss_dssp CCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC--EE------CCCC-----CSSCEEEEEESSSCEEEE-ETTEEEE
T ss_pred cccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc--eE------ecCC-----CCcceeeEcCCCCEEEEE-eCCEEEE
Confidence 4566778766 334444556655566552012211 11 2222 235567999999999988 4899999
Q ss_pred EECCCCeEEEeee-----------ecCcEEEEEEC-CCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCcc
Q 000992 102 HSVDGNATEVVGR-----------VEGGVRFISPS-PDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPEL 169 (1196)
Q Consensus 102 w~~~~~~~e~vg~-----------~~~~I~~~awS-PDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf 169 (1196)
|+..++.+..+.. +.+.|.+++|| |||+.||+++ +++|.+|+....... .+.
T Consensus 270 ~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~--~~~------------- 333 (1045)
T 1k32_A 270 FNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL--KVP------------- 333 (1045)
T ss_dssp ECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE--ECS-------------
T ss_pred ecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE--Ecc-------------
Confidence 9997665543322 34479999999 9999999998 678888764321111 111
Q ss_pred ccCCC-CeEEEEEccCCceEEEeeccccccCCCCEEE-EEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCC
Q 000992 170 SSSFS-FKSPISWRGDGKYFATLSEFCNSSKLHKRLK-VWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSEN 247 (1196)
Q Consensus 170 ~~~~~-~v~~isWspDG~~lAsvss~d~~~~~d~~ir-VWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~ 247 (1196)
.+.. .+..++|+ ||+.|+ .++ .+..+. +|+..+|+..... ++...+..++|||||++||+++.+
T Consensus 334 -~~~~~~~~~~~~s-dg~~l~-~~s------~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~---- 399 (1045)
T 1k32_A 334 -EPLRIRYVRRGGD-TKVAFI-HGT------REGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDR---- 399 (1045)
T ss_dssp -CCSCEEEEEECSS-SEEEEE-EEE------TTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETT----
T ss_pred -CCCcceEEeeeEc-CCCeEE-EEE------CCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCC----
Confidence 2233 56899999 999999 454 246788 9999666655444 677788999999999999999874
Q ss_pred CCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-------CcceEEEEEecCCEEEEEEEEEEecC
Q 000992 248 KCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-------EYDSVKICFFSNNHWYLKYEIRYLRR 320 (1196)
Q Consensus 248 ~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~-------~~~~V~lW~~~n~~wylkq~l~~~~~ 320 (1196)
..|.+|+..+..... .+. .+...|.+++|||||+.||+++.+. ....|++|++.+... ..+..+..
T Consensus 400 --~~v~~~d~~tg~~~~-~~~-~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~---~~l~~~~~ 472 (1045)
T 1k32_A 400 --FEIMTVDLETGKPTV-IER-SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI---FAATTENS 472 (1045)
T ss_dssp --SEEEEEETTTCCEEE-EEE-CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE---EECSCSSS
T ss_pred --CeEEEEECCCCceEE-ecc-CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE---EEeeCCCc
Confidence 479999975322221 122 2345688999999999999987743 123799999987641 22222222
Q ss_pred CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCC------------------C
Q 000992 321 DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPP------------------P 382 (1196)
Q Consensus 321 ~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpp------------------p 382 (1196)
....+.|+|++.. |...+..+... .|.... ..+....+..+.+..+......+ .
T Consensus 473 ~~~~~~~spdG~~-l~~~s~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 544 (1045)
T 1k32_A 473 HDYAPAFDADSKN-LYYLSYRSLDP----SPDRVV---LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 544 (1045)
T ss_dssp BEEEEEECTTSCE-EEEEESCCCCC----EECSSS---SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTT
T ss_pred ccCCceEcCCCCE-EEEEecccCCc----Ccchhc---cccccccCceeEEEEeCCCCCCccccCcCccccccccccccC
Confidence 2367899999975 55555433322 232210 00001112222222221000000 0
Q ss_pred c--eeeeec-CCCCEEEEEEecCCCCCEEEE-------------EECCCcEEEEeCCCCCccccccCCceeeeeeccccc
Q 000992 383 M--YLFSLK-FPTAVTEMAFYSKSSKNCLAA-------------ILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETA 446 (1196)
Q Consensus 383 m--~~~~l~-~~~~V~~Vafspdg~~~~lAs-------------~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~ 446 (1196)
. ....+. +.+.+.+++|+||| ..+++ .....+|.+|++.+.... ..
T Consensus 545 ~~~~~~~l~~~~~~~~~~~~s~dg--~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~---------~l------- 606 (1045)
T 1k32_A 545 MYKRSSPINVDPGDYRMIIPLESS--ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT---------EV------- 606 (1045)
T ss_dssp GGGGCEECSCCCBCEEEEEECSSE--EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE---------EE-------
T ss_pred HhHceEEcCCCCCChhheEEcCCC--eEEEEecccCcccccccccCCCceEEEEECCCCcEE---------Ee-------
Confidence 0 011221 45678999999999 66775 122456777777643211 00
Q ss_pred CCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 447 FGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 447 ~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
...+..++|+|||+.|+++..+ .+.+|.+.
T Consensus 607 ~~~v~~~~~S~DG~~l~~~~~~---~i~~~d~~ 636 (1045)
T 1k32_A 607 KNNLTDLRLSADRKTVMVRKDD---GKIYTFPL 636 (1045)
T ss_dssp EEEEEEEEECTTSCEEEEEETT---SCEEEEES
T ss_pred ecCcceEEECCCCCEEEEEcCC---cEEEEeCc
Confidence 0357889999999999988764 67788763
No 133
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=2.9e-19 Score=225.58 Aligned_cols=350 Identities=9% Similarity=0.035 Sum_probs=206.1
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEeccccccccc-ceeeccccccc----cc---cCCCCCCEEEEEEccCCCEEEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA-SIKTAISAEIE----HI---DLEPGDSITAFDYLMEKEALIVGT 94 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~-~~~~~~~~~l~----~~---~~~~~~~v~~v~~spd~~~La~as 94 (1196)
+..+.|. ++.+++.+.++ | .||. .+++.. ..+.. +..+. .. .......|.+++|||| +.++.+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~--~tg~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~- 98 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNK--ANGKSAQTTRFS-AADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF- 98 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC---------CEEEE-HHHHHTTC-----------CCCEEEEETTT-TEEEEE-
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEEC--CCCcEeeEEeec-hhHhhhhccchhccccccccCceeEEECCC-CeEEEE-
Confidence 3445676 77777777777 8 9998 454430 01110 00010 00 0000136999999999 666665
Q ss_pred CCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC-----ceeeeeecccccCccccc--cC
Q 000992 95 SSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW-----DLLYENPLEELAEGFDVH--EP 167 (1196)
Q Consensus 95 ~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~-----d~~~~~~l~~~~~~~~Vs--~t 167 (1196)
.+|+|.+||..+++...+..+.+.+.+++|||||+.||++ .+++|.+|+... ... ..+.... ...+. ..
T Consensus 99 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~--~~~~~~~-~~~~~~g~~ 174 (706)
T 2z3z_A 99 TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA--IAVTIDG-TETLVYGQA 174 (706)
T ss_dssp ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC--EESCSCC-BTTEEESSC
T ss_pred ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc--EEeccCC-CCCeEcccc
Confidence 4699999999998776444456779999999999999996 578999987432 111 1111110 00000 00
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccc---------------------------cCCCCEEEEEECCCCcEEEEec-
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNS---------------------------SKLHKRLKVWERDSGTLQASSE- 219 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~---------------------------~~~d~~irVWd~~~G~l~~~~e- 219 (1196)
..+.+...+..++|||||++|| +++.+.. ...+.+|++||..+|+......
T Consensus 175 ~~~ee~~~~~~~~~SpDg~~la-~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 175 VHQREFGIEKGTFWSPKGSCLA-FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CGGGCTTCCCSEEECTTSSEEE-EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred hhhhhcCCCceEEECCCCCEEE-EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 0001112357899999999999 4542210 0134689999998887665543
Q ss_pred -cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe-eEEEEEeccCCCC---cEEEEEEcc--CCCeeEEEEc
Q 000992 220 -LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDS---TVELLKWNC--MSDLLAAVVR 292 (1196)
Q Consensus 220 -~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl-~~~~f~l~~~~~~---~V~~laWSp--Dg~~LAs~~~ 292 (1196)
++...+.+++|||||+.|++++.+.. .....|.+|+..+. ..... ....... .+..++||| ||++|+++..
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRTL-FVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEEE-EEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeEE-EEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 35567899999999999998876531 12347889996543 22221 1111111 246789999 9999999888
Q ss_pred cCCcceEEEEEec-CCEEEEEEEEEEecCCcEE-EEEccCCCceEEEEec-CC--cEEEEEEEEeeecCCCeeEEEEcCC
Q 000992 293 FEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIR-FMWHPTKPLQLICWTL-DG--QITTYNFIWTTAVMENSTALVIDGS 367 (1196)
Q Consensus 293 d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~~~-v~Wsp~~~~~L~~~~~-~g--~~~~~~~~~~~~~~d~~~v~viDg~ 367 (1196)
++ .++||... +.. ....+..+...... +.|+|++.. |.+... ++ ...
T Consensus 332 ~g---~~~l~~~~~~~~--~~~~l~~~~~~v~~~~~~spdg~~-l~~~~~~~~~~~~~---------------------- 383 (706)
T 2z3z_A 332 DG---WNHLYLYDTTGR--LIRQVTKGEWEVTNFAGFDPKGTR-LYFESTEASPLERH---------------------- 383 (706)
T ss_dssp TS---SCEEEEEETTSC--EEEECCCSSSCEEEEEEECTTSSE-EEEEESSSCTTCBE----------------------
T ss_pred CC---ccEEEEEECCCC--EEEecCCCCeEEEeeeEEcCCCCE-EEEEecCCCCceEE----------------------
Confidence 87 78999876 322 11222221112233 799999875 333332 22 111
Q ss_pred EEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECC----CcEEEEeCCCC
Q 000992 368 KILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSD----GCLCVVDLPAP 425 (1196)
Q Consensus 368 ~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~d----g~v~lw~~~~~ 425 (1196)
|..+++.... ...+.+...+.+++||||| +.++....+ +.|.+|+..+.
T Consensus 384 -l~~~d~~~~~------~~~l~~~~~~~~~~~spdg--~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 384 -FYCIDIKGGK------TKDLTPESGMHRTQLSPDG--SAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp -EEEEETTCCC------CEESCCSSSEEEEEECTTS--SEEEEEEECSSCSCEEEEEESSSC
T ss_pred -EEEEEcCCCC------ceeccCCCceEEEEECCCC--CEEEEEecCCCCCcEEEEEECCCC
Confidence 1111111110 0123345678999999999 788776544 46999998753
No 134
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.84 E-value=3.6e-19 Score=203.00 Aligned_cols=202 Identities=13% Similarity=0.035 Sum_probs=132.6
Q ss_pred CCEEEEEEccC----CCEEEEEEC--------------------CCcEEEEECCC-CeE-EEeeeecCcEEEEEECC---
Q 000992 76 DSITAFDYLME----KEALIVGTS--------------------SGLLLLHSVDG-NAT-EVVGRVEGGVRFISPSP--- 126 (1196)
Q Consensus 76 ~~v~~v~~spd----~~~La~as~--------------------dG~I~lw~~~~-~~~-e~vg~~~~~I~~~awSP--- 126 (1196)
..|.+++|+|| ++.+++++. |++|++|+... ++. .....|...+..++|||
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g 191 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG 191 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence 37999999999 999988764 66666666522 322 22223455666666666
Q ss_pred CCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc------ccC
Q 000992 127 DGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN------SSK 199 (1196)
Q Consensus 127 Dg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~------~~~ 199 (1196)
||++||+++.|++|++|+ +.+..+.....+. . +...+.+++|+|||++++ +.+.+. ...
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~----~---------~v~~v~~vafSpdG~~lv-s~s~~~~~w~laSGs 257 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD----S---------YQASVCHKAYSEMGLLFI-VLSHPCAKESESLRS 257 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC----------------CCCEEEEEEETTEEEE-EEC------------
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCC----c---------ceeeeEEEEECCCCCEEE-EeccCCCcceeeccC
Confidence 667799999999999987 3344444332111 1 113567889999999987 333210 013
Q ss_pred CCCEEEEEECCCCcEEEEe-----ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCC
Q 000992 200 LHKRLKVWERDSGTLQASS-----ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDS 273 (1196)
Q Consensus 200 ~d~~irVWd~~~G~l~~~~-----e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~ 273 (1196)
.|++||+||..+|++..+. .+|.+.. ++.+.+|.++|+++.|+ +|++||.. |.... +|..+...
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~--lsg~~sg~~lASgS~Dg------TIkIWDl~tGk~l~--tL~gH~~~ 327 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQAGRF--LEGDVKDHCAAAILTSG------TIAIWDLLLGQCTA--LLPPVSDQ 327 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCCCCE--EEEEEETTEEEEEETTS------CEEEEETTTCSEEE--EECCC--C
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCccee--EccccCCCEEEEEcCCC------cEEEEECCCCcEEE--EecCCCCC
Confidence 6899999999999887765 2444433 34444588999999874 69999964 44333 34433322
Q ss_pred cEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 274 TVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 274 ~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
.+..++|||||++||+++.|+ +|+||+.
T Consensus 328 vvs~vafSPDG~~LaSGS~D~---TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDG---NIFVYHY 355 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTS---CEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCC---cEEEecC
Confidence 344699999999999999999 9999985
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.84 E-value=5.4e-20 Score=232.52 Aligned_cols=294 Identities=9% Similarity=0.046 Sum_probs=176.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC-----
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS----- 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d----- 96 (1196)
....++|.+|+..+++ +.++.|+.||. .+++.. .+ +..+.. ....|.+++|||||+.|++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~--~~g~~~-~~------~~~~~~-~~~~v~~~~~SpDg~~l~~~~~~~~~~~ 86 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNV--ETNTST-VL------IEGKKI-ESLRAIRYEISPDREYALFSYNVEPIYQ 86 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCG--GGCCCE-EE------ECTTTT-TTTTCSEEEECTTSSEEEEEESCCCCSS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEEC--CCCcEE-EE------eccccc-cccccceEEECCCCCEEEEEecCcccee
Confidence 4566789999997765 67888999999 555432 11 121111 01248999999999999999875
Q ss_pred ----CcEEEEECCCCeEEEee---eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCcc
Q 000992 97 ----GLLLLHSVDGNATEVVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPEL 169 (1196)
Q Consensus 97 ----G~I~lw~~~~~~~e~vg---~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf 169 (1196)
++|.+||.++++...+. .+...+.+++|||||+.||+++. ++|.+|+....... .+.... ...+ .+
T Consensus 87 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~--~~~~~~-~~~~---~~ 159 (723)
T 1xfd_A 87 HSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAI--RVVSTG-KEGV---IY 159 (723)
T ss_dssp SCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCE--EEECCC-BTTT---EE
T ss_pred ecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceE--EEecCC-CCCc---eE
Confidence 78889999987654333 23344889999999999999987 68988864321111 111110 0000 00
Q ss_pred ccC---------CCCeEEEEEccCCceEEEeeccccc----------------------------cCCCCEEEEEECCCC
Q 000992 170 SSS---------FSFKSPISWRGDGKYFATLSEFCNS----------------------------SKLHKRLKVWERDSG 212 (1196)
Q Consensus 170 ~~~---------~~~v~~isWspDG~~lAsvss~d~~----------------------------~~~d~~irVWd~~~G 212 (1196)
.++ .+.+..++|||||++|| .++.+.. ...+.+|++||..+|
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLA-YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEE-EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred CcccceeEEEEeccCcceEEECCCCCEEE-EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 000 12347899999999999 4543310 001238999999788
Q ss_pred cEEEEeccC------CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEE----EEEEcc
Q 000992 213 TLQASSELK------AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVE----LLKWNC 282 (1196)
Q Consensus 213 ~l~~~~e~~------~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~----~laWSp 282 (1196)
+.......+ .+.+.+++|||||++|++.+... .....|.+|+.++..... .+..++...+. .++|||
T Consensus 239 ~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~~~~~sp 315 (723)
T 1xfd_A 239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA--QNVSILTLCDATTGVCTK-KHEDESEAWLHRQNEEPVFSK 315 (723)
T ss_dssp CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT--SCEEEEEEEETTTCCEEE-EEEEECSSCCCCCCCCCEECT
T ss_pred ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC--CCeEEEEEEeCCCCcceE-EEEeccCCEEeccCCCceEcC
Confidence 754444433 56788999999999998775432 123578899965432221 11112223333 789999
Q ss_pred CCCeeEEE-EccCC----cceEEEEE-ecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEE
Q 000992 283 MSDLLAAV-VRFEE----YDSVKICF-FSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICW 338 (1196)
Q Consensus 283 Dg~~LAs~-~~d~~----~~~V~lW~-~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~ 338 (1196)
||+.|+.. +.... ...|.+|+ ..+..-.....+....... ..+.|+|++.. |...
T Consensus 316 dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~-l~~~ 377 (723)
T 1xfd_A 316 DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNK-IYFL 377 (723)
T ss_dssp TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTE-EEEE
T ss_pred CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCE-EEEE
Confidence 99999986 33221 11466666 2322100001111111112 23689999875 4433
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.84 E-value=2.4e-18 Score=211.49 Aligned_cols=326 Identities=11% Similarity=0.016 Sum_probs=210.4
Q ss_pred EEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec---cCceeeeeeccc
Q 000992 82 DYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH---DWDLLYENPLEE 157 (1196)
Q Consensus 82 ~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~---~~d~~~~~~l~~ 157 (1196)
+|+|++..+++++.+|+|.+||..++++. .+.. ...+.+++|||||++|++++.|++|.+|+. ....+.++..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-- 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-- 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC-STTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC--
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec-CcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec--
Confidence 37999999999999999999999987653 3331 123899999999999999999999999875 2333332221
Q ss_pred ccCccccccCccccCCCCeEEEEEcc----CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-----------C
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRG----DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-----------A 222 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWsp----DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-----------~ 222 (1196)
......++|+| ||++++ +++. .+++|+|||..+++++.+.... .
T Consensus 221 ---------------g~~p~~va~sp~~~~dg~~l~-v~~~-----~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~ 279 (543)
T 1nir_A 221 ---------------GIEARSVESSKFKGYEDRYTI-AGAY-----WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 279 (543)
T ss_dssp ---------------CSEEEEEEECCSTTCTTTEEE-EEEE-----ESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred ---------------CCCcceEEeCCCcCCCCCEEE-EEEc-----cCCeEEEEeccccccceeecccCcccCccccccC
Confidence 12458999999 999998 6652 3589999999999998876531 2
Q ss_pred CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEc-cCCcceEE
Q 000992 223 FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVK 300 (1196)
Q Consensus 223 ~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~ 300 (1196)
..+.++.++|+|..+..+... ...|.+|+..... .....+. ....+..++|+|||++|.+++. ++ +|.
T Consensus 280 ~~v~~i~~s~~~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~~~~---~v~ 349 (543)
T 1nir_A 280 PRVAAIIASHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAANNSN---KVA 349 (543)
T ss_dssp CCEEEEEECSSSSEEEEEETT-----TTEEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEGGGT---EEE
T ss_pred CceEEEEECCCCCEEEEEECC-----CCeEEEEEecCCCcceeEEec--cCcCccCceECCCCCEEEEEecCCC---eEE
Confidence 257899999988765544433 3579999854311 1111222 2345778999999998776654 55 899
Q ss_pred EEEecCCEEEEEEEEEEe----cCCcEEEEEccCCCceEEEEe-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeecc
Q 000992 301 ICFFSNNHWYLKYEIRYL----RRDGIRFMWHPTKPLQLICWT-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLS 375 (1196)
Q Consensus 301 lW~~~n~~wylkq~l~~~----~~~~~~v~Wsp~~~~~L~~~~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~ 375 (1196)
+||..+.. +.+.+... +.....+ ++|++...+.... .++ +|.+|+..
T Consensus 350 v~D~~tg~--l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~-------------------------~V~v~d~~ 401 (543)
T 1nir_A 350 VIDSKDRR--LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDG-------------------------SISLIGTD 401 (543)
T ss_dssp EEETTTTE--EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSS-------------------------EEEEEECC
T ss_pred EEECCCCe--EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCc-------------------------eEEEEEeC
Confidence 99999875 33444421 1111222 4666443222211 122 33333322
Q ss_pred ccCCCC--Cceeeeec-CCCCEEEEEEecCCCCCEEEEEE-------CCCcEEEEeCCCCCccccccCCceeeeee--c-
Q 000992 376 LSLMPP--PMYLFSLK-FPTAVTEMAFYSKSSKNCLAAIL-------SDGCLCVVDLPAPDMLEDLEGTEFVVEAC--I- 442 (1196)
Q Consensus 376 ~~~vpp--pm~~~~l~-~~~~V~~Vafspdg~~~~lAs~~-------~dg~v~lw~~~~~~~~~~~~g~~~~~~~~--~- 442 (1196)
...-|. -.+.+++. +...+..|+||||| +.|++.+ .+++|.+|+..+..+. ++..+. .
T Consensus 402 ~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg--~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~-------~~~~~v~~~~ 472 (543)
T 1nir_A 402 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKS--SHLYVDTTFNPDARISQSVAVFDLKNLDAK-------YQVLPIAEWA 472 (543)
T ss_dssp TTTCTTTBTSEEEEEECSCSCCCCEECCTTC--CEEEECCTTCSSHHHHTCEEEEETTCTTSC-------CEEECHHHHH
T ss_pred CCCCchhcCeEEEEEEcCCCCceEEEcCCCC--CcEEEecCCCCCcccCceEEEEECCCCCCC-------eEEeechhhc
Confidence 100000 11234454 45667889999999 8999987 2779999999875433 111100 0
Q ss_pred -ccccCCcEEEEEEecCCeEEEEEec---CCCCceEEEEe
Q 000992 443 -SETAFGSVIHLIWLGSHLLLSVSHH---GPRHSNYFRGA 478 (1196)
Q Consensus 443 -~~~~~~~v~~l~~~~d~~lla~~~~---~~~~~~~~~~~ 478 (1196)
...+...++++.|+|+|+.|.++.. +..+.+.+|+.
T Consensus 473 ~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 473 DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred ccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 0122358999999999998887643 22366777654
No 137
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=3.4e-19 Score=225.49 Aligned_cols=322 Identities=9% Similarity=0.023 Sum_probs=193.8
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecC---cEEEEEECCCCCEEEEEeC---------CceEEEEec
Q 000992 79 TAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEG---GVRFISPSPDGDLLGVTTG---------FGQILVMTH 145 (1196)
Q Consensus 79 ~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~---~I~~~awSPDg~~LA~~s~---------d~tV~l~~~ 145 (1196)
.+++|+|||+.++ .+.||+|++||..+++.. +..++.. +|.+++|||||++||+++. +++|.+|+.
T Consensus 19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 3789999996554 457999999999998765 4443332 4899999999999999986 688988864
Q ss_pred cCcee-eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCC
Q 000992 146 DWDLL-YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAF 223 (1196)
Q Consensus 146 ~~d~~-~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~ 223 (1196)
..... ....+ ...+..++|||||++|| .++ ++.|++|+..+|+..... .++..
T Consensus 98 ~~g~~~~~~~l-----------------~~~~~~~~~SPDG~~la-~~~-------~~~i~~~~~~~g~~~~l~~~~~~~ 152 (719)
T 1z68_A 98 SNGEFVRGNEL-----------------PRPIQYLCWSPVGSKLA-YVY-------QNNIYLKQRPGDPPFQITFNGREN 152 (719)
T ss_dssp TTTEECCSSCC-----------------CSSBCCEEECSSTTCEE-EEE-------TTEEEEESSTTSCCEECCCCCBTT
T ss_pred CCCccccceec-----------------CcccccceECCCCCEEE-EEE-------CCeEEEEeCCCCCcEEEecCCCcC
Confidence 32111 00111 12457899999999999 443 479999999888776543 22222
Q ss_pred c-----------------eeEEEEcCCCCeEEEEecCCCC----------------------------CCCCeEEEEeCC
Q 000992 224 M-----------------GAVLEWMPSGANIAAVYDRKSE----------------------------NKCPSIVFYERN 258 (1196)
Q Consensus 224 ~-----------------v~slawsPdG~~IAs~s~d~~~----------------------------~~~~~V~~~e~n 258 (1196)
. ..+++|||||+.||+++.+.+. ....+|.+|+.+
T Consensus 153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~ 232 (719)
T 1z68_A 153 KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT 232 (719)
T ss_dssp TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence 1 1489999999999999865321 012267888876
Q ss_pred CeeEE-EEEecc-----CCCCcEEEEEEccCCCeeEEEEccCC-cceEEEEE----ecCCEEEEEEEE----EEecCCcE
Q 000992 259 GLERS-SFDINE-----QIDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICF----FSNNHWYLKYEI----RYLRRDGI 323 (1196)
Q Consensus 259 Gl~~~-~f~l~~-----~~~~~V~~laWSpDg~~LAs~~~d~~-~~~V~lW~----~~n~~wylkq~l----~~~~~~~~ 323 (1196)
+.... .+.+.. .+...+.+++|||||++++++..... ...|.+|+ ..+..+ ...+ ..+.....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~--~~~~~~~~~~~~~~~~ 310 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC--PKTQEHIEESRTGWAG 310 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC--CGGGEEEEECSSSCSS
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce--EEEEecccccCCceEc
Confidence 53310 012211 13456899999999988887654321 12588888 655432 1111 11111112
Q ss_pred -----EEEEccCCCceEEEE-e-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec-CCCCEE
Q 000992 324 -----RFMWHPTKPLQLICW-T-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPTAVT 395 (1196)
Q Consensus 324 -----~v~Wsp~~~~~L~~~-~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~-~~~~V~ 395 (1196)
.+.|+|++.. +.++ . .+|.. +|.++++.... ...+. +...|.
T Consensus 311 ~~~~~~~~~spdg~~-l~~~~~~~~g~~-----------------------~l~~~~~~~~~------~~~lt~~~~~v~ 360 (719)
T 1z68_A 311 GFFVSTPVFSYDAIS-YYKIFSDKDGYK-----------------------HIHYIKDTVEN------AIQITSGKWEAI 360 (719)
T ss_dssp SSSCCCCEECTTSSC-EEEEEECTTSCE-----------------------EEEEESSCSTT------CEECSCSSSCEE
T ss_pred cccCCccEECCCCCe-EEEEEEccCCce-----------------------EEEEEECCCCc------eEecccCceEEE
Confidence 5789999875 3332 2 23322 12222222111 01121 234577
Q ss_pred EEEEecCCCCCEEEEEECC-----CcEEEEeCCCCCccccccCC-ceeeeeecccccCCcEEEEEEecCCeEEEEEec
Q 000992 396 EMAFYSKSSKNCLAAILSD-----GCLCVVDLPAPDMLEDLEGT-EFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 396 ~Vafspdg~~~~lAs~~~d-----g~v~lw~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1196)
.+.|+ ++ +.|+..+.+ ++++||.++... |. ......+....+...+..+.|+||++.++....
T Consensus 361 ~~~~~-d~--~~i~~~~~~~~~~~~~~~l~~~~~~~------g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s 429 (719)
T 1z68_A 361 NIFRV-TQ--DSLFYSSNEFEEYPGRRNIYRISIGS------YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCY 429 (719)
T ss_dssp EEEEE-CS--SEEEEEESCGGGCTTCBEEEEEECSS------SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEEC
T ss_pred EEEEE-eC--CEEEEEEecCCCCCceEEEEEEeCCC------CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcC
Confidence 88888 77 677666665 889999876310 10 001000000012235778899999987776544
No 138
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.82 E-value=6.2e-18 Score=192.80 Aligned_cols=293 Identities=15% Similarity=0.096 Sum_probs=187.4
Q ss_pred EEEEEE-ccCCCEEE--EEECCCcEEEEECCCC---e-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCcee
Q 000992 78 ITAFDY-LMEKEALI--VGTSSGLLLLHSVDGN---A-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 78 v~~v~~-spd~~~La--~as~dG~I~lw~~~~~---~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
+.++-| .+..+-+| +|+ ..+|+||++..+ + +.....|+..|..++|+||..-|+.+.- |++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~---------- 109 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-GNL---------- 109 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-CSS----------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-ccc----------
Confidence 555666 44455554 444 457999999875 2 2345556789999999999766554431 111
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccC----CceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCce
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGD----GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMG 225 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD----G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v 225 (1196)
+ ...+.+++++|| |++++ +++ ..++||+..+|+++.++ .+|++.|
T Consensus 110 ---------~------------~~~v~sla~spd~~~~~~~l~-s~g--------~~~~v~~l~~g~lv~ss~~g~d~~V 159 (356)
T 2w18_A 110 ---------E------------IREIRALFCSSDDESEKQVLL-KSG--------NIKAVLGLTKRRLVSSSGTLSDQQV 159 (356)
T ss_dssp ---------S------------EEEEEEECC------CCEEEE-EEE--------EEEEEEEETTTEEEEEESSSTTCEE
T ss_pred ---------c------------ccceEEEEECCCccccccEEE-eCC--------CeEEEEecCCCcEEEecccCCCCcE
Confidence 0 023589999999 99999 554 46899999899999884 7899999
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc---CCCeeEEEEccCCcceEEEE
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC---MSDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp---Dg~~LAs~~~d~~~~~V~lW 302 (1196)
..++++|+|+.+++... +...+..++||| |++.||+++.|+ +|+||
T Consensus 160 ~~~~~s~dG~~~~s~~~----------------------------~~~~v~~l~fs~~~g~~~~LaSgS~D~---TIkIW 208 (356)
T 2w18_A 160 EVMTFAEDGGGKENQFL----------------------------MPPEETILTFAEVQGMQEALLGTTIMN---NIVIW 208 (356)
T ss_dssp EEEEECTTSCEEEEEEE----------------------------CCCSSCEEEEEEEETSTTEEEEEETTS---EEEEE
T ss_pred EEEEECCCCceeeeecc----------------------------CCCceeeEEeeccCCCCceEEEecCCC---cEEEE
Confidence 99999999998875321 123467889999 889999999999 99999
Q ss_pred EecCCEEEEEEEEEEecC---CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC
Q 000992 303 FFSNNHWYLKYEIRYLRR---DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 379 (1196)
Q Consensus 303 ~~~n~~wylkq~l~~~~~---~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v 379 (1196)
|+.+.+. .+.+..+.. ....++|+|++.. +...+.+.. .|.+. ......++++|+...+..
T Consensus 209 Dl~TGk~--l~tL~g~~~~v~~v~~vafSpdG~~-lvs~s~~~~------~w~la-------SGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 209 NLKTGQL--LKKMHIDDSYQASVCHKAYSEMGLL-FIVLSHPCA------KESES-------LRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp ETTTCCE--EEEEECCC---CCCEEEEEEETTEE-EEEEC-------------------------CCEEEEEEETTTTEE
T ss_pred ECCCCcE--EEEEcCCCcceeeeEEEEECCCCCE-EEEeccCCC------cceee-------ccCCCcEEEEEECCCCEE
Confidence 9998752 344543221 2256789998754 333332111 12221 222344556665443211
Q ss_pred CCCceeeee--cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCc-EEEEEEe
Q 000992 380 PPPMYLFSL--KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGS-VIHLIWL 456 (1196)
Q Consensus 380 pppm~~~~l--~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-v~~l~~~ 456 (1196)
...+. ..+ .|...+.+..++ + ..+|+++.|++|+|||+.+..+..++.|+ .+. +..++|+
T Consensus 273 l~v~~-~~~p~Gh~~~~lsg~~s--g--~~lASgS~DgTIkIWDl~tGk~l~tL~gH------------~~~vvs~vafS 335 (356)
T 2w18_A 273 VGVML-YCLPPGQAGRFLEGDVK--D--HCAAAILTSGTIAIWDLLLGQCTALLPPV------------SDQHWSFVKWS 335 (356)
T ss_dssp EEEEE-ECCCTTCCCCEEEEEEE--T--TEEEEEETTSCEEEEETTTCSEEEEECCC--------------CCCCEEEEC
T ss_pred EEEEE-eeccCCCcceeEccccC--C--CEEEEEcCCCcEEEEECCCCcEEEEecCC------------CCCeEEEEEEC
Confidence 00000 000 233344444444 5 78999999999999999987777666654 233 3458999
Q ss_pred cCCeEEEEEecCCCCceEEEEe
Q 000992 457 GSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 457 ~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
|||++|++++.+ .++.+|++
T Consensus 336 PDG~~LaSGS~D--~TIklWd~ 355 (356)
T 2w18_A 336 GTDSHLLAGQKD--GNIFVYHY 355 (356)
T ss_dssp SSSSEEEEECTT--SCEEEEEE
T ss_pred CCCCEEEEEECC--CcEEEecC
Confidence 999999999876 68888875
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=6.1e-18 Score=213.46 Aligned_cols=325 Identities=11% Similarity=0.026 Sum_probs=195.8
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeE--EEeeeec-----------------CcEEEEEECCCCCEEEEEeCC
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--EVVGRVE-----------------GGVRFISPSPDGDLLGVTTGF 137 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~--e~vg~~~-----------------~~I~~~awSPDg~~LA~~s~d 137 (1196)
.+..+.|+ |+.++.++.+| | +||..+++. ..+-.+. .+|.+++|||| +.|++++ +
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 35567888 77788888888 8 999998766 5333322 46999999999 6666664 4
Q ss_pred ceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-----C
Q 000992 138 GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-----G 212 (1196)
Q Consensus 138 ~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-----G 212 (1196)
++|.+|+..-..... +. .+...+..++|||||++|| .+. ++.|++|+..+ |
T Consensus 101 ~~i~~~d~~~~~~~~--l~--------------~~~~~~~~~~~SpdG~~la-~~~-------~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 101 GGLVGFDMLARKVTY--LF--------------DTNEETASLDFSPVGDRVA-YVR-------NHNLYIARGGKLGEGMS 156 (706)
T ss_dssp TEEEEEETTTTEEEE--EE--------------CCTTCCTTCEECTTSSEEE-EEE-------TTEEEEEECBCTTSCCC
T ss_pred CEEEEEECCCCceEE--cc--------------CCcccccCCcCCCCCCEEE-EEE-------CCeEEEEecCcccccCC
Confidence 899998743221111 11 1123457899999999999 443 48999999977 8
Q ss_pred cEEEEeccCCCc--------------eeEEEEcCCCCeEEEEecCCC---------------------------CCCCCe
Q 000992 213 TLQASSELKAFM--------------GAVLEWMPSGANIAAVYDRKS---------------------------ENKCPS 251 (1196)
Q Consensus 213 ~l~~~~e~~~~~--------------v~slawsPdG~~IAs~s~d~~---------------------------~~~~~~ 251 (1196)
+........... +.+++|||||++||+++.+.+ ......
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 776654433332 479999999999999984321 012356
Q ss_pred EEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCc--ceEEEEEecCC-EEEEEEEEEEecCC----cEE
Q 000992 252 IVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY--DSVKICFFSNN-HWYLKYEIRYLRRD----GIR 324 (1196)
Q Consensus 252 V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~--~~V~lW~~~n~-~wylkq~l~~~~~~----~~~ 324 (1196)
|.+|+..+...........+...+..++|||||+.|++++.++.. ..|.+|+..+. .+. ......... ...
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~--~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR--TLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE--EEEEEECSSCCCCCSC
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee--EEEEccCCCeECccCC
Confidence 888987653322111111234568999999999999998876422 27999999876 431 111111111 134
Q ss_pred EEEcc--CCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEE-EEEec
Q 000992 325 FMWHP--TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTE-MAFYS 401 (1196)
Q Consensus 325 v~Wsp--~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~-Vafsp 401 (1196)
+.|+| ++. .+.+...+|.... |.++. +|+.+. .+. .+...|.+ ++|||
T Consensus 315 ~~~sp~~dg~-~l~~~~~~g~~~l----~~~~~---------~~~~~~--~l~-------------~~~~~v~~~~~~sp 365 (706)
T 2z3z_A 315 LTFLPGSNNQ-FIWQSRRDGWNHL----YLYDT---------TGRLIR--QVT-------------KGEWEVTNFAGFDP 365 (706)
T ss_dssp CEECTTCSSE-EEEEECTTSSCEE----EEEET---------TSCEEE--ECC-------------CSSSCEEEEEEECT
T ss_pred ceeecCCCCE-EEEEEccCCccEE----EEEEC---------CCCEEE--ecC-------------CCCeEEEeeeEEcC
Confidence 78999 775 3444444554332 22211 232221 110 13445666 89999
Q ss_pred CCCCCEEEEEECCC-----cEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCC--CceE
Q 000992 402 KSSKNCLAAILSDG-----CLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPR--HSNY 474 (1196)
Q Consensus 402 dg~~~~lAs~~~dg-----~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~--~~~~ 474 (1196)
|| +.|+..+.+. .|..|+..+.. ...+ .+...+..++|+|||+.++....+.. ..+.
T Consensus 366 dg--~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-------------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~ 429 (706)
T 2z3z_A 366 KG--TRLYFESTEASPLERHFYCIDIKGGK-TKDL-------------TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVT 429 (706)
T ss_dssp TS--SEEEEEESSSCTTCBEEEEEETTCCC-CEES-------------CCSSSEEEEEECTTSSEEEEEEECSSCSCEEE
T ss_pred CC--CEEEEEecCCCCceEEEEEEEcCCCC-ceec-------------cCCCceEEEEECCCCCEEEEEecCCCCCcEEE
Confidence 99 7776665553 45555554321 1011 12246888999999998877644332 4466
Q ss_pred EEEe
Q 000992 475 FRGA 478 (1196)
Q Consensus 475 ~~~~ 478 (1196)
+|+.
T Consensus 430 l~d~ 433 (706)
T 2z3z_A 430 VTNI 433 (706)
T ss_dssp EEES
T ss_pred EEEC
Confidence 6654
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.82 E-value=2.3e-18 Score=189.75 Aligned_cols=254 Identities=14% Similarity=0.078 Sum_probs=167.6
Q ss_pred CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC-CeEEE-e-eeec
Q 000992 40 SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG-NATEV-V-GRVE 116 (1196)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~-~~~e~-v-g~~~ 116 (1196)
.++.|+.||+ .+++.. . +..+ .+.|.+++|+|||+.|++++ +|.|.+||..+ ++... . ++..
T Consensus 20 ~~~~i~~~d~--~~~~~~-~-------~~~~----~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~ 84 (297)
T 2ojh_A 20 MRSSIEIFNI--RTRKMR-V-------VWQT----PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT 84 (297)
T ss_dssp CCEEEEEEET--TTTEEE-E-------EEEE----SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC
T ss_pred cceeEEEEeC--CCCcee-e-------eccC----CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc
Confidence 4668999998 444431 1 2222 35799999999999999986 88999999998 76542 2 3324
Q ss_pred CcEEEEEECCCCCEEEEEe--CCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecc
Q 000992 117 GGVRFISPSPDGDLLGVTT--GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1196)
Q Consensus 117 ~~I~~~awSPDg~~LA~~s--~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~ 194 (1196)
..|.+++|||||+.|++++ .++.+.+|..+.+.-....+. ....+..++|+|||++|+.+++
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~spdg~~l~~~~~- 148 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT---------------KNLPSYWHGWSPDGKSFTYCGI- 148 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC---------------SSSSEEEEEECTTSSEEEEEEE-
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee---------------cCCCccceEECCCCCEEEEEEC-
Confidence 6789999999999999999 445666664322111111111 1123688999999999883232
Q ss_pred ccccCCCCEEEEEE--CCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe--CCCeeEEEEEeccC
Q 000992 195 CNSSKLHKRLKVWE--RDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE--RNGLERSSFDINEQ 270 (1196)
Q Consensus 195 d~~~~~d~~irVWd--~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e--~nGl~~~~f~l~~~ 270 (1196)
.++.++||+ ..+++. .....+.+.+.+++|+|+|+.|+.++... ..+.+|. ..+.... .+..
T Consensus 149 -----~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~~i~~~~~~~~~~~--~~~~- 214 (297)
T 2ojh_A 149 -----RDQVFDIYSMDIDSGVE-TRLTHGEGRNDGPDYSPDGRWIYFNSSRT-----GQMQIWRVRVDGSSVE--RITD- 214 (297)
T ss_dssp -----ETTEEEEEEEETTTCCE-EECCCSSSCEEEEEECTTSSEEEEEECTT-----SSCEEEEEETTSSCEE--ECCC-
T ss_pred -----CCCceEEEEEECCCCcc-eEcccCCCccccceECCCCCEEEEEecCC-----CCccEEEECCCCCCcE--EEec-
Confidence 357888988 434554 44455677889999999999988776421 2355554 3443322 2222
Q ss_pred CCCcEEEEEEccCCCeeEEEEccCC--------cceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 271 IDSTVELLKWNCMSDLLAAVVRFEE--------YDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 271 ~~~~V~~laWSpDg~~LAs~~~d~~--------~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
+...+..++|||||+.||+++.++. ...|.+|+..+........+..+......+.|+|++.. |.+.+
T Consensus 215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~ 290 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE-FAYVR 290 (297)
T ss_dssp CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE-EEEEE
T ss_pred CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE-EEEEE
Confidence 2356889999999999999987631 13699999987654322223232223367899999875 44443
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.80 E-value=2.2e-17 Score=186.99 Aligned_cols=273 Identities=14% Similarity=0.104 Sum_probs=173.2
Q ss_pred CEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC-CcEEEEECC--CCe
Q 000992 33 NRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS-GLLLLHSVD--GNA 108 (1196)
Q Consensus 33 ~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d-G~I~lw~~~--~~~ 108 (1196)
..+|++ +.++.|..|+++ ..+..+ .+.. .+ ....+.+++|+|||+.|++++.+ |.|.+|+.+ ++.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~-~~~~~~-~~~~-------~~--~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~ 73 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLN-HEGALT-LTQV-------VD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA 73 (343)
T ss_dssp EEEEEEEGGGTEEEEEEEC-TTSCEE-EEEE-------EE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEEEEeCCCCCeEEEEEEC-CCCcEE-Eeee-------Ee--cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc
Confidence 456666 558889999983 122211 1111 11 13468889999999999998887 999999987 665
Q ss_pred EEEeeee--cCcEEEEEECCCCCEEEEEeC-CceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCC
Q 000992 109 TEVVGRV--EGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG 185 (1196)
Q Consensus 109 ~e~vg~~--~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG 185 (1196)
...+... .+.+.+++|||||+.|++++. +++|.+|+.. +........... ....+..++|+|||
T Consensus 74 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~------------~~~~~~~~~~s~dg 140 (343)
T 1ri6_A 74 LTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVDVVE------------GLDGCHSANISPDN 140 (343)
T ss_dssp EEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEEEEC------------CCTTBCCCEECTTS
T ss_pred eeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCcccccccccc------------CCCCceEEEECCCC
Confidence 5433222 347899999999998877765 7889998642 111111111110 11245789999999
Q ss_pred ceEEEeeccccccCCCCEEEEEECCC-CcEEEEe-----ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000992 186 KYFATLSEFCNSSKLHKRLKVWERDS-GTLQASS-----ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1196)
Q Consensus 186 ~~lAsvss~d~~~~~d~~irVWd~~~-G~l~~~~-----e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n- 258 (1196)
++++ +++. .++.|++||..+ |++.... .+....+..++|+|+|+++++++.. ...|.+|+.+
T Consensus 141 ~~l~-~~~~-----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-----~~~i~~~~~~~ 209 (343)
T 1ri6_A 141 RTLW-VPAL-----KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-----NSSVDVWELKD 209 (343)
T ss_dssp SEEE-EEEG-----GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----TTEEEEEESSC
T ss_pred CEEE-EecC-----CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----CCEEEEEEecC
Confidence 9888 5541 358999999866 7664321 2233456889999999988766543 3579999974
Q ss_pred --Cee--EEEEE-eccC--CCCcEEEEEEccCCCeeEEEE-ccCCcceEEEEEec--CCEEEEEEEEEEecCCcEEEEEc
Q 000992 259 --GLE--RSSFD-INEQ--IDSTVELLKWNCMSDLLAAVV-RFEEYDSVKICFFS--NNHWYLKYEIRYLRRDGIRFMWH 328 (1196)
Q Consensus 259 --Gl~--~~~f~-l~~~--~~~~V~~laWSpDg~~LAs~~-~d~~~~~V~lW~~~--n~~wylkq~l~~~~~~~~~v~Ws 328 (1196)
|.. ...+. ++.. ....+..++|+|||+.|+++. .++ .|++|+.. +..+.....+... .....+.|+
T Consensus 210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~---~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s 285 (343)
T 1ri6_A 210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS---LITVFSVSEDGSVLSKEGFQPTE-TQPRGFNVD 285 (343)
T ss_dssp TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT---EEEEEEECTTSCCEEEEEEEECS-SSCCCEEEC
T ss_pred CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC---EEEEEEEcCCCCceEEeeeecCC-CccceEEEC
Confidence 322 11111 1111 123577899999999888665 455 89999998 3333222333221 124678999
Q ss_pred cCCCceEEEEe-cCCcEE
Q 000992 329 PTKPLQLICWT-LDGQIT 345 (1196)
Q Consensus 329 p~~~~~L~~~~-~~g~~~ 345 (1196)
|++.. |.+.. .+|.+.
T Consensus 286 ~dg~~-l~~~~~~~~~v~ 302 (343)
T 1ri6_A 286 HSGKY-LIAAGQKSHHIS 302 (343)
T ss_dssp TTSSE-EEEECTTTCEEE
T ss_pred CCCCE-EEEecCCCCeEE
Confidence 99865 55555 345443
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=3.2e-17 Score=187.94 Aligned_cols=277 Identities=12% Similarity=0.091 Sum_probs=169.8
Q ss_pred CCEEEEEEccCCCEEEEEEC---CCcEEEEECCCCeEEEee---eecCcEEEEEECCCCCEEEEEe-CCceEEEEeccC-
Q 000992 76 DSITAFDYLMEKEALIVGTS---SGLLLLHSVDGNATEVVG---RVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDW- 147 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~---dG~I~lw~~~~~~~e~vg---~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~- 147 (1196)
..+..++|+|||+ |++++. +|.|.+|+.+++..+.+. .+...+..++|||||++|++++ .+++|.+|+..-
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence 4677899999999 666554 689999999887654333 2466789999999999999998 788999987421
Q ss_pred -c--eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEe--cc-
Q 000992 148 -D--LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASS--EL- 220 (1196)
Q Consensus 148 -d--~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~--e~- 220 (1196)
. .+....... . .+. .......+..++|+|||++++ ++. .++.|++|+.. +|++.... ..
T Consensus 119 g~~~~~~~~~~~~--~-~p~----~~~~~~~~~~~~~spdg~l~v-~~~------~~~~v~~~~~~~~g~~~~~~~~~~~ 184 (347)
T 3hfq_A 119 GALTLTDTVQHSG--H-GPR----PEQDGSHIHYTDLTPDNRLAV-IDL------GSDKVYVYNVSDAGQLSEQSVLTME 184 (347)
T ss_dssp SCEEEEEEEECCC--C-CSS----TTCSSCCEEEEEECTTSCEEE-EET------TTTEEEEEEECTTSCEEEEEEEECC
T ss_pred CCeeecceeecCC--C-CCC----ccccCCCceEEEECCCCcEEE-EeC------CCCEEEEEEECCCCcEEEeeeEEcC
Confidence 1 111111000 0 000 001123467899999999555 333 45799999986 57655332 21
Q ss_pred CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC---CeeEEEEEec-cCC----CCcEEEEEEccCCCeeEEEE-
Q 000992 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---GLERSSFDIN-EQI----DSTVELLKWNCMSDLLAAVV- 291 (1196)
Q Consensus 221 ~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n---Gl~~~~f~l~-~~~----~~~V~~laWSpDg~~LAs~~- 291 (1196)
.......++|+|||++|++++.. ...|.+|+.+ |.......+. .+. ...+..++|||||+.|+++.
T Consensus 185 ~g~~p~~~~~spdg~~l~v~~~~-----~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~ 259 (347)
T 3hfq_A 185 AGFGPRHLVFSPDGQYAFLAGEL-----SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR 259 (347)
T ss_dssp TTCCEEEEEECTTSSEEEEEETT-----TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred CCCCCceEEECCCCCEEEEEeCC-----CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence 22245789999999977776543 3578888754 4332211222 111 14588999999999886554
Q ss_pred ccCCcceEEEEEec-CCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecC-CcEEEEEEEEeeecCCCeeEEEEcCCEE
Q 000992 292 RFEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLD-GQITTYNFIWTTAVMENSTALVIDGSKI 369 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~-g~~~~~~~~~~~~~~d~~~v~viDg~~l 369 (1196)
.++ +|.+|++. +..+...+.+..+...+..+.|+|++.. |.+...+ +.+. +|.+++. .|...
T Consensus 260 ~~~---~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~-l~v~~~~~~~v~----v~~~d~~--------tg~l~ 323 (347)
T 3hfq_A 260 GYN---TLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAF-VVVVNQNTDNAT----LYARDLT--------SGKLS 323 (347)
T ss_dssp TTT---EEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSE-EEEEETTTTEEE----EEEECTT--------TCCEE
T ss_pred CCC---EEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCE-EEEEEcCCCcEE----EEEEeCC--------CCeEE
Confidence 455 89999986 3333333334332223478999999875 5666543 5443 3333221 12222
Q ss_pred EEeeccccCCCCCceeeeecC
Q 000992 370 LVTPLSLSLMPPPMYLFSLKF 390 (1196)
Q Consensus 370 ~lt~l~~~~vpppm~~~~l~~ 390 (1196)
.+.. ...+|.|-|...++|
T Consensus 324 ~~~~--~~~~p~p~~~~~~~~ 342 (347)
T 3hfq_A 324 LLQK--DVTVPEGVCVRFLEH 342 (347)
T ss_dssp EEEE--EEECTTEEEEEECC-
T ss_pred eccc--ceecCCCcEEEehhh
Confidence 1111 124678888777764
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.80 E-value=3.2e-17 Score=185.76 Aligned_cols=275 Identities=15% Similarity=0.050 Sum_probs=171.4
Q ss_pred EEEEECCCcEEEEECC-CCeEE---EeeeecCcEEEEEECCCCCEEEEEeCC-ceEEEEeccCc--eeeeeecccccCcc
Q 000992 90 LIVGTSSGLLLLHSVD-GNATE---VVGRVEGGVRFISPSPDGDLLGVTTGF-GQILVMTHDWD--LLYENPLEELAEGF 162 (1196)
Q Consensus 90 La~as~dG~I~lw~~~-~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d-~tV~l~~~~~d--~~~~~~l~~~~~~~ 162 (1196)
+++++.+|.|.+|+.+ ++..+ ... +...+.+++|||||+.|++++.+ +.|.+|+.+-+ .... +....
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~--- 81 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVD-VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--AAESA--- 81 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--EEEEE---
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEe-cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee--ccccc---
Confidence 3344779999999985 34333 233 45678999999999999999886 89999874311 1111 10000
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC---cEEEEeccCCCceeEEEEcCCCCeEEE
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~~e~~~~~v~slawsPdG~~IAs 239 (1196)
. ...+..++|+|||++++ +++. .++.|++||..+| +........ ..+..++|+|+|++|++
T Consensus 82 --------~-~~~~~~~~~s~dg~~l~-~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~ 145 (343)
T 1ri6_A 82 --------L-PGSLTHISTDHQGQFVF-VGSY-----NAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWV 145 (343)
T ss_dssp --------C-SSCCSEEEECTTSSEEE-EEET-----TTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEE
T ss_pred --------c-CCCCcEEEEcCCCCEEE-EEec-----CCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEE
Confidence 0 12457899999999887 4542 3689999998433 444444433 34689999999998888
Q ss_pred EecCCCCCCCCeEEEEeCC--CeeEEEE--EeccCCCCcEEEEEEccCCCeeEEEE-ccCCcceEEEEEec--CCEEEEE
Q 000992 240 VYDRKSENKCPSIVFYERN--GLERSSF--DINEQIDSTVELLKWNCMSDLLAAVV-RFEEYDSVKICFFS--NNHWYLK 312 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~n--Gl~~~~f--~l~~~~~~~V~~laWSpDg~~LAs~~-~d~~~~~V~lW~~~--n~~wylk 312 (1196)
++.. ...|.+|+.+ |...... .+..+....+..++|+|||+.|++++ .++ .|++|++. +..+...
T Consensus 146 ~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~---~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 146 PALK-----QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS---SVDVWELKDPHGNIECV 217 (343)
T ss_dssp EEGG-----GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT---EEEEEESSCTTSCCEEE
T ss_pred ecCC-----CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC---EEEEEEecCCCCcEEEE
Confidence 8732 2479999864 4332211 22222234688999999999887766 555 89999984 3433223
Q ss_pred EEEEEecC------CcEEEEEccCCCceEEEEe-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee
Q 000992 313 YEIRYLRR------DGIRFMWHPTKPLQLICWT-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1196)
Q Consensus 313 q~l~~~~~------~~~~v~Wsp~~~~~L~~~~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~ 385 (1196)
+.+...+. ....+.|+|++.. |.+.. .+|.+. .|++... +..... .
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~-l~v~~~~~~~i~----v~d~~~~---------~~~~~~-------------~ 270 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRH-LYACDRTASLIT----VFSVSED---------GSVLSK-------------E 270 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSE-EEEEETTTTEEE----EEEECTT---------SCCEEE-------------E
T ss_pred eeccccCccccccCCccceEECCCCCE-EEEEecCCCEEE----EEEEcCC---------CCceEE-------------e
Confidence 33331111 1246899999875 44443 345443 3333210 111110 0
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEE-CCCcEEEEeCC
Q 000992 386 FSLKFPTAVTEMAFYSKSSKNCLAAIL-SDGCLCVVDLP 423 (1196)
Q Consensus 386 ~~l~~~~~V~~Vafspdg~~~~lAs~~-~dg~v~lw~~~ 423 (1196)
..+.....+.+++|+|+| +.|++++ .++.|.+|+++
T Consensus 271 ~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 271 GFQPTETQPRGFNVDHSG--KYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEECSSSCCCEEECTTS--SEEEEECTTTCEEEEEEEE
T ss_pred eeecCCCccceEEECCCC--CEEEEecCCCCeEEEEEEc
Confidence 112222336789999999 8888777 57999999765
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=2.4e-18 Score=212.54 Aligned_cols=275 Identities=11% Similarity=-0.015 Sum_probs=174.3
Q ss_pred CEEEEEEccCCCEEEEEEC-CCcEEEEECCCCeEEEeeeec-CcEEEEEECCCCCEEEEEeC---CceEEEEecc-Ccee
Q 000992 77 SITAFDYLMEKEALIVGTS-SGLLLLHSVDGNATEVVGRVE-GGVRFISPSPDGDLLGVTTG---FGQILVMTHD-WDLL 150 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~-dG~I~lw~~~~~~~e~vg~~~-~~I~~~awSPDg~~LA~~s~---d~tV~l~~~~-~d~~ 150 (1196)
.|.+++|+|||+.||+++. ||++.||+.+++....+..+. ..|.+++|||| ++|++++. +....+|..+ |+.-
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g 101 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG 101 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence 6999999999999999987 999999999888776444444 68999999999 77777764 4555665422 1111
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaw 230 (1196)
....+... ......+|+|||+.++.+++ .+..+.|||..+|++........ .+++|
T Consensus 102 ~~~~l~~~---------------~~~~~~~~s~dg~~~~~~s~------~~~~~~l~d~~~g~~~~l~~~~~---~~~~~ 157 (582)
T 3o4h_A 102 EEQRLEAV---------------KPMRILSGVDTGEAVVFTGA------TEDRVALYALDGGGLRELARLPG---FGFVS 157 (582)
T ss_dssp CCEECTTS---------------CSBEEEEEEECSSCEEEEEE------CSSCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred ccccccCC---------------CCceeeeeCCCCCeEEEEec------CCCCceEEEccCCcEEEeecCCC---ceEEE
Confidence 11122111 12346689988875441222 12344499998887766554332 78999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
||||++||+++.+.. ....|.+|+..+.... .+. .+...+.+++|||||+.||++..++ ...|.+|+..+....
T Consensus 158 spDG~~la~~~~~~~--~~~~i~~~d~~~g~~~--~l~-~~~~~~~~~~~SpDG~~l~~~~~~~-~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 158 DIRGDLIAGLGFFGG--GRVSLFTSNLSSGGLR--VFD-SGEGSFSSASISPGMKVTAGLETAR-EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEETTEEEEEEEEET--TEEEEEEEETTTCCCE--EEC-CSSCEEEEEEECTTSCEEEEEECSS-CEEEEEECTTTCCEE
T ss_pred CCCCCEEEEEEEcCC--CCeEEEEEcCCCCCce--Eee-cCCCccccceECCCCCEEEEccCCC-eeEEEEEcCCCCcEE
Confidence 999999998876532 1246888995432222 233 2345789999999999999555443 236999998875431
Q ss_pred EEEEEEEecCCcEEEE--------EccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCC
Q 000992 311 LKYEIRYLRRDGIRFM--------WHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 382 (1196)
Q Consensus 311 lkq~l~~~~~~~~~v~--------Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vppp 382 (1196)
.+..+......+. |+|++ ..+...+.+|.+. +|.+ +....
T Consensus 232 ---~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~-------------------------l~~~-g~~~~-- 279 (582)
T 3o4h_A 232 ---DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSA-------------------------VFID-GERVE-- 279 (582)
T ss_dssp ---ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEE-------------------------EEET-TEEEC--
T ss_pred ---EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEE-------------------------EEEE-CCeec--
Confidence 1211111112334 99998 5455555555332 2222 11000
Q ss_pred ceeeeecCCCCEEEEEEecCCCCCEEEEEECCCc---EEEEeCC
Q 000992 383 MYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGC---LCVVDLP 423 (1196)
Q Consensus 383 m~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~---v~lw~~~ 423 (1196)
...+.|.+++|| || +.+++++.+.+ |.+|+..
T Consensus 280 ------~~~~~v~~~~~s-dg--~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 280 ------APQGNHGRVVLW-RG--KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp ------CCSSEEEEEEEE-TT--EEEEEEEETTEEEEEEEETTC
T ss_pred ------cCCCceEEEEec-CC--EEEEEEcCCCCCCeEEEEcCC
Confidence 123568899999 88 78888887754 5555543
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.79 E-value=5.3e-17 Score=184.18 Aligned_cols=288 Identities=10% Similarity=-0.003 Sum_probs=172.3
Q ss_pred EEccCCCE-EEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeC-CceEEEEecc-Cce-eeeeecc
Q 000992 82 DYLMEKEA-LIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHD-WDL-LYENPLE 156 (1196)
Q Consensus 82 ~~spd~~~-La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~-~d~-~~~~~l~ 156 (1196)
.|.++++. +++.+.+|+|.+||..++++. ........+ +++|||||+.|++++. +++|.+|+.. ... ......
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~- 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE- 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc-
Confidence 35565555 667778999999999987664 333224456 9999999997777765 8899888643 222 111111
Q ss_pred cccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCe
Q 000992 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1196)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~ 236 (1196)
+......++|+|||++++ ++..+ .....|++||..+|+......... ....++|+|||++
T Consensus 82 ---------------~~~~~~~~~~s~dg~~l~-~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~ 141 (331)
T 3u4y_A 82 ---------------GQSSMADVDITPDDQFAV-TVTGL---NHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNG 141 (331)
T ss_dssp ---------------CSSCCCCEEECTTSSEEE-ECCCS---SSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSC
T ss_pred ---------------CCCCccceEECCCCCEEE-EecCC---CCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCE
Confidence 111223399999999998 55421 012299999998898887765433 4589999999997
Q ss_pred EEEEecCCCCCCCCe-EEEEeCC--CeeE-EE-EEeccCCCCcEEEEEEccCCCeeEEEEc-cCCcceEEEEEecCCEE-
Q 000992 237 IAAVYDRKSENKCPS-IVFYERN--GLER-SS-FDINEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVKICFFSNNHW- 309 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~-V~~~e~n--Gl~~-~~-f~l~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~lW~~~n~~w- 309 (1196)
|+++..+. .. |.+|+.+ |... .. ..+ +....+..++|||||+.|+++.. ++ .|++|+..+...
T Consensus 142 l~~~~~~~-----~~~i~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~---~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 142 LILIDRSS-----ANTVRRFKIDADGVLFDTGQEFI--SGGTRPFNITFTPDGNFAFVANLIGN---SIGILETQNPENI 211 (331)
T ss_dssp EEEEEETT-----TTEEEEEEECTTCCEEEEEEEEE--CSSSSEEEEEECTTSSEEEEEETTTT---EEEEEECSSTTSC
T ss_pred EEEEecCC-----CceEEEEEECCCCcEeecCCccc--cCCCCccceEECCCCCEEEEEeCCCC---eEEEEECCCCccc
Confidence 76665532 35 8888854 2221 11 112 22345889999999997766654 55 899999986543
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEec-CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l 388 (1196)
.....+.. ......+.|+|++.. |.+... ++.+ ..|+.. . |....+..+.......|.
T Consensus 212 ~~~~~~~~-~~~~~~~~~spdg~~-l~v~~~~~~~i----~~~d~~--~--------~~~~~~~~~~~~~~~~~~----- 270 (331)
T 3u4y_A 212 TLLNAVGT-NNLPGTIVVSRDGST-VYVLTESTVDV----FNFNQL--S--------GTLSFVKSFGHGLLIDPR----- 270 (331)
T ss_dssp EEEEEEEC-SSCCCCEEECTTSSE-EEEECSSEEEE----EEEETT--T--------TEEEEEEEEECCCCCCCG-----
T ss_pred ceeeeccC-CCCCceEEECCCCCE-EEEEEcCCCEE----EEEECC--C--------CceeeecccccccccCCC-----
Confidence 00122321 122367899999875 444432 2222 123321 1 111111121111100010
Q ss_pred cCCCCEEEEEEecCCCCCEEEEEEC-CCcEEEEeCCCC
Q 000992 389 KFPTAVTEMAFYSKSSKNCLAAILS-DGCLCVVDLPAP 425 (1196)
Q Consensus 389 ~~~~~V~~Vafspdg~~~~lAs~~~-dg~v~lw~~~~~ 425 (1196)
....+..++|+||| +.|++++. +++|.+|++.++
T Consensus 271 -~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 271 -PLFGANQMALNKTE--TKLFISANISRELKVFTISGK 305 (331)
T ss_dssp -GGTTCCCEEECTTS--SEEEEEETTTTEEEEEETTSC
T ss_pred -CcccccceEECCCC--CEEEEecCCCCcEEEEEecCC
Confidence 01112578999999 78766655 569999999753
No 146
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=217.75 Aligned_cols=258 Identities=10% Similarity=0.115 Sum_probs=159.5
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC---------
Q 000992 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS--------- 95 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~--------- 95 (1196)
..+|.+++. +...+.++.|+.|+. .+++.. .+ +..+.. ....+.+++|||||+.|++++.
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~--~~g~~~-~~------~~~~~~-~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~ 88 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNI--ETGQSY-TI------LSNRTM-KSVNASNYGLSPDRQFVYLESDYSKLWRYSY 88 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEES--SSCCEE-EE------ECHHHH-HTTTCSEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEc--CCCcEE-EE------Eccccc-cccceeeEEECCCCCeEEEEecCceeEEeec
Confidence 568889995 444456888999999 554431 11 111100 0013789999999999999987
Q ss_pred CCcEEEEECCCCeE---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 96 SGLLLLHSVDGNAT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 96 dG~I~lw~~~~~~~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
+++|.+||.++++. ..+ ..++.+++|||||+.||+++ +++|.+|+....... .+........| +.++
T Consensus 89 ~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~--~l~~~~~~~~v----~~g~ 158 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF--QITFNGRENKI----FNGI 158 (719)
T ss_dssp EEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE--ECCCCCBTTTE----EESS
T ss_pred ceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE--EEecCCCcCCe----Eccc
Confidence 79999999999876 433 35689999999999999997 679999864321111 11111100001 1111
Q ss_pred CC---------CeEEEEEccCCceEEEeecccccc----------------------------CCCCEEEEEECCCCcEE
Q 000992 173 FS---------FKSPISWRGDGKYFATLSEFCNSS----------------------------KLHKRLKVWERDSGTLQ 215 (1196)
Q Consensus 173 ~~---------~v~~isWspDG~~lAsvss~d~~~----------------------------~~d~~irVWd~~~G~l~ 215 (1196)
.+ ....++|||||++|| .++.+... ....+|++||..+|+..
T Consensus 159 ~~~v~~ee~~~~~~~~~wSPDG~~la-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~ 237 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSPNGKFLA-YAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV 237 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECTTSSEEE-EEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred ccceeeeecccCcccEEECCCCCEEE-EEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence 11 225899999999999 45533110 01238999999777642
Q ss_pred ---EE-----eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe----CCCeeEEEEEec---cCCCCcEE----
Q 000992 216 ---AS-----SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE----RNGLERSSFDIN---EQIDSTVE---- 276 (1196)
Q Consensus 216 ---~~-----~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e----~nGl~~~~f~l~---~~~~~~V~---- 276 (1196)
.. +.++.+.+.+++|||||+++++..... .....|.+|+ ..+..... .+. ..+...|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~--~~~~~l~~~d~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~ 314 (719)
T 1z68_A 238 GPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRV--QNVSVLSICDFREDWQTWDCPK-TQEHIEESRTGWAGGFFV 314 (719)
T ss_dssp CCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESS--TTEEEEEEEEECSSSSSEECCG-GGEEEEECSSSCSSSSSC
T ss_pred ceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccc--cCeEEEEEEcccCCCCCCceEE-EEecccccCCceEccccC
Confidence 22 234677789999999998877754321 1124577888 54321110 010 12334565
Q ss_pred -EEEEccCCCeeEEEEccC-CcceEEEEEecCC
Q 000992 277 -LLKWNCMSDLLAAVVRFE-EYDSVKICFFSNN 307 (1196)
Q Consensus 277 -~laWSpDg~~LAs~~~d~-~~~~V~lW~~~n~ 307 (1196)
.++|||||+.|+....+. +...|.+|+..+.
T Consensus 315 ~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 315 STPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp CCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred CccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 789999999888754332 2235777776554
No 147
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=4.4e-17 Score=207.62 Aligned_cols=206 Identities=13% Similarity=0.142 Sum_probs=137.9
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecC-----cEEEEEECCCCCEEEEEeCCce---------EE
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEG-----GVRFISPSPDGDLLGVTTGFGQ---------IL 141 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~-----~I~~~awSPDg~~LA~~s~d~t---------V~ 141 (1196)
...+++|+|||+.|+++ ||+|++||..+++.. ++..+.. .....+|||||+.||+++.+++ +.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 46689999999988886 999999999988764 4333332 2244899999999999998744 44
Q ss_pred EEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-cc
Q 000992 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-EL 220 (1196)
Q Consensus 142 l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~ 220 (1196)
+|+....... ++..+...+..++|||||+.||+ ++ ++.|++|+..+|+..... .+
T Consensus 96 ~~d~~~~~~~----------------~l~~~~~~~~~~~~SPdG~~la~-~~-------~~~i~~~~~~~~~~~~lt~~g 151 (740)
T 4a5s_A 96 IYDLNKRQLI----------------TEERIPNNTQWVTWSPVGHKLAY-VW-------NNDIYVKIEPNLPSYRITWTG 151 (740)
T ss_dssp EEETTTTEEC----------------CSSCCCTTEEEEEECSSTTCEEE-EE-------TTEEEEESSTTSCCEECCSCC
T ss_pred EEECCCCcEE----------------EcccCCCcceeeEECCCCCEEEE-EE-------CCeEEEEECCCCceEEEcCCC
Confidence 5543211111 11133456799999999999994 43 478999999788766532 23
Q ss_pred CCCce-----------------eEEEEcCCCCeEEEEecCCCC------------------------------CCCCeEE
Q 000992 221 KAFMG-----------------AVLEWMPSGANIAAVYDRKSE------------------------------NKCPSIV 253 (1196)
Q Consensus 221 ~~~~v-----------------~slawsPdG~~IAs~s~d~~~------------------------------~~~~~V~ 253 (1196)
....+ .+++|||||+.||+++.|.+. ....+|.
T Consensus 152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~ 231 (740)
T 4a5s_A 152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF 231 (740)
T ss_dssp BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence 22211 358999999999998765321 0112577
Q ss_pred EEeCCC---e---eEEEEEecc---CCCCcEEEEEEccCCCeeEEEEccCC-cceEEEEEecCCE
Q 000992 254 FYERNG---L---ERSSFDINE---QIDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSNNH 308 (1196)
Q Consensus 254 ~~e~nG---l---~~~~f~l~~---~~~~~V~~laWSpDg~~LAs~~~d~~-~~~V~lW~~~n~~ 308 (1196)
+|+.++ . ...+...+. .+...+.+++|||||++++......+ ...|.+|+..+..
T Consensus 232 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 232 VVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred EEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 788765 3 222221111 13456899999999998887765432 2379999987653
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.77 E-value=1.3e-17 Score=183.68 Aligned_cols=238 Identities=13% Similarity=0.114 Sum_probs=162.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccc-ccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE--CCCc
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQ-NERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT--SSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as--~dG~ 98 (1196)
.+.+++|.+++..|++++ ++.|+.|++ .. ++.. .+ ...+ ....|.+++|+|||+.|++++ .++.
T Consensus 43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~--~~~~~~~-~~------~~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 43 LFEAPNWSPDGKYLLLNS-EGLLYRLSL--AGDPSPE-KV------DTGF---ATICNNDHGISPDGALYAISDKVEFGK 109 (297)
T ss_dssp CCEEEEECTTSSEEEEEE-TTEEEEEES--SSCCSCE-EC------CCTT---CCCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred ceEeeEECCCCCEEEEEc-CCeEEEEeC--CCCCCce-Ee------cccc---ccccccceEECCCCCEEEEEEeCCCCc
Confidence 688999999999999887 557999999 44 3321 11 1111 125688899999999999999 3345
Q ss_pred EEE--EECCCCeEEEeeeecCcEEEEEECCCCCEEE-EEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCC
Q 000992 99 LLL--HSVDGNATEVVGRVEGGVRFISPSPDGDLLG-VTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 99 I~l--w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA-~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
+.| |+..++....+.. ...+.+++|||||+.|+ +++.++++.+|..+.+.-....+ ..+...
T Consensus 110 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~--------------~~~~~~ 174 (297)
T 2ojh_A 110 SAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL--------------THGEGR 174 (297)
T ss_dssp CEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC--------------CCSSSC
T ss_pred ceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc--------------ccCCCc
Confidence 555 5556666554443 34599999999999988 56788989888633211111111 123356
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCC-----CC
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSEN-----KC 249 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~-----~~ 249 (1196)
+.+++|+|||++|+ +++. .++.++||+.. ++........+...+..++|+|+|++||+++.+.... ..
T Consensus 175 ~~~~~~s~dg~~l~-~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 175 NDGPDYSPDGRWIY-FNSS-----RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp EEEEEECTTSSEEE-EEEC-----TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred cccceECCCCCEEE-EEec-----CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence 78999999999988 4441 24677788753 4555666666777789999999999999887653100 12
Q ss_pred CeEEEEeCCCeeE-EEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 250 PSIVFYERNGLER-SSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 250 ~~V~~~e~nGl~~-~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
..|.+|+.++... ....+.. +...|..++|||||+.|++++.+.
T Consensus 249 ~~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 249 VRVQLMDMDGGNVETLFDLFG-GQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEETTSCSCEEEEEEEE-STTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEEEEEecCCCCceeeeccCC-CCcccccceECCCCCEEEEEEecc
Confidence 4688999765332 2222222 245688999999999999998775
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.77 E-value=2.7e-16 Score=179.34 Aligned_cols=282 Identities=8% Similarity=0.011 Sum_probs=185.5
Q ss_pred CCEEEEEEccCCCEEEEEEC-------CCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEec-
Q 000992 76 DSITAFDYLMEKEALIVGTS-------SGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTH- 145 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~-------dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~- 145 (1196)
..+..++|+|||+.|++++. +|.|.+||..+++.. .+. ....+.+++|||||+.|++++ .+++|.+|+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 46889999999999988874 568999999987654 333 345678899999999666654 5789988873
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCce
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v 225 (1196)
..+.+.....+....... ........++|+|||++++ ++.. ..++.|.+||..+|+.......+....
T Consensus 120 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~-~~~~----~~~~~i~~~d~~~~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEE-------VRPLQPRELVADDATNTVY-ISGI----GKESVIWVVDGGNIKLKTAIQNTGKMS 187 (353)
T ss_dssp TCCEEEEEESCCCCCCSS-------CCCCEEEEEEEETTTTEEE-EEEE----SSSCEEEEEETTTTEEEEEECCCCTTC
T ss_pred CCeeEEEEecCCCccccc-------cCCCCCceEEECCCCCEEE-EEec----CCCceEEEEcCCCCceEEEecCCCCcc
Confidence 344444433321110000 0011257899999999887 5542 135889999998999888876455557
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccCCcceEEEEE
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~ 303 (1196)
..++|+|+|+.|+++..+ ..|.+|+. +|.....+..... ....+..++|+|||+.|+++..+. +.|.+|+
T Consensus 188 ~~~~~s~dg~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~v~~~d 259 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTNAD------GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA--AEVLVVD 259 (353)
T ss_dssp CCCEEETTTTEEEEECTT------SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS--SEEEEEE
T ss_pred ceEEECCCCCEEEEEcCC------CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC--CEEEEEE
Confidence 899999999999988764 46889995 4544444433211 234588999999999888877652 2899999
Q ss_pred ecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEec-CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCC
Q 000992 304 FSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 382 (1196)
Q Consensus 304 ~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vppp 382 (1196)
..+... ...+.. .....+.|+|++.. +.+... ++.+. .|+.. .+..+
T Consensus 260 ~~~~~~--~~~~~~--~~~~~~~~s~dg~~-l~v~~~~~~~v~----~~d~~----------~~~~~------------- 307 (353)
T 3vgz_A 260 TRNGNI--LAKVAA--PESLAVLFNPARNE-AYVTHRQAGKVS----VIDAK----------SYKVV------------- 307 (353)
T ss_dssp TTTCCE--EEEEEC--SSCCCEEEETTTTE-EEEEETTTTEEE----EEETT----------TTEEE-------------
T ss_pred CCCCcE--EEEEEc--CCCceEEECCCCCE-EEEEECCCCeEE----EEECC----------CCeEE-------------
Confidence 987653 223332 22356889998865 444442 33332 22211 11111
Q ss_pred ceeeeecCCCCEEEEEEecCCCCCEEEEEECCC
Q 000992 383 MYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 415 (1196)
Q Consensus 383 m~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg 415 (1196)
..+.....+.+++|+||| +.|.+...++
T Consensus 308 ---~~~~~~~~~~~~~~s~dg--~~l~v~~~~~ 335 (353)
T 3vgz_A 308 ---KTFDTPTHPNSLALSADG--KTLYVSVKQK 335 (353)
T ss_dssp ---EEEECCSEEEEEEECTTS--CEEEEEEECC
T ss_pred ---EEEecCCCCCeEEEcCCC--CEEEEEEccc
Confidence 122334467899999999 7777665553
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.77 E-value=4.9e-16 Score=177.18 Aligned_cols=265 Identities=9% Similarity=-0.012 Sum_probs=183.2
Q ss_pred ceeEEeeecCCCEEEEEeC-------CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE
Q 000992 22 ILQFSALDIEQNRLFFASS-------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as 94 (1196)
.+..++++++++.+|+++. ++.|+.||. .+++....+ + . +..+.+++|+|||+.++++.
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~--~~~~~~~~~---~-------~--~~~~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDP--VTLEVTQAI---H-------N--DLKPFGATINNTTQTLWFGN 107 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECT--TTCCEEEEE---E-------E--SSCCCSEEEETTTTEEEEEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcC--CCCeEEEEE---e-------c--CCCcceEEECCCCCEEEEEe
Confidence 5678899999999999874 457999998 554432221 1 1 23577899999999666554
Q ss_pred -CCCcEEEEECCCCeEE-EeeeecC---------cEEEEEECCCCCEEEEEe--CCceEEEEec-cCceeeeeecccccC
Q 000992 95 -SSGLLLLHSVDGNATE-VVGRVEG---------GVRFISPSPDGDLLGVTT--GFGQILVMTH-DWDLLYENPLEELAE 160 (1196)
Q Consensus 95 -~dG~I~lw~~~~~~~e-~vg~~~~---------~I~~~awSPDg~~LA~~s--~d~tV~l~~~-~~d~~~~~~l~~~~~ 160 (1196)
.++.|.+||..++++. .+....+ .+.+++|||||+.|++++ .++.|.+|+. .+..+.....
T Consensus 108 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~----- 182 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN----- 182 (353)
T ss_dssp TTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-----
T ss_pred cCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-----
Confidence 4799999999887653 3332111 278999999999988887 3778988863 2333322221
Q ss_pred ccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc----CCCceeEEEEcCCCCe
Q 000992 161 GFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL----KAFMGAVLEWMPSGAN 236 (1196)
Q Consensus 161 ~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~----~~~~v~slawsPdG~~ 236 (1196)
+......++|+|||++++ ++. .++.|.+||..+|+....... +......++|+|+|+.
T Consensus 183 -----------~~~~~~~~~~s~dg~~l~-~~~------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 244 (353)
T 3vgz_A 183 -----------TGKMSTGLALDSEGKRLY-TTN------ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQR 244 (353)
T ss_dssp -----------CCTTCCCCEEETTTTEEE-EEC------TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred -----------CCCccceEEECCCCCEEE-EEc------CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCE
Confidence 112346799999999988 564 357999999989988876543 3445678999999998
Q ss_pred EEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEc-cCCcceEEEEEecCCEEEEEEE
Q 000992 237 IAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~lW~~~n~~wylkq~ 314 (1196)
|+.+... ...|.+|+. +|.....+.+. . ...++|+|||+.|.++.. ++ +|.+|+..+... .+.
T Consensus 245 l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~--~---~~~~~~s~dg~~l~v~~~~~~---~v~~~d~~~~~~--~~~ 309 (353)
T 3vgz_A 245 AFITDSK-----AAEVLVVDTRNGNILAKVAAP--E---SLAVLFNPARNEAYVTHRQAG---KVSVIDAKSYKV--VKT 309 (353)
T ss_dssp EEEEESS-----SSEEEEEETTTCCEEEEEECS--S---CCCEEEETTTTEEEEEETTTT---EEEEEETTTTEE--EEE
T ss_pred EEEEeCC-----CCEEEEEECCCCcEEEEEEcC--C---CceEEECCCCCEEEEEECCCC---eEEEEECCCCeE--EEE
Confidence 8777654 357999996 45444433322 1 246999999997777664 55 899999987653 233
Q ss_pred EEEecCCcEEEEEccCCCceEEEEec
Q 000992 315 IRYLRRDGIRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 315 l~~~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1196)
+... .....+.|+|++.. |.+...
T Consensus 310 ~~~~-~~~~~~~~s~dg~~-l~v~~~ 333 (353)
T 3vgz_A 310 FDTP-THPNSLALSADGKT-LYVSVK 333 (353)
T ss_dssp EECC-SEEEEEEECTTSCE-EEEEEE
T ss_pred EecC-CCCCeEEEcCCCCE-EEEEEc
Confidence 3321 22378899999875 455443
No 151
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.77 E-value=1.2e-16 Score=181.13 Aligned_cols=264 Identities=10% Similarity=-0.014 Sum_probs=167.2
Q ss_pred EeeecCCCEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC-CCcEEEEE
Q 000992 26 SALDIEQNRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS-SGLLLLHS 103 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~-dG~I~lw~ 103 (1196)
..|+.+++.+|+.+ .++.|..||. .+++....+ + .+...+ +++|+|||+.|++++. ++.|.+||
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~--~~~~~~~~~---~--------~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d 68 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFST--DTLEILNQI---T--------LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIE 68 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEET--TTCCEEEEE---E--------CCCCEE-EEEECSSSCEEEEEESTTCEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeC--cccceeeeE---E--------ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEE
Confidence 45778888888774 4778999998 555432111 1 112356 9999999997777766 88999999
Q ss_pred CCCCeE--EEeeeecCcEEEEEECCCCCEEEEEeCCc---eEEEEecc-CceeeeeecccccCccccccCccccCCCCeE
Q 000992 104 VDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFG---QILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 104 ~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~s~d~---tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
..++++ .....+...+.+++|||||++|+++..++ +|.+|+.. ...+..... .....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------------~~~~~ 131 (331)
T 3u4y_A 69 TQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-----------------PYDAV 131 (331)
T ss_dssp CSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-----------------CTTEE
T ss_pred CCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-----------------CCCcc
Confidence 988764 34444344444499999999999554442 89998742 333322221 12347
Q ss_pred EEEEccCCceEEEeeccccccCCCCE-EEEEECCC-CcEEEE---eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKR-LKVWERDS-GTLQAS---SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~-irVWd~~~-G~l~~~---~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.++|+|||++++ ++.. .++. |++|+... |.+... ..........++|+|||++++.+... ...|
T Consensus 132 ~~~~spdg~~l~-~~~~-----~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v 200 (331)
T 3u4y_A 132 GIAISPNGNGLI-LIDR-----SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI-----GNSI 200 (331)
T ss_dssp EEEECTTSSCEE-EEEE-----TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT-----TTEE
T ss_pred ceEECCCCCEEE-EEec-----CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC-----CCeE
Confidence 999999999776 4432 2355 99999753 333211 11233446899999999977666543 3579
Q ss_pred EEEeCC-Cee---EEEEEeccCCCCcEEEEEEccCCCeeEEEEc-cCCcceEEEEEecCCEEEEEEEEEEe----cCCc-
Q 000992 253 VFYERN-GLE---RSSFDINEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVKICFFSNNHWYLKYEIRYL----RRDG- 322 (1196)
Q Consensus 253 ~~~e~n-Gl~---~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~lW~~~n~~wylkq~l~~~----~~~~- 322 (1196)
.+|+.. |.. ... ++ ....+..++|||||+.|+++.. ++ .|.+|+..+......+.+... +...
T Consensus 201 ~v~d~~~~~~~~~~~~--~~--~~~~~~~~~~spdg~~l~v~~~~~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
T 3u4y_A 201 GILETQNPENITLLNA--VG--TNNLPGTIVVSRDGSTVYVLTESTV---DVFNFNQLSGTLSFVKSFGHGLLIDPRPLF 273 (331)
T ss_dssp EEEECSSTTSCEEEEE--EE--CSSCCCCEEECTTSSEEEEECSSEE---EEEEEETTTTEEEEEEEEECCCCCCCGGGT
T ss_pred EEEECCCCcccceeee--cc--CCCCCceEEECCCCCEEEEEEcCCC---EEEEEECCCCceeeecccccccccCCCCcc
Confidence 999964 443 222 32 2245778999999998877654 33 799999988764333333211 1001
Q ss_pred --EEEEEccCCCceEEEEe
Q 000992 323 --IRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 323 --~~v~Wsp~~~~~L~~~~ 339 (1196)
..+.|+|++.. |.+.+
T Consensus 274 ~~~~~~~spdg~~-l~v~~ 291 (331)
T 3u4y_A 274 GANQMALNKTETK-LFISA 291 (331)
T ss_dssp TCCCEEECTTSSE-EEEEE
T ss_pred cccceEECCCCCE-EEEec
Confidence 23688988865 44444
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.76 E-value=1.3e-16 Score=182.90 Aligned_cols=245 Identities=12% Similarity=0.113 Sum_probs=160.9
Q ss_pred ceeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCC
Q 000992 22 ILQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~dG 97 (1196)
.+..++|++++. ||+++. ++.|+.|++ ..+..+ .+.+ +..+ ...+..++|+|||+.|++++ .+|
T Consensus 41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~--~~g~~~-~~~~----~~~~----~~~p~~~a~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQI--DGQTAH-KLNT----VVAP----GTPPAYVAVDEARQLVYSANYHKG 108 (347)
T ss_dssp CCCCEEECTTCE-EEEEEEETTEEEEEEEEE--ETTEEE-EEEE----EEEE----SCCCSEEEEETTTTEEEEEETTTT
T ss_pred CcceEEEccCCe-EEEEEecCCCceEEEEEe--cCCcEE-Eeee----eecC----CCCCEEEEECCCCCEEEEEeCCCC
Confidence 567799999999 888875 578999998 444321 1211 1111 35688999999999999888 789
Q ss_pred cEEEEECC-CCeEEEeeeec------------CcEEEEEECCCCCEEEEEeCCceEEEEecc--CceeeeeecccccCcc
Q 000992 98 LLLLHSVD-GNATEVVGRVE------------GGVRFISPSPDGDLLGVTTGFGQILVMTHD--WDLLYENPLEELAEGF 162 (1196)
Q Consensus 98 ~I~lw~~~-~~~~e~vg~~~------------~~I~~~awSPDg~~LA~~s~d~tV~l~~~~--~d~~~~~~l~~~~~~~ 162 (1196)
+|.+|+.+ ++....+..+. ..+.+++|||||+++++..++++|.+|+.. ...........
T Consensus 109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~----- 183 (347)
T 3hfq_A 109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM----- 183 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC-----
T ss_pred EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc-----
Confidence 99999985 34443222211 248899999999966666678899998743 11111000000
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CCcEEE--EeccCC------CceeEEEEcC
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQA--SSELKA------FMGAVLEWMP 232 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G~l~~--~~e~~~------~~v~slawsP 232 (1196)
........++|+|||++++ ++. ..++.|++|+.+ +|++.. ...... .....++|+|
T Consensus 184 --------~~g~~p~~~~~spdg~~l~-v~~-----~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 184 --------EAGFGPRHLVFSPDGQYAF-LAG-----ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp --------CTTCCEEEEEECTTSSEEE-EEE-----TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred --------CCCCCCceEEECCCCCEEE-EEe-----CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 0112457899999999877 443 246899999874 366432 222111 3468899999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC--CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERN--GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~n--Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
||++|+.+... ...|.+|+.+ |.......++.+ ...+..++|||||+.|+++..+. +.|++|++.
T Consensus 250 dG~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~--~~v~v~~~d 316 (347)
T 3hfq_A 250 DGHFLYVSNRG-----YNTLAVFAVTADGHLTLIQQISTE-GDFPRDFDLDPTEAFVVVVNQNT--DNATLYARD 316 (347)
T ss_dssp TSCEEEEEEET-----TTEEEEEEECGGGCEEEEEEEECS-SSCCCEEEECTTSSEEEEEETTT--TEEEEEEEC
T ss_pred CCCEEEEEeCC-----CCEEEEEEECCCCcEEEeEEEecC-CCCcCeEEECCCCCEEEEEEcCC--CcEEEEEEe
Confidence 99988655443 3579999864 422211122221 23578999999999999988753 289999654
No 153
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=2.6e-17 Score=209.67 Aligned_cols=265 Identities=12% Similarity=0.086 Sum_probs=167.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEEECC----
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSS---- 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~spd~~~La~as~d---- 96 (1196)
.....+|.+|+..|++. ++.|+.|+. .+++.. .+ +..+.+.. .....+++|||||+.|++++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~--~~~~~~-~~------~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 86 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNA--EYGNSS-VF------LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW 86 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEET--TTCCEE-EE------ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred cccccEECCCCcEEEEc--CCcEEEEEC--CCCceE-EE------EechhhhhhcccccceEECCCCCEEEEEECCeeeE
Confidence 34568899999877775 788999999 555532 11 22222211 1123568999999999999876
Q ss_pred -----CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCcccc
Q 000992 97 -----GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 97 -----G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
|++.+||..++++..+..+.+.+..++|||||+.||+++ +++|.+|+...... ..+........+ +.+
T Consensus 87 r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~--~~lt~~g~~~~~----~~g 159 (740)
T 4a5s_A 87 RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS--YRITWTGKEDII----YNG 159 (740)
T ss_dssp SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC--EECCSCCBTTTE----EES
T ss_pred EEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce--EEEcCCCCccce----ecC
Confidence 677899999998775555677899999999999999996 57898886432211 122111100000 111
Q ss_pred CC---------CCeEEEEEccCCceEEEeeccccc------------------------------cCCCCEEEEEECCC-
Q 000992 172 SF---------SFKSPISWRGDGKYFATLSEFCNS------------------------------SKLHKRLKVWERDS- 211 (1196)
Q Consensus 172 ~~---------~~v~~isWspDG~~lAsvss~d~~------------------------------~~~d~~irVWd~~~- 211 (1196)
+. .....++|||||++||+ .+.+.. .....+|+|||..+
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSpDg~~la~-~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSPNGTFLAY-AQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL 238 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECTTSSEEEE-EEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred cccccccchhcCCCcceEECCCCCEEEE-EEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence 11 12246899999999994 432211 00112689999977
Q ss_pred --C---cEEEEec-----cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEE----EEe-ccCCCCcE
Q 000992 212 --G---TLQASSE-----LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSS----FDI-NEQIDSTV 275 (1196)
Q Consensus 212 --G---~l~~~~e-----~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~----f~l-~~~~~~~V 275 (1196)
| +...... +++..+..++|||||++++....... ....|.+|+.+ |..... ..+ ...+..+|
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~--~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v 316 (740)
T 4a5s_A 239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ--NYSVMDICDYDESSGRWNCLVARQHIEMSTTGWV 316 (740)
T ss_dssp CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST--TEEEEEEEEEETTTTEEEECGGGCEEEECSSSCS
T ss_pred CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC--CEEEEEEEECCCCccccceeEEEEeeeccCCceE
Confidence 6 4444433 26778899999999998877654321 13468888854 320000 001 11123344
Q ss_pred E-----EEEEccCCCeeE-EEEccCCcceEEEEEecCC
Q 000992 276 E-----LLKWNCMSDLLA-AVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 276 ~-----~laWSpDg~~LA-s~~~d~~~~~V~lW~~~n~ 307 (1196)
. +++|||||+.|+ ..+...+...|.+|+..+.
T Consensus 317 ~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 317 GRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp SSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred ccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 4 789999999998 6665544446888887653
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.73 E-value=1.1e-15 Score=177.53 Aligned_cols=243 Identities=11% Similarity=0.016 Sum_probs=154.5
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECC-CCeEEEeeeec--CcEEEEEECCCCCE--EEEEe-------------CC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVD-GNATEVVGRVE--GGVRFISPSPDGDL--LGVTT-------------GF 137 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~-~~~~e~vg~~~--~~I~~~awSPDg~~--LA~~s-------------~d 137 (1196)
..+..++|+|||+.|++++.+ +|.+|+.+ ++++.....+. +...+++|||||+. |+++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 357889999999999999887 99999986 66654222222 33566899999995 44443 68
Q ss_pred ceEEEEecc--CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcE
Q 000992 138 GQILVMTHD--WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTL 214 (1196)
Q Consensus 138 ~tV~l~~~~--~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l 214 (1196)
+++.+|..+ +........... .+...+..++|+|||++++ ++.. ++.+|++|+.+ +|++
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~------------~~~~~~~~~~~spdG~~l~-~~~~-----~~~~v~~~~~~~~g~~ 180 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEY------------QENTGIHGMVFDPTETYLY-SADL-----TANKLWTHRKLASGEV 180 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEEC------------CTTCCEEEEEECTTSSEEE-EEET-----TTTEEEEEEECTTSCE
T ss_pred ceEEEEccCCCCcCcceEeeEEe------------CCCCcceEEEECCCCCEEE-EEcC-----CCCEEEEEEECCCCCE
Confidence 889888643 322211111000 1124568999999999888 5542 35799999997 7876
Q ss_pred EEE--ec--cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC---CCeeE---EEEE-eccC--CCC-------c
Q 000992 215 QAS--SE--LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER---NGLER---SSFD-INEQ--IDS-------T 274 (1196)
Q Consensus 215 ~~~--~e--~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~---nGl~~---~~f~-l~~~--~~~-------~ 274 (1196)
... .. .+......++|+|||++|+++... ...|.+|+. +|... ..+. ++.. ... .
T Consensus 181 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~-----~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 255 (365)
T 1jof_A 181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA-----GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY 255 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred EEeeeEecCCCCCCCCEeEECCCCCEEEEEECC-----CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc
Confidence 432 22 123457899999999999888754 357888864 35432 1111 2211 112 5
Q ss_pred EEEEE-EccCCCeeEEEEccCC---cceEEEEEec-CCEEEEEEE---EEEecCCcEEEEEcc---CCCceEEEEec-CC
Q 000992 275 VELLK-WNCMSDLLAAVVRFEE---YDSVKICFFS-NNHWYLKYE---IRYLRRDGIRFMWHP---TKPLQLICWTL-DG 342 (1196)
Q Consensus 275 V~~la-WSpDg~~LAs~~~d~~---~~~V~lW~~~-n~~wylkq~---l~~~~~~~~~v~Wsp---~~~~~L~~~~~-~g 342 (1196)
+..++ |||||+.|+++..+.. .++|++|++. +.. +... +......+..+.|+| ++.. |.+.+. ++
T Consensus 256 ~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~--~~~~~~~~~~~~~~~~~~a~sp~~~dg~~-l~v~~~~~~ 332 (365)
T 1jof_A 256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS--IEKQLFLSPTPTSGGHSNAVSPCPWSDEW-MAITDDQEG 332 (365)
T ss_dssp EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC--EEEEEEEEECSSCCTTCCCEEECTTCTTE-EEEECSSSC
T ss_pred cccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC--EEEeeeeeecCCCCcccceecCCCcCCCE-EEEEEcCCC
Confidence 88999 9999999988765431 1179999986 443 2221 211222335678999 6654 666654 35
Q ss_pred cEE
Q 000992 343 QIT 345 (1196)
Q Consensus 343 ~~~ 345 (1196)
.+.
T Consensus 333 ~v~ 335 (365)
T 1jof_A 333 WLE 335 (365)
T ss_dssp EEE
T ss_pred eEE
Confidence 443
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=4.3e-16 Score=186.10 Aligned_cols=213 Identities=11% Similarity=0.065 Sum_probs=149.8
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCC-----------CeEE-----EeeeecCcEEEEEECCCCCEEE----EE
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG-----------NATE-----VVGRVEGGVRFISPSPDGDLLG----VT 134 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~-----------~~~e-----~vg~~~~~I~~~awSPDg~~LA----~~ 134 (1196)
...+..+++++++..|++++.+| |++|+... ..+. ..-.+.+.|.+++|||||++|| ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44688899999999999999998 88876421 1111 0112356799999999999999 67
Q ss_pred eCCceEEEEeccCceeeeeecccccCccccc-cCccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCC
Q 000992 135 TGFGQILVMTHDWDLLYENPLEELAEGFDVH-EPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSG 212 (1196)
Q Consensus 135 s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs-~tqf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G 212 (1196)
+.|++|++|+..-. ..+.. . ..+.+. ...+.+|.+.|.+++|+|+ +.+|| +++ .|++|+|||..++
T Consensus 115 s~d~~v~iwd~~~~-~~~~~-~---~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la-s~s------~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 115 EYGSIIAFFDVRTF-SNEAK-Q---QKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVA-VCL------ADGSIAVLQVTET 182 (434)
T ss_dssp TTEEEEEEEEHHHH-HCTTC-S---SCCCSEEEECCCSGGGSEEEEEECSSCTTEEE-EEE------TTSCEEEEEESSS
T ss_pred CCCceEEEEEcccc-ccCCc-C---CcceeeeeeccCCCCCceEEEEECCCCCCEEE-EEE------CCCeEEEEEcCCC
Confidence 88999999863210 00000 0 000000 0123356778999999998 88999 565 4699999999888
Q ss_pred cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccC----CCCcEEEEEEccCCCeeE
Q 000992 213 TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ----IDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 213 ~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~----~~~~V~~laWSpDg~~LA 288 (1196)
.......+|...+.+++|+|+|++||+++.|+ .|++|+..|.....+..+.. +...|.+++|++++.+++
T Consensus 183 ~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 183 VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNG------TVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp EEEEEEECGGGCEEEEEECTTSSCEEEEETTS------CEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred cceeeccCCCCceeEEEEcCCCCEEEEEcCCC------cEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 77666667888899999999999999999864 69999987654443332211 123799999999999987
Q ss_pred EEEccCC----cceEEEEEecC
Q 000992 289 AVVRFEE----YDSVKICFFSN 306 (1196)
Q Consensus 289 s~~~d~~----~~~V~lW~~~n 306 (1196)
+.+...+ ...+++|++.+
T Consensus 257 ~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 257 VYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEETTCCSSSCCEEEEEECCC
T ss_pred EEccCCCccCCCCceEEEEecc
Confidence 7554321 12599999864
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.72 E-value=6.1e-15 Score=170.07 Aligned_cols=282 Identities=11% Similarity=0.063 Sum_probs=168.5
Q ss_pred cCCCEEEEEE----CCCcEEEEEC--CCCeEEEeee-ecCcEEEEEECCCCCEEEEEeCC----ceEEEEeccCc--eee
Q 000992 85 MEKEALIVGT----SSGLLLLHSV--DGNATEVVGR-VEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWD--LLY 151 (1196)
Q Consensus 85 pd~~~La~as----~dG~I~lw~~--~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~d----~tV~l~~~~~d--~~~ 151 (1196)
+....+.+|+ .++.|.+|.. .+++++.+.. +......++|||||++|++++.+ +.|.+|..+-+ .+.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3334445553 4568999865 5566543222 45667889999999999999886 78988864321 111
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-CcEEEE-----ecc-----
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GTLQAS-----SEL----- 220 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~l~~~-----~e~----- 220 (1196)
. +.... .+......++| ||++++ ++.. .+++|.+|+..+ |.+... ..+
T Consensus 91 ~--~~~~~-----------~~~~~p~~~~~--dg~~l~-~~~~-----~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~ 149 (361)
T 3scy_A 91 L--LNTQK-----------TMGADPCYLTT--NGKNIV-TANY-----SGGSITVFPIGQDGALLPASDVIEFKGSGPDK 149 (361)
T ss_dssp E--EEEEE-----------CSSSCEEEEEE--CSSEEE-EEET-----TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCT
T ss_pred E--eeEec-----------cCCCCcEEEEE--CCCEEE-EEEC-----CCCEEEEEEeCCCCcCcccceeEEccCCCCCc
Confidence 1 11000 11234467888 999888 5542 468999999853 332111 111
Q ss_pred ---CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC--C-------eeEE-E-EEeccCCCCcEEEEEEccCCCe
Q 000992 221 ---KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN--G-------LERS-S-FDINEQIDSTVELLKWNCMSDL 286 (1196)
Q Consensus 221 ---~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n--G-------l~~~-~-f~l~~~~~~~V~~laWSpDg~~ 286 (1196)
.....++++|+|||++|+++... ...|.+|+.+ + +... . -....+....+..++|||||+.
T Consensus 150 ~~~~~~~~~~~~~spdg~~l~~~~~~-----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~ 224 (361)
T 3scy_A 150 ERQTMPHLHCVRITPDGKYLLADDLG-----TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF 224 (361)
T ss_dssp TTCSSCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred cccCCCcceEEEECCCCCEEEEEeCC-----CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE
Confidence 12234789999999987776643 3578889643 2 2111 0 0112222345889999999999
Q ss_pred eEEEEc-cCCcceEEEEEecCCEEEEEEEEEEecC---CcEEEEEccCCCceEEEEecC--CcEEEEEEEEeeecCCCee
Q 000992 287 LAAVVR-FEEYDSVKICFFSNNHWYLKYEIRYLRR---DGIRFMWHPTKPLQLICWTLD--GQITTYNFIWTTAVMENST 360 (1196)
Q Consensus 287 LAs~~~-d~~~~~V~lW~~~n~~wylkq~l~~~~~---~~~~v~Wsp~~~~~L~~~~~~--g~~~~~~~~~~~~~~d~~~ 360 (1196)
|+++.. ++ .|++|+..+..+...+.+..... ....+.|+|++.. |.+...+ +.+. +|++++.
T Consensus 225 l~v~~~~~~---~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~-l~v~~~~~~~~i~----v~~~~~~---- 292 (361)
T 3scy_A 225 AYLINEIGG---TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKY-LYASNRLKADGVA----IFKVDET---- 292 (361)
T ss_dssp EEEEETTTC---EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSE-EEEEECSSSCEEE----EEEECTT----
T ss_pred EEEEcCCCC---eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCE-EEEECCCCCCEEE----EEEEcCC----
Confidence 988874 55 89999998766543444432221 1267899999875 5454433 3333 2333211
Q ss_pred EEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEE-CCCcEEEEeCCC
Q 000992 361 ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL-SDGCLCVVDLPA 424 (1196)
Q Consensus 361 v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~-~dg~v~lw~~~~ 424 (1196)
+|....+. .+.....+.+++||||| +.|+++. .+++|.+|+++.
T Consensus 293 ----~g~~~~~~--------------~~~~g~~~~~~~~spdg--~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 293 ----NGTLTKVG--------------YQLTGIHPRNFIITPNG--KYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp ----TCCEEEEE--------------EEECSSCCCEEEECTTS--CEEEEEETTTTEEEEEEECT
T ss_pred ----CCcEEEee--------------EecCCCCCceEEECCCC--CEEEEEECCCCCEEEEEEEC
Confidence 12111111 11112356789999999 8888887 578999987763
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.72 E-value=6.8e-16 Score=174.28 Aligned_cols=262 Identities=9% Similarity=-0.002 Sum_probs=170.2
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCC---CEEEEEEccCCCEEEE-EECCCcEEEEECCCCe
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGD---SITAFDYLMEKEALIV-GTSSGLLLLHSVDGNA 108 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~v~~v~~spd~~~La~-as~dG~I~lw~~~~~~ 108 (1196)
+.+++++.++.|..||. .+++....+ +. +. .+..++|+|||+.|++ .+.++.|.+||..+++
T Consensus 2 ~~~v~~~~~~~v~~~d~--~~~~~~~~~----------~~--~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 67 (337)
T 1pby_B 2 DYILAPARPDKLVVIDT--EKMAVDKVI----------TI--ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE 67 (337)
T ss_dssp EEEEEEETTTEEEEEET--TTTEEEEEE----------EC--TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC
T ss_pred cEEEEcCCCCeEEEEEC--CCCcEEEEE----------Ec--CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC
Confidence 35677788899999998 554431111 11 12 4788999999987754 4557899999998876
Q ss_pred EE-Eee--e---ecCcEEEEEECCCCCEEEEEe------------CCceEEEEecc-CceeeeeecccccCccccccCcc
Q 000992 109 TE-VVG--R---VEGGVRFISPSPDGDLLGVTT------------GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPEL 169 (1196)
Q Consensus 109 ~e-~vg--~---~~~~I~~~awSPDg~~LA~~s------------~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf 169 (1196)
.. .+. . +...+.+++|||||+.|++++ .++.|.+|+.. ...+.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------- 133 (337)
T 1pby_B 68 TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-------------- 133 (337)
T ss_dssp EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--------------
T ss_pred eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--------------
Confidence 43 222 1 122677899999999999986 57899988742 222222211
Q ss_pred ccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCC---
Q 000992 170 SSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE--- 246 (1196)
Q Consensus 170 ~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~--- 246 (1196)
...+..++|+|||++++ +++ +.|++||..+|++........ ....++|+|||+.++.++.....
T Consensus 134 ---~~~~~~~~~s~dg~~l~-~~~--------~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~ 200 (337)
T 1pby_B 134 ---PRQITMLAWARDGSKLY-GLG--------RDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMAT 200 (337)
T ss_dssp ---CSSCCCEEECTTSSCEE-EES--------SSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred ---CCCcceeEECCCCCEEE-EeC--------CeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceee
Confidence 12346789999999888 553 579999998898877665332 11345899999987665432110
Q ss_pred ---------------CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 247 ---------------NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 247 ---------------~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
.....|.+|+..........+. ++...+..++|||||+.|+++ ++ .|.+|+..+...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~--~~---~v~~~d~~~~~~-- 272 (337)
T 1pby_B 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR-IMDVFYFSTAVNPAKTRAFGA--YN---VLESFDLEKNAS-- 272 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE-ECSSCEEEEEECTTSSEEEEE--ES---EEEEEETTTTEE--
T ss_pred eeeccccccccccccccccceEEEeCCCCCceEeecC-CCCCceeeEEECCCCCEEEEe--CC---eEEEEECCCCcC--
Confidence 0001467788654332222222 223468899999999999988 45 799999987642
Q ss_pred EEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
.+.+.. ......+.|+|++.. |.+...++.+.
T Consensus 273 ~~~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~i~ 304 (337)
T 1pby_B 273 IKRVPL-PHSYYSVNVSTDGST-VWLGGALGDLA 304 (337)
T ss_dssp EEEEEC-SSCCCEEEECTTSCE-EEEESBSSEEE
T ss_pred cceecC-CCceeeEEECCCCCE-EEEEcCCCcEE
Confidence 233332 123377899999874 55555455543
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.72 E-value=1.2e-15 Score=172.39 Aligned_cols=274 Identities=10% Similarity=-0.004 Sum_probs=171.5
Q ss_pred CEEEEEECCCcEEEEECCCCeEE-EeeeecC---cEEEEEECCCCCEEEEE-eCCceEEEEec-cCceeeeeecccccCc
Q 000992 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEG---GVRFISPSPDGDLLGVT-TGFGQILVMTH-DWDLLYENPLEELAEG 161 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~---~I~~~awSPDg~~LA~~-s~d~tV~l~~~-~~d~~~~~~l~~~~~~ 161 (1196)
+.|++++.+|+|.+||..+++.. .+. +.. .+.+++|||||+.|+++ +.++.|.+|+. ....+.........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVIT-IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE-- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE-CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEE-cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--
Confidence 46889999999999999987654 332 233 48899999999877555 45789999873 34433333321100
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeecccc----ccC--CCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN----SSK--LHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~----~~~--~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
.+...+..++|+|||++++ ++.... ... .++.|++||..+|+....... ...+..++|+|||+
T Consensus 79 ---------~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~ 147 (337)
T 1pby_B 79 ---------ERVKSLFGAALSPDGKTLA-IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGS 147 (337)
T ss_dssp ---------EEEECTTCEEECTTSSEEE-EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSS
T ss_pred ---------cccccccceEECCCCCEEE-EEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCC
Confidence 0011346799999999888 553100 000 258999999988888776654 34468899999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcc-----------------
Q 000992 236 NIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD----------------- 297 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~----------------- 297 (1196)
+|++++ ..|.+|+.. |..... ++.+. ....++|+|||+.|++.......-
T Consensus 148 ~l~~~~--------~~i~~~d~~~~~~~~~--~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 148 KLYGLG--------RDLHVMDPEAGTLVED--KPIQS--WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp CEEEES--------SSEEEEETTTTEEEEE--ECSTT--TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred EEEEeC--------CeEEEEECCCCcEeee--eeccc--cCCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 888873 259999965 433322 22211 011348999999887665433100
Q ss_pred ----eEEEEEecCCEEEEEEEEEEecC--CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEE
Q 000992 298 ----SVKICFFSNNHWYLKYEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILV 371 (1196)
Q Consensus 298 ----~V~lW~~~n~~wylkq~l~~~~~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~l 371 (1196)
.|.+|+..+.... .+.+... ....+.|+|++.. +.+. ++.+. .|+.. .+..+
T Consensus 216 ~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~-l~~~--~~~v~----~~d~~----------~~~~~-- 273 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLE----SFDLE----------KNASI-- 273 (337)
T ss_dssp GEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECTTSSE-EEEE--ESEEE----EEETT----------TTEEE--
T ss_pred ccccceEEEeCCCCCce---EeecCCCCCceeeEEECCCCCE-EEEe--CCeEE----EEECC----------CCcCc--
Confidence 3678888775431 2222222 2366888888764 3333 33332 22221 11111
Q ss_pred eeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 372 TPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 372 t~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
..+.....+.+++|+||| +.|++++.++.|.+|+..+.
T Consensus 274 --------------~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 274 --------------KRVPLPHSYYSVNVSTDG--STVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp --------------EEEECSSCCCEEEECTTS--CEEEEESBSSEEEEEETTTC
T ss_pred --------------ceecCCCceeeEEECCCC--CEEEEEcCCCcEEEEECcCC
Confidence 112233456789999999 88888888999999999764
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=4.8e-16 Score=180.38 Aligned_cols=209 Identities=11% Similarity=0.034 Sum_probs=139.1
Q ss_pred EEEccCCCEEEEEEC-CCc--EEEEECCCCeEEEee-eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecc
Q 000992 81 FDYLMEKEALIVGTS-SGL--LLLHSVDGNATEVVG-RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE 156 (1196)
Q Consensus 81 v~~spd~~~La~as~-dG~--I~lw~~~~~~~e~vg-~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~ 156 (1196)
.+|||||+.|++++. +|+ |.+||..+++...+. .+...+.+++|||||+.||+++.+++|.+|+...... ..+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~--~~~~ 118 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE--NVVY 118 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE--EEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc--eeee
Confidence 689999999999998 774 888899988776433 2333444678999999999999999998886432111 1111
Q ss_pred cccCccccccCccccCCCCeEEEEE--ccCCceEEEeeccccc----------------cCCCCEEEEEECCCCcEEEEe
Q 000992 157 ELAEGFDVHEPELSSSFSFKSPISW--RGDGKYFATLSEFCNS----------------SKLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~v~~isW--spDG~~lAsvss~d~~----------------~~~d~~irVWd~~~G~l~~~~ 218 (1196)
.. +...+....| +|||++++ ....+.. ...+..|.+||..+|+.....
T Consensus 119 ~~-------------~~~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 119 QV-------------PAEWVGYGTWVANSDCTKLV-GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL 184 (388)
T ss_dssp EC-------------CTTEEEEEEEEECTTSSEEE-EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred ec-------------hhhcccccceeECCCCCeec-cccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence 11 1122333444 89999987 3211100 013478999999888776654
Q ss_pred ccCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCC-CcEEEEEEccCCCeeEEEEccCCc
Q 000992 219 ELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQID-STVELLKWNCMSDLLAAVVRFEEY 296 (1196)
Q Consensus 219 e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~-~~V~~laWSpDg~~LAs~~~d~~~ 296 (1196)
. +...+..++||| ||+.||.++..........|.+++.+|.... .+..... ..+..++|||||+.||..+.....
T Consensus 185 ~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (388)
T 3pe7_A 185 Q-ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR--KVKTHAEGESCTHEFWVPDGSALVYVSYLKGS 261 (388)
T ss_dssp E-ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE--ESCCCCTTEEEEEEEECTTSSCEEEEEEETTC
T ss_pred c-CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE--EeeeCCCCcccccceECCCCCEEEEEecCCCC
Confidence 4 456678999999 9999998876421112347888887664332 2222221 357889999999999887765322
Q ss_pred c--eEEEEEecCCE
Q 000992 297 D--SVKICFFSNNH 308 (1196)
Q Consensus 297 ~--~V~lW~~~n~~ 308 (1196)
. .|.+|++.+..
T Consensus 262 ~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 262 PDRFIYSADPETLE 275 (388)
T ss_dssp CCEEEEEECTTTCC
T ss_pred CcceEEEEecCCCc
Confidence 2 49999988765
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.69 E-value=3.1e-14 Score=164.15 Aligned_cols=283 Identities=11% Similarity=0.059 Sum_probs=168.1
Q ss_pred CCEEEEEe----CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC----CcEEEEE
Q 000992 32 QNRLFFAS----SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS----GLLLLHS 103 (1196)
Q Consensus 32 ~~~l~~~s----~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d----G~I~lw~ 103 (1196)
.-.+|+++ .++.|+.|.+ ....++.... ... ....+..++|+|||+.|++++.+ |.|.+|+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~--d~~~g~~~~~------~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~ 81 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRF--NEETGESLPL------SDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFA 81 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEE--ETTTCCEEEE------EEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEE--eCCCCCEEEe------ecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEE
Confidence 34566663 3557888877 3322222211 101 13467789999999999999986 8999998
Q ss_pred CCC--CeEEEeeee---cCcEEEEEECCCCCEEEEEe-CCceEEEEeccCc-eeeeeecc-cccCccccccCccccCCCC
Q 000992 104 VDG--NATEVVGRV---EGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWD-LLYENPLE-ELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 104 ~~~--~~~e~vg~~---~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d-~~~~~~l~-~~~~~~~Vs~tqf~~~~~~ 175 (1196)
.+. +.+..+... ......++| ||+.|++++ .+++|.+|...-+ .+...... ......+. ..+.+...
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~---~~~~~~~~ 156 (361)
T 3scy_A 82 FDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPD---KERQTMPH 156 (361)
T ss_dssp EETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSC---TTTCSSCC
T ss_pred EeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCC---ccccCCCc
Confidence 754 666544332 345677777 999888887 5789999864311 11111000 00000000 00011234
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCC--C----c-EE------EEeccCCCceeEEEEcCCCCeEEEEec
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS--G----T-LQ------ASSELKAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~--G----~-l~------~~~e~~~~~v~slawsPdG~~IAs~s~ 242 (1196)
+..++|+|||++++ ++.. ++..|++|+.+. | + +. ....+.......++|+|||++++++..
T Consensus 157 ~~~~~~spdg~~l~-~~~~-----~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 157 LHCVRITPDGKYLL-ADDL-----GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp EEEEEECTTSSEEE-EEET-----TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCCCEEE-EEeC-----CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 57899999999887 4442 467999997642 2 2 32 112223344589999999998888774
Q ss_pred CCCCCCCCeEEEEeCC-CeeEEEEEecc--CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec--CCEEEEEEEEEE
Q 000992 243 RKSENKCPSIVFYERN-GLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS--NNHWYLKYEIRY 317 (1196)
Q Consensus 243 d~~~~~~~~V~~~e~n-Gl~~~~f~l~~--~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~--n~~wylkq~l~~ 317 (1196)
. ...|.+|+.+ |.......+.. .+...+..++|||||+.|+++..+. .++|++|++. +..+.....+..
T Consensus 231 ~-----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~-~~~i~v~~~~~~~g~~~~~~~~~~ 304 (361)
T 3scy_A 231 I-----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK-ADGVAIFKVDETNGTLTKVGYQLT 304 (361)
T ss_dssp T-----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS-SCEEEEEEECTTTCCEEEEEEEEC
T ss_pred C-----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC-CCEEEEEEEcCCCCcEEEeeEecC
Confidence 3 3579999864 43221112221 1123578999999999998777650 1289999995 444433333332
Q ss_pred ecCCcEEEEEccCCCceEEEEe-cCCcE
Q 000992 318 LRRDGIRFMWHPTKPLQLICWT-LDGQI 344 (1196)
Q Consensus 318 ~~~~~~~v~Wsp~~~~~L~~~~-~~g~~ 344 (1196)
...+..+.|+|++.. |.+.. .++.+
T Consensus 305 -g~~~~~~~~spdg~~-l~~~~~~~~~v 330 (361)
T 3scy_A 305 -GIHPRNFIITPNGKY-LLVACRDTNVI 330 (361)
T ss_dssp -SSCCCEEEECTTSCE-EEEEETTTTEE
T ss_pred -CCCCceEEECCCCCE-EEEEECCCCCE
Confidence 223377999999875 55555 34444
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.67 E-value=1e-14 Score=169.37 Aligned_cols=252 Identities=13% Similarity=0.021 Sum_probs=161.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccc-cccccceeeccccccccccCCCCCCEEEEEEccCCCE--EEEEE----
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSF-QNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEA--LIVGT---- 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~--La~as---- 94 (1196)
.+..+++++++..||+++.+ .|..|++ . .++.. .+. .++. .+.+..++|+|||+. ++++.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~--~~~g~~~-~~~-------~~~~--~g~~~~~~~spdg~~l~~~~~~~~~~ 107 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAV--KSPTEIV-HEA-------SHPI--GGHPRANDADTNTRAIFLLAAKQPPY 107 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEE--EETTEEE-EEE-------EEEC--CSSGGGGCTTSCCEEEEEEECSSTTC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEE--CCCCCEE-Eee-------Eeec--CCCCccEEECCCCCEEEEEEecCCcc
Confidence 57789999999999999888 7999998 3 33221 111 1110 123456889999995 44442
Q ss_pred ---------CCCcEEEEECCC-CeEE-Eeee----ecCcEEEEEECCCCCEEEEEe-CCceEEEEecc--Cceeeeeecc
Q 000992 95 ---------SSGLLLLHSVDG-NATE-VVGR----VEGGVRFISPSPDGDLLGVTT-GFGQILVMTHD--WDLLYENPLE 156 (1196)
Q Consensus 95 ---------~dG~I~lw~~~~-~~~e-~vg~----~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~--~d~~~~~~l~ 156 (1196)
.+|++.+|+.+. +++. .+.. +...+.+++|||||++|+++. ++++|.+|+.. ........+.
T Consensus 108 ~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 187 (365)
T 1jof_A 108 AVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD 187 (365)
T ss_dssp CEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred eeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe
Confidence 689999999863 4432 3321 245799999999999988775 46789888643 2211000110
Q ss_pred cccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CCcEEE---Eec--c-----CCC-
Q 000992 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQA---SSE--L-----KAF- 223 (1196)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G~l~~---~~e--~-----~~~- 223 (1196)
+..+......++|+|||++++ ++.. .+++|++|+.+ +|++.. ... + +.+
T Consensus 188 ------------~~~~g~~p~~~~~spdg~~l~-v~~~-----~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~ 249 (365)
T 1jof_A 188 ------------APDPGDHPRWVAMHPTGNYLY-ALME-----AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPE 249 (365)
T ss_dssp ------------CSSTTCCEEEEEECTTSSEEE-EEET-----TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTT
T ss_pred ------------cCCCCCCCCEeEECCCCCEEE-EEEC-----CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccc
Confidence 001124568899999999988 5542 35799999753 677632 111 1 111
Q ss_pred -----ceeEEE-EcCCCCeEEEEecCCCCCCCCeEEEEeC--CCeeEEEEE-eccCCCCcEEEEEEcc---CCCeeEEEE
Q 000992 224 -----MGAVLE-WMPSGANIAAVYDRKSENKCPSIVFYER--NGLERSSFD-INEQIDSTVELLKWNC---MSDLLAAVV 291 (1196)
Q Consensus 224 -----~v~sla-wsPdG~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~~f~-l~~~~~~~V~~laWSp---Dg~~LAs~~ 291 (1196)
....++ |+|||++|+++.+..+......|.+|+. +|....... +..+ ...+..++||| ||++|+++.
T Consensus 250 ~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 250 TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEEC
T ss_pred cccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC-CCCcccceecCCCcCCCEEEEEE
Confidence 468899 9999999887765421001127999985 454432111 2211 22456899999 899999998
Q ss_pred ccCCcceEEEEEecCC
Q 000992 292 RFEEYDSVKICFFSNN 307 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~ 307 (1196)
.+. ++|++|++...
T Consensus 329 ~~~--~~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQE--GWLEIYRWKDE 342 (365)
T ss_dssp SSS--CEEEEEEEETT
T ss_pred cCC--CeEEEEEEchh
Confidence 752 28999998764
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.66 E-value=1.5e-14 Score=167.67 Aligned_cols=284 Identities=12% Similarity=0.029 Sum_probs=165.7
Q ss_pred EeeecCCCEEEEEeC-CC--cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 26 SALDIEQNRLFFASS-AN--NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s~-~~--~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
.+|.+|+..|++++. ++ +|+.|++ .+++.. .+ ... +...+.++.|||||+.|++++.+++|.+|
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~--~~g~~~-~l-------t~~---~~~~~~~~~~spdg~~l~~~~~~~~l~~~ 107 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDL--NTQVAT-QL-------TEG---RGDNTFGGFLSPDDDALFYVKDGRNLMRV 107 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEET--TTCEEE-EC-------CCS---SCBCSSSCEECTTSSEEEEEETTTEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeC--CCCceE-Ee-------eeC---CCCCccceEEcCCCCEEEEEeCCCeEEEE
Confidence 679999999999987 45 4899998 444431 11 111 11233356899999999999999999999
Q ss_pred ECCCCeEE-EeeeecCcEEEEEE--CCCCCEEEEEe----------------------CCceEEEEeccCceeeeeeccc
Q 000992 103 SVDGNATE-VVGRVEGGVRFISP--SPDGDLLGVTT----------------------GFGQILVMTHDWDLLYENPLEE 157 (1196)
Q Consensus 103 ~~~~~~~e-~vg~~~~~I~~~aw--SPDg~~LA~~s----------------------~d~tV~l~~~~~d~~~~~~l~~ 157 (1196)
|+.+++.. +...+.+.+....| ||||+.|+... .+..|.+|+....... .+.
T Consensus 108 d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~--~l~- 184 (388)
T 3pe7_A 108 DLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST--VIL- 184 (388)
T ss_dssp ETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE--EEE-
T ss_pred ECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE--Eee-
Confidence 99998765 33333344544444 99999998543 2244555442211111 111
Q ss_pred ccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC-CceeEEEEcCCCC
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSGA 235 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~-~~v~slawsPdG~ 235 (1196)
.+...+..++||| ||+.||+++. .+.......|.+||..+++......... ..+..++|||||+
T Consensus 185 -------------~~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 185 -------------QENQWLGHPIYRPYDDSTVAFCHE-GPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp -------------EESSCEEEEEEETTEEEEEEEEEC-SCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSS
T ss_pred -------------cCCccccccEECCCCCCEEEEEEe-cCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCC
Confidence 1224568899999 9999984332 2110114578888985555444333332 2467889999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEE-EeccCCC--CcEEEEEEccCCCeeEEEEcc------CCcceEEEEEecC
Q 000992 236 NIAAVYDRKSENKCPSIVFYERNGLERSSF-DINEQID--STVELLKWNCMSDLLAAVVRF------EEYDSVKICFFSN 306 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f-~l~~~~~--~~V~~laWSpDg~~LAs~~~d------~~~~~V~lW~~~n 306 (1196)
.||..+.... .....|.+|+..+.....+ .++.... .....++|||||+.||....+ .....|.+|+..+
T Consensus 251 ~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 251 ALVYVSYLKG-SPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp CEEEEEEETT-CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred EEEEEecCCC-CCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 9988765422 0112488999754332221 1221000 001124799999999976543 1223799999987
Q ss_pred CEEEEEEEEEEecC-----------CcEEEEEccCCCceEEEEe-cCCcE
Q 000992 307 NHWYLKYEIRYLRR-----------DGIRFMWHPTKPLQLICWT-LDGQI 344 (1196)
Q Consensus 307 ~~wylkq~l~~~~~-----------~~~~v~Wsp~~~~~L~~~~-~~g~~ 344 (1196)
... ..+..+.. ....+.|+|++.. |.+.+ .+|..
T Consensus 330 ~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~-l~~~s~~~g~~ 375 (388)
T 3pe7_A 330 GTQ---HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ-ILFTSDVHGKP 375 (388)
T ss_dssp TEE---EEEEECCCCCCCBTTBSSTTCCCCEECTTSSE-EEEEECTTSSC
T ss_pred Cce---EEeccccCcccccccccccCCCCccCCCCCCE-EEEEecCCCce
Confidence 642 23333322 1356789999875 44333 34443
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.66 E-value=1.3e-14 Score=164.85 Aligned_cols=233 Identities=12% Similarity=-0.010 Sum_probs=155.9
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcEEEEE
Q 000992 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLLLLHS 103 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I~lw~ 103 (1196)
+.++..++..+++++.++.|+.||. .+++....+ + ......+..++|+|||+.++++ ..+|+|.+||
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~--~~~~~~~~~---~-------~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d 71 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDV--ASDTVYKSC---V-------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID 71 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEET--TTTEEEEEE---E-------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEEC--CCCcEEEEE---e-------cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEe
Confidence 3456666666677788999999998 554431111 1 1001247789999999976554 4689999999
Q ss_pred CCCCeEE-Eee-ee-----cCcEEEEEECCCCCEEEEEeCC------------ceEEEEecc-CceeeeeecccccCccc
Q 000992 104 VDGNATE-VVG-RV-----EGGVRFISPSPDGDLLGVTTGF------------GQILVMTHD-WDLLYENPLEELAEGFD 163 (1196)
Q Consensus 104 ~~~~~~e-~vg-~~-----~~~I~~~awSPDg~~LA~~s~d------------~tV~l~~~~-~d~~~~~~l~~~~~~~~ 163 (1196)
..+++.. .+. .+ ...+.+++|||||++|++++.+ ++|.+|+.. ..........
T Consensus 72 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------- 144 (349)
T 1jmx_B 72 LDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF------- 144 (349)
T ss_dssp TTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-------
T ss_pred CCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-------
Confidence 9987653 222 11 1237889999999999999865 789888632 1111111000
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC---------------------
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA--------------------- 222 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~--------------------- 222 (1196)
.+...+.+++|+|||+.++ ++ +.|++||..+|+.........
T Consensus 145 -------~~~~~~~~~~~s~dg~l~~--~~--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (349)
T 1jmx_B 145 -------PMPRQVYLMRAADDGSLYV--AG--------PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 207 (349)
T ss_dssp -------ECCSSCCCEEECTTSCEEE--ES--------SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTT
T ss_pred -------cCCCcccceeECCCCcEEE--cc--------CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcc
Confidence 1122467899999999444 32 239999998888776653221
Q ss_pred -----------------------------------------------CceeEEEEcC-CCCeEEEEecCCCCCCCCeEEE
Q 000992 223 -----------------------------------------------FMGAVLEWMP-SGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 223 -----------------------------------------------~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
....+++|+| ||++++++ . ..|.+
T Consensus 208 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~-------~~v~~ 279 (349)
T 1jmx_B 208 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-L-------NRLAK 279 (349)
T ss_dssp CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-E-------SEEEE
T ss_pred eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-c-------CeEEE
Confidence 1235678889 99999988 2 36999
Q ss_pred EeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 255 YERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 255 ~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|+.. |.....+ .. ...+..++|||||+.|++++.++ .|++|+..+..
T Consensus 280 ~d~~~~~~~~~~--~~--~~~~~~~~~s~dg~~l~~~~~~~---~v~v~d~~~~~ 327 (349)
T 1jmx_B 280 YDLKQRKLIKAA--NL--DHTYYCVAFDKKGDKLYLGGTFN---DLAVFNPDTLE 327 (349)
T ss_dssp EETTTTEEEEEE--EC--SSCCCEEEECSSSSCEEEESBSS---EEEEEETTTTE
T ss_pred EECccCeEEEEE--cC--CCCccceEECCCCCEEEEecCCC---eEEEEeccccc
Confidence 9965 3333322 21 23477999999999999977676 89999998764
No 164
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.64 E-value=1.2e-14 Score=179.43 Aligned_cols=235 Identities=12% Similarity=0.012 Sum_probs=157.2
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC---CC
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS---SG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~---dG 97 (1196)
.+..+++.+|+..|++++. ++.+..|++ ..++.. + +..+. ...+.+++|||| +.+++++. ++
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~--~~g~~~-~-------lt~~~---~~~~~~~~~spd-~~l~~~~~~~g~~ 88 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLY--DGGETV-K-------LNREP---INSVLDPHYGVG-RVILVRDVSKGAE 88 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEE--ETTEEE-E-------CCSSC---CSEECEECTTCS-EEEEEEECSTTSC
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEE--cCCCcE-e-------eeccc---ccccccccCCCC-eEEEEeccCCCCc
Confidence 6888999999999999987 888888987 444321 1 22221 246899999999 77777765 34
Q ss_pred cEEE--EEC--CCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 98 LLLL--HSV--DGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 98 ~I~l--w~~--~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
...| ++. .++... +.. ..++...+|||||+.++.++ .++.+.+|+....... .+...
T Consensus 89 ~~~l~~~~~~~~g~~~~-l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~--~l~~~-------------- 150 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQR-LEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR--ELARL-------------- 150 (582)
T ss_dssp CEEEEEEETTSTTCCEE-CTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE--EEEEE--------------
T ss_pred ceEEEEEeccCCCcccc-ccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE--EeecC--------------
Confidence 4555 555 444433 322 23455779999997654443 3445557753211111 11111
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.. .+++|||||+++|+ ++.+.. ..+.|++||..+|++. .+..+.+.+.+++|||||+.||++..+. ...|
T Consensus 151 ~~--~~~~~spDG~~la~-~~~~~~--~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~----~~~i 220 (582)
T 3o4h_A 151 PG--FGFVSDIRGDLIAG-LGFFGG--GRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAR----EARL 220 (582)
T ss_dssp SS--CEEEEEEETTEEEE-EEEEET--TEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSS----CEEE
T ss_pred CC--ceEEECCCCCEEEE-EEEcCC--CCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCC----eeEE
Confidence 11 78999999999994 443321 2367999998788776 4556778889999999999999666542 2479
Q ss_pred EEEeCCCeeEEEEEeccCCCCcEEEEE--------EccCCCeeEEEEccCCcceEEEEEe
Q 000992 253 VFYERNGLERSSFDINEQIDSTVELLK--------WNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~~~~~V~~la--------WSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
.+|+.++.... .+.. +...+.+++ |||||.++++++.++ +++||.+
T Consensus 221 ~~~d~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g---~~~l~~~ 274 (582)
T 3o4h_A 221 VTVDPRDGSVE--DLEL-PSKDFSSYRPTAITWLGYLPDGRLAVVARREG---RSAVFID 274 (582)
T ss_dssp EEECTTTCCEE--ECCC-SCSHHHHHCCSEEEEEEECTTSCEEEEEEETT---EEEEEET
T ss_pred EEEcCCCCcEE--EccC-CCcChhhhhhccccceeEcCCCcEEEEEEcCC---cEEEEEE
Confidence 99997654332 2332 233455566 999999999999998 9999999
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=7.8e-15 Score=170.01 Aligned_cols=240 Identities=11% Similarity=0.023 Sum_probs=146.2
Q ss_pred EEEEEEccCCCEEEEEECC-C--cEEEEECCCCeEEEeeeecCcEE-EEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 78 ITAFDYLMEKEALIVGTSS-G--LLLLHSVDGNATEVVGRVEGGVR-FISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~d-G--~I~lw~~~~~~~e~vg~~~~~I~-~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
+.+++|||||+.|+.+... | .|.+|+..+++...+......+. .++|||||+.||+++.+++|.+|+.......
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~-- 115 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ-- 115 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE--
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE--
Confidence 5667899999999887654 3 68888999887654433233333 4789999999999999999988864322111
Q ss_pred eccccc-----CccccccCccccCCCCe-----EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC
Q 000992 154 PLEELA-----EGFDVHEPELSSSFSFK-----SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1196)
Q Consensus 154 ~l~~~~-----~~~~Vs~tqf~~~~~~v-----~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~ 223 (1196)
.+.... .++.+- |.. .... ..+.|+|||++++ +...... ..+..|.+||..+|+...... +..
T Consensus 116 ~~~~~~~~~~~~g~~l~---~~~-~~~~~~~~~~~~~~spdg~~~~-~~~~~~~-~~~~~l~~~d~~~g~~~~~~~-~~~ 188 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVA---NSD-CTKLVGIEILKRDWQPLTSWEK-FAEFYHT-NPTCRLIKVDIETGELEVIHQ-DTA 188 (396)
T ss_dssp EEEECCTTEEEEEEEEE---CTT-SSEEEEEEEEGGGCCCCCSHHH-HHHHHHT-CCCEEEEEEETTTCCEEEEEE-ESS
T ss_pred EEEecccccCCCCCEEE---ecc-CCccccccccccccCCCCccee-eeeeccC-CCcceEEEEECCCCcEEeecc-CCc
Confidence 111100 000000 000 0000 0145788888776 4321000 135789999998888766553 456
Q ss_pred ceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC-CCcEEEEEEccCCCeeEEEEccCCcc--eE
Q 000992 224 MGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYD--SV 299 (1196)
Q Consensus 224 ~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~-~~~V~~laWSpDg~~LAs~~~d~~~~--~V 299 (1196)
.+..++|+| +|+.||.++.+........|.+|+.+|.... .+..+. ...+..++|||||+.|+.++.+.... .|
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR--KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE--ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee--EeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence 678999999 8998888775321111146888887654322 122211 23588899999999998887663322 49
Q ss_pred EEEEecCCEEEEEEEEEEecCCcEEEEEcc-CCCc
Q 000992 300 KICFFSNNHWYLKYEIRYLRRDGIRFMWHP-TKPL 333 (1196)
Q Consensus 300 ~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp-~~~~ 333 (1196)
.+|+..+.... .+.. .......|+| ++..
T Consensus 267 ~~~d~~~g~~~---~l~~--~~~~~~~~s~~dg~~ 296 (396)
T 3c5m_A 267 YKANPETLENE---EVMV--MPPCSHLMSNFDGSL 296 (396)
T ss_dssp EEECTTTCCEE---EEEE--CCSEEEEEECSSSSE
T ss_pred EEEECCCCCeE---Eeee--CCCCCCCccCCCCce
Confidence 99998765431 1211 1122278999 8763
No 166
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.61 E-value=4.9e-14 Score=160.03 Aligned_cols=286 Identities=12% Similarity=-0.013 Sum_probs=157.3
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecC--cEEEEEECCCCCEEEEE-eCCceEEEEec-cCceeeeee
Q 000992 80 AFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEG--GVRFISPSPDGDLLGVT-TGFGQILVMTH-DWDLLYENP 154 (1196)
Q Consensus 80 ~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~--~I~~~awSPDg~~LA~~-s~d~tV~l~~~-~~d~~~~~~ 154 (1196)
+++++++++.+++++.+|+|.+||..++++. .+.. .. .+..++|||||+.++++ +.+++|.+|+. ....+....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 4567889999999999999999999987653 3322 23 57899999999976555 46889998873 233333332
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc------cCCCCEEEEEECCCCcEE---EEeccCCCce
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS------SKLHKRLKVWERDSGTLQ---ASSELKAFMG 225 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~------~~~d~~irVWd~~~G~l~---~~~e~~~~~v 225 (1196)
...... .....+..++|+|||++++ +++.+.. ...++.|.+||..+|+.. .... +...+
T Consensus 83 ~~~~~~----------~~~~~~~~~~~spdg~~l~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~ 150 (349)
T 1jmx_B 83 LSSVPG----------EVGRSMYSFAISPDGKEVY-ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQV 150 (349)
T ss_dssp SCCSTT----------EEEECSSCEEECTTSSEEE-EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSC
T ss_pred cccccc----------cccccccceEECCCCCEEE-EEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcc
Confidence 211000 0001246899999999998 5542100 001379999998775432 2333 23346
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCC---------------------CcEEEEEEccC
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQID---------------------STVELLKWNCM 283 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~---------------------~~V~~laWSpD 283 (1196)
.+++|+|||+ +.+++. .|.+|+.. |.....+....... .....++|++|
T Consensus 151 ~~~~~s~dg~-l~~~~~--------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 221 (349)
T 1jmx_B 151 YLMRAADDGS-LYVAGP--------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 221 (349)
T ss_dssp CCEEECTTSC-EEEESS--------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred cceeECCCCc-EEEccC--------cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC
Confidence 8899999999 444432 38899864 44333222111000 03456778877
Q ss_pred CCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEcc-CCCceEEEEecCCcEEEEEEEEeeecCCCeeEE
Q 000992 284 SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHP-TKPLQLICWTLDGQITTYNFIWTTAVMENSTAL 362 (1196)
Q Consensus 284 g~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp-~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~ 362 (1196)
+.......... ..+..++..+..... ..+.........+.|+| ++.. +.+. ++.+. .|+..
T Consensus 222 ~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sp~dg~~-l~~~--~~~v~----~~d~~-------- 283 (349)
T 1jmx_B 222 DKQDPATADLL--YGYLSVDLKTGKTHT-QEFADLTELYFTGLRSPKDPNQ-IYGV--LNRLA----KYDLK-------- 283 (349)
T ss_dssp -----CCCEEE--EEEEEEETTTCCEEE-EEEEECSSCEEEEEECSSCTTE-EEEE--ESEEE----EEETT--------
T ss_pred CcCCccccccc--eeEEEEeccCCcEEe-cccccCCCcceeeEecCCCCCE-EEEE--cCeEE----EEECc--------
Confidence 64321110000 011123332221100 01111111226678888 7654 4333 33332 22221
Q ss_pred EEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 363 VIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 363 viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
.++.+ ..+.....+.+++|+||| +.|++++.+++|.+|+..+.
T Consensus 284 --~~~~~----------------~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 284 --QRKLI----------------KAANLDHTYYCVAFDKKG--DKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp --TTEEE----------------EEEECSSCCCEEEECSSS--SCEEEESBSSEEEEEETTTT
T ss_pred --cCeEE----------------EEEcCCCCccceEECCCC--CEEEEecCCCeEEEEecccc
Confidence 11111 122233456789999999 78888888999999999764
No 167
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.60 E-value=1.7e-14 Score=172.17 Aligned_cols=208 Identities=10% Similarity=0.045 Sum_probs=142.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccc-----cccceeeccccccccccCCCCCCEEEEEEccCCCEEE----E
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQN-----ERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI----V 92 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La----~ 92 (1196)
.+..+++.+++..+++++.++ +..|+...... .....+..... ...++. .+.|.+++|+|||+.|+ +
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQ-GLLVPM--KFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCC-CEEECC--SSCEEEEEECTTSCEEEEEEEE
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCc-cccccC--CCcccEEEEcCCCCEEEEEEec
Confidence 678899999999999998887 77776521000 00000000000 000111 35799999999999999 6
Q ss_pred EECCCcEEEEECCCC------------eEEEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEecc-Cceeeeeecccc
Q 000992 93 GTSSGLLLLHSVDGN------------ATEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDLLYENPLEEL 158 (1196)
Q Consensus 93 as~dG~I~lw~~~~~------------~~e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~ 158 (1196)
++.||+|++||..++ .+.....|.+.|.+++|||+ +++||+++.||+|++|+.. ...+...
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~----- 188 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT----- 188 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE-----
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec-----
Confidence 788999999998643 13344446889999999998 8999999999999998632 2111111
Q ss_pred cCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-------CCceeEEEEc
Q 000992 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-------AFMGAVLEWM 231 (1196)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-------~~~v~slaws 231 (1196)
.+|...+.+++|+|||++|| +++ .|++|+|||. .|+...+...+ ...+.+++|+
T Consensus 189 -----------~~~~~~v~~v~wspdg~~la-sgs------~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 189 -----------LPSTVAVTSVCWSPKGKQLA-VGK------QNGTVVQYLP-TLQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp -----------ECGGGCEEEEEECTTSSCEE-EEE------TTSCEEEECT-TCCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred -----------cCCCCceeEEEEcCCCCEEE-EEc------CCCcEEEEcc-CCcccccccCCcccCCCCceeEEEEEEe
Confidence 13445789999999999999 676 4689999999 47766655433 2368999999
Q ss_pred CCCCeEEEEecCCC-CCCCCeEEEEeC
Q 000992 232 PSGANIAAVYDRKS-ENKCPSIVFYER 257 (1196)
Q Consensus 232 PdG~~IAs~s~d~~-~~~~~~V~~~e~ 257 (1196)
|++.++++.+...+ -+....+.+|+.
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred cCceEEEEEccCCCccCCCCceEEEEe
Confidence 99998876553211 112345888874
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.58 E-value=1.5e-12 Score=144.86 Aligned_cols=244 Identities=9% Similarity=0.025 Sum_probs=168.0
Q ss_pred ceeEEeeecCCCEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEE-ccCCCEEEEEEC-CCc
Q 000992 22 ILQFSALDIEQNRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDY-LMEKEALIVGTS-SGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~-spd~~~La~as~-dG~ 98 (1196)
.+.++++|+++. +|++ +.++.|..|+. ..+.. ..+ +.. +........+.++++ .++++.+++... ++.
T Consensus 31 ~p~~v~~~~~g~-l~v~~~~~~~i~~~d~--~g~~~-~~~---~~~--~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 31 EPSGVAVNAQND-IIVADTNNHRIQIFDK--EGRFK-FQF---GEC--GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp CEEEEEECTTCC-EEEEEGGGTEEEEECT--TSCEE-EEE---CCB--SSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CCceEEECCCCC-EEEEECCCCEEEEECC--CCcEE-EEe---ccc--CCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 678899999987 5555 66778999998 32211 111 100 000000146899999 477776666543 889
Q ss_pred EEEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 99 LLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
|.+|+.++..+...+. ....+.+++++|||+++++.+.++.|.+|+.+...+...... ++.....
T Consensus 102 i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--------------~~~~~p~ 167 (286)
T 1q7f_A 102 IQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS--------------KHLEFPN 167 (286)
T ss_dssp EEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT--------------TTCSSEE
T ss_pred EEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCC--------------CccCCcE
Confidence 9999977665554432 235689999999999888878888999987655444332211 1113458
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC--CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK--AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~--~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
.|+++|||++++ +.+ .++.|++||. +|+...+.... ......|+++|+|+++++...+. ..|.+|
T Consensus 168 ~i~~~~~g~l~v-~~~------~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~-----~~i~~~ 234 (286)
T 1q7f_A 168 GVVVNDKQEIFI-SDN------RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN-----FNLTIF 234 (286)
T ss_dssp EEEECSSSEEEE-EEG------GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS-----CEEEEE
T ss_pred EEEECCCCCEEE-EEC------CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC-----EEEEEE
Confidence 999999999877 443 3579999999 88877766432 24568999999999888876531 279999
Q ss_pred eCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 256 ERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 256 e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
+.+|.....+..... ...+.+++|+|||+++++ +.++ +|++|+...
T Consensus 235 ~~~g~~~~~~~~~~~-~~~~~~i~~~~~g~l~vs-~~~~---~v~v~~~~~ 280 (286)
T 1q7f_A 235 TQDGQLISALESKVK-HAQCFDVALMDDGSVVLA-SKDY---RLYIYRYVQ 280 (286)
T ss_dssp CTTSCEEEEEEESSC-CSCEEEEEEETTTEEEEE-ETTT---EEEEEECSC
T ss_pred CCCCCEEEEEcccCC-CCcceeEEECCCCcEEEE-CCCC---eEEEEEccc
Confidence 999876655543321 235789999999997777 5666 899998754
No 169
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.54 E-value=4.7e-12 Score=144.46 Aligned_cols=247 Identities=12% Similarity=0.056 Sum_probs=152.5
Q ss_pred ceeEEeeecCCCEEEEEeC---------CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE
Q 000992 22 ILQFSALDIEQNRLFFASS---------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV 92 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~ 92 (1196)
.+...++ |+..|+++.. ++.|+.|++ ..++. . . + ..+.++.|||||+.|+.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~--~~~~~--~--~----l--------~~~~~~~~SpDg~~la~ 75 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENL--KNNAR--R--F----I--------ENATMPRISPDGKKIAF 75 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEET--TTCCE--E--E----E--------ESCEEEEECTTSSEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeC--CCCce--E--E----c--------ccCCCeEECCCCCEEEE
Confidence 4566677 7888877631 446888888 44332 1 1 1 25788999999999998
Q ss_pred EECC---C--cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC---------------------------ceE
Q 000992 93 GTSS---G--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF---------------------------GQI 140 (1196)
Q Consensus 93 as~d---G--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d---------------------------~tV 140 (1196)
++.+ | .|.+|+..+++...+..+.. +.+++|||||+.||+++.+ ..|
T Consensus 76 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 76 MRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred EEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence 8764 3 37788998887654433344 9999999999999998743 345
Q ss_pred EEEeccCcee-eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccC--C-CCEEEEEECCCCcEEE
Q 000992 141 LVMTHDWDLL-YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSK--L-HKRLKVWERDSGTLQA 216 (1196)
Q Consensus 141 ~l~~~~~d~~-~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~--~-d~~irVWd~~~G~l~~ 216 (1196)
.+|+...... .... . . .+..++|+||| +++ ++..++... . ...|.++| +|+...
T Consensus 155 ~~~d~~~~~~~~~l~----------------~-~-~~~~~~~spdg-~~~-~~~~~~~~~~~~~~~~l~~~d--~~~~~~ 212 (347)
T 2gop_A 155 WIFDTESEEVIEEFE----------------K-P-RFSSGIWHRDK-IVV-NVPHREIIPQYFKFWDIYIWE--DGKEEK 212 (347)
T ss_dssp EEEETTTTEEEEEEE----------------E-E-TTCEEEEETTE-EEE-EEECCCSSCCSSCCEEEEEEE--TTEEEE
T ss_pred EEEECCCCeEEeeec----------------C-C-CcccccCCCCe-EEE-EEecccccccccccccEEEeC--CCceEE
Confidence 5554221111 1111 1 1 34789999999 655 454321100 0 23455555 676655
Q ss_pred EeccCCCceeEEEEcCCCCeEEEEecCCC--CCCCCeEEEEeCCCeeEEEEEeccCCCCcEEE-EEEccCCCeeEEEEcc
Q 000992 217 SSELKAFMGAVLEWMPSGANIAAVYDRKS--ENKCPSIVFYERNGLERSSFDINEQIDSTVEL-LKWNCMSDLLAAVVRF 293 (1196)
Q Consensus 217 ~~e~~~~~v~slawsPdG~~IAs~s~d~~--~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~-laWSpDg~~LAs~~~d 293 (1196)
...+ +.+. ++||||+.||.++.+.. ......|.+|+ +|... .+...+...+.. ++|| || ++++++.+
T Consensus 213 l~~~--~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~---~l~~~~~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 213 MFEK--VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVM---GILDEVDRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp EEEE--ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEE---ESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred eccC--ccee--eECCCCCEEEEEEccccCCccccceEEEEC-CCceE---eccccCCcccCCccEEc-Cc-EEEEEecC
Confidence 4443 3333 45999999998875431 01135788888 55432 232223456876 9999 99 99999988
Q ss_pred CCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEcc
Q 000992 294 EEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHP 329 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp 329 (1196)
+ .++|| +.+... ..+. ..... ..+.|+|
T Consensus 283 ~---~~~l~-~~~g~~---~~~~-~~~~~v~~~~~s~ 311 (347)
T 2gop_A 283 G---SVNLY-IWDGEI---KPIA-KGRHWIMGFDVDE 311 (347)
T ss_dssp T---EEEEE-EESSSE---EEEE-CSSSEEEEEEESS
T ss_pred C---cEEEE-EcCCce---EEEe-cCCCeEEeeeeeC
Confidence 8 89999 875432 1221 11222 6788998
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.54 E-value=2e-13 Score=158.11 Aligned_cols=276 Identities=11% Similarity=0.002 Sum_probs=161.5
Q ss_pred eeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEE-EEEEccCCCEEEEEECCCc
Q 000992 23 LQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSIT-AFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~-~v~~spd~~~La~as~dG~ 98 (1196)
+...+|.+|+..|++++.. ..|+.|++ ..++.. . +... ...+. .+.|||||+.|+.++.+++
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~--~~~~~~-~-------l~~~----~~~~~~~~~~spdg~~l~~~~~~~~ 103 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNL--ETQQAV-Q-------LTEG----KGDNTFGGFISTDERAFFYVKNELN 103 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEET--TTTEEE-E-------CCCS----SCBCTTTCEECTTSSEEEEEETTTE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEEC--CCCcEE-E-------eecC----CCCccccceECCCCCEEEEEEcCCc
Confidence 5567899999998887553 36888888 444321 1 1111 11222 3679999999999999999
Q ss_pred EEEEECCCCeEEEeee-ecCcEEE-------------------EEECCCCCEEEEEe-----CCceEEEEeccCceeeee
Q 000992 99 LLLHSVDGNATEVVGR-VEGGVRF-------------------ISPSPDGDLLGVTT-----GFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg~-~~~~I~~-------------------~awSPDg~~LA~~s-----~d~tV~l~~~~~d~~~~~ 153 (1196)
|.+|+..+++...+.. +.+.... ++|||||+.++++. .+..|.+|+..-......
T Consensus 104 l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~ 183 (396)
T 3c5m_A 104 LMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI 183 (396)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred EEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence 9999999876653332 2222222 35677777666542 444565554221111111
Q ss_pred ecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-CCceeEEEEc
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-AFMGAVLEWM 231 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-~~~v~slaws 231 (1196)
. .+...+..+.|+| ||+.|++++. ++.......|.+|+..+++........ ...+..++|+
T Consensus 184 ~----------------~~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (396)
T 3c5m_A 184 H----------------QDTAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWI 246 (396)
T ss_dssp E----------------EESSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEEC
T ss_pred c----------------cCCcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeeccCCCccccceEEC
Confidence 0 1224568899999 8998884332 110001157899998555544443322 2246789999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccC-------------Ccc
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFE-------------EYD 297 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~-------------~~~ 297 (1196)
|||+.||.++.+.. .....|.+|+..+....... ..+ ... ++||| ||++|+++..+. ...
T Consensus 247 pdg~~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~-~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 247 PDGSAMAYVSYFKG-QTDRVIYKANPETLENEEVM-VMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp TTSSCEEEEEEETT-TCCEEEEEECTTTCCEEEEE-ECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred CCCCEEEEEecCCC-CccceEEEEECCCCCeEEee-eCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence 99999888765422 01133999996533222111 111 133 89999 999998865321 113
Q ss_pred eEEEEEecCCEEEEEEEEEEecCC-----------cEEEEEccCCCceEEEEe
Q 000992 298 SVKICFFSNNHWYLKYEIRYLRRD-----------GIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 298 ~V~lW~~~n~~wylkq~l~~~~~~-----------~~~v~Wsp~~~~~L~~~~ 339 (1196)
.|.+|+..+... ..+..+... .....|+|++.. |...+
T Consensus 321 ~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~s 369 (396)
T 3c5m_A 321 FLYVLNTKAKSA---QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDG-VLFTS 369 (396)
T ss_dssp EEEEEETTTTBC---CEEEECCCCCCCBTTBSSTTCCCCEECTTSSE-EEEEE
T ss_pred cEEEEecccCce---EEccCCCCccccccccccCCCCCceEccCCCe-EEEEe
Confidence 799999876543 123322211 244689998865 44433
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.53 E-value=2.3e-12 Score=147.05 Aligned_cols=270 Identities=12% Similarity=0.072 Sum_probs=158.4
Q ss_pred CCEEEEEEccCCCEEEEEE---------CCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC---ce--EE
Q 000992 76 DSITAFDYLMEKEALIVGT---------SSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF---GQ--IL 141 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as---------~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d---~t--V~ 141 (1196)
..+.+.++ ||+.|+... .+++|.+|+..+++...+ ..+.+++|||||+.||+++.+ +. |.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 45778888 999998763 267799999998876544 457899999999999998754 34 44
Q ss_pred EEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc-c--------------------cCC
Q 000992 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN-S--------------------SKL 200 (1196)
Q Consensus 142 l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~-~--------------------~~~ 200 (1196)
+|+..... ...+... .. +..++|+|||++|+ .++.+. . ...
T Consensus 89 ~~~~~~g~--~~~l~~~--------------~~-~~~~~wspdg~~l~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 89 VADLETLS--SKKILEA--------------KN-IRSLEWNEDSRKLL-IVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EEETTTTE--EEEEEEE--------------SE-EEEEEECTTSSEEE-EEEECCCC---------CCCC---------C
T ss_pred EEECCCCc--eEEEEcC--------------CC-ccceeECCCCCEEE-EEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 44322111 1111111 12 68899999999999 443210 0 001
Q ss_pred CCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCC--C-CCeEEEEeCCCeeEEEEEeccCCCCcEEE
Q 000992 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSEN--K-CPSIVFYERNGLERSSFDINEQIDSTVEL 277 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~--~-~~~V~~~e~nGl~~~~f~l~~~~~~~V~~ 277 (1196)
...|.+||..+|+....... . .+..++|+||| +++++..+.... . ...|..++ +|.... +.. + ..+..
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~---l~~-~-~~~~~ 221 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEK---MFE-K-VSFYA 221 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEE---EEE-E-ESEEE
T ss_pred cceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEE---ecc-C-cceee
Confidence 35799999978877333333 3 67899999999 777765532100 0 23555566 554322 221 1 33444
Q ss_pred EEEccCCCeeEEEEccCC-----cceEEEEEecCCEEEEEEEEEEecCCc-EE-EEEccCCCceEEEEecCCcEEEEEEE
Q 000992 278 LKWNCMSDLLAAVVRFEE-----YDSVKICFFSNNHWYLKYEIRYLRRDG-IR-FMWHPTKPLQLICWTLDGQITTYNFI 350 (1196)
Q Consensus 278 laWSpDg~~LAs~~~d~~-----~~~V~lW~~~n~~wylkq~l~~~~~~~-~~-v~Wsp~~~~~L~~~~~~g~~~~~~~~ 350 (1196)
+||||+.||.++.+.. ...|.+|+ +..+ + .+....... .. +.|+ ++ .+.+.+.+|... .
T Consensus 222 --~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~--~-~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~----l 287 (347)
T 2gop_A 222 --VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV--M-GILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVN----L 287 (347)
T ss_dssp --EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE--E-ESSTTCCSEEEEEEEET-TE--EEEEEEETTEEE----E
T ss_pred --ECCCCCEEEEEEccccCCccccceEEEEC--CCce--E-eccccCCcccCCccEEc-Cc--EEEEEecCCcEE----E
Confidence 4999999999886541 12577777 3221 1 111000112 33 6787 65 344545445332 2
Q ss_pred EeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcE-EEEeCC
Q 000992 351 WTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCL-CVVDLP 423 (1196)
Q Consensus 351 ~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v-~lw~~~ 423 (1196)
| +. +|....+ +.+...|.+++|+| . .+++++.+++. .||.++
T Consensus 288 ~-~~----------~g~~~~~----------------~~~~~~v~~~~~s~-~---~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IW----------DGEIKPI----------------AKGRHWIMGFDVDE-I---VVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EE----------SSSEEEE----------------ECSSSEEEEEEESS-S---EEEEEECSSSCCEEEEES
T ss_pred E-Ec----------CCceEEE----------------ecCCCeEEeeeeeC-c---EEEEEcCCCChHHheEeC
Confidence 2 21 1221111 12345688999999 6 77777777765 788765
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.52 E-value=1.9e-12 Score=161.82 Aligned_cols=200 Identities=10% Similarity=-0.006 Sum_probs=130.4
Q ss_pred EEEEc--cCCCE-EEEEEC-CCcEEEEECC--C-CeEEEeee-----ecCcEEEEEECCCCCEEEEEeCC----------
Q 000992 80 AFDYL--MEKEA-LIVGTS-SGLLLLHSVD--G-NATEVVGR-----VEGGVRFISPSPDGDLLGVTTGF---------- 137 (1196)
Q Consensus 80 ~v~~s--pd~~~-La~as~-dG~I~lw~~~--~-~~~e~vg~-----~~~~I~~~awSPDg~~LA~~s~d---------- 137 (1196)
++.|+ |||+. |+.++. +++|.+|+.+ + +....+.. +...+.+++|||||+.||+++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 45555 99999 887654 5667777877 4 55443333 34568899999999999999876
Q ss_pred ceEEEEeccC------ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc-c-CCCCEEEEEEC
Q 000992 138 GQILVMTHDW------DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS-S-KLHKRLKVWER 209 (1196)
Q Consensus 138 ~tV~l~~~~~------d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~-~-~~d~~irVWd~ 209 (1196)
.+|.+|+... .... .+.. .+...+..++|||||++|| .++.+.. . -....|++||.
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~--~l~~-------------~~~~~~~~~~~SpDG~~la-~~~~~~~~~~~~~~~i~~~d~ 224 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVR--ELSD-------------DAHRFVTGPRLSPDGRQAV-WLAWDHPRMPWEGTELKTARV 224 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSE--ESSC-------------SCSSEECCCEECTTSSEEE-EEEECTTCCTTTCEEEEEEEE
T ss_pred eEEEEEECCCCccccCCcee--EEEe-------------cCCCcccCceECCCCCEEE-EEECCCCCCCCCCcEEEEEEE
Confidence 4777776443 1111 1110 1123557899999999999 4442210 0 01258999999
Q ss_pred C-CC---cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCC--------cEEE
Q 000992 210 D-SG---TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDS--------TVEL 277 (1196)
Q Consensus 210 ~-~G---~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~--------~V~~ 277 (1196)
. +| +......++.+.+..++|||||++++++..+. ...|..|+..+.... .+...+.. .+..
T Consensus 225 ~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~--~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 225 TEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAAT--QLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp CTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEE--ESSCCSSBSSCCCCSTTCCS
T ss_pred CCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCcee--ecccccccccCccccccCce
Confidence 6 57 55555555667889999999999777666542 346777775332211 12111111 1567
Q ss_pred EEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 278 LKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 278 laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
++|+|||++++++.. + +++||.+.
T Consensus 299 ~~~~~~~~~~~~~~~-~---~~~l~~~d 322 (662)
T 3azo_A 299 FAPLANGLIAVVHGK-G---AAVLGILD 322 (662)
T ss_dssp EEECTTSCEEEEEBS-S---SCEEEEEE
T ss_pred EeEeCCCEEEEEEEc-C---ccEEEEEE
Confidence 999999999999988 7 78999543
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.51 E-value=4.4e-12 Score=145.08 Aligned_cols=255 Identities=9% Similarity=0.008 Sum_probs=170.0
Q ss_pred ceeEEeeecCCCEEEEEeCC------------------------CcEEEEecccccccccceeeccccccccccCCCCCC
Q 000992 22 ILQFSALDIEQNRLFFASSA------------------------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDS 77 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~------------------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 77 (1196)
.+.++++|++++.+.+.+.+ +.|+.||. .++... .. .... ....
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~--~~g~~~---~~----~~~~---~~~~ 92 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDP--NNAEIL---QS----SGKN---LFYL 92 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECT--TTCCEE---EE----ECTT---TCSS
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEEC--CCCeEE---ec----cCCC---ccCC
Confidence 78999999998766555555 25889988 444431 10 0000 1247
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCC--eEEEeee---------ecCcEEEEEECC-CCCEEEEEe-CCceEEEEe
Q 000992 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGN--ATEVVGR---------VEGGVRFISPSP-DGDLLGVTT-GFGQILVMT 144 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~dG~I~lw~~~~~--~~e~vg~---------~~~~I~~~awSP-Dg~~LA~~s-~d~tV~l~~ 144 (1196)
+.+|+++|+|+.+++.+.++.|..|+.++. .+..++. +-.....++++| +|.++++.+ .++.|.+|+
T Consensus 93 p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~ 172 (329)
T 3fvz_A 93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS 172 (329)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence 899999999998888888999999999876 3444431 123589999999 888888887 789999998
Q ss_pred ccCceeeeeecccccCccccccCccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEec--cC
Q 000992 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE--LK 221 (1196)
Q Consensus 145 ~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e--~~ 221 (1196)
.+...+.......... .... ++-.....|+++|| |.+++ +.+ .+++|++|+.++|++..+.. .+
T Consensus 173 ~~g~~~~~~~~~g~~~--~~~~----~~~~~p~gia~d~~~g~l~v-~d~------~~~~I~~~~~~~G~~~~~~~~~~~ 239 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGS--SPRP----GQFSVPHSLALVPHLDQLCV-ADR------ENGRIQCFKTDTKEFVREIKHASF 239 (329)
T ss_dssp TTSCEEEEECEECCSS--SCCT----TEESCEEEEEEETTTTEEEE-EET------TTTEEEEEETTTCCEEEEECCTTT
T ss_pred CCCCEEEEeccCCCCC--CCCC----cccCCCcEEEEECCCCEEEE-EEC------CCCEEEEEECCCCcEEEEEecccc
Confidence 7666554432211100 0000 01123578999999 77666 343 46899999996699988874 34
Q ss_pred CCceeEEEEcCCCCeEEEEecCC-CCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceE
Q 000992 222 AFMGAVLEWMPSGANIAAVYDRK-SENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSV 299 (1196)
Q Consensus 222 ~~~v~slawsPdG~~IAs~s~d~-~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V 299 (1196)
.....+++|+| |..+++.+... .......|.+|+ .+|.....+.........+..|+++|||.++++...+. .|
T Consensus 240 ~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~---~I 315 (329)
T 3fvz_A 240 GRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN---TV 315 (329)
T ss_dssp TTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC---CE
T ss_pred CCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC---EE
Confidence 45678999999 65555443211 011245788998 56655443311112234689999999998888877776 89
Q ss_pred EEEEec
Q 000992 300 KICFFS 305 (1196)
Q Consensus 300 ~lW~~~ 305 (1196)
++|+..
T Consensus 316 ~~~~~~ 321 (329)
T 3fvz_A 316 WKFTLT 321 (329)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 999875
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.51 E-value=6.8e-13 Score=165.95 Aligned_cols=220 Identities=11% Similarity=-0.023 Sum_probs=132.7
Q ss_pred CCEEEEEEccCCCEEEEE--ECCCcEEEEEC-CCCeEEEeeeecCcEE---------EEEEC--CCCCE-EEEEeC-Cce
Q 000992 76 DSITAFDYLMEKEALIVG--TSSGLLLLHSV-DGNATEVVGRVEGGVR---------FISPS--PDGDL-LGVTTG-FGQ 139 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a--s~dG~I~lw~~-~~~~~e~vg~~~~~I~---------~~awS--PDg~~-LA~~s~-d~t 139 (1196)
..|.+++|++++-.++.. +.+|+..||.. .++....+..+...|. +.+|| |||+. ||.++. +..
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~ 103 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQR 103 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCC
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCe
Confidence 578999999887666666 55889999984 4555554443344555 56676 99999 887765 445
Q ss_pred EEEEecc--C-ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc----cCCCCEEEEEECCC-
Q 000992 140 ILVMTHD--W-DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS----SKLHKRLKVWERDS- 211 (1196)
Q Consensus 140 V~l~~~~--~-d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~----~~~d~~irVWd~~~- 211 (1196)
|.+|+.. . ... ..+.... ...+...+..++|||||++|| .++.+.. .....+|++||..+
T Consensus 104 l~~~~~~~~g~~~~--~~l~~~~---------~~~~~~~~~~~~~spDg~~l~-~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 104 LYAFEPDAPGGAVP--RPLTPVS---------AVGGGLRWADPVLLPERGEVW-CMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEEECTTSTTCCCC--EECSCCC---------CSTTCEEEEEEEEETTTTEEE-EEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEEEcCCCCCCCCC--EeccCCc---------cCCCCccccCcEECCCCCEEE-EEEecccCCCCCCceeEEEEEECCCC
Confidence 5444332 1 111 1111100 000234568999999999999 4543210 01125899999966
Q ss_pred -----CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCC--CCCeEEEEeCC--CeeEEEEEeccCCCCcEEEEEEcc
Q 000992 212 -----GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSEN--KCPSIVFYERN--GLERSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 212 -----G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~--~~~~V~~~e~n--Gl~~~~f~l~~~~~~~V~~laWSp 282 (1196)
|+.....+.+...+..++|||||+.||.++.+.... ....|.+|+.+ |.......+...+...+..++|||
T Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp 251 (662)
T 3azo_A 172 AAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP 251 (662)
T ss_dssp TTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred ccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence 565544314456778899999999999888653100 12478899876 311111122222245799999999
Q ss_pred CCCeeEEEEccCCcceEEEEEecCCE
Q 000992 283 MSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 283 Dg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
||++++++..++ ...|.+|+..+..
T Consensus 252 dg~l~~~~~~~~-~~~l~~~~~~~~~ 276 (662)
T 3azo_A 252 DGSLIVATDRTG-WWNLHRVDPATGA 276 (662)
T ss_dssp TSCEEEEECTTS-SCEEEEECTTTCC
T ss_pred CCeEEEEECCCC-CeEEEEEECCCCc
Confidence 999777666554 1134444443444
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.49 E-value=1e-11 Score=157.35 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=147.2
Q ss_pred CEEEEEEccCCCEEEEEECCC-----cEEEEECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCce----------
Q 000992 77 SITAFDYLMEKEALIVGTSSG-----LLLLHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQ---------- 139 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG-----~I~lw~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~t---------- 139 (1196)
.+.+++|||||+.||.++.++ +|++||+.+++.. ..+. ..+.+++|||||+.|++++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--cccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 478999999999999887654 8999999998764 2222 23678999999999999998766
Q ss_pred ------EEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC--
Q 000992 140 ------ILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-- 211 (1196)
Q Consensus 140 ------V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-- 211 (1196)
|.+|...-.......+.... .+......++|||||++|+ +++.... ..+..|++||..+
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~-----------~~~~~~~~~~~SpDg~~l~-~~~~~~~-~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFP-----------DEPKWMGGAELSDDGRYVL-LSIREGC-DPVNRLWYCDLQQES 270 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCT-----------TCTTCEEEEEECTTSCEEE-EEEECSS-SSCCEEEEEEGGGSS
T ss_pred cCCCCEEEEEECCCCcccceEEeccC-----------CCCeEEEEEEEcCCCCEEE-EEEEccC-CCccEEEEEECcccc
Confidence 77765422111001111110 1234467999999999999 4542211 1257899999855
Q ss_pred ----C--cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee---EEEEEeccCCCCcEEEEEEcc
Q 000992 212 ----G--TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE---RSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 212 ----G--~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~---~~~f~l~~~~~~~V~~laWSp 282 (1196)
| ....... +...+.. .|+|+|+.|+..+... .....|..|+.++.. -..+ ++......+.+++|++
T Consensus 271 ~~~~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~~~~~~~~~ 345 (710)
T 2xdw_A 271 NGITGILKWVKLID-NFEGEYD-YVTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVL-VPEHEKDVLEWVACVR 345 (710)
T ss_dssp SSSCSSCCCEEEEC-SSSSCEE-EEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEE-ECCCSSCEEEEEEEET
T ss_pred cccCCccceEEeeC-CCCcEEE-EEeccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceec-cCCCCCCeEEEEEEEc
Confidence 5 3333333 3333333 5999999998877542 124678889876431 1121 2211123688899998
Q ss_pred CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 283 MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 283 Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
++.++++...++ ...|.+|+..+.. ..+.+.++......+.|+|++..
T Consensus 346 ~~~lv~~~~~~g-~~~l~~~~~~~g~--~~~~l~~~~~~v~~~~~s~d~~~ 393 (710)
T 2xdw_A 346 SNFLVLCYLHDV-KNTLQLHDLATGA--LLKIFPLEVGSVVGYSGQKKDTE 393 (710)
T ss_dssp TTEEEEEEEETT-EEEEEEEETTTCC--EEEEECCCSSEEEEEECCTTCSE
T ss_pred CCEEEEEEEECC-EEEEEEEECCCCC--EEEecCCCCceEEEEecCCCCCE
Confidence 888998888876 1135556653433 12345544222256788887754
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.46 E-value=3.9e-11 Score=133.34 Aligned_cols=232 Identities=7% Similarity=0.011 Sum_probs=158.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee------ecCcEEEEEE-CCCCCEEEEEeC-CceEEEEeccC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR------VEGGVRFISP-SPDGDLLGVTTG-FGQILVMTHDW 147 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~------~~~~I~~~aw-SPDg~~LA~~s~-d~tV~l~~~~~ 147 (1196)
..+.+|+++|+|+.+++.+.++.|.+||.++..+...+. +...+.++++ +++|+++++... ++.|.+|+.+.
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g 109 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 109 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC
Confidence 468999999999988888889999999998765554432 2246899999 688887777643 78899887665
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec--cCCCce
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE--LKAFMG 225 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e--~~~~~v 225 (1196)
..+...... +......|++.|||++++ +.+ .++.|++||. +|+...... +.....
T Consensus 110 ~~~~~~~~~---------------~~~~~~~i~~~~~g~l~v-~~~------~~~~i~~~~~-~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 110 QFVRKFGAT---------------ILQHPRGVTVDNKGRIIV-VEC------KVMRVIIFDQ-NGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp CEEEEECTT---------------TCSCEEEEEECTTSCEEE-EET------TTTEEEEECT-TSCEEEEEECTTTCSSE
T ss_pred cEEEEecCc---------------cCCCceEEEEeCCCCEEE-EEC------CCCEEEEEcC-CCCEEEEeCCCCccCCc
Confidence 544333211 113458899999999877 443 3578999998 788776653 233456
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
..|+++|+|+++++.+.+ ..|..|+.+|.....+.... ....+..|+++|||+++++...++ +.|++|+..
T Consensus 167 ~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~--~~i~~~~~~ 237 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRA------HCVKVFNYEGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNN--FNLTIFTQD 237 (286)
T ss_dssp EEEEECSSSEEEEEEGGG------TEEEEEETTCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSS--CEEEEECTT
T ss_pred EEEEECCCCCEEEEECCC------CEEEEEcCCCCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCC--EEEEEECCC
Confidence 899999999988776653 57999999886544332111 124688999999999888876541 169999965
Q ss_pred CCEEEEEEEEEEecCC--cEEEEEccCCCceEEEEecCCcE
Q 000992 306 NNHWYLKYEIRYLRRD--GIRFMWHPTKPLQLICWTLDGQI 344 (1196)
Q Consensus 306 n~~wylkq~l~~~~~~--~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1196)
... ...+..+... +..+.|+|++. |.+.+.++.+
T Consensus 238 g~~---~~~~~~~~~~~~~~~i~~~~~g~--l~vs~~~~~v 273 (286)
T 1q7f_A 238 GQL---ISALESKVKHAQCFDVALMDDGS--VVLASKDYRL 273 (286)
T ss_dssp SCE---EEEEEESSCCSCEEEEEEETTTE--EEEEETTTEE
T ss_pred CCE---EEEEcccCCCCcceeEEECCCCc--EEEECCCCeE
Confidence 421 2233332221 25678888763 3444444444
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.45 E-value=2e-11 Score=136.68 Aligned_cols=222 Identities=10% Similarity=0.003 Sum_probs=153.0
Q ss_pred ceeEEeeecCCCEEEE-EeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFF-ASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~-~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
...+.+||++++.||. .+.++.|+.|+. ..+ . .. +. .+...+.+++++|||+.+++.+.++.|.
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~--~~~-~--~~------~~----~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSD--DGQ-L--SP------EM----HPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEET--TSC-E--EE------EE----SSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEEC--CCC-e--EE------EE----CCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 5678999999995555 456778999998 443 2 11 11 1235789999999999887776678999
Q ss_pred EEECCCCeEEEe-eee----cCcEEEEEECCCCCEEEEEeC-----------------CceEEEEeccCceeeeeecccc
Q 000992 101 LHSVDGNATEVV-GRV----EGGVRFISPSPDGDLLGVTTG-----------------FGQILVMTHDWDLLYENPLEEL 158 (1196)
Q Consensus 101 lw~~~~~~~e~v-g~~----~~~I~~~awSPDg~~LA~~s~-----------------d~tV~l~~~~~d~~~~~~l~~~ 158 (1196)
+||..++++..+ ... ...+..++++|||+++++.+. .+.|..++..... ... .
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~-~--- 168 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL-SAP-I--- 168 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE-EEE-E---
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCE-EEe-e---
Confidence 999977766532 221 234678999999999887431 2344444332111 110 0
Q ss_pred cCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcE---EEEeccCCCceeEEEEcCCC
Q 000992 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTL---QASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l---~~~~e~~~~~v~slawsPdG 234 (1196)
.+......++|+|||++++ +.+ .++.|++|+.. +|.+ ...+....+....+++.|+|
T Consensus 169 ------------~~~~~~~gi~~s~dg~~lv-~~~------~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G 229 (296)
T 3e5z_A 169 ------------RDRVKPNGLAFLPSGNLLV-SDT------GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG 229 (296)
T ss_dssp ------------CCCSSEEEEEECTTSCEEE-EET------TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS
T ss_pred ------------cCCCCCccEEECCCCCEEE-EeC------CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC
Confidence 1113447899999999886 554 35799999985 6766 33333345566789999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEE-ccCCCeeEEEEccC
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKW-NCMSDLLAAVVRFE 294 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW-SpDg~~LAs~~~d~ 294 (1196)
++.++. . ..|..|+.+|.....+..+ .. +.+++| +||++.|.+++.++
T Consensus 230 ~l~v~~-~-------~~v~~~~~~g~~~~~~~~~---~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 230 LIWASA-G-------DGVHVLTPDGDELGRVLTP---QT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp CEEEEE-T-------TEEEEECTTSCEEEEEECS---SC-CCEEEEESTTSCEEEEEETTE
T ss_pred CEEEEc-C-------CeEEEECCCCCEEEEEECC---CC-ceeEEEECCCCCEEEEEcCCe
Confidence 988776 2 3699999998776654432 23 889999 69999999998876
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.44 E-value=2.5e-11 Score=137.82 Aligned_cols=278 Identities=13% Similarity=0.035 Sum_probs=174.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+..++|++++..++.++.+..+..|.. . ...+ +... ...+.+++|+|+|+.+++++.+|.|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~----~~~~----~~~~~~~~~~~~g~l~~~~~~~~~i~~ 70 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTITA---E-----PWLE----ISKK----GLQLEGLNFDRQGQLFLLDVFEGNIFK 70 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEEC---E-----EEEE----EESS----CCCEEEEEECTTSCEEEEETTTCEEEE
T ss_pred ccceeeecCCccceeEEeecccCccccc---c-----eeEE----Eecc----CccccCcEECCCCCEEEEECCCCEEEE
Confidence 4566788888888887766666666632 1 1111 1111 246789999999998888888999999
Q ss_pred EECCCCeEEEee-eecCcEEEEEECCCCCEEEEEeCC----ceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 102 HSVDGNATEVVG-RVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 102 w~~~~~~~e~vg-~~~~~I~~~awSPDg~~LA~~s~d----~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
||.+++++..+. .+...+.+++|+|||+++++...+ +.|.+|+......... +... .....+
T Consensus 71 ~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~------------~~~~~~ 137 (333)
T 2dg1_A 71 INPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI-IEDL------------STAYCI 137 (333)
T ss_dssp ECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE-ECSS------------SSCCCE
T ss_pred EeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE-EccC------------ccCCcc
Confidence 999988765332 345779999999999988877766 6787776433222111 1100 112356
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
..++|+|||++++ +...+........|..|+..++++..... .......++|+|||+.|..+... ...|..|+
T Consensus 138 ~~i~~d~~g~l~v-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~-----~~~i~~~d 210 (333)
T 2dg1_A 138 DDMVFDSKGGFYF-TDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTETT-----ANRLHRIA 210 (333)
T ss_dssp EEEEECTTSCEEE-EECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGG-----GTEEEEEE
T ss_pred cceEECCCCCEEE-EeccccccCCCceEEEEeCCCCEEEEeec-CCCcccceEECCCCCEEEEEeCC-----CCeEEEEE
Confidence 8999999999887 34311000113567777775556554332 22346889999999966555432 24788888
Q ss_pred C--CCeeEEEEE----eccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecC------CcEE
Q 000992 257 R--NGLERSSFD----INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR------DGIR 324 (1196)
Q Consensus 257 ~--nGl~~~~f~----l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~------~~~~ 324 (1196)
. +|.....+. ........+..+++++||.++++...++ .|.+|+.+.. ....+..+.. ....
T Consensus 211 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~---~v~~~d~~g~---~~~~~~~~~~~~g~~~~~~~ 284 (333)
T 2dg1_A 211 LEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG---RVLVFNKRGY---PIGQILIPGRDEGHMLRSTH 284 (333)
T ss_dssp ECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT---EEEEECTTSC---EEEEEECTTGGGTCSCBCCE
T ss_pred ecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCC---EEEEECCCCC---EEEEEEcCCCccccccCcce
Confidence 6 443221111 1111123678899999999888877666 7999998542 1233333221 2367
Q ss_pred EEEccCCCceEEEEecCC
Q 000992 325 FMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 325 v~Wsp~~~~~L~~~~~~g 342 (1196)
+.|+|++. .|.+.+.+|
T Consensus 285 ~~~~~dg~-~L~v~~~~g 301 (333)
T 2dg1_A 285 PQFIPGTN-QLIICSNDI 301 (333)
T ss_dssp EEECTTSC-EEEEEEECG
T ss_pred EEECCCCC-EEEEEeCcc
Confidence 88888864 366555443
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.39 E-value=1.1e-10 Score=132.57 Aligned_cols=231 Identities=10% Similarity=0.062 Sum_probs=151.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC----C
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS----G 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d----G 97 (1196)
.+.+++||+++..+++.+.++.|+.|+. .+++.. .+ . ..+...|.+++|+|||+.+++...+ +
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~--~~~~~~-~~-------~---~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINP--ETKEIK-RP-------F---VSHKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECT--TTCCEE-EE-------E---ECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeC--CCCcEE-EE-------e---eCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 5678899999884445567788999998 444321 11 1 0113579999999999988777666 6
Q ss_pred cEEEEECCCCeEE-Eee--eecCcEEEEEECCCCCEEEEEeC------CceEEEEeccCceeeeeecccccCccccccCc
Q 000992 98 LLLLHSVDGNATE-VVG--RVEGGVRFISPSPDGDLLGVTTG------FGQILVMTHDWDLLYENPLEELAEGFDVHEPE 168 (1196)
Q Consensus 98 ~I~lw~~~~~~~e-~vg--~~~~~I~~~awSPDg~~LA~~s~------d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tq 168 (1196)
.|.+||.+++.+. ... .....+.+++|+|||+++++... .+.|..++.......... .
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~----------- 179 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII--Q----------- 179 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE--E-----------
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee--c-----------
Confidence 8999999987654 322 12356999999999998876654 244544432211111110 0
Q ss_pred cccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEE--------eccCCCceeEEEEcCCCCeEEE
Q 000992 169 LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQAS--------SELKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 169 f~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~--------~e~~~~~v~slawsPdG~~IAs 239 (1196)
.......++|+|||+++. ++. ..++.|.+|+.. +|..... ..++ .....+++.|+|++.++
T Consensus 180 ---~~~~~~~i~~~~dg~~l~-v~~-----~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~ 249 (333)
T 2dg1_A 180 ---NISVANGIALSTDEKVLW-VTE-----TTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVA 249 (333)
T ss_dssp ---EESSEEEEEECTTSSEEE-EEE-----GGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEE
T ss_pred ---CCCcccceEECCCCCEEE-EEe-----CCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEE
Confidence 002347899999998665 343 134789999985 3443221 1111 35688999999998887
Q ss_pred EecCCCCCCCCeEEEEeCCCeeEEEEEeccCCC---CcEEEEEEccCCCeeEEEEccC
Q 000992 240 VYDRKSENKCPSIVFYERNGLERSSFDINEQID---STVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~---~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
...+ ..|..|+.+|.....+.++.... ..+.+++|+|||+.|.+++.++
T Consensus 250 ~~~~------~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 250 MYGQ------GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EETT------TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EcCC------CEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 7543 46999999887665554432101 1588999999998887776654
No 180
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.38 E-value=1.1e-10 Score=148.51 Aligned_cols=231 Identities=10% Similarity=-0.022 Sum_probs=142.6
Q ss_pred CEEEEEEccCCCEEEEEECC-----CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCce------------
Q 000992 77 SITAFDYLMEKEALIVGTSS-----GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ------------ 139 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~d-----G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~t------------ 139 (1196)
.+.+++|||||+.||.++.+ .+|++||+.+++..........+..++|||| +.|++++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 57899999999999988754 3599999999875322111112357899999 99999987664
Q ss_pred --EEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC--c-E
Q 000992 140 --ILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--T-L 214 (1196)
Q Consensus 140 --V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G--~-l 214 (1196)
|.+|...-.......+... ..+...+..++|||||++++ +++.+.. .....|++||..+| + .
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~-----------~~~~~~~~~~~~SpDG~~l~-~~~~~~~-~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFAT-----------PELPKRGHGASVSSDGRWVV-ITSSEGT-DPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECC-----------TTCTTCEEEEEECTTSCEEE-EEEECTT-CSCCEEEEEEEETTEECCC
T ss_pred CEEEEEECCCCchhCEEEecc-----------CCCCeEEEEEEECCCCCEEE-EEEEccC-CCcceEEEEECCCCCCccc
Confidence 5555432111000011000 01223478999999999998 4543211 13468999999666 4 4
Q ss_pred EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe--eEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000992 215 QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL--ERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 215 ~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl--~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
.....+..+. ... |+|+|+.|+..+.+. .....|..|+.++. ....+ ++. ....+.+++|+ ++.++++...
T Consensus 310 ~~l~~~~~~~-~~~-~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l-~~~-~~~~l~~~~~~-~~~lv~~~~~ 382 (741)
T 1yr2_A 310 TALIPDLKAQ-WDF-VDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTV-VPE-SKDNLESVGIA-GNRLFASYIH 382 (741)
T ss_dssp EEEECSSSSC-EEE-EEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEE-ECC-CSSEEEEEEEE-BTEEEEEEEE
T ss_pred EEecCCCCce-EEE-EeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEE-ecC-CCCeEEEEEEE-CCEEEEEEEE
Confidence 4443333333 333 459999999887642 12467888987652 21221 232 23457788998 7778888888
Q ss_pred cCCcceEEEEEec-CCEEEEEEEEEEecCCc-EEEEEccCCCc
Q 000992 293 FEEYDSVKICFFS-NNHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 293 d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1196)
++ ..+||... +.. ..+.+.++.... ..+.|+|++..
T Consensus 383 dg---~~~l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~ 420 (741)
T 1yr2_A 383 DA---KSQVLAFDLDGK--PAGAVSLPGIGSASGLSGRPGDRH 420 (741)
T ss_dssp TT---EEEEEEEETTSC--EEEECBCSSSCEEEEEECCBTCSC
T ss_pred CC---EEEEEEEeCCCC--ceeeccCCCCeEEEEeecCCCCCE
Confidence 87 77777664 222 123444432222 66789998765
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.38 E-value=9.9e-11 Score=133.80 Aligned_cols=243 Identities=10% Similarity=0.021 Sum_probs=156.9
Q ss_pred CCEEEEEEccCCCEEEEEECC------------------------CcEEEEECCCCeEE-Eee-eecCcEEEEEECCCCC
Q 000992 76 DSITAFDYLMEKEALIVGTSS------------------------GLLLLHSVDGNATE-VVG-RVEGGVRFISPSPDGD 129 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~d------------------------G~I~lw~~~~~~~e-~vg-~~~~~I~~~awSPDg~ 129 (1196)
+.|.+|+++|+|+.+++.+.+ |+|.+||..++++. ..+ .+-.....++++|||+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 579999999999999888777 57999999876653 333 2224689999999999
Q ss_pred EEEEEeCCceEEEEeccCc--eeeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEE
Q 000992 130 LLGVTTGFGQILVMTHDWD--LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKV 206 (1196)
Q Consensus 130 ~LA~~s~d~tV~l~~~~~d--~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irV 206 (1196)
++++.+.++.|.+|+.+.. .+....-.... +. -.++-.....|+++| +|.+++ +.+. .++.|++
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~-g~------~~~~~~~P~~ia~~~~~g~lyv-~d~~-----~~~~I~~ 170 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQP-GS------DQNHFCQPTDVAVEPSTGAVFV-SDGY-----CNSRIVQ 170 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBC-CC------STTCCSSEEEEEECTTTCCEEE-EECS-----SCCEEEE
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCC-CC------CccccCCCcEEEEeCCCCeEEE-EeCC-----CCCeEEE
Confidence 9988888999999876554 22222100000 00 001123468999999 888887 4421 3589999
Q ss_pred EECCCCcEEEEeccCC----------CceeEEEEcCC-CCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCc
Q 000992 207 WERDSGTLQASSELKA----------FMGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDST 274 (1196)
Q Consensus 207 Wd~~~G~l~~~~e~~~----------~~v~slawsPd-G~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~ 274 (1196)
|+. +|++..+..... .....|+++|+ |+++++... ...|+.|+.+ |.....+.... ....
T Consensus 171 ~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------~~~I~~~~~~~G~~~~~~~~~~-~~~~ 242 (329)
T 3fvz_A 171 FSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------NGRIQCFKTDTKEFVREIKHAS-FGRN 242 (329)
T ss_dssp ECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------TTEEEEEETTTCCEEEEECCTT-TTTC
T ss_pred EcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------CCEEEEEECCCCcEEEEEeccc-cCCC
Confidence 998 999888764211 23689999999 666665544 3589999987 87665443222 2346
Q ss_pred EEEEEEccCCCeeEEEEcc----CCcceEEEEEecCCEEEEEEEEEE---ecCCcEEEEEccCCCceEEEEe-cCCcE
Q 000992 275 VELLKWNCMSDLLAAVVRF----EEYDSVKICFFSNNHWYLKYEIRY---LRRDGIRFMWHPTKPLQLICWT-LDGQI 344 (1196)
Q Consensus 275 V~~laWSpDg~~LAs~~~d----~~~~~V~lW~~~n~~wylkq~l~~---~~~~~~~v~Wsp~~~~~L~~~~-~~g~~ 344 (1196)
+..++|+| |.++++.+.. ....+|++|+..+... ...+.. ....+..++++|++ . |.+.. .++.+
T Consensus 243 ~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG-~-lyvad~~~~~I 315 (329)
T 3fvz_A 243 VFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDG-T-VYIGDAHTNTV 315 (329)
T ss_dssp EEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTS-E-EEEEESSSCCE
T ss_pred cceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCC-C-EEEEECCCCEE
Confidence 88999999 4444333211 1123799999877642 222210 01123778889887 3 44444 34444
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.38 E-value=2.6e-11 Score=153.26 Aligned_cols=270 Identities=9% Similarity=-0.035 Sum_probs=158.4
Q ss_pred ecCCCEEEEEeCCC-----cEEEEecccccccccceeeccccccc-cccCCCCCCEEEEEEccCCCEEEEEE-----CCC
Q 000992 29 DIEQNRLFFASSAN-----NIYSAQLSSFQNERASIKTAISAEIE-HIDLEPGDSITAFDYLMEKEALIVGT-----SSG 97 (1196)
Q Consensus 29 d~~~~~l~~~s~~~-----~i~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~v~~v~~spd~~~La~as-----~dG 97 (1196)
.++++.+|+...+. .|+..+. ..++ ..+.+-+..+. ++ ...+.+++|||||+.||.+. .+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~--~~~~--~~~l~d~~~~a~~~----~~~~~~~~~SPDG~~la~~~~~~G~~~~ 147 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQG--ESGQ--EKVLLDPNGWSKDG----TVSLGTWAVSWDGKKVAFAQKPNAADEA 147 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEES--TTSC--CEEEECGGGSSSSS----CEEEEEEEECTTSSEEEEEEEETTCSCC
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcC--CCCC--cEEEEchHHhccCC----CEEEEEEEECCCCCEEEEEECCCCCceE
Confidence 37888888886532 2455544 2222 22210001111 11 12588999999999999543 345
Q ss_pred cEEEEECCCCeEEEeeeecCcE--EEEEECCCCCEEEEEeCCce-------------EEEEeccCceeeeeecccccCcc
Q 000992 98 LLLLHSVDGNATEVVGRVEGGV--RFISPSPDGDLLGVTTGFGQ-------------ILVMTHDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I--~~~awSPDg~~LA~~s~d~t-------------V~l~~~~~d~~~~~~l~~~~~~~ 162 (1196)
+|++||+.+++....+. -.++ ..++|||||+.|++++.|.+ |.+|+..-.......+...
T Consensus 148 ~i~v~dl~tg~~~~~~~-~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~---- 222 (695)
T 2bkl_A 148 VLHVIDVDSGEWSKVDV-IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER---- 222 (695)
T ss_dssp EEEEEETTTCCBCSSCC-BSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC----
T ss_pred EEEEEECCCCCCcCCcc-cCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec----
Confidence 89999999876531111 1223 67999999999999998776 8777643221111111111
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEec
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~ 242 (1196)
..+...+..++|||||++++ +++.+. .....|.+|+..+|+......+.. .+....| |+|. |...+.
T Consensus 223 -------~~~~~~~~~~~~SpDG~~l~-~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~-~~~~~~~-~~g~-l~~~s~ 289 (695)
T 2bkl_A 223 -------TGDPTTFLQSDLSRDGKYLF-VYILRG--WSENDVYWKRPGEKDFRLLVKGVG-AKYEVHA-WKDR-FYVLTD 289 (695)
T ss_dssp -------CCCTTCEEEEEECTTSCCEE-EEEEET--TTEEEEEEECTTCSSCEEEEECSS-CCEEEEE-ETTE-EEEEEC
T ss_pred -------CCCCEEEEEEEECCCCCEEE-EEEeCC--CCceEEEEEcCCCCceEEeecCCC-ceEEEEe-cCCc-EEEEEC
Confidence 02234578999999999998 454321 023478888775666655544333 3455567 7777 544443
Q ss_pred CCCCCCCCeEEEEeCCCeeE---EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEEEEEEEEe
Q 000992 243 RKSENKCPSIVFYERNGLER---SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYL 318 (1196)
Q Consensus 243 d~~~~~~~~V~~~e~nGl~~---~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wylkq~l~~~ 318 (1196)
.. .....|..|+.++... ..+ ++......|.+++|+ ++.++++...++ ..+||... +.. ..+.+.++
T Consensus 290 ~~--~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~l~~~~~~-~~~lv~~~~~dg---~~~l~~~~~~g~--~~~~l~~~ 360 (695)
T 2bkl_A 290 EG--APRQRVFEVDPAKPARASWKEI-VPEDSSASLLSVSIV-GGHLSLEYLKDA---TSEVRVATLKGK--PVRTVQLP 360 (695)
T ss_dssp TT--CTTCEEEEEBTTBCSGGGCEEE-ECCCSSCEEEEEEEE-TTEEEEEEEETT---EEEEEEEETTCC--EEEECCCS
T ss_pred CC--CCCCEEEEEeCCCCCccCCeEE-ecCCCCCeEEEEEEE-CCEEEEEEEECC---EEEEEEEeCCCC--eeEEecCC
Confidence 21 1246898998754221 121 222223468889999 888999999888 78888765 221 12334443
Q ss_pred cCCc-EEEEEccCCCc
Q 000992 319 RRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 319 ~~~~-~~v~Wsp~~~~ 333 (1196)
.... ..+.|+|++..
T Consensus 361 ~~~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 361 GVGAASNLMGLEDLDD 376 (695)
T ss_dssp SSSEECCCBSCTTCSE
T ss_pred CCeEEEEeecCCCCCE
Confidence 2222 45678887754
No 183
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.38 E-value=8.5e-11 Score=136.57 Aligned_cols=309 Identities=14% Similarity=0.100 Sum_probs=172.6
Q ss_pred CCCEEEEEE------CCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeC----------CceEEEEec-cC
Q 000992 86 EKEALIVGT------SSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTG----------FGQILVMTH-DW 147 (1196)
Q Consensus 86 d~~~La~as------~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~----------d~tV~l~~~-~~ 147 (1196)
+++.+.++. .||+|.+||..++++. .+.....+ .++|||||++|.+++. +++|.+|+. .+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 555555543 4789999999887653 22221233 8999999999999862 678988863 34
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCcee
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGA 226 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~ 226 (1196)
..+.++.+.... + .+......++++|||++|. ++... .+.+|.|||..+++...+ .. +.+. +
T Consensus 92 ~~~~~i~~~~~~---------~-~~g~~p~~i~~spdg~~l~-v~n~~----~~~~v~v~d~~~~~~~~~~i~-~~~~-~ 154 (361)
T 2oiz_A 92 TFEKEISLPPKR---------V-QGLNYDGLFRQTTDGKFIV-LQNAS----PATSIGIVDVAKGDYVEDVTA-AAGC-W 154 (361)
T ss_dssp CEEEEEEECTTB---------C-CBCCCGGGEEECTTSSEEE-EEEES----SSEEEEEEETTTTEEEEEEGG-GTTE-E
T ss_pred cEEEEEEcCccc---------c-ccCCCcceEEECCCCCEEE-EECCC----CCCeEEEEECCCCcEEEEEec-CCCc-c
Confidence 555555433211 0 0012236799999999998 66421 247899999999988776 43 3322 3
Q ss_pred EEEEcCCC-CeEEEEecCCCCCCCCeEEEEeC--CCeeEEEEEe-c--cCCCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 227 VLEWMPSG-ANIAAVYDRKSENKCPSIVFYER--NGLERSSFDI-N--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 227 slawsPdG-~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~~f~l-~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
.+.+.|+| ..+++.+.+. .+.+|.. +|........ . .... ....+.++|||..++..+.++ .|.
T Consensus 155 ~v~~~p~~~~~~~~~~~dg------~~~~v~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~---~v~ 224 (361)
T 2oiz_A 155 SVIPQPNRPRSFMTICGDG------GLLTINLGEDGKVASQSRSKQMFSVKD-DPIFIAPALDKDKAHFVSYYG---NVY 224 (361)
T ss_dssp EEEECTTSSSEEEEEETTS------SEEEEEECTTSSEEEEEECCCCSCTTT-SCBCSCCEECSSEEEEEBTTS---EEE
T ss_pred eeEEcCCCCeeEEEECCCC------cEEEEEECCCCcEeeeccccceEcCCC-CceEEEecccCCEEEEEeCCC---eEE
Confidence 46677876 4555555542 3555542 3433211110 0 0111 112345588898888877776 899
Q ss_pred EEEecCCEEEEEEEEEEec----------CCcEEEEEccCCCceEEEEec-CCcEEEEEEEEeeecCCCeeEEEEcCCEE
Q 000992 301 ICFFSNNHWYLKYEIRYLR----------RDGIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTAVMENSTALVIDGSKI 369 (1196)
Q Consensus 301 lW~~~n~~wylkq~l~~~~----------~~~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~~~d~~~v~viDg~~l 369 (1196)
+|++..........+.... .....+.++|++.. +.+... +|.. ++ ..+....+.++|-.+.
T Consensus 225 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~-lyv~~~~~~~~------~~-~~~~~~~v~viD~~t~ 296 (361)
T 2oiz_A 225 SADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR-MYVFMHPDGKE------GT-HKFPAAEIWVMDTKTK 296 (361)
T ss_dssp EEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE-EEEEEESSCCT------TC-TTCCCSEEEEEETTTT
T ss_pred EEEecCCCceecccccccCccccccccccCCeeEEEEecCCCe-EEEEEccCCCc------cc-ccCCCceEEEEECCCC
Confidence 9998643221212221100 00012445555443 333221 1100 00 0001224555553322
Q ss_pred EEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC--CccccccCCceeeeeecccccC
Q 000992 370 LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP--DMLEDLEGTEFVVEACISETAF 447 (1196)
Q Consensus 370 ~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~--~~~~~~~g~~~~~~~~~~~~~~ 447 (1196)
+ ...++.... +++++|+||| +.|+++.. ++|.+||..+. .....+.+ .-
T Consensus 297 ~-------------~v~~i~~~~-p~~ia~spdg--~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~------------~G 347 (361)
T 2oiz_A 297 Q-------------RVARIPGRD-ALSMTIDQQR--NLMLTLDG-GNVNVYDISQPEPKLLRTIEG------------AA 347 (361)
T ss_dssp E-------------EEEEEECTT-CCEEEEETTT--TEEEEECS-SCEEEEECSSSSCEEEEEETT------------SC
T ss_pred c-------------EEEEEecCC-eeEEEECCCC--CEEEEeCC-CeEEEEECCCCcceeeEEecc------------CC
Confidence 1 112333334 8899999999 88888776 99999998864 33322110 11
Q ss_pred CcEEEEEEecCCe
Q 000992 448 GSVIHLIWLGSHL 460 (1196)
Q Consensus 448 ~~v~~l~~~~d~~ 460 (1196)
..++.++++|+|.
T Consensus 348 ~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 348 EASLQVQFHPVGG 360 (361)
T ss_dssp SSEEEEEECCCSC
T ss_pred CCcEEEEecCCCC
Confidence 3678899999874
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.38 E-value=6.1e-10 Score=137.10 Aligned_cols=340 Identities=13% Similarity=0.003 Sum_probs=203.7
Q ss_pred eecCCCEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECC-
Q 000992 28 LDIEQNRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVD- 105 (1196)
Q Consensus 28 ~d~~~~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~- 105 (1196)
.|+ ++.+|++ .+++.+..+|. .+++. +.+++. +..+..+.|||||+.|.+++.+|.|.+||..
T Consensus 163 ~d~-~~~~~V~~~~~~~V~viD~--~t~~v---~~~i~~---------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 163 WDL-ENLFSVTLRDAGQIALIDG--STYEI---KTVLDT---------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp CCG-GGEEEEEETTTTEEEEEET--TTCCE---EEEEEC---------SSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred cCC-CceEEEEeCCCCeEEEEEC--CCCeE---EEEEeC---------CCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 444 4566666 45778999998 55554 222222 2357799999999999999999999999995
Q ss_pred -CCeE-EEeeeecCcEEEEEEC----CCCCEEEEEeC-CceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 106 -GNAT-EVVGRVEGGVRFISPS----PDGDLLGVTTG-FGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 106 -~~~~-e~vg~~~~~I~~~awS----PDg~~LA~~s~-d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
++++ ..+.. ..+-..++|| |||++|.++.. +++|.+++ ..++++..+...... +....+++ ...+.
T Consensus 228 ~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~----~~~~~~~p-~~rva 301 (567)
T 1qks_A 228 KEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT----YDEQEYHP-EPRVA 301 (567)
T ss_dssp SSCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC----TTTCCEES-CCCEE
T ss_pred CCCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc----cccccccC-CCceE
Confidence 5443 22221 2346789999 79999988875 58898886 456666555443211 00000000 12567
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
.|..|+++..++ ++.. ..++|.++|..+.+..... -+.....+.+.|+|||+++.++... .+.|.+++
T Consensus 302 ~i~~s~~~~~~v-v~~~-----~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD 370 (567)
T 1qks_A 302 AILASHYRPEFI-VNVK-----ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA-----RNKLVVID 370 (567)
T ss_dssp EEEECSSSSEEE-EEET-----TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEE
T ss_pred EEEEcCCCCEEE-EEec-----CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC-----CCeEEEEE
Confidence 899999988777 5542 4589999998554332222 1233445789999999998777654 35788998
Q ss_pred C-CCeeEEEEEe-c-cCCCCcEEEEEEccCCC-eeEEEE-ccCCcceEEEEEecC-----CEEEEEEEEEEecCCcEEEE
Q 000992 257 R-NGLERSSFDI-N-EQIDSTVELLKWNCMSD-LLAAVV-RFEEYDSVKICFFSN-----NHWYLKYEIRYLRRDGIRFM 326 (1196)
Q Consensus 257 ~-nGl~~~~f~l-~-~~~~~~V~~laWSpDg~-~LAs~~-~d~~~~~V~lW~~~n-----~~wylkq~l~~~~~~~~~v~ 326 (1196)
. .|.......+ . .++.+.-..+ +.|++. +.++.. .++ +|.++++.. +.|...+++.........+.
T Consensus 371 ~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~---~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~ 446 (567)
T 1qks_A 371 TKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDD---SVALIGTDPEGHPDNAWKILDSFPALGGGSLFIK 446 (567)
T ss_dssp TTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSS---EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred CCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCC---eEEEecCCCCCCccccCEEEEEEecCCCCCEEEE
Confidence 5 4444443333 1 2332222122 588854 444432 334 799999876 23755666665322226677
Q ss_pred EccCCCceEEEEecCCcEEEEEEEEeeecC--CCeeEEEEcCCEE---------EEeecccc-CCCCCceeeeecCCCCE
Q 000992 327 WHPTKPLQLICWTLDGQITTYNFIWTTAVM--ENSTALVIDGSKI---------LVTPLSLS-LMPPPMYLFSLKFPTAV 394 (1196)
Q Consensus 327 Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~--d~~~v~viDg~~l---------~lt~l~~~-~vpppm~~~~l~~~~~V 394 (1196)
.||+++. |.+.+.-+ ++ -...++|+|-.++ .+-+...| .+|. -...+
T Consensus 447 ~~p~~~~-l~v~~~~~------------~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~ 505 (567)
T 1qks_A 447 THPNSQY-LYVDATLN------------PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE--------GQPRV 505 (567)
T ss_dssp CCTTCSE-EEEECTTC------------SSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCS--------SCCEE
T ss_pred eCCCCCe-EEEecCCC------------CCcccCceEEEEECCcccccccCCCcEEeccccccccCC--------CCcce
Confidence 8888764 44433100 11 0124556655443 22222111 1111 13468
Q ss_pred EEEEEecCCCCCEE-EEEE----CCCcEEEEeCCCCC
Q 000992 395 TEMAFYSKSSKNCL-AAIL----SDGCLCVVDLPAPD 426 (1196)
Q Consensus 395 ~~Vafspdg~~~~l-As~~----~dg~v~lw~~~~~~ 426 (1196)
..+.|+|+| +.+ ++.. .++.|.++|..+..
T Consensus 506 ~~~~~~~~G--~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 506 VQGEFNKDG--TEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp EEEEECTTS--SEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred EeeeECCCC--CEEEEEeecCCCCCCcEEEEECCCce
Confidence 899999999 554 4443 37899999987643
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.37 E-value=1e-10 Score=148.00 Aligned_cols=248 Identities=9% Similarity=-0.015 Sum_probs=161.3
Q ss_pred ceeEEeeecCCCEEEEEeCCC-----cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC
Q 000992 22 ILQFSALDIEQNRLFFASSAN-----NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~-----~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d 96 (1196)
.+...+|.+|+..|+++++++ .|+.||+ .+++.. .. + +. ...+.+++|+|||+.|+.++.+
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~--~tg~~~-~~-~----~~------~~~~~~~~wspDg~~l~~~~~~ 191 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV--DGAKEL-PD-V----LE------RVKFSCMAWTHDGKGMFYNAYP 191 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEET--TTTEEE-EE-E----EE------EECSCCEEECTTSSEEEEEECC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC--CCCCCC-cc-c----cc------CcccceEEEEeCCCEEEEEEEC
Confidence 366789999999998886532 7999999 555431 11 1 11 1135679999999999999988
Q ss_pred Cc----------------EEEEECCCCeE---EEeee--ecCcEEEEEECCCCCEEEEEeC-----CceEEEEeccC---
Q 000992 97 GL----------------LLLHSVDGNAT---EVVGR--VEGGVRFISPSPDGDLLGVTTG-----FGQILVMTHDW--- 147 (1196)
Q Consensus 97 G~----------------I~lw~~~~~~~---e~vg~--~~~~I~~~awSPDg~~LA~~s~-----d~tV~l~~~~~--- 147 (1196)
+. |.+|++.+++. .+... +...+..++|||||++|++++. +..|.+|+..-
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred CccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence 76 99999987642 22221 3455889999999999999875 45677765321
Q ss_pred ---ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc---EEEEeccC
Q 000992 148 ---DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT---LQASSELK 221 (1196)
Q Consensus 148 ---d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~---l~~~~e~~ 221 (1196)
.......+. .+.+.+. ..|+|||+.|+ +.+-.. .....|.+||..++. ......+.
T Consensus 272 ~~~~~~~~~~l~--------------~~~~~~~-~~~s~dg~~l~-~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~ 333 (710)
T 2xdw_A 272 GITGILKWVKLI--------------DNFEGEY-DYVTNEGTVFT-FKTNRH--SPNYRLINIDFTDPEESKWKVLVPEH 333 (710)
T ss_dssp SSCSSCCCEEEE--------------CSSSSCE-EEEEEETTEEE-EEECTT--CTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred ccCCccceEEee--------------CCCCcEE-EEEeccCCEEE-EEECCC--CCCCEEEEEeCCCCCcccceeccCCC
Confidence 000001111 1122233 36999999888 444211 135689999996664 23333333
Q ss_pred C-CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-Ccce
Q 000992 222 A-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-EYDS 298 (1196)
Q Consensus 222 ~-~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~-~~~~ 298 (1196)
+ ..+.+++|+|++.++++...+. ...|.+|+. +|..... +..+ .+.|..++|||||+.|+...... .-.+
T Consensus 334 ~~~~~~~~~~~~~~~lv~~~~~~g----~~~l~~~~~~~g~~~~~--l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 406 (710)
T 2xdw_A 334 EKDVLEWVACVRSNFLVLCYLHDV----KNTLQLHDLATGALLKI--FPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGI 406 (710)
T ss_dssp SSCEEEEEEEETTTEEEEEEEETT----EEEEEEEETTTCCEEEE--ECCC-SSEEEEEECCTTCSEEEEEEECSSCCCE
T ss_pred CCCeEEEEEEEcCCEEEEEEEECC----EEEEEEEECCCCCEEEe--cCCC-CceEEEEecCCCCCEEEEEEeCCCCCCE
Confidence 3 3678899999888888888764 345777886 6754343 3333 45788999999998777654332 1226
Q ss_pred EEEEEecCCE
Q 000992 299 VKICFFSNNH 308 (1196)
Q Consensus 299 V~lW~~~n~~ 308 (1196)
|.+|++.+..
T Consensus 407 i~~~d~~tg~ 416 (710)
T 2xdw_A 407 IYHCDLTKEE 416 (710)
T ss_dssp EEEEETTSSS
T ss_pred EEEEECCCCc
Confidence 8889887643
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.33 E-value=2.1e-10 Score=125.74 Aligned_cols=237 Identities=7% Similarity=-0.046 Sum_probs=155.9
Q ss_pred ceeEEeeecCCCEEEE-E-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFF-A-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~-~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I 99 (1196)
.+.++++|+++. ||+ + +.++.|+.|+. ..+.. .. + .......+.+|++.|+|+.+++.. +|.|
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~--~~~~~--~~------~---~~~~~~~p~~i~~~~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLAT--GSTGT--TV------L---PFNGLYQPQGLAVDGAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC---------EE------C---CCCSCCSCCCEEECTTCCEEEEET-TTEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecC--CCccc--ce------E---eeCCcCCcceeEECCCCCEEEEcC-CCEE
Confidence 567899999887 777 6 45778999987 33322 11 0 011124678899999999555544 8899
Q ss_pred EEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 100 LLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
..|+.+++....... ....+.+++++|||++.++.+.++.|.+|+.. .... .... . ........
T Consensus 90 ~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-~~~~-~~~~-~------------~~~~~p~~ 154 (270)
T 1rwi_B 90 VTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG-SKTQ-TVLP-F------------TGLNDPDG 154 (270)
T ss_dssp EEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTT-CCSC-EECC-C------------CSCCSCCC
T ss_pred EEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECC-Ccee-Eeec-c------------ccCCCcee
Confidence 999998876553322 12568999999999988777778888877421 1100 0000 0 01123468
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
|+++|||++++ +.. .++.|.+|+..++...............|++.|+|++.++...+ ..|..|+.+
T Consensus 155 i~~~~~g~l~v-~~~------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~------~~v~~~~~~ 221 (270)
T 1rwi_B 155 VAVDNSGNVYV-TDT------DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT------NQVVKLLAG 221 (270)
T ss_dssp EEECTTCCEEE-EEG------GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTT------SCEEEECTT
T ss_pred EEEeCCCCEEE-EEC------CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCC------CcEEEEcCC
Confidence 99999999777 343 24789999995444433322222456899999999877776543 468899988
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
|..... ....+-..+..|+++|||+++++...++ .|++++...
T Consensus 222 ~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~~~~~---~v~~~~~~~ 264 (270)
T 1rwi_B 222 STTSTV--LPFTGLNTPLAVAVDSDRTVYVADRGND---RVVKLTSLE 264 (270)
T ss_dssp CSCCEE--CCCCSCSCEEEEEECTTCCEEEEEGGGT---EEEEECCCG
T ss_pred CCccee--eccCCCCCceeEEECCCCCEEEEECCCC---EEEEEcCCC
Confidence 754321 2211224689999999999887777777 899988764
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.33 E-value=3.8e-10 Score=126.22 Aligned_cols=234 Identities=11% Similarity=0.034 Sum_probs=150.8
Q ss_pred CCEEEEEEccCCC-EEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeee
Q 000992 76 DSITAFDYLMEKE-ALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~-~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~ 153 (1196)
..+.+++|+|+|+ .+++++.+|.|..|+.+++ ..........+.+++|+|||+++++..+++.|.+|+. +.... ..
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~-~~ 105 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE-SI 105 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE-EE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE-EE
Confidence 4578999999999 7788888999999999988 6655555677999999999999888777788988864 33321 11
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEe---eccc------c-ccCCCCEEEEEECCCCcEEEEeccCCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL---SEFC------N-SSKLHKRLKVWERDSGTLQASSELKAF 223 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv---ss~d------~-~~~~d~~irVWd~~~G~l~~~~e~~~~ 223 (1196)
. .... .. ....+..++|+|||++++|- ++.+ . .....+.|..++. .|++..... ...
T Consensus 106 ~-~~~~-~~---------~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~~~~-~~~ 172 (296)
T 3e5z_A 106 A-DSFE-GK---------KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP-DGTLSAPIR-DRV 172 (296)
T ss_dssp E-CEET-TE---------ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT-TSCEEEEEC-CCS
T ss_pred e-eccC-CC---------CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC-CCCEEEeec-CCC
Confidence 0 0000 00 01234679999999988831 2100 0 0001346777777 477655433 344
Q ss_pred ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC--CCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 224 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--NGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 224 ~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~--nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
....++|+|||+++++.+. ...|..|+. +|.. .....+. .....+..|++++||+++++. ++ .|+
T Consensus 173 ~~~gi~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~--~~---~v~ 240 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVHFT-VEPGKTDGLRVDAGGLIWASA--GD---GVH 240 (296)
T ss_dssp SEEEEEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEEC-CSSSCCCSEEEBTTSCEEEEE--TT---EEE
T ss_pred CCccEEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEee-CCCCCCCeEEECCCCCEEEEc--CC---eEE
Confidence 5689999999999844443 357888986 4543 1111222 223456789999999987776 44 699
Q ss_pred EEEecCCEEEEEEEEEEecCCcEEEEEc-cCCCceEEEEecC
Q 000992 301 ICFFSNNHWYLKYEIRYLRRDGIRFMWH-PTKPLQLICWTLD 341 (1196)
Q Consensus 301 lW~~~n~~wylkq~l~~~~~~~~~v~Ws-p~~~~~L~~~~~~ 341 (1196)
+|+.... +...+..+.. ...+.|+ |++. +|.+.+.+
T Consensus 241 ~~~~~g~---~~~~~~~~~~-~~~~~f~~~d~~-~L~v~t~~ 277 (296)
T 3e5z_A 241 VLTPDGD---ELGRVLTPQT-TSNLCFGGPEGR-TLYMTVST 277 (296)
T ss_dssp EECTTSC---EEEEEECSSC-CCEEEEESTTSC-EEEEEETT
T ss_pred EECCCCC---EEEEEECCCC-ceeEEEECCCCC-EEEEEcCC
Confidence 9998642 1233433323 5677884 5554 46666643
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.29 E-value=3.9e-09 Score=129.94 Aligned_cols=329 Identities=12% Similarity=0.040 Sum_probs=190.5
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec---cCceeeeeecccccC
Q 000992 85 MEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH---DWDLLYENPLEELAE 160 (1196)
Q Consensus 85 pd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~---~~d~~~~~~l~~~~~ 160 (1196)
|.+..+++...+|+|.+||..++++. .+.. ...+..++|||||++|.+++.|+.|.+++. ....+.++....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--- 240 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--- 240 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---
Confidence 44556677778899999999987653 3332 345779999999999999999999998874 344444443322
Q ss_pred ccccccCccccCCCCeEEEEEc----cCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc----CC-------Cce
Q 000992 161 GFDVHEPELSSSFSFKSPISWR----GDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL----KA-------FMG 225 (1196)
Q Consensus 161 ~~~Vs~tqf~~~~~~v~~isWs----pDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~----~~-------~~v 225 (1196)
.-..++|| |||+++. ++.. ..++|.|+|..+++.+.+..- .+ ..+
T Consensus 241 --------------~P~~ia~s~~~~pDGk~l~-v~n~-----~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv 300 (567)
T 1qks_A 241 --------------EARSIETSKMEGWEDKYAI-AGAY-----WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV 300 (567)
T ss_dssp --------------EEEEEEECCSTTCTTTEEE-EEEE-----ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred --------------CCceeEEccccCCCCCEEE-EEEc-----cCCeEEEEECCCCcEEEEEeccccccccccccCCCce
Confidence 23689999 7999998 6653 358999999989988876431 11 145
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
..+..||++..+...-.+ ...|.+++..... .....+. .......+.|+|||+++.++.... +.|.+||+
T Consensus 301 a~i~~s~~~~~~vv~~~~-----~g~v~~vd~~~~~~~~v~~i~--~~~~~~d~~~~pdgr~~~va~~~s--n~V~ViD~ 371 (567)
T 1qks_A 301 AAILASHYRPEFIVNVKE-----TGKILLVDYTDLNNLKTTEIS--AERFLHDGGLDGSHRYFITAANAR--NKLVVIDT 371 (567)
T ss_dssp EEEEECSSSSEEEEEETT-----TTEEEEEETTCSSEEEEEEEE--CCSSEEEEEECTTSCEEEEEEGGG--TEEEEEET
T ss_pred EEEEEcCCCCEEEEEecC-----CCeEEEEecCCCccceeeeee--ccccccCceECCCCCEEEEEeCCC--CeEEEEEC
Confidence 788899998765544433 3578777754321 0111121 123467899999999988877533 37999999
Q ss_pred cCCEEEEEEEEEE-ec--C--CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC
Q 000992 305 SNNHWYLKYEIRY-LR--R--DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 379 (1196)
Q Consensus 305 ~n~~wylkq~l~~-~~--~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v 379 (1196)
.+.. +...+.. .. . .+.. .++|++.. +|.+...+.+.+.++|-..-+--.. .|-
T Consensus 372 ~t~k--l~~~i~vgg~~Phpg~g~~-~~~p~~g~----------------v~~t~~~g~~~Vsvid~~~~~~~~~-~~k- 430 (567)
T 1qks_A 372 KEGK--LVAIEDTGGQTPHPGRGAN-FVHPTFGP----------------VWATSHMGDDSVALIGTDPEGHPDN-AWK- 430 (567)
T ss_dssp TTTE--EEEEEECSSSSBCCTTCEE-EEETTTEE----------------EEEEEBSSSSEEEEEECCTTTCTTT-BTS-
T ss_pred CCCc--EEEEEeccCcCCCCcccee-eECCCCCc----------------EEEeCCCCCCeEEEecCCCCCCccc-cCE-
Confidence 9865 3333332 11 0 1111 13555332 2222111223455554321000000 000
Q ss_pred CCCceeeeecCCC-CEEEEEEecCCCCCEEEEEEC-------CCcEEEEeCCCCCccccccCC--ceeeeeec----ccc
Q 000992 380 PPPMYLFSLKFPT-AVTEMAFYSKSSKNCLAAILS-------DGCLCVVDLPAPDMLEDLEGT--EFVVEACI----SET 445 (1196)
Q Consensus 380 pppm~~~~l~~~~-~V~~Vafspdg~~~~lAs~~~-------dg~v~lw~~~~~~~~~~~~g~--~~~~~~~~----~~~ 445 (1196)
-.+++...+ .-..|.++|++ +.|-+... .++|.+++..+... .|. .+.+.+.. ...
T Consensus 431 ----vv~~i~~~g~g~~~i~~~p~~--~~l~v~~~~~~~~~~~~~v~v~d~~~~~~----~g~~~~~~~~~~~~~~~~~~ 500 (567)
T 1qks_A 431 ----ILDSFPALGGGSLFIKTHPNS--QYLYVDATLNPEAEISGSVAVFDIKAMTG----DGSDPEFKTLPIAEWAGITE 500 (567)
T ss_dssp ----EEEEEECSCSCCCCEECCTTC--SEEEEECTTCSSHHHHTCEEEEEGGGCCC----SSSCCCEEEECHHHHHTCCS
T ss_pred ----EEEEEecCCCCCEEEEeCCCC--CeEEEecCCCCCcccCceEEEEECCcccc----cccCCCcEEeccccccccCC
Confidence 012222221 11346788998 77776552 36999999875310 111 12222100 001
Q ss_pred cCCcEEEEEEecCCeEEEEEec-C--CCCceEEEE
Q 000992 446 AFGSVIHLIWLGSHLLLSVSHH-G--PRHSNYFRG 477 (1196)
Q Consensus 446 ~~~~v~~l~~~~d~~lla~~~~-~--~~~~~~~~~ 477 (1196)
....++|+.|.++|+.+-++.. + .++.+.+++
T Consensus 501 ~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 501 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 1248999999999976655432 2 235555543
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.28 E-value=1.1e-10 Score=147.60 Aligned_cols=246 Identities=11% Similarity=-0.041 Sum_probs=156.6
Q ss_pred ceeEEeeecCCCEEEEEeC-----CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC
Q 000992 22 ILQFSALDIEQNRLFFASS-----ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-----~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d 96 (1196)
.+.+.+|.+|+..|.+.++ +..|+.||+ .+++.. . +..+. .....+++|+|||+.|+.++.+
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl--~tg~~~-~----~~~~~------~~~~~~~~wspDg~~l~~~~~d 188 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV--DSGEWS-K----VDVIE------GGKYATPKWTPDSKGFYYEWLP 188 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEET--TTCCBC-S----SCCBS------CCTTCCCEECTTSSEEEEEECC
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEEC--CCCCCc-C----CcccC------cccccceEEecCCCEEEEEEec
Confidence 3667899999999887633 357999999 555431 0 00011 1112578999999999999988
Q ss_pred Cc-------------EEEEECCCCe---EEEee--eecCcEEEEEECCCCCEEEEEeCCc----eEEEEeccCceeeeee
Q 000992 97 GL-------------LLLHSVDGNA---TEVVG--RVEGGVRFISPSPDGDLLGVTTGFG----QILVMTHDWDLLYENP 154 (1196)
Q Consensus 97 G~-------------I~lw~~~~~~---~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~----tV~l~~~~~d~~~~~~ 154 (1196)
++ |.+|++.++. ..+.. .+...+.+++|||||++|++++.++ .|.+|+....... .
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~--~ 266 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR--L 266 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE--E
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE--E
Confidence 76 9999998764 22222 1235789999999999999988665 4544432111111 1
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE---EEEeccC-CCceeEEEE
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL---QASSELK-AFMGAVLEW 230 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l---~~~~e~~-~~~v~slaw 230 (1196)
+. .+.+.+....| +||. |...+..+ ..+..|.+||..+|+. .....+. ...+.+++|
T Consensus 267 l~--------------~~~~~~~~~~~-~~g~-l~~~s~~~---~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~ 327 (695)
T 2bkl_A 267 LV--------------KGVGAKYEVHA-WKDR-FYVLTDEG---APRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI 327 (695)
T ss_dssp EE--------------ECSSCCEEEEE-ETTE-EEEEECTT---CTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE
T ss_pred ee--------------cCCCceEEEEe-cCCc-EEEEECCC---CCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE
Confidence 11 12234456667 7777 54133322 2468999999977652 4444333 456788999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-CcceEEEEEecCCE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-EYDSVKICFFSNNH 308 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~-~~~~V~lW~~~n~~ 308 (1196)
+ +|.++++...+. ...|.+++.+|..... +..+..+.|..++|||||+.|+...... .-.+|.+|++.+..
T Consensus 328 ~-~~~lv~~~~~dg----~~~l~~~~~~g~~~~~--l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 328 V-GGHLSLEYLKDA----TSEVRVATLKGKPVRT--VQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp E-TTEEEEEEEETT----EEEEEEEETTCCEEEE--CCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred E-CCEEEEEEEECC----EEEEEEEeCCCCeeEE--ecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8 778888887754 2445555666653332 3334355788899999998888655432 11279999987654
No 190
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.27 E-value=3e-09 Score=119.64 Aligned_cols=224 Identities=10% Similarity=0.126 Sum_probs=148.6
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
...+.+||++++.||.+.. .+.|+.|+. .++... . +. . ...+.+++++|+|+. .++. ++.|.
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~--~~~~~~--~------~~-~----~~~~~~i~~~~dG~l-~v~~-~~~l~ 76 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDS--FTKQVQ--R------VT-M----DAPVSSVALRQSGGY-VATI-GTKFC 76 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEET--TTCCEE--E------EE-C----SSCEEEEEEBTTSSE-EEEE-TTEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEEC--CCCcEE--E------Ee-C----CCceEEEEECCCCCE-EEEE-CCeEE
Confidence 5678999999888888854 678999998 444321 1 10 1 247899999999994 4455 56799
Q ss_pred EEECCCCeEEEeeee-----cCcEEEEEECCCCCEEEEEeCC-----------ceEEEEeccCceeeeeecccccCcccc
Q 000992 101 LHSVDGNATEVVGRV-----EGGVRFISPSPDGDLLGVTTGF-----------GQILVMTHDWDLLYENPLEELAEGFDV 164 (1196)
Q Consensus 101 lw~~~~~~~e~vg~~-----~~~I~~~awSPDg~~LA~~s~d-----------~tV~l~~~~~d~~~~~~l~~~~~~~~V 164 (1196)
+||.++++++.+... ...++.++++|||++.+..... +.|..++.+..... ....
T Consensus 77 ~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~~~------- 147 (297)
T 3g4e_A 77 ALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YFDQ------- 147 (297)
T ss_dssp EEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EEEE-------
T ss_pred EEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE--Eeec-------
Confidence 999998877644322 2358899999999977755322 23333322221110 0000
Q ss_pred ccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEEC--CCCcEEE-----EeccCCCceeEEEEcCCCCeE
Q 000992 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWER--DSGTLQA-----SSELKAFMGAVLEWMPSGANI 237 (1196)
Q Consensus 165 s~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~--~~G~l~~-----~~e~~~~~v~slawsPdG~~I 237 (1196)
-.....++|+|||+++. ++. ...+.|.+|+. .+|.+.. ......+....+++.|+|++.
T Consensus 148 --------~~~pngi~~spdg~~ly-v~~-----~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 148 --------VDISNGLDWSLDHKIFY-YID-----SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLW 213 (297)
T ss_dssp --------ESBEEEEEECTTSCEEE-EEE-----GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEE
T ss_pred --------cccccceEEcCCCCEEE-Eec-----CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEE
Confidence 01236899999999775 332 13578999985 4776532 222234567899999999987
Q ss_pred EEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEc-cCCCeeEEEEccC
Q 000992 238 AAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWN-CMSDLLAAVVRFE 294 (1196)
Q Consensus 238 As~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWS-pDg~~LAs~~~d~ 294 (1196)
++.... ..|..|+.. |.....+.++ ...+.+++|+ ||++.|.+++...
T Consensus 214 va~~~~------~~v~~~d~~tG~~~~~i~~p---~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 214 VACYNG------GRVIRLDPVTGKRLQTVKLP---VDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEETT------TEEEEECTTTCCEEEEEECS---SSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEEcCC------CEEEEEcCCCceEEEEEECC---CCCceEEEEeCCCCCEEEEEcCCc
Confidence 776542 469999986 8766655443 2468999999 9999888877643
No 191
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.23 E-value=1.5e-09 Score=126.07 Aligned_cols=272 Identities=8% Similarity=0.020 Sum_probs=162.2
Q ss_pred EEeeecCCCEEEEEeC----------CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE
Q 000992 25 FSALDIEQNRLFFASS----------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT 94 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~----------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as 94 (1196)
.+++++|+..+|+++. ++.|..||. .+.+....+.. +.. .+..+..+..|+++|||+.|.++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~--~t~~~~~~i~~-~~~----~~~~g~~p~~i~~spdg~~l~v~n 126 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA--DKLTFEKEISL-PPK----RVQGLNYDGLFRQTTDGKFIVLQN 126 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET--TTCCEEEEEEE-CTT----BCCBCCCGGGEEECTTSSEEEEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC--cCCcEEEEEEc-Ccc----ccccCCCcceEEECCCCCEEEEEC
Confidence 8899999999999973 456899998 44433212210 000 011124567899999999999887
Q ss_pred C--CCcEEEEECCCCeEE-E-eeeecCcEEEEEECCCC-CEEEEEeCCceEEEEecc--CceeeeeecccccCccccccC
Q 000992 95 S--SGLLLLHSVDGNATE-V-VGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHD--WDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 95 ~--dG~I~lw~~~~~~~e-~-vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~~--~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
. +++|.+||..++++. . +.. .+-..+.+.|+| ..+++.+.||++.+++.. ...... .+...
T Consensus 127 ~~~~~~v~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~--~~~~~-------- 194 (361)
T 2oiz_A 127 ASPATSIGIVDVAKGDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ--SRSKQ-------- 194 (361)
T ss_dssp ESSSEEEEEEETTTTEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE--EECCC--------
T ss_pred CCCCCeEEEEECCCCcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee--ccccc--------
Confidence 4 688999999987653 3 331 233446678887 667778888888777532 222111 00000
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE--EEecc------CCCc----eeEEEEcCCCC
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ--ASSEL------KAFM----GAVLEWMPSGA 235 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~--~~~e~------~~~~----v~slawsPdG~ 235 (1196)
.|.... .-..+.++|||..++ ..+. ++++.+||...+... ....- ..++ ...++|+|||+
T Consensus 195 ~~~~~~-~~~~~~~~~~g~~~~-~~~~------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~ 266 (361)
T 2oiz_A 195 MFSVKD-DPIFIAPALDKDKAH-FVSY------YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG 266 (361)
T ss_dssp CSCTTT-SCBCSCCEECSSEEE-EEBT------TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred eEcCCC-CceEEEecccCCEEE-EEeC------CCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCC
Confidence 011111 112344578887776 3432 468999998444322 11110 1111 13489999999
Q ss_pred eEEEEec-CCC----CCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 236 NIAAVYD-RKS----ENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 236 ~IAs~s~-d~~----~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
.+..+.. +.. .+....|.+|+.. +.... .++.+ . +.+|+|||||++|+++.. + +|.+||..++.-
T Consensus 267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~--~i~~~--~-p~~ia~spdg~~l~v~n~-~---~v~v~D~~t~~l 337 (361)
T 2oiz_A 267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA--RIPGR--D-ALSMTIDQQRNLMLTLDG-G---NVNVYDISQPEP 337 (361)
T ss_dssp EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE--EEECT--T-CCEEEEETTTTEEEEECS-S---CEEEEECSSSSC
T ss_pred eEEEEEccCCCcccccCCCceEEEEECCCCcEEE--EEecC--C-eeEEEECCCCCEEEEeCC-C---eEEEEECCCCcc
Confidence 8776643 110 1123579999964 33333 23332 2 889999999999998876 4 799999988611
Q ss_pred EEEEEEEEecCCcEEEEEccCCC
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKP 332 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~ 332 (1196)
.+.+.+.-....+..+.++|+|.
T Consensus 338 ~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 338 KLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEEETTSCSSEEEEEECCCSC
T ss_pred eeeEEeccCCCCcEEEEecCCCC
Confidence 12233311112347788999874
No 192
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.23 E-value=6.2e-09 Score=118.85 Aligned_cols=223 Identities=14% Similarity=0.085 Sum_probs=147.2
Q ss_pred ceeEEeeecCCCEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
...+.+||++++.+|.+. .++.|+.|+. .++.. .. +. . ...|.+++|+|||+.++. +.+| |.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~--~~~~~--~~------~~---~--~~~v~~i~~~~dg~l~v~-~~~g-l~ 112 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHL--ASGRK--TV------HA---L--PFMGSALAKISDSKQLIA-SDDG-LF 112 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEET--TTTEE--EE------EE---C--SSCEEEEEEEETTEEEEE-ETTE-EE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEEC--CCCcE--EE------EE---C--CCcceEEEEeCCCeEEEE-ECCC-EE
Confidence 456789999988888775 4678999998 44332 11 11 1 246899999999987764 4554 99
Q ss_pred EEECCCCeEEEeeee-----cCcEEEEEECCCCCEEEEEeC------CceEEEEeccCceeeeeecccccCccccccCcc
Q 000992 101 LHSVDGNATEVVGRV-----EGGVRFISPSPDGDLLGVTTG------FGQILVMTHDWDLLYENPLEELAEGFDVHEPEL 169 (1196)
Q Consensus 101 lw~~~~~~~e~vg~~-----~~~I~~~awSPDg~~LA~~s~------d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf 169 (1196)
+||..++++..+... ...+.+++|+|||++.+.... .+.|..++ +... .. +...
T Consensus 113 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~-~~--~~~~----------- 177 (326)
T 2ghs_A 113 LRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKV-TK--LFAD----------- 177 (326)
T ss_dssp EEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEE-EE--EEEE-----------
T ss_pred EEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcE-EE--eeCC-----------
Confidence 999988876543222 135899999999997765542 23444443 2211 11 1000
Q ss_pred ccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CC-cE-----EEEeccCCCceeEEEEcCCCCeEEEEe
Q 000992 170 SSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SG-TL-----QASSELKAFMGAVLEWMPSGANIAAVY 241 (1196)
Q Consensus 170 ~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G-~l-----~~~~e~~~~~v~slawsPdG~~IAs~s 241 (1196)
......++|+|||+++. ++. ..++.|.+|+.+ +| .+ ........+....+++.++|++.++..
T Consensus 178 ---~~~~~~i~~s~dg~~ly-v~~-----~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~ 248 (326)
T 2ghs_A 178 ---ISIPNSICFSPDGTTGY-FVD-----TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW 248 (326)
T ss_dssp ---ESSEEEEEECTTSCEEE-EEE-----TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred ---CcccCCeEEcCCCCEEE-EEE-----CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence 01346899999999776 442 135789999974 67 42 222333345668899999999877765
Q ss_pred cCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEc-cCCCeeEEEEccC
Q 000992 242 DRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWN-CMSDLLAAVVRFE 294 (1196)
Q Consensus 242 ~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWS-pDg~~LAs~~~d~ 294 (1196)
.. ..|..|+.+|.....+.++ ...+.+++|+ ||++.|.+++...
T Consensus 249 ~~------~~v~~~d~~g~~~~~i~~~---~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 249 GE------GAVDRYDTDGNHIARYEVP---GKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp TT------TEEEEECTTCCEEEEEECS---CSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CC------CEEEEECCCCCEEEEEECC---CCCcEEEEEecCCCCEEEEEecCC
Confidence 42 4699999888765554433 2468999998 9999887776554
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.22 E-value=7.8e-10 Score=140.78 Aligned_cols=247 Identities=10% Similarity=-0.004 Sum_probs=155.3
Q ss_pred ceeEEeeecCCCEEEEEeCC-----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC
Q 000992 22 ILQFSALDIEQNRLFFASSA-----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~-----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d 96 (1196)
.+...+|.+|+..|++++++ ..|+.||+ .+++.. .. .+.+ ..+.+++|||| +.|+.++.+
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl--~tg~~~-~~-----~~~~------~~~~~~~wspD-~~l~~~~~~ 228 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGV--ADGKPL-AD-----ELKW------VKFSGLAWLGN-DALLYSRFA 228 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEET--TTCCEE-EE-----EEEE------EESCCCEESTT-SEEEEEECC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEEC--CCCCCC-Cc-----cCCC------ceeccEEEECC-CEEEEEEec
Confidence 45678999999999888653 35999999 555431 11 0110 12357899999 999999877
Q ss_pred Cc--------------EEEEECCCCe---EEEeeee--cCcEEEEEECCCCCEEEEEeCCc-----eEEEEeccCceee-
Q 000992 97 GL--------------LLLHSVDGNA---TEVVGRV--EGGVRFISPSPDGDLLGVTTGFG-----QILVMTHDWDLLY- 151 (1196)
Q Consensus 97 G~--------------I~lw~~~~~~---~e~vg~~--~~~I~~~awSPDg~~LA~~s~d~-----tV~l~~~~~d~~~- 151 (1196)
+. |.+|++.++. ..+.+.. ...+..++|||||+.|++.+.++ .|.+|+.......
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 229 EPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp CC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred CcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence 65 8899987754 2233321 23589999999999999988654 6766653211000
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLE 229 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~sla 229 (1196)
...+. .+.+..... |+|||+.|+ +.+-.. ..+..|.+||..++ +.......++..+.+++
T Consensus 309 ~~~l~--------------~~~~~~~~~-~~~dg~~l~-~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~ 370 (741)
T 1yr2_A 309 VTALI--------------PDLKAQWDF-VDGVGDQLW-FVSGDG--APLKKIVRVDLSGSTPRFDTVVPESKDNLESVG 370 (741)
T ss_dssp CEEEE--------------CSSSSCEEE-EEEETTEEE-EEECTT--CTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE
T ss_pred cEEec--------------CCCCceEEE-EeccCCEEE-EEECCC--CCCCEEEEEeCCCCccccEEEecCCCCeEEEEE
Confidence 01111 111223344 459999988 444221 23578999999663 44444555555667888
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-CcceEEEEEecCCE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-EYDSVKICFFSNNH 308 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~-~~~~V~lW~~~n~~ 308 (1196)
|+ ++.++++...+. ...|.+++.+|..... +..+..+.|..++|||||+.|+...... .-.+|.+|++.+..
T Consensus 371 ~~-~~~lv~~~~~dg----~~~l~~~~~~g~~~~~--l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 371 IA-GNRLFASYIHDA----KSQVLAFDLDGKPAGA--VSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EE-BTEEEEEEEETT----EEEEEEEETTSCEEEE--CBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EE-CCEEEEEEEECC----EEEEEEEeCCCCceee--ccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88 667777777653 2445556666654433 3333456789999999999887554431 11278899887654
No 194
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.21 E-value=4.2e-09 Score=117.88 Aligned_cols=238 Identities=13% Similarity=0.121 Sum_probs=150.7
Q ss_pred ceeEEeeecCCCEEEEE--------eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC-CCEEEE
Q 000992 22 ILQFSALDIEQNRLFFA--------SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME-KEALIV 92 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~--------s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd-~~~La~ 92 (1196)
.+.+++||+++. +|++ +.++.|+.|+. .+++.. .+. .+.. .+. ...+.+++++|+ |+.+ +
T Consensus 19 ~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~--~~g~~~-~~~-~~~~-~~~----~~~~~~i~~~~~~g~l~-v 87 (314)
T 1pjx_A 19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDL--KTGKKT-VIC-KPEV-NGY----GGIPAGCQCDRDANQLF-V 87 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECT--TTCCEE-EEE-CCEE-TTE----ECCEEEEEECSSSSEEE-E
T ss_pred CccCceECCCCC-EEEEEeccccCCCCCCEEEEEeC--CCCcEE-EEE-eccc-CCC----CCCCceEEEecCCCcEE-E
Confidence 567899998775 5555 55778999997 343321 111 0000 001 256899999999 6544 4
Q ss_pred EECCCcEEEEECCCCeEEEe--e----eecCcEEEEEECCCCCEEEEEeCC---------------ceEEEEeccCceee
Q 000992 93 GTSSGLLLLHSVDGNATEVV--G----RVEGGVRFISPSPDGDLLGVTTGF---------------GQILVMTHDWDLLY 151 (1196)
Q Consensus 93 as~dG~I~lw~~~~~~~e~v--g----~~~~~I~~~awSPDg~~LA~~s~d---------------~tV~l~~~~~d~~~ 151 (1196)
++..+.|..||.+ +++..+ . .....+.+++++|||++.++.+.+ +.|..++......
T Consensus 88 ~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~- 165 (314)
T 1pjx_A 88 ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI- 165 (314)
T ss_dssp EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE-
T ss_pred EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEE-
Confidence 5555579999998 666543 1 112358899999999988776655 4565554332211
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEc----cCCceEEEeeccccccCCCCEEEEEECC-CCcEE-----EEeccC
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWR----GDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQ-----ASSELK 221 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWs----pDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~-----~~~e~~ 221 (1196)
.. .. +......++|+ |||+++. ++. ..++.|.+|+.. +|++. .....+
T Consensus 166 ~~-~~---------------~~~~~~~i~~~~~~d~dg~~l~-v~~-----~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 166 QV-DT---------------AFQFPNGIAVRHMNDGRPYQLI-VAE-----TPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp EE-EE---------------EESSEEEEEEEECTTSCEEEEE-EEE-----TTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred Ee-cc---------------CCCCcceEEEecccCCCCCEEE-EEE-----CCCCeEEEEECCCCCccccceEEEECCCC
Confidence 10 00 00234689999 9997655 342 135789999974 56532 222223
Q ss_pred C-CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEcc-CCcce
Q 000992 222 A-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRF-EEYDS 298 (1196)
Q Consensus 222 ~-~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d-~~~~~ 298 (1196)
. +....+++.|+|++.++...+ ..|..|+.+ |.....+.++ ...+.+++|+|||+.|.++... + .
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~------~~i~~~d~~~g~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~~~---~ 291 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGS------SHIEVFGPDGGQPKMRIRCP---FEKPSNLHFKPQTKTIFVTEHENN---A 291 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETT------TEEEEECTTCBSCSEEEECS---SSCEEEEEECTTSSEEEEEETTTT---E
T ss_pred CCCCCCceEECCCCCEEEEEcCC------CEEEEEcCCCCcEeEEEeCC---CCCceeEEECCCCCEEEEEeCCCC---e
Confidence 2 557889999999988876543 469999987 6554443332 2468999999999967666554 3 5
Q ss_pred EEEEEecC
Q 000992 299 VKICFFSN 306 (1196)
Q Consensus 299 V~lW~~~n 306 (1196)
|..|+...
T Consensus 292 l~~~~~~~ 299 (314)
T 1pjx_A 292 VWKFEWQR 299 (314)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 77777653
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.20 E-value=8.4e-08 Score=105.97 Aligned_cols=267 Identities=12% Similarity=0.009 Sum_probs=173.7
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.++++|+++. +|+++. ++.|..|+. . +.. ....++ .+...+.++++.|+|...++...+|.|.
T Consensus 16 ~~~~i~~d~~g~-l~v~~~~~~~v~~~d~--~-~~~--~~~~~~--------~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 81 (299)
T 2z2n_A 16 GPYGITVSDKGK-VWITQHKANMISCINL--D-GKI--TEYPLP--------TPDAKVMCLTISSDGEVWFTENAANKIG 81 (299)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECT--T-CCE--EEEECS--------STTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CccceEECCCCC-EEEEecCCCcEEEEcC--C-CCe--EEecCC--------cccCceeeEEECCCCCEEEeCCCCCeEE
Confidence 688999999887 566654 678999998 4 332 111011 0135799999999999887766688999
Q ss_pred EEECCCCeEEEee--eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
.|+.++ ...... .....+.+++++|||.+.++.+.++.|..++.+... ...... ........
T Consensus 82 ~~~~~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~-~~~~~~--------------~~~~~~~~ 145 (299)
T 2z2n_A 82 RITKKG-IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKI-REYELP--------------NKGSYPSF 145 (299)
T ss_dssp EECTTS-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEECS--------------STTCCEEE
T ss_pred EECCCC-cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCE-EEecCC--------------CCCCCCce
Confidence 999874 443222 123568999999999988877777888877543221 111111 11235689
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+++.+||..++ +.. ..+.|.+||. +|+.... ..........+++.|+|++.++... ...|..|+.
T Consensus 146 i~~~~~g~l~v-~~~------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~ 211 (299)
T 2z2n_A 146 ITLGSDNALWF-TEN------QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII------GNKIGRITT 211 (299)
T ss_dssp EEECTTSCEEE-EET------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT
T ss_pred EEEcCCCCEEE-EeC------CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC------CceEEEECC
Confidence 99999998877 343 3478999999 8887654 2223345689999999998776543 246888998
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec--CCcEEEEEccCCCceE
Q 000992 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR--RDGIRFMWHPTKPLQL 335 (1196)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~--~~~~~v~Wsp~~~~~L 335 (1196)
+|... .+.++. ....+..|+++|+|++.++...++ .|..|+.. ... ..+.... ..+..+.+ +++. |
T Consensus 212 ~g~~~-~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~---~i~~~d~~-g~~---~~~~~~~~~~~~~~i~~-~~g~--l 279 (299)
T 2z2n_A 212 SGEIT-EFKIPT-PNARPHAITAGAGIDLWFTEWGAN---KIGRLTSN-NII---EEYPIQIKSAEPHGICF-DGET--I 279 (299)
T ss_dssp TCCEE-EEECSS-TTCCEEEEEECSTTCEEEEETTTT---EEEEEETT-TEE---EEEECSSSSCCEEEEEE-CSSC--E
T ss_pred CCcEE-EEECCC-CCCCceeEEECCCCCEEEeccCCc---eEEEECCC-Cce---EEEeCCCCCCccceEEe-cCCC--E
Confidence 76543 233332 234689999999999777664555 69999974 321 1222211 12356666 5553 4
Q ss_pred EEEecCCcE
Q 000992 336 ICWTLDGQI 344 (1196)
Q Consensus 336 ~~~~~~g~~ 344 (1196)
.+.+..+.+
T Consensus 280 ~v~~~~~~l 288 (299)
T 2z2n_A 280 WFAMECDKI 288 (299)
T ss_dssp EEEETTTEE
T ss_pred EEEecCCcE
Confidence 555444444
No 196
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.18 E-value=4.3e-10 Score=142.08 Aligned_cols=229 Identities=11% Similarity=0.004 Sum_probs=139.0
Q ss_pred CEEEEEEccCCCEEEEEEC-C----CcEEEEECCCCeEEEeeeecCc-EEEEEECCCCCEEEEEeCCce-----------
Q 000992 77 SITAFDYLMEKEALIVGTS-S----GLLLLHSVDGNATEVVGRVEGG-VRFISPSPDGDLLGVTTGFGQ----------- 139 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~-d----G~I~lw~~~~~~~e~vg~~~~~-I~~~awSPDg~~LA~~s~d~t----------- 139 (1196)
.+.+++|||||+.||.+.. + .+|++||+.|++.... ...+. ...++|| ||+.|+.++.++.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~ 207 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ 207 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence 6888999999999996542 2 4699999999875321 11221 3578999 9999999998743
Q ss_pred --EEEEeccCceeeeeecccccCccccccCcccc-CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC--cE
Q 000992 140 --ILVMTHDWDLLYENPLEELAEGFDVHEPELSS-SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--TL 214 (1196)
Q Consensus 140 --V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~-~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G--~l 214 (1196)
|.+|...-.......+... .. ++.....++|||||++++ ++.... .....|++||..++ +.
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~-----------~~~~~~~~~~~~~SpDg~~l~-~~~~~~--~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGA-----------IPAQHHRYVGATVTEDDRFLL-ISAANS--TSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESC-----------SGGGCCSEEEEEECTTSCEEE-EEEESS--SSCCEEEEEETTSTTCCC
T ss_pred cEEEEEECCCCcccceEEEec-----------CCCCCeEEEEEEEcCCCCEEE-EEEccC--CCCcEEEEEECCCCCCce
Confidence 5555422111100111111 01 233568899999999997 443221 13468999998655 44
Q ss_pred EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeE---EEEEeccCCCCcEEEEEEccCCCeeEEEE
Q 000992 215 QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER---SSFDINEQIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 215 ~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~---~~f~l~~~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
..... ........ |+|+|..|+..+... .....|..++.++... ..+ ++ +...+. .|+|+|+.|+...
T Consensus 274 ~~l~~-~~~~~~~~-~~~~g~~l~~~t~~~--~~~~~l~~~d~~~~~~~~~~~l-~~--~~~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 274 LTVQG-DLDADVSL-VDNKGSTLYLLTNRD--APNRRLVTVDAANPGPAHWRDL-IP--ERQQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp EEEEC-SSSSCEEE-EEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEE-EC--CCSSCE--EEEEETTEEEEEE
T ss_pred EEEeC-CCCceEEE-EeccCCEEEEEECCC--CCCCEEEEEeCCCCCccccEEE-ec--CCCCEE--EEEEECCEEEEEE
Confidence 44333 33333443 888888777665432 1246788888654221 222 22 222343 9999999998887
Q ss_pred ccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCc
Q 000992 292 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1196)
.+.....|++|+..... .+.+.++.... ..+.|+|++..
T Consensus 345 ~~~g~~~l~~~d~~g~~---~~~l~~p~~~~~~~~~~~~d~~~ 384 (693)
T 3iuj_A 345 MVDATARVEQFDYEGKR---VREVALPGLGSVSGFNGKHDDPA 384 (693)
T ss_dssp EETTEEEEEEECTTSCE---EEEECCSSSSEEEECCCCTTCSC
T ss_pred EECCeeEEEEEECCCCe---eEEeecCCCceEEeeecCCCCCE
Confidence 76544468899887542 23444433222 45667777765
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.11 E-value=1.5e-08 Score=113.17 Aligned_cols=221 Identities=17% Similarity=0.028 Sum_probs=157.3
Q ss_pred CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEE
Q 000992 32 QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEV 111 (1196)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~ 111 (1196)
++.|++.+.++.|+.||. .+++..|+... . ....+.+++++|+|+.|+ +.++.|..||+++..+-.
T Consensus 5 ~~~lv~~~~~~~v~~~d~--~tG~~~w~~~~-------~---~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~ 70 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINK--DTKEIVWEYPL-------E---KGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWN 70 (276)
T ss_dssp CEEEEECTTCSEEEEEET--TTTEEEEEEEC-------C---TTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEE
T ss_pred CcEEEeeCCCCEEEEEEC--CCCeEEEEeCC-------C---ccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEE
Confidence 567777788899999998 66766555431 0 013578999999999888 467889999995544433
Q ss_pred eeee-cCcEEEEEECCCCCEEEEEeC-CceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 112 VGRV-EGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 112 vg~~-~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
.... ...+.+++++|||++|++.++ ++.|..++.+++.+.+..+.......+ .....++..+||.+++
T Consensus 71 ~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~----------~~~~~v~~~~~G~~lv 140 (276)
T 3no2_A 71 IAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPH----------AQFRQINKNKKGNYLV 140 (276)
T ss_dssp EECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGG----------GSCSCCEECTTSCEEE
T ss_pred EcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCccc----------ccccCceECCCCCEEE
Confidence 3332 246899999999999999988 888887777777666655432110000 1224567899999998
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN 268 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~ 268 (1196)
+.+ .++.|.+||+ +|+.+.+.... +...++...|+|++++++... ..|..|++. |...-++.-.
T Consensus 141 -~~~------~~~~v~~~d~-~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~------~~v~~~d~~tG~~~w~~~~~ 205 (276)
T 3no2_A 141 -PLF------ATSEVREIAP-NGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDA------HCFVQLNLESNRIVRRVNAN 205 (276)
T ss_dssp -EET------TTTEEEEECT-TSCEEEEEECS-SCCCEEEECTTSCEEEECBTT------SEEEEECTTTCCEEEEEEGG
T ss_pred -Eec------CCCEEEEECC-CCCEEEEEECC-CCccceeEcCCCCEEEEeCCC------CeEEEEeCcCCcEEEEecCC
Confidence 454 4689999999 59999988643 445778899999999887653 468889987 8776555322
Q ss_pred c-C--CCCcEEEEEEccCCCeeEEEE
Q 000992 269 E-Q--IDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 269 ~-~--~~~~V~~laWSpDg~~LAs~~ 291 (1196)
. + .-..+..++..+||.++++..
T Consensus 206 ~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 206 DIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp GSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCCCccccccccceEcCCCCEEEEec
Confidence 1 1 113478899999999988875
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.09 E-value=8.9e-09 Score=112.69 Aligned_cols=224 Identities=7% Similarity=-0.038 Sum_probs=140.8
Q ss_pred CEEEEEEccCCCEEE-EEECCCcEEEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 77 SITAFDYLMEKEALI-VGTSSGLLLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 77 ~v~~v~~spd~~~La-~as~dG~I~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
.+.++++.|+|+..+ +.+.+|.|..|+..++....... ....+.+++++|||+++++.. ++.|..|+..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 789999999999666 43778999999987765443221 124678999999999666555 788988765443322211
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
.. .......+++.|||++++ +.. .++.|.+|+..++...............+++.|+|
T Consensus 104 ~~---------------~~~~p~~i~~~~~g~l~v-~~~------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g 161 (270)
T 1rwi_B 104 FD---------------GLNYPEGLAVDTQGAVYV-ADR------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG 161 (270)
T ss_dssp CC---------------SCSSEEEEEECTTCCEEE-EEG------GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC
T ss_pred cC---------------CcCCCcceEECCCCCEEE-EEC------CCCEEEEEECCCceeEeeccccCCCceeEEEeCCC
Confidence 11 113458899999999777 333 24789999874443332222222345889999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~ 314 (1196)
++.++.... ..|..|+.+|..... ........+..|+++|||.+.++...++ .|..|+..+... ..
T Consensus 162 ~l~v~~~~~------~~i~~~~~~~~~~~~--~~~~~~~~p~~i~~d~~g~l~v~~~~~~---~v~~~~~~~~~~---~~ 227 (270)
T 1rwi_B 162 NVYVTDTDN------NRVVKLEAESNNQVV--LPFTDITAPWGIAVDEAGTVYVTEHNTN---QVVKLLAGSTTS---TV 227 (270)
T ss_dssp CEEEEEGGG------TEEEEECTTTCCEEE--CCCSSCCSEEEEEECTTCCEEEEETTTS---CEEEECTTCSCC---EE
T ss_pred CEEEEECCC------CEEEEEecCCCceEe--ecccCCCCceEEEECCCCCEEEEECCCC---cEEEEcCCCCcc---ee
Confidence 977776542 468899987754322 1111124688999999997777766555 799999865321 11
Q ss_pred EEEec-CCcEEEEEccCCCceEEEEe
Q 000992 315 IRYLR-RDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 315 l~~~~-~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
+.... ..+..+.++|++. |.+..
T Consensus 228 ~~~~~~~~p~~i~~~~~g~--l~v~~ 251 (270)
T 1rwi_B 228 LPFTGLNTPLAVAVDSDRT--VYVAD 251 (270)
T ss_dssp CCCCSCSCEEEEEECTTCC--EEEEE
T ss_pred eccCCCCCceeEEECCCCC--EEEEE
Confidence 11111 1236788888774 44443
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.07 E-value=2e-07 Score=108.71 Aligned_cols=295 Identities=8% Similarity=-0.008 Sum_probs=159.0
Q ss_pred EccCCCEEEEEEC--CC---cEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEe----------CCceEEEEec-
Q 000992 83 YLMEKEALIVGTS--SG---LLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTT----------GFGQILVMTH- 145 (1196)
Q Consensus 83 ~spd~~~La~as~--dG---~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s----------~d~tV~l~~~- 145 (1196)
..|+++.+.++.. .+ +|.+||..++++. .+..-..+ .+++||||+.|.++. .+++|.+++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3477776666543 22 7899999887653 22110122 899999999999986 3567877753
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCc
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFM 224 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~ 224 (1196)
...++.++.+.... .+.. ...-..++|+|||++|. ++... ...+|.|+| .+|++..+ .. ..+
T Consensus 106 t~~~~~~i~~~~~~--------~~~~-g~~p~~~~~spDG~~l~-v~n~~----~~~~v~viD-~t~~~~~~~i~-~~~- 168 (373)
T 2mad_H 106 TFLPIADIELPDAP--------RFDV-GPYSWMNANTPNNADLL-FFQFA----AGPAVGLVV-QGGSSDDQLLS-SPT- 168 (373)
T ss_pred CCcEEEEEECCCcc--------cccc-CCCccceEECCCCCEEE-EEecC----CCCeEEEEE-CCCCEEeEEcC-CCc-
Confidence 34444444432000 0000 01124799999999998 65421 247899999 89998877 43 322
Q ss_pred eeEEEEcCCCCe-EEEEecCCCCCCCCeEEEEeCCCeeEEEEEe---ccCCCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 225 GAVLEWMPSGAN-IAAVYDRKSENKCPSIVFYERNGLERSSFDI---NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 225 v~slawsPdG~~-IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l---~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
++.+.|+|+. .++.+.+ ..+..++.+|........ ............+++++..++..+..+ .|.
T Consensus 169 --~~~~~~~~~~~~~~~~~d------g~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~v~ 237 (373)
T 2mad_H 169 --CYHIHPGAPSTFYLLCAQ------GGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG---KIL 237 (373)
T ss_pred --eEEEEeCCCceEEEEcCC------CCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc---eEE
Confidence 2444565543 2233332 235555543322211100 000011123466788877666555555 688
Q ss_pred EEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee------cCCCeeEEEEcCCEEEEeec
Q 000992 301 ICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA------VMENSTALVIDGSKILVTPL 374 (1196)
Q Consensus 301 lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~------~~d~~~v~viDg~~l~lt~l 374 (1196)
+.++.+........+...........|.|.+.. .+..+.+|... |+.... ....+.+.|+|..+.++.
T Consensus 238 vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~-~~~~s~d~~~l---yV~~~~~~~~~~~~~~~~V~VID~~t~~vv-- 311 (373)
T 2mad_H 238 QADISAAGATNKAPIDALSGGRKADTWRPGGWQ-QVAYLKSSDGI---YLLTSEQSAWKLHAAAKEVTSVTGLVGQTS-- 311 (373)
T ss_pred EEeccCCcceEeeeeeecCCcccccceecCceE-eEEECCCCCEE---EEEeccCCcccccCCCCeEEEEECCCCEEE--
Confidence 888764322122223221111123455665533 22233333321 111000 011346778887654331
Q ss_pred cccCCCCCceeeeecCCCCEEEEEEecCCCCC-EEEEEE-CCCcEEEEeCCCCC
Q 000992 375 SLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN-CLAAIL-SDGCLCVVDLPAPD 426 (1196)
Q Consensus 375 ~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~-~lAs~~-~dg~v~lw~~~~~~ 426 (1196)
.++......++++|+||| + .+.++. .+++|.+||..+..
T Consensus 312 -----------~~i~~g~~p~~i~~s~Dg--~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 312 -----------SQISLGHDVDAISVAQDG--GPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred -----------EEEECCCCcCeEEECCCC--CeEEEEEcCCCCeEEEEECCCCC
Confidence 223334457899999999 7 677766 48999999998643
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.07 E-value=4.7e-09 Score=117.32 Aligned_cols=184 Identities=11% Similarity=-0.004 Sum_probs=133.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEE-Eeeeec-CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccc
Q 000992 86 EKEALIVGTSSGLLLLHSVDGNATE-VVGRVE-GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFD 163 (1196)
Q Consensus 86 d~~~La~as~dG~I~lw~~~~~~~e-~vg~~~-~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~ 163 (1196)
.++.|++++.++.|.+||..++++. ....+. ..+.+++++|||++|+ +.++.|..++++++.+-+.....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~------ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPA------ 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCT------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCC------
Confidence 4578999999999999999787764 444333 3689999999999998 56778988877666555444321
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc------CCCceeEEEEcCCCCeE
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL------KAFMGAVLEWMPSGANI 237 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~------~~~~v~slawsPdG~~I 237 (1196)
...+.++.+.|||++++ +.+. .+..+..+|+ +|+++..... +......++..|+|++|
T Consensus 76 ---------~~~~~~~~~~~dG~~lv-~~~~-----~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 76 ---------GCEMQTARILPDGNALV-AWCG-----HPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYL 139 (276)
T ss_dssp ---------TCEEEEEEECTTSCEEE-EEES-----TTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred ---------CccccccEECCCCCEEE-EecC-----CCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEE
Confidence 12457889999999998 4441 1467888898 9998876541 11234567899999999
Q ss_pred EEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 238 AAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 238 As~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
++...+ ..|..|+++|...-+|... ..+.++...|+|.+|++...++ .|..++..+
T Consensus 140 v~~~~~------~~v~~~d~~G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~---~v~~~d~~t 195 (276)
T 3no2_A 140 VPLFAT------SEVREIAPNGQLLNSVKLS----GTPFSSAFLDNGDCLVACGDAH---CFVQLNLES 195 (276)
T ss_dssp EEETTT------TEEEEECTTSCEEEEEECS----SCCCEEEECTTSCEEEECBTTS---EEEEECTTT
T ss_pred EEecCC------CEEEEECCCCCEEEEEECC----CCccceeEcCCCCEEEEeCCCC---eEEEEeCcC
Confidence 987653 5799999999877665432 2456788899999998876665 566666554
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.07 E-value=7.7e-08 Score=107.99 Aligned_cols=235 Identities=8% Similarity=-0.036 Sum_probs=143.7
Q ss_pred CEEEEEEccCCC-EEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 77 SITAFDYLMEKE-ALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 77 ~v~~v~~spd~~-~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
..-+..|+|+++ .+++...++.|..|+.++++..... ....+.+++|+|||++++ ++ ++.|.+++..-..+....-
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe-CCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEe
Confidence 356788999655 4555567889999999988776544 357899999999999555 44 4567776533211111110
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc-----cCCCCEEEEEECCCCcEEEEeccCCCceeEEEE
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS-----SKLHKRLKVWERDSGTLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~-----~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaw 230 (1196)
.... ........+++.|||++++ ....... ....+.|..++. .|++...... -.....++|
T Consensus 91 ~~~~-----------~~~~~~~di~~d~dG~l~~-~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~~~~~-~~~pngi~~ 156 (297)
T 3g4e_A 91 VDND-----------KKNNRFNDGKVDPAGRYFA-GTMAEETAPAVLERHQGALYSLFP-DHHVKKYFDQ-VDISNGLDW 156 (297)
T ss_dssp CCTT-----------CSSEEEEEEEECTTSCEEE-EEEECCSBTTBCCTTCEEEEEECT-TSCEEEEEEE-ESBEEEEEE
T ss_pred cCCC-----------CCCCCCCCEEECCCCCEEE-ecCCcccccccccCCCcEEEEEEC-CCCEEEEeec-cccccceEE
Confidence 0000 0112457899999999877 3321100 001234555566 5666544332 233478999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeC---CCeeE--EEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYER---NGLER--SSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~---nGl~~--~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
+|||+.+..+... ...|..|+. +|... ..| .+. ........+++++||.+.++....+ .|..|+.
T Consensus 157 spdg~~lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~~~---~v~~~d~ 227 (297)
T 3g4e_A 157 SLDHKIFYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYNGG---RVIRLDP 227 (297)
T ss_dssp CTTSCEEEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECC-GGGCEEEEEEEBTTSCEEEEEETTT---EEEEECT
T ss_pred cCCCCEEEEecCC-----CCcEEEEeccCCCCcccCcEEEEECC-CCCCCCCeeEECCCCCEEEEEcCCC---EEEEEcC
Confidence 9999977555432 246888873 45432 112 121 1224678999999999888777666 7999998
Q ss_pred cCCEEEEEEEEEEecCCcEEEEEc-cCCCceEEEEec
Q 000992 305 SNNHWYLKYEIRYLRRDGIRFMWH-PTKPLQLICWTL 340 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~~~~~~v~Ws-p~~~~~L~~~~~ 340 (1196)
.+.. +...+..+...++++.|. |++. +|.+.+.
T Consensus 228 ~tG~--~~~~i~~p~~~~t~~~f~g~d~~-~L~vt~~ 261 (297)
T 3g4e_A 228 VTGK--RLQTVKLPVDKTTSCCFGGKNYS-EMYVTCA 261 (297)
T ss_dssp TTCC--EEEEEECSSSBEEEEEEESGGGC-EEEEEEB
T ss_pred CCce--EEEEEECCCCCceEEEEeCCCCC-EEEEEcC
Confidence 7554 234555443344888998 6654 4666654
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.05 E-value=6.9e-08 Score=107.95 Aligned_cols=237 Identities=11% Similarity=0.071 Sum_probs=145.3
Q ss_pred CCEEEEEEccCCCEEEE-------EECCCcEEEEECCCCeEEEeee-----ecCcEEEEEECCC-CCEEEEEeCCceEEE
Q 000992 76 DSITAFDYLMEKEALIV-------GTSSGLLLLHSVDGNATEVVGR-----VEGGVRFISPSPD-GDLLGVTTGFGQILV 142 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~-------as~dG~I~lw~~~~~~~e~vg~-----~~~~I~~~awSPD-g~~LA~~s~d~tV~l 142 (1196)
..+.+++|.++|+.+++ .+.+|.|..|+..++++..+.. +...+.+++|+|| |++++.... +.|..
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-CCEEE
Confidence 35789999999987777 5778999999988777653322 4567999999999 776655444 46777
Q ss_pred EeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc---------ccCCCCEEEEEECCCCc
Q 000992 143 MTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN---------SSKLHKRLKVWERDSGT 213 (1196)
Q Consensus 143 ~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~---------~~~~d~~irVWd~~~G~ 213 (1196)
|+..... .... ...... .....+..+++.+||++++ +...+. .......|..|+. .|+
T Consensus 97 ~d~~g~~-~~~~-~~~~~~---------~~~~~~~~i~~d~~g~l~v-~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~ 163 (314)
T 1pjx_A 97 VQTDGTF-EEIA-KKDSEG---------RRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQ 163 (314)
T ss_dssp EETTSCE-EECC-SBCTTS---------CBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECT-TSC
T ss_pred EeCCCCE-EEEE-eccCCC---------ccccCCcCEEECCCCCEEE-EecCcccccccccccccCCCCeEEEECC-CCC
Confidence 7654222 1110 100000 0112457899999999887 343110 0001146778888 477
Q ss_pred EEEEeccCCCceeEEEEc----CCCCeEEEEecCCCCCCCCeEEEEeC--CCeeEE--EE-EeccCCC-CcEEEEEEccC
Q 000992 214 LQASSELKAFMGAVLEWM----PSGANIAAVYDRKSENKCPSIVFYER--NGLERS--SF-DINEQID-STVELLKWNCM 283 (1196)
Q Consensus 214 l~~~~e~~~~~v~slaws----PdG~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~--~f-~l~~~~~-~~V~~laWSpD 283 (1196)
....... ......++|+ |+|+.|..+... ...|..|+. +|.... .+ .++. +. ..+..+++++|
T Consensus 164 ~~~~~~~-~~~~~~i~~~~~~d~dg~~l~v~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~p~~i~~d~~ 236 (314)
T 1pjx_A 164 MIQVDTA-FQFPNGIAVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDED 236 (314)
T ss_dssp EEEEEEE-ESSEEEEEEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTT
T ss_pred EEEeccC-CCCcceEEEecccCCCCCEEEEEECC-----CCeEEEEECCCCCccccceEEEECCC-CCCCCCCceEECCC
Confidence 6554332 2345789999 999766555432 257888874 343211 11 1111 11 45889999999
Q ss_pred CCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 284 SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 284 g~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
|.++++...++ .|..|+..+... ...+..+......+.|+|++.. |.+.+
T Consensus 237 G~l~v~~~~~~---~i~~~d~~~g~~--~~~~~~~~~~~~~i~~~~dg~~-l~v~~ 286 (314)
T 1pjx_A 237 NNLLVANWGSS---HIEVFGPDGGQP--KMRIRCPFEKPSNLHFKPQTKT-IFVTE 286 (314)
T ss_dssp CCEEEEEETTT---EEEEECTTCBSC--SEEEECSSSCEEEEEECTTSSE-EEEEE
T ss_pred CCEEEEEcCCC---EEEEEcCCCCcE--eEEEeCCCCCceeEEECCCCCE-EEEEe
Confidence 99988877666 799999874321 1223332233477888888753 55544
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.05 E-value=2.1e-07 Score=102.79 Aligned_cols=234 Identities=9% Similarity=-0.010 Sum_probs=155.1
Q ss_pred ceeEEeeecCCCEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.++++|+++. +|++ ..++.|+.|+. . +. .....++ .+...+.++++.|+|+..++...++.|.
T Consensus 58 ~~~~i~~~~~g~-l~v~~~~~~~i~~~~~--~-g~--~~~~~~~--------~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 123 (299)
T 2z2n_A 58 KVMCLTISSDGE-VWFTENAANKIGRITK--K-GI--IKEYTLP--------NPDSAPYGITEGPNGDIWFTEMNGNRIG 123 (299)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECT--T-SC--EEEEECS--------STTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred ceeeEEECCCCC-EEEeCCCCCeEEEECC--C-Cc--EEEEeCC--------CcCCCceeeEECCCCCEEEEecCCceEE
Confidence 678899999877 5555 44677999987 3 21 1111111 0135789999999998877777788999
Q ss_pred EEECCCCeEEEee--eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
.|+. +++..... .....+.+++++|||.+.++...++.|..++.+... ....+. ........
T Consensus 124 ~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~--------------~~~~~~~~ 187 (299)
T 2z2n_A 124 RITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDI-TEFKIP--------------TPASGPVG 187 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEECS--------------STTCCEEE
T ss_pred EECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcE-EEeeCC--------------CCCCccee
Confidence 9999 44443221 123568999999999988877777888777653222 111111 11134578
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+++.+||++++ +.. ..+.|.+||. +|+..... ......+.++++.|+|++.++... ...|..|+.
T Consensus 188 i~~~~~g~l~v-~~~------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~ 253 (299)
T 2z2n_A 188 ITKGNDDALWF-VEI------IGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG------ANKIGRLTS 253 (299)
T ss_dssp EEECTTSSEEE-EET------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT------TTEEEEEET
T ss_pred EEECCCCCEEE-Ecc------CCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC------CceEEEECC
Confidence 99999999777 342 3478999999 88865532 223455789999999997776533 246999998
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
+|.. ..+.++. ....+.++++ ++|++.++...++ |..++..+
T Consensus 254 ~g~~-~~~~~~~-~~~~~~~i~~-~~g~l~v~~~~~~----l~~~~~~~ 295 (299)
T 2z2n_A 254 NNII-EEYPIQI-KSAEPHGICF-DGETIWFAMECDK----IGKLTLIK 295 (299)
T ss_dssp TTEE-EEEECSS-SSCCEEEEEE-CSSCEEEEETTTE----EEEEEEC-
T ss_pred CCce-EEEeCCC-CCCccceEEe-cCCCEEEEecCCc----EEEEEcCc
Confidence 7743 2333332 2346899999 9999887765443 55555443
No 204
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.02 E-value=4e-08 Score=112.27 Aligned_cols=236 Identities=8% Similarity=0.001 Sum_probs=144.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
++.+.++.+. +++..++...+|.|.+||..++++ ..+.. ......+++||||++.++...++.|.+++. .+.....
T Consensus 43 g~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 43 GDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp BSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred CccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 3567788774 455666666789999999998765 34432 356899999999965555447889988863 3333333
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
+...... +.......+++ .+|+.++ +.. ..+++|.+||..++++..+.... .....++++|
T Consensus 121 i~~g~~~-----------~~~~~p~~i~~-~~~~lyv-~~~-----~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~ 181 (328)
T 3dsm_A 121 IECPDMD-----------MESGSTEQMVQ-YGKYVYV-NCW-----SYQNRILKIDTETDKVVDELTIG-IQPTSLVMDK 181 (328)
T ss_dssp EECTTCC-----------TTTCBCCCEEE-ETTEEEE-EEC-----TTCCEEEEEETTTTEEEEEEECS-SCBCCCEECT
T ss_pred EEcCCcc-----------ccCCCcceEEE-ECCEEEE-EcC-----CCCCEEEEEECCCCeEEEEEEcC-CCccceEEcC
Confidence 3332200 00012245677 4555555 332 12579999999889888776532 2347899999
Q ss_pred CCCeEEEEecCCCCC----CCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 233 SGANIAAVYDRKSEN----KCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~----~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
+|++.+++..+.... ....|..++.. +.....+.++ .......|+|+||++.|.++.. +|.+||..+.
T Consensus 182 dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~--~g~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~ 254 (328)
T 3dsm_A 182 YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK--LGDWPSEVQLNGTRDTLYWINN-----DIWRMPVEAD 254 (328)
T ss_dssp TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC--TTCCCEEEEECTTSCEEEEESS-----SEEEEETTCS
T ss_pred CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC--CCCCceeEEEecCCCEEEEEcc-----EEEEEECCCC
Confidence 999877765431100 02578889865 4444444332 1235889999999999988654 4889998765
Q ss_pred EEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 308 HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 308 ~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
.......+......+..+.++|++.. |.+..
T Consensus 255 ~~~~~~~~~~~~~~p~gi~vdp~~g~-lyva~ 285 (328)
T 3dsm_A 255 RVPVRPFLEFRDTKYYGLTVNPNNGE-VYVAD 285 (328)
T ss_dssp SCCSSCSBCCCSSCEEEEEECTTTCC-EEEEE
T ss_pred ceeeeeeecCCCCceEEEEEcCCCCe-EEEEc
Confidence 42100001100112367889986654 45543
No 205
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.00 E-value=4.5e-08 Score=110.30 Aligned_cols=227 Identities=9% Similarity=0.011 Sum_probs=143.8
Q ss_pred ceeEEeeecCCCEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
...+.+||++++.||++. .++.|+.|+. ..+ . .+ +.. +...+.++++.|+|+.++....++.|.
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~--~g~-~--~~------~~~----~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE--DGT-V--DV------LLD----ATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET--TSC-E--EE------EEE----SCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC--CCC-E--EE------EeC----CCCccceeeECCCCCEEEEECCCCEEE
Confidence 567899999999666664 4678999987 222 1 11 111 235789999999999766555567899
Q ss_pred EEECCCCeEE-Eeeee----cCcEEEEEECCCCCEEEE----EeC-------------CceEEEEeccCceeeeeecccc
Q 000992 101 LHSVDGNATE-VVGRV----EGGVRFISPSPDGDLLGV----TTG-------------FGQILVMTHDWDLLYENPLEEL 158 (1196)
Q Consensus 101 lw~~~~~~~e-~vg~~----~~~I~~~awSPDg~~LA~----~s~-------------d~tV~l~~~~~d~~~~~~l~~~ 158 (1196)
.|+.++ .+. ..... ...+..++++|||.+.++ ++. .+.|..++..-..+.... ..
T Consensus 111 ~~~~~g-~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~ 187 (305)
T 3dr2_A 111 RSDADG-QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL 187 (305)
T ss_dssp EECTTS-CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred EECCCC-CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence 999874 444 32221 234678999999998876 331 234544432111111111 00
Q ss_pred cCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE--Ee-ccCCCceeEEEEcCCCC
Q 000992 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA--SS-ELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~--~~-e~~~~~v~slawsPdG~ 235 (1196)
.....++|+|||++|. ++.........+.|++|+...+.+.. .+ ....+....+++.++|+
T Consensus 188 ---------------~~p~gl~~spdg~~ly-v~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~ 251 (305)
T 3dr2_A 188 ---------------DHPNGLAFSPDEQTLY-VSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW 251 (305)
T ss_dssp ---------------SSEEEEEECTTSSEEE-EEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred ---------------CCCcceEEcCCCCEEE-EEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC
Confidence 1336799999999776 44311000013689999985443211 11 11234456899999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
+.++. . ..|..|+.+|...+.+.++ . .+.+++|+||++.|.+++.++
T Consensus 252 lwv~~-~-------~gv~~~~~~g~~~~~~~~~--~--~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 252 LWSSS-G-------TGVCVFDSDGQLLGHIPTP--G--TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEECC-S-------SEEEEECTTSCEEEEEECS--S--CCCEEEECTTSCEEEEEETTE
T ss_pred EEEec-C-------CcEEEECCCCCEEEEEECC--C--ceeEEEEeCCCCEEEEEcCCe
Confidence 76654 2 2499999999877665443 2 478999999999999988765
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.00 E-value=8e-07 Score=98.08 Aligned_cols=264 Identities=12% Similarity=0.014 Sum_probs=171.3
Q ss_pred ceeEEeeecCCCEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.++++|+++. ||++. .++.|..++. . ++.. .+ .++. ....+.+|++.++|+..++...++.|.
T Consensus 21 ~p~~i~~d~~g~-l~v~~~~~~~v~~~~~--~-~~~~-~~-~~~~--------~~~~~~~i~~~~~g~l~v~~~~~~~v~ 86 (300)
T 2qc5_A 21 GPYGITSSEDGK-VWFTQHKANKISSLDQ--S-GRIK-EF-EVPT--------PDAKVMCLIVSSLGDIWFTENGANKIG 86 (300)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECT--T-SCEE-EE-ECSS--------TTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CcceeeECCCCC-EEEEcCCCCeEEEECC--C-CceE-EE-ECCC--------CCCcceeEEECCCCCEEEEecCCCeEE
Confidence 678899999876 66665 5678999998 4 3321 11 1111 125799999999998777666678899
Q ss_pred EEECCCCeEEEee--eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
.||.+ ++..... .....+.+++++|+|++.++...++.|..++..... ....+.. .......
T Consensus 87 ~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~--------------~~~~~~~ 150 (300)
T 2qc5_A 87 KLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTI-YEYDLPN--------------KGSYPAF 150 (300)
T ss_dssp EECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCE-EEEECSS--------------TTCCEEE
T ss_pred EECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCE-EEccCCC--------------CCCCcee
Confidence 99988 4444222 123568999999999988877767888877654322 2222110 1134688
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+++.+||++++ ... ..+.|.+|+. +|+...... ........+++.|+|++.++... ...|..|+.
T Consensus 151 i~~d~~g~l~v-~~~------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~ 216 (300)
T 2qc5_A 151 ITLGSDNALWF-TEN------QNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM------GNKIGRITT 216 (300)
T ss_dssp EEECTTSSEEE-EET------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT
T ss_pred EEECCCCCEEE-Eec------CCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC------CCEEEEEcC
Confidence 99999999776 332 2478999999 888765432 22345689999999998776543 246888998
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec--CCcEEEEEccCCCceE
Q 000992 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR--RDGIRFMWHPTKPLQL 335 (1196)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~--~~~~~v~Wsp~~~~~L 335 (1196)
+|.... +.++. ....+..|+++++|++.++...++ .|..|+... .. ..+.... ..+..+..++++. |
T Consensus 217 ~g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~---~i~~~~~~g-~~---~~~~~~~~~~~~~~i~~~~~g~--l 285 (300)
T 2qc5_A 217 TGEISE-YDIPT-PNARPHAITAGKNSEIWFTEWGAN---QIGRITNDN-TI---QEYQLQTENAEPHGITFGKDGS--V 285 (300)
T ss_dssp TCCEEE-EECSS-TTCCEEEEEECSTTCEEEEETTTT---EEEEECTTS-CE---EEEECCSTTCCCCCEEECTTSC--E
T ss_pred CCcEEE-EECCC-CCCCceEEEECCCCCEEEeccCCC---eEEEECCCC-cE---EEEECCccCCccceeEeCCCCC--E
Confidence 765432 33332 234688999999999766654445 699998743 22 1222221 1225567777764 4
Q ss_pred EEEec
Q 000992 336 ICWTL 340 (1196)
Q Consensus 336 ~~~~~ 340 (1196)
.+.+.
T Consensus 286 ~v~~~ 290 (300)
T 2qc5_A 286 WFALK 290 (300)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 45443
No 207
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.99 E-value=4.4e-08 Score=111.84 Aligned_cols=236 Identities=8% Similarity=-0.039 Sum_probs=145.1
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.++++| ++.+|+++. ++.|..||. .+.+.. .+++ ....+..|+++|+++..++...++.|.
T Consensus 45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~--~t~~~~---~~i~---------~~~~p~~i~~~~~g~lyv~~~~~~~v~ 108 (328)
T 3dsm_A 45 VAQSMVIR--DGIGWIVVNNSHVIFAIDI--NTFKEV---GRIT---------GFTSPRYIHFLSDEKAYVTQIWDYRIF 108 (328)
T ss_dssp CEEEEEEE--TTEEEEEEGGGTEEEEEET--TTCCEE---EEEE---------CCSSEEEEEEEETTEEEEEEBSCSEEE
T ss_pred cceEEEEE--CCEEEEEEcCCCEEEEEEC--cccEEE---EEcC---------CCCCCcEEEEeCCCeEEEEECCCCeEE
Confidence 45666664 678888866 567899998 554431 2211 124789999999995444443789999
Q ss_pred EEECCCCeEE-EeeeecC------cEEEEEECCCCCEEEEEe-CCceEEEEec-cCceeeeeecccccCccccccCcccc
Q 000992 101 LHSVDGNATE-VVGRVEG------GVRFISPSPDGDLLGVTT-GFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 101 lw~~~~~~~e-~vg~~~~------~I~~~awSPDg~~LA~~s-~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
+||..++++. .+.. .. ....+++ .++++.++.. .+++|.+++. ....+..+....
T Consensus 109 ~iD~~t~~~~~~i~~-g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-------------- 172 (328)
T 3dsm_A 109 IINPKTYEITGYIEC-PDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-------------- 172 (328)
T ss_dssp EEETTTTEEEEEEEC-TTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS--------------
T ss_pred EEECCCCeEEEEEEc-CCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC--------------
Confidence 9999998764 2221 12 4456667 4544444443 3788988763 344433333221
Q ss_pred CCCCeEEEEEccCCceEEEeeccccc----cCCCCEEEEEECCCCcEEEEeccC-CCceeEEEEcCCCCeEEEEecCCCC
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNS----SKLHKRLKVWERDSGTLQASSELK-AFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~----~~~d~~irVWd~~~G~l~~~~e~~-~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
....++++|||++++ ++..+.. ......|.+||..++++..+..-. ......++|+|||+.|.++..
T Consensus 173 ---~p~~i~~~~dG~l~v-~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---- 244 (328)
T 3dsm_A 173 ---QPTSLVMDKYNKMWT-ITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---- 244 (328)
T ss_dssp ---CBCCCEECTTSEEEE-EBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS----
T ss_pred ---CccceEEcCCCCEEE-EECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc----
Confidence 125688999999887 4431100 000268999999889887665421 235689999999998877643
Q ss_pred CCCCeEEEEeCCCeeEEEEE-eccCCCCcEEEEEEccC-CCeeEEE----EccCCcceEEEEEec
Q 000992 247 NKCPSIVFYERNGLERSSFD-INEQIDSTVELLKWNCM-SDLLAAV----VRFEEYDSVKICFFS 305 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~-l~~~~~~~V~~laWSpD-g~~LAs~----~~d~~~~~V~lW~~~ 305 (1196)
.|..|+.......... ++. .......++++|+ |.+.++. ..++ +|.+|+..
T Consensus 245 ----~v~~~d~~t~~~~~~~~~~~-~~~~p~gi~vdp~~g~lyva~~~~y~~~~---~V~v~d~~ 301 (328)
T 3dsm_A 245 ----DIWRMPVEADRVPVRPFLEF-RDTKYYGLTVNPNNGEVYVADAIDYQQQG---IVYRYSPQ 301 (328)
T ss_dssp ----SEEEEETTCSSCCSSCSBCC-CSSCEEEEEECTTTCCEEEEECTTSSSEE---EEEEECTT
T ss_pred ----EEEEEECCCCceeeeeeecC-CCCceEEEEEcCCCCeEEEEcccccccCC---EEEEECCC
Confidence 4778886432211000 111 1246889999995 5444444 2334 78888876
No 208
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.96 E-value=3.8e-08 Score=124.24 Aligned_cols=245 Identities=9% Similarity=0.024 Sum_probs=153.1
Q ss_pred ceeEEeeecCCCEEEEEeC-C----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC
Q 000992 22 ILQFSALDIEQNRLFFASS-A----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d 96 (1196)
.+.+.+|.+|+..|.++.+ . ..|+.+|+ .+++.. .. + +.+ ....+++|+ ||+.|+.++.+
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl--~tg~~~-~~-~----~~~------~k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDV--ESKQPL-ET-P----LKD------VKFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEET--TTCSEE-EE-E----EEE------EESCCCEEE-TTTEEEEEESS
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEEC--CCCCCC-cc-c----cCC------ceeccEEEe-CCCEEEEEEec
Confidence 4667899999998776633 2 36889998 555531 11 0 111 012467899 99999999988
Q ss_pred Cc-------------EEEEECCCCe---EEEeee---ecCcEEEEEECCCCCEEEEEeCC----ceEEEEeccCc--eee
Q 000992 97 GL-------------LLLHSVDGNA---TEVVGR---VEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWD--LLY 151 (1196)
Q Consensus 97 G~-------------I~lw~~~~~~---~e~vg~---~~~~I~~~awSPDg~~LA~~s~d----~tV~l~~~~~d--~~~ 151 (1196)
+. |.+|++.++. ..+... ++..+..++|||||++|++.+.. +.|.+|+.... ...
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~ 274 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL 274 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence 54 9999987743 223222 23457899999999999776532 36666653211 111
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE--EEEeccCCCceeEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL--QASSELKAFMGAVLE 229 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l--~~~~e~~~~~v~sla 229 (1196)
. +. .+.+..... |++||..|+.++..+ .....|.+|+..++.. ...+.++...+. +
T Consensus 275 ~--l~--------------~~~~~~~~~-~~~~g~~l~~~t~~~---~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~ 332 (693)
T 3iuj_A 275 T--VQ--------------GDLDADVSL-VDNKGSTLYLLTNRD---APNRRLVTVDAANPGPAHWRDLIPERQQVL--T 332 (693)
T ss_dssp E--EE--------------CSSSSCEEE-EEEETTEEEEEECTT---CTTCEEEEEETTSCCGGGCEEEECCCSSCE--E
T ss_pred E--Ee--------------CCCCceEEE-EeccCCEEEEEECCC---CCCCEEEEEeCCCCCccccEEEecCCCCEE--E
Confidence 1 11 112223343 888888777333322 1347899999966653 123334444333 9
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-CcceEEEEEecCCE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-EYDSVKICFFSNNH 308 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~-~~~~V~lW~~~n~~ 308 (1196)
|+|+|+.|+....+.. ...|.+|+.+|..... +..+..+.+..++|+||++.|+....+. .-.+|..|++.+..
T Consensus 333 ~s~~g~~lv~~~~~~g---~~~l~~~d~~g~~~~~--l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDA---TARVEQFDYEGKRVRE--VALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEETTEEEEEEEETT---EEEEEEECTTSCEEEE--ECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEECCEEEEEEEECC---eeEEEEEECCCCeeEE--eecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 9999999888776432 3578899988765443 3333445688999999999888876551 11268888776543
No 209
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.96 E-value=1.3e-07 Score=106.54 Aligned_cols=240 Identities=10% Similarity=-0.065 Sum_probs=144.5
Q ss_pred CCEEEEEEccCCC-EEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKE-ALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~-~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
....+..|+|+|+ .+++...+|.|..|+.. +....+....+.+..++|+|||++++...+++.|..|+.+... ....
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~-~~~~ 122 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQA-HLLV 122 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCCCE-EEEE
Confidence 3577899999999 56677778999999985 4455444446779999999999987766667788887654321 1111
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEe---ecccc-c------cCCCCEEEEEECCCCcEEEEeccCCCc
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL---SEFCN-S------SKLHKRLKVWERDSGTLQASSELKAFM 224 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv---ss~d~-~------~~~d~~irVWd~~~G~l~~~~e~~~~~ 224 (1196)
... .... ...+..+++.|||++++|- ++... + ....+.|..||..+|++.... . ...
T Consensus 123 -~~~-~~~~---------~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-~~~ 189 (305)
T 3dr2_A 123 -GRY-AGKR---------LNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-LDH 189 (305)
T ss_dssp -CEE-TTEE---------CSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-ESS
T ss_pred -ecc-CCCc---------cCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-CCC
Confidence 000 0111 1234679999999988721 21100 0 011356888888678766544 2 234
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEE-EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEE
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS-FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~-f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~ 303 (1196)
...++|+|||+.|..+...........|..|+.++..... ..+..........+++++||.+.++. .++ |.+|+
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g----v~~~~ 264 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG----VCVFD 264 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE----EEEEC
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc----EEEEC
Confidence 5789999999977776543100012468888754321111 11111112345679999999965554 443 99999
Q ss_pred ecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEec
Q 000992 304 FSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 304 ~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1196)
..... ...+..+ .....+.|+|++. .|.+.+.
T Consensus 265 ~~g~~---~~~~~~~-~~~~~~~f~~d~~-~L~it~~ 296 (305)
T 3dr2_A 265 SDGQL---LGHIPTP-GTASNCTFDQAQQ-RLFITGG 296 (305)
T ss_dssp TTSCE---EEEEECS-SCCCEEEECTTSC-EEEEEET
T ss_pred CCCCE---EEEEECC-CceeEEEEeCCCC-EEEEEcC
Confidence 86432 2333332 2346788987665 4666654
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.92 E-value=5.9e-07 Score=106.10 Aligned_cols=204 Identities=8% Similarity=-0.061 Sum_probs=129.2
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCc--eEEEEeccCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFG--QILVMTHDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~--tV~l~~~~~d~~~~~ 153 (1196)
..+..|+|+|+++.+++...++.|+.||.+++.+..+........ ++|+|||+.|.++..++ .|.+++........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~- 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT- 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE-
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE-
Confidence 579999999999987777778999999999887764332222233 99999999999888765 67776643211100
Q ss_pred ecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEE----eccCCCce-e-
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS----SELKAFMG-A- 226 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~----~e~~~~~v-~- 226 (1196)
.+.... . ........++++| +|.+++ +. .+++|+.||..++..... ..+..+.. .
T Consensus 209 ~~g~~~-~---------~~~~~p~~iav~p~~g~lyv--~d------~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 209 RIGQLG-S---------TFSGKIGAVALDETEEWLYF--VD------SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp EEEECC-T---------TSCSCCCBCEECTTSSEEEE--EC------TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred Eeeecc-c---------hhcCCcEEEEEeCCCCeEEE--EE------CCCcEEEEECCCCCEEEEecccccCCCCCCccc
Confidence 110000 0 0113457899999 565554 32 357899999966654333 22333333 3
Q ss_pred EEEEcCC-CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCC----------CCcEEEEEEccCCCeeEEEE-cc
Q 000992 227 VLEWMPS-GANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQI----------DSTVELLKWNCMSDLLAAVV-RF 293 (1196)
Q Consensus 227 slawsPd-G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~----------~~~V~~laWSpDg~~LAs~~-~d 293 (1196)
.++|+|+ |.+.++-+. .+.|..|+.+|......--. ... -.....|+|+|||++.++-. .+
T Consensus 271 ~ia~~p~~g~lyv~d~~------~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~ 344 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQN------LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG 344 (409)
T ss_dssp EEEEETTTTEEEEEETT------TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTT
T ss_pred cEEEeCCCCEEEEEeCC------CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCC
Confidence 9999996 555554333 36799999888633211100 000 13478999999999666654 44
Q ss_pred CCcceEEEEEecCCE
Q 000992 294 EEYDSVKICFFSNNH 308 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~ 308 (1196)
. .|+.|+..+..
T Consensus 345 ~---~I~~~~~~~G~ 356 (409)
T 3hrp_A 345 Y---CLRKLDILDGY 356 (409)
T ss_dssp C---EEEEEETTTTE
T ss_pred C---EEEEEECCCCE
Confidence 4 89999966554
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.92 E-value=5.5e-07 Score=102.63 Aligned_cols=232 Identities=9% Similarity=-0.040 Sum_probs=139.0
Q ss_pred CEEEEEEccCCCE-EEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 77 SITAFDYLMEKEA-LIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 77 ~v~~v~~spd~~~-La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
..-+..|+|+++. +.+...+|.|..|+.++++..... ....|.+++|+|||++++.. .++ |.+|+..-..+...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g~~~~~-- 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-DDG-LFLRDTATGVLTLH-- 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-TTE-EEEEETTTCCEEEE--
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-CCC-EEEEECCCCcEEEE--
Confidence 3567889998654 455567889999999988766443 35679999999999987754 444 76665321111111
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
...... .....+..+.|+|||++++ .............|..++ +|++..... .......++|+|||+
T Consensus 125 ~~~~~~---------~~~~~~~~i~~d~~G~l~v-~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~~~~~i~~s~dg~ 191 (326)
T 2ghs_A 125 AELESD---------LPGNRSNDGRMHPSGALWI-GTMGRKAETGAGSIYHVA--KGKVTKLFA-DISIPNSICFSPDGT 191 (326)
T ss_dssp ECSSTT---------CTTEEEEEEEECTTSCEEE-EEEETTCCTTCEEEEEEE--TTEEEEEEE-EESSEEEEEECTTSC
T ss_pred eeCCCC---------CCCCCCCCEEECCCCCEEE-EeCCCcCCCCceEEEEEe--CCcEEEeeC-CCcccCCeEEcCCCC
Confidence 110000 0112467899999999777 332110000123455555 566554332 223457899999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeC---CC-eeE--EEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 236 NIAAVYDRKSENKCPSIVFYER---NG-LER--SSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~---nG-l~~--~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.|..+... ...|..|+. +| ... ..| .+. .....+..+++++||.+.++...++ .|..|+... .
T Consensus 192 ~lyv~~~~-----~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~~G~lwva~~~~~---~v~~~d~~g-~ 261 (326)
T 2ghs_A 192 TGYFVDTK-----VNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEG---AVDRYDTDG-N 261 (326)
T ss_dssp EEEEEETT-----TCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTT---EEEEECTTC-C
T ss_pred EEEEEECC-----CCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECCCCCEEEEEeCCC---EEEEECCCC-C
Confidence 87666442 357888885 46 211 122 122 1224577899999999887766555 699998743 2
Q ss_pred EEEEEEEEEecCCcEEEEEc-cCCCceEEEEe
Q 000992 309 WYLKYEIRYLRRDGIRFMWH-PTKPLQLICWT 339 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Ws-p~~~~~L~~~~ 339 (1196)
+...+..+......+.|+ |++.. |.+.+
T Consensus 262 --~~~~i~~~~~~~~~~af~g~d~~~-L~vt~ 290 (326)
T 2ghs_A 262 --HIARYEVPGKQTTCPAFIGPDASR-LLVTS 290 (326)
T ss_dssp --EEEEEECSCSBEEEEEEESTTSCE-EEEEE
T ss_pred --EEEEEECCCCCcEEEEEecCCCCE-EEEEe
Confidence 223444432234778888 66543 55544
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.91 E-value=5.4e-08 Score=113.72 Aligned_cols=179 Identities=11% Similarity=0.099 Sum_probs=125.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccccc---ceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA---SIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~ 98 (1196)
.+..+++.+....+++++.++ ++.|+.....+..+ .... + ....+ +| + |..|+| |+..|+++ .+|.
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~--~--~~~~~-lp-~-V~~l~f--d~~~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLT--F--KWEKE-IP-D-VIFVCF--HGDQVLVS-TRNA 107 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC--C--SEEEE-CT-T-EEEEEE--ETTEEEEE-ESSE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccccc--c--eEEee-CC-C-eeEEEE--CCCEEEEE-cCCc
Confidence 688999999999999999887 66698741110000 0000 0 01122 22 3 999999 99999999 8899
Q ss_pred EEEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCe
Q 000992 99 LLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 99 I~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
|++||..+.. ....-.|+.+|.++.|.|.. +|+++.||+|.+|+-. +... .+. ..|
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~---~~~-----------------~~V 165 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK---QLA-----------------QNV 165 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE---EEE-----------------ESE
T ss_pred EEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc---ccc-----------------CCc
Confidence 9999987632 23344567789998888763 9999999999998732 2221 111 357
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE--EEEe------c---cCCCceeEEEEcCCCCeEEEEec
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL--QASS------E---LKAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l--~~~~------e---~~~~~v~slawsPdG~~IAs~s~ 242 (1196)
.+++|||+| ++ ++. .++++++|+.+.+++ ..+. + +++..+.+|.|.++++++++-..
T Consensus 166 s~v~WSpkG--~~-vg~------~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 166 TSFDVTNSQ--LA-VLL------KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp EEEEECSSE--EE-EEE------TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred eEEEEcCCc--eE-EEE------cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 999999999 45 444 468999999955554 4455 2 36788999999999999987554
No 213
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.89 E-value=1.1e-07 Score=123.45 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=141.5
Q ss_pred CcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHH-HHHhcChHHHHhhc--CCcHHHHHHH
Q 000992 917 DPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLM-KKYAQLFPLGLKLI--TDPAKMEQVL 993 (1196)
Q Consensus 917 DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~-~~~~~ly~~AL~L~--~d~~~~~~i~ 993 (1196)
|++....++++|.... ...-+.|...+|+|++|...|.+++. .++|++.+ ... +-|++|.+++ .+. ..++
T Consensus 1036 D~~Rv~eyI~kLd~~d-~~eIA~Iai~lglyEEAf~IYkKa~~--~~~A~~VLie~i-~nldrAiE~Aervn~---p~vW 1108 (1630)
T 1xi4_A 1036 DRTRVMEYINRLDNYD-APDIANIAISNELFEEAFAIFRKFDV--NTSAVQVLIEHI-GNLDRAYEFAERCNE---PAVW 1108 (1630)
T ss_pred ChhhHHHHHHHhhhcc-HHHHHHHHHhCCCHHHHHHHHHHcCC--HHHHHHHHHHHH-hhHHHHHHHHHhcCC---HHHH
Confidence 8888888888887654 23367899999999999999999964 78876555 477 8999999999 332 6788
Q ss_pred HHHHHHHhcccCHHHHHHHHHhCCCH---HHHHHHHHHcCCHHHHHHHH---hhcCC----------------CHHHHH-
Q 000992 994 EAWADHLSDVKCFEDAATTYFCCSSL---EKAMKAYRASGNWSGVLTVA---GLLKL----------------GKDEVA- 1050 (1196)
Q Consensus 994 ~~~A~~L~~~~~~~eAa~~y~~ag~~---~kAl~~y~~~g~w~~al~la---~~l~~----------------~~~~~~- 1050 (1196)
-.+|..+...++|++|...|++|+++ .+..++|.+.|+|++|+..- +...- .-+++.
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHH
Confidence 89999999999999999999999854 44667777778777776433 21110 001111
Q ss_pred -------HHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCch
Q 000992 1051 -------KLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107 (1196)
Q Consensus 1051 -------~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~d 1107 (1196)
.-+..+|+.|.+.|+|.+|..+|.. ++++-.+..+|++.+++++|+..+.+-+.++
T Consensus 1189 fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k-A~ny~rLA~tLvkLge~q~AIEaarKA~n~~ 1251 (1630)
T 1xi4_A 1189 FINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN-VSNFGRLASTLVHLGEYQAAVDGARKANSTR 1251 (1630)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-hhHHHHHHHHHHHhCCHHHHHHHHHHhCCHH
Confidence 1244689999999999999999999 8999999999999999999998887654443
No 214
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.89 E-value=4.2e-06 Score=92.24 Aligned_cols=223 Identities=10% Similarity=-0.035 Sum_probs=148.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEe--eeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
..+.+|++.++|+..++...+|.|..|+.. +++... +.....+.+++++|||.+.++...++.|..++..... ...
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~-~~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGF-TEY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCe-EEe
Confidence 579999999999987776678999999998 555432 2223579999999999988877667888887654322 222
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMP 232 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsP 232 (1196)
.+.. .......+++.++|++++ +.. ..+.|..||. +|+..... .........+++.|
T Consensus 98 ~~~~--------------~~~~~~~i~~~~~g~l~v-~~~------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~ 155 (300)
T 2qc5_A 98 PLPQ--------------PDSGPYGITEGLNGDIWF-TQL------NGDRIGKLTA-DGTIYEYDLPNKGSYPAFITLGS 155 (300)
T ss_dssp ECSS--------------TTCCEEEEEECSTTCEEE-EET------TTTEEEEECT-TSCEEEEECSSTTCCEEEEEECT
T ss_pred cCCC--------------CCCCCccceECCCCCEEE-Ecc------CCCeEEEECC-CCCEEEccCCCCCCCceeEEECC
Confidence 2110 113568899999999887 343 2468999999 58776432 22344578999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
+|++.++... ...|..|+.+|.... +.++.+ ...+..|+++++|.+.++....+ .|..|+... ..
T Consensus 156 ~g~l~v~~~~------~~~i~~~~~~g~~~~-~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~---~i~~~~~~g-~~--- 220 (300)
T 2qc5_A 156 DNALWFTENQ------NNSIGRITNTGKLEE-YPLPTN-AAAPVGITSGNDGALWFVEIMGN---KIGRITTTG-EI--- 220 (300)
T ss_dssp TSSEEEEETT------TTEEEEECTTCCEEE-EECSST-TCCEEEEEECTTSSEEEEETTTT---EEEEECTTC-CE---
T ss_pred CCCEEEEecC------CCeEEEECCCCcEEE-eeCCCC-CCCcceEEECCCCCEEEEccCCC---EEEEEcCCC-cE---
Confidence 9997766543 246888888765442 333322 24688999999998777655444 688888732 22
Q ss_pred EEEEEec--CCcEEEEEccCCCceEEEEe
Q 000992 313 YEIRYLR--RDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 313 q~l~~~~--~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
..+.... ..+..+.+++++. |.+.+
T Consensus 221 ~~~~~~~~~~~~~~i~~d~~g~--l~v~~ 247 (300)
T 2qc5_A 221 SEYDIPTPNARPHAITAGKNSE--IWFTE 247 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTC--EEEEE
T ss_pred EEEECCCCCCCceEEEECCCCC--EEEec
Confidence 1111111 1236778888764 45544
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.85 E-value=5.4e-07 Score=106.41 Aligned_cols=238 Identities=6% Similarity=-0.110 Sum_probs=146.6
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC--c
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG--L 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG--~ 98 (1196)
.+.++++|+++. ||++.. ++.|..|+. ..+... .+ ... ..... ++|+|+++.|.++..+| .
T Consensus 132 ~P~~la~d~~g~-lyv~d~~~~~I~~id~--~~g~~~-~~-------~~~----~~~~~-ia~~~~g~~l~~~d~~~~~~ 195 (409)
T 3hrp_A 132 YMWGIAAVGNNT-VLAYQRDDPRVRLISV--DDNKVT-TV-------HPG----FKGGK-PAVTKDKQRVYSIGWEGTHT 195 (409)
T ss_dssp CEEEEEECSTTE-EEEEETTTTEEEEEET--TTTEEE-EE-------EET----CCBCB-CEECTTSSEEEEEBSSTTCE
T ss_pred CceEEEEeCCCC-EEEEecCCCcEEEEEC--CCCEEE-Ee-------ecc----CCCCc-eeEecCCCcEEEEecCCCce
Confidence 678899998877 777754 678999998 444331 11 100 12334 89999999999888766 7
Q ss_pred EEEEECCCCeE-EEee---e-ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 99 LLLHSVDGNAT-EVVG---R-VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 99 I~lw~~~~~~~-e~vg---~-~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
|..|+..++.. ...| . ....+.+++++|++..|.++..++.|..|+............... +..
T Consensus 196 I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~-----------g~~ 264 (409)
T 3hrp_A 196 VYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS-----------GSL 264 (409)
T ss_dssp EEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC-----------SCC
T ss_pred EEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc-----------CCC
Confidence 88899876532 3332 1 235678999999544455577788888876432211111000000 001
Q ss_pred CCe--EEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC---------------CceeEEEEcCCCC
Q 000992 174 SFK--SPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA---------------FMGAVLEWMPSGA 235 (1196)
Q Consensus 174 ~~v--~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~---------------~~v~slawsPdG~ 235 (1196)
... ..++|+|+ |.+++ +.+ ..++|++|+. +|..... .+.. .....++|+|+|+
T Consensus 265 ~~~P~~~ia~~p~~g~lyv-~d~------~~~~I~~~~~-~g~~~~~-~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ 335 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYM-SDQ------NLSSVYKITP-DGECEWF-CGSATQKTVQDGLREEALFAQPNGMTVDEDGN 335 (409)
T ss_dssp CCSSCCEEEEETTTTEEEE-EET------TTTEEEEECT-TCCEEEE-EECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred CCCccccEEEeCCCCEEEE-EeC------CCCEEEEEec-CCCEEEE-EeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence 111 28999995 66555 332 4689999998 7764332 2211 2357899999999
Q ss_pred eEEEEe-cCCCCCCCCeEEEEe-CCCeeEEEEEeccC-----------CCCcEEEEEEccCCCeeEEEEccCCcceEEEE
Q 000992 236 NIAAVY-DRKSENKCPSIVFYE-RNGLERSSFDINEQ-----------IDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 236 ~IAs~s-~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~-----------~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW 302 (1196)
+.++-+ . .+.|+.|+ .+|.......-... .-.....|+++|||.++++-..+. .|+-+
T Consensus 336 lyvad~~~------~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~---~Ir~i 406 (409)
T 3hrp_A 336 FYIVDGFK------GYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK---AIRKY 406 (409)
T ss_dssp EEEEETTT------TCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTC---EEEEE
T ss_pred EEEEeCCC------CCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCC---eEEEE
Confidence 766644 3 36899999 77754321111000 013588999999998877766555 67766
Q ss_pred Ee
Q 000992 303 FF 304 (1196)
Q Consensus 303 ~~ 304 (1196)
++
T Consensus 407 ~~ 408 (409)
T 3hrp_A 407 AV 408 (409)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 216
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.84 E-value=3.9e-06 Score=97.83 Aligned_cols=262 Identities=6% Similarity=-0.133 Sum_probs=150.1
Q ss_pred eeecCCCEEEEEeC--CC---cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-------
Q 000992 27 ALDIEQNRLFFASS--AN---NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT------- 94 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~--~~---~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as------- 94 (1196)
...+++..+|++.. .. .+..+|. .+++. +.+++.+ ... .+++||||+.|.++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~--~t~~~---~~~i~~g---------~~p-~i~~spDg~~lyv~n~~~~~~~ 91 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDA--GSGSI---LGHVNGG---------FLP-NPVAAHSGSEFALASTSFSRIA 91 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEEC--CCCeE---EEEecCC---------CCC-CeEECCCCCEEEEEeccccccc
Confidence 34578888999864 32 6788888 44443 2333322 234 899999999999886
Q ss_pred ---CCCcEEEEECCCCeEE-E--ee-e--e--cCcEEEEEECCCCCEEEEEeC--CceEEEEeccCceeee-eecccccC
Q 000992 95 ---SSGLLLLHSVDGNATE-V--VG-R--V--EGGVRFISPSPDGDLLGVTTG--FGQILVMTHDWDLLYE-NPLEELAE 160 (1196)
Q Consensus 95 ---~dG~I~lw~~~~~~~e-~--vg-~--~--~~~I~~~awSPDg~~LA~~s~--d~tV~l~~~~~d~~~~-~~l~~~~~ 160 (1196)
.++.|.+||..+.+.. . ++ . . ...-..++|||||++|.++.. +++|.+++..+..+.. +...
T Consensus 92 rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD~t~~~~~~~i~~~---- 167 (373)
T 2mad_H 92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP---- 167 (373)
T ss_pred cCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEECCCCEEeEEcCCC----
Confidence 3678999999875432 1 11 0 0 012357899999999999874 4678776522333322 2211
Q ss_pred ccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec------cCCCceeEEEEcCCC
Q 000992 161 GFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE------LKAFMGAVLEWMPSG 234 (1196)
Q Consensus 161 ~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e------~~~~~v~slawsPdG 234 (1196)
.++...|+|.......+ .++++.+|+. +|+...... +.........++++|
T Consensus 168 ----------------~~~~~~~~~~~~~~~~~------~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 168 ----------------TCYHIHPGAPSTFYLLC------AQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred ----------------ceEEEEeCCCceEEEEc------CCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecC
Confidence 12445566643220122 3577888888 777663321 111122345677877
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCee---EEEEEeccC-------CCCcEEEEEEccCCCeeEEEEccC-------Ccc
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLE---RSSFDINEQ-------IDSTVELLKWNCMSDLLAAVVRFE-------EYD 297 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~---~~~f~l~~~-------~~~~V~~laWSpDg~~LAs~~~d~-------~~~ 297 (1196)
..++..+.. ..|...+..+.. ...+.+... .......++++|||+.|-++..++ +.+
T Consensus 225 ~~~~~~~~~------~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~ 298 (373)
T 2mad_H 225 GRIVWPVYS------GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK 298 (373)
T ss_pred CEEEEEcCC------ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence 665544432 245555543221 111221100 012244588999999888876532 123
Q ss_pred eEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 298 SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 298 ~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
.|.+.|..++. ....+... .....+.|+|++...+.+..
T Consensus 299 ~V~VID~~t~~--vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 299 EVTSVTGLVGQ--TSSQISLG-HDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred eEEEEECCCCE--EEEEEECC-CCcCeEEECCCCCeEEEEEc
Confidence 68899988764 23445432 22478999999875565554
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.83 E-value=4.4e-08 Score=114.43 Aligned_cols=178 Identities=12% Similarity=0.071 Sum_probs=122.2
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe---------EE--EeeeecCcEEEEEECCCCCEEEEEeCCceEEE
Q 000992 74 PGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---------TE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILV 142 (1196)
Q Consensus 74 ~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~---------~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l 142 (1196)
|...+..+++++....+++|+.+| +++|+.+... .+ ..-.+.+ |..++| ||.+|+++ .++.|.+
T Consensus 36 ~~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 36 PFASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CSSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred CcccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 345789999999999999999886 5559864311 11 1223566 999999 99999999 7789999
Q ss_pred Ee-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC
Q 000992 143 MT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1196)
Q Consensus 143 ~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~ 221 (1196)
|+ +...... ..+ .+...+.++.|.+.. || +.+ .++++.+||..++.+.. +
T Consensus 111 ~dv~sl~~~~--~~~--------------~~~~~v~~i~~~~p~--~a-v~~------~dG~L~v~dl~~~~~~~----~ 161 (388)
T 1xip_A 111 LDLEELSEFR--TVT--------------SFEKPVFQLKNVNNT--LV-ILN------SVNDLSALDLRTKSTKQ----L 161 (388)
T ss_dssp EESSSTTCEE--EEE--------------ECSSCEEEEEECSSE--EE-EEE------TTSEEEEEETTTCCEEE----E
T ss_pred EEchhhhccC--ccc--------------eeecceeeEEecCCC--EE-EEE------CCCCEEEEEccCCcccc----c
Confidence 86 3222111 111 122345677777653 66 343 47999999998787754 3
Q ss_pred CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee---EEEEEec---c---CCCCcEEEEEEccCCCeeEEEEc
Q 000992 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE---RSSFDIN---E---QIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 222 ~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~---~~~f~l~---~---~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
...+.+++|||+| ++.+..+ ++|+.|...+.. ...+..+ . .+...|.+|.|.+++++|++-..
T Consensus 162 ~~~Vs~v~WSpkG--~~vg~~d------g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 162 AQNVTSFDVTNSQ--LAVLLKD------RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp EESEEEEEECSSE--EEEEETT------SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred cCCceEEEEcCCc--eEEEEcC------CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 3468999999999 5666664 468899876654 3333211 1 13567999999999999998665
Q ss_pred c
Q 000992 293 F 293 (1196)
Q Consensus 293 d 293 (1196)
.
T Consensus 234 ~ 234 (388)
T 1xip_A 234 V 234 (388)
T ss_dssp C
T ss_pred C
Confidence 3
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.79 E-value=3.5e-07 Score=106.60 Aligned_cols=296 Identities=8% Similarity=-0.005 Sum_probs=160.4
Q ss_pred EEEEccCCCEEEEEEC-----CCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEe----------CCceEEEE
Q 000992 80 AFDYLMEKEALIVGTS-----SGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTT----------GFGQILVM 143 (1196)
Q Consensus 80 ~v~~spd~~~La~as~-----dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s----------~d~tV~l~ 143 (1196)
.....||++.+.++.. +++|.++|..++++. .+..-..+ . +++||||++|.+++ .+++|.+|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3455899999888866 689999999987653 22211233 3 99999999998775 35678888
Q ss_pred e-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 144 T-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 144 ~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
+ ....++.++.+.... .+ .....-..++++|||+++. ++... .++.|.|+|..+++...+..- .
T Consensus 115 D~~t~~v~~~I~v~~g~---r~------~~g~~P~~~a~spDGk~ly-Van~~----~~~~VsVID~~t~~vv~tI~v-~ 179 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAP---RF------LVGTYPWMTSLTPDGKTLL-FYQFS----PAPAVGVVDLEGKAFKRMLDV-P 179 (386)
T ss_dssp CTTTCCEEEEEEETTCC---CC------CBSCCGGGEEECTTSSEEE-EEECS----SSCEEEEEETTTTEEEEEEEC-C
T ss_pred ECCCCeEEEEEECCCcc---cc------ccCCCCceEEEcCCCCEEE-EEEcC----CCCeEEEEECCCCcEEEEEEC-C
Confidence 6 445555555443200 00 0001125699999999887 55421 247899999999998887642 2
Q ss_pred Cc--e------eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEE-EEEEc-cCCCeeEEEEc
Q 000992 223 FM--G------AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVE-LLKWN-CMSDLLAAVVR 292 (1196)
Q Consensus 223 ~~--v------~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~-~laWS-pDg~~LAs~~~ 292 (1196)
+. + .-++.+|||+++....... ..+.. .+. . ........+. ..+|. +||+++. .+.
T Consensus 180 g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~-----g~v~~-~~~----~---~~~~~~~~~~~~~~~~~~dG~~~~-vs~ 245 (386)
T 3sjl_D 180 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTE-----GTPEI-THT----E---VFHPEDEFLINHPAYSQKAGRLVW-PTY 245 (386)
T ss_dssp SEEEEEEEETTEEEEEETTSCEEEEECCSS-----SCCEE-EEC----C---CCSCTTSCBCSCCEEETTTTEEEE-EBT
T ss_pred CcceeecCCCceeEEECCCCCEEEEECCCC-----CeEEE-eec----c---eeccccccccccceeEcCCCcEEE-EeC
Confidence 21 0 1236667777665554321 12210 100 0 0011111222 35774 7886554 444
Q ss_pred cCCcceEEEEEecCCEEEEEEEEE-EecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee--c-CCCeeEEEEcCCE
Q 000992 293 FEEYDSVKICFFSNNHWYLKYEIR-YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA--V-MENSTALVIDGSK 368 (1196)
Q Consensus 293 d~~~~~V~lW~~~n~~wylkq~l~-~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~--~-~d~~~v~viDg~~ 368 (1196)
++ +|.+.|..+..-.....+. |.. ......|.|++.+.+.+ +.++............ . .....++|+|-.+
T Consensus 246 ~g---~V~v~d~~~~~~~v~~~~~~~~~-~~~~~g~~p~g~q~~a~-~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t 320 (386)
T 3sjl_D 246 TG---KIHQIDLSSGDAKFLPAVEALTE-AERADGWRPGGWQQVAY-HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 320 (386)
T ss_dssp TS---EEEEEECTTSSCEECCCEESSCH-HHHHTTEEECSSSCEEE-ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred CC---EEEEEECCCCcceeecceecccc-ccccccccCCCcceeeE-CCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence 55 7888888653211111111 100 00012355655443333 3333321111110000 0 1124577777655
Q ss_pred EEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCC-EEEEE-ECCCcEEEEeCCCCC
Q 000992 369 ILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN-CLAAI-LSDGCLCVVDLPAPD 426 (1196)
Q Consensus 369 l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~-~lAs~-~~dg~v~lw~~~~~~ 426 (1196)
-++. .++.....+++++||||+ + +|.+. ..+++|.++|..+..
T Consensus 321 ~kv~-------------~~i~vg~~~~~lavs~D~--~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 321 GERL-------------AKFEMGHEIDSINVSQDE--KPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp CCEE-------------EEEEEEEEECEEEECSSS--SCEEEEEETTTTEEEEEETTTCC
T ss_pred CeEE-------------EEEECCCCcceEEECCCC--CeEEEEEcCCCCeEEEEECCCCc
Confidence 3221 223334467899999999 5 56554 448999999997643
No 219
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.76 E-value=6.1e-07 Score=116.45 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=118.1
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcCCC-cHHHHHHHHHHHhcChHHHHhhc------------------------------
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMGDS-YHADCLNLMKKYAQLFPLGLKLI------------------------------ 983 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g~~-~~~~ale~~~~~~~ly~~AL~L~------------------------------ 983 (1196)
.+.++.-.-.|+|++|+..|.+++.. .+.+..+...+. +.|++|++.+
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~l-GkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTS-GNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHH
Confidence 44445556678899999888888631 223344444555 5555555444
Q ss_pred ---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000992 984 ---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEEL 1060 (1196)
Q Consensus 984 ---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L 1060 (1196)
.++ .... +..+|+++++.++|++|..+|.++++|.++..+|.+.|++++|+..+++-+ +.+-+ .+.+..+
T Consensus 1188 ~fI~~~-n~ad-~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~-n~~aW----kev~~ac 1260 (1630)
T 1xi4_A 1188 EFINGP-NNAH-IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN-STRTW----KEVCFAC 1260 (1630)
T ss_pred HHHhCC-CHHH-HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhC-CHHHH----HHHHHHH
Confidence 111 1122 446999999999999999999999999999999999999999999998864 43333 4556667
Q ss_pred HHcCChHHHHHHHHH---hcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1061 QALGKPGEAAKIALD---YCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1061 ~~~~~~~eAa~i~~~---yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+.|+|..|-.+.+. +.+..++++..|-+.+.|+||+++.++
T Consensus 1261 ve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred hhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 778889998888755 124677999999999999999998865
No 220
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.73 E-value=1.4e-06 Score=101.39 Aligned_cols=256 Identities=9% Similarity=0.009 Sum_probs=153.7
Q ss_pred ceeEEeeecCCCEEEEEeC-----CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE--
Q 000992 22 ILQFSALDIEQNRLFFASS-----ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-- 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-----~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-- 94 (1196)
.......++++..+|+.+. ++.+..+|. .+++. +.+++.+ .... +++||||+.|.++.
T Consensus 34 ~~~~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~--~t~~v---~~~I~vG---------~~P~-va~spDG~~lyVan~~ 98 (386)
T 3sjl_D 34 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDG--EAGRV---IGMIDGG---------FLPN-PVVADDGSFIAHASTV 98 (386)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEET--TTTEE---EEEEEEC---------SSCE-EEECTTSSCEEEEEEE
T ss_pred cceeeccCCCCCEEEEEcCcccCCCCEEEEEEC--CCCeE---EEEEECC---------CCCc-EEECCCCCEEEEEccc
Confidence 3444566899999999965 567999998 55554 2333333 2333 99999999998876
Q ss_pred --------CCCcEEEEECCCCeEE-Ee--ee-----ecCcEEEEEECCCCCEEEEEeC--CceEEEEe-ccCceeeeeec
Q 000992 95 --------SSGLLLLHSVDGNATE-VV--GR-----VEGGVRFISPSPDGDLLGVTTG--FGQILVMT-HDWDLLYENPL 155 (1196)
Q Consensus 95 --------~dG~I~lw~~~~~~~e-~v--g~-----~~~~I~~~awSPDg~~LA~~s~--d~tV~l~~-~~~d~~~~~~l 155 (1196)
.++.|.+||..+.++. .+ +. ....-..+++||||++|.++.. +++|.+++ ..+..+.++.+
T Consensus 99 ~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 99 FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp EEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred ccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence 3678999999987542 22 11 0012346899999999988863 67888876 45555555543
Q ss_pred ccc----c-----------Ccccc--c-c----------CccccCCCCe-EEEEE-ccCCceEEEeeccccccCCCCEEE
Q 000992 156 EEL----A-----------EGFDV--H-E----------PELSSSFSFK-SPISW-RGDGKYFATLSEFCNSSKLHKRLK 205 (1196)
Q Consensus 156 ~~~----~-----------~~~~V--s-~----------tqf~~~~~~v-~~isW-spDG~~lAsvss~d~~~~~d~~ir 205 (1196)
... + +++.+ + . ..|......+ ...+| ++||+++. ++. .+++.
T Consensus 179 ~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~-------~g~V~ 250 (386)
T 3sjl_D 179 PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTY-------TGKIH 250 (386)
T ss_dssp CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBT-------TSEEE
T ss_pred CCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeC-------CCEEE
Confidence 110 0 11111 1 0 0111111112 22567 47887544 343 36899
Q ss_pred EEECCCCcEEEEeccC-------------CCceeEEEEcCCCCeEEEEecCC----CCCCCCeEEEEeC-CCeeEEEEEe
Q 000992 206 VWERDSGTLQASSELK-------------AFMGAVLEWMPSGANIAAVYDRK----SENKCPSIVFYER-NGLERSSFDI 267 (1196)
Q Consensus 206 VWd~~~G~l~~~~e~~-------------~~~v~slawsPdG~~IAs~s~d~----~~~~~~~V~~~e~-nGl~~~~f~l 267 (1196)
+.|..++. .....+. .+....++++|+|+.+..+..+. +......|.++|. .+.....+.+
T Consensus 251 v~d~~~~~-~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v 329 (386)
T 3sjl_D 251 QIDLSSGD-AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM 329 (386)
T ss_dssp EEECTTSS-CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEECCCCc-ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC
Confidence 99984332 2211111 12235688899999887764311 1111356888885 4555454433
Q ss_pred ccCCCCcEEEEEEccCCC-eeEEEEc-cCCcceEEEEEecCCE
Q 000992 268 NEQIDSTVELLKWNCMSD-LLAAVVR-FEEYDSVKICFFSNNH 308 (1196)
Q Consensus 268 ~~~~~~~V~~laWSpDg~-~LAs~~~-d~~~~~V~lW~~~n~~ 308 (1196)
. ..+++|++||||+ +|.+... ++ +|-++|..+++
T Consensus 330 g----~~~~~lavs~D~~~~ly~tn~~~~---~VsViD~~t~k 365 (386)
T 3sjl_D 330 G----HEIDSINVSQDEKPLLYALSTGDK---TLYIHDAESGE 365 (386)
T ss_dssp E----EEECEEEECSSSSCEEEEEETTTT---EEEEEETTTCC
T ss_pred C----CCcceEEECCCCCeEEEEEcCCCC---eEEEEECCCCc
Confidence 2 3588999999997 5665543 44 89999998875
No 221
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.72 E-value=4.9e-07 Score=106.93 Aligned_cols=291 Identities=8% Similarity=0.015 Sum_probs=159.4
Q ss_pred cCCCEEEEEECC-----CcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEe----------CCceEEEEe-c
Q 000992 85 MEKEALIVGTSS-----GLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTT----------GFGQILVMT-H 145 (1196)
Q Consensus 85 pd~~~La~as~d-----G~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s----------~d~tV~l~~-~ 145 (1196)
|+++.+.++... |+|.++|..++++. -+|. .+ .+++||||++|.++. .+++|.+++ .
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~--~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF--LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS--SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC--CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 577777766553 69999999997653 2343 34 799999999998886 366788775 4
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc-
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM- 224 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~- 224 (1196)
...++.++.+.... .|. ....-..++++|||+++. ++... ..++|-|.|..+++...+..- .+.
T Consensus 158 t~~vv~~I~v~g~~--------r~~-~g~~P~~~~~spDGk~ly-V~n~~----~~~~VsVID~~t~kvv~~I~v-~g~~ 222 (426)
T 3c75_H 158 TFLPIADIELPDAP--------RFL-VGTYQWMNALTPDNKNLL-FYQFS----PAPAVGVVDLEGKTFDRMLDV-PDCY 222 (426)
T ss_dssp TCCEEEEEEETTCC--------CCC-BSCCGGGSEECTTSSEEE-EEECS----SSCEEEEEETTTTEEEEEEEC-CSEE
T ss_pred CCcEEEEEECCCcc--------ccc-cCCCcceEEEcCCCCEEE-EEecC----CCCeEEEEECCCCeEEEEEEc-CCce
Confidence 45555555542000 000 001124689999999988 66421 247899999989988877642 211
Q ss_pred -------eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcc
Q 000992 225 -------GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297 (1196)
Q Consensus 225 -------v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~ 297 (1196)
-.-++++|||+++...... ..+..-.. .. +..........+.|++||..++.....+
T Consensus 223 ~~~p~g~~~~v~~~~dG~~~~V~~~~------~~v~~~~~-----~~--~~v~~~p~~~~~~~~~dg~~~~~~s~~g--- 286 (426)
T 3c75_H 223 HIFPASPTVFYMNCRDGSLARVDFAD------GETKVTNT-----EV--FHTEDELLINHPAFSLRSGRLVWPTYTG--- 286 (426)
T ss_dssp EEEEEETTEEEEEETTSSEEEEECCT------TCCEEEEC-----CC--CSCTTSCBCSCCEECTTTCEEEEEBTTS---
T ss_pred eeccCCCcEEEEEcCCCCEEEEECCC------CcEEEEee-----ee--eccCCCceeeEeeecCCCCEEEEEeCCC---
Confidence 1226677888776655421 12211000 00 1100011122467899999888877665
Q ss_pred eEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCc-EEEEEEEEeee-c--CCCeeEEEEcCCEEEEee
Q 000992 298 SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ-ITTYNFIWTTA-V--MENSTALVIDGSKILVTP 373 (1196)
Q Consensus 298 ~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~-~~~~~~~~~~~-~--~d~~~v~viDg~~l~lt~ 373 (1196)
.|.+.|..+..-.....+...........|.|.+...+ ..+.+|. +++.... ... . .....+.|+|-.+.++.
T Consensus 287 ~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v-a~s~dg~rlyVa~~~-~~~gthk~~s~~VsVID~~T~kvv- 363 (426)
T 3c75_H 287 KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT-AYHRQSDRIYLLVDQ-RDEWKHKAASRFVVVLNAETGERI- 363 (426)
T ss_dssp EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE-EEEGGGTEEEEEEEE-CCTTCTTSCEEEEEEEETTTCCEE-
T ss_pred cEEEEeccCCceEEeeeeeeccccccccccccCCceee-EEcCCCCEEEEEecc-cccccccCCCCEEEEEECCCCeEE-
Confidence 78888876432111111111000000112333332211 1222222 1111000 000 0 01246778876553322
Q ss_pred ccccCCCCCceeeeecCCCCEEEEEEecCCCCC-EEEEEE-CCCcEEEEeCCCCCc
Q 000992 374 LSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN-CLAAIL-SDGCLCVVDLPAPDM 427 (1196)
Q Consensus 374 l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~-~lAs~~-~dg~v~lw~~~~~~~ 427 (1196)
.++......+.++|+||| + .+.+.. .+++|.++|..+...
T Consensus 364 ------------~~I~vg~~P~gia~spDg--~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 364 ------------NKIELGHEIDSINVSQDA--EPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp ------------EEEEEEEEECEEEECCSS--SCEEEEEETTTTEEEEEETTTCCE
T ss_pred ------------EEEECCCCcCeEEEccCC--CEEEEEEcCCCCeEEEEECCCCCE
Confidence 122223356899999999 7 888887 589999999986433
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.48 E-value=2.8e-05 Score=89.07 Aligned_cols=230 Identities=6% Similarity=-0.102 Sum_probs=134.8
Q ss_pred CCEEEEEEccCCCEEEEEE--CCCcEEEEECCCCeEEEee-------eecCcEEEEEECCCCCEEEEEeC-----CceEE
Q 000992 76 DSITAFDYLMEKEALIVGT--SSGLLLLHSVDGNATEVVG-------RVEGGVRFISPSPDGDLLGVTTG-----FGQIL 141 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as--~dG~I~lw~~~~~~~e~vg-------~~~~~I~~~awSPDg~~LA~~s~-----d~tV~ 141 (1196)
..+.+|+++|||+.+++.. .+|.+.||..+++++.... .+-..+..++++|||++.++-++ ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 3689999999999988764 3453555554344443211 12357999999999987776655 56888
Q ss_pred EEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 142 VMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 142 l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
+|+. ....+....+.... . .+......+++++++ ..++ +.+.. ..+..|.+||..+|+......
T Consensus 97 ~~d~~tg~~~~~~~~~~~~-~---------~~~~~~~~v~vd~~~g~~yv-td~~~---~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPI-T---------LSNSFVNDLAVDLIHNFVYI-SDPAP---DDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp EEETTTTEEEEEEECCTTT-S---------CTTCCCCEEEEETTTTEEEE-EECCS---GGGCEEEEEETTTCCEEEECT
T ss_pred EEECCCCeEEEEEECChhh-c---------ccccccceEEEecCCCEEEE-EcCcc---CCCCeEEEEECCCCCEEEEec
Confidence 8763 34434433332110 0 111234789999864 4444 22100 035789999997888777654
Q ss_pred cCC-----------------------------CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC----CCeeE-E--
Q 000992 220 LKA-----------------------------FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER----NGLER-S-- 263 (1196)
Q Consensus 220 ~~~-----------------------------~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~----nGl~~-~-- 263 (1196)
++. .....|+|+|||+.+..+.... ..|.-++. ++... +
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~-----~~l~~~~~~~~~~~~~~~~~~ 237 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS-----TSMYRIKSADLSNLQLTDAEL 237 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC-----SEEEEEEHHHHTCTTCCHHHH
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC-----CeEEEEEHHHhcCCCCChhhh
Confidence 311 1247899999999888876542 24433331 11100 0
Q ss_pred --EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec--CCcEEEEEccCC
Q 000992 264 --SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR--RDGIRFMWHPTK 331 (1196)
Q Consensus 264 --~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~--~~~~~v~Wsp~~ 331 (1196)
.+.... .......+++++||.+.++...++ .|..|+..+... ..+...+ ..+..+++++++
T Consensus 238 ~~~~~~~g-~~g~pdgia~d~~G~l~va~~~~~---~V~~~d~~~G~~---~~~~~~~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 238 GSKIERYS-EKPICDGISIDKDHNIYVGDLAHS---AIGVITSADRAY---KLLVTDEKLSWTDSFNFGSDG 302 (343)
T ss_dssp HTTCEEEE-ECCSCSCEEECTTCCEEEEEGGGT---EEEEEETTTTEE---EEEEECGGGSCEEEEEECTTS
T ss_pred hcceEecc-cCCCCceEEECCCCCEEEEccCCC---eEEEEECCCCCE---EEEEECCceecCCeeEECCCC
Confidence 000000 012345799999999888877776 899999844432 1222221 123677777765
No 223
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.43 E-value=7.3e-05 Score=84.50 Aligned_cols=252 Identities=10% Similarity=0.044 Sum_probs=141.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeecccccccc---------ccCCC-CCCEEEEEEccCCCEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEH---------IDLEP-GDSITAFDYLMEKEALI 91 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~-~~~v~~v~~spd~~~La 91 (1196)
.+.+++||+++..+|+...++.|+.|+. ..+... ... .+..... ....+ ...+.+|++.++...|.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~--~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEG--PNSGFV-DFA-YASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECC--TTTCEE-EEE-ESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECC--CCCceE-EEe-cccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 4678999999888998888888999987 333221 010 0000000 00000 13689999998333455
Q ss_pred EEECCCcEEEEECCCCeEEEeeee-----cCcEEEEEECC-CCCEEEEEeC-----------------CceEEEEeccCc
Q 000992 92 VGTSSGLLLLHSVDGNATEVVGRV-----EGGVRFISPSP-DGDLLGVTTG-----------------FGQILVMTHDWD 148 (1196)
Q Consensus 92 ~as~dG~I~lw~~~~~~~e~vg~~-----~~~I~~~awSP-Dg~~LA~~s~-----------------d~tV~l~~~~~d 148 (1196)
++...+.|..++.+++.++.+... -.....+++.| ||.+.++-.. ++.|..++....
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 565555588899887655433211 13478899999 9987766433 245555442211
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC---CcEEEEeccCCCce
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS---GTLQASSELKAFMG 225 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~---G~l~~~~e~~~~~v 225 (1196)
..... .... ..-..|+|+|||+++. ++. ...+.|.+|+... |....... ..+ .
T Consensus 176 ~~~~~-~~~~---------------~~p~gia~~~dg~~ly-v~d-----~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P 231 (322)
T 2fp8_A 176 ETTLL-LKEL---------------HVPGGAEVSADSSFVL-VAE-----FLSHQIVKYWLEGPKKGTAEVLVK-IPN-P 231 (322)
T ss_dssp EEEEE-EEEE---------------SCCCEEEECTTSSEEE-EEE-----GGGTEEEEEESSSTTTTCEEEEEE-CSS-E
T ss_pred EEEEe-ccCC---------------ccCcceEECCCCCEEE-EEe-----CCCCeEEEEECCCCcCCccceEEe-CCC-C
Confidence 11100 0000 1125799999998655 442 1347899998843 22221111 234 6
Q ss_pred eEEEEcCCCCeEEEEecCCCC----CCCCeEEEEeCCCeeEEEEEeccCC-CCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 226 AVLEWMPSGANIAAVYDRKSE----NKCPSIVFYERNGLERSSFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~----~~~~~V~~~e~nGl~~~~f~l~~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
..+++.|+|++.++....... .....|..++.+|.....+..+... -..+..+++ .+|++..+..... .|.
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~---~i~ 307 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG---SVG 307 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS---EEE
T ss_pred CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCC---ceE
Confidence 789999999977665431000 0013577888888776655544211 134666666 4565544443343 577
Q ss_pred EEEec
Q 000992 301 ICFFS 305 (1196)
Q Consensus 301 lW~~~ 305 (1196)
.++..
T Consensus 308 ~~~~~ 312 (322)
T 2fp8_A 308 ILVYD 312 (322)
T ss_dssp EEEC-
T ss_pred EEecc
Confidence 77655
No 224
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.43 E-value=3.3e-07 Score=107.80 Aligned_cols=232 Identities=13% Similarity=0.084 Sum_probs=104.3
Q ss_pred HHHHHHHhccChhHHHHHHHHhcCCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHH-----
Q 000992 893 AVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLN----- 967 (1196)
Q Consensus 893 ~Ly~~ALg~yD~~lal~vAq~sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale----- 967 (1196)
.|.+.+|..-+++-|+..-.++ .||.-|.-- .+.++ .+|+|++|++.|..+-+...+.+++
T Consensus 37 ~La~A~l~~g~~~eAIdsfika-~D~~~y~~V----------~~~ae---~~g~~EeAi~yl~~ark~~~~~~i~~~Li~ 102 (449)
T 1b89_A 37 QLAKAQLQKGMVKEAIDSYIKA-DDPSSYMEV----------VQAAN---TSGNWEELVKYLQMARKKARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHcC-CCHHHHHHH----------HHHHH---hCCCHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 4555555555655543333444 455433211 11222 3899999999776554322233555
Q ss_pred HHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHH
Q 000992 968 LMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD 1047 (1196)
Q Consensus 968 ~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~ 1047 (1196)
++.+. +.|.++.+++..|.. ..+...|+.+.+.|.|++|..+|.++.++.+-.+|+.+.|+|++|+..+++.+ +..
T Consensus 103 ~Y~Kl-g~l~e~e~f~~~pn~--~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~-~~~ 178 (449)
T 1b89_A 103 ALAKT-NRLAELEEFINGPNN--AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN-STR 178 (449)
T ss_dssp -------CHHHHTTTTTCC------------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT-CHH
T ss_pred HHHHh-CCHHHHHHHHcCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcC-Cch
Confidence 88999 999999999833422 38889999999999999999999999999999999999999999999999875 433
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHh---cCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHH
Q 000992 1048 EVAKLAQELCEELQALGKPGEAAKIALDY---CGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASLECASSL 1123 (1196)
Q Consensus 1048 ~~~~l~~~la~~L~~~~~~~eAa~i~~~y---l~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~-v~~~l~e~~~~~ 1123 (1196)
.-..+...+...|++..|..+.+.- ..+.++++.+|-+.++|+||+.+.++--..|---. +-..|.-...-.
T Consensus 179 ----~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 179 ----TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred ----hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 3355677788899999997776552 23456788899999999999988776432221001 222232111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1124 IGEYKEGLEKVGKYLTRYLAVRQRR 1148 (1196)
Q Consensus 1124 ~e~l~~~~~~~~~~~~Rl~~lR~~k 1148 (1196)
..+.+.+-++.|.+|+..=+..|
T Consensus 255 --~p~k~~ehl~~~~~~ini~k~~~ 277 (449)
T 1b89_A 255 --KPQKMREHLELFWSRVNIPKVLR 277 (449)
T ss_dssp --CHHHHHHHHHHHSTTSCHHHHHH
T ss_pred --CHHHHHHHHHHHHHHhcCcHHHH
Confidence 12344555566667765555333
No 225
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.43 E-value=1.4e-05 Score=94.45 Aligned_cols=245 Identities=9% Similarity=0.040 Sum_probs=143.7
Q ss_pred ceeEEeeecCCCEEEEEe----------CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEE
Q 000992 22 ILQFSALDIEQNRLFFAS----------SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI 91 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s----------~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La 91 (1196)
.. .+++++|+..||+++ .++.|..+|. .+.+..-.|. ++.. . .+..+..+..+.|+|||+.|.
T Consensus 120 ~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~--~t~~vv~~I~-v~g~-~--r~~~g~~P~~~~~spDGk~ly 192 (426)
T 3c75_H 120 LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP--VTFLPIADIE-LPDA-P--RFLVGTYQWMNALTPDNKNLL 192 (426)
T ss_dssp SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT--TTCCEEEEEE-ETTC-C--CCCBSCCGGGSEECTTSSEEE
T ss_pred CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC--CCCcEEEEEE-CCCc-c--ccccCCCcceEEEcCCCCEEE
Confidence 45 899999999999997 3556888998 5554422221 1100 0 000123456789999999999
Q ss_pred EEEC--CCcEEEEECCCCeEE-Ee--eee-----cCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCc
Q 000992 92 VGTS--SGLLLLHSVDGNATE-VV--GRV-----EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEG 161 (1196)
Q Consensus 92 ~as~--dG~I~lw~~~~~~~e-~v--g~~-----~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~ 161 (1196)
++.. +++|.++|..++++. .+ +.. .+.-..++++|||+++.+...++++.. .. . ..+.. ..
T Consensus 193 V~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~-~~-----~-~~~~v--~~ 263 (426)
T 3c75_H 193 FYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKV-TN-----T-EVFHT--ED 263 (426)
T ss_dssp EEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEE-EE-----C-CCCSC--TT
T ss_pred EEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEE-Ee-----e-eeecc--CC
Confidence 9874 578999999987642 21 111 011122567777777766665555431 10 0 00100 01
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-------------CCCceeEE
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-------------KAFMGAVL 228 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-------------~~~~v~sl 228 (1196)
.+ ....+.|++||..++ ..+. .+++.+.|...+.. ..... ..+....+
T Consensus 264 ~p-----------~~~~~~~~~dg~~~~-~~s~------~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~~p~g~~~v 324 (426)
T 3c75_H 264 EL-----------LINHPAFSLRSGRLV-WPTY------TGKIFQADLTAEGA-TFRAPIEALTEAERADDWRPGGWQQT 324 (426)
T ss_dssp SC-----------BCSCCEECTTTCEEE-EEBT------TSEEEEEEECSSCE-EECCCEESSCTTTGGGTEEECSSSCE
T ss_pred Cc-----------eeeEeeecCCCCEEE-EEeC------CCcEEEEeccCCce-EEeeeeeeccccccccccccCCceee
Confidence 11 113467899998777 3432 36888888833332 21111 01112348
Q ss_pred EEcCCCCeEEEEecCCC----CCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEc-cCCcceEEE
Q 000992 229 EWMPSGANIAAVYDRKS----ENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVR-FEEYDSVKI 301 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~----~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~-d~~~~~V~l 301 (1196)
+++|||+.+..+..+.. ......|.++|.. +.....+.+. ...+.|+|+|||+ .|.+... ++ +|-+
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~spDg~~~lyv~n~~s~---~VsV 397 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQDAEPLLYALSAGTQ---TLHI 397 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTT---EEEE
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEccCCCEEEEEEcCCCC---eEEE
Confidence 99999997666532110 0112468889864 3333433222 2477999999999 8888774 55 8999
Q ss_pred EEecCCE
Q 000992 302 CFFSNNH 308 (1196)
Q Consensus 302 W~~~n~~ 308 (1196)
+|+.+++
T Consensus 398 ID~~t~k 404 (426)
T 3c75_H 398 YDAATGE 404 (426)
T ss_dssp EETTTCC
T ss_pred EECCCCC
Confidence 9999865
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.42 E-value=7.8e-06 Score=93.68 Aligned_cols=202 Identities=11% Similarity=0.033 Sum_probs=119.8
Q ss_pred ceeEEeeecCCCEEEEEeC------CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE-EEEE
Q 000992 22 ILQFSALDIEQNRLFFASS------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL-IVGT 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~L-a~as 94 (1196)
.+.++++|+++ .||++.. +..|+.||+ .+++....+ .++... ..+...+.+|++.|++..+ ++-+
T Consensus 68 ~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~--~tg~~~~~~-~~~~~~----~~~~~~~~~v~vd~~~g~~yvtd~ 139 (343)
T 2qe8_A 68 TVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDT--LNNQLSRVI-YLPPPI----TLSNSFVNDLAVDLIHNFVYISDP 139 (343)
T ss_dssp CEEEEEECSSS-EEEEEECHHHHTSCCEEEEEET--TTTEEEEEE-ECCTTT----SCTTCCCCEEEEETTTTEEEEEEC
T ss_pred EeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEEC--CCCeEEEEE-ECChhh----cccccccceEEEecCCCEEEEEcC
Confidence 67889999985 5887753 467999998 444421111 122111 1123567899999875555 4444
Q ss_pred ---CCCcEEEEECCCCeEE-Eeeee-----------------------------cCcEEEEEECCCCCEEEEEeCCceEE
Q 000992 95 ---SSGLLLLHSVDGNATE-VVGRV-----------------------------EGGVRFISPSPDGDLLGVTTGFGQIL 141 (1196)
Q Consensus 95 ---~dG~I~lw~~~~~~~e-~vg~~-----------------------------~~~I~~~awSPDg~~LA~~s~d~tV~ 141 (1196)
.++.|.+||..+++.. ....| ..++..++|||||++|.++..+++ .
T Consensus 140 ~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~ 218 (343)
T 2qe8_A 140 APDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-S 218 (343)
T ss_dssp CSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-E
T ss_pred ccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-e
Confidence 5789999999876543 22110 134789999999999998877664 3
Q ss_pred EEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-c
Q 000992 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-L 220 (1196)
Q Consensus 142 l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~ 220 (1196)
+|.-+.+.+....+....-...+ ...++......+++++||.+++ +.+ ..+.|.+||..+|++..... +
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~---~~~g~~g~pdgia~d~~G~l~v-a~~------~~~~V~~~d~~~G~~~~~~~~~ 288 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSKI---ERYSEKPICDGISIDKDHNIYV-GDL------AHSAIGVITSADRAYKLLVTDE 288 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTTC---EEEEECCSCSCEEECTTCCEEE-EEG------GGTEEEEEETTTTEEEEEEECG
T ss_pred EEEEEHHHhcCCCCChhhhhcce---EecccCCCCceEEECCCCCEEE-Ecc------CCCeEEEEECCCCCEEEEEECC
Confidence 33221111100000000000000 0001112235699999999888 443 35799999986787644432 2
Q ss_pred CCCceeEEEEcCCCCeEEEEec
Q 000992 221 KAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 221 ~~~~v~slawsPdG~~IAs~s~ 242 (1196)
.-....+++|.|+|+++++...
T Consensus 289 ~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 289 KLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp GGSCEEEEEECTTSCEEEEECC
T ss_pred ceecCCeeEECCCCcEEEEeCc
Confidence 2345689999999998877764
No 227
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.40 E-value=6.7e-06 Score=104.71 Aligned_cols=162 Identities=9% Similarity=0.019 Sum_probs=93.6
Q ss_pred CEEEEEEc-cCCCEEEEEEC-CC----cEEEEECCCC-eEEEeeeecCcEEEEEECCCCCEEEEEeCCc-----eEEEEe
Q 000992 77 SITAFDYL-MEKEALIVGTS-SG----LLLLHSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFG-----QILVMT 144 (1196)
Q Consensus 77 ~v~~v~~s-pd~~~La~as~-dG----~I~lw~~~~~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~-----tV~l~~ 144 (1196)
.+.+.+|| |||+.||.+.. +| +|.++|++++ +.. ..........++|||||+.|+.++.+. .|.++.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-CccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 57889999 99999997654 34 4999999987 521 111122234688999999999987652 344433
Q ss_pred ccCceeeeeecccccCccccccCccc-cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC--cE--EEEec
Q 000992 145 HDWDLLYENPLEELAEGFDVHEPELS-SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--TL--QASSE 219 (1196)
Q Consensus 145 ~~~d~~~~~~l~~~~~~~~Vs~tqf~-~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G--~l--~~~~e 219 (1196)
.......... | |. ........++|||||++|+ +.+.. .....|.++|..++ +. .....
T Consensus 254 lgt~~~~~~l---------v----~~~~~~~~~~~~~~SpDg~~l~-~~~~~---~~~~~l~~~d~~~~~~~~~~~~l~~ 316 (751)
T 2xe4_A 254 MGKLQSEDVC---------L----YEEHNPLFSAFMYKAADTNTLC-IGSQS---PETAEVHLLDLRKGNAHNTLEIVRP 316 (751)
T ss_dssp TTSCGGGCEE---------E----EECCCTTCEEEEEECTTSSEEE-EEEEC---SSCEEEEEEESSSCTTCCCEEESSC
T ss_pred CCCCchhcEE---------E----EecCCCceEEEEEECCCCCEEE-EEecC---CCCceEEEEECCCCCCCceeEEeec
Confidence 2111000000 0 00 1112357889999999998 44422 23467889998655 33 33333
Q ss_pred cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 220 LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 220 ~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
...+...++.|+. |+.|+..+... ......|..++.+
T Consensus 317 ~~~~~~~s~~~~~-g~~l~~~t~~~-~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 317 REKGVRYDVQMHG-TSHLVILTNEG-GAVNHKLLIAPRG 353 (751)
T ss_dssp CCTTCCEEEEEET-TTEEEEEECTT-TCTTCEEEEEETT
T ss_pred CCCCceEEEeeee-CCEEEEEeCCC-CCCCcEEEEEcCC
Confidence 3344445555543 66665555431 0124567667655
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.26 E-value=5.3e-05 Score=89.12 Aligned_cols=235 Identities=10% Similarity=0.008 Sum_probs=139.3
Q ss_pred cCCCEEEEEeC-CCcEEEEeccccccccccee-ecc-cccccc-ccCCCCCCEEEEEEccCCCEEEEEECC------CcE
Q 000992 30 IEQNRLFFASS-ANNIYSAQLSSFQNERASIK-TAI-SAEIEH-IDLEPGDSITAFDYLMEKEALIVGTSS------GLL 99 (1196)
Q Consensus 30 ~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~-~~~-~~~l~~-~~~~~~~~v~~v~~spd~~~La~as~d------G~I 99 (1196)
.++..||+.+. ++.|+.+|. .+.....++ .++ |+++.+ .. ......++.+||| .++++..+ |.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~--~t~p~~p~~~k~ie~~~~~~~~g---~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDT--KPNPREPKIIKVIEPEEVKKVSG---YSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEEC--CSCTTSCEEEEEECHHHHHHHHC---EEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCCCeEEEEEC--CCCCCCceeeeeechhhcccccC---CCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 78889998766 667999998 333222222 222 122210 00 1257788999999 76666666 789
Q ss_pred EEEECCCCeEE-Ee--eeecCc-EEEEEECCCCCEEEEEe-------------------CCceEEEEec-cCceeeeeec
Q 000992 100 LLHSVDGNATE-VV--GRVEGG-VRFISPSPDGDLLGVTT-------------------GFGQILVMTH-DWDLLYENPL 155 (1196)
Q Consensus 100 ~lw~~~~~~~e-~v--g~~~~~-I~~~awSPDg~~LA~~s-------------------~d~tV~l~~~-~~d~~~~~~l 155 (1196)
.++|..|.++. .. +....+ -..+.|+||++.+.+.. ..++|.+|+. ....+..+.+
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 99999987653 22 221111 23478999999887774 2578988863 2333333333
Q ss_pred ccccCccccccCccccCCCCeEEEE--EccCCceEEEeecc-ccccCCCCEEEEEECCCCcEEEEe----cc--C-----
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPIS--WRGDGKYFATLSEF-CNSSKLHKRLKVWERDSGTLQASS----EL--K----- 221 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~is--WspDG~~lAsvss~-d~~~~~d~~irVWd~~~G~l~~~~----e~--~----- 221 (1196)
.... ..-..|. |+|||++.- ++.. +.. ...++|-+|..+.|+..... .. .
T Consensus 247 g~~g--------------~~P~~i~f~~~Pdg~~aY-V~~e~~~~-~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp 310 (462)
T 2ece_A 247 GEEN--------------RMALELRPLHDPTKLMGF-INMVVSLK-DLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLP 310 (462)
T ss_dssp CTTE--------------EEEEEEEECSSTTCCEEE-EEEEEETT-TCCEEEEEEEEETTEEEEEEEEEECCEECCSSCC
T ss_pred CCCC--------------CccceeEeeECCCCCEEE-EEEeeecc-CCCceEEEEEecCCceeEEEEEeCCCcccccccc
Confidence 2100 0123444 499999766 5542 000 12467887776556432211 10 0
Q ss_pred ---------CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC----CeeEEEEEeccC-----------CCCcEEE
Q 000992 222 ---------AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN----GLERSSFDINEQ-----------IDSTVEL 277 (1196)
Q Consensus 222 ---------~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n----Gl~~~~f~l~~~-----------~~~~V~~ 277 (1196)
.+....|.+||||++|-++.+. ...|.+|+.. ....+...+.+. ..+.-..
T Consensus 311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg-----~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~ 385 (462)
T 2ece_A 311 EILKPFKAVPPLVTDIDISLDDKFLYLSLWG-----IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQM 385 (462)
T ss_dssp GGGGGGTEECCCCCCEEECTTSCEEEEEETT-----TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCC
T ss_pred ccccccccCCCceeEEEECCCCCEEEEEeCC-----CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCE
Confidence 2456889999999999988775 3589999853 223333222110 0013468
Q ss_pred EEEccCCCeeEEEE
Q 000992 278 LKWNCMSDLLAAVV 291 (1196)
Q Consensus 278 laWSpDg~~LAs~~ 291 (1196)
+++||||+.|.++.
T Consensus 386 ~~lSpDGk~LyVaN 399 (462)
T 2ece_A 386 LEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSSEEEEEC
T ss_pred EEEcCCCCEEEEEc
Confidence 99999999999886
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=98.25 E-value=1.6e-05 Score=81.74 Aligned_cols=100 Identities=10% Similarity=0.006 Sum_probs=71.5
Q ss_pred ccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHH
Q 000992 1003 VKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTN 1082 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~ 1082 (1196)
...|+.=+....+.|+++-|.+||.++|++..++-+....+ +.+ -+..+++.-...|++.-|..+++. +||+++
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg-~~e----~L~kla~iA~~~g~~n~af~~~l~-lGdv~~ 107 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTG-DVN----KLSKMQNIAQTREDFGSMLLNTFY-NNSTKE 107 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHT-CHH----HHHHHHHHHHHTTCHHHHHHHHHH-HTCHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhC-CHH----HHHHHHHHHHHCccHHHHHHHHHH-cCCHHH
Confidence 33444444555555666666666666666666655544433 332 234566666778999999999888 999999
Q ss_pred HHHHHHHhcCHHHHHHHHHhcCCchh
Q 000992 1083 GISLLIDARDWEEALRVAFMHRREDL 1108 (1196)
Q Consensus 1083 Ai~~y~~~~~w~eA~rla~~~~~~dL 1108 (1196)
++++|++.++|.+|...|+.|...++
T Consensus 108 ~i~lL~~~~r~~eA~~~A~t~g~~~~ 133 (177)
T 3mkq_B 108 RSSIFAEGGSLPLAYAVAKANGDEAA 133 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCChHHHHHHHHHcCcHHH
Confidence 99999999999999999999985443
No 230
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.18 E-value=0.029 Score=71.48 Aligned_cols=366 Identities=9% Similarity=-0.017 Sum_probs=204.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++..|.++ .|++++.+++++.++. .++... ... ........++...|.++...++|.. .+|+.+| |.+
T Consensus 216 ~i~~i~~d~~g-~lwigt~~~Gl~~~~~--~~~~~~-~~~---~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~G-l~~ 286 (795)
T 4a2l_A 216 QIQAILQQSPT-RIWVATEGAGLFLINP--KTKEIK-NYL---HSPSNPKSISSNYIRSLAMDSQNRL-WIGTFND-LNI 286 (795)
T ss_dssp CEEEEEEEETT-EEEEEEBSSCEEEEET--TTTEEE-EEC---CCTTCTTSCSCSBEEEEEECTTSCE-EEEESSC-EEE
T ss_pred eeEEEEEcCCC-CEEEEECCCCeEEEeC--CCCeEE-Eee---cCCCCccccCCCeEEEEEEcCCCCE-EEEeCCh-hhe
Confidence 56677778754 5888887666999998 443321 111 0000001123467999999888864 4566665 888
Q ss_pred EECCCCeEEEeee--------ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 102 HSVDGNATEVVGR--------VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 102 w~~~~~~~e~vg~--------~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
|+..++.+..... ....|.++...++|.+- +||.++-|..++............... .. -..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~--~~-------l~~ 356 (795)
T 4a2l_A 287 YHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYK--NS-------LSD 356 (795)
T ss_dssp EETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTS--SS-------CSC
T ss_pred EcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCC--CC-------CCC
Confidence 9998887764321 23569999999998765 466666677665332222111110000 00 023
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc--------CCCceeEEEEcCCCCeEEEEecCCC
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--------KAFMGAVLEWMPSGANIAAVYDRKS 245 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~--------~~~~v~slawsPdG~~IAs~s~d~~ 245 (1196)
+.|.++...++|.+.+ ++ .++-|..|+..++........ ....|.++...++|++|-.|+.+
T Consensus 357 ~~V~~i~~d~~g~lWi--Gt------~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~-- 426 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWI--GT------NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA-- 426 (795)
T ss_dssp SSEEEEEECTTSCEEE--EE------SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETT--
T ss_pred CeeEEEEECCCCCEEE--EE------CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc--
Confidence 4688999999998776 43 234578889867766544311 13467899999999933334442
Q ss_pred CCCCCeEEEEeCCCeeEEEEEecc--CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEE----EEec
Q 000992 246 ENKCPSIVFYERNGLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI----RYLR 319 (1196)
Q Consensus 246 ~~~~~~V~~~e~nGl~~~~f~l~~--~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l----~~~~ 319 (1196)
..|..|+.++.....+.... .....|.++...++|.+.+... .+ +.+|+..+..+...... ....
T Consensus 427 ----~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G----l~~~~~~~~~~~~~~~~~~~~~~~~ 497 (795)
T 4a2l_A 427 ----GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA----LVRFNPEQRSFTTIEKEKDGTPVVS 497 (795)
T ss_dssp ----TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC----EEEEETTTTEEEECCBCTTCCBCCC
T ss_pred ----CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc----eeEEeCCCCeEEEccccccccccCC
Confidence 35888886543322222111 1135699999999998777654 55 88999877654211000 0001
Q ss_pred CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEE
Q 000992 320 RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAF 399 (1196)
Q Consensus 320 ~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vaf 399 (1196)
.....+..++++. |.+++.+| +..++ . ++..+.+.... ..+.+ ....|.++..
T Consensus 498 ~~i~~i~~d~~g~--lWigt~~G-l~~~~----~-----------~~~~~~~~~~~---~~~~l------~~~~i~~i~~ 550 (795)
T 4a2l_A 498 KQITTLFRDSHKR--LWIGGEEG-LSVFK----Q-----------EGLDIQKASIL---PVSNV------TKLFTNCIYE 550 (795)
T ss_dssp CCEEEEEECTTCC--EEEEESSC-EEEEE----E-----------ETTEEEECCCS---CSCGG------GGSCEEEEEE
T ss_pred ceEEEEEECCCCC--EEEEeCCc-eEEEe----C-----------CCCeEEEecCC---CCCCC------CCCeeEEEEE
Confidence 1225566666654 56666533 33222 1 11222111100 00111 2356899999
Q ss_pred ecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEE
Q 000992 400 YSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVS 465 (1196)
Q Consensus 400 spdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~ 465 (1196)
.++| + |-+++.+ -|..|+..+. .+...........+.+..+...++|.+.+..
T Consensus 551 d~~g--~-lWigT~~-Gl~~~d~~~~---------~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 551 ASNG--I-IWVGTRE-GFYCFNEKDK---------QIKRYNTTNGLPNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp CTTS--C-EEEEESS-CEEEEETTTT---------EEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred CCCC--C-EEEEeCC-CceeECCCCC---------cEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence 9988 4 5555555 6777886542 1111000001123468888888888876554
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.16 E-value=0.001 Score=72.76 Aligned_cols=219 Identities=11% Similarity=0.004 Sum_probs=130.9
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I 99 (1196)
.+.+++||++++.||++.. .+.|+.++. ..+... .+ ++.+ ...+.++++.|++..|.++ ..++.|
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~--~g~~~~-~~--~~~~--------~~~p~~ia~d~~~~~lyv~d~~~~~I 103 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASL--HGGEPT-TI--IRQD--------LGSPEGIALDHLGRTIFWTDSQLDRI 103 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEES--SSCCCE-EE--ECTT--------CCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEec--CCCCcE-EE--EECC--------CCCccEEEEEecCCeEEEEECCCCEE
Confidence 5678999999999999865 567999988 333221 11 1111 1478999999987666655 456789
Q ss_pred EEEECCCCeEEEeeeec-CcEEEEEECCCCCEEEEEeC---CceEEEEeccCceeeeeecccccCccccccCccccCCCC
Q 000992 100 LLHSVDGNATEVVGRVE-GGVRFISPSPDGDLLGVTTG---FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~~~-~~I~~~awSPDg~~LA~~s~---d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
..++.++.....+.... ..-..++++|++..|-.+.. .+.|..++.+....... .... -..
T Consensus 104 ~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~--~~~~-------------~~~ 168 (267)
T 1npe_A 104 EVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL--AQDN-------------LGL 168 (267)
T ss_dssp EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE--ECTT-------------CSC
T ss_pred EEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE--EECC-------------CCC
Confidence 99999875433222111 45789999998776655543 35676655443322111 0000 013
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE-EEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ-ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~-~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
-..++|+|||.+|- ++. ...+.|.+++. .|... ...... .....++ +++..|..+... ...|..
T Consensus 169 P~gia~d~~~~~ly-v~d-----~~~~~I~~~~~-~g~~~~~~~~~~-~~P~gi~--~d~~~lyva~~~-----~~~v~~ 233 (267)
T 1npe_A 169 PNGLTFDAFSSQLC-WVD-----AGTHRAECLNP-AQPGRRKVLEGL-QYPFAVT--SYGKNLYYTDWK-----TNSVIA 233 (267)
T ss_dssp EEEEEEETTTTEEE-EEE-----TTTTEEEEEET-TEEEEEEEEECC-CSEEEEE--EETTEEEEEETT-----TTEEEE
T ss_pred CcEEEEcCCCCEEE-EEE-----CCCCEEEEEec-CCCceEEEecCC-CCceEEE--EeCCEEEEEECC-----CCeEEE
Confidence 47899999987654 343 13578999999 55333 332322 2224555 456666655543 357888
Q ss_pred EeCC-CeeEEEEEeccCCCCcEEEEEEccCCC
Q 000992 255 YERN-GLERSSFDINEQIDSTVELLKWNCMSD 285 (1196)
Q Consensus 255 ~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~ 285 (1196)
++.+ |.....+ +.........|+++||+-
T Consensus 234 ~d~~~g~~~~~i--~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTF--HPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEE--CCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEE--ccccccccceeeecCccC
Confidence 8875 6554433 211112366788888874
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.15 E-value=0.00034 Score=82.28 Aligned_cols=211 Identities=17% Similarity=0.152 Sum_probs=129.2
Q ss_pred cCCCEEEE-EECCCcEEEEECCCC--eEEEeeeec----------CcEEEEEECCCCCEEEEEeCC------ceEEEEe-
Q 000992 85 MEKEALIV-GTSSGLLLLHSVDGN--ATEVVGRVE----------GGVRFISPSPDGDLLGVTTGF------GQILVMT- 144 (1196)
Q Consensus 85 pd~~~La~-as~dG~I~lw~~~~~--~~e~vg~~~----------~~I~~~awSPDg~~LA~~s~d------~tV~l~~- 144 (1196)
++.+.|.+ +..+++|.++|..+. +.+++..++ ..-..+..+||| +.+++.++ +.|.+++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 88888765 556788999998653 223222221 123456789999 77777666 6788887
Q ss_pred ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccc----------ccc---CCCCEEEEEECCC
Q 000992 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFC----------NSS---KLHKRLKVWERDS 211 (1196)
Q Consensus 145 ~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d----------~~~---~~d~~irVWd~~~ 211 (1196)
..++++......... ...-..+.|+||++.+. ++.+. ++. ....+|.+||..+
T Consensus 172 ~T~~v~~~~~~~~~~-------------~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 172 YSFEPLGKWEIDRGD-------------QYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp TTCCEEEECCSBCTT-------------CCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred CCCeEEEEEccCCCC-------------ccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 447776655433211 01124689999999888 45311 000 1257999999988
Q ss_pred CcEEEEeccC-CC-ceeEEEE--cCCCCeEEEEec-----CCCCCCCCeEEEEeCC-CeeEEE--EEeccC---C-----
Q 000992 212 GTLQASSELK-AF-MGAVLEW--MPSGANIAAVYD-----RKSENKCPSIVFYERN-GLERSS--FDINEQ---I----- 271 (1196)
Q Consensus 212 G~l~~~~e~~-~~-~v~slaw--sPdG~~IAs~s~-----d~~~~~~~~V~~~e~n-Gl~~~~--f~l~~~---~----- 271 (1196)
+++..+..-. .+ ....|.| +|+|++.-.+.. . ..+|..|..+ |....+ +.++.. .
T Consensus 238 ~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~L-----ss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 238 RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDL-----SSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTC-----CEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCC-----CceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence 8888776532 21 2244545 999998877765 4 2466665543 322111 112210 0
Q ss_pred -------CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC-CEEEEEEEEEE
Q 000992 272 -------DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN-NHWYLKYEIRY 317 (1196)
Q Consensus 272 -------~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n-~~wylkq~l~~ 317 (1196)
......|.+||||+.|-++.... +.|.++++.+ .+..+.+.+..
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~--d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGI--GEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEETTT--TEEEEEECSSTTSCEEEEEEEC
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeCCC--CEEEEEEecCCCCcEEEEEEEe
Confidence 13467899999999999987754 4899999853 23334444443
No 233
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.15 E-value=0.00034 Score=76.68 Aligned_cols=193 Identities=15% Similarity=0.077 Sum_probs=126.6
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCC--cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-CceEEEE
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSG--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVM 143 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~ 143 (1196)
+.++|..+......+.|+ ++....+.+.+| .|+.+|+.++++...-..+.........++|+.|-.++. ++.+.++
T Consensus 34 v~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 34 VHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp EEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 445556556678899999 777667777776 899999999876421123445555555667777777764 6677777
Q ss_pred e-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 144 T-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 144 ~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
+ .++..+.++...... +.++ +||+.|. ++. +..+|.++|+.+.+...+.+-..
T Consensus 113 D~~t~~~~~ti~~~~eG-----------------~glt--~dg~~L~-~Sd------Gs~~i~~iDp~T~~v~~~I~V~~ 166 (262)
T 3nol_A 113 NIRNLRQVRSFNYDGEG-----------------WGLT--HNDQYLI-MSD------GTPVLRFLDPESLTPVRTITVTA 166 (262)
T ss_dssp ETTTCCEEEEEECSSCC-----------------CCEE--ECSSCEE-ECC------SSSEEEEECTTTCSEEEEEECEE
T ss_pred ECccCcEEEEEECCCCc-----------------eEEe--cCCCEEE-EEC------CCCeEEEEcCCCCeEEEEEEecc
Confidence 6 456666666553321 3444 5777777 553 35789999998888887754211
Q ss_pred -----CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEecc---------CCCCcEEEEEEccCCCee
Q 000992 223 -----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINE---------QIDSTVELLKWNCMSDLL 287 (1196)
Q Consensus 223 -----~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~---------~~~~~V~~laWSpDg~~L 287 (1196)
...+.+.|. +|++.|..-. ...|...| .+|...+.+.+.. +.....+.|||+|+++.|
T Consensus 167 ~g~~~~~lNELe~~-~G~lyan~w~------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l 239 (262)
T 3nol_A 167 HGEELPELNELEWV-DGEIFANVWQ------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL 239 (262)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETT------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred CCccccccceeEEE-CCEEEEEEcc------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence 223457887 8876665533 24677777 4677666665531 112346889999999988
Q ss_pred EEEEcc
Q 000992 288 AAVVRF 293 (1196)
Q Consensus 288 As~~~d 293 (1196)
-+.+..
T Consensus 240 fVTGK~ 245 (262)
T 3nol_A 240 FVTGKL 245 (262)
T ss_dssp EEEETT
T ss_pred EEECCC
Confidence 887643
No 234
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.15 E-value=7.6e-05 Score=95.02 Aligned_cols=169 Identities=9% Similarity=0.049 Sum_probs=91.4
Q ss_pred cEEEEEEC-CCCCEEEEEeCC-c----eEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEe
Q 000992 118 GVRFISPS-PDGDLLGVTTGF-G----QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1196)
Q Consensus 118 ~I~~~awS-PDg~~LA~~s~d-~----tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv 191 (1196)
.+.+.+|| |||++||.+... | +|.+++.... . ..+. . .+ ......++|+|||+.|+ .
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g--~-~~l~-~----~~--------~~~~~~~~WspDg~~l~-y 237 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDP--S-QTIA-D----KV--------SGTNGEIVWGPDHTSLF-Y 237 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCT--T-CCCC-C----CE--------EEECSCCEECSSTTEEE-E
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCC--C-EeCC-c----cc--------cCceeeEEEecCCCEEE-E
Confidence 57889999 999999987532 2 4666653211 0 0000 0 00 01124689999999888 4
Q ss_pred eccccccCCCCEEEEEECCCCcE--EEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE---
Q 000992 192 SEFCNSSKLHKRLKVWERDSGTL--QASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF--- 265 (1196)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~G~l--~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f--- 265 (1196)
+..+.. .....|.+++..+++. ..+.+ +......+++|||||++|+..+.... ...|.+++.++.. +++
T Consensus 238 ~~~d~~-~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~l~~~d~~~~~-~~~~~~ 312 (751)
T 2xe4_A 238 VTKDET-LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPE---TAEVHLLDLRKGN-AHNTLE 312 (751)
T ss_dssp EEECTT-CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSS---CEEEEEEESSSCT-TCCCEE
T ss_pred EEECCC-CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCC---CceEEEEECCCCC-CCceeE
Confidence 443311 1113688888866541 12222 33345678899999999988775432 4567777765421 011
Q ss_pred EeccCCCCcEEEEEEccCCCeeEEEEccC--CcceEEEEEecC-CEE
Q 000992 266 DINEQIDSTVELLKWNCMSDLLAAVVRFE--EYDSVKICFFSN-NHW 309 (1196)
Q Consensus 266 ~l~~~~~~~V~~laWSpDg~~LAs~~~d~--~~~~V~lW~~~n-~~w 309 (1196)
.+........+++.|+. |+.|+..+... +...|..++..+ ..|
T Consensus 313 ~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~ 358 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDW 358 (751)
T ss_dssp ESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCC
T ss_pred EeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccc
Confidence 12211223345555543 66555555432 222455555554 344
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.10 E-value=0.00032 Score=85.17 Aligned_cols=233 Identities=11% Similarity=0.025 Sum_probs=131.9
Q ss_pred cCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEE-c-cCCCEEEEEE------------
Q 000992 30 IEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDY-L-MEKEALIVGT------------ 94 (1196)
Q Consensus 30 ~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~-s-pd~~~La~as------------ 94 (1196)
+|+..+|+... +..|-.+|+ .+.+.. +|.++|. +..+-.+++ + |+++++.+++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl--~t~~~~-~ii~ip~---------g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~ 166 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRC--DVMKCD-AILEIPN---------AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN 166 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEET--TTTEEE-EEEECSS---------CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred cCCCEEEEEcCCCCEEEEEEC--CCceEe-eEEeCCC---------CCCCcceeeeecCCCcEEEEecccccccCCCCcc
Confidence 58899999765 445888888 443331 2212332 346888888 5 9999998884
Q ss_pred ------CCCcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCc---------------eEEEEecc----
Q 000992 95 ------SSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFG---------------QILVMTHD---- 146 (1196)
Q Consensus 95 ------~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~---------------tV~l~~~~---- 146 (1196)
.++.|.++|.++.++. .+|. .-..++.||||+++.+++.+. .|.+.++-
T Consensus 167 l~~~~~~~~~vtvID~~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 167 MEDVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp TTCGGGEEEEEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred cccccccCceEEEEECCCCeEEEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 3457888999987653 2322 234567999999999998653 23333210
Q ss_pred ----Cce--eeeeecccccC--ccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc-----
Q 000992 147 ----WDL--LYENPLEELAE--GFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT----- 213 (1196)
Q Consensus 147 ----~d~--~~~~~l~~~~~--~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~----- 213 (1196)
++. +.++..-.... .+.+ +..-+-...-..+.++|||+|+. ++.. ...+|-|+|..+.+
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~~~~~~--~~~Ipvg~~PhGv~~sPDGk~v~-V~~~-----~s~~VsVid~~~~~~~~~~ 315 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKEASSLF--TRYIPIANNPHGCNMAPDKKHLC-VAGK-----LSPTVTVLDVTRFDAVFYE 315 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGGGCCSS--EEEEEEESSCCCEEECTTSSEEE-EECT-----TSSBEEEEEGGGHHHHHHS
T ss_pred eccCCCeeEECcEEEEeCcccCCcee--EEEEecCCCceEEEEcCCCCEEE-EeCC-----CCCeEEEEECccccccccc
Confidence 000 00000000000 0000 00001112235789999999998 6652 46799999995432
Q ss_pred -------EEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-------eeEEE--EEeccCCCCcEEE
Q 000992 214 -------LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-------LERSS--FDINEQIDSTVEL 277 (1196)
Q Consensus 214 -------l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-------l~~~~--f~l~~~~~~~V~~ 277 (1196)
.....+.-.+ -..++|+|+| .+-++..- ...|..|+.+. ....+ -++..+ ...-.
T Consensus 316 ~l~~~~~v~~~v~vG~g-P~h~aF~~dG-~aY~t~~l-----dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~--yqpGh 386 (595)
T 1fwx_A 316 NADPRSAVVAEPELGLG-PLHTAFDGRG-NAYTSLFL-----DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH--YQPGH 386 (595)
T ss_dssp CCCGGGGEEECCBCCSC-EEEEEECTTS-EEEEEETT-----TTEEEEEEHHHHHHHHHTCSCCCEEEEEECS--SCEEE
T ss_pred ccCcccceEEEcCCCCC-cceEEECCCC-eEEEEEec-----CCcEEEEEhhHhhhhhcccccceeEEEeecc--ccccc
Confidence 2333332233 4889999999 55555443 35788898532 11011 022211 12222
Q ss_pred E------EEccCCCeeEEEEccC
Q 000992 278 L------KWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 278 l------aWSpDg~~LAs~~~d~ 294 (1196)
. ..+|||++|.+...-.
T Consensus 387 ~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 387 LKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp EEETTTTSTTCCSSEEEEEESCC
T ss_pred ceeccceEeCCCCCEEEEcCCCC
Confidence 3 4479999999987543
No 236
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.05 E-value=0.0084 Score=76.48 Aligned_cols=244 Identities=9% Similarity=-0.002 Sum_probs=154.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++..|.++. |++++.+++|..++. ..+... .....+ ...-++...|.+|...++|. |-+|+.+|-|..
T Consensus 311 ~i~~i~~D~~g~-lWigt~~~Gl~~~~~--~~~~~~-~~~~~~----~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~ 381 (795)
T 4a2l_A 311 SVRSIFMDSQGG-MWLGTYFGGLNYYHP--IRNRFK-NIRNIP----YKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNL 381 (795)
T ss_dssp CEEEEEECTTSC-EEEEESSSCEEEECG--GGGSSE-EECCCT----TSSSCSCSSEEEEEECTTSC-EEEEESSSCEEE
T ss_pred cEEEEEEeCCcC-EEEEECCCCeEEeCC--Ccccce-EEcCCC----CCCCCCCCeeEEEEECCCCC-EEEEECCCCeEE
Confidence 678888898765 888998888999987 333321 111000 00122356799999888886 556888877999
Q ss_pred EECCCCeEEEee---------eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 102 HSVDGNATEVVG---------RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 102 w~~~~~~~e~vg---------~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
|+..++.+.... -....|.++...++|++|-+|+.++-|..++............ .. . ..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~-~~--------~--l~ 450 (795)
T 4a2l_A 382 YNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR-NS--------Q--LV 450 (795)
T ss_dssp ECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT-TS--------C--CS
T ss_pred EcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC-CC--------C--cC
Confidence 999887665332 1135699999999998666778766677766432222211110 00 0 11
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc------CCCceeEEEEcCCCCeEEEEecCCCC
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL------KAFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~------~~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
...|.++...++|.+.+ ++ . .-+.+||..+++....... ....+.++...++|++.+++. .
T Consensus 451 ~~~v~~i~~d~~g~lwi--gt------~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~--- 517 (795)
T 4a2l_A 451 NENVYAILPDGEGNLWL--GT------L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E--- 517 (795)
T ss_dssp CSCEEEEEECSSSCEEE--EE------S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S---
T ss_pred CCeeEEEEECCCCCEEE--Ee------c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C---
Confidence 34678999999999776 33 1 3477899877766543221 235678999999999877664 2
Q ss_pred CCCCeEEEEeCCCeeEEEEEe--c--cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 247 NKCPSIVFYERNGLERSSFDI--N--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l--~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.|..|+.++... .+.. . ......|.+|...++|.+.++.. .+ +..|+..+..
T Consensus 518 ----Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G----l~~~d~~~~~ 573 (795)
T 4a2l_A 518 ----GLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG----FYCFNEKDKQ 573 (795)
T ss_dssp ----CEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC----EEEEETTTTE
T ss_pred ----ceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC----ceeECCCCCc
Confidence 377777543322 2211 1 01134699999999999776654 36 8888877654
No 237
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.04 E-value=0.002 Score=72.18 Aligned_cols=234 Identities=11% Similarity=0.009 Sum_probs=133.0
Q ss_pred ceeEEeeecCCCEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC--c
Q 000992 22 ILQFSALDIEQNRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG--L 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG--~ 98 (1196)
...+++||+++. ||++. .++.|+.|+. ..+.. .+ .. . ...+.+|++.|+|+.+++....+ .
T Consensus 33 ~pegia~~~~g~-lyv~d~~~~~I~~~d~--~g~~~--~~-------~~--~--~~~p~gia~~~dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 33 FLENLASAPDGT-IFVTNHEVGEIVSITP--DGNQQ--IH-------AT--V--EGKVSGLAFTSNGDLVATGWNADSIP 96 (306)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECT--TCCEE--EE-------EE--C--SSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred CcceEEECCCCC-EEEEeCCCCeEEEECC--CCceE--EE-------Ee--C--CCCceeEEEcCCCcEEEEeccCCcce
Confidence 577889999876 77775 5778999988 33211 11 11 1 24689999999999655544332 4
Q ss_pred EEEEECCCCeEEEeeeec--CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee-cccc-cCccccccCccccCCC
Q 000992 99 LLLHSVDGNATEVVGRVE--GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP-LEEL-AEGFDVHEPELSSSFS 174 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg~~~--~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~-l~~~-~~~~~Vs~tqf~~~~~ 174 (1196)
|..++..+++++.+.... .....++..+++..+++-+.++.|...+...... ... .... ...... ..+ .
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~-~v~~~~~~~~~~~~~--~~~----~ 169 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG-SIWLEHPMLARSNSE--SVF----P 169 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE-EEEEECGGGSCSSTT--CCS----C
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE-eEEEECCcccccccc--CCC----C
Confidence 666787777765333221 1234455567766666555677776655321100 000 0000 000000 000 1
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-CcEE--EEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GTLQ--ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~l~--~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
.-..| +|||+++- ++. ...++|.+++.+. |++- ...... .....+++.|+|++.++... ...
T Consensus 170 ~pngi--s~dg~~ly-v~d-----~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~------~~~ 234 (306)
T 2p4o_A 170 AANGL--KRFGNFLY-VSN-----TEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHI------YNS 234 (306)
T ss_dssp SEEEE--EEETTEEE-EEE-----TTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBT------TCC
T ss_pred cCCCc--CcCCCEEE-EEe-----CCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCC------CCe
Confidence 22445 88998665 443 2457899999843 4321 111101 23467899999987666543 246
Q ss_pred EEEEeCCCeeEEEEEeccCCCCcEEEEEEc---cCCCeeEEEEccC
Q 000992 252 IVFYERNGLERSSFDINEQIDSTVELLKWN---CMSDLLAAVVRFE 294 (1196)
Q Consensus 252 V~~~e~nGl~~~~f~l~~~~~~~V~~laWS---pDg~~LAs~~~d~ 294 (1196)
|..|+.+|.......++.+ -....+++|. ||++.|.++...+
T Consensus 235 V~~~~~~G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 235 VVRIAPDRSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECTTCCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEEECCCCCEEEEeecccc-cCCceEEEEecccCCCCEEEEECCCC
Confidence 8899988854321122222 2458899999 8988888776643
No 238
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.03 E-value=0.00015 Score=84.16 Aligned_cols=97 Identities=4% Similarity=-0.228 Sum_probs=64.8
Q ss_pred CCCEEEEEeC-CC----cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE----------C
Q 000992 31 EQNRLFFASS-AN----NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT----------S 95 (1196)
Q Consensus 31 ~~~~l~~~s~-~~----~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as----------~ 95 (1196)
....+|+.+. ++ .+..+|. .+.+. +.+++.+ ... .+.++|||+.|.++. .
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~--~t~~v---~~~i~vG---------~~P-~i~~spDg~~lyVan~~~~r~~~G~~ 94 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCA--GCGVT---LGHSLGA---------FLS-LAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEET--TTTEE---EEEEEEC---------TTC-EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred CCCeEEEECCccCCccceEEEEEC--CCCeE---EEEEeCC---------CCC-ceEECCCCCEEEEEcccccccccCCC
Confidence 4467888765 33 5677887 55443 3333333 234 799999999999886 3
Q ss_pred CCcEEEEECCCCeEE-E--ee-ee----cCcEEEEEECCCCCEEEEEeC--CceEEE
Q 000992 96 SGLLLLHSVDGNATE-V--VG-RV----EGGVRFISPSPDGDLLGVTTG--FGQILV 142 (1196)
Q Consensus 96 dG~I~lw~~~~~~~e-~--vg-~~----~~~I~~~awSPDg~~LA~~s~--d~tV~l 142 (1196)
+++|.+||..+++.. . +| .- -..-..+++||||++|.++.. ++.|.+
T Consensus 95 ~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V 151 (368)
T 1mda_H 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL 151 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEE
Confidence 688999999987542 2 22 00 012457899999999999874 355665
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.99 E-value=0.005 Score=67.13 Aligned_cols=200 Identities=11% Similarity=-0.073 Sum_probs=120.1
Q ss_pred CCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeEEEeeee-cCcEEEEEECCCCCEEEEEe-CCceEEEEeccCceeee
Q 000992 76 DSITAFDYLMEKEALIVGT-SSGLLLLHSVDGNATEVVGRV-EGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as-~dG~I~lw~~~~~~~e~vg~~-~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~~~ 152 (1196)
..+.+++|.|+++.|..+. .++.|..++.+++....+... -.....++++|++..|..+. ..+.|.+++.+......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 3678999999877666554 567899999988654422211 14678999999876666554 56678776654322111
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCce-EEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEE
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEW 230 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~-lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slaw 230 (1196)
. .... -..-..+++.|++.+ ++ +... ...+.|.+++. +|....... ..-.....++|
T Consensus 116 ~-~~~~--------------~~~P~~i~vd~~~g~lyv-~~~~----~~~~~I~~~~~-dg~~~~~~~~~~~~~P~gia~ 174 (267)
T 1npe_A 116 L-FDTG--------------LVNPRGIVTDPVRGNLYW-TDWN----RDNPKIETSHM-DGTNRRILAQDNLGLPNGLTF 174 (267)
T ss_dssp E-ECSS--------------CSSEEEEEEETTTTEEEE-EECC----SSSCEEEEEET-TSCCCEEEECTTCSCEEEEEE
T ss_pred E-EECC--------------CCCccEEEEeeCCCEEEE-EECC----CCCcEEEEEec-CCCCcEEEEECCCCCCcEEEE
Confidence 1 1000 023478999996554 44 2321 01368888888 665444331 12234589999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+|+|+.|-.+... ...|..++.+|.....+ +.. ......|+. |+..|-++.... +.|..++..+.+
T Consensus 175 d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~-~~~--~~~P~gi~~--d~~~lyva~~~~--~~v~~~d~~~g~ 240 (267)
T 1npe_A 175 DAFSSQLCWVDAG-----THRAECLNPAQPGRRKV-LEG--LQYPFAVTS--YGKNLYYTDWKT--NSVIAMDLAISK 240 (267)
T ss_dssp ETTTTEEEEEETT-----TTEEEEEETTEEEEEEE-EEC--CCSEEEEEE--ETTEEEEEETTT--TEEEEEETTTTE
T ss_pred cCCCCEEEEEECC-----CCEEEEEecCCCceEEE-ecC--CCCceEEEE--eCCEEEEEECCC--CeEEEEeCCCCC
Confidence 9998877666553 35899999887543332 221 123456654 455555554432 268888876654
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.99 E-value=0.0009 Score=73.90 Aligned_cols=191 Identities=10% Similarity=0.036 Sum_probs=118.7
Q ss_pred ccccCCCCCCEEEEEEccCCCEEEEEEC---CCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEe-CCceEEE
Q 000992 68 EHIDLEPGDSITAFDYLMEKEALIVGTS---SGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILV 142 (1196)
Q Consensus 68 ~~~~~~~~~~v~~v~~spd~~~La~as~---dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l 142 (1196)
.++|.-+......++|+||+ .|.+++. ++.|..+|..++++. .+. .........+.++|+.|..++ .+++|.+
T Consensus 13 ~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~~fgeGi~~~g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 13 NEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHK-MDDSYFGEGLTLLNEKLYQVVWLKNIGFI 90 (266)
T ss_dssp EEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTTCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred EEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCCcceEEEEEeCCEEEEEEecCCEEEE
Confidence 33444333467899999997 4555442 578999999998764 221 122222233444566666665 4677877
Q ss_pred Ee-ccCceeeeeecc-cccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc
Q 000992 143 MT-HDWDLLYENPLE-ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL 220 (1196)
Q Consensus 143 ~~-~~~d~~~~~~l~-~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~ 220 (1196)
.+ ..+..+.+++.. +.. +.++ +||+.+. ++. +.++|.++|..+.+...+..-
T Consensus 91 iD~~t~~v~~~i~~g~~~g-----------------~glt--~Dg~~l~-vs~------gs~~l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQMKDG-----------------WGLA--TDGKILY-GSD------GTSILYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp EETTTTEEEEEEECCSSSC-----------------CEEE--ECSSSEE-EEC------SSSEEEEECTTTCCEEEEEEC
T ss_pred EECCCCcEEEEEECCCCCe-----------------EEEE--ECCCEEE-EEC------CCCeEEEEECCCCcEEEEEEE
Confidence 76 446666655543 111 3344 5888776 553 357999999988887776542
Q ss_pred CC-----CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEecc----------CCCCcEEEEEEccCC
Q 000992 221 KA-----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINE----------QIDSTVELLKWNCMS 284 (1196)
Q Consensus 221 ~~-----~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~----------~~~~~V~~laWSpDg 284 (1196)
.. ...+.+.|. +|.+.|.... ...|...+. +|...+.+.+.. +.....+.|+|+||+
T Consensus 145 g~~~~p~~~~nele~~-dg~lyvn~~~------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~ 217 (266)
T 2iwa_A 145 KYNGHRVIRLNELEYI-NGEVWANIWQ------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN 217 (266)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETT------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred CCCCcccccceeEEEE-CCEEEEecCC------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence 11 124678888 8866655433 357888885 666666665531 111356899999999
Q ss_pred CeeEEEEcc
Q 000992 285 DLLAAVVRF 293 (1196)
Q Consensus 285 ~~LAs~~~d 293 (1196)
+.|-+++..
T Consensus 218 ~~lfVTgk~ 226 (266)
T 2iwa_A 218 KRIFVTGKL 226 (266)
T ss_dssp TEEEEEETT
T ss_pred CEEEEECCC
Confidence 988887654
No 241
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.96 E-value=0.0013 Score=71.55 Aligned_cols=192 Identities=13% Similarity=0.040 Sum_probs=124.2
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCC--cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCceEEEE
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSG--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVM 143 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~ 143 (1196)
+.++|+.+....-.+.|++ +....+.+..| .|+.+|+.++++...-............++|+.|-.++ .++.+.++
T Consensus 12 ~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp EEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 5667777778899999987 55555555554 89999999987652212234444444455566666665 46677777
Q ss_pred e-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 144 T-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 144 ~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
+ .++..+.+++..... +.++ +||+.|. +|. +.++|.++|+.+.+...+.+-..
T Consensus 91 D~~tl~~~~ti~~~~~G-----------------wglt--~dg~~L~-vSd------gs~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 91 DLATLTPRARFRYPGEG-----------------WALT--SDDSHLY-MSD------GTAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp ETTTTEEEEEEECSSCC-----------------CEEE--ECSSCEE-EEC------SSSEEEEECTTTCCEEEEEECEE
T ss_pred ECCcCcEEEEEeCCCCc-----------------eEEe--eCCCEEE-EEC------CCCeEEEEeCCCCeEEEEEEEcc
Confidence 6 456666666543221 4555 4677666 453 35789999998888877654221
Q ss_pred -----CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEecc----------CCCCcEEEEEEccCCCe
Q 000992 223 -----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINE----------QIDSTVELLKWNCMSDL 286 (1196)
Q Consensus 223 -----~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~----------~~~~~V~~laWSpDg~~ 286 (1196)
...+.+.|. +|++.|..-. ...|...| ++|...+.+.+.. +.....+.|||+|+++.
T Consensus 145 ~g~~~~~lNeLe~~-~G~lyanvw~------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 217 (243)
T 3mbr_X 145 GGRPLDNLNELEWV-NGELLANVWL------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR 217 (243)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETT------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred CCcccccceeeEEe-CCEEEEEECC------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence 233567776 7876665532 24677777 4677777666541 11235688999999988
Q ss_pred eEEEEc
Q 000992 287 LAAVVR 292 (1196)
Q Consensus 287 LAs~~~ 292 (1196)
|-+.+.
T Consensus 218 lfVTGK 223 (243)
T 3mbr_X 218 LFVTGK 223 (243)
T ss_dssp EEEEET
T ss_pred EEEECC
Confidence 877654
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.92 E-value=0.001 Score=73.37 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=117.9
Q ss_pred ceeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE-EEEECCC
Q 000992 22 ILQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL-IVGTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~L-a~as~dG 97 (1196)
...+++|+++ +.||.++. ++.|..+|+ .+++....+ + +.. ......+++. ++.| ++...++
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~--~tg~v~~~i---~--l~~-----~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVAL--QTGKVENIH---K--MDD-----SYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp CEEEEEECST-TEEEEEECSTTTCEEEEEET--TTCCEEEEE---E--CCT-----TCCEEEEEEE--TTEEEEEETTCS
T ss_pred CcccEEEeCC-CeEEEECCCCCCCEEEEEEC--CCCCEEEEE---e--cCC-----CcceEEEEEe--CCEEEEEEecCC
Confidence 3588999988 58999875 467999999 666652222 1 111 1233455554 4455 4555688
Q ss_pred cEEEEECCCCeE-EEe--eeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCC
Q 000992 98 LLLLHSVDGNAT-EVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 98 ~I~lw~~~~~~~-e~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
.|.++|..+.++ ..+ | ...+ ...+|||+.|.++.++++|.+++ ..+..+..+..... ..++
T Consensus 87 ~v~viD~~t~~v~~~i~~g-~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~--~~p~--------- 151 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQ-MKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN--GHRV--------- 151 (266)
T ss_dssp EEEEEETTTTEEEEEEECC-SSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET--TEEC---------
T ss_pred EEEEEECCCCcEEEEEECC-CCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC--Cccc---------
Confidence 999999998654 222 3 1122 34678999988888888888775 34454544443321 1121
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-------------CCceeEEEEcCCCCeEEEE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-------------AFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-------------~~~v~slawsPdG~~IAs~ 240 (1196)
.....+.|. ||+.+| ... ....|.+-|..+|+...+..-. ......|+|+|+|+.+-.+
T Consensus 152 ~~~nele~~-dg~lyv-n~~------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT 223 (266)
T 2iwa_A 152 IRLNELEYI-NGEVWA-NIW------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT 223 (266)
T ss_dssp CCEEEEEEE-TTEEEE-EET------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred ccceeEEEE-CCEEEE-ecC------CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence 134678888 898777 333 2468999999999988876421 0133799999999877776
Q ss_pred ecC
Q 000992 241 YDR 243 (1196)
Q Consensus 241 s~d 243 (1196)
+..
T Consensus 224 gk~ 226 (266)
T 2iwa_A 224 GKL 226 (266)
T ss_dssp ETT
T ss_pred CCC
Confidence 653
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.89 E-value=0.00063 Score=76.74 Aligned_cols=193 Identities=10% Similarity=0.042 Sum_probs=113.4
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee--------------------ecCcEEEEEECC-CCCEEEEEe
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR--------------------VEGGVRFISPSP-DGDLLGVTT 135 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~--------------------~~~~I~~~awSP-Dg~~LA~~s 135 (1196)
.+.+++|.++|+.+.++..+|.|..|+..++.+..... ..+....++++| +|+++ ++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EEE
Confidence 46778899999988889999999999998876653321 113578999998 66544 454
Q ss_pred CCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeecccc-----------ccCCCCE
Q 000992 136 GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCN-----------SSKLHKR 203 (1196)
Q Consensus 136 ~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~-----------~~~~d~~ 203 (1196)
..+.|..++.....+.... ....... ......+++.| ||.+++ ...... +....+.
T Consensus 99 ~~~~i~~~d~~~g~~~~~~--~~~~~~~---------~~~p~~i~~d~~~G~l~v-~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLA--TSVDGVP---------FKWLYAVTVDQRTGIVYF-TDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp TTTEEEEECTTCEECEEEE--SEETTEE---------CSCEEEEEECTTTCCEEE-EESCSSCCTTCHHHHHHHTCCCEE
T ss_pred CCCCEEEEeCCCCEEEEec--ccCCCCc---------ccccceEEEecCCCEEEE-ECCcccccccccceehcccCCCce
Confidence 4444665543321111110 0000000 02346799999 998777 332100 0012367
Q ss_pred EEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee---EEEEEeccCCCCcEEEEEE
Q 000992 204 LKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE---RSSFDINEQIDSTVELLKW 280 (1196)
Q Consensus 204 irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~---~~~f~l~~~~~~~V~~laW 280 (1196)
|..||..+|+......... ....|+|+|+|+.|..+... ...|..|+.+|.. ...|. .. .+ ...|++
T Consensus 167 v~~~d~~~~~~~~~~~~~~-~p~gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~~-~~--~g-P~gi~~ 236 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKELH-VPGGAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVLV-KI--PN-PGNIKR 236 (322)
T ss_dssp EEEEETTTTEEEEEEEEES-CCCEEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEEE-EC--SS-EEEEEE
T ss_pred EEEEeCCCCEEEEeccCCc-cCcceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceEE-eC--CC-CCCeEE
Confidence 8889986676544332222 23679999999976655432 2578888876521 11121 11 12 667888
Q ss_pred ccCCCeeEEEEc
Q 000992 281 NCMSDLLAAVVR 292 (1196)
Q Consensus 281 SpDg~~LAs~~~ 292 (1196)
.++|.+.++...
T Consensus 237 d~~G~l~va~~~ 248 (322)
T 2fp8_A 237 NADGHFWVSSSE 248 (322)
T ss_dssp CTTSCEEEEEEE
T ss_pred CCCCCEEEEecC
Confidence 898886655443
No 244
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.84 E-value=0.0011 Score=72.78 Aligned_cols=190 Identities=12% Similarity=0.028 Sum_probs=124.7
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEe
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMT 144 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~ 144 (1196)
+.++|..+......+.|+ ++....+.+.+|.|+.+|+.++++. .+ .+.........++|+.|-.++ .++.+.+++
T Consensus 46 v~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 46 IREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred EEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 344556556678899987 4666677788899999999998653 33 344554444455666666665 466777776
Q ss_pred -ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC-
Q 000992 145 -HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA- 222 (1196)
Q Consensus 145 -~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~- 222 (1196)
.++..+.++...... +.++ +||+.|. ++. +..+|.++|..+++...+.+-..
T Consensus 123 ~~Tl~~~~ti~~~~eG-----------------wGLt--~Dg~~L~-vSd------Gs~~l~~iDp~T~~v~~~I~V~~~ 176 (268)
T 3nok_A 123 GMPPQRERTTRYSGEG-----------------WGLC--YWNGKLV-RSD------GGTMLTFHEPDGFALVGAVQVKLR 176 (268)
T ss_dssp TTTTEEEEEEECSSCC-----------------CCEE--EETTEEE-EEC------SSSEEEEECTTTCCEEEEEECEET
T ss_pred CCcCcEEEEEeCCCce-----------------eEEe--cCCCEEE-EEC------CCCEEEEEcCCCCeEEEEEEeCCC
Confidence 456666666543221 4455 5777777 553 35799999998988887754211
Q ss_pred ----CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEecc---------C-CCCcEEEEEEccCCCee
Q 000992 223 ----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINE---------Q-IDSTVELLKWNCMSDLL 287 (1196)
Q Consensus 223 ----~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~---------~-~~~~V~~laWSpDg~~L 287 (1196)
...+.+.|. +|++.|..-. ...|...|. +|...+.+.+.. . .....+.|||+|+++.|
T Consensus 177 g~~v~~lNeLe~~-dG~lyanvw~------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl 249 (268)
T 3nok_A 177 GQPVELINELECA-NGVIYANIWH------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI 249 (268)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETT------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred CcccccccccEEe-CCEEEEEECC------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence 133667887 8876665533 246877874 677777665541 1 12356889999999888
Q ss_pred EEEEc
Q 000992 288 AAVVR 292 (1196)
Q Consensus 288 As~~~ 292 (1196)
-+.+.
T Consensus 250 fVTGK 254 (268)
T 3nok_A 250 FMTGK 254 (268)
T ss_dssp EEEET
T ss_pred EEeCC
Confidence 77654
No 245
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.81 E-value=0.00012 Score=85.12 Aligned_cols=101 Identities=11% Similarity=-0.031 Sum_probs=68.0
Q ss_pred EEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCC----CCCCCCeEEEEeC-CCeeEEEEEeccCC----CC
Q 000992 203 RLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK----SENKCPSIVFYER-NGLERSSFDINEQI----DS 273 (1196)
Q Consensus 203 ~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~----~~~~~~~V~~~e~-nGl~~~~f~l~~~~----~~ 273 (1196)
+|-|.|..+++.+.+....... .+++||||+.+..+.... .+.....|.+||. ++...+++.++... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999887643333 799999999988875210 0011357999995 45555555443110 01
Q ss_pred cEEEEEEccCCCeeEEEEccCCcceEEE--EEecC
Q 000992 274 TVELLKWNCMSDLLAAVVRFEEYDSVKI--CFFSN 306 (1196)
Q Consensus 274 ~V~~laWSpDg~~LAs~~~d~~~~~V~l--W~~~n 306 (1196)
....+++||||+.|.++.... .+.|.+ ||..+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~-~~~v~V~~iD~~t 158 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGS-SAAAGLSVPGASD 158 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSS-SCEEEEEETTTEE
T ss_pred CcceEEEcCCCCEEEEEccCC-CCeEEEEEEchhh
Confidence 245799999999999987531 126888 88765
No 246
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.79 E-value=0.001 Score=74.20 Aligned_cols=216 Identities=11% Similarity=0.033 Sum_probs=134.6
Q ss_pred CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEE
Q 000992 32 QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEV 111 (1196)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~ 111 (1196)
++.||+++.++.++.++. . ++..+... . +...+.++...+++. |.+++.+|.|..+|..+.....
T Consensus 107 ~~~l~v~t~~~~l~~~d~--~-g~~~~~~~-----~------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~~~~~ 171 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINT--D-GTEKWRFK-----T------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPDGTEKWR 171 (330)
T ss_dssp TTEEEEECTTSEEEEECT--T-SCEEEEEE-----C------SSCCCSCCEECTTSC-EEEECTTSEEEEECTTSCEEEE
T ss_pred CCEEEEEecCCEEEEEcC--C-CCEEEEEc-----C------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCCCCEeEE
Confidence 788999998888999998 4 43333322 0 112344455666776 6668888999999998433323
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEe
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv 191 (1196)
.......+.++...++|.+.+ ++ +.|..++.+......... ....+.++...+||...+
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d~~g~~~~~~~~----------------~~~~~~~~~~~~~g~l~v-- 230 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYF-GS--DKVYAINPDGTEKWNFYA----------------GYWTVTRPAISEDGTIYV-- 230 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEE-ES--SSEEEECTTSCEEEEECC----------------SSCCCSCCEECTTSCEEE--
T ss_pred EecCCCceeeeEEcCCCEEEE-Ee--CEEEEECCCCcEEEEEcc----------------CCcceeceEECCCCeEEE--
Confidence 332234577788888988654 34 667776644333222211 113456788899998776
Q ss_pred eccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC
Q 000992 192 SEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI 271 (1196)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~ 271 (1196)
++ .++.+..+|. +|+.............++...++|++.+++ .+ ..|..++.+|.....+.++
T Consensus 231 ~t------~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t-~~------ggl~~~d~~g~~~~~~~~~--- 293 (330)
T 3hxj_A 231 TS------LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGS-YD------GHLYAINPDGTEKWNFETG--- 293 (330)
T ss_dssp EE------TTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEEC-TT------CEEEEECTTSCEEEEEECS---
T ss_pred Ec------CCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEec-CC------CCEEEECCCCcEEEEEEcC---
Confidence 33 2356777787 887776665444555667777888766544 32 3588889888765554433
Q ss_pred CCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 272 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 272 ~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
...+.++...++|++.+ ++.++ .+.+...
T Consensus 294 ~~~~~~~~~d~~g~l~~-gt~~G---~~~~~~~ 322 (330)
T 3hxj_A 294 SWIIATPVIDENGTIYF-GTRNG---KFYALFN 322 (330)
T ss_dssp SCCCSCCEECTTCCEEE-ECTTS---CEEEEEC
T ss_pred CccccceEEcCCCEEEE-EcCCC---eEEEEec
Confidence 23466777888887554 55666 4655443
No 247
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.75 E-value=0.0079 Score=67.26 Aligned_cols=194 Identities=12% Similarity=0.102 Sum_probs=109.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCce--EEEEe-ccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ--ILVMT-HDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~t--V~l~~-~~~d~~~ 151 (1196)
+..+.+++|.|+|+.+++-..+|.|..|+.+++...... ..+....++++|||+++++....+. |..++ .+.....
T Consensus 31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 356889999999997777668899999999886544433 2456889999999997665544323 44332 2222211
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc--EEEEe------ccCCC
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT--LQASS------ELKAF 223 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~--l~~~~------e~~~~ 223 (1196)
-.... . . ..-..++..+++..++ +.+ ..+.|.++|..+|+ ..... .....
T Consensus 110 ~~~~~-~--------~------~~~~g~~~~~~~~~~v-~d~------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~ 167 (306)
T 2p4o_A 110 LLTLP-D--------A------IFLNGITPLSDTQYLT-ADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESV 167 (306)
T ss_dssp EEECT-T--------C------SCEEEEEESSSSEEEE-EET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred EEeCC-C--------c------cccCcccccCCCcEEE-EEC------CCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence 00100 0 0 0112344445666555 232 24678888885442 21111 11111
Q ss_pred --ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC--ee--EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcc
Q 000992 224 --MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG--LE--RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297 (1196)
Q Consensus 224 --~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG--l~--~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~ 297 (1196)
....| +|||+.|-.+... ...|..|+.++ .. ...|. .. .....|++++||.+.++....+
T Consensus 168 ~~~pngi--s~dg~~lyv~d~~-----~~~I~~~~~~~~g~~~~~~~~~-~~---~~P~gi~vd~dG~l~va~~~~~--- 233 (306)
T 2p4o_A 168 FPAANGL--KRFGNFLYVSNTE-----KMLLLRIPVDSTDKPGEPEIFV-EQ---TNIDDFAFDVEGNLYGATHIYN--- 233 (306)
T ss_dssp SCSEEEE--EEETTEEEEEETT-----TTEEEEEEBCTTSCBCCCEEEE-ES---CCCSSEEEBTTCCEEEECBTTC---
T ss_pred CCcCCCc--CcCCCEEEEEeCC-----CCEEEEEEeCCCCCCCccEEEe-cc---CCCCCeEECCCCCEEEEeCCCC---
Confidence 22445 8999877666543 35788888653 21 11111 11 1234689999998655544333
Q ss_pred eEEEEEec
Q 000992 298 SVKICFFS 305 (1196)
Q Consensus 298 ~V~lW~~~ 305 (1196)
.|..++..
T Consensus 234 ~V~~~~~~ 241 (306)
T 2p4o_A 234 SVVRIAPD 241 (306)
T ss_dssp CEEEECTT
T ss_pred eEEEECCC
Confidence 68877764
No 248
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.72 E-value=0.0033 Score=68.92 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=115.6
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.+++||+++++||++++ ++.|+..|. . ++.... ++ +.+ ....-+|++.+++.++++.-.++.+.
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~--~-g~v~~~---i~--l~g-----~~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTT--N-GDLIRT---IP--LDF-----VKDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEET--T-CCEEEE---EE--CSS-----CSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeC--C-CCEEEE---Ee--cCC-----CCChHHeEEeCCCEEEEEECCCCcEE
Confidence 6899999999999999866 667999998 4 443211 11 111 14577899999987544433566788
Q ss_pred EEECCC-CeE---EEee------eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccc
Q 000992 101 LHSVDG-NAT---EVVG------RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELS 170 (1196)
Q Consensus 101 lw~~~~-~~~---e~vg------~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~ 170 (1196)
+++... +.+ ...+ ....+...++|+|+++.|-++.+.....++..+. ......++...+ ..+...
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~~~~l~i~~~-~~~~~~--- 169 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLSSNELHISKD-KALQRQ--- 169 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTCSSCCEEEEC-HHHHHT---
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-cccCCceeeecc-hhhccc---
Confidence 877654 222 2111 1234678999999999888887765555543221 001000100000 000000
Q ss_pred cCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC---------ceeEEEEcCCCCeEEEE
Q 000992 171 SSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF---------MGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 171 ~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~---------~v~slawsPdG~~IAs~ 240 (1196)
.+-.....+++.|... +++ +|. ..+.+-++|. +|+..+...-..+ .-..|+|.|+|++..++
T Consensus 170 ~~~~d~S~l~~dp~tg~lli-LS~------~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 170 FTLDDVSGAEFNQQKNTLLV-LSH------ESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp CCSSCCCEEEEETTTTEEEE-EET------TTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred cccCCceeEEEcCCCCeEEE-EEC------CCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 0012346888888655 444 553 4588999999 8987776532211 23799999999966653
No 249
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=0.0076 Score=71.29 Aligned_cols=240 Identities=8% Similarity=-0.019 Sum_probs=133.4
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC-C--
Q 000992 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS-G-- 97 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d-G-- 97 (1196)
.+.++++|+ +.+.||++...+.|..+++ ..+.. .+ +.. ....+..|+|+++|+.|.++... |
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~--~~~~v----~~----~~~----~~~~P~~ia~d~~G~~lyvad~~~~~~ 203 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDF--EKEYV----ST----VYS----GLSKVRTICWTHEADSMIITNDQNNND 203 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEET--TTTEE----EE----EEC----CCSCEEEEEECTTSSEEEEEECCSCTT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEEC--CCCEE----EE----Eec----CCCCcceEEEeCCCCEEEEEeCCCCcc
Confidence 567899998 5888999977677889988 33332 11 111 23579999999999966666542 2
Q ss_pred --cEEEEECCCCeE--EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 98 --LLLLHSVDGNAT--EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 98 --~I~lw~~~~~~~--e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
.+...+.++... ..+.. -.....++++| +|.+.++-..++.|..++.+........ ... .
T Consensus 204 ~~~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~--~~~------------~ 268 (430)
T 3tc9_A 204 RPNNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF--TIQ------------D 268 (430)
T ss_dssp SEEEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE--ECS------------S
T ss_pred cceEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE--EcC------------C
Confidence 344455554322 22222 23457788999 7777766667788877765432221111 000 0
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CCcE--EEEecc---CCCc------------ee-EEEEc-
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTL--QASSEL---KAFM------------GA-VLEWM- 231 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G~l--~~~~e~---~~~~------------v~-slaws- 231 (1196)
...-..|+|+|||++|- ++. ...+.|.+++.+ +|.+ ..+..+ ..+. -. .++..
T Consensus 269 ~~~P~gia~~pdG~~ly-v~d-----~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~ 342 (430)
T 3tc9_A 269 SGWEFHIQFHPSGNYAY-IVV-----VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKN 342 (430)
T ss_dssp SSCCEEEEECTTSSEEE-EEE-----TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEEC
T ss_pred CCcceeEEEcCCCCEEE-EEE-----CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcc
Confidence 01236899999999554 333 135788887762 2332 111111 1110 12 45553
Q ss_pred -------CCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEe-----cc--CC-------CCcEEEEEEccCCCeeEEE
Q 000992 232 -------PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI-----NE--QI-------DSTVELLKWNCMSDLLAAV 290 (1196)
Q Consensus 232 -------PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l-----~~--~~-------~~~V~~laWSpDg~~LAs~ 290 (1196)
++|++.++=.. .+.|+.++.+|.....+-. .+ .+ -.....|+++|++..|.++
T Consensus 343 ~~y~~~D~~g~lyvaD~~------n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 416 (430)
T 3tc9_A 343 PAYKGSSDEYDFYFCDRE------NHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG 416 (430)
T ss_dssp GGGTTSSCCEEEEEEEGG------GTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred ccccccCCCCeEEEEECC------CcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE
Confidence 44666555333 3578888888854332211 00 00 0247889999954444444
Q ss_pred EccCCcceEEEEEe
Q 000992 291 VRFEEYDSVKICFF 304 (1196)
Q Consensus 291 ~~d~~~~~V~lW~~ 304 (1196)
.... +.|+..+.
T Consensus 417 D~~n--~rIr~i~~ 428 (430)
T 3tc9_A 417 DREN--RRIRKIGY 428 (430)
T ss_dssp EGGG--TEEEEEEE
T ss_pred ECCC--CeEEEEcc
Confidence 3322 25666553
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.68 E-value=0.0017 Score=71.13 Aligned_cols=184 Identities=9% Similarity=0.083 Sum_probs=114.5
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE-EECCC
Q 000992 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~-as~dG 97 (1196)
-.+++.|+ + +.||.++.. +.|..+|+ .+++...++ ++.+...--+++. +++.|.. ...++
T Consensus 44 ftqGL~~~-~-~~LyestG~~g~S~v~~vD~--~Tgkv~~~~----------~l~~~~FgeGit~--~g~~ly~ltw~~~ 107 (262)
T 3nol_A 44 FTEGFFYR-N-GYFYESTGLNGRSSIRKVDI--ESGKTLQQI----------ELGKRYFGEGISD--WKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEEE-T-TEEEEEEEETTEEEEEEECT--TTCCEEEEE----------ECCTTCCEEEEEE--ETTEEEEEESSSS
T ss_pred ccceEEEE-C-CEEEEECCCCCCceEEEEEC--CCCcEEEEE----------ecCCccceeEEEE--eCCEEEEEEeeCC
Confidence 35788888 4 588888653 47999999 666653222 1111111233433 4555554 45688
Q ss_pred cEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCC
Q 000992 98 LLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 98 ~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
.+.+||..+.+.. .+.. .+ .....++||+.|....++++|.+++ ..+..+..+..... +.++ ..
T Consensus 108 ~v~v~D~~t~~~~~ti~~-~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~--g~~~---------~~ 173 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNY-DG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH--GEEL---------PE 173 (262)
T ss_dssp EEEEEETTTCCEEEEEEC-SS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET--TEEC---------CC
T ss_pred EEEEEECccCcEEEEEEC-CC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC--Cccc---------cc
Confidence 9999999986542 2221 11 2234557899888888788887775 34565555554321 1222 23
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC------------CCceeEEEEcCCCCeEEEEecC
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK------------AFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~------------~~~v~slawsPdG~~IAs~s~d 243 (1196)
...+.|. ||+.+| ... ....|.+.|..+|+...+..-. ...-+.|||+|+++.|-.++..
T Consensus 174 lNELe~~-~G~lya-n~w------~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 174 LNELEWV-DGEIFA-NVW------QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEEEE-TTEEEE-EET------TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cceeEEE-CCEEEE-EEc------cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 3567887 898887 333 2468889999999988765421 1123889999999988777653
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.67 E-value=0.0052 Score=66.69 Aligned_cols=184 Identities=9% Similarity=0.015 Sum_probs=115.3
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc
Q 000992 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~ 98 (1196)
-.+++.||. +.||..+.. +.|..+|+ .+++....+. ++.. ..--+++.. .++..++...++.
T Consensus 22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~--~tgkv~~~~~-l~~~---------~fgeGi~~~-~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 22 FTEGLFYLR--GHLYESTGETGRSSVRKVDL--ETGRILQRAE-VPPP---------YFGAGIVAW-RDRLIQLTWRNHE 86 (243)
T ss_dssp CEEEEEEET--TEEEEEECCTTSCEEEEEET--TTCCEEEEEE-CCTT---------CCEEEEEEE-TTEEEEEESSSSE
T ss_pred ccccEEEEC--CEEEEECCCCCCceEEEEEC--CCCCEEEEEe-CCCC---------cceeEEEEe-CCEEEEEEeeCCE
Confidence 577899986 789998664 47999999 6666532221 2211 112333333 2344455667899
Q ss_pred EEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCe
Q 000992 99 LLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 99 I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
+.+||.++.+.. .+..-..| ...++||+.|..+.++++|.+++ ..+..+..+..... +.++ ..+
T Consensus 87 v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~--g~~~---------~~l 152 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG--GRPL---------DNL 152 (243)
T ss_dssp EEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEET--TEEC---------CCE
T ss_pred EEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC--Cccc---------ccc
Confidence 999999986542 22211122 23347888888888888998876 44555555554332 2222 234
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-------------CCCceeEEEEcCCCCeEEEEec
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-------------KAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-------------~~~~v~slawsPdG~~IAs~s~ 242 (1196)
..+.|. ||+.+| -.. ....|.+-|..+|+......- ....-+.|||.|+++.|-.++.
T Consensus 153 NeLe~~-~G~lya-nvw------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 153 NELEWV-NGELLA-NVW------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEE-TTEEEE-EET------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eeeEEe-CCEEEE-EEC------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 567777 888887 333 235788889999998876531 1123488999999888777765
No 252
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.64 E-value=0.0032 Score=79.04 Aligned_cols=248 Identities=8% Similarity=0.014 Sum_probs=138.2
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC------CCcEEEEEC
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS------SGLLLLHSV 104 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~------dG~I~lw~~ 104 (1196)
+++.||+++.++.++.+|. .+++..|+...-...-....+. ...+. .+..+.+++. +|.|..+|.
T Consensus 127 ~~~~v~v~~~dg~l~alD~--~tG~~~W~~~~~~~~~~~~~~~-~~p~v------~~~~v~v~~~~~~~~~~g~v~a~D~ 197 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDA--ATGKEVWHQNTFEGQKGSLTIT-GAPRV------FKGKVIIGNGGAEYGVRGYITAYDA 197 (677)
T ss_dssp ETTEEEEECTTSEEEEEET--TTCCEEEEEETTTTCCSSCBCC-SCCEE------ETTEEEECCBCTTTCCBCEEEEEET
T ss_pred ECCEEEEEcCCCEEEEEEC--CCCCEEeeecCCcCcCcCcccc-cCcEE------ECCEEEEEecccccCCCCEEEEEEC
Confidence 4789999999999999999 7777767754210000000010 11111 1345555543 688999999
Q ss_pred CCCeEE--E-e-eee-----------------------------cCcEEEEEECCCCCEEEEEeCCce------------
Q 000992 105 DGNATE--V-V-GRV-----------------------------EGGVRFISPSPDGDLLGVTTGFGQ------------ 139 (1196)
Q Consensus 105 ~~~~~e--~-v-g~~-----------------------------~~~I~~~awSPDg~~LA~~s~d~t------------ 139 (1196)
.+++.. . . +.. ......++++|++.+|.++++++.
T Consensus 198 ~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~g 277 (677)
T 1kb0_A 198 ETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGG 277 (677)
T ss_dssp TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCC
T ss_pred CCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCC
Confidence 887653 1 1 110 001135789999999999988763
Q ss_pred -------EEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCC---ceEEEeeccccccCCCCEEEEEE
Q 000992 140 -------ILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG---KYFATLSEFCNSSKLHKRLKVWE 208 (1196)
Q Consensus 140 -------V~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG---~~lAsvss~d~~~~~d~~irVWd 208 (1196)
|.-++. +++.+-.......+ .+ .+.. .....-+....|| ..++ +++ .++.|.++|
T Consensus 278 d~~~~~sv~AlD~~TG~~~W~~~~~~~d--~w----d~~~-~~~p~l~~~~~dG~~~~~l~-~~~------~~G~l~~lD 343 (677)
T 1kb0_A 278 DNLYLASIVALDPDTGKYKWHYQETPGD--NW----DYTS-TQPMILADIKIAGKPRKVIL-HAP------KNGFFFVLD 343 (677)
T ss_dssp CCTTTTEEEEECTTTCCEEEEEESSTTC--CS----CCCC-CSCCEEEEEEETTEEEEEEE-ECC------TTSEEEEEE
T ss_pred CCeeeEEEEEEECCCCCEEEEEecCCCc--cc----cccc-CCCcEEEecccCCcEeeEEE-EEC------CCCEEEEEE
Confidence 333321 12211111111000 00 0000 0111223334488 5666 454 468999999
Q ss_pred CCCCcEEEEeccCC-Cc----------e------------------------eEEEEcCCCCeEEEEecCCC--------
Q 000992 209 RDSGTLQASSELKA-FM----------G------------------------AVLEWMPSGANIAAVYDRKS-------- 245 (1196)
Q Consensus 209 ~~~G~l~~~~e~~~-~~----------v------------------------~slawsPdG~~IAs~s~d~~-------- 245 (1196)
+.+|+++...+... .+ + ..++++|++.++.+...+..
T Consensus 344 ~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~ 423 (677)
T 1kb0_A 344 RTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKK 423 (677)
T ss_dssp TTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTT
T ss_pred CCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccc
Confidence 99999987654211 00 0 26799999988876543200
Q ss_pred -----------------------------CCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC
Q 000992 246 -----------------------------ENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE 295 (1196)
Q Consensus 246 -----------------------------~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~ 295 (1196)
......|.-|+. +|...-++... ..++...++++|.++.+++.++
T Consensus 424 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~~~g~~v~~g~~dg- 498 (677)
T 1kb0_A 424 WEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADG- 498 (677)
T ss_dssp CCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTS-
T ss_pred cccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC----CCCcCcceEeCCCEEEEECCCC-
Confidence 000145777885 45544333221 2344556778888999988888
Q ss_pred cceEEEEEecCCE
Q 000992 296 YDSVKICFFSNNH 308 (1196)
Q Consensus 296 ~~~V~lW~~~n~~ 308 (1196)
.++.||..+.+
T Consensus 499 --~l~a~D~~tG~ 509 (677)
T 1kb0_A 499 --RLVAYHAATGE 509 (677)
T ss_dssp --EEEEEETTTCC
T ss_pred --cEEEEECCCCc
Confidence 89999988764
No 253
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.62 E-value=1.3e-05 Score=93.22 Aligned_cols=182 Identities=10% Similarity=-0.022 Sum_probs=91.0
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT- 109 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~- 109 (1196)
+++.||+++.++.++.||. .+++..|+... +.+.+..+.+++..+++++.||.|..||..+++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~--~tG~~~W~~~~-------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSK--RTGSIKWTLKE-------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEET--TTCCEEEEEEC-------------CCSCCCC-----CCEEECTTTCCEEEC-----CCS
T ss_pred eCCEEEEEcCCCEEEEEEC--CCCCEEEEecC-------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee
Confidence 5789999999999999999 77777676541 1222333456787888888999999999977643
Q ss_pred EEeeee-cCcEEE-EEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc
Q 000992 110 EVVGRV-EGGVRF-ISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1196)
Q Consensus 110 e~vg~~-~~~I~~-~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~ 186 (1196)
.....+ ...+.+ ...+ ++..|++++.+++|..|+. +++.+-.... + ..+.++|+|.
T Consensus 73 w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~----------------~----~~~~~~p~~~ 131 (369)
T 2hz6_A 73 TKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS----------------A----FADSLSPSTS 131 (369)
T ss_dssp EECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------------------------
T ss_pred eeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC----------------C----CcccccccCC
Confidence 122111 111110 1111 4567778888899987652 2322211110 0 1234566787
Q ss_pred eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC---CeEEEEecCCCCCCCCeEEEEeC-CCeeE
Q 000992 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG---ANIAAVYDRKSENKCPSIVFYER-NGLER 262 (1196)
Q Consensus 187 ~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG---~~IAs~s~d~~~~~~~~V~~~e~-nGl~~ 262 (1196)
.+. +++ .++.|+.||..+|++....+... ..+.++.+++ ..+.+++.+ ..|..|+. +|...
T Consensus 132 ~v~-~~~------~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~d------g~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 132 LLY-LGR------TEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGD------GLVVTVDSESGDVL 196 (369)
T ss_dssp -EE-EEE------EEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETS------CEEEEECTTTCCEE
T ss_pred EEE-EEe------cCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCC------CEEEEEECCCCcEE
Confidence 777 555 24789999998998776543211 1233444442 445555553 46888885 56543
Q ss_pred E
Q 000992 263 S 263 (1196)
Q Consensus 263 ~ 263 (1196)
-
T Consensus 197 W 197 (369)
T 2hz6_A 197 W 197 (369)
T ss_dssp E
T ss_pred E
Confidence 3
No 254
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.62 E-value=2e-05 Score=91.53 Aligned_cols=180 Identities=12% Similarity=-0.030 Sum_probs=88.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccc
Q 000992 86 EKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFD 163 (1196)
Q Consensus 86 d~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~ 163 (1196)
++..+++++.||.|..||..+|++. .... +++.+..+.+||..+++++.|++|..|+. +++.+-....+.. ..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~---~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP---EL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH---HH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc---cc
Confidence 5788999999999999999887664 2222 55667778889989888889999988753 3332211111100 00
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecC
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d 243 (1196)
+. .+.....|| .++ +++ .++.|+.||..+|+.+.....+. ...++|+|..|.+++.+
T Consensus 83 ~~-----------~sp~~~~~~-~v~-~g~------~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~d 139 (369)
T 2hz6_A 83 VQ-----------ASPCRSSDG-ILY-MGK------KQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTE 139 (369)
T ss_dssp HT-----------TCSCC------CC-CCE------EEEEEEEECCC--------------------------EEEEEEE
T ss_pred cc-----------cCceEecCC-EEE-EEe------CCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecC
Confidence 00 001112344 444 344 35789999998999988765432 34678899998888764
Q ss_pred CCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCC---CeeEEEEccCCcceEEEEEecCC
Q 000992 244 KSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMS---DLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 244 ~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg---~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
..|..|+. +|...-.+.... ....++++++ ..+.+++.++ .|..|+..+.
T Consensus 140 ------g~v~a~d~~tG~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg---~v~a~d~~tG 193 (369)
T 2hz6_A 140 ------YTITMYDTKTRELRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDG---LVVTVDSESG 193 (369)
T ss_dssp ------EEEECCCSSSSSCCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSC---EEEEECTTTC
T ss_pred ------CEEEEEECCCCCEEEeEeccc-----ccCccccCCccccceEEEECCCC---EEEEEECCCC
Confidence 35888884 565433332211 1223344443 4566677777 7889987654
No 255
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.62 E-value=0.0018 Score=81.42 Aligned_cols=204 Identities=10% Similarity=0.051 Sum_probs=113.8
Q ss_pred EEeeecCCCEEEEEeCCC-------------------cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc
Q 000992 25 FSALDIEQNRLFFASSAN-------------------NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM 85 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~-------------------~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp 85 (1196)
..++|++++.||+++.++ .|+.+|. .+++..|...+.+.+... +.....++-.....
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~--~TG~~~W~~~~~~~d~wd--~~~~~~~~l~d~~~ 314 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNA--DTGEYVWHYQTTPGDAWD--YTATQHMILAELPI 314 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEET--TTCCEEEEEESSTTCCSC--CCCCSCEEEEEEEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEc--cCCceeEeeecCCccccc--ccCCCCcEEEeecc
Confidence 578999999999998765 3999999 788777775532211111 11112233333344
Q ss_pred CCC---EEEEEECCCcEEEEECCCCeEEE---eee------ec--------------------CcE-----------EEE
Q 000992 86 EKE---ALIVGTSSGLLLLHSVDGNATEV---VGR------VE--------------------GGV-----------RFI 122 (1196)
Q Consensus 86 d~~---~La~as~dG~I~lw~~~~~~~e~---vg~------~~--------------------~~I-----------~~~ 122 (1196)
+|+ .|+.++.+|.+..+|..++++.. ... ++ ..+ ..+
T Consensus 315 ~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~ 394 (689)
T 1yiq_A 315 DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPM 394 (689)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCC
T ss_pred CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcc
Confidence 776 78899999999999999886531 000 00 000 127
Q ss_pred EECCCCCEEEEEeCCceEEEEecc----Cce-----eeeee--cccc----------cCccccc-------cCccc-cCC
Q 000992 123 SPSPDGDLLGVTTGFGQILVMTHD----WDL-----LYENP--LEEL----------AEGFDVH-------EPELS-SSF 173 (1196)
Q Consensus 123 awSPDg~~LA~~s~d~tV~l~~~~----~d~-----~~~~~--l~~~----------~~~~~Vs-------~tqf~-~~~ 173 (1196)
+++|+..+|.+.+.+....++... |+. ..... ..+. .....+. +..|+ .+.
T Consensus 395 a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~ 474 (689)
T 1yiq_A 395 SYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV 474 (689)
T ss_dssp EEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES
T ss_pred eECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC
Confidence 899999998888765444333211 000 00000 0000 0000000 00011 001
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC-ceeEEEEcCCCCeEEE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAA 239 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~-~v~slawsPdG~~IAs 239 (1196)
.....-.+...|..+. +++ .|+.|++||.++|+++..++...+ ....++|+++|++.++
T Consensus 475 ~~~~~g~~~tagglvf-~gt------~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 475 TIFNGGTLSTAGNLVF-EGS------ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp SSCCCCEEEETTTEEE-EEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCccCccceECCCEEE-EEC------CCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 1112224445565555 454 479999999999999988764333 3367889999985443
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.60 E-value=0.0042 Score=68.11 Aligned_cols=182 Identities=13% Similarity=0.038 Sum_probs=114.9
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE-EEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL-IVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~L-a~as~dG~I 99 (1196)
-.+++.|+ ++.||.++. ++.|..+|+ .+++...++ ++.. ..--++++ +++.| ++...++.+
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~--~Tgkv~~~~--l~~~---------~FgeGit~--~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSL--ESAQPVWME--RLGN---------IFAEGLAS--DGERLYQLTWTEGLL 118 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCS--SCSSCSEEE--ECTT---------CCEEEEEE--CSSCEEEEESSSCEE
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEEC--CCCcEEeEE--CCCC---------cceeEEEE--eCCEEEEEEccCCEE
Confidence 34678887 589999866 567889999 666653222 2222 11233444 44444 445578899
Q ss_pred EEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 100 LLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 100 ~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
.+||..+.+.. .+.. .+ .....++||+.|..+.++++|.+++ ..+..+..+..... +..+ ....
T Consensus 119 ~V~D~~Tl~~~~ti~~-~~--eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~--g~~v---------~~lN 184 (268)
T 3nok_A 119 FTWSGMPPQRERTTRY-SG--EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR--GQPV---------ELIN 184 (268)
T ss_dssp EEEETTTTEEEEEEEC-SS--CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEET--TEEC---------CCEE
T ss_pred EEEECCcCcEEEEEeC-CC--ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC--Cccc---------cccc
Confidence 99999986542 2221 11 1123347899998888888898876 44565555554332 2222 2346
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-------------CCceeEEEEcCCCCeEEEEec
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-------------AFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-------------~~~v~slawsPdG~~IAs~s~ 242 (1196)
.+.|. ||+.+| ... ....|.+-|..+|+...+..-. ..--+.|||.|+++.|-.++.
T Consensus 185 eLe~~-dG~lya-nvw------~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 185 ELECA-NGVIYA-NIW------HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEE-TTEEEE-EET------TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ccEEe-CCEEEE-EEC------CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 67888 898877 333 2468888999999988765311 123488999999887766654
No 257
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.58 E-value=0.0012 Score=82.90 Aligned_cols=206 Identities=12% Similarity=0.112 Sum_probs=115.2
Q ss_pred eEEeeecCCCEEEEEeCCC-------------------cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEc
Q 000992 24 QFSALDIEQNRLFFASSAN-------------------NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYL 84 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~-------------------~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~s 84 (1196)
...++|++++.||+.+.+. .|+.+|. .+++..|...+.+.+.- ++.....+.-+...
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~--~TG~~~W~~~~~~~d~w--d~~~~~~p~l~~~~ 321 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP--DTGKYKWHYQETPGDNW--DYTSTQPMILADIK 321 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT--TTCCEEEEEESSTTCCS--CCCCCSCCEEEEEE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC--CCCCEEEEEecCCCccc--ccccCCCcEEEecc
Confidence 3578999999999997653 4999999 77887777653222110 01111234444555
Q ss_pred cCC---CEEEEEECCCcEEEEECCCCeEE-E--eeeec--------C-cE------------------------EEEEEC
Q 000992 85 MEK---EALIVGTSSGLLLLHSVDGNATE-V--VGRVE--------G-GV------------------------RFISPS 125 (1196)
Q Consensus 85 pd~---~~La~as~dG~I~lw~~~~~~~e-~--vg~~~--------~-~I------------------------~~~awS 125 (1196)
.|| ..|++++.+|.|.++|..++++. . ++... + .+ ..+++|
T Consensus 322 ~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d 401 (677)
T 1kb0_A 322 IAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN 401 (677)
T ss_dssp ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE
T ss_pred cCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEc
Confidence 688 78999999999999999988653 1 11000 0 01 157899
Q ss_pred CCCCEEEEEeCCceEEEEecc-Cce--------------eeee--eccc--ccCccccc-------cCccc-cCCCCeEE
Q 000992 126 PDGDLLGVTTGFGQILVMTHD-WDL--------------LYEN--PLEE--LAEGFDVH-------EPELS-SSFSFKSP 178 (1196)
Q Consensus 126 PDg~~LA~~s~d~tV~l~~~~-~d~--------------~~~~--~l~~--~~~~~~Vs-------~tqf~-~~~~~v~~ 178 (1196)
|++.++.+.+.+-...++... |.. ..+. .... ......|. +..|+ .+......
T Consensus 402 p~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~ 481 (677)
T 1kb0_A 402 PQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNG 481 (677)
T ss_dssp TTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred CCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcC
Confidence 999988887654222221100 000 0000 0000 00000000 00000 01111233
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-CCCceeEEEEcCCCCeEEEE
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-~~~~v~slawsPdG~~IAs~ 240 (1196)
...+.+|..+. +++ .++.+++||..+|+.+..+.- .......+.|+++|++..+.
T Consensus 482 g~~~~~g~~v~-~g~------~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 482 GTLTTAGNVVF-QGT------ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp CEEEETTTEEE-EEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cceEeCCCEEE-EEC------CCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 34556666666 454 468999999999999988763 33334678888999755443
No 258
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=0.061 Score=68.35 Aligned_cols=247 Identities=11% Similarity=-0.012 Sum_probs=150.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++..|.++. |++++.+++|..++. ..+... .....+.. ....-++...|.+|...++|. |-+|+.++-|..
T Consensus 314 ~v~~i~~D~~g~-lWigt~~~Gl~~~~~--~~~~~~-~~~~~~~~-~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~ 387 (781)
T 3v9f_A 314 SARYIFQDSFNN-IWIGTWGGGINFISN--APPTFH-TWSYSPTQ-MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINV 387 (781)
T ss_dssp CEEEEEECSSCC-EEEEEBSSCEEEECS--SCCSCE-EEC----C-CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEE
T ss_pred eEEEEEEeCCCC-EEEEecCCeEEEeCC--CCCcce-eeccCccc-cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEE
Confidence 678888998765 899998788999987 333321 01000000 000112346799998888876 556776666889
Q ss_pred EECCCCeEEEe----eeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 102 HSVDGNATEVV----GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 102 w~~~~~~~e~v----g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
|+..++..... +.....|.++...++|.+.+ ++.++-|..++..-......... . .....|.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~--~-----------~~~~~v~ 453 (781)
T 3v9f_A 388 FENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELE--K-----------NELLDVR 453 (781)
T ss_dssp EETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCST--T-----------TCCCCEE
T ss_pred EECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccC--C-----------CCCCeEE
Confidence 99887655421 22246799999999988766 66555566554321111111100 0 1124678
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-----CCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-----AFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-----~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
+|...++|.+.+ ++ . .-+.+||..+++........ ...+.++...++|++.+++... .+
T Consensus 454 ~i~~d~~g~lwi--gt------~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~-------Gl 517 (781)
T 3v9f_A 454 VFYEDKNKKIWI--GT------H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG-------GV 517 (781)
T ss_dssp EEEECTTSEEEE--EE------T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSS-------CE
T ss_pred EEEECCCCCEEE--EE------C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCC-------CE
Confidence 999999998776 33 1 35778898777665433222 3567899999999987765422 36
Q ss_pred EEEeCCCeeEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 253 VFYERNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~l~~-~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
..|+.++.....|.... -....|.+|...++|.+.++.. .+ .|..|+..+.+
T Consensus 518 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~G---lv~~~d~~~~~ 570 (781)
T 3v9f_A 518 GIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EG---LVCFPSARNFD 570 (781)
T ss_dssp EEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TE---EEEESCTTTCC
T ss_pred EEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CC---ceEEECCCCCc
Confidence 67776654333232111 1135699999999999776654 55 22777766543
No 259
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.56 E-value=0.0048 Score=77.56 Aligned_cols=247 Identities=10% Similarity=0.070 Sum_probs=135.4
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeecc-ccccccccCCCCCCEEEEEEccCCCEEEEEE------CCCcEEEEE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAI-SAEIEHIDLEPGDSITAFDYLMEKEALIVGT------SSGLLLLHS 103 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~v~~v~~spd~~~La~as------~dG~I~lw~ 103 (1196)
+++.||+++.++.++.+|. .+++..|+.... +... .... ....++ .++ .+++++ .+|.|.-||
T Consensus 120 ~~g~v~v~~~dg~l~AlDa--~TG~~~W~~~~~~~~~~-~~~~-~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D 189 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDA--KTGQRAWSVDTRADHKR-SYTI-TGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYD 189 (689)
T ss_dssp ETTEEEEECTTSEEEEEET--TTCCEEEEEECCSCTTS-CCBC-CSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEE
T ss_pred ECCEEEEEccCCEEEEEEC--CCCCEeeeecCcCCCCC-Cccc-cCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEE
Confidence 4688999999999999999 778776775421 1000 0000 011111 144 344443 268899999
Q ss_pred CCCCeEE-Eeee------------------------------ecCcE-EEEEECCCCCEEEEEeCCce------------
Q 000992 104 VDGNATE-VVGR------------------------------VEGGV-RFISPSPDGDLLGVTTGFGQ------------ 139 (1196)
Q Consensus 104 ~~~~~~e-~vg~------------------------------~~~~I-~~~awSPDg~~LA~~s~d~t------------ 139 (1196)
..+|++. .... -.+.+ ..++++|++.+|.+++++++
T Consensus 190 ~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~g 269 (689)
T 1yiq_A 190 AETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKG 269 (689)
T ss_dssp TTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCS
T ss_pred CCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCC
Confidence 9887653 1110 00111 26789999999999998875
Q ss_pred -------EEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc---eEEEeeccccccCCCCEEEEEE
Q 000992 140 -------ILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK---YFATLSEFCNSSKLHKRLKVWE 208 (1196)
Q Consensus 140 -------V~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~---~lAsvss~d~~~~~d~~irVWd 208 (1196)
|.-++ .+++.+-.......+ .... .............||+ .++ +++ .++.+.++|
T Consensus 270 d~~y~~~v~AlD~~TG~~~W~~~~~~~d-~wd~------~~~~~~~l~d~~~~G~~~~~v~-~~~------~~G~l~~lD 335 (689)
T 1yiq_A 270 DNLFLSSIVAVNADTGEYVWHYQTTPGD-AWDY------TATQHMILAELPIDGKPRKVLM-QAP------KNGFFYVID 335 (689)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTC-CSCC------CCCSCEEEEEEEETTEEEEEEE-ECC------TTSEEEEEE
T ss_pred CceeeeeEEEEEccCCceeEeeecCCcc-cccc------cCCCCcEEEeeccCCcEEEEEE-EEC------CCCeEEEEE
Confidence 44433 122222111111000 0000 0001111112223665 566 443 468999999
Q ss_pred CCCCcEEEEeccCC-Cc--------------------------------------eeEEEEcCCCCeEEEEecCCC----
Q 000992 209 RDSGTLQASSELKA-FM--------------------------------------GAVLEWMPSGANIAAVYDRKS---- 245 (1196)
Q Consensus 209 ~~~G~l~~~~e~~~-~~--------------------------------------v~slawsPdG~~IAs~s~d~~---- 245 (1196)
+.+|+++...+-.. .+ -..++++|+..++.+...+..
T Consensus 336 ~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~ 415 (689)
T 1yiq_A 336 RATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYE 415 (689)
T ss_dssp TTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEE
T ss_pred CCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeee
Confidence 99999985322100 00 124799999888877643210
Q ss_pred --CC---------------------------------CCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000992 246 --EN---------------------------------KCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 246 --~~---------------------------------~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs 289 (1196)
.. -...|.-||. +|...-++.... .+..-.++..|.++.+
T Consensus 416 ~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~ 491 (689)
T 1yiq_A 416 HIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT----IFNGGTLSTAGNLVFE 491 (689)
T ss_dssp CCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEE
T ss_pred eccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC----CccCccceECCCEEEE
Confidence 00 0145777885 455443332221 2333466778889999
Q ss_pred EEccCCcceEEEEEecCCE
Q 000992 290 VVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 290 ~~~d~~~~~V~lW~~~n~~ 308 (1196)
++.|+ .++.||..+.+
T Consensus 492 gt~dg---~l~a~D~~tG~ 507 (689)
T 1yiq_A 492 GSADG---RVIAYAADTGE 507 (689)
T ss_dssp ECTTS---EEEEEETTTCC
T ss_pred ECCCC---cEEEEECCCCc
Confidence 98888 89999988764
No 260
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.56 E-value=0.0049 Score=71.82 Aligned_cols=166 Identities=7% Similarity=0.007 Sum_probs=111.8
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc---CCCcH---HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM---GDSYH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~---g~~~~---~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
+..+.+....|+|++|+..|.++ .+... -....++.+. +.|++|++.+ .+|. ...++...|..+...
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE-GEPRKAISDLKAASKLKND-NTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 44455667789999999998764 22211 1223445667 8888888877 1222 245677788888899
Q ss_pred cCHHHHHHHHHhCCC----HHHH----------------HHHHHHcCCHHHHHHHHhhc----CCCHHHHHHHHHHHHHH
Q 000992 1004 KCFEDAATTYFCCSS----LEKA----------------MKAYRASGNWSGVLTVAGLL----KLGKDEVAKLAQELCEE 1059 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag~----~~kA----------------l~~y~~~g~w~~al~la~~l----~~~~~~~~~l~~~la~~ 1059 (1196)
+++++|...|.++-. ...+ ..+|...|+|++|+.+..+. +.++.....+...+|..
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 999999998887621 1111 56778888888888655442 22222224567788889
Q ss_pred HHHcCChHHHHHHHHHhc----CC---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1060 LQALGKPGEAAKIALDYC----GD---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1060 L~~~~~~~eAa~i~~~yl----~d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
+...|++.+|...|.+.+ ++ .-....+|.+.++|++|+....+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999887743 12 23345678888999999876654
No 261
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=0.0025 Score=75.53 Aligned_cols=157 Identities=11% Similarity=-0.020 Sum_probs=97.9
Q ss_pred CCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-Cc----eEEEEeccCce
Q 000992 76 DSITAFDYLM-EKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FG----QILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~----tV~l~~~~~d~ 149 (1196)
..+..|+++| ++..|.++...+.|..+|.+++.+..+.........++|+|||++|.++.. ++ .+...++....
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 4678999998 466677766668899999998877644333456889999999996666653 21 23333333222
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAV 227 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~s 227 (1196)
.....+... .....+++.| +|.+++ +.. ....|.+++..++...... .+....-..
T Consensus 217 ~~~~~l~~~---------------~~p~giavdp~~g~lyv-~d~------~~~~V~~~~~~~~~~~~~~~~~~~~~P~g 274 (430)
T 3tc9_A 217 KVITELTKG---------------QNCNGAETHPINGELYF-NSW------NAGQVFRYDFTTQETTPLFTIQDSGWEFH 274 (430)
T ss_dssp CSEEEEEEC---------------SSCCCEEECTTTCCEEE-EET------TTTEEEEEETTTTEEEEEEECSSSSCCEE
T ss_pred eeeeeeccC---------------CCceEEEEeCCCCEEEE-EEC------CCCEEEEEECCCCcEEEEEEcCCCCccee
Confidence 110111100 1235788999 777666 332 3578999999555542222 222234578
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
|+|+|+|++|..+... .+.|..++.+|
T Consensus 275 ia~~pdG~~lyv~d~~-----~~~I~~~~~d~ 301 (430)
T 3tc9_A 275 IQFHPSGNYAYIVVVN-----QHYILRSDYDW 301 (430)
T ss_dssp EEECTTSSEEEEEETT-----TTEEEEEEEET
T ss_pred EEEcCCCCEEEEEECC-----CCEEEEEeCCc
Confidence 9999999966555443 35787777654
No 262
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.54 E-value=0.0065 Score=67.69 Aligned_cols=167 Identities=9% Similarity=0.021 Sum_probs=109.1
Q ss_pred hhhcccHHHHhhCHHHHHHHHHHc---CCCcHH---HHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000992 934 LLMRYTIDLRLQRFENALKHIVSM---GDSYHA---DCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 934 ~~~r~~Id~~L~ry~~Al~~l~~~---g~~~~~---~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1196)
....+.+...+|+|++|++.|.++ .+...+ ..-...... +.|++|++.+ .+|. ...++..+|..+..
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKE-GEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 445567778899999999998875 222211 122334566 7888888877 2332 34567788888888
Q ss_pred ccCHHHHHHHHHhCCC----HHH----------------HHHHHHHcCCHHHHHHHHhhc----CCCHHHHHHHHHHHHH
Q 000992 1003 VKCFEDAATTYFCCSS----LEK----------------AMKAYRASGNWSGVLTVAGLL----KLGKDEVAKLAQELCE 1058 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ag~----~~k----------------Al~~y~~~g~w~~al~la~~l----~~~~~~~~~l~~~la~ 1058 (1196)
.+++++|...|.++-. ... ...+|...|++++|+....+. +.++.-.......+|.
T Consensus 201 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICH 280 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 9999999888877621 111 145577788888888655432 2222222345666888
Q ss_pred HHHHcCChHHHHHHHHHhcC----CH---HHHHHHHHHhcCHHHHHHHHHh
Q 000992 1059 ELQALGKPGEAAKIALDYCG----DV---TNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1059 ~L~~~~~~~eAa~i~~~yl~----d~---~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+...|++.+|...|.+.+. ++ -....+|.+.++|++|+....+
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88889999999988877432 22 2345667788888888765443
No 263
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.51 E-value=0.0031 Score=76.64 Aligned_cols=160 Identities=7% Similarity=-0.128 Sum_probs=80.3
Q ss_pred cHHHHhhCHHHHHHHHHHc---CCCc---HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHH
Q 000992 939 TIDLRLQRFENALKHIVSM---GDSY---HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFE 1007 (1196)
Q Consensus 939 ~Id~~L~ry~~Al~~l~~~---g~~~---~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~ 1007 (1196)
.+....|++++|++.|.++ .+.. +......+.++ +.|++|+++| .+|. ....+...|.-+...++++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE-GEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHH
Confidence 3444556667776666643 2211 12223344555 6666666665 1221 2234444555556666666
Q ss_pred HHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000992 1008 DAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-------KLGKDEVAKLAQELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 1008 eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-------~~~~~~~~~l~~~la~~L~~~~~~~eAa~i 1072 (1196)
+|..+|.++-. +.....+|.+.|++++|+.+..+. +.+++........++..+...|++++|.++
T Consensus 459 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666655411 223335555566666665544332 112222234555666666666666666666
Q ss_pred HHHhcC----C---HHHHHHHHHHhcCHHHHHHHH
Q 000992 1073 ALDYCG----D---VTNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1073 ~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla 1100 (1196)
|.+.+. + ...-..+|.+.++|++|....
T Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 655321 2 123345566666666665544
No 264
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.50 E-value=0.057 Score=61.04 Aligned_cols=186 Identities=15% Similarity=0.091 Sum_probs=106.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCC-eEEEeee----ecCcEEEEEECCCCCEEEEEeCCceEEEEe---ccC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-ATEVVGR----VEGGVRFISPSPDGDLLGVTTGFGQILVMT---HDW 147 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~-~~e~vg~----~~~~I~~~awSPDg~~LA~~s~d~tV~l~~---~~~ 147 (1196)
..+.+|.|.+++..++ ++..|.| +...+++ ..+.+.. ....+.+++|+| ++..+ ++..+.|..-+ +.|
T Consensus 36 ~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~S~DgG~tW 111 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLHTTDGGQSW 111 (327)
T ss_dssp SCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEEESSTTSSC
T ss_pred CcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEEECCCCCCc
Confidence 4689999988888777 5567765 4556654 3343321 134689999987 45554 45566554321 224
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc-EEEEeccCCCcee
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGA 226 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~e~~~~~v~ 226 (1196)
..+.... .....+..|.+.+++..+| ++. ....+|-+| .|+ -.....+..+.+.
T Consensus 112 ~~~~~~~----------------~~~~~~~~i~~~~~~~~~~-~~~------~g~v~~S~D--gG~tW~~~~~~~~~~~~ 166 (327)
T 2xbg_A 112 SQIPLDP----------------KLPGSPRLIKALGNGSAEM-ITN------VGAIYRTKD--SGKNWQALVQEAIGVMR 166 (327)
T ss_dssp EECCCCT----------------TCSSCEEEEEEEETTEEEE-EET------TCCEEEESS--TTSSEEEEECSCCCCEE
T ss_pred eECcccc----------------CCCCCeEEEEEECCCCEEE-EeC------CccEEEEcC--CCCCCEEeecCCCcceE
Confidence 3322100 0112357788888898887 553 112334333 243 3333345556678
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEE-EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEE
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVF-YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~-~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~ 303 (1196)
.+++.|+|.++|.+... .+.. .+..|..-... ..+....+..++++|++++++++ .++ .+.+++
T Consensus 167 ~~~~~~~~~~~~~g~~G-------~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~~~-~~G---~~~~s~ 231 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSSRG-------SFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWMIV-NGG---KIAFSD 231 (327)
T ss_dssp EEEECTTSCEEEEETTS-------SEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEEEE-TTT---EEEEEE
T ss_pred EEEEcCCCcEEEEECCC-------cEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEEEEe-CCc---eEEEec
Confidence 99999999999877542 2322 22213221211 12223568899999999877654 455 566654
No 265
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.49 E-value=0.0087 Score=68.79 Aligned_cols=21 Identities=14% Similarity=-0.061 Sum_probs=14.0
Q ss_pred cccHHHHhhCHHHHHHHHHHc
Q 000992 937 RYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
.+.+...+|+|++|+.+|.++
T Consensus 132 l~~~~~~~g~~~~A~~~~~~a 152 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERH 152 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 345666677777777776654
No 266
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.49 E-value=0.0048 Score=68.77 Aligned_cols=177 Identities=12% Similarity=0.016 Sum_probs=111.5
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCcccccc
Q 000992 87 KEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 87 ~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
+..|.+++.+|.|..+|..+...-........+.++...+||. |.+++.++.|..++............
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~~~~~~~~~---------- 175 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPDGTEKWRFKTN---------- 175 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTTSCEEEEEECS----------
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCCCCEeEEEecC----------
Confidence 5567788889999999998433222222234466778888887 45577778888776543333222211
Q ss_pred CccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCC
Q 000992 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 167 tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
...+.++...++|..++ ++ +.|..||. +|+...........+.+++..++|++.+++..
T Consensus 176 ------~~~~~~~~~d~~g~l~v--~t--------~~l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~---- 234 (330)
T 3hxj_A 176 ------DAITSAASIGKDGTIYF--GS--------DKVYAINP-DGTEKWNFYAGYWTVTRPAISEDGTIYVTSLD---- 234 (330)
T ss_dssp ------SCCCSCCEECTTCCEEE--ES--------SSEEEECT-TSCEEEEECCSSCCCSCCEECTTSCEEEEETT----
T ss_pred ------CCceeeeEEcCCCEEEE--Ee--------CEEEEECC-CCcEEEEEccCCcceeceEECCCCeEEEEcCC----
Confidence 12345667778898776 32 35778895 88888776655566788999999987776532
Q ss_pred CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
..|..++.+|.....+... ...+..+...++|.+ .+++.++ .|..++..
T Consensus 235 ---~gl~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l-~v~t~~g---gl~~~d~~ 283 (330)
T 3hxj_A 235 ---GHLYAINPDGTEKWRFKTG---KRIESSPVIGNTDTI-YFGSYDG---HLYAINPD 283 (330)
T ss_dssp ---TEEEEECTTSCEEEEEECS---SCCCSCCEECTTSCE-EEECTTC---EEEEECTT
T ss_pred ---CeEEEECCCCCEeEEeeCC---CCccccceEcCCCeE-EEecCCC---CEEEECCC
Confidence 3577778888665444322 122334556667754 4555554 47777753
No 267
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0016 Score=67.01 Aligned_cols=124 Identities=16% Similarity=0.088 Sum_probs=93.2
Q ss_pred HhhcChHHHHHHHHhccChhHHHHHHHHhcCCcchhhHHHHHHhcCChhhhc-ccHHHHhhCHHHHHHHHHHcCCCcHHH
Q 000992 886 LWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMR-YTIDLRLQRFENALKHIVSMGDSYHAD 964 (1196)
Q Consensus 886 ~~L~d~~~Ly~~ALg~yD~~lal~vAq~sq~DpkeYlpfL~~L~~l~~~~~r-~~Id~~L~ry~~Al~~l~~~g~~~~~~ 964 (1196)
-|..|.+.=|+-||..=|++.|+.+|+.. .++. .|++ .+.... .|. ++.
T Consensus 3 ~~~~D~~~rF~LAL~lg~l~~A~e~a~~l-~~~~--------------~Wk~Lg~~AL~-------------~gn--~~l 52 (177)
T 3mkq_B 3 QFVQDPHIRFDLALEYGNLDAALDEAKKL-NDSI--------------TWERLIQEALA-------------QGN--ASL 52 (177)
T ss_dssp TTSSCHHHHHHHHHHTTCHHHHHHHHHHH-CCHH--------------HHHHHHHHHHH-------------TTC--HHH
T ss_pred cccCChHHHHHHHHhcCCHHHHHHHHHHh-CCHH--------------HHHHHHHHHHH-------------cCC--hHH
Confidence 35678888999999999999998888765 2221 1211 222222 333 566
Q ss_pred HHHHHHHHhcChHHHHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhh
Q 000992 965 CLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL 1041 (1196)
Q Consensus 965 ale~~~~~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~ 1041 (1196)
|.+.+.+. +.|...+=|| ++.+.+. ..|+--+.++++.-|+..|...|++++++++|.+.|+|.+|...|+.
T Consensus 53 Ae~cy~~~-~D~~~L~~Ly~~tg~~e~L~----kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t 127 (177)
T 3mkq_B 53 AEMIYQTQ-HSFDKLSFLYLVTGDVNKLS----KMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKA 127 (177)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHTCHHHHH----HHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHh-CCHHHHHHHHHHhCCHHHHH----HHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHH
Confidence 66666666 7787777777 5665555 45577788999999999999999999999999999999999999998
Q ss_pred cCC
Q 000992 1042 LKL 1044 (1196)
Q Consensus 1042 l~~ 1044 (1196)
+++
T Consensus 128 ~g~ 130 (177)
T 3mkq_B 128 NGD 130 (177)
T ss_dssp TTC
T ss_pred cCc
Confidence 774
No 268
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.47 E-value=0.0021 Score=71.42 Aligned_cols=53 Identities=17% Similarity=-0.093 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcC------C--------HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALDYCG------D--------VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~yl~------d--------~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
......+|..+...|+|.+|...|.+-+. + .-....+|...+++++|+....+
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677889999999999999999887431 1 13345678888999999876655
No 269
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.42 E-value=0.029 Score=66.28 Aligned_cols=238 Identities=8% Similarity=-0.014 Sum_probs=131.5
Q ss_pred ceeEEeeecC--CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC--
Q 000992 22 ILQFSALDIE--QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG-- 97 (1196)
Q Consensus 22 ~~~~~~~d~~--~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG-- 97 (1196)
.+.+++||++ .+.||++...+.|..+++ ..+... + +.. ....+.+|+++|+|+ |.++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~--~~g~v~----~----~~~----~~~~P~giavd~dG~-lyVad~~~~~ 204 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDF--VNQYVD----I----KTT----NIGQCADVNFTLNGD-MVVVDDQSSD 204 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEET--TTTEEE----E----ECC----CCSCEEEEEECTTCC-EEEEECCSCT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEEC--CCCEEE----E----eec----CCCCccEEEECCCCC-EEEEcCCCCc
Confidence 4678999995 788999865577999988 444321 1 111 235799999999999 55554322
Q ss_pred ---cEEEEECCCCeE--EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccc
Q 000992 98 ---LLLLHSVDGNAT--EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELS 170 (1196)
Q Consensus 98 ---~I~lw~~~~~~~--e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~ 170 (1196)
.+...+..++.. ..+.. -..-..++++| +|.+.++-..++.|..++.. ........ ....
T Consensus 205 ~~~gv~~~~~~~~~~~~~~~~~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~~~~----------- 271 (433)
T 4hw6_A 205 TNTGIYLFTRASGFTERLSLCN-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-MMDT----------- 271 (433)
T ss_dssp TSEEEEEECGGGTTCCEEEEEE-CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-ECSC-----------
T ss_pred ccceEEEEECCCCeeccccccc-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-ccCC-----------
Confidence 233344433211 12221 23346688999 67766655567778776543 22211111 1000
Q ss_pred cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CCcEE--EEec---cCCC------------ceeEEEE-
Q 000992 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQ--ASSE---LKAF------------MGAVLEW- 230 (1196)
Q Consensus 171 ~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G~l~--~~~e---~~~~------------~v~slaw- 230 (1196)
...-..|+|+|||++|- ++. ...+.|+.++.+ +|.+. .+.. +..+ .-..+++
T Consensus 272 --~~~~~~ia~dpdG~~LY-vad-----~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~ 343 (433)
T 4hw6_A 272 --KGSNFHIVWHPTGDWAY-IIY-----NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFV 343 (433)
T ss_dssp --CSSCEEEEECTTSSEEE-EEE-----TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEE
T ss_pred --CCCcccEEEeCCCCEEE-EEe-----CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEE
Confidence 01124699999999554 332 245788887753 34321 1111 1111 2356999
Q ss_pred --------cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEecc-------CC-------CCcEEEEEEc-cCCCee
Q 000992 231 --------MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE-------QI-------DSTVELLKWN-CMSDLL 287 (1196)
Q Consensus 231 --------sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~-------~~-------~~~V~~laWS-pDg~~L 287 (1196)
.++|++..+-.. .+.|+.++.+|.....+-... .+ -.....|+++ ++|.+.
T Consensus 344 ~n~~y~~dd~~g~lyvaD~~------n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~ly 417 (433)
T 4hw6_A 344 KNEAYAGEEDEYDFYFCDRD------SHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFY 417 (433)
T ss_dssp ECGGGTTSSCCEEEEEEETT------TTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEE
T ss_pred ccccccccCCCCcEEEEECC------CCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEE
Confidence 778876655332 468999998885432110000 00 0236789999 566554
Q ss_pred EEEEccCCcceEEEEEe
Q 000992 288 AAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 288 As~~~d~~~~~V~lW~~ 304 (1196)
.+=.... .|+..+.
T Consensus 418 VaD~~n~---rIr~i~~ 431 (433)
T 4hw6_A 418 IGDCDNH---RVRKIAP 431 (433)
T ss_dssp EEEGGGT---EEEEEEE
T ss_pred EEeCCCC---EEEEEec
Confidence 4433333 6666654
No 270
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.40 E-value=0.0021 Score=78.10 Aligned_cols=195 Identities=11% Similarity=0.020 Sum_probs=110.2
Q ss_pred ceeEEee-e-cCCCEEEEEeCC------------------CcEEEEecccccccccceeeccccccccccCCCCCCEEEE
Q 000992 22 ILQFSAL-D-IEQNRLFFASSA------------------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAF 81 (1196)
Q Consensus 22 ~~~~~~~-d-~~~~~l~~~s~~------------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v 81 (1196)
.+.++++ . +++..||+.++. +.+-.+|. .+.+..++|. . ++..-.+
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~--~t~~v~~qI~---V---------gg~pd~~ 200 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA--DKWEVAWQVL---V---------SGNLDNC 200 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET--TTTEEEEEEE---E---------SSCCCCE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC--CCCeEEEEEE---e---------CCCccce
Confidence 5677887 4 899999998632 23445565 3333333332 1 1234567
Q ss_pred EEccCCCEEEEEECCC--------------------------------------cEEEEECCC--C-e-EEEeeeecCcE
Q 000992 82 DYLMEKEALIVGTSSG--------------------------------------LLLLHSVDG--N-A-TEVVGRVEGGV 119 (1196)
Q Consensus 82 ~~spd~~~La~as~dG--------------------------------------~I~lw~~~~--~-~-~e~vg~~~~~I 119 (1196)
+.+|||+.+.+++.+. .|.+.|..+ + . +..+. .....
T Consensus 201 ~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~P 279 (595)
T 1fwx_A 201 DADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNP 279 (595)
T ss_dssp EECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSC
T ss_pred EECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCc
Confidence 7899999998888553 467777765 2 2 22221 12345
Q ss_pred EEEEECCCCCEEEEEe-CCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc
Q 000992 120 RFISPSPDGDLLGVTT-GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1196)
Q Consensus 120 ~~~awSPDg~~LA~~s-~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~ 197 (1196)
.++.+||||+++.+++ .+++|.+.+-. .+....-.+.... ..+.+ . .-..+-..++|+|||..+. +..
T Consensus 280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~--~v~~~--v-~vG~gP~h~aF~~dG~aY~-t~~---- 349 (595)
T 1fwx_A 280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS--AVVAE--P-ELGLGPLHTAFDGRGNAYT-SLF---- 349 (595)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG--GEEEC--C-BCCSCEEEEEECTTSEEEE-EET----
T ss_pred eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc--ceEEE--c-CCCCCcceEEECCCCeEEE-EEe----
Confidence 6789999999887775 57788776522 1000000010000 00000 0 0112457899999993333 343
Q ss_pred cCCCCEEEEEECCC----------CcEEEEeccCCCce-----eEEEEcCCCCeEEEEecC
Q 000992 198 SKLHKRLKVWERDS----------GTLQASSELKAFMG-----AVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 198 ~~~d~~irVWd~~~----------G~l~~~~e~~~~~v-----~slawsPdG~~IAs~s~d 243 (1196)
-+.+|-+||.++ .+.+.+..-+-... ..++.+|||+++.++...
T Consensus 350 --ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 350 --LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp --TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred --cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 358899999855 34555544322111 223458999999888653
No 271
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.38 E-value=0.16 Score=57.78 Aligned_cols=234 Identities=9% Similarity=0.010 Sum_probs=119.3
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e 110 (1196)
+++.||+++.++.++.+|. .+++..|+.. ++.... ........+. -....++..+.+++.+|.|..+|..+++..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~--~tG~~~W~~~-~~~~~~-~~~~~~~~~~-~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~ 126 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNA--DDGKEIWSVS-LAEKDG-WFSKEPALLS-GGVTVSGGHVYIGSEKAQVYALNTSDGTVA 126 (376)
T ss_dssp ETTEEEEECTTSEEEEEET--TTCCEEEEEE-CCC----CCSCCCCCEE-EEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCeEEEEEc--cCCceeeeec-Cccccc-cccccCcccc-cCceEeCCEEEEEcCCCEEEEEECCCCCEE
Confidence 4789999998888999999 6777666653 111100 0000011222 222335677888999999999999887653
Q ss_pred -EeeeecCcEEE-EEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCce
Q 000992 111 -VVGRVEGGVRF-ISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1196)
Q Consensus 111 -~vg~~~~~I~~-~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~ 187 (1196)
... ....+.+ ... ++..|.+++.++.|..++. +++.+-......... .. ... ....+. +|..
T Consensus 127 W~~~-~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~--~~-----~~~--~~~~~~---~~~v 191 (376)
T 3q7m_A 127 WQTK-VAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL--SL-----RGE--SAPTTA---FGAA 191 (376)
T ss_dssp EEEE-CSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC------------CCC--CCCEEE---TTEE
T ss_pred EEEe-CCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce--ee-----cCC--CCcEEE---CCEE
Confidence 111 1111111 111 2457777888888877763 444332222211000 00 000 111122 4544
Q ss_pred EEEeeccccccCCCCEEEEEECCCCcEEEEeccCC--Cc-----eeEEEEcC--CCCeEEEEecCCCCCCCCeEEEEeC-
Q 000992 188 FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA--FM-----GAVLEWMP--SGANIAAVYDRKSENKCPSIVFYER- 257 (1196)
Q Consensus 188 lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~--~~-----v~slawsP--dG~~IAs~s~d~~~~~~~~V~~~e~- 257 (1196)
++ ++ .++.+..+|..+|+......... +. ...+.-+| .+..|..++.+ ..|..++.
T Consensus 192 ~~--g~------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~------g~l~~~d~~ 257 (376)
T 3q7m_A 192 VV--GG------DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYN------GNLTALDLR 257 (376)
T ss_dssp EE--CC------TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTT------SCEEEEETT
T ss_pred EE--Ec------CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecC------cEEEEEECC
Confidence 44 43 35789999998999887654211 00 00011122 23444444443 34777774
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+|...-.+ +. .....+.. ++..|.+++.++ .|..++..+.+
T Consensus 258 tG~~~w~~--~~---~~~~~~~~--~~~~l~~~~~~g---~l~~~d~~tG~ 298 (376)
T 3q7m_A 258 SGQIMWKR--EL---GSVNDFIV--DGNRIYLVDQND---RVMALTIDGGV 298 (376)
T ss_dssp TCCEEEEE--CC---CCEEEEEE--ETTEEEEEETTC---CEEEEETTTCC
T ss_pred CCcEEeec--cC---CCCCCceE--ECCEEEEEcCCC---eEEEEECCCCc
Confidence 56543322 21 12333332 455666666665 68888876643
No 272
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.36 E-value=0.017 Score=68.33 Aligned_cols=156 Identities=14% Similarity=0.104 Sum_probs=93.4
Q ss_pred CCEEEEEEccC--CCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC---c-eEEEEeccCce
Q 000992 76 DSITAFDYLME--KEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF---G-QILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd--~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d---~-tV~l~~~~~d~ 149 (1196)
..+.+|+|.|+ ...|.++...+.|+.+++.++.+..+.........++|+|||++.++-... . .+.........
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 45789999995 455655554489999999888776443334568999999999944443321 1 13222221111
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEe--ccCCCcee
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--ELKAFMGA 226 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~--e~~~~~v~ 226 (1196)
.....+.. -..-..+++.| +|.+++ +.. ..+.|+.++..+|...... .+...+..
T Consensus 219 ~~~~~~~~---------------~~~P~giavd~~~G~lyv-~d~------~~~~V~~~d~~~g~~~~~~~~~~~~~~~~ 276 (433)
T 4hw6_A 219 TERLSLCN---------------ARGAKTCAVHPQNGKIYY-TRY------HHAMISSYDPATGTLTEEEVMMDTKGSNF 276 (433)
T ss_dssp CCEEEEEE---------------CSSBCCCEECTTTCCEEE-CBT------TCSEEEEECTTTCCEEEEEEECSCCSSCE
T ss_pred eccccccc---------------cCCCCEEEEeCCCCeEEE-EEC------CCCEEEEEECCCCeEEEEEeccCCCCCcc
Confidence 00000000 01225688999 787666 332 3578999999668763222 12223345
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
.|+|+|+|+.|..+... .+.|..++.+
T Consensus 277 ~ia~dpdG~~LYvad~~-----~~~I~~~~~d 303 (433)
T 4hw6_A 277 HIVWHPTGDWAYIIYNG-----KHCIYRVDYN 303 (433)
T ss_dssp EEEECTTSSEEEEEETT-----TTEEEEEEBC
T ss_pred cEEEeCCCCEEEEEeCC-----CCEEEEEeCC
Confidence 79999999966555443 3578777755
No 273
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=97.31 E-value=0.0018 Score=75.48 Aligned_cols=143 Identities=10% Similarity=0.205 Sum_probs=112.9
Q ss_pred cccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHH-HHHHHHHHHHHhcccCHHHHHHHH
Q 000992 937 RYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKM-EQVLEAWADHLSDVKCFEDAATTY 1013 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~-~~i~~~~A~~L~~~~~~~eAa~~y 1013 (1196)
.|.|+ ...++.+....=.|+ ++.|++...+. ++|.+||-|. .+++.+ +.+...|=..-..+..| -+.+..
T Consensus 139 ~~~i~---~~~d~~I~~aLl~Gd--~e~AV~~cl~~-~r~adAllLA~~gg~el~~~~vq~~Y~~k~~~~~~~-~rll~~ 211 (399)
T 2pm7_A 139 DFSLS---GNIEQTISKNLVSGN--IKSAVKNSLEN-DLMMEAMVIALDSNNERLKESVKNAYFAKYGSKSSL-SRILYS 211 (399)
T ss_dssp CBCCC---SHHHHHHHHHHHTTC--HHHHHHHHHTT-TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTSCHH-HHHHHH
T ss_pred CCcCC---hhHHHHHHHHHHcCC--HHHHHHHHHHC-CChHHHHHHHHhcCHHHHHHHHHHHHHHhcccCchH-HHHHHH
Confidence 35552 345666666555677 89999999999 9999999998 888888 77776666555443344 445778
Q ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHH--HHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHH
Q 000992 1014 FCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD--EVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLID 1089 (1196)
Q Consensus 1014 ~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~--~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~ 1089 (1196)
...++++..+... ...+|++++.+.-.+. +++ +...++..|+++|...|+..+|--+|+= +|+++..+.+..+
T Consensus 212 iv~~n~~d~V~~~-~l~~WkE~La~i~t~a-~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~-Ag~~dk~v~iW~~ 286 (399)
T 2pm7_A 212 ISKREVDDLVENL-DVSQWKFISKAIQNLY-PNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLA-AGSLDKVASIWLS 286 (399)
T ss_dssp HHTTCCHHHHHHB-CGGGHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHccCHHHHHhcC-ChhhHHHHHHHHHhcC-CccHhHHHHHHHHHHHHHHhCCChhhhhHHHHh-hCCHHHHHHHHHH
Confidence 8889999877764 3557999998877665 567 8899999999999999999888888887 9999999999877
No 274
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.30 E-value=0.023 Score=62.19 Aligned_cols=31 Identities=13% Similarity=-0.014 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 986 PAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 986 ~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
+.....++...|..+...+++++|..+|.++
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 209 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344455556666666666666666555543
No 275
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.30 E-value=0.017 Score=66.16 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.4
Q ss_pred cccHHHHhhCHHHHHHHHHHc
Q 000992 937 RYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
++.+....|+|++|+.+|.++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~a 129 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKA 129 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 456666778888888887765
No 276
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.28 E-value=0.004 Score=71.34 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=105.0
Q ss_pred ccHHHHhhCHHHHHHHHHHc---CCCcH---HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCH
Q 000992 938 YTIDLRLQRFENALKHIVSM---GDSYH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCF 1006 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~---g~~~~---~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~ 1006 (1196)
..+...+|+|++|++.|.++ .++.. ...-..+... +.|++|++.| .+|. ....+..+|..+...+++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCH
Confidence 45556678999999888765 22211 1112233455 6677777776 2443 345667788899999999
Q ss_pred HHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1007 EDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1007 ~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
++|...|.++-. +.....+|...|++++|+....+. ..+++. .+....++..+...|++.+|...|.+.+
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888876521 122345677788888887655432 112211 2456778888889999999999887743
Q ss_pred C----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1078 G----D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1078 ~----d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
. + ...-..+|.+.+++++|+....+
T Consensus 299 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 2 23345678888899999877655
No 277
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.28 E-value=0.048 Score=61.65 Aligned_cols=220 Identities=10% Similarity=0.097 Sum_probs=124.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++++++ +.+|++.+.+.|+.- . ..++ .|+....+. -.| +.+..|.+.+++..++.+ .+|.|..
T Consensus 81 ~~~~i~~~~--~~~~~~g~~g~i~~S-~--DgG~-tW~~~~~~~------~~~-~~~~~i~~~~~~~~~~~~-~~g~v~~ 146 (327)
T 2xbg_A 81 RFNSVSFQG--NEGWIVGEPPIMLHT-T--DGGQ-SWSQIPLDP------KLP-GSPRLIKALGNGSAEMIT-NVGAIYR 146 (327)
T ss_dssp EEEEEEEET--TEEEEEEETTEEEEE-S--STTS-SCEECCCCT------TCS-SCEEEEEEEETTEEEEEE-TTCCEEE
T ss_pred cEEEEEecC--CeEEEEECCCeEEEE-C--CCCC-CceECcccc------CCC-CCeEEEEEECCCCEEEEe-CCccEEE
Confidence 567777875 667877777766652 2 2222 244321110 011 357788888888766654 5676533
Q ss_pred EECCCC-eEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe----ccCceeeeeecccccCccccccCccccCCCC
Q 000992 102 HSVDGN-ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT----HDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 102 w~~~~~-~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~----~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
..+++ ..+ ........+.+++++|+|.++|.+.. +.+..-+ ..|..+.. +....
T Consensus 147 -S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~gG~tW~~~~~------------------~~~~~ 206 (327)
T 2xbg_A 147 -TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWEPGQTAWEPHNR------------------TTSRR 206 (327)
T ss_dssp -ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-SSEEEEECTTCSSCEEEEC------------------CSSSC
T ss_pred -EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-CcEEEEeCCCCCceeECCC------------------CCCCc
Confidence 34433 344 22223567999999999998876644 4444321 23444311 11235
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-c---CCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-L---KAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~---~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
+..+.+.++|+.++ ++. ++.+++++.+.|+.-.... + ....+.+++|.|+++++|++.. ..
T Consensus 207 ~~~~~~~~~g~~~~-~~~-------~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~-------g~ 271 (327)
T 2xbg_A 207 LHNMGFTPDGRLWM-IVN-------GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA-------GA 271 (327)
T ss_dssp EEEEEECTTSCEEE-EET-------TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST-------TC
T ss_pred cceeEECCCCCEEE-EeC-------CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC-------Ce
Confidence 67899999999887 543 3677776542344322211 2 1123688999999999888754 23
Q ss_pred EEEEeCC-CeeEEEEEecc--CCCCcEEEEEEccCCCeeEEEEccC
Q 000992 252 IVFYERN-GLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 252 V~~~e~n-Gl~~~~f~l~~--~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
| ++..+ |..-. .+.. .....+..|.|.++++++|++ .++
T Consensus 272 i-~~S~DgG~tW~--~~~~~~~~~~~~~~v~~~~~~~~~~~G-~~G 313 (327)
T 2xbg_A 272 L-LCSQDGGQTWQ--QDVDVKKVPSNFYKILFFSPDQGFILG-QKG 313 (327)
T ss_dssp E-EEESSTTSSCE--ECGGGTTSSSCCCEEEEEETTEEEEEC-STT
T ss_pred E-EEeCCCCcccE--EcCccCCCCCCeEEEEEECCCceEEEc-CCc
Confidence 4 45444 32211 1221 112457889998777755554 555
No 278
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.27 E-value=0.0077 Score=73.07 Aligned_cols=163 Identities=11% Similarity=-0.044 Sum_probs=115.9
Q ss_pred cccHHHHhhCHHHHHHHHHHc---CC---CcHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccC
Q 000992 937 RYTIDLRLQRFENALKHIVSM---GD---SYHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKC 1005 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~---g~---~~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~ 1005 (1196)
...+....|+|++|++.|.++ ++ .-.......+.+. +.+++|++++ .+|. ...++...|..+...++
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES-GEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhcc
Confidence 345556788999999998875 22 1234455666788 8999999888 2332 34566678899999999
Q ss_pred HHHHHHHHHhCC--------CHHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000992 1006 FEDAATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1196)
Q Consensus 1006 ~~eAa~~y~~ag--------~~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1196)
+++|..+|.++- -+-....+|.+.|+|++|+.+..+. ...++. ......++..+...|++++|.++|.+.
T Consensus 389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-HLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC-SHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998752 1234457888899999999766542 112222 245667888889999999999998874
Q ss_pred c----CC---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1077 C----GD---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1077 l----~d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
+ .+ ....+.+|++.++|++|+.+..+
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3 23 34567788999999999876554
No 279
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.27 E-value=0.022 Score=63.25 Aligned_cols=182 Identities=13% Similarity=0.043 Sum_probs=102.6
Q ss_pred CcchhhHHHHHHhcCC-hh-----hhcccHHHHhhCHHHHHHHHHHcCCCcHHHH----HHHHHHHhcChHHHHhhc---
Q 000992 917 DPKEFLPYLQELESMP-PL-----LMRYTIDLRLQRFENALKHIVSMGDSYHADC----LNLMKKYAQLFPLGLKLI--- 983 (1196)
Q Consensus 917 DpkeYlpfL~~L~~l~-~~-----~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~a----le~~~~~~~ly~~AL~L~--- 983 (1196)
+..+=+.+++++.... ++ +-.+..-.-+|+|++|+..+....++ .-.+ .+++... +.+++|++.+
T Consensus 14 ~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~-~~~a~~~la~~~~~~-~~~~~A~~~l~~l 91 (291)
T 3mkr_A 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP-ELQAVRMFAEYLASH-SRRDAIVAELDRE 91 (291)
T ss_dssp CHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCH-HHHHHHHHHHHHHCS-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCCh-hHHHHHHHHHHHcCC-CcHHHHHHHHHHH
Confidence 3333355555555552 22 11234555577888888777554321 1222 2344555 6677777766
Q ss_pred --C--CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHH---HHHHHHHHcCCHHHHHHHHhhc-CCCHHH-HHHHHH
Q 000992 984 --T--DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLE---KAMKAYRASGNWSGVLTVAGLL-KLGKDE-VAKLAQ 1054 (1196)
Q Consensus 984 --~--d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~---kAl~~y~~~g~w~~al~la~~l-~~~~~~-~~~l~~ 1054 (1196)
. +|.. ..++...|.-+...|++++|...|.+.++.+ ....+|.+.|++++|....++. ..+++. ...++.
T Consensus 92 l~~~~~P~~-~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~ 170 (291)
T 3mkr_A 92 MSRSVDVTN-TTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLAT 170 (291)
T ss_dssp HHSCCCCSC-HHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HhcccCCCC-HHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHH
Confidence 1 2433 3556677788888888888888888744332 1226777778888877654432 111221 122333
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcC----CHH---HHHHHHHHhcCHHHHHHHHH
Q 000992 1055 ELCEELQALGKPGEAAKIALDYCG----DVT---NGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1055 ~la~~L~~~~~~~eAa~i~~~yl~----d~~---~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
.+...+...|++.+|..+|.+-+. ++. ....+|.+.++|++|.....
T Consensus 171 a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 171 AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344445556788888888776332 222 23346778888888876543
No 280
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.24 E-value=0.047 Score=61.95 Aligned_cols=90 Identities=17% Similarity=0.069 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH--------------HHHHHHHHHcCCHHHHHHHHhh-------cC
Q 000992 985 DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--------------EKAMKAYRASGNWSGVLTVAGL-------LK 1043 (1196)
Q Consensus 985 d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--------------~kAl~~y~~~g~w~~al~la~~-------l~ 1043 (1196)
++.....++...|..+...++|++|...|.++-.. .....+|...|++++|+....+ .+
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 44455566777777777777777777776655211 1122445555665555543332 22
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1044 LGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1044 ~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+..........+|..+...|++.+|...|.+
T Consensus 262 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 262 -DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 2222234555666666667777776666554
No 281
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.23 E-value=0.059 Score=61.88 Aligned_cols=188 Identities=15% Similarity=0.108 Sum_probs=105.9
Q ss_pred ceeEEeeecCCCEEEEEe-------------CCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEcc--
Q 000992 22 ILQFSALDIEQNRLFFAS-------------SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLM-- 85 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~sp-- 85 (1196)
.+.+++++++ ..+|++| .++.|+.+|+ ........ .|. +.+.++.+ ...+..|.+.+
T Consensus 51 G~EDi~~~~~-G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~--~~~~~~~~--~l~--~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 51 GSEDLEILPN-GLAFISSGLKYPGIMSFDPDKSGKILLMDL--NEKEPAVS--ELE--IIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp CCCEEEECTT-SEEEEEECCC-----------CCEEEEEET--TSSSCCEE--ECE--EECSSCCGGGCCEEEEEEEECT
T ss_pred CcceeEEcCC-CeEEEEeccccCCCcccCCCCCCeEEEEec--CCCCCceE--EEE--ccCCCCCcCceeeeeeEEEECC
Confidence 4778889885 5677776 5778999998 32221111 111 22210111 23788898877
Q ss_pred CCC-EEEEEEC---CCcEEEEE--CCCCeEEEeeeec----CcEEEEEECCCCCEEEEEeC---C--------------c
Q 000992 86 EKE-ALIVGTS---SGLLLLHS--VDGNATEVVGRVE----GGVRFISPSPDGDLLGVTTG---F--------------G 138 (1196)
Q Consensus 86 d~~-~La~as~---dG~I~lw~--~~~~~~e~vg~~~----~~I~~~awSPDg~~LA~~s~---d--------------~ 138 (1196)
|+. .|.++.. +++|.+|+ .+++....+...+ ...+.++..|||...++... | +
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g 203 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS 203 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCcc
Confidence 454 3444422 45666755 4455544443332 45889999999987776431 1 2
Q ss_pred eEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEE-
Q 000992 139 QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQA- 216 (1196)
Q Consensus 139 tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~- 216 (1196)
.|.-++. ..+. ..... + ..-..|+|||||+++- ++. +..++|.+|+.+ +|.+..
T Consensus 204 ~vyr~d~--~~~~-~~~~~------l---------~~pNGia~spDg~~lY-vad-----t~~~~I~~~~~~~~g~l~~~ 259 (355)
T 3sre_A 204 FVTYYSP--NDVR-VVAEG------F---------DFANGINISPDGKYVY-IAE-----LLAHKIHVYEKHANWTLTPL 259 (355)
T ss_dssp EEEEECT--TCCE-EEEEE------E---------SSEEEEEECTTSSEEE-EEE-----GGGTEEEEEEECTTSCEEEE
T ss_pred EEEEEEC--CeEE-EeecC------C---------cccCcceECCCCCEEE-EEe-----CCCCeEEEEEECCCCcEecC
Confidence 2322211 0000 00000 0 1237899999998776 443 235789998874 465432
Q ss_pred -EeccCCCceeEEEEcC-CCCeEEEEe
Q 000992 217 -SSELKAFMGAVLEWMP-SGANIAAVY 241 (1196)
Q Consensus 217 -~~e~~~~~v~slawsP-dG~~IAs~s 241 (1196)
.+ ...+....++..+ +|++.+++.
T Consensus 260 ~~~-~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 260 RVL-SFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp EEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred EEE-eCCCCCceEEEeCCCCcEEEEec
Confidence 23 2356668899999 599877664
No 282
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.20 E-value=0.016 Score=66.20 Aligned_cols=162 Identities=15% Similarity=0.057 Sum_probs=109.6
Q ss_pred ccHHHHhhCHHHHHHHHHHc---CCCcHHHH---HHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCH
Q 000992 938 YTIDLRLQRFENALKHIVSM---GDSYHADC---LNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCF 1006 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~---g~~~~~~a---le~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~ 1006 (1196)
..+....|++++|+.+|.++ .++..+.. -...... +.|++|++.+ .+|. ...++...|.-+...+++
T Consensus 176 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 253 (388)
T 1w3b_A 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA-RIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLI 253 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCH
Confidence 45566788999999988765 33222111 1233556 7788887776 2443 235667788999999999
Q ss_pred HHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1007 EDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1007 ~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
++|...|.++-. +.....+|...|++++|+....+. ...+.. ......++..+...|++.+|...|.+.+
T Consensus 254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-ADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999987621 223346778888888888655432 111222 2456778899999999999999998855
Q ss_pred CC-------HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1078 GD-------VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1078 ~d-------~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.. ...-..+|.+.+++++|+....+
T Consensus 333 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 23445678899999999876544
No 283
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0011 Score=70.55 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHH
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGE 1068 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~e 1068 (1196)
..++...|..+...+++++|...|.++-....-.+++...|++++|+....+. ..++.. ......+|..+...|++.+
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEK-AEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcch-HHHHHHHHHHHHHhcCHHH
Confidence 67888899999999999999999988755444456788888888888766542 223433 4577889999999999999
Q ss_pred HHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1069 AAKIALDYCG----D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1069 Aa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
|...|.+.+. + .-....+|.+.++|++|+....+
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999887432 2 23456778899999999876654
No 284
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.18 E-value=0.0027 Score=74.01 Aligned_cols=165 Identities=13% Similarity=-0.021 Sum_probs=110.7
Q ss_pred hcccHHHHhhCHHHHHHHHHHcC---CCcH---HHH---------------HHHHHHHhcChHHHHhhc-----CCcHHH
Q 000992 936 MRYTIDLRLQRFENALKHIVSMG---DSYH---ADC---------------LNLMKKYAQLFPLGLKLI-----TDPAKM 989 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~g---~~~~---~~a---------------le~~~~~~~ly~~AL~L~-----~d~~~~ 989 (1196)
..+.+...+|+|++|++.|.++- ++.. +.. -..+.+. +.|++|++++ .+|. .
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~-~ 176 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAIAFLDKILEVCVW-D 176 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-C
Confidence 34566677899999999988762 2211 111 1124567 8899999888 2333 3
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc---CCCHHHHHHHH-----
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLA----- 1053 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l---~~~~~~~~~l~----- 1053 (1196)
..++...|..+...+++++|...|.++-. +-....+|...|++++|+....+. ..+.......+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 45677889999999999999999988632 223446788889998888665432 11111111111
Q ss_pred ----HHHHHHHHHcCChHHHHHHHHHhc----CCH-------HHHHHHHHHhcCHHHHHHHHHh
Q 000992 1054 ----QELCEELQALGKPGEAAKIALDYC----GDV-------TNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1054 ----~~la~~L~~~~~~~eAa~i~~~yl----~d~-------~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
..++..+...|++.+|..+|.+.+ ++. .....+|.+.+++++|+....+
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334888889999999999988743 222 2336788899999999987654
No 285
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.16 E-value=0.005 Score=68.83 Aligned_cols=86 Identities=17% Similarity=0.058 Sum_probs=50.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC------CH--
Q 000992 1009 AATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG------DV-- 1080 (1196)
Q Consensus 1009 Aa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~------d~-- 1080 (1196)
.+.+|.. |++++|+++|. +|+.+....+ +..........+|..+...|+|.+|...|.+-+. +.
T Consensus 122 lg~~~~~-g~~~~A~~~~~------~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQ------QAAAVFENEE-RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHH------HHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHc-CCHHHHHHHHH------HHHHHHHhCC-ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 3444444 55555555553 3344443332 2223345677888888899999999888877432 11
Q ss_pred -----HHHHHHHHHhcCHHHHHHHHHh
Q 000992 1081 -----TNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1081 -----~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
-....+|...+++++|+....+
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1122455556888888776554
No 286
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.07 E-value=0.03 Score=64.10 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=91.4
Q ss_pred cCCcchhhHHHHHHhcCChh----------hhcccHHHHhhCHHHHHHHHHHcCC------CcHHHHHH------HHHHH
Q 000992 915 QRDPKEFLPYLQELESMPPL----------LMRYTIDLRLQRFENALKHIVSMGD------SYHADCLN------LMKKY 972 (1196)
Q Consensus 915 q~DpkeYlpfL~~L~~l~~~----------~~r~~Id~~L~ry~~Al~~l~~~g~------~~~~~ale------~~~~~ 972 (1196)
.++|.+|-..|+.++..+.. +.++......|+|++|+.+|.++-. +....|.- .+...
T Consensus 75 ~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~ 154 (378)
T 3q15_A 75 YGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM 154 (378)
T ss_dssp -----CHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc
Confidence 35677777788888765221 2234556678999999999887621 11222211 11233
Q ss_pred hcCh-------HHHHhhc-C--C-cHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHH--------------HHHHHH
Q 000992 973 AQLF-------PLGLKLI-T--D-PAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEK--------------AMKAYR 1027 (1196)
Q Consensus 973 ~~ly-------~~AL~L~-~--d-~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~k--------------Al~~y~ 1027 (1196)
+.| .+|++++ . + +.....++..+|.-+...++|++|...|.+|-+..+ .-.+|.
T Consensus 155 -~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 155 -KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD 233 (378)
T ss_dssp -TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 444 4445555 2 2 335566777888888888998888888876633211 124555
Q ss_pred HcCCHHHHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1028 ASGNWSGVLTVAGL-------LKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1028 ~~g~w~~al~la~~-------l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..|++++|+....+ .+ ++.. ......+|..+...|++.+|...+.+
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~-~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKV-PDLL-PKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHC-GGGH-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhhC-ChhH-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66676666543332 12 2223 44566777778888888888777665
No 287
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.07 E-value=0.0029 Score=70.26 Aligned_cols=88 Identities=14% Similarity=-0.026 Sum_probs=50.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHhc------CC
Q 000992 1007 EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQAL-GKPGEAAKIALDYC------GD 1079 (1196)
Q Consensus 1007 ~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~-~~~~eAa~i~~~yl------~d 1079 (1196)
..++.+|...|++++|+++|. +|+.+....+ +..........+|..+... |+|.+|...|.+-+ ++
T Consensus 81 ~~lg~~~~~~g~~~~A~~~~~------~Al~l~~~~g-~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 81 VEAYKCFKSGGNSVNAVDSLE------NAIQIFTHRG-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH------HHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHH------HHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 344555555555555555542 3333333333 2222334556777777775 88888887776633 22
Q ss_pred HH-------HHHHHHHHhcCHHHHHHHHH
Q 000992 1080 VT-------NGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1080 ~~-------~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
.. ....+|++.++|++|+....
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 182 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYS 182 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 21 23566778888888876544
No 288
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.06 E-value=0.0012 Score=77.67 Aligned_cols=126 Identities=13% Similarity=0.024 Sum_probs=84.9
Q ss_pred hhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH---
Q 000992 944 LQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--- 1019 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--- 1019 (1196)
+|+++++.+.+..-+...+...-+..-+. ++|+.|..+| .- .-+...|+=|...++|++|...|.++++.
T Consensus 107 lg~l~e~e~f~~~pn~~a~~~IGd~~~~~-g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~W 180 (449)
T 1b89_A 107 TNRLAELEEFINGPNNAHIQQVGDRCYDE-KMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKANSTRTW 180 (449)
T ss_dssp --CHHHHTTTTTCC-----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHH
T ss_pred hCCHHHHHHHHcCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHcCCchhH
Confidence 57777766666543222344555566777 8999999998 32 25667788899999999999999999998
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC
Q 000992 1020 EKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD 1079 (1196)
Q Consensus 1020 ~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d 1079 (1196)
..++.+++..|+|+.|..+...+...++++ .++++.+.+.|++.||..++..-++.
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~L~~~ad~l----~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLHIVVHADEL----EELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTTTTTCHHHH----HHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhCHhhH----HHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 788899999999999988777665555543 35777888889999998887775543
No 289
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.04 E-value=0.013 Score=62.82 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
......+|..+...|++.+|...|.+
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566777777777777777777665
No 290
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.04 E-value=0.024 Score=63.02 Aligned_cols=23 Identities=9% Similarity=-0.003 Sum_probs=10.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 000992 1053 AQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1053 ~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
...+|..+...|++.+|...|.+
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444555554444433
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.00 E-value=0.21 Score=59.84 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=69.2
Q ss_pred ceeEEeeec-CCCEEEEEeCC-CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEE-------ccCCCEEEE
Q 000992 22 ILQFSALDI-EQNRLFFASSA-NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDY-------LMEKEALIV 92 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~-~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~-------spd~~~La~ 92 (1196)
....+++|| +.+.||++... +.|..+|+ ..+... .+.+ .+ .. ....+..|+| +++|+.|.+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~--~~~~v~-~l~~--~~--~~---~~~~p~~ia~~~~~~~~d~~G~~lyv 209 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDL--KNRMLS-SPLN--IN--TI---PTNRIRSIAFNKKIEGYADEAEYMIV 209 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEET--TTTEEE-EEEC--CT--TS---SCSBEEEEEECCCBTTTBCTTCEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEEC--CCCEEE-EEEc--cC--cc---ccCCCcEEEEeecccccCCCCCEEEE
Confidence 467899999 58889998664 56888887 444432 1111 00 00 1246999999 999997777
Q ss_pred EECCC-c------EEEEECCC-CeE------EEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEec
Q 000992 93 GTSSG-L------LLLHSVDG-NAT------EVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 93 as~dG-~------I~lw~~~~-~~~------e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~ 145 (1196)
+...+ . |.+.+... +.+ ..+... ..-..++.+|+ |.+.++-..++.|..++.
T Consensus 210 ad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 210 AIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp EECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred EeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 76554 2 66666544 221 222222 23456788995 455555557777877654
No 292
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.00 E-value=1.4 Score=55.56 Aligned_cols=386 Identities=9% Similarity=0.002 Sum_probs=195.2
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.+++.|.+ .+.|++++..++|+.++. .++... .+. . ...+-++...|.++...++|... +++.++-+.
T Consensus 116 ~i~~i~~d~~~~g~lwi~t~~~gl~~~~~--~~~~~~-~~~---~--~~~~~l~~~~i~~i~~d~~g~lw-igt~~~Gl~ 186 (781)
T 3v9f_A 116 DVTHITSSVQAGKGLWVCTYYRGIEYLDI--ATGKFT-HYN---K--STVPALPSEQTWTATEAEDGKLY-IGHVEGGLS 186 (781)
T ss_dssp CEEEEEECSSTTSEEEEEESSSCEEEEET--TTTEEE-EES---T--TTCTTCSCCCEEEEEEEETTEEE-EEETTTEEE
T ss_pred cceEEEecCccCCCEEEEECCCCeeEEEC--CCCeEE-eec---c--CcccCCCccceEEEEECCCCCEE-EEecCCCeE
Confidence 4667777762 456888886566999987 333321 110 0 00011234578888887777654 567665588
Q ss_pred EEECCCCeEEEeee--------ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 101 LHSVDGNATEVVGR--------VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 101 lw~~~~~~~e~vg~--------~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
.|+..++++....+ ....|.++...++|.+.+ ++.+| |.+++..-............ ... -.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~G-l~~~d~~~~~~~~~~~~~~~-~~~-------l~ 256 (781)
T 3v9f_A 187 ILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSKG-LALFNANTETFTNFHNNPGN-IHG-------AL 256 (781)
T ss_dssp EEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEC-------------------C
T ss_pred EEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCCc-HheECCCCCcEEEEEcCCCc-ccc-------cc
Confidence 89998876653321 135699999999988765 45554 66665322211111110000 000 11
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec--------------cCCCceeEEEEcCCCCeEE
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE--------------LKAFMGAVLEWMPSGANIA 238 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e--------------~~~~~v~slawsPdG~~IA 238 (1196)
...|.+|.-.++|.+.+ ++. .+-|.++|..++....... -....+.++..-++|++-+
T Consensus 257 ~~~i~~i~~d~~g~lWi--gt~------~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWi 328 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI--ATE------LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWI 328 (781)
T ss_dssp CCCEEEEEECTTSEEEE--EES------SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEE
T ss_pred CceEEEEEECCCCCEEE--EeC------CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEE
Confidence 34678999999998776 431 1346778886665433221 1234578898999998665
Q ss_pred EEecCCCCCCCCeEEEEeCCCeeEEEEEe------c-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE--
Q 000992 239 AVYDRKSENKCPSIVFYERNGLERSSFDI------N-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW-- 309 (1196)
Q Consensus 239 s~s~d~~~~~~~~V~~~e~nGl~~~~f~l------~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w-- 309 (1196)
++.. ..|..++.+...-..+.. . .-....|.+++-.++|.+.+.....+ |..|+..+..+
T Consensus 329 gt~~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~G----l~~~~~~~~~~~~ 397 (781)
T 3v9f_A 329 GTWG-------GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGG----INVFENGKRVAIY 397 (781)
T ss_dssp EEBS-------SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSC----EEEEETTEEEEEC
T ss_pred EecC-------CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCc----EEEEECCCCeEEE
Confidence 4422 247777765322222211 0 00134699999999998765443444 88888764322
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEE-----------------EEeeecCCCeeEEEEcCCEEEEe
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF-----------------IWTTAVMENSTALVIDGSKILVT 372 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~-----------------~~~~~~~d~~~v~viDg~~l~lt 372 (1196)
|. ..-........++.-++++. |.+++.++.+..++. ++.+..+..+.+-+.....|...
T Consensus 398 ~~-~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~ 474 (781)
T 3v9f_A 398 NK-ENRELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVI 474 (781)
T ss_dssp C------CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEE
T ss_pred cc-CCCCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEE
Confidence 11 00001111225555565553 566664333433211 11111111121111111223322
Q ss_pred eccccCCCCCceeeee-----cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccC
Q 000992 373 PLSLSLMPPPMYLFSL-----KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAF 447 (1196)
Q Consensus 373 ~l~~~~vpppm~~~~l-----~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~ 447 (1196)
....... ..... .....|.++...++| .|-+++.++-|..|+..+.... .+. .......
T Consensus 475 ~~~~~~~----~~~~~~~~~~~~~~~i~~i~~d~~g---~lWigt~~~Gl~~~~~~~~~~~-~~~--------~~~~l~~ 538 (781)
T 3v9f_A 475 DLASKKV----IHHYDTSNSQLLENFVRSIAQDSEG---RFWIGTFGGGVGIYTPDMQLVR-KFN--------QYEGFCS 538 (781)
T ss_dssp ESSSSSC----CEEECTTTSSCSCSCEEEEEECTTC---CEEEEESSSCEEEECTTCCEEE-EEC--------TTTTCSC
T ss_pred eCCCCeE----EecccCcccccccceeEEEEEcCCC---CEEEEEcCCCEEEEeCCCCeEE-Ecc--------CCCCCCC
Confidence 2221111 00000 013568999988888 4566666555777776542111 010 0001123
Q ss_pred CcEEEEEEecCCeEEEE
Q 000992 448 GSVIHLIWLGSHLLLSV 464 (1196)
Q Consensus 448 ~~v~~l~~~~d~~lla~ 464 (1196)
+.|..+...++|.+.+.
T Consensus 539 ~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 539 NTINQIYRSSKGQMWLA 555 (781)
T ss_dssp SCEEEEEECTTSCEEEE
T ss_pred CeeEEEEECCCCCEEEE
Confidence 47888888888876553
No 293
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.99 E-value=0.18 Score=57.55 Aligned_cols=21 Identities=0% Similarity=-0.210 Sum_probs=13.8
Q ss_pred cccHHHHhhCHHHHHHHHHHc
Q 000992 937 RYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
.+.+...+|+|++|+.++.++
T Consensus 149 lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 149 MSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 345666677777777776554
No 294
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.98 E-value=0.017 Score=64.23 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=42.4
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcCCCcHHH---HHHHHHHHhcChHHHHhhc-----CCcHH-HHHHHHHHHHHHhcccC
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMGDSYHAD---CLNLMKKYAQLFPLGLKLI-----TDPAK-MEQVLEAWADHLSDVKC 1005 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~---ale~~~~~~~ly~~AL~L~-----~d~~~-~~~i~~~~A~~L~~~~~ 1005 (1196)
...+.+....|++++|++.|.+. ...+. ...++.+. +.+++|++.+ .+|.. ...+...|...+...++
T Consensus 105 ~~la~~~~~~g~~~~Al~~l~~~--~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 105 LMAASIYFYDQNPDAALRTLHQG--DSLECMAMTVQILLKL-DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTC--CSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHCCCHHHHHHHHhCC--CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH
Confidence 34456666777777777777762 21221 12334556 6677776665 23332 22333445555555556
Q ss_pred HHHHHHHHHhC
Q 000992 1006 FEDAATTYFCC 1016 (1196)
Q Consensus 1006 ~~eAa~~y~~a 1016 (1196)
+++|..+|.++
T Consensus 182 ~~eA~~~~~~~ 192 (291)
T 3mkr_A 182 LQDAYYIFQEM 192 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.96 E-value=0.22 Score=56.84 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=80.9
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeee------cCcEEEEEECCC----CCEEEEEeCC-----ceE
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRV------EGGVRFISPSPD----GDLLGVTTGF-----GQI 140 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~------~~~I~~~awSPD----g~~LA~~s~d-----~tV 140 (1196)
..+.+|+|.|||+.+ ++..+|.|.+++ ++ ..+.+... ..+...++|+|| |.+.++-+.. +.|
T Consensus 31 ~~P~~ia~~pdG~l~-V~e~~g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGML-IAERPGRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEE-EEETTTEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEE-EEeCCCeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 368999999999854 556779999998 43 43322211 357899999999 4444444432 456
Q ss_pred EEEeccCceeee-ee-cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccc-c---c--cCCCCEEEEEECCCC
Q 000992 141 LVMTHDWDLLYE-NP-LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFC-N---S--SKLHKRLKVWERDSG 212 (1196)
Q Consensus 141 ~l~~~~~d~~~~-~~-l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d-~---~--~~~d~~irVWd~~~G 212 (1196)
..++.+.+.+.. .. +.... ..... .|. -..|+|.|||.++++.+... . . ....++|.-++. +|
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p----~~~~~--~h~--~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~-dG 178 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIP----ARPHG--LHS--GGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTP-EG 178 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEEC----CCTTC--CCC--CCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECT-TS
T ss_pred EEEEeCCCCcCceEEEEEeCC----CCCCC--CcC--CceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcC-CC
Confidence 555433221111 00 00000 00000 122 25799999998777433210 0 0 012246666677 55
Q ss_pred cEE--------------EEeccCCCceeEEEEcC-CCCeEEEE
Q 000992 213 TLQ--------------ASSELKAFMGAVLEWMP-SGANIAAV 240 (1196)
Q Consensus 213 ~l~--------------~~~e~~~~~v~slawsP-dG~~IAs~ 240 (1196)
... -...++.. ...++|.| +|++.++-
T Consensus 179 ~~p~~npf~~~~~~~~~i~a~G~rn-p~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 179 EPAPGNPFLGRRGARPEVYSLGHRN-PQGLAWHPKTGELFSSE 220 (352)
T ss_dssp SBCTTCTTTTCTTSCTTEEEECCSE-ECCCEECTTTCCEEEEE
T ss_pred CCCCCCcccCCCCCCccEEEEcCCC-cccEEEECCCCCEEEEE
Confidence 210 01112222 36789999 77776654
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.95 E-value=0.35 Score=55.29 Aligned_cols=237 Identities=15% Similarity=0.106 Sum_probs=119.5
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeee------cCcEEEEEECCC----CCEEEEEeC---C----c
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRV------EGGVRFISPSPD----GDLLGVTTG---F----G 138 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~------~~~I~~~awSPD----g~~LA~~s~---d----~ 138 (1196)
..+.+|+|.|||+. .++..+|.|.+++.++ . +.+... ..+...++|+|| |.+.++-+. + +
T Consensus 29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~~G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLGGGRY-LVTERPGRLVLISPSG-K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEETTEE-EEEETTTEEEEECSSC-E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcCCCeE-EEEeCCCEEEEEeCCC-c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 46899999999984 4556679999998554 4 433211 357899999998 555554442 2 4
Q ss_pred eEEEEeccCc--eee-eeec-ccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc----c--cCCCCEEEEEE
Q 000992 139 QILVMTHDWD--LLY-ENPL-EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN----S--SKLHKRLKVWE 208 (1196)
Q Consensus 139 tV~l~~~~~d--~~~-~~~l-~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~----~--~~~d~~irVWd 208 (1196)
.|..++.+.. .+. ...+ .... ... .| .-..|+|.|||.++++.+.... . ....++|.-.+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~------~~~--~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~ 175 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIP------GAY--IH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVD 175 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEE------CCS--SC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEEC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCC------CCC--Cc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEc
Confidence 4554443221 010 0000 0000 000 12 1257999999997774432100 0 01234566667
Q ss_pred CCCCcE---------EEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEE---------------
Q 000992 209 RDSGTL---------QASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERS--------------- 263 (1196)
Q Consensus 209 ~~~G~l---------~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~--------------- 263 (1196)
. +|.. .-...++... ..++|.| +|++.++-.... ....|.+.+..+. .+
T Consensus 176 ~-dG~~p~~npf~~~~i~a~G~rnp-~Gla~d~~~g~l~v~d~g~~---~~dei~~i~~G~n-yGwp~~~g~~~~~~~~~ 249 (354)
T 3a9g_A 176 E-EGRPPADNPFPNSPIWSYGHRNP-QGIDWHRASGVMVATEHGPV---GHDEVNIILKGGN-YGWPLATGKAGRGEFVD 249 (354)
T ss_dssp T-TSCCCTTSSSTTCCEEEECCSCC-CEEEECTTTCCEEEEECCSS---SCCEEEEECTTCB-CCTTTCCSCCCCTTSCC
T ss_pred C-CCCCCCCCCCCCCcEEEEccCCc-ceEEEeCCCCCEEEEecCCC---CCcEEEEecCCCc-CCCCcccCCCCCCCCcC
Confidence 7 5641 1111233332 6899999 788776643211 1123444443211 00
Q ss_pred -EEEeccCCCCcEEEEEE-------ccCCCeeEEEEccCCcceEEEEEecCC-EEEEEEEEEEecC--C-cEEEEEccCC
Q 000992 264 -SFDINEQIDSTVELLKW-------NCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEIRYLRR--D-GIRFMWHPTK 331 (1196)
Q Consensus 264 -~f~l~~~~~~~V~~laW-------SpDg~~LAs~~~d~~~~~V~lW~~~n~-~wylkq~l~~~~~--~-~~~v~Wsp~~ 331 (1196)
.+.+. +.......++| ..+|.+++.....+ .|...+.... .. ...+ .+... . ...+.++||+
T Consensus 250 p~~~~~-~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~---~v~~~~~~~~g~~-~~~~-~~~~~~~~rp~~v~~~pDG 323 (354)
T 3a9g_A 250 PVIDTG-SETWAPSGASFVHGDMFPGLRGWLLIACLRGS---MLAAVNFGDNMEV-RKIS-TFFKNVFGRLRDVVIDDDG 323 (354)
T ss_dssp CSEECT-TCCCCEEEEEECCSSSCGGGTTEEEEEETTTT---EEEEEEECGGGCE-EEEE-EECTTTSCCEEEEEECTTS
T ss_pred CEeecC-CCCcCCcceEEECCCCCcccCCcEEEEEcCCC---EEEEEEECCCCcc-ccee-eeccCCCCCeeEEEECCCC
Confidence 01110 11234677888 36776666544433 5666665532 21 1111 22211 2 2778888887
Q ss_pred CceEEEEe
Q 000992 332 PLQLICWT 339 (1196)
Q Consensus 332 ~~~L~~~~ 339 (1196)
. |.+.+
T Consensus 324 ~--lyv~~ 329 (354)
T 3a9g_A 324 G--ILIST 329 (354)
T ss_dssp C--EEEEE
T ss_pred c--EEEEE
Confidence 4 45554
No 297
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.94 E-value=0.011 Score=65.13 Aligned_cols=161 Identities=12% Similarity=0.010 Sum_probs=109.3
Q ss_pred ccHHHHhhCHHHHHHHHHHc---CCCc----HHHHHHHHHHHhc-ChHHHHhhc-----CCcHHHHHHHHHHHHHHhccc
Q 000992 938 YTIDLRLQRFENALKHIVSM---GDSY----HADCLNLMKKYAQ-LFPLGLKLI-----TDPAKMEQVLEAWADHLSDVK 1004 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~---g~~~----~~~ale~~~~~~~-ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~ 1004 (1196)
..+...+|++++|+..+.++ .++. ...+.- .... + .|++|++.+ .+|. ....+..+|..+...+
T Consensus 63 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 139 (330)
T 3hym_B 63 IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY-YLMV-GHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVES 139 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH-HHHS-CSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH-HHHh-hhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcc
Confidence 35556788999999887765 2221 223322 2344 5 788888877 2333 3456778899999999
Q ss_pred CHHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1005 CFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1005 ~~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
++++|...|.++-.. -....+|...|++++|+....+. ...+.. ......+|..+...|++.+|...+.+
T Consensus 140 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-PFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999998876322 23446788888998888766542 223322 35677889999999999999999877
Q ss_pred hcCC----------------HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1076 YCGD----------------VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1076 yl~d----------------~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+.. .-....+|.+.++|++|+....+
T Consensus 219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4321 13456678888999999876543
No 298
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.93 E-value=0.61 Score=52.21 Aligned_cols=163 Identities=13% Similarity=-0.012 Sum_probs=97.7
Q ss_pred CCEEEEEEccCCCEEEEE-ECCCcEEEEECCC----CeEE-EeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCc
Q 000992 76 DSITAFDYLMEKEALIVG-TSSGLLLLHSVDG----NATE-VVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a-s~dG~I~lw~~~~----~~~e-~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d 148 (1196)
..+.+++|.++++.|..+ ..++.|..++.++ ...+ ++...-.....+++++.+..|-.+ +..+.|.+.+.+..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 578999999987666655 4568899999886 2223 222111345788898866655444 56778877665443
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeE
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAV 227 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~s 227 (1196)
..... +... -..-..|+..|++.++- ++... ....|...+. +|......- ..-.....
T Consensus 110 ~~~~~-~~~~--------------~~~P~~iavdp~~g~ly-~~d~~----~~~~I~~~~~-dG~~~~~~~~~~~~~P~g 168 (316)
T 1ijq_A 110 KRKTL-FREN--------------GSKPRAIVVDPVHGFMY-WTDWG----TPAKIKKGGL-NGVDIYSLVTENIQWPNG 168 (316)
T ss_dssp SEEEE-EECT--------------TCCEEEEEEETTTTEEE-EEECS----SSCEEEEEET-TSCCEEEEECSSCSCEEE
T ss_pred ceEEE-EECC--------------CCCcceEEeCCCCCEEE-EEccC----CCCeEEEEcC-CCCCeEEEEECCCCCceE
Confidence 22111 1100 12346899998655443 23211 1268888888 776655432 22244589
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEE
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~ 264 (1196)
|+|+|++..|-.+... ...|..++.+|.....
T Consensus 169 la~d~~~~~lY~~D~~-----~~~I~~~d~dg~~~~~ 200 (316)
T 1ijq_A 169 ITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKT 200 (316)
T ss_dssp EEEETTTTEEEEEETT-----TTEEEEEETTSCSCEE
T ss_pred EEEeccCCEEEEEECC-----CCeEEEEecCCCceEE
Confidence 9999998888776543 3578889988754443
No 299
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.90 E-value=0.027 Score=61.37 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
......+|..+...|++.+|...|.+
T Consensus 195 ~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 195 AKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566677777777788777777666
No 300
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.89 E-value=0.0044 Score=65.98 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla 1100 (1196)
.....+|..+...|++.+|...+.+.+. + ......+|.+.+++++|.+..
T Consensus 176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3455667777777777777777766432 1 123344555666666665543
No 301
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.87 E-value=0.041 Score=60.45 Aligned_cols=52 Identities=15% Similarity=-0.012 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.....+|..+...|++.+|...|.+.+. + ......+|.+.+++++|+....+
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4566777777888888888887776431 1 23445677778888888776654
No 302
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.87 E-value=0.28 Score=56.73 Aligned_cols=162 Identities=15% Similarity=0.046 Sum_probs=98.6
Q ss_pred CCEEEEEEccCCCEEEEE-ECCCcEEEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCceeee
Q 000992 76 DSITAFDYLMEKEALIVG-TSSGLLLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a-s~dG~I~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d~~~~ 152 (1196)
..+.+++|.+.++.|..+ ...+.|..++.+++..+.+.. --.....++++|.+..|-.+ +..+.|.+.+.+......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 468999999876666554 467889999999876553321 11234667888866665544 455667665443322111
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slaws 231 (1196)
.. .. .-..-..|+..|++.++- ++... ....|...+. +|...... ...-..-..|+|+
T Consensus 196 l~-~~--------------~l~~P~giavdp~~g~ly-~td~~----~~~~I~r~~~-dG~~~~~~~~~~~~~PnGlavd 254 (386)
T 3v65_B 196 LL-WQ--------------SLEKPRAIALHPMEGTIY-WTDWG----NTPRIEASSM-DGSGRRIIADTHLFWPNGLTID 254 (386)
T ss_dssp EE-CS--------------SCSCEEEEEEETTTTEEE-EEECS----SSCEEEEEET-TSCSCEEEECSSCSCEEEEEEE
T ss_pred ee-cC--------------CCCCCcEEEEEcCCCeEE-EeccC----CCCEEEEEeC-CCCCcEEEEECCCCCeeeEEEe
Confidence 11 00 012346889998766554 33211 2268888898 66544433 2222345899999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1196)
|++..|-.+... ...|..++.+|....
T Consensus 255 ~~~~~lY~aD~~-----~~~I~~~d~dG~~~~ 281 (386)
T 3v65_B 255 YAGRRMYWVDAK-----HHVIERANLDGSHRK 281 (386)
T ss_dssp GGGTEEEEEETT-----TTEEEEECTTSCSCE
T ss_pred CCCCEEEEEECC-----CCEEEEEeCCCCeeE
Confidence 988887776543 357888888875443
No 303
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.87 E-value=0.0031 Score=70.58 Aligned_cols=60 Identities=8% Similarity=-0.061 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.++.+|...|++++|+++|. +|+.+....+ +..........+|..+.. |+|.+|...|.+
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~------~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIE------KASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHH------HHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH------HHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 34444444455555554442 2233333322 222223344455555555 666665555544
No 304
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.83 E-value=0.0051 Score=67.75 Aligned_cols=84 Identities=10% Similarity=0.022 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQ 1061 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~ 1061 (1196)
.++..+|..+...+++++|...|.++-. +.....+|...|+|++|+....+. ...++. ......+|..+.
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~ 251 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY-VRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 4455556666666666666666655411 122234455555555555433321 001111 123445555555
Q ss_pred HcCChHHHHHHHHH
Q 000992 1062 ALGKPGEAAKIALD 1075 (1196)
Q Consensus 1062 ~~~~~~eAa~i~~~ 1075 (1196)
..|++.+|...|.+
T Consensus 252 ~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 252 NMSQYDLAAKQLVR 265 (327)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 66666666655544
No 305
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.82 E-value=0.0096 Score=63.89 Aligned_cols=25 Identities=8% Similarity=-0.280 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
++..+|..+...+++++|...|.++
T Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 113 AHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3334444444444444444444443
No 306
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.79 E-value=0.61 Score=53.08 Aligned_cols=197 Identities=16% Similarity=0.075 Sum_probs=115.4
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcEEEE
Q 000992 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLLLLH 102 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I~lw 102 (1196)
.+.+.++ ...|+++.. +.|..+++ ...... .+ +. ....+.+++|.+..+.|..+ ...+.|..+
T Consensus 37 ~C~~~~~-~~~ll~~~~-~~I~~i~~--~g~~~~-~~------~~-----~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~ 100 (349)
T 3v64_C 37 SCKALGP-EPVLLFANR-IDIRQVLP--HRSEYT-LL------LN-----NLENAIALDFHHRRELVFWSDVTLDRILRA 100 (349)
T ss_dssp CEEESSS-CCEEEEECB-SCEEEECT--TSCCEE-EE------EC-----SCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccccccc-CceeEeecc-cceEEEeC--CCCeeE-Ee------ec-----CCCceEEEEEeccccEEEEEeccCCceEEE
Confidence 3444455 334444443 44888887 332221 01 11 12468999999877766655 467889999
Q ss_pred ECCCCeEEEeee-ecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 103 SVDGNATEVVGR-VEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 103 ~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
+.+++..+.+.. --.....+++.|.+..|-.+ +..+.|.+.+.+....... +... -..-..|+
T Consensus 101 ~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-~~~~--------------l~~P~~ia 165 (349)
T 3v64_C 101 NLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-LWQS--------------LEKPRAIA 165 (349)
T ss_dssp ETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-ECTT--------------CSCEEEEE
T ss_pred ecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE-EeCC--------------CCCcceEE
Confidence 998865543221 11345678898866655444 4566777766554322111 1100 02336899
Q ss_pred EccCCceEEEeeccccccCCC-CEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 181 WRGDGKYFATLSEFCNSSKLH-KRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d-~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
+.|++.++- .+.. +. ..|...+. +|......- ..-..-..|+|+|++..|-.+... ...|..++.+
T Consensus 166 vdp~~g~ly-~td~-----~~~~~I~r~~~-dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~-----~~~I~~~~~d 233 (349)
T 3v64_C 166 LHPMEGTIY-WTDW-----GNTPRIEASSM-DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK-----HHVIERANLD 233 (349)
T ss_dssp EETTTTEEE-EEEC-----SSSCEEEEEET-TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETT
T ss_pred EecCcCeEE-Eecc-----CCCCEEEEEeC-CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC-----CCEEEEEeCC
Confidence 998655444 3321 23 78888898 776544432 122345899999988887776543 3578888888
Q ss_pred CeeEE
Q 000992 259 GLERS 263 (1196)
Q Consensus 259 Gl~~~ 263 (1196)
|....
T Consensus 234 G~~~~ 238 (349)
T 3v64_C 234 GSHRK 238 (349)
T ss_dssp SCSCE
T ss_pred CCceE
Confidence 75433
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.78 E-value=0.3 Score=55.89 Aligned_cols=103 Identities=12% Similarity=0.060 Sum_probs=61.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC---CCEEEEEEC---
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME---KEALIVGTS--- 95 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd---~~~La~as~--- 95 (1196)
.+.+++|++++. ||++...+.|+.++. ..+ . .+.+++ +. ......+.+|+++|| +..|.++..
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d~--~G~-~--~~~~~~--v~---~~g~~g~~gia~~pdf~~~g~lyv~~~~~~ 98 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLISP--SGK-K--LVASFD--VA---NVGEAGLLGLALHPEFPKKSWVYLYASYFA 98 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEECS--SCE-E--EEEECC--CC---CSTTCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEeC--CCc-e--Eeeccc--ee---ecCCCceeeEEeCCCCCcCCEEEEEEeccC
Confidence 577899999876 888877788988875 222 1 122222 00 001257999999998 555555443
Q ss_pred -C----CcEEEEECCCC--e---EE-Eeeeec----CcEEEEEECCCCCEEEEEe
Q 000992 96 -S----GLLLLHSVDGN--A---TE-VVGRVE----GGVRFISPSPDGDLLGVTT 135 (1196)
Q Consensus 96 -d----G~I~lw~~~~~--~---~e-~vg~~~----~~I~~~awSPDg~~LA~~s 135 (1196)
+ +.|..|+.+++ . .+ ++.... ..-..++|+|||.+.++.+
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 99 EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred CCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 2 56777877654 1 11 111111 1235789999998766543
No 308
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.78 E-value=0.48 Score=51.70 Aligned_cols=197 Identities=8% Similarity=-0.021 Sum_probs=115.4
Q ss_pred CCEEEEEEccCCCEEE-EEECCCcEEEEECCCCeEEEe--eeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce---
Q 000992 76 DSITAFDYLMEKEALI-VGTSSGLLLLHSVDGNATEVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL--- 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La-~as~dG~I~lw~~~~~~~e~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~--- 149 (1196)
+.+.+++|.|++..|. +...++.|...|.++..+..+ +. ..-...+++.++|.++++.-.++.+.+....-+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 5699999999887665 466778888899985444332 32 1457888999998755544456666655322111
Q ss_pred -eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEec-------c
Q 000992 150 -LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSE-------L 220 (1196)
Q Consensus 150 -~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e-------~ 220 (1196)
+....+.-. ......+.-.|+|.|+++.|- ++... ....|..|+.- .+.-..... .
T Consensus 106 ~~~~~~~~~~----------~~~~N~g~EGLA~d~~~~~L~-va~E~----~p~~i~~~~g~~~~~~l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 106 ILKKIKIPLQ----------ESPTNCGFEGLAYSRQDHTFW-FFKEK----NPIEVYKVNGLLSSNELHISKDKALQRQF 170 (255)
T ss_dssp EEEEEECCCS----------SCCCSSCCEEEEEETTTTEEE-EEEES----SSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred eeeeeccccc----------cccccCCcceEEEeCCCCEEE-EEECc----CCceEEEEcccccCCceeeecchhhcccc
Confidence 111111000 002234568999999997665 34311 12345555510 111111111 1
Q ss_pred CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC------CCcEEEEEEccCCCeeEEEEccC
Q 000992 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI------DSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 221 ~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~------~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
.-.-..+|++.|.-..+-..|.. ...+..++.+|.....+.|.... -..-..|++.|+|++ -+.++..
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~-----s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n 244 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHE-----SRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPN 244 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETT-----TTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTT
T ss_pred ccCCceeEEEcCCCCeEEEEECC-----CCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCc
Confidence 12235899999976665555553 46788899999877766665210 124678999999984 4445544
No 309
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.77 E-value=0.031 Score=59.69 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 986 PAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 986 ~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
......++..+|.-+...+++++|..+|.++
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344556666666666666666666666553
No 310
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.73 E-value=0.11 Score=64.71 Aligned_cols=126 Identities=9% Similarity=-0.033 Sum_probs=73.2
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..+++.+||+.++ +++.+ ...+++||..+++-..... +....-.+.+.-|+|++++.|+.........++.+|
T Consensus 246 ~~~~~~~~g~lyv-~GG~~-----~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y 319 (656)
T 1k3i_A 246 PGISMDGNGQIVV-TGGND-----AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 319 (656)
T ss_dssp CEEEECTTSCEEE-ECSSS-----TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred ccccCCCCCCEEE-eCCCC-----CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEe
Confidence 4678899999999 67642 3589999997665444322 122233577788999999998842211223568888
Q ss_pred eCCCeeEEEEEecc----CCCCcEEEEEEccCCCeeEEEEccCC------cceEEEEEecCCEEE
Q 000992 256 ERNGLERSSFDINE----QIDSTVELLKWNCMSDLLAAVVRFEE------YDSVKICFFSNNHWY 310 (1196)
Q Consensus 256 e~nGl~~~~f~l~~----~~~~~V~~laWSpDg~~LAs~~~d~~------~~~V~lW~~~n~~wy 310 (1196)
+.....-. .++. +....-....+..++.+.+.++.++. ...++.|+..+..|.
T Consensus 320 d~~t~~W~--~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~ 382 (656)
T 1k3i_A 320 SPSSKTWT--SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV 382 (656)
T ss_dssp ETTTTEEE--EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred CCCCCcce--eCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee
Confidence 86422111 1110 00000001223456666676665531 236889999887875
No 311
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.73 E-value=0.081 Score=60.57 Aligned_cols=163 Identities=11% Similarity=-0.008 Sum_probs=98.5
Q ss_pred ccHHHHhhCHHHHHHHHHHcCC------CcHHHH------HHHHHHHhcChHHHHhhc----------CCcHHHHHHHHH
Q 000992 938 YTIDLRLQRFENALKHIVSMGD------SYHADC------LNLMKKYAQLFPLGLKLI----------TDPAKMEQVLEA 995 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~------~~~~~a------le~~~~~~~ly~~AL~L~----------~d~~~~~~i~~~ 995 (1196)
+.+...+|+|++|+.++.++-. +....+ -.++... +.|++|++.+ .++.....++..
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 171 (411)
T 4a1s_A 93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM-GRFDEAAICCERHLTLARQLGDRLSEGRALYN 171 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 4555566777777776654310 011111 1112334 4555555544 345566778888
Q ss_pred HHHHHhcccC-----------------HHHHHHHHHhCCCH--------------HHHHHHHHHcCCHHHHHHHHhh---
Q 000992 996 WADHLSDVKC-----------------FEDAATTYFCCSSL--------------EKAMKAYRASGNWSGVLTVAGL--- 1041 (1196)
Q Consensus 996 ~A~~L~~~~~-----------------~~eAa~~y~~ag~~--------------~kAl~~y~~~g~w~~al~la~~--- 1041 (1196)
+|..+...++ |++|..+|.++-.. .....+|...|+|++|+....+
T Consensus 172 l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (411)
T 4a1s_A 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR 251 (411)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8999999999 88888877765221 1223566677777776654433
Q ss_pred ----cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH-------------HHHHHHHHHhcCHHHHHHHHHh
Q 000992 1042 ----LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV-------------TNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1042 ----l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~-------------~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+ +..........+|..+...|++.+|...|.+.+.-. .....+|.+.++|++|+....+
T Consensus 252 ~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 252 IAREFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHT-CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcC-CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22 222333467788999999999999998887643211 2234567788888888776543
No 312
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.73 E-value=0.039 Score=68.75 Aligned_cols=221 Identities=10% Similarity=0.043 Sum_probs=115.7
Q ss_pred EEEEEEccCCCEEEEEE-CCCcEEEEECCCCeEEEeeeecC--cEEEEEECCCCCEEEEEe-CC-----ceEEEEec---
Q 000992 78 ITAFDYLMEKEALIVGT-SSGLLLLHSVDGNATEVVGRVEG--GVRFISPSPDGDLLGVTT-GF-----GQILVMTH--- 145 (1196)
Q Consensus 78 v~~v~~spd~~~La~as-~dG~I~lw~~~~~~~e~vg~~~~--~I~~~awSPDg~~LA~~s-~d-----~tV~l~~~--- 145 (1196)
..+++++++|+.+++|+ .++++.+||+.+++...+..... .=.+++.-|||+++++++ .+ .++.+|+.
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 34577889999999998 45689999999887765543221 123556778999999998 34 35666542
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC---
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA--- 222 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~--- 222 (1196)
.|..+......+.....+ ...-..++.+.-+.+. ||+.+. .. ....+..||..++..........
T Consensus 325 ~W~~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg~-~g~~~~-~~-------~~~~v~~yd~~~~~w~~~~~~~~~~~ 392 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADK---QGLYRSDNHAWLFGWK-KGSVFQ-AG-------PSTAMNWYYTSGSGDVKSAGKRQSNR 392 (656)
T ss_dssp EEEEETTSCSGGGCCCCT---TGGGTTTCSCCEEECG-GGCEEE-CC-------SSSEEEEEECSTTCEEEEEEECEETT
T ss_pred cceeCCCccccccccccc---cceeecCCceEEEECC-CCcEEE-ec-------CccceeeeecCCcceeecCCcccccc
Confidence 233221100000000000 0000012222223322 444333 11 23678999996655333221111
Q ss_pred ------CceeEEEEcC-CCCeEEEEecCCC--CCCCC---eEEEEeCCCeeEEEEEe-ccCCCCcEEEEEEccCCCeeEE
Q 000992 223 ------FMGAVLEWMP-SGANIAAVYDRKS--ENKCP---SIVFYERNGLERSSFDI-NEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 223 ------~~v~slawsP-dG~~IAs~s~d~~--~~~~~---~V~~~e~nGl~~~~f~l-~~~~~~~V~~laWSpDg~~LAs 289 (1196)
..-.++.|.+ +|++++.|+.+.. ..... .|.+|+.+...-.+... ..+....-...+..|||+++++
T Consensus 393 ~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~ 472 (656)
T 1k3i_A 393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFIT 472 (656)
T ss_dssp EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEE
T ss_pred ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEE
Confidence 1224555654 7888888875321 00011 56667654322111110 1111111234567799999999
Q ss_pred EEccCC--------cceEEEEEecCCEEE
Q 000992 290 VVRFEE--------YDSVKICFFSNNHWY 310 (1196)
Q Consensus 290 ~~~d~~--------~~~V~lW~~~n~~wy 310 (1196)
++.+.. -..+.+||..+..|.
T Consensus 473 GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 473 GGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp CCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 986521 237899999888884
No 313
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.73 E-value=3 Score=55.20 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=50.6
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee--ecCcEEEEEECCCC------CEEEEEeC-CceEEEEe-cc
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR--VEGGVRFISPSPDG------DLLGVTTG-FGQILVMT-HD 146 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~--~~~~I~~~awSPDg------~~LA~~s~-d~tV~l~~-~~ 146 (1196)
.|+..+.. +.++++++ +|.|..+..+.+.+..+.. .++.|.|++++|.+ ..+|+|.. |++|.+.+ .+
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 45555433 35777775 7788887776555443332 35789999999753 69999996 99999987 34
Q ss_pred Cceeeeeec
Q 000992 147 WDLLYENPL 155 (1196)
Q Consensus 147 ~d~~~~~~l 155 (1196)
.+++....+
T Consensus 592 l~~~~~~~L 600 (1158)
T 3ei3_A 592 FELLHKEML 600 (1158)
T ss_dssp CCEEEEEEC
T ss_pred CCeEEEEEC
Confidence 444444444
No 314
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.71 E-value=0.13 Score=58.13 Aligned_cols=117 Identities=15% Similarity=0.056 Sum_probs=72.9
Q ss_pred CcHHHHHHHHHHHHHHhcccC--------------------HHHHHHHHHhCCCH--------------HHHHHHHHHcC
Q 000992 985 DPAKMEQVLEAWADHLSDVKC--------------------FEDAATTYFCCSSL--------------EKAMKAYRASG 1030 (1196)
Q Consensus 985 d~~~~~~i~~~~A~~L~~~~~--------------------~~eAa~~y~~ag~~--------------~kAl~~y~~~g 1030 (1196)
++.....++..+|..+...++ |++|..+|.++-.. .....+|...|
T Consensus 122 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 201 (406)
T 3sf4_A 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 201 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcc
Confidence 444455567777777777777 77777666654221 12224555566
Q ss_pred CHHHHHHH-------HhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc------CCHH-------HHHHHHHHh
Q 000992 1031 NWSGVLTV-------AGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC------GDVT-------NGISLLIDA 1090 (1196)
Q Consensus 1031 ~w~~al~l-------a~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl------~d~~-------~Ai~~y~~~ 1090 (1196)
++++|+.. +...+ +..........+|..+...|++.+|...|.+.+ ++.. ....+|.+.
T Consensus 202 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 280 (406)
T 3sf4_A 202 NFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 280 (406)
T ss_dssp BHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh
Confidence 66655543 33333 333444577888999999999999998887643 2221 234567788
Q ss_pred cCHHHHHHHHHh
Q 000992 1091 RDWEEALRVAFM 1102 (1196)
Q Consensus 1091 ~~w~eA~rla~~ 1102 (1196)
++|++|+....+
T Consensus 281 g~~~~A~~~~~~ 292 (406)
T 3sf4_A 281 QDYEKAIDYHLK 292 (406)
T ss_dssp TCHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 889888776543
No 315
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.70 E-value=0.51 Score=52.85 Aligned_cols=198 Identities=12% Similarity=0.023 Sum_probs=113.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccc---cccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECC
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQN---ERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~d 96 (1196)
.+.+++||++++.||.+.. .+.|+.++++ .. .....+ ++.+ ...+.+|++.+.+..|..+ ...
T Consensus 31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~--g~~~~~~~~~~--~~~~--------~~~p~glavd~~~~~ly~~d~~~ 98 (316)
T 1ijq_A 31 NVVALDTEVASNRIYWSDLSQRMICSTQLD--RAHGVSSYDTV--ISRD--------IQAPDGLAVDWIHSNIYWTDSVL 98 (316)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC----------CEEE--ECSS--------CSCCCEEEEETTTTEEEEEETTT
T ss_pred ceEEEEEEeCCCEEEEEECCCCcEEEEECC--CCCCCcccEEE--EeCC--------CCCcCEEEEeecCCeEEEEECCC
Confidence 5789999999999999865 5679999883 21 110011 1111 1356788998766655544 667
Q ss_pred CcEEEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeC-C-ceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 97 GLLLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTG-F-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 97 G~I~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~-d-~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
+.|.+.+.++.....+.. .-..-..++..|++..|-.+.. . +.|...+.++....... . .. -
T Consensus 99 ~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~-~-~~-------------~ 163 (316)
T 1ijq_A 99 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-T-EN-------------I 163 (316)
T ss_dssp TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-C-SS-------------C
T ss_pred CEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE-E-CC-------------C
Confidence 899999998865553332 1245789999997776665543 2 56665554443221111 0 00 0
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-cc--CCCceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-EL--KAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~--~~~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
..-..|+|+|++..|- ++. ...+.|.++|. +|....+. .. .-.....|++. .| .|..+... ..
T Consensus 164 ~~P~gla~d~~~~~lY-~~D-----~~~~~I~~~d~-dg~~~~~~~~~~~~~~~P~giav~-~~-~ly~~d~~-----~~ 229 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLY-WVD-----SKLHSISSIDV-NGGNRKTILEDEKRLAHPFSLAVF-ED-KVFWTDII-----NE 229 (316)
T ss_dssp SCEEEEEEETTTTEEE-EEE-----TTTTEEEEEET-TSCSCEEEEECTTTTSSEEEEEEE-TT-EEEEEETT-----TT
T ss_pred CCceEEEEeccCCEEE-EEE-----CCCCeEEEEec-CCCceEEEeecCCccCCcEEEEEE-CC-EEEEEECC-----CC
Confidence 1336899999877655 332 23578999999 56433332 11 12233566663 33 33333332 24
Q ss_pred eEEEEeC-CCe
Q 000992 251 SIVFYER-NGL 260 (1196)
Q Consensus 251 ~V~~~e~-nGl 260 (1196)
.|..+++ +|.
T Consensus 230 ~V~~~~~~~g~ 240 (316)
T 1ijq_A 230 AIFSANRLTGS 240 (316)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEeCCCCc
Confidence 6666664 443
No 316
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0074 Score=63.90 Aligned_cols=102 Identities=7% Similarity=-0.043 Sum_probs=61.2
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc----CCcHHHHHHHHHHHHHHhcccCHHHHH
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~~~~~~eAa 1010 (1196)
...+.+...+|+|++|+..|.++-. ...--+...+. +.|++|++.+ ........++..+|..+...++|++|.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLT--EHRTADILTKL-RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh--cCchhHHHHHH-hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHH
Confidence 3445667788999999998887621 00012345556 6788888877 233345566777777777777777777
Q ss_pred HHHHhCCC--------HHHHHHHHHHcCCHHHHHHHH
Q 000992 1011 TTYFCCSS--------LEKAMKAYRASGNWSGVLTVA 1039 (1196)
Q Consensus 1011 ~~y~~ag~--------~~kAl~~y~~~g~w~~al~la 1039 (1196)
..|.++-. +-....+|...|+|++|+...
T Consensus 160 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77766521 122234455555555555433
No 317
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.65 E-value=0.0073 Score=62.46 Aligned_cols=77 Identities=8% Similarity=0.006 Sum_probs=36.1
Q ss_pred ccHHHHhhCHHHHHHHHHHc---CCCcHH---HHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcc-cC
Q 000992 938 YTIDLRLQRFENALKHIVSM---GDSYHA---DCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDV-KC 1005 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~---g~~~~~---~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~-~~ 1005 (1196)
+.+....|+|++|++.|.++ .++..+ ..-..+... +.|++|++++ .+|. ...++..+|..+... ++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIKPD-SAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCc
Confidence 34444566677776666543 111111 111122344 5566666555 1222 123444555555555 55
Q ss_pred HHHHHHHHHhC
Q 000992 1006 FEDAATTYFCC 1016 (1196)
Q Consensus 1006 ~~eAa~~y~~a 1016 (1196)
+++|...|.++
T Consensus 93 ~~~A~~~~~~~ 103 (225)
T 2vq2_A 93 PAESMAYFDKA 103 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65555555544
No 318
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.63 E-value=0.017 Score=68.86 Aligned_cols=162 Identities=8% Similarity=-0.040 Sum_probs=106.1
Q ss_pred hcccHHHHhhCHHHHHHHHHHcC---CCcHHHHHH----HHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcc
Q 000992 936 MRYTIDLRLQRFENALKHIVSMG---DSYHADCLN----LMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~g---~~~~~~ale----~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
..+.+....|+|++|+..|.++- ++ ..+.- .+... +.|++|++.+ .+|. ...++..+|..+...
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADK-ENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCS-SCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHh-cCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhc
Confidence 34466677889999999888652 22 11211 12344 6677777776 2333 345677889999999
Q ss_pred cCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000992 1004 KCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
++|++|...|.++-. +-....+|...|+|++|+.+..+. ...+.. ......+|..+...|++.+|...|.
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-PEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999987632 223457888889999998766542 111111 2466778999999999999999987
Q ss_pred HhcCCH-------------HHHHHHHHHh----------cCHHHHHHHHHh
Q 000992 1075 DYCGDV-------------TNGISLLIDA----------RDWEEALRVAFM 1102 (1196)
Q Consensus 1075 ~yl~d~-------------~~Ai~~y~~~----------~~w~eA~rla~~ 1102 (1196)
+.+... -....+|.+. ++|++|+....+
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 733211 1112455555 888888876554
No 319
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.62 E-value=0.19 Score=54.74 Aligned_cols=116 Identities=15% Similarity=0.047 Sum_probs=64.2
Q ss_pred CcHHHHHHHHHHHHHHhcccC--------------------HHHHHHHHHhCCCH--------------HHHHHHHHHcC
Q 000992 985 DPAKMEQVLEAWADHLSDVKC--------------------FEDAATTYFCCSSL--------------EKAMKAYRASG 1030 (1196)
Q Consensus 985 d~~~~~~i~~~~A~~L~~~~~--------------------~~eAa~~y~~ag~~--------------~kAl~~y~~~g 1030 (1196)
++.....++...|..+...++ +++|...|.++-.. .....+|...|
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 197 (338)
T 3ro2_A 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC
Confidence 333444566666666666666 66666666544211 11123444555
Q ss_pred CHHHHHHHH-------hhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc------CCH-------HHHHHHHHHh
Q 000992 1031 NWSGVLTVA-------GLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC------GDV-------TNGISLLIDA 1090 (1196)
Q Consensus 1031 ~w~~al~la-------~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl------~d~-------~~Ai~~y~~~ 1090 (1196)
++++|+... ...+ ++.........+|..+...|++.+|...+.+.+ ++. .....+|...
T Consensus 198 ~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 198 NFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 555555433 3322 233334466777888888888888888776632 221 1223456667
Q ss_pred cCHHHHHHHHH
Q 000992 1091 RDWEEALRVAF 1101 (1196)
Q Consensus 1091 ~~w~eA~rla~ 1101 (1196)
++|++|+....
T Consensus 277 g~~~~A~~~~~ 287 (338)
T 3ro2_A 277 QDYEKAIDYHL 287 (338)
T ss_dssp TCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 77777766543
No 320
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.60 E-value=0.2 Score=57.29 Aligned_cols=103 Identities=12% Similarity=0.020 Sum_probs=61.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC---CCEEEEEECC--
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME---KEALIVGTSS-- 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd---~~~La~as~d-- 96 (1196)
.+.++++++++. ||++...+.|+.++- ...+ .+.+++ +. ......+.+|+|+|| +..|.++...
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~~--g~~~---~~~~~~--v~---~~g~~~p~gia~~pdf~~~g~lYv~~~~~~ 100 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFRE--GRLS---TYAELS--VY---HRGESGLLGLALHPRFPQEPYVYAYRTVAE 100 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEET--TEEE---EEEECC--CC---CSTTCSEEEEEECTTTTTSCEEEEEEEECT
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEEC--CCcc---Eeecce--Ee---ecCCCCceeEEECCCCCCCCEEEEEEecCC
Confidence 577899999987 787777788888872 2211 122222 00 001357999999999 5566555432
Q ss_pred ----CcEEEEECCCCeE---E-Eeeeec------CcEEEEEECCCCCEEEEEe
Q 000992 97 ----GLLLLHSVDGNAT---E-VVGRVE------GGVRFISPSPDGDLLGVTT 135 (1196)
Q Consensus 97 ----G~I~lw~~~~~~~---e-~vg~~~------~~I~~~awSPDg~~LA~~s 135 (1196)
+.|..++.+++.+ + ++.... ..-..++|+|||.+.++.+
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 5677788765422 1 221111 1235799999997665543
No 321
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.60 E-value=0.02 Score=64.40 Aligned_cols=79 Identities=13% Similarity=0.014 Sum_probs=41.0
Q ss_pred cccHHHHhhCHHHHHHHHHHcC---CCcH----HH--------------HHHHHHHHhcChHHHHhhc-----CCcHH-H
Q 000992 937 RYTIDLRLQRFENALKHIVSMG---DSYH----AD--------------CLNLMKKYAQLFPLGLKLI-----TDPAK-M 989 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~g---~~~~----~~--------------ale~~~~~~~ly~~AL~L~-----~d~~~-~ 989 (1196)
.+.+...+|++++|+..|.++- +... .. .+..+... +.|++|++++ .+|.. .
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~ 216 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD-SLFLEVKELFLAAVRLDPTSID 216 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH-HHHHHHHHHHHHHHHHSTTSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc-ccHHHHHHHHHHHHHhCcCccc
Confidence 3456666788888888877541 1100 00 11112255 5677777666 23321 2
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
..++..+|..+...++|++|...|.++
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555566666666666665555543
No 322
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.58 E-value=0.88 Score=52.87 Aligned_cols=164 Identities=13% Similarity=-0.024 Sum_probs=99.7
Q ss_pred CCEEEEEEccCCCEEEEE-ECCCcEEEEECCCC----eE-EEeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCc
Q 000992 76 DSITAFDYLMEKEALIVG-TSSGLLLLHSVDGN----AT-EVVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a-s~dG~I~lw~~~~~----~~-e~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d 148 (1196)
..+.+|+|.+..+.|..+ ...+.|..+++++. .. .+++..-.....+++.+.+..|..+ +..+.|.+.+.+..
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 578999999977777665 45678888988762 22 3333223467889999865555555 45677776654443
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeE
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAV 227 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~s 227 (1196)
...... ... -..-..|+..|.+.++. .+.. .....|...+. +|...... ...-.....
T Consensus 192 ~~~~l~-~~~--------------~~~P~~iavdp~~g~ly-~td~----~~~~~I~~~~~-dG~~~~~~~~~~l~~P~g 250 (400)
T 3p5b_L 192 KRKTLF-REN--------------GSKPRAIVVDPVHGFMY-WTDW----GTPAKIKKGGL-NGVDIYSLVTENIQWPNG 250 (400)
T ss_dssp SEEEEE-ECS--------------SCCEEEEEEETTTTEEE-EEEC----SSSCCEEEEET-TSCSCEEEECSSCSCEEE
T ss_pred ceEEEE-eCC--------------CCCcceEEEecccCeEE-EEeC----CCCCEEEEEeC-CCCccEEEEECCCCceEE
Confidence 222111 100 12346889998655444 3321 12367888898 77554443 222245589
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f 265 (1196)
|+|.|++..|-.+... ...|..++.+|.....+
T Consensus 251 lavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~ 283 (400)
T 3p5b_L 251 ITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTI 283 (400)
T ss_dssp EEEETTTTEEEEEETT-----TTEEEEEETTSCCCEEE
T ss_pred EEEEeCCCEEEEEECC-----CCEEEEEeCCCCccEEE
Confidence 9999999888777543 36788888888654433
No 323
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.58 E-value=0.52 Score=53.64 Aligned_cols=174 Identities=11% Similarity=0.018 Sum_probs=102.2
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I 99 (1196)
.+.+++||+.++.||.+.. .+.|+.++. ..+..+ .+. ..+ ...+.++++.+.+..|..+ +..+.|
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~--~g~~~~-~~~--~~~--------~~~p~glavd~~~g~ly~~d~~~~~I 140 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANL--NGSNVE-EVV--STG--------LESPGGLAVDWVHDKLYWTDSGTSRI 140 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEET--TSCSCE-EEE--CSS--------CSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEec--CCCCce-EEE--eCC--------CCCccEEEEecCCCeEEEEcCCCCeE
Confidence 5788999999999999854 667999988 333221 110 111 1356788898866665444 556789
Q ss_pred EEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEe-CC-ceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTT-GF-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s-~d-~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.+.+.++.....+.. .-..-..++++|++..|-.+. +. +.|...+.++...... +. .. -..-
T Consensus 141 ~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~~-~~-------------~~~P 205 (349)
T 3v64_C 141 EVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-AD-TH-------------LFWP 205 (349)
T ss_dssp EEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES-CC-SS-------------CSCE
T ss_pred EEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE-EE-CC-------------CCCc
Confidence 999998764433221 124568899999776665554 33 5565554443221111 00 00 0123
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCceeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEW 230 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~slaw 230 (1196)
..|+|+|++..|- ++- ...+.|..++. +|....+ .....+....|+.
T Consensus 206 nGla~d~~~~~lY-~aD-----~~~~~I~~~~~-dG~~~~~~~~~~~~~P~giav 253 (349)
T 3v64_C 206 NGLTIDYAGRRMY-WVD-----AKHHVIERANL-DGSHRKAVISQGLPHPFAITV 253 (349)
T ss_dssp EEEEEETTTTEEE-EEE-----TTTTEEEEEET-TSCSCEEEECSSCSSEEEEEE
T ss_pred ceEEEeCCCCEEE-EEE-----CCCCEEEEEeC-CCCceEEEEeCCCCCceEEEE
Confidence 6899998777555 332 24578999998 6643332 2222233456666
No 324
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.54 E-value=0.41 Score=55.36 Aligned_cols=198 Identities=11% Similarity=-0.020 Sum_probs=112.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I 99 (1196)
.+.+++||+.++.||.+.. .+.|+.+++ ..+..+ .+ +..+ ...+.++++.+.+..|..+ +..+.|
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~--~g~~~~-~~--~~~~--------~~~p~glavd~~~g~lY~~d~~~~~I 183 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANL--NGSNVE-EV--VSTG--------LESPGGLAVDWVHDKLYWTDSGTSRI 183 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEET--TSCCEE-EE--ECSS--------CSCCCCEEEETTTTEEEEEETTTTEE
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEec--CCCCcE-EE--EeCC--------CCCccEEEEEeCCCeEEEEcCCCCeE
Confidence 6788999999999999854 567999988 333221 11 0111 1345678888866666544 456778
Q ss_pred EEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeC-C-ceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTG-F-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~-d-~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.+.+.++.....+.. --..-..++++|++..|-.+.. . +.|...+.++....... ... -..-
T Consensus 184 ~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~~~--------------~~~P 248 (386)
T 3v65_B 184 EVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-DTH--------------LFWP 248 (386)
T ss_dssp EECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSS--------------CSCE
T ss_pred EEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE-ECC--------------CCCe
Confidence 888888754332221 1245788999998777666643 3 45655544433221111 000 0123
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..|+|+|++..|- ++- ...+.|+.++. +|....+ .....+....|+. ..|.+.. +... ...|.-+
T Consensus 249 nGlavd~~~~~lY-~aD-----~~~~~I~~~d~-dG~~~~~~~~~~~~~P~giav-~~~~ly~-td~~-----~~~V~~~ 314 (386)
T 3v65_B 249 NGLTIDYAGRRMY-WVD-----AKHHVIERANL-DGSHRKAVISQGLPHPFAITV-FEDSLYW-TDWH-----TKSINSA 314 (386)
T ss_dssp EEEEEEGGGTEEE-EEE-----TTTTEEEEECT-TSCSCEEEECSSCSSEEEEEE-ETTEEEE-EETT-----TTEEEEE
T ss_pred eeEEEeCCCCEEE-EEE-----CCCCEEEEEeC-CCCeeEEEEECCCCCceEEEE-ECCEEEE-eeCC-----CCeEEEE
Confidence 6899998777655 342 24578999998 5543332 2222233466777 3333333 3332 2456666
Q ss_pred e-CCCee
Q 000992 256 E-RNGLE 261 (1196)
Q Consensus 256 e-~nGl~ 261 (1196)
+ .+|..
T Consensus 315 ~~~~G~~ 321 (386)
T 3v65_B 315 NKFTGKN 321 (386)
T ss_dssp ETTTCCS
T ss_pred ECCCCcc
Confidence 6 35543
No 325
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=96.51 E-value=0.038 Score=64.34 Aligned_cols=132 Identities=15% Similarity=0.198 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhhcChHHHHHHHHhccChhHHHHHHHHhcCCcchh-----hHHHHHHhcCChhhhcccHHHHhhCHHHHH
Q 000992 877 SAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEF-----LPYLQELESMPPLLMRYTIDLRLQRFENAL 951 (1196)
Q Consensus 877 ~a~~al~~l~~L~d~~~Ly~~ALg~yD~~lal~vAq~sq~DpkeY-----lpfL~~L~~l~~~~~r~~Id~~L~ry~~Al 951 (1196)
.+++.|+-.+.+=|.+.=-+.||..=-+-=|+++|.. .+|.-| --|+++-..-. .|-..+
T Consensus 145 ~~d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~--gg~el~~~~vq~~Y~~k~~~~~-------------~~~rll 209 (399)
T 2pm7_A 145 NIEQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALD--SNNERLKESVKNAYFAKYGSKS-------------SLSRIL 209 (399)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTT--CCCHHHHHHHHHHHHHHHTTSC-------------HHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHh--cCHHHHHHHHHHHHHHhcccCc-------------hHHHHH
Confidence 5667777777777777777788877777778888853 666543 11222221101 122333
Q ss_pred HHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc---CCcH--HHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHH
Q 000992 952 KHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPA--KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAY 1026 (1196)
Q Consensus 952 ~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~---~d~~--~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y 1026 (1196)
..+.. + + +++.+.-. +. .-|+++|.+. .+++ +...+|..+|+-|+..++.+.|.+.|+.||+.+|.++++
T Consensus 210 ~~iv~-~-n-~~d~V~~~-~l-~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW 284 (399)
T 2pm7_A 210 YSISK-R-E-VDDLVENL-DV-SQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIW 284 (399)
T ss_dssp HHHHT-T-C-CHHHHHHB-CG-GGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHc-c-C-HHHHHhcC-Ch-hhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHH
Confidence 33332 2 2 34444432 56 7899999987 5678 999999999999999999999999999999999999998
Q ss_pred HH
Q 000992 1027 RA 1028 (1196)
Q Consensus 1027 ~~ 1028 (1196)
..
T Consensus 285 ~~ 286 (399)
T 2pm7_A 285 LS 286 (399)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 326
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.43 E-value=0.067 Score=54.40 Aligned_cols=112 Identities=9% Similarity=-0.021 Sum_probs=50.0
Q ss_pred HhhCHHHHHH---HHHHcCCCc----HHHHHHHHHHHhcChHHHHhhc----------CCcHHHHHHHHHHHHHHhcccC
Q 000992 943 RLQRFENALK---HIVSMGDSY----HADCLNLMKKYAQLFPLGLKLI----------TDPAKMEQVLEAWADHLSDVKC 1005 (1196)
Q Consensus 943 ~L~ry~~Al~---~l~~~g~~~----~~~ale~~~~~~~ly~~AL~L~----------~d~~~~~~i~~~~A~~L~~~~~ 1005 (1196)
..|+|++|.+ .+....... ...+. +.... +.|++|++.+ .++.....++...|.
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~------- 74 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGY-VYAFM-DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGM------- 74 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHH-HHHHT-TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-------
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHh-CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-------
Confidence 4688888888 664421111 01111 12344 5566665554 133333334433343
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1006 FEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+|...|++++|++.| ++++.++...+.++.........+|..+...|++.+|...+.+
T Consensus 75 ------~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 75 ------VERMAGNWDAARRCF------LEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp ------HHHHTTCHHHHHHHH------HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------HHHHcCCHHHHHHHH------HHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444444445444443 3344444443322222233445556666666666666555443
No 327
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.43 E-value=0.94 Score=52.62 Aligned_cols=162 Identities=12% Similarity=0.057 Sum_probs=98.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEeccccccc--ccceeeccccccccccCCCCCCEEEEEEccCCCEEEE-EECCC
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNE--RASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~-as~dG 97 (1196)
.+.+++||+.++.||.+.. .+.|+.++++ ... ..... +.... ...+.++++.+.+..|.. -+..+
T Consensus 113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~--g~~~~~~~~~------~~~~~---~~~p~glavD~~~~~lY~~d~~~~ 181 (400)
T 3p5b_L 113 NVVALDTEVASNRIYWSDLSQRMICSTQLD--RAHGVSSYDT------VISRD---IQAPDGLAVDWIHSNIYWTDSVLG 181 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC--------CCCEE------EECSS---CSCEEEEEEETTTTEEEEEETTTT
T ss_pred cceEEeeeeccCceEEEecCCCeEEEEEcc--cCCCCCcceE------EEeCC---CCCcccEEEEecCCceEEEECCCC
Confidence 6789999999999999965 5678888883 211 10011 11111 246889999986555554 45678
Q ss_pred cEEEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEe-C-CceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTT-G-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s-~-d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.|.+.+++++....+.. .-.....++..|.+..|..+. + .+.|...+.++....... ... -.
T Consensus 182 ~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~-~~~--------------l~ 246 (400)
T 3p5b_L 182 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-TEN--------------IQ 246 (400)
T ss_dssp EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE-CSS--------------CS
T ss_pred eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE-ECC--------------CC
Confidence 89999999876553332 123478999999877776664 2 255655544433221111 000 01
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA 216 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~ 216 (1196)
.-..|+|++++..|- ++- .....|+..|. +|....
T Consensus 247 ~P~glavd~~~~~lY-~aD-----~~~~~I~~~d~-dG~~~~ 281 (400)
T 3p5b_L 247 WPNGITLDLLSGRLY-WVD-----SKLHSISSIDV-NGGNRK 281 (400)
T ss_dssp CEEEEEEETTTTEEE-EEE-----TTTTEEEEEET-TSCCCE
T ss_pred ceEEEEEEeCCCEEE-EEE-----CCCCEEEEEeC-CCCccE
Confidence 337899998877665 442 24578999999 665433
No 328
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.41 E-value=0.11 Score=64.92 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=56.2
Q ss_pred EEeeecCCCEEEEEeCCC-------------------cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc
Q 000992 25 FSALDIEQNRLFFASSAN-------------------NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM 85 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~-------------------~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp 85 (1196)
..++|++++.||+++.++ .|+.+|. .+++..|.....+.+.. ++.....+.......
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~--~tG~~~W~~~~~~~~~w--d~~~~~~~~~~d~~~ 309 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP--DTGKLAWHYQVTPGDSW--DFTATQQITLAELNI 309 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT--TTCCEEEEEESSTTCCS--CCCCCSCEEEEEEEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcC--CCCceeeEeecCCCccc--cccCCCCcEEEEecc
Confidence 478999999999998765 3999999 78887777653221111 010112333344445
Q ss_pred CCC---EEEEEECCCcEEEEECCCCeEE
Q 000992 86 EKE---ALIVGTSSGLLLLHSVDGNATE 110 (1196)
Q Consensus 86 d~~---~La~as~dG~I~lw~~~~~~~e 110 (1196)
||+ .|++++.+|.+..+|..+|++.
T Consensus 310 ~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 310 DGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 776 6889999999999999987653
No 329
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.39 E-value=0.018 Score=68.89 Aligned_cols=137 Identities=9% Similarity=-0.066 Sum_probs=82.7
Q ss_pred hhcccHHHHhhCH-HHHHHHHHHc---CCCcH----HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHh
Q 000992 935 LMRYTIDLRLQRF-ENALKHIVSM---GDSYH----ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLS 1001 (1196)
Q Consensus 935 ~~r~~Id~~L~ry-~~Al~~l~~~---g~~~~----~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~ 1001 (1196)
+.++.+...+|+| ++|+++|.++ .++.. ..+ ..+... +.|++|++.| .+|. ..++..+|.-+.
T Consensus 106 ~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg-~~~~~~-g~~~~A~~~~~~al~~~p~--~~~~~~lg~~~~ 181 (474)
T 4abn_A 106 MLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLG-EVYWKK-GDVTSAHTCFSGALTHCKN--KVSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHH-TCHHHHHHHHHHHHTTCCC--HHHHHHHHHHHT
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHH
Confidence 4445666678899 9999988765 33221 222 233566 7899998887 4666 488889999999
Q ss_pred cc---------cCHHHHHHHHHhCCCH--------HHHHHHHHHc--------CCHHHHHHHHhhc-CCCHH--HHHHHH
Q 000992 1002 DV---------KCFEDAATTYFCCSSL--------EKAMKAYRAS--------GNWSGVLTVAGLL-KLGKD--EVAKLA 1053 (1196)
Q Consensus 1002 ~~---------~~~~eAa~~y~~ag~~--------~kAl~~y~~~--------g~w~~al~la~~l-~~~~~--~~~~l~ 1053 (1196)
.. ++|++|...|.++-.. -.--.+|... |+|++|+....+. ..++. ......
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 261 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHH
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHH
Confidence 99 9999999998876211 1122444444 5566665443321 11220 112345
Q ss_pred HHHHHHHHHcCChHHHHHHHHH
Q 000992 1054 QELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1054 ~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..+|..+...|+|.+|...|.+
T Consensus 262 ~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 262 LNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666666666666555444
No 330
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.35 E-value=0.029 Score=63.33 Aligned_cols=20 Identities=5% Similarity=-0.075 Sum_probs=13.8
Q ss_pred ccHHHHhhCHHHHHHHHHHc
Q 000992 938 YTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~ 957 (1196)
+.+...+|+|++|+.+|.++
T Consensus 140 ~~~~~~~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNW 159 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHH
Confidence 45556677888888777654
No 331
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.34 E-value=0.0033 Score=66.23 Aligned_cols=24 Identities=17% Similarity=-0.064 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+...|++.+|...+.+
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445566666666666666666655
No 332
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.33 E-value=1 Score=50.59 Aligned_cols=199 Identities=11% Similarity=0.026 Sum_probs=113.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE-EECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~-as~dG~I 99 (1196)
...+++||+.++.||.+.. .+.|+.++++ .......+ +..+ + ..+.++++.+.+..|.. -+..+.|
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~--g~~~~~~~--~~~~-----l---~~p~glavd~~~g~ly~~d~~~~~I 103 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFN--KTESVQNV--VVSG-----L---LSPDGLACDWLGEKLYWTDSETNRI 103 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETT--SSSCCCEE--EEEC-----C---SCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEcc--CCCceEEE--EcCC-----C---CCccEEEEEcCCCeEEEEECCCCEE
Confidence 5678899999999999854 5678899883 22211111 1111 1 35678888876655544 4566789
Q ss_pred EEEECCCCeEEEee-eecCcEEEEEECCCCCEEEEEeC--CceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVG-RVEGGVRFISPSPDGDLLGVTTG--FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg-~~~~~I~~~awSPDg~~LA~~s~--d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.+++.++.....+. ..-..-..+++.|++..|..+.. .+.|...+.++....... ... + ..-
T Consensus 104 ~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~~~-----l---------~~P 168 (318)
T 3sov_A 104 EVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-NSE-----I---------YWP 168 (318)
T ss_dssp EEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE-CSS-----C---------SCE
T ss_pred EEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE-ECC-----C---------CCc
Confidence 99999886444332 21245688999998777766652 456665554443221110 000 0 123
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..|+|+|++..|- ++- ...+.|..+|. +|....+. ...-+....++.. +..|.-+... ...|..+
T Consensus 169 nglavd~~~~~lY-~aD-----~~~~~I~~~d~-dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~-----~~~V~~~ 234 (318)
T 3sov_A 169 NGLTLDYEEQKLY-WAD-----AKLNFIHKSNL-DGTNRQAVVKGSLPHPFALTLF--EDILYWTDWS-----THSILAC 234 (318)
T ss_dssp EEEEEETTTTEEE-EEE-----TTTTEEEEEET-TSCSCEEEECSCCSCEEEEEEE--TTEEEEEETT-----TTEEEEE
T ss_pred cEEEEeccCCEEE-EEE-----CCCCEEEEEcC-CCCceEEEecCCCCCceEEEEe--CCEEEEEecC-----CCeEEEE
Confidence 6899999776554 332 24578999998 55433332 2222333556653 3333333332 3467667
Q ss_pred eC-CCee
Q 000992 256 ER-NGLE 261 (1196)
Q Consensus 256 e~-nGl~ 261 (1196)
++ +|..
T Consensus 235 ~~~~G~~ 241 (318)
T 3sov_A 235 NKYTGEG 241 (318)
T ss_dssp ETTTCCS
T ss_pred ECCCCCc
Confidence 76 4543
No 333
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.32 E-value=0.059 Score=59.03 Aligned_cols=131 Identities=8% Similarity=-0.011 Sum_probs=79.8
Q ss_pred HHHhhCHHHHHHHHHHc---CCCcH---HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHH
Q 000992 941 DLRLQRFENALKHIVSM---GDSYH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 941 d~~L~ry~~Al~~l~~~---g~~~~---~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eA 1009 (1196)
...+|++++|++.+.++ .++.. -..-..+... +.|++|++++ .+|. ...++..+|..+...+++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS-NNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHH
Confidence 45678899999888765 22211 1112233566 7888888877 2333 245677888899999999999
Q ss_pred HHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHH-----H------HHHHHHHHHHHHHHcCChHHH
Q 000992 1010 ATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKD-----E------VAKLAQELCEELQALGKPGEA 1069 (1196)
Q Consensus 1010 a~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~-----~------~~~l~~~la~~L~~~~~~~eA 1069 (1196)
...|.++-. +-....+|...|+|++|+....+. ...++ . .......++..+...|++.+|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 999887621 223346777888888887655432 00111 0 233445556666666666666
Q ss_pred HHHH
Q 000992 1070 AKIA 1073 (1196)
Q Consensus 1070 a~i~ 1073 (1196)
..++
T Consensus 306 ~~~~ 309 (327)
T 3cv0_A 306 ELTY 309 (327)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5554
No 334
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.30 E-value=0.04 Score=58.34 Aligned_cols=137 Identities=8% Similarity=-0.070 Sum_probs=90.1
Q ss_pred cccHHHHhhCHHHHHHHHHHc---CCCcHH---HHHHHHHHHhcChHHHHhhc----C--CcHHHHHHHHHHHHHHhccc
Q 000992 937 RYTIDLRLQRFENALKHIVSM---GDSYHA---DCLNLMKKYAQLFPLGLKLI----T--DPAKMEQVLEAWADHLSDVK 1004 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~---g~~~~~---~ale~~~~~~~ly~~AL~L~----~--d~~~~~~i~~~~A~~L~~~~ 1004 (1196)
.+.+...+|+|++|++.|.++ .++... ..-.++... +.|++|++++ . .......++..+|..+...+
T Consensus 77 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 77 LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ-KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC
Confidence 355666789999999988764 222221 122334567 8899999888 3 34456678888999999999
Q ss_pred CHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1005 CFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1005 ~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
++++|...|.++-. +.....+|...|++++|+....+. ...+.. ......++..+...|++.+|.+.+.+
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN-ARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999987522 234446788888999888766542 112211 23445556666666666666666554
No 335
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.27 E-value=0.13 Score=62.96 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=52.6
Q ss_pred EEeeecCCCEEEEEeCC----------------CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC
Q 000992 25 FSALDIEQNRLFFASSA----------------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE 88 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~ 88 (1196)
..++|++.+.||+++.+ +.|+.+|. .+++..|.....+.+.- ++.....+.-+...+||+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~--~tG~~~W~~~~~~~d~~--d~~~~~~p~l~~~~~~G~ 314 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDL--DTGMAKWGYQKTPHDEW--DFAGVNQMVLTDQPVNGK 314 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEET--TTCCEEEEEESSTTCSS--CCCCCCCCEEEEEEETTE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEec--CCCcEEEEecCCCCccc--ccccCCCCEEEecccCCc
Confidence 46899999999998743 24999999 77777777653211100 000011222234446884
Q ss_pred ---EEEEEECCCcEEEEECCCCeE
Q 000992 89 ---ALIVGTSSGLLLLHSVDGNAT 109 (1196)
Q Consensus 89 ---~La~as~dG~I~lw~~~~~~~ 109 (1196)
.++.++.+|.+..+|..++++
T Consensus 315 ~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 315 MTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp EEEEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEEEeCCCcEEEEEECCCCCE
Confidence 677888999999999988765
No 336
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.25 E-value=0.14 Score=56.25 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=37.4
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+.+|...|++++|++.| ++|+.++...+.++......+..+|..+...|+|.+|...|.+
T Consensus 162 g~~y~~~~~~~~A~~~~------~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 162 ANIYAENGYLKKGIDLF------EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHTTCHHHHHHHH------HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH------HHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 45566666666666666 3444454444422222225677788888888888888887666
No 337
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.23 E-value=0.015 Score=58.87 Aligned_cols=76 Identities=7% Similarity=-0.080 Sum_probs=34.2
Q ss_pred ccHHHHhhCHHHHHHHHHHc---CCCcHHHH---HHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCH
Q 000992 938 YTIDLRLQRFENALKHIVSM---GDSYHADC---LNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCF 1006 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~---g~~~~~~a---le~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~ 1006 (1196)
+.+....|+|++|+.+|.++ .++..+-- -..+.+. +.|++|++.+ .+|. ...++..+|..+...+++
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 89 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDI-GLPNDAIESLKKFVVLDTT-SAEAYYILGSANFMIDEK 89 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHcCCH
Confidence 44445566677776666543 22211111 1122344 5556665554 1221 223344445555555555
Q ss_pred HHHHHHHHh
Q 000992 1007 EDAATTYFC 1015 (1196)
Q Consensus 1007 ~eAa~~y~~ 1015 (1196)
++|...|.+
T Consensus 90 ~~a~~~~~~ 98 (184)
T 3vtx_A 90 QAAIDALQR 98 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 338
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.039 Score=64.97 Aligned_cols=163 Identities=9% Similarity=-0.061 Sum_probs=106.5
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc---CCCcHHHH----HHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM---GDSYHADC----LNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~---g~~~~~~a----le~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1196)
...+.+....|+|++|+..|.++ .+. ..+ -..+... +.|++|++.+ .+|. ...++...|..+..
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADR-NDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTS-SCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHC-CCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHH
Confidence 34456667789999999988765 232 111 1223455 6777777776 2332 34467788888999
Q ss_pred ccCHHHHHHHHHhCC-----C---HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000992 1003 VKCFEDAATTYFCCS-----S---LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ag-----~---~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1196)
.+++++|...|.++- + +-....+|...|+|++|+....+. ...+.. ......+|..+...|++.+|...|
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA-PEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998762 1 223345667778888888665542 111111 246677889999999999999988
Q ss_pred HHhcC-------------CHHHHHHHHHH---hcCHHHHHHHHHh
Q 000992 1074 LDYCG-------------DVTNGISLLID---ARDWEEALRVAFM 1102 (1196)
Q Consensus 1074 ~~yl~-------------d~~~Ai~~y~~---~~~w~eA~rla~~ 1102 (1196)
.+.+. -.-....+|.+ .++|++|+....+
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 77432 12344566777 8889999876543
No 339
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.19 E-value=0.31 Score=60.83 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=58.7
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC------CCcEEEEEC
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS------SGLLLLHSV 104 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~------dG~I~lw~~ 104 (1196)
.++.||+++.++.++.+|. .+++..|+....+... .... ....++ .++ .+.++.. +|.|.-+|.
T Consensus 116 ~~~~v~v~~~dg~l~alD~--~tG~~~W~~~~~~~~~-~~~~-~~~P~v-----~~~-~v~vg~~~~~~~~~g~v~a~D~ 185 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDA--KTGKAIWSQQTTDPAK-PYSI-TGAPRV-----VKG-KVIIGNGGAEYGVRGFVSAYDA 185 (668)
T ss_dssp EBTEEEEECTTSEEEEEET--TTCCEEEEEECSCTTS-SCBC-CSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEET
T ss_pred ECCEEEEEcCCCEEEEEEC--CCCCEeeeeccCCCCC-ccee-cCCCEE-----ECC-EEEEeCCCCCcCCCCEEEEEEC
Confidence 3678999998999999999 7787777764211100 0000 011111 133 4444443 588999999
Q ss_pred CCCeEE-Ee---eeec---------------------------Cc-EEEEEECCCCCEEEEEeCCce
Q 000992 105 DGNATE-VV---GRVE---------------------------GG-VRFISPSPDGDLLGVTTGFGQ 139 (1196)
Q Consensus 105 ~~~~~e-~v---g~~~---------------------------~~-I~~~awSPDg~~LA~~s~d~t 139 (1196)
.++++. .. +... +. ...++++|++.++.++++++.
T Consensus 186 ~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 186 DTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred CCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 887653 11 1000 01 124788999999999988764
No 340
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.18 E-value=0.062 Score=59.74 Aligned_cols=133 Identities=8% Similarity=-0.047 Sum_probs=72.1
Q ss_pred hhCHHHHHHHHHHc----CCCcH---HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHH
Q 000992 944 LQRFENALKHIVSM----GDSYH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAAT 1011 (1196)
Q Consensus 944 L~ry~~Al~~l~~~----g~~~~---~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~ 1011 (1196)
++++++|...|.++ .++.. .....+.... +.|++|.++| .+|.....++..||..+...+++++|..
T Consensus 77 ~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHH
Confidence 34456666665543 12211 1223344555 6667776666 2333222378888999988999999988
Q ss_pred HHHhCCCH---------HHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 1012 TYFCCSSL---------EKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 1012 ~y~~ag~~---------~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
.|.++-.. ..|.-.+...|++++|..+-.+. ...++. ..+...++..+...|++.+|..+|.+.+.
T Consensus 156 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88875321 11111111245555554333221 000111 34566777777777888888777776443
No 341
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.18 E-value=0.38 Score=48.62 Aligned_cols=58 Identities=22% Similarity=0.084 Sum_probs=30.2
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
+.+|...|++++|++.+. +++.++...+ ++.........+|..+...|++.+|.+.+.
T Consensus 114 g~~~~~~g~~~~A~~~~~------~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYE------KSLVYAQQAD-DQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHTCHHHHHHHHH------HHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH------HHHHHHHhcc-chHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 445555566666666653 3444454433 222223344556666666666666655533
No 342
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.17 E-value=0.44 Score=54.44 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=36.9
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEee-------eecCcEEEEEECCC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVG-------RVEGGVRFISPSPD 127 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg-------~~~~~I~~~awSPD 127 (1196)
..+++|+|.|||+.|.++...|.|.+++.++...+.+. .-.++...++|+||
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence 36899999999993445667899999987653211111 11457899999996
No 343
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.11 E-value=0.0057 Score=69.29 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....++..+...|++.+|...|.+
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444445555555444444
No 344
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.11 E-value=0.15 Score=58.23 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=42.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee-------ecCcEEEEEECCC----CCEEEE
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR-------VEGGVRFISPSPD----GDLLGV 133 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~-------~~~~I~~~awSPD----g~~LA~ 133 (1196)
..+++|+|.|||..+++--..|.|++++.++++...+.. -.++...++++|| |.+-++
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 478999999999876655448999999877665543321 1467999999996 555444
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.07 E-value=0.39 Score=53.77 Aligned_cols=197 Identities=11% Similarity=0.113 Sum_probs=113.4
Q ss_pred cCCCEEEEEe--CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC-----------
Q 000992 30 IEQNRLFFAS--SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS----------- 96 (1196)
Q Consensus 30 ~~~~~l~~~s--~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d----------- 96 (1196)
.+++.||+.+ +++.||..+.. ..+. .++. . +.+ --++|+|+.|.-+...
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~d--g~~~-~~l~---~----------~~~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~ 84 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNID--GSNI-HKLS---N----------DTA--MYINADKNYVYYVRNNNQKITSQTFFS 84 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETT--SCSC-EEEE---E----------EEE--EEEEECSSEEEEEEECC------CCSS
T ss_pred EeCCEEEEEeCCCCceEEEEcCC--CCCC-EEcc---C----------Cce--eeEEEcCCEEEEEECCCCcccccceec
Confidence 5788899985 36679999873 2221 1222 1 122 2348899988877543
Q ss_pred ---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe----CCceEEEEeccCceeeeeecccccCccccccCcc
Q 000992 97 ---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT----GFGQILVMTHDWDLLYENPLEELAEGFDVHEPEL 169 (1196)
Q Consensus 97 ---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s----~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf 169 (1196)
+.|...+.+++..+.+.. . .+..|||+|+.|+.+. +...|..|+.++.... .+...
T Consensus 85 ~n~~~Iy~i~~dg~~~~~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~--~lt~~----------- 147 (302)
T 3s25_A 85 YDRNSLCRIKRNGHGSTVLDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK--KIKNH----------- 147 (302)
T ss_dssp CCSEEEEEEETTSCCCEEEEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE--EEESS-----------
T ss_pred cCCCeEEEEeCCCCcceEeec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE--EEeCC-----------
Confidence 468888888876544432 1 2237999999999986 3445655554432211 11111
Q ss_pred ccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCC
Q 000992 170 SSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1196)
Q Consensus 170 ~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~ 249 (1196)
.+ .+|+|+|+.|..++. +..+|.+-+.+.+.....++ +.. ...+.|+|.+|+-+.... .
T Consensus 148 -----~~--~~~~~~g~~iy~t~~------g~~~Iy~~~l~g~~~~~l~~---~~~-~~~~~P~g~~iy~t~~~~----~ 206 (302)
T 3s25_A 148 -----YL--FTCNTSDRYFYYNNP------KNGQLYRYDTASQSEALFYD---CNC-YKPVVLDDTNVYYMDVNR----D 206 (302)
T ss_dssp -----CC--CCSEEETTEEEEECT------TTCCEEEEETTTTEEEEEEC---SCE-EEEEEEETTEEEEEEGGG----T
T ss_pred -----Cc--eEeeEECCEEEEEeC------CCceEEEEECCCCCEEEEeC---CCc-cceeeecCCEEEEEEcCC----C
Confidence 11 456778888874332 34678888884443333333 222 234669999999876532 1
Q ss_pred CeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000992 250 PSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 250 ~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs 289 (1196)
..|..-+.+|.... .|. +..+ ..|+|+|+.|.-
T Consensus 207 ~~I~~~~ldG~~~~--~Lt---~~~~--~~~~~~g~~Iy~ 239 (302)
T 3s25_A 207 NAIVHVNINNPNPV--VLT---EANI--EHYNVYGSLIFY 239 (302)
T ss_dssp TEEEEECSSSCCCE--ECS---CSCE--EEEEEETTEEEE
T ss_pred cEEEEEECCCCCeE--EEe---CCCc--ceEEECCCEEEE
Confidence 35655556664332 222 1223 347888887743
No 346
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.01 E-value=0.19 Score=61.78 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=53.3
Q ss_pred eEEeeecCCCEEEEEeC--------------------C----CcEEEEecccccccccceeeccccccccccCCCCCCEE
Q 000992 24 QFSALDIEQNRLFFASS--------------------A----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSIT 79 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~--------------------~----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 79 (1196)
...++|++.+.||+++. + +.|+.+|. .+++..|.....+.+.- ++.....+.
T Consensus 249 ~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~--~TG~~~W~~q~~~~d~w--d~~~~~~p~ 324 (582)
T 1flg_A 249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP--SSGEVKWFYQHTPNDAW--DFSGNNELV 324 (582)
T ss_dssp SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT--TTCCEEEEEESSTTCCS--CCCCCCCCE
T ss_pred CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC--CCCCEEEEEeCCCCCcc--cccCCCCcE
Confidence 34689999999999874 2 46999999 78887777653221100 010001222
Q ss_pred EEEEc-cCCC---EEEEEECCCcEEEEECCCCeE
Q 000992 80 AFDYL-MEKE---ALIVGTSSGLLLLHSVDGNAT 109 (1196)
Q Consensus 80 ~v~~s-pd~~---~La~as~dG~I~lw~~~~~~~ 109 (1196)
-+... .+|+ .++.++.+|.+..+|..++++
T Consensus 325 l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 325 LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EEeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 22332 5774 778899999999999988765
No 347
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.01 E-value=0.95 Score=51.09 Aligned_cols=214 Identities=9% Similarity=-0.030 Sum_probs=128.0
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEE---ccCCCEEEEEEC--
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDY---LMEKEALIVGTS-- 95 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~---spd~~~La~as~-- 95 (1196)
...+..||...+.+|+.+- .+.|..|+. ..+.. ..+ .+| ++. ++-.+.-.+.+|.| -|+++.++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~--~~~~~-~~~-~~~-~~s-~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNP--KTQSH-FNV-VID-GAS-SNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECT--TTCCE-EEE-CCT-TTC-CSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcC--CCCeE-EEE-ecC-Ccc-ccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 5678999999999999985 788999998 43322 122 111 111 00111224689999 489888776432
Q ss_pred -----------CCcEEEEECC---CCeE-EEee--ee-----------cCcEEEEEECCCCCEEEEEeCC-ceEEEEecc
Q 000992 96 -----------SGLLLLHSVD---GNAT-EVVG--RV-----------EGGVRFISPSPDGDLLGVTTGF-GQILVMTHD 146 (1196)
Q Consensus 96 -----------dG~I~lw~~~---~~~~-e~vg--~~-----------~~~I~~~awSPDg~~LA~~s~d-~tV~l~~~~ 146 (1196)
+.-|..+|+. +++. ..+. .+ ..+...++..|+|+.-++.+.. +.|...+.+
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 4568889988 5433 2221 11 1258899999999999988877 788776766
Q ss_pred CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE--EEEe-cc---
Q 000992 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL--QASS-EL--- 220 (1196)
Q Consensus 147 ~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l--~~~~-e~--- 220 (1196)
+..+....+.... ....-+...|++.|||+.|+ +.. + .+.+..+|..+-.. .... ++
T Consensus 168 G~~~~~~~~~~~~----------~~~~~G~nGIv~~pdg~~Li-v~~-----~-~g~L~~fD~~~pv~~~v~~~~~G~~~ 230 (334)
T 2p9w_A 168 GKTVSTFAWESGN----------GGQRPGYSGITFDPHSNKLI-AFG-----G-PRALTAFDVSKPYAWPEPVKINGDFG 230 (334)
T ss_dssp SCCEEEEEECCCC----------SSSCCSCSEEEEETTTTEEE-EES-----S-SSSEEEEECSSSSCCCEECEESSCCC
T ss_pred CCEEeeeeecCCC----------cccccCcceEEEeCCCCEEE-EEc-----C-CCeEEEEcCCCCcceeecccccCCcc
Confidence 6533322111100 01112356899999999888 554 2 46777788742211 1111 01
Q ss_pred -CCCceeE-EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEE
Q 000992 221 -KAFMGAV-LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1196)
Q Consensus 221 -~~~~v~s-lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~ 264 (1196)
..+. .. ++-.-+|+.+..+..- ...+++...+|++..+
T Consensus 231 ~~~~~-dgilp~~~~G~vllV~~~~-----~~~~~l~S~DgW~sa~ 270 (334)
T 2p9w_A 231 TLSGT-EKIVTVPVGNESVLVGARA-----PYAISFRSWDNWKSAN 270 (334)
T ss_dssp CCTTE-EEEEEEEETTEEEEEEEET-----TEEEEEECSSTTSEEE
T ss_pred cccCc-ccccccccCCEEEEEEcCC-----CCEEEEECCCCcceeE
Confidence 1111 33 4556688886665542 2357778888876544
No 348
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.93 E-value=0.22 Score=59.62 Aligned_cols=157 Identities=7% Similarity=-0.012 Sum_probs=91.9
Q ss_pred CCEEEEEEcc-CCCEEEEEE-CCCcEEEEECCCCeEEEeeeec----CcEEEEEE-------CCCCCEEEEEeCCc----
Q 000992 76 DSITAFDYLM-EKEALIVGT-SSGLLLLHSVDGNATEVVGRVE----GGVRFISP-------SPDGDLLGVTTGFG---- 138 (1196)
Q Consensus 76 ~~v~~v~~sp-d~~~La~as-~dG~I~lw~~~~~~~e~vg~~~----~~I~~~aw-------SPDg~~LA~~s~d~---- 138 (1196)
..+..|+|.| +...|.++. ..+.|+++|..++.+..+.... .....++| ++||++|.++...+
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 3588999999 355555444 4467889999998877543321 24899999 99999777775543
Q ss_pred ---eEEEEeccC--ceee---eeecccccCccccccCccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEEC
Q 000992 139 ---QILVMTHDW--DLLY---ENPLEELAEGFDVHEPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWER 209 (1196)
Q Consensus 139 ---tV~l~~~~~--d~~~---~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~ 209 (1196)
.|.+.++.- .... ...+.. + ..-..++..|+ |.+++ +.. ..+.|..+|.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-----------~----~~p~giavdp~~g~LYv-td~------~~g~V~r~d~ 276 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-----------Y----KQCNGATIHPINGELYF-NSY------EKGQVFRLDL 276 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-----------E----SCCCCEEECTTTCCEEE-EET------TTTEEEEECH
T ss_pred cCceEEEEecCCCCceeecccceeecc-----------C----CCceEEEEcCCCCeEEE-EEC------CCCEEEEEec
Confidence 244443321 1100 000000 0 12246788995 44444 332 3578999998
Q ss_pred C-------CCcE-----------E-E-EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 210 D-------SGTL-----------Q-A-SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 210 ~-------~G~l-----------~-~-~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
. +|.+ . . ...+..++...|+|+|+|+.|-.+... .+.|+-++.+|
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~-----~h~I~kid~dg 341 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN-----NHYFMRSDYDE 341 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT-----TTEEEEEEEET
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC-----CCEEEEEecCC
Confidence 5 5554 1 1 112233455789999999965544332 35777665544
No 349
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.93 E-value=0.82 Score=51.94 Aligned_cols=79 Identities=8% Similarity=-0.006 Sum_probs=45.8
Q ss_pred ccHHHHhhCHHHHHHHHHHc-------CCCcHHHHH------HHHHHHhcChHHHHhhc----------CCcHHHHHHHH
Q 000992 938 YTIDLRLQRFENALKHIVSM-------GDSYHADCL------NLMKKYAQLFPLGLKLI----------TDPAKMEQVLE 994 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~-------g~~~~~~al------e~~~~~~~ly~~AL~L~----------~d~~~~~~i~~ 994 (1196)
+.+..++|+|++|+.++.++ +......+. ..+... +.|++|++.+ .++.....++.
T Consensus 148 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 226 (378)
T 3q15_A 148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF-KHYDKALPHLEAALELAMDIQNDRFIAISLL 226 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45556677777777766654 110111111 112344 5555555544 24445556777
Q ss_pred HHHHHHhcccCHHHHHHHHHhCC
Q 000992 995 AWADHLSDVKCFEDAATTYFCCS 1017 (1196)
Q Consensus 995 ~~A~~L~~~~~~~eAa~~y~~ag 1017 (1196)
..|.-+...++|++|...|.++-
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888887663
No 350
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.86 E-value=0.041 Score=65.41 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHhCC--------CHHHHHHHHHHcCCHHHHHHHHhhc-CCCHHH-----HHHHHHHHH
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGLL-KLGKDE-----VAKLAQELC 1057 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~ag--------~~~kAl~~y~~~g~w~~al~la~~l-~~~~~~-----~~~l~~~la 1057 (1196)
++..+|..+...+++++|..+|.++- -+.....+|...|+|++|+....+. ...+.. .......+|
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 44455566666666666666555431 1122234455555555555433321 000000 001123344
Q ss_pred HHHHHc----------CChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHH
Q 000992 1058 EELQAL----------GKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1058 ~~L~~~----------~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
..+... |++.+|...|.+.+. + ...-..+|.+.+++++|+....
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 555555 677777766665331 1 1233455666777777765443
No 351
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.83 E-value=2.7 Score=51.23 Aligned_cols=69 Identities=6% Similarity=0.044 Sum_probs=42.1
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC------CCcEEEEEC
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS------SGLLLLHSV 104 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~------dG~I~lw~~ 104 (1196)
.++.||+++.++.++.+|. .+++..|+... ...-....+. ...++ .++ .+.+++. +|.|.-+|.
T Consensus 114 ~~~~v~v~~~dg~l~alD~--~tG~~~W~~~~-~~~~~~~~~~-~~P~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~ 183 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDA--KTGKINWEVEV-CDPKVGSTLT-QAPFV-----AKD-TVLMGCSGAELGVRGAVNAFDL 183 (571)
T ss_dssp ETTEEEEECTTSEEEEEET--TTCCEEEEEEC-CCGGGTCBCC-SCCEE-----ETT-EEEEECBCGGGTCCCEEEEEET
T ss_pred ECCEEEEEeCCCEEEEEEC--CCCCEEEEecC-CCCCccceec-cCCEE-----ECC-EEEEEecCCccCCCCEEEEEEC
Confidence 4788999999999999999 77777676541 1100000110 11111 133 4555554 789999999
Q ss_pred CCCeE
Q 000992 105 DGNAT 109 (1196)
Q Consensus 105 ~~~~~ 109 (1196)
.+++.
T Consensus 184 ~tG~~ 188 (571)
T 2ad6_A 184 KTGEL 188 (571)
T ss_dssp TTCCE
T ss_pred CCCcE
Confidence 88765
No 352
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.82 E-value=0.034 Score=59.60 Aligned_cols=81 Identities=12% Similarity=-0.027 Sum_probs=46.4
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcCC-----Cc----HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHH
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMGD-----SY----HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHL 1000 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g~-----~~----~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L 1000 (1196)
...+.+...+|+|++|+..+.++-. +. .-..-..+... +.|++|++.+ .+|. ...++..+|..+
T Consensus 41 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 118 (272)
T 3u4t_A 41 NRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK-GQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHH
Confidence 3445566678888888887776521 11 11112233555 6677777766 2332 224556666666
Q ss_pred hcccCHHHHHHHHHhCC
Q 000992 1001 SDVKCFEDAATTYFCCS 1017 (1196)
Q Consensus 1001 ~~~~~~~eAa~~y~~ag 1017 (1196)
...++|++|...|.++-
T Consensus 119 ~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHTTCHHHHHHHHGGGC
T ss_pred HHccCHHHHHHHHHHHh
Confidence 66777777766666653
No 353
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.79 E-value=1.4 Score=49.95 Aligned_cols=174 Identities=9% Similarity=0.052 Sum_probs=85.7
Q ss_pred CCEEEEEECCCcEEEEECCCCeEE-E--eeeecC-----cEEEEEECC--CCCEEEEEeCCceEEEEec-cCceeeeeec
Q 000992 87 KEALIVGTSSGLLLLHSVDGNATE-V--VGRVEG-----GVRFISPSP--DGDLLGVTTGFGQILVMTH-DWDLLYENPL 155 (1196)
Q Consensus 87 ~~~La~as~dG~I~lw~~~~~~~e-~--vg~~~~-----~I~~~awSP--Dg~~LA~~s~d~tV~l~~~-~~d~~~~~~l 155 (1196)
+..+.+++.+|.|..+|..+++.. . .+...+ .+..+.-+| ++..|.+++.++.|..++. +++.+-....
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~ 267 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL 267 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC
Confidence 345667777888888888776543 1 111000 000011112 2456666666777766552 2332211111
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC-CceeEEEEcCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSG 234 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~-~~v~slawsPdG 234 (1196)
.....+... ++..++ ++ .++.+..+|..+|+.....+... ....+... .+
T Consensus 268 ------------------~~~~~~~~~-~~~l~~--~~------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~ 318 (376)
T 3q7m_A 268 ------------------GSVNDFIVD-GNRIYL--VD------QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YN 318 (376)
T ss_dssp ------------------CCEEEEEEE-TTEEEE--EE------TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ET
T ss_pred ------------------CCCCCceEE-CCEEEE--Ec------CCCeEEEEECCCCcEEEeecccCCCcccCCEE--EC
Confidence 112333333 444444 33 24689999998999887765221 22222222 24
Q ss_pred CeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEE-EEEccCCCeeEEEEccCCcceEEEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVEL-LKWNCMSDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~-laWSpDg~~LAs~~~d~~~~~V~lW~ 303 (1196)
..|..++.+ ..|..++ .+|.....+.+.. ..+.. ... .+..|.+++.++ .|..|+
T Consensus 319 ~~l~v~~~~------g~l~~~d~~tG~~~~~~~~~~---~~~~~~~~~--~~~~l~v~~~~G---~l~~~~ 375 (376)
T 3q7m_A 319 GNLVVGDSE------GYLHWINVEDGRFVAQQKVDS---SGFQTEPVA--ADGKLLIQAKDG---TVYSIT 375 (376)
T ss_dssp TEEEEECTT------SEEEEEETTTCCEEEEEECCT---TCBCSCCEE--ETTEEEEEBTTS---CEEEEE
T ss_pred CEEEEEeCC------CeEEEEECCCCcEEEEEecCC---CcceeCCEE--ECCEEEEEeCCC---EEEEEe
Confidence 556556553 4688888 5676555444321 11111 111 234566666666 566664
No 354
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.77 E-value=0.088 Score=56.28 Aligned_cols=140 Identities=11% Similarity=0.047 Sum_probs=88.2
Q ss_pred hhhcccHHHHhhCHHHHHHHHHHc---CCC----cHHHHHHHHHHHhcChHHHHhhc-------CCcHHHHHHHHHHHHH
Q 000992 934 LLMRYTIDLRLQRFENALKHIVSM---GDS----YHADCLNLMKKYAQLFPLGLKLI-------TDPAKMEQVLEAWADH 999 (1196)
Q Consensus 934 ~~~r~~Id~~L~ry~~Al~~l~~~---g~~----~~~~ale~~~~~~~ly~~AL~L~-------~d~~~~~~i~~~~A~~ 999 (1196)
.++.+.+....|+|++|+..|.++ .+. ....+. ..... +.|++|++.+ .++......+..+|..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAV-CYYEL-AKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHH-HHHHT-TCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHH-hhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344556666677888888887764 111 123333 44556 7777777776 2333445567788888
Q ss_pred HhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHH
Q 000992 1000 LSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAA 1070 (1196)
Q Consensus 1000 L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa 1070 (1196)
+...+++++|...|.++-. +.....+|...|+|++|+....+. ...+.. ......+|..+...+++.+|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-PKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887632 223346777888888888766542 222222 235556663444456888888
Q ss_pred HHHHHh
Q 000992 1071 KIALDY 1076 (1196)
Q Consensus 1071 ~i~~~y 1076 (1196)
..|.+.
T Consensus 163 ~~~~~a 168 (272)
T 3u4t_A 163 SSFVKV 168 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877663
No 355
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=95.77 E-value=0.67 Score=50.74 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=35.0
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+.+|...|++++|++.| ++|+.++...+.+......++..+|..+...|+|.+|...+.+
T Consensus 162 g~~y~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLF------EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHTTCHHHHHHHH------HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH------HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555556666666655 3344455554334444455667777777777777777666443
No 356
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.70 E-value=0.29 Score=46.76 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.....+|..+...|++.+|...+.+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~ 114 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLK 114 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445556666666666666555443
No 357
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.015 Score=68.73 Aligned_cols=112 Identities=9% Similarity=-0.128 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHhCC----C---HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHH
Q 000992 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCS----S---LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEE 1059 (1196)
Q Consensus 988 ~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag----~---~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~ 1059 (1196)
....++...|..+...++|++|...|.++- + +-....+|...|++++|+....+. ...+.. ......++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~ 313 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN-SSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC-THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC-HHHHHHHHHH
Confidence 345566677777777777777777776641 1 112234555556666555443321 111111 2345566666
Q ss_pred HHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHH
Q 000992 1060 LQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1060 L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla 1100 (1196)
+...|++.+|...|.+.+. + .-....+|.+.++|++|+...
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6677777777776665321 1 122334455556666665543
No 358
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.64 E-value=3.6 Score=46.73 Aligned_cols=106 Identities=6% Similarity=-0.071 Sum_probs=58.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC---CCEEEEEEC---
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME---KEALIVGTS--- 95 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd---~~~La~as~--- 95 (1196)
.+.++++++++..||++...+.|+.++. ..+.. ..+.+++. ......+.+..|+++|| +..|.++..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~--~g~~~-~~~~~~~~----v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~ 91 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQA--GKGLS-APLSGVPD----VWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG 91 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEET--TTEEC-CCCBSCCC----CCCSTTCSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeC--CCcee-eEecCCcc----cccCCCCCceeEEECCCCCCCCEEEEEEeCCC
Confidence 6788999999875777777788888875 22211 01221110 00111357899999997 555554432
Q ss_pred -----CCcEEEEECCCC--eE---E-Eeeeec------CcEEEEEECCCCCEEEEE
Q 000992 96 -----SGLLLLHSVDGN--AT---E-VVGRVE------GGVRFISPSPDGDLLGVT 134 (1196)
Q Consensus 96 -----dG~I~lw~~~~~--~~---e-~vg~~~------~~I~~~awSPDg~~LA~~ 134 (1196)
...|.-++.+.+ .+ + ++.... ..-..++|+|||.+.++.
T Consensus 92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 224655665432 22 2 211111 113579999999655554
No 359
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=95.62 E-value=0.23 Score=53.71 Aligned_cols=26 Identities=27% Similarity=0.070 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
......+|..+...|++.+|...|.+
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566677777777777777777655
No 360
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.61 E-value=0.28 Score=58.23 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=40.8
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee---------ecCcEEEEEECCC----CCEEEEEe
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR---------VEGGVRFISPSPD----GDLLGVTT 135 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~---------~~~~I~~~awSPD----g~~LA~~s 135 (1196)
..+++|+|.|||+.+++-...|.|++++..++..+.+.. -++++..++|+|| |.+-++-+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 468999999999977664444579999876555442211 1467889999995 44444443
No 361
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.61 E-value=0.013 Score=61.91 Aligned_cols=52 Identities=25% Similarity=0.199 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----CHH---HHHHHHHHhcCHHHHHHHHHh
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCG----DVT---NGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~~---~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
+....+|..+...|++.+|...|.+.+. +.+ .-..+|.+.+++++|+....+
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4556777777788888888877776432 221 223455566777777655443
No 362
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.61 E-value=0.39 Score=59.03 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=54.4
Q ss_pred EEeeecCCCEEEEEeCC----------------CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEc-cCC
Q 000992 25 FSALDIEQNRLFFASSA----------------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYL-MEK 87 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~s-pd~ 87 (1196)
..++|++.+.||+++.+ +.|+.+|. .+++..|...+.+.+.- ++.....+.-+... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~--~TG~~~W~~q~~~~d~w--d~d~~~~p~l~d~~~~~G 320 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDA--DTGEAKFGYQKTPHDEW--DYAGVNVMMLSEQKDKDG 320 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEET--TTCCEEEEEESSTTCSS--CCCCCCCCEEEEEECTTS
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeC--CCCceeeEeecCCCccc--cccCCCccEEEeccccCC
Confidence 46899999999999765 36999999 77887777654332210 11111122223333 578
Q ss_pred ---CEEEEEECCCcEEEEECCCCeE
Q 000992 88 ---EALIVGTSSGLLLLHSVDGNAT 109 (1196)
Q Consensus 88 ---~~La~as~dG~I~lw~~~~~~~ 109 (1196)
..++.++.+|.+..+|..++++
T Consensus 321 ~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 321 KARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp CEEEEEEEECTTSEEEEEETTTCCE
T ss_pred cEEEEEEEECCCcEEEEEECCCCCE
Confidence 5677789999999999988765
No 363
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.59 E-value=0.55 Score=52.99 Aligned_cols=163 Identities=9% Similarity=0.036 Sum_probs=94.0
Q ss_pred CEEEEEEccCCCEEE-EEECCCcEEEEECCCCeEEEeeeecC---------cEEEEEE---CCCCCEEEEEe--------
Q 000992 77 SITAFDYLMEKEALI-VGTSSGLLLLHSVDGNATEVVGRVEG---------GVRFISP---SPDGDLLGVTT-------- 135 (1196)
Q Consensus 77 ~v~~v~~spd~~~La-~as~dG~I~lw~~~~~~~e~vg~~~~---------~I~~~aw---SPDg~~LA~~s-------- 135 (1196)
..-++.|.+....|. +....|+|..|++.++..+.+ ..++ .+..+.| -|+|.+++++.
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 455788988555554 444799999999987655433 2222 3689999 79988888644
Q ss_pred -----CCceEEEEecc----CceeeeeecccccCc-cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCC-CEE
Q 000992 136 -----GFGQILVMTHD----WDLLYENPLEELAEG-FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLH-KRL 204 (1196)
Q Consensus 136 -----~d~tV~l~~~~----~d~~~~~~l~~~~~~-~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d-~~i 204 (1196)
++..|..++.. +..+.-..+...... +..+. ........++--++|+..+ +.+. . ..|
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g----~~~~~~nDvavD~~GnaYV-t~s~------~~~~I 161 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAG----KRPFGVVQSAQDRDGNSYV-AFAL------GMPAI 161 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHS----SCCEEEEEEEECTTSCEEE-EEEE------SSCEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccc----ccccCCceeEECCCCCEEE-eCCC------CCCeE
Confidence 24556555532 444333332211100 00000 0012357899999999887 4542 2 455
Q ss_pred EEEECCCCcEEEEe--ccC----CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 205 KVWERDSGTLQASS--ELK----AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 205 rVWd~~~G~l~~~~--e~~----~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
-..++ +|+....+ +.. ..-...|++.|+|++|...... ..+.-|+.+
T Consensus 162 ~rV~p-dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~------g~L~~fD~~ 214 (334)
T 2p9w_A 162 ARVSA-DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGP------RALTAFDVS 214 (334)
T ss_dssp EEECT-TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSS------SSEEEEECS
T ss_pred EEEeC-CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCC------CeEEEEcCC
Confidence 56677 66644432 110 1113689999999988776542 346666654
No 364
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.52 E-value=0.94 Score=50.61 Aligned_cols=180 Identities=7% Similarity=0.008 Sum_probs=103.2
Q ss_pred EeeecCCCEEEEEeCC--------------CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEE
Q 000992 26 SALDIEQNRLFFASSA--------------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI 91 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s~~--------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La 91 (1196)
.-+.++++.||.++.. ..|+..++ ...+. .. |.. +. +..|+|+++.|+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~--dg~~~-~~-------l~~------~~--~~~~s~~g~~Iy 119 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR--NGHGS-TV-------LDP------DP--CIYASLIGNYIY 119 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEET--TSCCC-EE-------EEC------SC--EEEEEEETTEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC--CCCcc-eE-------eec------CC--ccEEEEeCCEEE
Confidence 4467899999999653 35788777 33322 11 111 11 236789999999
Q ss_pred EEE----CCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-CceEEEEeccCceeeeeecccccCcccccc
Q 000992 92 VGT----SSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 92 ~as----~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
.+. .+..|...+.++...+.+-.+ .+ .+|+|+|+.|...+. ..+|..+..+..... .+...
T Consensus 120 ~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--~l~~~-------- 185 (302)
T 3s25_A 120 YLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--LFYDC-------- 185 (302)
T ss_dssp EEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEE--EEECS--------
T ss_pred EEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEE--EEeCC--------
Confidence 876 344566677777555533322 22 568999999998875 567877764433211 11111
Q ss_pred CccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCC
Q 000992 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 167 tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
. ..+.+.|+|.+++. +... ....|..-+. +|.-...+. +... ..|+|+|++|..++...
T Consensus 186 --------~-~~~~~~P~g~~iy~-t~~~----~~~~I~~~~l-dG~~~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~-- 244 (302)
T 3s25_A 186 --------N-CYKPVVLDDTNVYY-MDVN----RDNAIVHVNI-NNPNPVVLT--EANI--EHYNVYGSLIFYQRGGD-- 244 (302)
T ss_dssp --------C-EEEEEEEETTEEEE-EEGG----GTTEEEEECS-SSCCCEECS--CSCE--EEEEEETTEEEEEECSS--
T ss_pred --------C-ccceeeecCCEEEE-EEcC----CCcEEEEEEC-CCCCeEEEe--CCCc--ceEEECCCEEEEEECCC--
Confidence 1 12345699999984 3321 1235555566 443333322 1222 45899999997664321
Q ss_pred CCCCeEEEEeCCCe
Q 000992 247 NKCPSIVFYERNGL 260 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl 260 (1196)
...|..-+.+|.
T Consensus 245 --~~~i~~~~~DG~ 256 (302)
T 3s25_A 245 --NPALCVVKNDGT 256 (302)
T ss_dssp --SCEEEEEETTSC
T ss_pred --CcEEEEEECCCC
Confidence 245655566664
No 365
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=95.50 E-value=4.2 Score=45.50 Aligned_cols=161 Identities=11% Similarity=0.004 Sum_probs=97.1
Q ss_pred CEEEEEEccCCCEEEEE-ECCCcEEEEECCCCeE--EEeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCceeee
Q 000992 77 SITAFDYLMEKEALIVG-TSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~a-s~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d~~~~ 152 (1196)
.+.+++|.+.++.|..+ ...+.|..++.+++.. .++..--.....+++.|.+..|-.+ +..+.|.+.+.+......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 57899999976666544 5667888899887532 1222112346678888865555444 456678776655432211
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slaws 231 (1196)
. .... -..-..|+..|++.++. ++.. .....|...+. +|....+. ...-..-..|+|+
T Consensus 116 l-~~~~--------------~~~P~giavdp~~g~ly-~td~----~~~~~I~r~~~-dG~~~~~~~~~~l~~Pnglavd 174 (318)
T 3sov_A 116 L-FWQE--------------LDQPRAIALDPSSGFMY-WTDW----GEVPKIERAGM-DGSSRFIIINSEIYWPNGLTLD 174 (318)
T ss_dssp E-ECSS--------------CSSEEEEEEEGGGTEEE-EEEC----SSSCEEEEEET-TSCSCEEEECSSCSCEEEEEEE
T ss_pred E-EeCC--------------CCCccEEEEeCCCCEEE-EEec----CCCCEEEEEEc-CCCCeEEEEECCCCCccEEEEe
Confidence 1 1000 12336889998655444 3321 12467888898 77544433 2222345899999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1196)
|++..|-.+... ...|..++.+|....
T Consensus 175 ~~~~~lY~aD~~-----~~~I~~~d~dG~~~~ 201 (318)
T 3sov_A 175 YEEQKLYWADAK-----LNFIHKSNLDGTNRQ 201 (318)
T ss_dssp TTTTEEEEEETT-----TTEEEEEETTSCSCE
T ss_pred ccCCEEEEEECC-----CCEEEEEcCCCCceE
Confidence 988888776543 367888888875443
No 366
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.44 E-value=0.68 Score=55.44 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 000992 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP 1066 (1196)
Q Consensus 987 ~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~ 1066 (1196)
......+..+|.-+..+|+|++|..+|++ |++.+.+ .++.+.-++...+..||..+..+|+|
T Consensus 348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~------aL~i~~~------------~lG~~Hp~~a~~l~nLa~~~~~~G~~ 409 (490)
T 3n71_A 348 LYVLRLLSIASEVLSYLQAYEEASHYARR------MVDGYMK------------LYHHNNAQLGMAVMRAGLTNWHAGHI 409 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHH------------HSCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHH------HHHHHHH------------HcCCCCHHHHHHHHHHHHHHHHCCCH
Confidence 34666777777777777777777777753 5555432 22333335556777888888889999
Q ss_pred HHHHHHHHH
Q 000992 1067 GEAAKIALD 1075 (1196)
Q Consensus 1067 ~eAa~i~~~ 1075 (1196)
++|..+|.+
T Consensus 410 ~eA~~~~~~ 418 (490)
T 3n71_A 410 EVGHGMICK 418 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988888666
No 367
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.43 E-value=0.14 Score=54.66 Aligned_cols=95 Identities=15% Similarity=-0.012 Sum_probs=54.5
Q ss_pred hhCHHHHHHHHHHcCCC----cHHHH------HHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHH
Q 000992 944 LQRFENALKHIVSMGDS----YHADC------LNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFED 1008 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g~~----~~~~a------le~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~e 1008 (1196)
-++|++|+..|.++-.. ....+ -...... +.|++|++.+ .+|. ...++..+|..+...++|++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL-GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 47788888888765321 11111 1222456 7788888777 2443 23456666777777777777
Q ss_pred HHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHh
Q 000992 1009 AATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAG 1040 (1196)
Q Consensus 1009 Aa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~ 1040 (1196)
|...|.++-. +-....+|...|++++|+....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 7777765521 1122355666666666665443
No 368
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.41 E-value=0.055 Score=68.21 Aligned_cols=74 Identities=11% Similarity=0.141 Sum_probs=34.3
Q ss_pred cHHHHhhCHHHHHHHHHHc---CCCcH----HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCH
Q 000992 939 TIDLRLQRFENALKHIVSM---GDSYH----ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCF 1006 (1196)
Q Consensus 939 ~Id~~L~ry~~Al~~l~~~---g~~~~----~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~ 1006 (1196)
.+...+|+|++|++.|.++ .++.. ..+ ..+.+. +.|++|++.| .+|+ ....+..+|.-|...+++
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg-~~l~~~-g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~~~g~~ 93 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA-SVLQQQ-GKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQDV 93 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH-HHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 4444566666666666543 22211 111 122344 5555555554 2332 223444555555555555
Q ss_pred HHHHHHHHh
Q 000992 1007 EDAATTYFC 1015 (1196)
Q Consensus 1007 ~eAa~~y~~ 1015 (1196)
++|...|.+
T Consensus 94 ~~A~~~~~k 102 (723)
T 4gyw_A 94 QGALQCYTR 102 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 369
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.40 E-value=0.064 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+...|++.+|...+.+
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHH
Confidence 444556666666666666666555
No 370
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.39 E-value=0.039 Score=58.07 Aligned_cols=137 Identities=14% Similarity=0.073 Sum_probs=75.3
Q ss_pred hcccHHHHhhCHHHHHHHHHHc---CCCcH----HHHHHHHHH----------HhcChHHHHhhc-----CCcHHHHHHH
Q 000992 936 MRYTIDLRLQRFENALKHIVSM---GDSYH----ADCLNLMKK----------YAQLFPLGLKLI-----TDPAKMEQVL 993 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~---g~~~~----~~ale~~~~----------~~~ly~~AL~L~-----~d~~~~~~i~ 993 (1196)
..+.+...+|++++|+..|.++ .++.. ..+.-+... . +.|++|++.+ .+|. ...++
T Consensus 44 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~P~-~~~~~ 121 (217)
T 2pl2_A 44 WLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGK-GYLEQALSVLKDAERVNPR-YAPLH 121 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHH-HHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccc-cCHHHHHHHHHHHHHhCcc-cHHHH
Confidence 3456666789999999988764 33321 222222222 1 3467777666 2443 33566
Q ss_pred HHHHHHHhcccCHHHHHHHHHhCCC-------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCC
Q 000992 994 EAWADHLSDVKCFEDAATTYFCCSS-------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGK 1065 (1196)
Q Consensus 994 ~~~A~~L~~~~~~~eAa~~y~~ag~-------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~ 1065 (1196)
..+|.-+...+++++|...|.++-. +-.-..+|...|++++|+....+. ..+++. ......++..+...|+
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD-LDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTC---
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccC
Confidence 7889999999999999999988621 122335677888888887655431 112222 2345566666666666
Q ss_pred hHHHHHHHHH
Q 000992 1066 PGEAAKIALD 1075 (1196)
Q Consensus 1066 ~~eAa~i~~~ 1075 (1196)
+.+|...|.+
T Consensus 201 ~~~A~~~~~~ 210 (217)
T 2pl2_A 201 AEEAARAAAL 210 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 6666555443
No 371
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.39 E-value=3.4 Score=52.41 Aligned_cols=199 Identities=11% Similarity=0.012 Sum_probs=112.3
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I 99 (1196)
.+.+++||..++.||.+.. .+.|+.++++.........+ +.... ...+.+|++.+.++.|..+ +..+.|
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~------vi~~~---l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------VISRD---IQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE------EECSS---CSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE------EEecC---CCCcceeeeeecCCcEEEEecCCCeE
Confidence 6788999999999999865 55688888831100011111 11111 1457788998888666544 567889
Q ss_pred EEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEe-CC-ceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTT-GF-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s-~d-~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.+.++++....++.. .-.....+++.|.+..|-.+. +. +.|...+.++.....+.... -..-
T Consensus 496 ~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~---------------l~~P 560 (791)
T 3m0c_C 496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN---------------IQWP 560 (791)
T ss_dssp EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS---------------CSCE
T ss_pred EEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC---------------CCCc
Confidence 999999876554332 224578999999877666654 33 55665554443222111000 0133
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..|+..+++..|- ++- .....|++.+. +|....+. .....+...++...++..|..+... ...|...
T Consensus 561 ~GLavD~~~~~LY-waD-----~~~~~I~~~d~-dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~-----~~~I~~~ 628 (791)
T 3m0c_C 561 NGITLDLLSGRLY-WVD-----SKLHSISSIDV-NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII-----NEAIFSA 628 (791)
T ss_dssp EEEEEETTTTEEE-EEE-----TTTTEEEEEET-TSCSCEEEEECTTTTSSEEEEEEETTEEEEEETT-----TTEEEEE
T ss_pred eEEEEecCCCeEE-EEe-----CCCCcEEEEec-CCCceEEEecCCCccCCCCEEEEeCCEEEEEECC-----CCEEEEE
Confidence 6799997666554 342 23578999999 66544333 2212222333333355555555443 2456555
Q ss_pred e
Q 000992 256 E 256 (1196)
Q Consensus 256 e 256 (1196)
+
T Consensus 629 d 629 (791)
T 3m0c_C 629 N 629 (791)
T ss_dssp E
T ss_pred e
Confidence 5
No 372
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=95.39 E-value=0.074 Score=63.43 Aligned_cols=127 Identities=13% Similarity=0.036 Sum_probs=82.5
Q ss_pred cCh-HHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH-------HHHHHHHHHc---------CC
Q 000992 974 QLF-PLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-------EKAMKAYRAS---------GN 1031 (1196)
Q Consensus 974 ~ly-~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~-------~kAl~~y~~~---------g~ 1031 (1196)
+.| ++|++.| .+|. ...++..+|.-+...++|++|...|.++-.. .....+|... |+
T Consensus 116 g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~ 194 (474)
T 4abn_A 116 PDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRH 194 (474)
T ss_dssp SSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhh
Confidence 455 5665555 2333 3457778899999999999999999887221 1122445555 77
Q ss_pred HHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHc--------CChHHHHHHHHHhcC-CH---------HHHHHHHHHhcC
Q 000992 1032 WSGVLTVAGLL-KLGKDEVAKLAQELCEELQAL--------GKPGEAAKIALDYCG-DV---------TNGISLLIDARD 1092 (1196)
Q Consensus 1032 w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~--------~~~~eAa~i~~~yl~-d~---------~~Ai~~y~~~~~ 1092 (1196)
|++|+....+. ..+++. ......+|..+... |+|.+|...|.+.+. ++ -....+|.+.++
T Consensus 195 ~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 195 VMDSVRQAKLAVQMDVLD-GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp HHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence 77777655431 112222 24566778888777 889999999888543 33 234467778899
Q ss_pred HHHHHHHHHh
Q 000992 1093 WEEALRVAFM 1102 (1196)
Q Consensus 1093 w~eA~rla~~ 1102 (1196)
|++|+....+
T Consensus 274 ~~~A~~~~~~ 283 (474)
T 4abn_A 274 YGEALEGFSQ 283 (474)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999875543
No 373
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.35 E-value=0.027 Score=55.89 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=52.5
Q ss_pred cChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHh
Q 000992 974 QLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAG 1040 (1196)
Q Consensus 974 ~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~ 1040 (1196)
+.|++|++++ .+|. ...++..+|..+...+++++|...|.++-. +-....+|...|++++|+....
T Consensus 56 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 56 GAVDRGTELLERSLADAPD-NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 5555555554 1222 234555667777777777777777766421 1122355666677777665544
Q ss_pred hc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1041 LL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1041 ~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+. ...+.. ......+|..+...|++.+|...+.+
T Consensus 135 ~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 135 IALGLRPNE-GKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcCccc-hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 31 001111 23445556666566666666555444
No 374
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.25 E-value=0.48 Score=45.18 Aligned_cols=58 Identities=26% Similarity=0.229 Sum_probs=28.1
Q ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1011 TTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1011 ~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.+|...|++++|++.+ ++++.++...+ ++.........+|..+...|++.+|...+.+
T Consensus 97 ~~~~~~~~~~~A~~~~------~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 97 NTYTLLQDYEKAIDYH------LKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHTTCHHHHHHHH------HHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHH------HHHHHHHHHcc-chHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3344444455555444 33444444433 2223334455566666666666666555443
No 375
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.081 Score=62.14 Aligned_cols=124 Identities=14% Similarity=0.127 Sum_probs=85.3
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhcccCH-------HHHHHHHHhCCCHHH
Q 000992 951 LKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCF-------EDAATTYFCCSSLEK 1021 (1196)
Q Consensus 951 l~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~-------~eAa~~y~~ag~~~k 1021 (1196)
++.+.-.|+ +++|+++..+. ++|..||=|. .+++.++.+...|...-...+.. --+.++=..+|+...
T Consensus 157 I~~~Ll~G~--~e~Av~~al~~-~lwa~ALlLAs~~g~e~~~~V~~~y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn~~~ 233 (441)
T 3mzk_B 157 VLAFLQTGN--HDEALRLALSK-RDYAIALLVGSLMGKDRWSEVIQKYLYEGFTAGPNDQKELAHFLLLIFQVFVGNSKM 233 (441)
T ss_dssp HHHHHHTTC--HHHHHHHHHHT-TCHHHHHHHHHTSCHHHHHHHHHHHHHCC------CTHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHcCC--HHHHHHHHHhC-CcHHHHHHHHHhcCHHHHHHHHHHHHHhhcccCCccccccccHHHHHHHHHcCCHHH
Confidence 344445677 89999999999 9999999998 89999999998777631111111 112444556799999
Q ss_pred HHHHHH--------HcCCHHHHHHHHhhcCCCHH--------HHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 1022 AMKAYR--------ASGNWSGVLTVAGLLKLGKD--------EVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 1022 Al~~y~--------~~g~w~~al~la~~l~~~~~--------~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
+++.+. ...+|++.+.+.-...-+.+ ...+.+.+|++.|.+.|+..+|--||+- ++
T Consensus 234 ~V~~l~~~~~~~~~~l~~Wre~lA~IlsN~~~~~~~~~~~p~~~~~~l~~LGd~L~~~g~~~aAhiCYL~-a~ 305 (441)
T 3mzk_B 234 AIKSFYTNNETSQWASENWKSIVAAVLINIPENNEDPLLIPPVVLEFLIEFGIFLTKKGLTAAASTLFII-GN 305 (441)
T ss_dssp HHHHHHHCHHHHHHHHHSHHHHHHHHHHTSCCCSSCTTCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-TT
T ss_pred HHHHhccCCccccchHhHHHHHHHHHHhCCCCchhhcccccchHHHHHHHHHHHHHhCCCcchhHHhHhc-cC
Confidence 998763 23489999975543221211 2346888999999999987767777665 54
No 376
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.18 E-value=0.068 Score=67.15 Aligned_cols=200 Identities=14% Similarity=0.062 Sum_probs=105.6
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEeccccccc-ccceeeccccccccccCCCCCCEEEEEEccCCCEEEE-EECCCc
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNE-RASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~-as~dG~ 98 (1196)
.+.+++||+.++.||.+.. .+.|+.++++ ... .......++.+ ...+.+|++.+.+..|.+ -...+.
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~--g~~~~~~~~~~i~~~--------~~~P~glavD~~~g~LY~tD~~~~~ 476 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLD--RAHGVSSYDTVISRD--------IQAPDGLAVDWIHSNIYWTDSVLGT 476 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESC--CCCC-CCCCCBCCSC--------C--CCCEECCCSSSBCEECCTTTSC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecC--CCCCCcceEEEEeCC--------CCCcceEEEEeeCCcEEEEeccCCe
Confidence 5678899999999999854 5679999883 200 00000000111 124566788765554444 356788
Q ss_pred EEEEECCCCeEEEeeee-cCcEEEEEECCCCCEEEEEe-CC-ceEEEEeccCceeeeeecccccCccccccCccccCCCC
Q 000992 99 LLLHSVDGNATEVVGRV-EGGVRFISPSPDGDLLGVTT-GF-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg~~-~~~I~~~awSPDg~~LA~~s-~d-~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
|.+++.++.....+... -.....++++|++..|..+. +. +.|...+.++..... +... .+ ..
T Consensus 477 I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~~---------~l----~~ 541 (699)
T 1n7d_A 477 VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE---------NI----QW 541 (699)
T ss_dssp EEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESCS---------SC----SS
T ss_pred EEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEeC---------CC----CC
Confidence 99999988765533221 13356788999766665543 22 455443322211110 0000 00 12
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc---CCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL---KAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~---~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
-..|+|+|++..|- ++. ...++|.+++. .|....+.-. .-.....|++-. ..|..+... .+.|
T Consensus 542 PnGlavd~~~~~LY-~aD-----~~~~~I~~~d~-dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~~-----~~~V 607 (699)
T 1n7d_A 542 PNGITLDLLSGRLY-WVD-----SKLHSISSIDV-NGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDII-----NEAI 607 (699)
T ss_dssp CCCEEECTTTCCEE-EEE-----TTTTEEEEECS-SSSCCEEECCCSSSCSSCCCCEEET--TEEEEECST-----TTCE
T ss_pred ccEEEEeccCCEEE-EEe-----cCCCeEEEEcc-CCCceEEEEecCCcCCCceEeEEEC--CEEEEEeCC-----CCeE
Confidence 25799999876554 332 23578999999 5643333321 112223445433 334333332 3467
Q ss_pred EEEeC-CCe
Q 000992 253 VFYER-NGL 260 (1196)
Q Consensus 253 ~~~e~-nGl 260 (1196)
..+++ +|.
T Consensus 608 ~~~d~~~G~ 616 (699)
T 1n7d_A 608 FSANRLTGS 616 (699)
T ss_dssp EEEETTTEE
T ss_pred EEEEccCCC
Confidence 77775 343
No 377
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.17 E-value=0.19 Score=56.31 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=38.8
Q ss_pred HhhCHHHHHHHHHHc---CCC--cH---HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHH
Q 000992 943 RLQRFENALKHIVSM---GDS--YH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 943 ~L~ry~~Al~~l~~~---g~~--~~---~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eA 1009 (1196)
.+|+|++|+..|.++ .+. .. -..-.++... +.|++|++.+ .+|.. ..++..+|..+...+++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS-GEYDKAVDCFTAALSVRPND-YLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHcCCHHHH
Confidence 789999999998865 222 11 1112344566 7888888877 23332 23444444444444444444
Q ss_pred HHHHH
Q 000992 1010 ATTYF 1014 (1196)
Q Consensus 1010 a~~y~ 1014 (1196)
...|.
T Consensus 271 ~~~~~ 275 (368)
T 1fch_A 271 VAAYR 275 (368)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 378
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.07 E-value=0.089 Score=54.02 Aligned_cols=112 Identities=9% Similarity=-0.189 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHc-CCHHHHHHHHhhcC---CCHHHHHHHHHHHH
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRAS-GNWSGVLTVAGLLK---LGKDEVAKLAQELC 1057 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~-g~w~~al~la~~l~---~~~~~~~~l~~~la 1057 (1196)
..++..+|..+...+++++|...|.++-. +-....+|... |+|++|+....+.- ..+.. ......+|
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~ 120 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP-YIANLNKG 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch-HHHHHHHH
Confidence 34667788888999999999999987622 12234677788 99999987665431 12222 35677889
Q ss_pred HHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1058 EELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1058 ~~L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
..+...|++.+|...|.+.+. + .-....+|.+.++|++|+....+
T Consensus 121 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 121 ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999877432 2 23445678889999999876554
No 379
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.01 E-value=0.037 Score=57.97 Aligned_cols=137 Identities=8% Similarity=-0.060 Sum_probs=85.5
Q ss_pred hcccHHHHhhCHHHHHHHHHHc---CCCcHH---HHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhccc
Q 000992 936 MRYTIDLRLQRFENALKHIVSM---GDSYHA---DCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVK 1004 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~---g~~~~~---~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~ 1004 (1196)
..+.+...+|+|++|++.+.++ .+.... ..-.+.... +.|++|++++ .+|. ...++..+|..+...+
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK-EMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLE 139 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc
Confidence 3456666788999999988765 222111 112334566 7888888877 2332 2446777889899999
Q ss_pred CHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1005 CFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1005 ~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
++++|..+|.++-. +.....+|...|++++|+....+. ...+.. ......+|..+...|++.+|...|.+
T Consensus 140 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH-ADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999887632 122346677778888887655432 111111 23455666666677777777666555
No 380
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.96 E-value=7 Score=49.52 Aligned_cols=163 Identities=13% Similarity=-0.020 Sum_probs=98.9
Q ss_pred CCEEEEEEccCCCEEEEE-ECCCcEEEEECCCC----e-EEEeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCc
Q 000992 76 DSITAFDYLMEKEALIVG-TSSGLLLLHSVDGN----A-TEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a-s~dG~I~lw~~~~~----~-~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d 148 (1196)
..+.+|+|.+....|..+ ...+.|..+++++. . ..+++..-.....+++.+.+..|-.+ +..+.|.+.+.++.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 478999999966655544 45677888888763 1 22333223456778898888666555 45677777665443
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-CCCceeE
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KAFMGAV 227 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-~~~~v~s 227 (1196)
....+.... -..-..|+..|.+.+|- ++.. .....|.+.+. +|....++-. .-.+...
T Consensus 504 ~~~~l~~~~---------------l~~P~gIaVDp~~g~LY-wtD~----g~~~~I~~~~~-dG~~~~~lv~~~l~~P~G 562 (791)
T 3m0c_C 504 KRKTLFREN---------------GSKPRAIVVDPVHGFMY-WTDW----GTPAKIKKGGL-NGVDIYSLVTENIQWPNG 562 (791)
T ss_dssp SEEEEEECT---------------TCCEEEEEEETTTTEEE-EEEC----SSSCEEEEEET-TSCCEEEEECSSCSCEEE
T ss_pred eEEEEEeCC---------------CCCcceEEEecCCCCEE-EecC----CCCCeEEEEec-CCCceEEEEeCCCCCceE
Confidence 322211111 02346899998744443 3321 12368999999 7766555432 2245689
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEE
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~ 264 (1196)
|++.|.+..|..+... ...|..++.+|.....
T Consensus 563 LavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~ 594 (791)
T 3m0c_C 563 ITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKT 594 (791)
T ss_dssp EEEETTTTEEEEEETT-----TTEEEEEETTSCSCEE
T ss_pred EEEecCCCeEEEEeCC-----CCcEEEEecCCCceEE
Confidence 9999988888777543 3578888888865443
No 381
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=94.94 E-value=1.1 Score=53.57 Aligned_cols=100 Identities=10% Similarity=-0.031 Sum_probs=61.5
Q ss_pred ChHHHHhhc-CCcHHHHHHHHHHHHHHhc-------ccCHH-------HHHHHHHhCCC---H------HHHHHHHHHcC
Q 000992 975 LFPLGLKLI-TDPAKMEQVLEAWADHLSD-------VKCFE-------DAATTYFCCSS---L------EKAMKAYRASG 1030 (1196)
Q Consensus 975 ly~~AL~L~-~d~~~~~~i~~~~A~~L~~-------~~~~~-------eAa~~y~~ag~---~------~kAl~~y~~~g 1030 (1196)
+|++|++.. .+ ..++..||.++.. .++++ +|..+|++|=. + ......+...|
T Consensus 260 ~y~~al~~~p~~----~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 260 AYEQCLLVLGHH----PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCC----HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 466666655 33 4677788888875 67776 88888887742 1 22335566677
Q ss_pred CHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 1031 NWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 1031 ~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
++++|..+-.+. ..++.....+...++..+...|++.+|..+|.+-+.
T Consensus 336 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 877777554431 112211123556667777777788888877776443
No 382
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=94.89 E-value=0.43 Score=50.08 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=28.4
Q ss_pred hhhcccHHHHhhCHHHHHHHHHHcC---CC--cHHHHH----HHHHHHhcChHHHHhhc
Q 000992 934 LLMRYTIDLRLQRFENALKHIVSMG---DS--YHADCL----NLMKKYAQLFPLGLKLI 983 (1196)
Q Consensus 934 ~~~r~~Id~~L~ry~~Al~~l~~~g---~~--~~~~al----e~~~~~~~ly~~AL~L~ 983 (1196)
.+.++......|+|++|+..|.++- +. ...++. ..+.+. +.|++|++.|
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~ 64 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAI 64 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 3445556666788999988887642 11 111221 223445 6777777766
No 383
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.87 E-value=0.088 Score=53.00 Aligned_cols=108 Identities=11% Similarity=-0.078 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCC----H----HHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSS----L----EKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQ 1061 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~----~----~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~ 1061 (1196)
.++..+|.-+...+++++|...|.++-. . .....++...++++.+.....+. ...+.. ......+|..+.
T Consensus 40 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~~~~~~lg~~~~ 118 (184)
T 3vtx_A 40 ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-ADAYYKLGLVYD 118 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHH
Confidence 4566778888888888888877776521 1 12224555666666666544321 111111 235566777777
Q ss_pred HcCChHHHHHHHHHhcC----CH---HHHHHHHHHhcCHHHHHHH
Q 000992 1062 ALGKPGEAAKIALDYCG----DV---TNGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1062 ~~~~~~eAa~i~~~yl~----d~---~~Ai~~y~~~~~w~eA~rl 1099 (1196)
..|+|.+|...|.+.+. +. -.-..+|.+.+++++|+..
T Consensus 119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 77888887777766331 21 1223455666666666554
No 384
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.85 E-value=0.25 Score=52.91 Aligned_cols=132 Identities=11% Similarity=-0.027 Sum_probs=60.8
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcC---CCc--HHHHH----HHHHHHhcChHHHHhhc-------CCcHHHHHHHHHHHH
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMG---DSY--HADCL----NLMKKYAQLFPLGLKLI-------TDPAKMEQVLEAWAD 998 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g---~~~--~~~al----e~~~~~~~ly~~AL~L~-------~d~~~~~~i~~~~A~ 998 (1196)
+.++.+....|+|++|+..|.++- +.. ..++. ..+... +.|++|++.| .+.......+-..|.
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQN-KEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 444455555666666666666541 111 01111 112334 5555555554 122234445555555
Q ss_pred HHhc--------ccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHH
Q 000992 999 HLSD--------VKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAA 1070 (1196)
Q Consensus 999 ~L~~--------~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa 1070 (1196)
-+.. .+++++|...|.+ +++.+-.......++.....+ ...+.+....+|..+...|+|.+|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~------~l~~~p~~~~~~~a~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQL------FIDRYPNHELVDDATQKIREL---RAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHH------HHHHCTTCTTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHH------HHHHCcCchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5555 5566666555543 222222222222222211111 1122233355667777777777777
Q ss_pred HHHHHh
Q 000992 1071 KIALDY 1076 (1196)
Q Consensus 1071 ~i~~~y 1076 (1196)
..|.+.
T Consensus 169 ~~~~~~ 174 (261)
T 3qky_A 169 VTYEAV 174 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776664
No 385
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.78 E-value=4.8 Score=45.06 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=13.5
Q ss_pred ccHHHHhhCHHHHHHHHHHc
Q 000992 938 YTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~ 957 (1196)
..+...+|+|++|+.++.++
T Consensus 100 a~~~~~~G~~~~A~~~~~~a 119 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKA 119 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 45566678888887776543
No 386
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.59 E-value=0.46 Score=55.92 Aligned_cols=82 Identities=13% Similarity=-0.052 Sum_probs=48.8
Q ss_pred hHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHH
Q 000992 976 FPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVA 1050 (1196)
Q Consensus 976 y~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~ 1050 (1196)
|++||++. .+-......+...|.-+..+|+|++|..+|++ |++.|.+ .++.+.-++.
T Consensus 310 ~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~------~L~i~~~------------~lg~~Hp~~a 371 (429)
T 3qwp_A 310 CQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR------TMEPYRI------------FFPGSHPVRG 371 (429)
T ss_dssp HHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH------HHHHHHH------------HSCSSCHHHH
T ss_pred HHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH------HHHhHHH------------HcCCCChHHH
Confidence 44555554 22234555666666666666666666666543 4444432 1232333445
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..+..||..+..+|+|++|..+|.+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5677788888888888888877665
No 387
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=94.41 E-value=0.09 Score=66.27 Aligned_cols=133 Identities=15% Similarity=0.117 Sum_probs=87.5
Q ss_pred HHHcCCCcHHHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCC----CHHHH----HHH
Q 000992 954 IVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS----SLEKA----MKA 1025 (1196)
Q Consensus 954 l~~~g~~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag----~~~kA----l~~ 1025 (1196)
+.+.|. +++|+++ |++||++. |+ ....+..+|.-|...+++++|...|.+|= ++..| -.+
T Consensus 19 ~~~~G~--~~eAi~~-------~~kAl~l~--P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 19 KREQGN--IEEAVRL-------YRKALEVF--PE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHTTC--HHHHHHH-------HHHHHHHC--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCC--HHHHHHH-------HHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334554 6777633 55666665 21 23466778999999999999999998862 22223 256
Q ss_pred HHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----CH---HHHHHHHHHhcCHHHHH
Q 000992 1026 YRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG----DV---TNGISLLIDARDWEEAL 1097 (1196)
Q Consensus 1026 y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~---~~Ai~~y~~~~~w~eA~ 1097 (1196)
|...|++++|+...++ +.++++. .+....+|..+...|++++|...|.+-+. +. -.-..+|.+.++|++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAF-ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 7788888888765443 1112222 35677899999999999999999887432 22 22345677778888776
Q ss_pred HH
Q 000992 1098 RV 1099 (1196)
Q Consensus 1098 rl 1099 (1196)
..
T Consensus 166 ~~ 167 (723)
T 4gyw_A 166 ER 167 (723)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 388
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.41 E-value=0.13 Score=61.96 Aligned_cols=82 Identities=5% Similarity=0.026 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC--------HHHHHHHH
Q 000992 1019 LEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD--------VTNGISLL 1087 (1196)
Q Consensus 1019 ~~kAl~~y~~~g~w~~al~la~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d--------~~~Ai~~y 1087 (1196)
|.-.+.+|.++|++++|+.+-.++ +..++. ..+..+...+.+.|+.++|.++|.+.... +...|..|
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL--RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc--ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 455677777777777777665543 333332 35677888888999999999999886432 77889999
Q ss_pred HHhcCHHHHHHHHHh
Q 000992 1088 IDARDWEEALRVAFM 1102 (1196)
Q Consensus 1088 ~~~~~w~eA~rla~~ 1102 (1196)
++++++++|+++..+
T Consensus 186 ~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 186 MDTKNADKVYKTLQR 200 (501)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHH
Confidence 999999999988654
No 389
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.32 E-value=0.36 Score=45.99 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=25.9
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i 1072 (1196)
+..|...|++++|++.| ++|+.+..........+...+..++..+...|+|.+|.+.
T Consensus 49 g~~~~~~~~~~~A~~~~------~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~ 105 (127)
T 4gcn_A 49 AAVYFEEKKFAECVQFC------EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105 (127)
T ss_dssp HHHHHHTTCHHHHHHHH------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHH------HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45555556666666655 3344444433222222223344444444444444444443
No 390
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.25 E-value=6.9 Score=44.60 Aligned_cols=194 Identities=16% Similarity=0.121 Sum_probs=100.8
Q ss_pred CEEEEEEccCCCEEEEE------------ECCCcEEEEECCC--CeE---EEeee-e---cCcEEEEEECC--CCC-EEE
Q 000992 77 SITAFDYLMEKEALIVG------------TSSGLLLLHSVDG--NAT---EVVGR-V---EGGVRFISPSP--DGD-LLG 132 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~a------------s~dG~I~lw~~~~--~~~---e~vg~-~---~~~I~~~awSP--Dg~-~LA 132 (1196)
..-+|+..|+|..+.+. ..+|.|.++|+++ .+. ++.|. . .-.-..+.+-+ ||+ +|.
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34567778877554443 1799999999873 333 33331 1 12345555545 565 344
Q ss_pred EEe---CCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecc---ccc--------c
Q 000992 133 VTT---GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF---CNS--------S 198 (1196)
Q Consensus 133 ~~s---~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~---d~~--------~ 198 (1196)
++. .+.+|-++..+-+.-....+... ++..+ .....+...+||.+++ .+.. ++. .
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~-~g~~~---------~~pND~~v~~~G~fyv-t~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTI-RHKLL---------PSVNDIVAVGPEHFYA-TNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEE-CCTTC---------SSEEEEEEEETTEEEE-EESCSCSSHHHHHHHHHTT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEecc-ccCCC---------CCCceEEEeCCCCEEe-cCCcEeCCcccccchhhcc
Confidence 442 24566666432211111111111 11111 3457899999999888 3431 100 0
Q ss_pred CCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC--CCeeEE--EEEeccCCCCc
Q 000992 199 KLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--NGLERS--SFDINEQIDST 274 (1196)
Q Consensus 199 ~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~--~f~l~~~~~~~ 274 (1196)
...+.|.-++. |++....++.. .-+.|+|||||+.+..+... ...|..|+. +|.... .|.+ .+.
T Consensus 200 ~~~g~vyr~d~--~~~~~~~~~l~-~pNGia~spDg~~lYvadt~-----~~~I~~~~~~~~g~l~~~~~~~~----~g~ 267 (355)
T 3sre_A 200 LAWSFVTYYSP--NDVRVVAEGFD-FANGINISPDGKYVYIAELL-----AHKIHVYEKHANWTLTPLRVLSF----DTL 267 (355)
T ss_dssp CCCEEEEEECT--TCCEEEEEEES-SEEEEEECTTSSEEEEEEGG-----GTEEEEEEECTTSCEEEEEEEEC----SSE
T ss_pred CCccEEEEEEC--CeEEEeecCCc-ccCcceECCCCCEEEEEeCC-----CCeEEEEEECCCCcEecCEEEeC----CCC
Confidence 01233444454 44433333322 23889999999988777653 356777764 343221 2322 234
Q ss_pred EEEEEEcc-CCCeeEEEEcc
Q 000992 275 VELLKWNC-MSDLLAAVVRF 293 (1196)
Q Consensus 275 V~~laWSp-Dg~~LAs~~~d 293 (1196)
.-.++..+ +|.+.+++..+
T Consensus 268 PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 268 VDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEEECTTTCCEEEEEESC
T ss_pred CceEEEeCCCCcEEEEecCC
Confidence 56788888 58877655433
No 391
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.06 E-value=0.14 Score=55.20 Aligned_cols=127 Identities=13% Similarity=0.011 Sum_probs=73.4
Q ss_pred hhCHHHHHHHHHHcCCCcHHHHH----HHHHH----HhcChHHHHhhc---CCcHHHHHHHHHHHHHHhc----ccCHHH
Q 000992 944 LQRFENALKHIVSMGDSYHADCL----NLMKK----YAQLFPLGLKLI---TDPAKMEQVLEAWADHLSD----VKCFED 1008 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g~~~~~~al----e~~~~----~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~----~~~~~e 1008 (1196)
.+++++|+.+|.++-......+. .++.. . +.|++|++.| .+. .....+..+|..+.. .+++++
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVS-QNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcc-cCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHH
Confidence 77888888888765211011111 12234 5 7788888877 111 134556667777777 888888
Q ss_pred HHHHHHhCC---CHH---HHHHHHHH----cCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH----cCChHHHHHHH
Q 000992 1009 AATTYFCCS---SLE---KAMKAYRA----SGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQA----LGKPGEAAKIA 1073 (1196)
Q Consensus 1009 Aa~~y~~ag---~~~---kAl~~y~~----~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~----~~~~~eAa~i~ 1073 (1196)
|...|.++- +.. ..-.+|.. .+++++|+....+. ..+. ......++..+.. .+++.+|...|
T Consensus 133 A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 133 AVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD---SPGCFNAGNMYHHGEGATKNFKEALARY 209 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 888887652 111 11244455 56677766544321 1111 2345567777777 78888887777
Q ss_pred HH
Q 000992 1074 LD 1075 (1196)
Q Consensus 1074 ~~ 1075 (1196)
.+
T Consensus 210 ~~ 211 (273)
T 1ouv_A 210 SK 211 (273)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 392
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=93.91 E-value=0.43 Score=49.71 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHh
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFC 1015 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~ 1015 (1196)
++..+|.-+...++|++|...|.+
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~ 101 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIATLTE 101 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHH
Confidence 333444444444444444444433
No 393
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=93.76 E-value=0.77 Score=54.99 Aligned_cols=70 Identities=6% Similarity=-0.178 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChH
Q 000992 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPG 1067 (1196)
Q Consensus 988 ~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~ 1067 (1196)
.....+..+|.-+..+|+|++|..+|++ |++.+.. .++.+-..+.++...++....++++|.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~------Al~i~~~------------~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICK------AYAILLV------------THGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHH------------HTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHH------HHHHHHH------------HhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666555555543 3333222 234344456667777888888889999
Q ss_pred HHHHHHHH
Q 000992 1068 EAAKIALD 1075 (1196)
Q Consensus 1068 eAa~i~~~ 1075 (1196)
+|+.+|.+
T Consensus 453 ~ae~~~~~ 460 (490)
T 3n71_A 453 QNEFMYHK 460 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999877
No 394
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=93.75 E-value=1.4 Score=46.16 Aligned_cols=23 Identities=13% Similarity=-0.107 Sum_probs=16.5
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
+..+.+...+|+|++|+..|.+.
T Consensus 45 ~~lg~~~~~~~~~~~A~~~~~~~ 67 (225)
T 2yhc_A 45 LDLIYAYYKNADLPLAQAAIDRF 67 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 44456666788899998887653
No 395
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.72 E-value=5.9 Score=48.55 Aligned_cols=75 Identities=13% Similarity=0.046 Sum_probs=43.9
Q ss_pred EeeecCCCE----EEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE------C
Q 000992 26 SALDIEQNR----LFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT------S 95 (1196)
Q Consensus 26 ~~~d~~~~~----l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as------~ 95 (1196)
.++.+.++. ||+++.++.++.+|. .+++..|+... +..-....+. ...++ .++ .+++++ .
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa--~TG~~~W~~~~-~~~~~~~~~~-ssP~v-----~~g-~V~vg~~g~e~g~ 180 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNA--ETGETVWKVEN-SDIKVGSTLT-IAPYV-----VKD-KVIIGSSGAELGV 180 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEET--TTCCEEEEEEC-CCGGGTCBCC-SCCEE-----ETT-EEEECCBCGGGTC
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEEC--CCCCEEEeecC-CCCCccceee-cCCEE-----ECC-EEEEEecccccCC
Confidence 455445556 999999999999999 77777677541 1100000010 11111 134 444544 3
Q ss_pred CCcEEEEECCCCeEE
Q 000992 96 SGLLLLHSVDGNATE 110 (1196)
Q Consensus 96 dG~I~lw~~~~~~~e 110 (1196)
+|.|.-+|..+++..
T Consensus 181 ~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQV 195 (599)
T ss_dssp CCEEEEEETTTCCEE
T ss_pred CCeEEEEECCCCcEE
Confidence 788999999887653
No 396
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.65 E-value=4 Score=46.40 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=78.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC----CceEEEee
Q 000992 117 GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD----GKYFATLS 192 (1196)
Q Consensus 117 ~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD----G~~lAsvs 192 (1196)
..-+.++|.|||.++++--..|.|.+++........+. ... ..+.....+...|+++|| |.++++-+
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~--~~~-------~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELG--EVP-------GVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--ECT-------TCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeec--ccC-------ceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 45789999999997776655888987753211111111 000 001112245689999995 65555222
Q ss_pred ccccccCCCCEEEEEECCCC----------cEEEE-ecc-CCCceeEEEEcCCCCeEEEEecCCC-------CCCCCeEE
Q 000992 193 EFCNSSKLHKRLKVWERDSG----------TLQAS-SEL-KAFMGAVLEWMPSGANIAAVYDRKS-------ENKCPSIV 253 (1196)
Q Consensus 193 s~d~~~~~d~~irVWd~~~G----------~l~~~-~e~-~~~~v~slawsPdG~~IAs~s~d~~-------~~~~~~V~ 253 (1196)
.. ..++.+| |....+ +.+.. ... ....-..|+|.|||.+..+.++..+ ......|.
T Consensus 103 ~~----~~~~v~R-~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~Il 177 (347)
T 3das_A 103 SA----SDNRIVR-MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKIL 177 (347)
T ss_dssp CS----SSEEEEE-EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEE
T ss_pred cC----CCCEEEE-EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEE
Confidence 11 1223333 443221 11111 111 1123367999999998877654221 01124454
Q ss_pred EEeCCCee--------EEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000992 254 FYERNGLE--------RSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 254 ~~e~nGl~--------~~~f~l~~~~~~~V~~laWSpDg~~LAs 289 (1196)
=++.+|.. ...|.. + -.....++|+|+|++.++
T Consensus 178 Ri~~dG~ip~~nPf~~~~i~a~-G--~RNp~Gla~dp~G~L~~~ 218 (347)
T 3das_A 178 RMTPDGEPAPGNPFPGSPVYSY-G--HRNVQGLAWDDKQRLFAS 218 (347)
T ss_dssp EECTTSSBCTTCSSTTCCEEEB-C--CSBCCEEEECTTCCEEEE
T ss_pred EEeCCCCccCCCCCCCCeEEee-C--CCCcceEEECCCCCEEEE
Confidence 45555531 111111 0 113557889988876554
No 397
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=93.57 E-value=1.1 Score=49.07 Aligned_cols=17 Identities=6% Similarity=-0.193 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCCchhHH
Q 000992 1094 EEALRVAFMHRREDLIT 1110 (1196)
Q Consensus 1094 ~eA~rla~~~~~~dL~e 1110 (1196)
.+|+.++...+.+.+.+
T Consensus 261 ~~Al~i~~~~~~~~~~~ 277 (293)
T 3u3w_A 261 KKASFFFDILEMHAYKE 277 (293)
T ss_dssp HHHHHHHHHTTCTGGGG
T ss_pred HHHHHHHHHhCCHHHHH
Confidence 44777777665555443
No 398
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=93.50 E-value=7.7 Score=44.07 Aligned_cols=197 Identities=11% Similarity=0.097 Sum_probs=104.3
Q ss_pred ecCCCEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC----CCE--EEEEEC----CC
Q 000992 29 DIEQNRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME----KEA--LIVGTS----SG 97 (1196)
Q Consensus 29 d~~~~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd----~~~--La~as~----dG 97 (1196)
|+.... +++ ...++++.+|+ ..+.. ..+ +.+.+..|..-|+ |+. |+.++. ++
T Consensus 37 dp~~s~-ii~t~k~~gL~Vydl--~G~~l----~~~----------~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n 99 (355)
T 3amr_A 37 TPQNSK-LITTNKKSGLVVYSL--DGKML----HSY----------NTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKN 99 (355)
T ss_dssp CGGGCE-EEEEETTTEEEEEET--TSCEE----EEE----------CCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCC
T ss_pred CCCccE-EEEEcCCCCEEEEcC--CCcEE----EEc----------cCCCcccEEEecccccCCceEeEEEEeCCCCCCC
Confidence 444444 555 44668999998 33332 211 2346777766663 332 555554 46
Q ss_pred cEEEEEC--CCCeEEEeeee----c---CcEEEEEE--CCC-CCE-EEEEeCCceEEEEeccCc--e-eeeeecccccCc
Q 000992 98 LLLLHSV--DGNATEVVGRV----E---GGVRFISP--SPD-GDL-LGVTTGFGQILVMTHDWD--L-LYENPLEELAEG 161 (1196)
Q Consensus 98 ~I~lw~~--~~~~~e~vg~~----~---~~I~~~aw--SPD-g~~-LA~~s~d~tV~l~~~~~d--~-~~~~~l~~~~~~ 161 (1196)
+|.++++ .++++..++.. . ..+..++. +|+ |++ +.+...+|.+..|.-... . +.....+...
T Consensus 100 ~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-- 177 (355)
T 3amr_A 100 TIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-- 177 (355)
T ss_dssp EEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--
T ss_pred eEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--
Confidence 7999955 56677655431 1 45666777 885 554 444456777765432110 0 1111111110
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-----CCcEEEEec--cCCCceeEEEE--cC
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-----SGTLQASSE--LKAFMGAVLEW--MP 232 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-----~G~l~~~~e--~~~~~v~slaw--sP 232 (1196)
....+-.+.-.+...+|- ++- ++.-|..++.+ +++++.... .....+..|+. .+
T Consensus 178 ----------lgsq~EgcvvDd~~g~Ly-v~e------Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~ 240 (355)
T 3amr_A 178 ----------MNSQTEGMAADDEYGRLY-IAE------EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAA 240 (355)
T ss_dssp ----------CSSCEEEEEEETTTTEEE-EEE------TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECG
T ss_pred ----------CCCCcceEEEcCCCCeEE-Eec------ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecC
Confidence 012334556666555554 453 34557777743 245555432 12234577777 67
Q ss_pred CCC--eEEEEecCCCCCCCCeEEEEeCCC--eeEEEEEe
Q 000992 233 SGA--NIAAVYDRKSENKCPSIVFYERNG--LERSSFDI 267 (1196)
Q Consensus 233 dG~--~IAs~s~d~~~~~~~~V~~~e~nG--l~~~~f~l 267 (1196)
+|+ +|||++.+ ....+|++.+ ...+.|.+
T Consensus 241 ~g~gyLivSsQG~------~s~~Vydr~~~~~~vg~f~I 273 (355)
T 3amr_A 241 DGKGYLMASSQGN------SSYAIYDRQGKNKYVADFRI 273 (355)
T ss_dssp GGCEEEEEEEGGG------TEEEEEESSTTCCEEEEEEE
T ss_pred CCCEEEEEEcCCC------CEEEEEECCCCCcEEEEEEe
Confidence 766 66776654 4788999863 33444443
No 399
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=93.48 E-value=2.1 Score=50.53 Aligned_cols=14 Identities=0% Similarity=-0.275 Sum_probs=9.2
Q ss_pred hhCHHHHHHHHHHc
Q 000992 944 LQRFENALKHIVSM 957 (1196)
Q Consensus 944 L~ry~~Al~~l~~~ 957 (1196)
.+++++|+++|.++
T Consensus 200 ~~~~~~A~~~~~~a 213 (490)
T 2xm6_A 200 ERNDAISAQWYRKS 213 (490)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 46677777776654
No 400
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.36 E-value=1.6 Score=48.02 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..+...++..+.+.|++.+|..++.+
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666667777677777777666555
No 401
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=93.30 E-value=0.4 Score=47.72 Aligned_cols=106 Identities=10% Similarity=0.026 Sum_probs=56.0
Q ss_pred HHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH----HHH----HHHHHHcCCHHHHH
Q 000992 965 CLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL----EKA----MKAYRASGNWSGVL 1036 (1196)
Q Consensus 965 ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~----~kA----l~~y~~~g~w~~al 1036 (1196)
..+++... ..|++|+++- |+ ....+...|..+...++|++|...|.++-.. ..+ -.+|...|+|++|+
T Consensus 15 l~~~~~~~-~~l~~al~l~--p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 15 VIDAINSG-ATLKDINAIP--DD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHHHTS-CCTGGGCCSC--HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCC-CCHHHHhCCC--HH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHH
Confidence 34445555 6666666543 32 2234456667777777777777777665211 111 24555666666665
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1037 TVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1037 ~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+. .++|+. ......+|..+...|++.+|...|.+
T Consensus 91 ~~~~~al~l~P~~-~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 91 DLYAVAFALGKND-YTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHHHHHSSSC-CHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 433221 111111 13455666667667777776666544
No 402
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=93.16 E-value=30 Score=45.68 Aligned_cols=232 Identities=12% Similarity=0.091 Sum_probs=114.5
Q ss_pred CCCEEEEEeC--CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC----CCEEEEEE---CCCcEEE
Q 000992 31 EQNRLFFASS--ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME----KEALIVGT---SSGLLLL 101 (1196)
Q Consensus 31 ~~~~l~~~s~--~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd----~~~La~as---~dG~I~l 101 (1196)
+++.||++|. |+.++.|+. ...+....+.- +.. +..-+.|.++..-.. ...|++++ .+|.+++
T Consensus 336 ~~g~lFvgS~~Gds~l~~~~~--~~~~~~~~~~~----~~~--~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~ 407 (1158)
T 3ei3_A 336 DNGVVFVGSRLGDSQLVKLNV--DSNEQGSYVVA----MET--FTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 407 (1158)
T ss_dssp STTEEEEECSSSCEEEEEECS--SCCTTSCCEEE----EEE--ECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEE
T ss_pred CCCEEEEEEecCCcEEEEEec--CCCCccceEEe----Eee--ecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEE
Confidence 4668999977 556776664 11110000000 111 112367888877432 23554443 4577877
Q ss_pred EECCCCe-----EEEeeeecCcEEEEEEC---CCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 102 HSVDGNA-----TEVVGRVEGGVRFISPS---PDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 102 w~~~~~~-----~e~vg~~~~~I~~~awS---PDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
+...=+. .+.-| + .+||++.-+ +...+|++...+.|.++ .-..+.+.+...... .+ .
T Consensus 408 lr~Gi~~~~~~~~~l~g-v-~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl-~i~~e~veev~~~gf-----~~------~- 472 (1158)
T 3ei3_A 408 IRNGIGIHEHASIDLPG-I-KGLWPLRSDPNRETDDTLVLSFVGQTRVL-MLNGEEVEETELMGF-----VD------D- 472 (1158)
T ss_dssp EEESBCEEEEEEECCCS-C-CEEEEECCCSSCSSCCEEEEEETTEEEEE-EEETTEEEEECCTTC-----CS------S-
T ss_pred EecCCCEEEEEeecCCC-c-cEEEEEeecCCCCCCCEEEEECCCCeEEE-EEeCCcccccccccc-----cC------C-
Confidence 6543211 11112 1 467777654 33578888888888654 222344444321111 10 0
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC-ceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~-~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
..-..++=-++|.++= |.. +.||+.+.+.+.......+..+ .+...+-+. .+|+.++. ..+
T Consensus 473 ~~TL~~~~l~~~~ivQ-Vt~--------~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~g-------~~l 534 (1158)
T 3ei3_A 473 QQTFFCGNVAHQQLIQ-ITS--------ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAVG-------RAL 534 (1158)
T ss_dssp SCEEEEEEETTTEEEE-EES--------SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEET-------TEE
T ss_pred CCcEEEEEcCCCeEEE-Eec--------CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEEC-------CEE
Confidence 0001111124454333 432 4577777644444444443222 234444332 34444432 246
Q ss_pred EEEeCC-CeeEEEEEeccCCCCcEEEEEEccC------CCeeEEEEc-cCCcceEEEEEecCCE
Q 000992 253 VFYERN-GLERSSFDINEQIDSTVELLKWNCM------SDLLAAVVR-FEEYDSVKICFFSNNH 308 (1196)
Q Consensus 253 ~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpD------g~~LAs~~~-d~~~~~V~lW~~~n~~ 308 (1196)
..|+.+ |... +. -+...+..|.+++++|. ++++|+|.. |. +|+|..+.+..
T Consensus 535 ~~fel~~~~L~-~~-~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~---tv~I~sL~~l~ 593 (1158)
T 3ei3_A 535 YYLQIHPQELR-QI-SHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDI---SARILKLPSFE 593 (1158)
T ss_dssp EEEEEETTEEE-EE-EEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTT---EEEEEETTTCC
T ss_pred EEEEeeCCcee-ee-cccCCCCceEEEEeecCCCCcccccEEEEEECCCC---EEEEEECCCCC
Confidence 667643 3211 11 11112346999999864 479999997 87 89999987654
No 403
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.10 E-value=0.57 Score=50.29 Aligned_cols=157 Identities=12% Similarity=0.033 Sum_probs=87.3
Q ss_pred cHHHHhhCHHHHHHHHHHcCCCcHHHHH----HHHHH----HhcChHHHHhhc---CCcHHHHHHHHHHHHHHhc----c
Q 000992 939 TIDLRLQRFENALKHIVSMGDSYHADCL----NLMKK----YAQLFPLGLKLI---TDPAKMEQVLEAWADHLSD----V 1003 (1196)
Q Consensus 939 ~Id~~L~ry~~Al~~l~~~g~~~~~~al----e~~~~----~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~----~ 1003 (1196)
.+....|+|++|+.+|.++-......+. .++.. . +.|++|++.| .+. .....+..+|..+.. .
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~ 91 (273)
T 1ouv_A 14 AKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDL-NYSNGCHLLGNLYYSGQGVS 91 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcC-CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhCCCCcc
Confidence 3444556777777777654211111111 12233 5 6777777777 111 134566677788877 8
Q ss_pred cCHHHHHHHHHhCC---CHH---HHHHHHHH----cCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH----cCChHH
Q 000992 1004 KCFEDAATTYFCCS---SLE---KAMKAYRA----SGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQA----LGKPGE 1068 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag---~~~---kAl~~y~~----~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~----~~~~~e 1068 (1196)
+++++|...|.++- +.+ ..-.+|.. .+++++|+....+. ..+. ......++..+.. .+++.+
T Consensus 92 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~~~~~~~~~~~ 168 (273)
T 1ouv_A 92 QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND---GDGCTILGSLYDAGRGTPKDLKK 168 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHcCCCCCCCHHH
Confidence 88888888887762 211 11245556 67777777544331 1111 2345567777776 788888
Q ss_pred HHHHHHHhc--CCHHH---HHHHHHH----hcCHHHHHHHH
Q 000992 1069 AAKIALDYC--GDVTN---GISLLID----ARDWEEALRVA 1100 (1196)
Q Consensus 1069 Aa~i~~~yl--~d~~~---Ai~~y~~----~~~w~eA~rla 1100 (1196)
|...|.+-+ ++++. ...+|.+ .+++++|+...
T Consensus 169 A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 169 ALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY 209 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 888776632 33322 2234555 66777776543
No 404
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=92.89 E-value=11 Score=40.92 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=27.9
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEA 1069 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eA 1069 (1196)
+.+|...|++++|++.|. +|+.++...+ +...+..++..+|..+...|++.+|
T Consensus 203 g~~y~~~~~y~~Al~~~~------kal~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 203 AKALYLDSRYEESLYQVN------KAIEISCRIN-SMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHTTCHHHHHHHHH------HHHHHHHHTT-BCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHhhHHHHHHHHH------HHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 445555566666666553 3333433322 1112234566677777777777776
No 405
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=92.85 E-value=0.37 Score=47.32 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+.+|...|++++|+.+|. +++.+- ++. .+....+|..+...|++.+|++.|++
T Consensus 72 g~~~~~~~~~~~A~~~~~------~al~~~------p~~-~~~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 72 GLLYELEENTDKAVECYR------RSVELN------PTQ-KDLVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp HHHHHHTTCHHHHHHHHH------HHHHHC------TTC-HHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHH------HHHHhC------CCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 455666677777777663 334322 111 24667788888888998888877643
No 406
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.84 E-value=1.1 Score=52.91 Aligned_cols=70 Identities=14% Similarity=-0.001 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChH
Q 000992 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPG 1067 (1196)
Q Consensus 988 ~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~ 1067 (1196)
.....+...|.-+..+|+|++|..+|++ |++.+.+ .++.+.-++...+..||..+..+|+|+
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~------aL~i~~~------------~lG~~Hp~~a~~l~nLa~~~~~qg~~~ 399 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQK------IIKPYSK------------HYPVYSLNVASMWLKLGRLYMGLENKA 399 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHH------------HSCSSCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHH------HHHHHHH------------HcCCCChHHHHHHHHHHHHHHhccCHH
Confidence 4555666666666677777776666654 3444432 233333455566778888888899998
Q ss_pred HHHHHHHH
Q 000992 1068 EAAKIALD 1075 (1196)
Q Consensus 1068 eAa~i~~~ 1075 (1196)
+|..+|.+
T Consensus 400 eA~~~~~~ 407 (433)
T 3qww_A 400 AGEKALKK 407 (433)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888666
No 407
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=92.80 E-value=0.28 Score=61.55 Aligned_cols=162 Identities=13% Similarity=-0.012 Sum_probs=92.0
Q ss_pred CCEEEEEEccCCCEEEEE-ECCCcEEEEECCC----CeEE-EeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCc
Q 000992 76 DSITAFDYLMEKEALIVG-TSSGLLLLHSVDG----NATE-VVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a-s~dG~I~lw~~~~----~~~e-~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d 148 (1196)
..+.+|+|.+++..|..+ ...+.|..+++++ .... ++..--.....+++.+.+..|..+ ...+.|.+++.+..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 467889999987777655 3557899999876 2222 221101124567788655544443 45677777654433
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeE
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAV 227 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~s 227 (1196)
....+ +... -..-..|++.|++.+|. ++... ...+|.+.+. +|....+.- ..-.....
T Consensus 486 ~~~~l-~~~~--------------~~~P~giavDp~~g~ly-~td~~----~~~~I~~~~~-dG~~~~~l~~~~l~~PnG 544 (699)
T 1n7d_A 486 KRKTL-FREQ--------------GSKPRAIVVDPVHGFMY-WTDWG----TPAKIKKGGL-NGVDIYSLVTENIQWPNG 544 (699)
T ss_dssp CEEEE-CCCS--------------SCCCCCEECCSSSSCCE-ECCCS----SSCCEEBCCS-SSCCCCEESCSSCSSCCC
T ss_pred ceEEE-EeCC--------------CCCcceEEEccCCCcEE-EcccC----CCCeEEEEeC-CCCCeeEEEeCCCCCccE
Confidence 22111 1100 01225688998665444 33211 2267888887 665443331 11233478
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1196)
|+|+|++..|-.+... ...|..++.+|....
T Consensus 545 lavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~ 575 (699)
T 1n7d_A 545 ITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRK 575 (699)
T ss_dssp EEECTTTCCEEEEETT-----TTEEEEECSSSSCCE
T ss_pred EEEeccCCEEEEEecC-----CCeEEEEccCCCceE
Confidence 9999998877666543 357888888875443
No 408
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=92.79 E-value=1.2 Score=54.97 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHh--hcCCC-----HHHHHHHHHHHHH
Q 000992 986 PAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAG--LLKLG-----KDEVAKLAQELCE 1058 (1196)
Q Consensus 986 ~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~--~l~~~-----~~~~~~l~~~la~ 1058 (1196)
++..+.|...-|+.++++|++++|..+|..||+|++|++...++- .+++.... +-.++ .+++..++..+.+
T Consensus 439 ~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~L--s~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~ 516 (661)
T 2qx5_A 439 KEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLL--SDTLSASDLDQPLVGPDDNSETNPVLLARRMAS 516 (661)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHH--HHHhcccccccccccccccccccHHHHHHHHHH
Confidence 345778889999999999999999999999999999999886654 33443211 10000 1346678888888
Q ss_pred HHHHcCC--------hHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhc
Q 000992 1059 ELQALGK--------PGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMH 1103 (1196)
Q Consensus 1059 ~L~~~~~--------~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~ 1103 (1196)
.+..... -.++-.++++ +-++.+. ...++|++|+....+-
T Consensus 517 ~y~~~~~~~~~~~~~~~~t~~lLl~----l~~f~~~-~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 517 IYFDNAGISRQIHVKNKEICMLLLN----ISSIREL-YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHTTSCHHHHHHHHHHHH----HHHHHHH-HHTTCHHHHHHHHHHT
T ss_pred HHhcCchhhhhccHHHHHHHHHHHH----HHHHHHH-HHcCCHHHHHHHHHhC
Confidence 8765421 2244444444 3333333 5578899999888764
No 409
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.56 E-value=0.23 Score=62.08 Aligned_cols=101 Identities=9% Similarity=-0.109 Sum_probs=58.3
Q ss_pred cChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHh
Q 000992 974 QLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAG 1040 (1196)
Q Consensus 974 ~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~ 1040 (1196)
+.|++|++.| .+|.. ..++..+|.-+...++|++|...|.++=. +-..-.+|...|+|++ +....
T Consensus 447 g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 447 GDVAKATRKLDDLAERVGWR-WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp TCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred CCHHHHHHHHHHHhccCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 5666776665 13322 34556677777777888888777776521 1122245566666554 32221
Q ss_pred h-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1041 L-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1041 ~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
+ +..+++. ......+|..+...|++++|...|.+.+
T Consensus 525 ~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 525 TVWSTNDGV-ISAAFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHhCCch-HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 1 1112222 2356677888888888888888877743
No 410
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.44 E-value=0.16 Score=61.68 Aligned_cols=85 Identities=11% Similarity=-0.056 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCC-----C---HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCS-----S---LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQ 1061 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag-----~---~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~ 1061 (1196)
.++..+|.-+...++|++|...|.++- + +-....+|...|++++|+....+. ..+++. ......++..+.
T Consensus 58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~ 136 (568)
T 2vsy_A 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE-PYITAQLLNWRR 136 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 345556666666666666666666541 1 112224555666666665443321 111211 245667888888
Q ss_pred Hc---CChHHHHHHHHHh
Q 000992 1062 AL---GKPGEAAKIALDY 1076 (1196)
Q Consensus 1062 ~~---~~~~eAa~i~~~y 1076 (1196)
.. |++.+|...|.+.
T Consensus 137 ~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 137 RLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HTTCCTTHHHHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHH
Confidence 88 8888888887763
No 411
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.39 E-value=6.3 Score=46.49 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=56.6
Q ss_pred cEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccc--cCCCCeEEEEEcc----CCceEEE
Q 000992 118 GVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELS--SSFSFKSPISWRG----DGKYFAT 190 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~--~~~~~v~~isWsp----DG~~lAs 190 (1196)
.-++++|.|||+++++-...+.|.+++.. ... ..+ .... ..+. ....+...|+|+| +|.+++
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~--~~~~-------~~~~~~~g~~Gllgia~~Pdf~~~g~lYv- 96 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTV--FQVP-------EIVNDADGQNGLLGFAFHPDFKNNPYIYI- 96 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE--EECT-------TCCCCTTSSCSEEEEEECTTTTTSCEEEE-
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEE--ecCC-------ccccccCCCCceeEEEECCCcCcCCEEEE-
Confidence 46799999999977765444467766421 211 111 0000 0000 1235678999999 565555
Q ss_pred eeccc-cccCC-----CCEEEEEECC--CCcE-----EEE-ecc-CCCceeEEEEcCCCCeEEEEec
Q 000992 191 LSEFC-NSSKL-----HKRLKVWERD--SGTL-----QAS-SEL-KAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 191 vss~d-~~~~~-----d~~irVWd~~--~G~l-----~~~-~e~-~~~~v~slawsPdG~~IAs~s~ 242 (1196)
+.+.. +...+ ...|.-|+.. ++.+ +.. ... .......|+|.|||++..+.++
T Consensus 97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 22210 00000 1233333331 2222 111 111 1233589999999998777654
No 412
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.31 E-value=1.6 Score=49.98 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.+...+|..+.+.|+|.+|..++.+
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHH
Confidence 3445556666666666666555443
No 413
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=92.28 E-value=1.1 Score=45.01 Aligned_cols=64 Identities=22% Similarity=0.198 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHH----HHHHHHHHHcCChHHHHHHHHH
Q 000992 1006 FEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLA----QELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~----~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
|..-+..+...|++++|+++|.++-.. +..+.. ++++.. ... ...+..|...|+|++|...|.+
T Consensus 60 ~~n~g~al~~Lgr~~eAl~~~~kAL~l---~n~~~e--~~pd~~-~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 60 HAGLAEALAGLRSFDEALHSADKALHY---FNRRGE--LNQDEG-KLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHCC--TTSTHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---hhcccc--CCCchH-HHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 445566677777777777776443210 111222 233332 234 6778888888888888777554
No 414
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=92.18 E-value=2 Score=48.24 Aligned_cols=80 Identities=10% Similarity=-0.053 Sum_probs=40.1
Q ss_pred hcccHHHHhhCHHHHHHHHHHc----CCC-cHHH--HH----HHHHHHhcChHHHHhhc----------CCcHHHHHHHH
Q 000992 936 MRYTIDLRLQRFENALKHIVSM----GDS-YHAD--CL----NLMKKYAQLFPLGLKLI----------TDPAKMEQVLE 994 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~----g~~-~~~~--al----e~~~~~~~ly~~AL~L~----------~d~~~~~~i~~ 994 (1196)
.+..+....|++++|+.++.++ ... .... +. ..+... +.|++|++++ .++......+.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3455666788888888887653 111 1111 11 122344 5566665554 12222223344
Q ss_pred HHHHHHhcccCHHHHHHHHHhC
Q 000992 995 AWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 995 ~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
..|..+..+|+|++|...|.++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~a 119 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKA 119 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555666666665555543
No 415
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=92.18 E-value=0.2 Score=46.29 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=6.2
Q ss_pred HhhCHHHHHHHHH
Q 000992 943 RLQRFENALKHIV 955 (1196)
Q Consensus 943 ~L~ry~~Al~~l~ 955 (1196)
..|++++|+.++.
T Consensus 13 ~~~~~~~A~~~~~ 25 (136)
T 2fo7_A 13 KQGDYDEAIEYYQ 25 (136)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HcCcHHHHHHHHH
Confidence 3445555554444
No 416
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=92.01 E-value=0.27 Score=45.24 Aligned_cols=24 Identities=17% Similarity=0.004 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....++..+...|++.+|...+.+
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~ 94 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQK 94 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 344555556666666666666554
No 417
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=91.97 E-value=2.1 Score=47.97 Aligned_cols=108 Identities=12% Similarity=-0.022 Sum_probs=65.9
Q ss_pred HHHHHHHhcccCHHHHHHHHHhC-------CCH---HHHHHHHHHcCCHHHHHHHHhhcC-CCHH---HHHHHHHHHHH-
Q 000992 994 EAWADHLSDVKCFEDAATTYFCC-------SSL---EKAMKAYRASGNWSGVLTVAGLLK-LGKD---EVAKLAQELCE- 1058 (1196)
Q Consensus 994 ~~~A~~L~~~~~~~eAa~~y~~a-------g~~---~kAl~~y~~~g~w~~al~la~~l~-~~~~---~~~~l~~~la~- 1058 (1196)
...|.-+...+++++|...+.+. +.. -.++++|.+.|+.+.|..+.+++. .+++ .-..+...+++
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence 35666666677777777777766 222 244567777777777777664431 1220 00123334443
Q ss_pred ---HHHHcCChHHHHHHHHHhcCCH------HHHHHHHHHhcCHHHHHHHHH
Q 000992 1059 ---ELQALGKPGEAAKIALDYCGDV------TNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1059 ---~L~~~~~~~eAa~i~~~yl~d~------~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
.+...+++.+|..+|.+.+..+ ..-..++...++|++|-++..
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 3333458999999998865443 344557889999999977653
No 418
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=91.87 E-value=0.81 Score=53.23 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=14.6
Q ss_pred ccHHHHhhCHHHHHHHHHHc
Q 000992 938 YTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~ 957 (1196)
+.|...+|+|++|+++|.++
T Consensus 58 g~~~~~~G~~~eAl~~~~kA 77 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKA 77 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 45556678888888887764
No 419
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=91.84 E-value=3.2 Score=42.90 Aligned_cols=112 Identities=12% Similarity=0.025 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcChHHHHhhc-----CCc-HHHHHHHHHHHHHHhcccCHHHHHHHHHhCC----CH----HHHHHHHHH
Q 000992 963 ADCLNLMKKYAQLFPLGLKLI-----TDP-AKMEQVLEAWADHLSDVKCFEDAATTYFCCS----SL----EKAMKAYRA 1028 (1196)
Q Consensus 963 ~~ale~~~~~~~ly~~AL~L~-----~d~-~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag----~~----~kAl~~y~~ 1028 (1196)
..+..++ .. +.|++|++.| .+| ... .++...|.-+...++|++|...|.++- +. ..-..+|..
T Consensus 12 ~~g~~~~-~~-~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 12 NEGNDAL-NA-KNYAVAFEKYSEYLKLTNNQDS-VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHH-HT-TCHHHHHHHHHHHHHHTTTCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-Hc-cCHHHHHHHHHHHHhccCCCCc-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 3444444 45 7788888877 243 222 344447777777777777777777652 11 222356666
Q ss_pred cCCHHHHHHHHhhc-CCCHHH------HHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1029 SGNWSGVLTVAGLL-KLGKDE------VAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1029 ~g~w~~al~la~~l-~~~~~~------~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
.|++++|+....+. ...++. +......++..+...|+|.+|...|.+-+
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 67777777544331 101110 11334555555666666666666665533
No 420
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=91.83 E-value=0.11 Score=53.29 Aligned_cols=48 Identities=15% Similarity=-0.161 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcC----CH---HHHHHHHHHhcCHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCG----DV---TNGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~----d~---~~Ai~~y~~~~~w~eA~rl 1099 (1196)
+...+|..+...|+|.+|...|.+-+. +. -....+|...++|++|+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence 444555556666666666655554221 11 1223445556666666543
No 421
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=91.76 E-value=2.5 Score=49.84 Aligned_cols=70 Identities=6% Similarity=-0.138 Sum_probs=39.7
Q ss_pred hhCHHHHHHHHHHcCCC-cH----HHHHHHHHH----HhcChHHHHhhc---CCcHHHHHHHHHHHHHHhc----ccCHH
Q 000992 944 LQRFENALKHIVSMGDS-YH----ADCLNLMKK----YAQLFPLGLKLI---TDPAKMEQVLEAWADHLSD----VKCFE 1007 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g~~-~~----~~ale~~~~----~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~----~~~~~ 1007 (1196)
.+++++|+++|.++-+. .. ..+.-| .. . +.+++|+++| .+. .....+..+|..+.. .++++
T Consensus 128 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y-~~g~g~~-~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQGRDSGQQSMGDAY-FEGDGVT-RDYVMAREWYSKAAEQ-GNVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTSSSC-CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HcCCCCC-CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCcCHH
Confidence 45788888887765211 11 112111 22 3 5677888777 111 123455566666666 77888
Q ss_pred HHHHHHHhC
Q 000992 1008 DAATTYFCC 1016 (1196)
Q Consensus 1008 eAa~~y~~a 1016 (1196)
+|...|.++
T Consensus 205 ~A~~~~~~a 213 (490)
T 2xm6_A 205 ISAQWYRKS 213 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777764
No 422
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.75 E-value=3.4 Score=47.25 Aligned_cols=84 Identities=7% Similarity=-0.033 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCCH--------------HHHHHHHHHcCCHHHHHHHHh-------hcCCCHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSSL--------------EKAMKAYRASGNWSGVLTVAG-------LLKLGKDEV 1049 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--------------~kAl~~y~~~g~w~~al~la~-------~l~~~~~~~ 1049 (1196)
.+....+......+++++|..+|..+-.. .+-...|...|+|.+|+.+.. ... ++...
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~~ 174 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD-DKPSL 174 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-CSTHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc-cchhH
Confidence 34444455555555555555555443221 122344455555555554333 222 33344
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.+....++..+...|+|..|..+|.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 45555666666666666666665543
No 423
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=91.43 E-value=1 Score=49.82 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHhCC--C------HHHHHHHHHHcCCHHHHHHHHhhcC-C-CHHHHHHHHHHHHH
Q 000992 989 MEQVLEAWADHLSDVKCFEDAATTYFCCS--S------LEKAMKAYRASGNWSGVLTVAGLLK-L-GKDEVAKLAQELCE 1058 (1196)
Q Consensus 989 ~~~i~~~~A~~L~~~~~~~eAa~~y~~ag--~------~~kAl~~y~~~g~w~~al~la~~l~-~-~~~~~~~l~~~la~ 1058 (1196)
...+...||..|...++|++|..+|..+- . |..|+ .|.+.++|.+|+....... . ++..-......++.
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~-l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAV-VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHH-HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHH-HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHH
Confidence 46778888888888888888888887762 2 23333 5667788888887665432 1 12111346677888
Q ss_pred HHHHcCChHHHHHHHHH
Q 000992 1059 ELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1059 ~L~~~~~~~eAa~i~~~ 1075 (1196)
.|...|++.+|...|.+
T Consensus 180 al~~LG~~~eAl~~l~~ 196 (282)
T 4f3v_A 180 AAANLALFTEAERRLTE 196 (282)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 88888888888888777
No 424
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.27 E-value=12 Score=48.02 Aligned_cols=179 Identities=12% Similarity=0.130 Sum_probs=119.5
Q ss_pred hhhHHHHHHhcCChh-hhc------ccHHHHhhCHHHHHHHHHHcCCC--------cH----HHHHHHHHHHhcC--hHH
Q 000992 920 EFLPYLQELESMPPL-LMR------YTIDLRLQRFENALKHIVSMGDS--------YH----ADCLNLMKKYAQL--FPL 978 (1196)
Q Consensus 920 eYlpfL~~L~~l~~~-~~r------~~Id~~L~ry~~Al~~l~~~g~~--------~~----~~ale~~~~~~~l--y~~ 978 (1196)
+.||-|..|..=+.. .|+ -+|.-|||.|++|+++-..+|+- +. .+||+.+.+. +- ++.
T Consensus 52 ~~i~~ie~l~ed~~f~~r~laalvaSkvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~-~~~~~~~ 130 (963)
T 4ady_A 52 NELPDIEALYDDDTFSDREMAALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQE-ASKQYTK 130 (963)
T ss_dssp TTHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred hhHHHHHHHHcCCCcchHHHHHHHHHHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHH-Hhhcccc
Confidence 457888888765321 222 27888999999999998887731 11 4555555443 21 111
Q ss_pred HHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHH------cCCHHHHH----HHHhhcCCC
Q 000992 979 GLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRA------SGNWSGVL----TVAGLLKLG 1045 (1196)
Q Consensus 979 AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~------~g~w~~al----~la~~l~~~ 1045 (1196)
--.-+ .-++++..+.+..=++....+.+.+|.-+-..+...++-.+...+ ..++.+.. .++..+. +
T Consensus 131 ~~~~~~~~~id~rL~~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv-~ 209 (963)
T 4ady_A 131 DEQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTV-T 209 (963)
T ss_dssp CTTGGGSSCSCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTC-C
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccC-C
Confidence 00000 124578888888888999999999999999999999866555544 13444333 4454444 4
Q ss_pred HHHH-HHHHHHHHHHHHHcC--ChHHHHHHHHHhcCCHHHHHHHHHH---hcCHHHHHHHHH
Q 000992 1046 KDEV-AKLAQELCEELQALG--KPGEAAKIALDYCGDVTNGISLLID---ARDWEEALRVAF 1101 (1196)
Q Consensus 1046 ~~~~-~~l~~~la~~L~~~~--~~~eAa~i~~~yl~d~~~Ai~~y~~---~~~w~eA~rla~ 1101 (1196)
+++. .++++.+.+.+.+.. +|-+|.+++++ ++|.+.+.+++.+ ...---|..+|.
T Consensus 210 p~~fr~~vLr~l~~Iy~k~~~~dy~~a~~~ai~-LnD~~li~~if~~l~~~~d~l~ayQiAF 270 (963)
T 4ady_A 210 NSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVN-LNDAGLALQLFKKLKEENDEGLSAQIAF 270 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH-HTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH-cCCHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4553 567787888888777 89999999999 9999999999998 444444444443
No 425
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=91.27 E-value=1.8 Score=44.14 Aligned_cols=24 Identities=4% Similarity=-0.201 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+...|++.+|...|.+
T Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 123 VLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Confidence 334445555555555555544444
No 426
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=91.00 E-value=0.49 Score=49.07 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=13.5
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
++++......|+|++|+..|.++
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~a 30 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQT 30 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 44445555566677777666554
No 427
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=90.94 E-value=0.45 Score=45.34 Aligned_cols=22 Identities=14% Similarity=-0.068 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q 000992 1053 AQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1053 ~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
...+|..+...|+|.+|.+.|.
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
Confidence 3444444444455554444433
No 428
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=90.94 E-value=5.9 Score=48.86 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=93.4
Q ss_pred ccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHH---HHHhcChHHHHhhc-CCcH----HHHHHHHHHHHHHhcccCHHHH
Q 000992 938 YTIDLRLQRFENALKHIVSMGDSYHADCLNLM---KKYAQLFPLGLKLI-TDPA----KMEQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~---~~~~~ly~~AL~L~-~d~~----~~~~i~~~~A~~L~~~~~~~eA 1009 (1196)
|.+-..-|.||.|+++|.+.. .-.|+-+. ..+ +|....-+|+ .++. .+-.+...|..-+ ...+..+|
T Consensus 301 f~vLlLtgqFE~AI~~L~~~~---~vdAVH~AIaL~~~-gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F-~~td~~~A 375 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTFS---EMDAVHLAIGLASL-KLFKIDSSTRLTKKPKRDIRFANILANYTKSF-RYSDPRVA 375 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC---HHHHHHHHHHHHHT-TC-----------------CHHHHHHHHHTTT-TTTCHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhcC---chhHHHHHHHHHHc-CCccCCCcccccCCCcccccHHHHHHHHHHHh-hcCCHHHH
Confidence 567777899999999999873 34554444 224 5554423344 2221 2445555666555 45588899
Q ss_pred HHHHHhCCCHH---------HHH-HHHHHcCCHHHHHH-----------HHhh----cCC-C-HHHHHHHHHHHHHHHHH
Q 000992 1010 ATTYFCCSSLE---------KAM-KAYRASGNWSGVLT-----------VAGL----LKL-G-KDEVAKLAQELCEELQA 1062 (1196)
Q Consensus 1010 a~~y~~ag~~~---------kAl-~~y~~~g~w~~al~-----------la~~----l~~-~-~~~~~~l~~~la~~L~~ 1062 (1196)
..+|...+... +++ +.-.+.+.|...+- +..+ +++ + ++-++.++...|..+.+
T Consensus 376 l~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ae~ 455 (661)
T 2qx5_A 376 VEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARRADE 455 (661)
T ss_dssp HHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHHHHH
Confidence 88887664331 112 23334566666652 1111 111 2 33456788999999999
Q ss_pred cCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHH
Q 000992 1063 LGKPGEAAKIALDYCGDVTNGISLLIDARDWEEAL 1097 (1196)
Q Consensus 1063 ~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~ 1097 (1196)
.|++.+|..+|.- +|+++.|+++.++. -.+|+
T Consensus 456 ~G~~~dAi~LY~L-a~~~d~vl~lln~~--Ls~~l 487 (661)
T 2qx5_A 456 DGRIYDSILLYQL-AEEYDIVITLVNSL--LSDTL 487 (661)
T ss_dssp TTCHHHHHHHHHH-TTCHHHHHHHHHHH--HHHHH
T ss_pred CCCHHHHHHHHHH-hcCHHHHHHHHHHH--HHHHh
Confidence 9999999999888 99999999999876 45554
No 429
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=90.65 E-value=0.75 Score=45.34 Aligned_cols=19 Identities=11% Similarity=-0.069 Sum_probs=8.0
Q ss_pred HHHHHHHHHcCChHHHHHH
Q 000992 1054 QELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 1054 ~~la~~L~~~~~~~eAa~i 1072 (1196)
..+|..+...|+|.+|...
T Consensus 83 ~~lg~~~~~~g~~~~A~~~ 101 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEA 101 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHH
Confidence 3444444444444444333
No 430
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=90.63 E-value=0.76 Score=45.01 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=20.9
Q ss_pred cChHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 974 QLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 974 ~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
..|++|+++- |.. ...+...|..+...++|++|...|.++
T Consensus 8 ~~~~~al~~~--p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~a 47 (148)
T 2vgx_A 8 GTIAMLNEIS--SDT-LEQLYSLAFNQYQSGXYEDAHXVFQAL 47 (148)
T ss_dssp CSHHHHTTCC--HHH-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHcCC--Hhh-HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4455555532 222 233445566666666666666666543
No 431
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=90.33 E-value=0.54 Score=53.09 Aligned_cols=54 Identities=13% Similarity=0.003 Sum_probs=25.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1009 AATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1009 Aa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
-+.+|.+.|++++|+++|.+ |+.+- +.. ...+..+|..+...|+|.+|...|.+
T Consensus 202 la~~~~~~g~~~~A~~~~~~------al~~~------p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~ 255 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNK------ALELD------SNN-EKGLSRRGEAHLAVNDFELARADFQK 255 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHH------HHHHC------TTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH------HHHhC------CCc-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555555666666665533 23221 111 12444555555555555555555433
No 432
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=90.04 E-value=1.8 Score=50.29 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=12.0
Q ss_pred ccHHHHhhCHHHHHHHHHHc
Q 000992 938 YTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~ 957 (1196)
+.+...+|++++|+..|.++
T Consensus 254 g~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHH
Confidence 44555566666666666554
No 433
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=89.88 E-value=5.5 Score=42.17 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcChHHHHhhc-----CCc--HHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 962 HADCLNLMKKYAQLFPLGLKLI-----TDP--AKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 962 ~~~ale~~~~~~~ly~~AL~L~-----~d~--~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
+..+..++. . +.|++|+++| .+| .....++-..|.-+...++|++|...|.++
T Consensus 19 ~~~a~~~~~-~-g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 78 (261)
T 3qky_A 19 FERAMEFYN-Q-GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERF 78 (261)
T ss_dssp HHHHHHHHH-T-TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-h-CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 455555554 3 6788888776 222 233455556666666666666666666554
No 434
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=89.87 E-value=0.52 Score=51.76 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCCHH--------HHHHHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSSLE--------KAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQ 1061 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~--------kAl~~y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~ 1061 (1196)
.++..+|.-+...+++++|...|.++-... .+.-.+...+...+|+...++ +..+++. .+....+|..+.
T Consensus 152 ~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~-~~~~~~la~~l~ 230 (287)
T 3qou_A 152 EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED-AALATQLALQLH 230 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc-HHHHHHHHHHHH
Confidence 345566677777777777777777663211 001111122222222211100 0001212 235566777777
Q ss_pred HcCChHHHHHHHHH
Q 000992 1062 ALGKPGEAAKIALD 1075 (1196)
Q Consensus 1062 ~~~~~~eAa~i~~~ 1075 (1196)
..|++++|...|.+
T Consensus 231 ~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 231 QVGRNEEALELLFG 244 (287)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcccHHHHHHHHHH
Confidence 77777777777665
No 435
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=89.79 E-value=38 Score=42.20 Aligned_cols=232 Identities=7% Similarity=-0.021 Sum_probs=111.9
Q ss_pred EEEEE-EccCCCEEEEEEC-CC----cEEEEECCCCeEEEeeeecCcE----------EEEEECCCCCEEEEEeCC----
Q 000992 78 ITAFD-YLMEKEALIVGTS-SG----LLLLHSVDGNATEVVGRVEGGV----------RFISPSPDGDLLGVTTGF---- 137 (1196)
Q Consensus 78 v~~v~-~spd~~~La~as~-dG----~I~lw~~~~~~~e~vg~~~~~I----------~~~awSPDg~~LA~~s~d---- 137 (1196)
..++. ++||++.++++.+ +| +|+++|+.+++.-. +.+...+ ..++|- |++.+.+++..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~-~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK-NGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT-TCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC-CCcccccccccccccccceeeEE-CCCEEEEEeCCCCCC
Confidence 34566 8999988876533 33 58889999876521 1111111 234886 55565554321
Q ss_pred -------ceEEEEeccCceeeeeecccccCccccccCccccCCC-CeEEEEEccCCce-----EEEeeccccccCCCCEE
Q 000992 138 -------GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS-FKSPISWRGDGKY-----FATLSEFCNSSKLHKRL 204 (1196)
Q Consensus 138 -------~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~-~v~~isWspDG~~-----lAsvss~d~~~~~d~~i 204 (1196)
.+|..|.+ +.+..+- ..| |.+.+. .-....-++|+++ ++ ..+.+ .....+
T Consensus 209 ~~~~~~~~~v~~~~~-Gt~~~~~--------~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~---~~~~~~ 271 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKR-GESIEKA--------KKL----FEVPKEYIYVSAGKLLSDTISSSLIFI-SANKD---FYNYDN 271 (711)
T ss_dssp BCTTSSBCEEEEEET-TSCGGGC--------EEE----EECCTTSCEEEEEESSCTTTCSSEEEE-EEESS---SSCEEE
T ss_pred cCcCCCCCEEEEEEC-CCChHHC--------eEE----eccCCCceEEEEEEecCCCceEEEEEE-EEecc---cCceeE
Confidence 23444432 2221111 111 222122 2244555677774 33 12211 123456
Q ss_pred EEEECCC--CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC----CCCCCeEEEEeCCCe-------eEEEEEeccCC
Q 000992 205 KVWERDS--GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS----ENKCPSIVFYERNGL-------ERSSFDINEQI 271 (1196)
Q Consensus 205 rVWd~~~--G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~----~~~~~~V~~~e~nGl-------~~~~f~l~~~~ 271 (1196)
.+.+... |++.....+.+ ..+.++++|.+++....+-+ ......|...+.++. ..-+-.+....
T Consensus 272 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (711)
T 4hvt_A 272 YILDTKYKNLKLQKINMPSD---ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA 348 (711)
T ss_dssp EEEECSSSSCEEEECCSCTT---CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT
T ss_pred EEEcCCCCCCcceEeecCCc---ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC
Confidence 6667632 66555433332 23456778887775532200 012355766764431 11111122112
Q ss_pred CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCc
Q 000992 272 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 272 ~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1196)
...+.+++|..| .++++...++ ...|.+++..+..|.....+.++.... .....++++..
T Consensus 349 ~~~l~~~~~~~~-~l~~~~~~~~-~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~ 409 (711)
T 4hvt_A 349 NEVFNFISTTKD-RVFLATYDNV-VAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEE 409 (711)
T ss_dssp TEEEEEEEECSS-CEEEEEEETT-EEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSC
T ss_pred CCeEEEEEEECC-EEEEEEEECC-EEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCE
Confidence 346889999987 5666666654 234777777666653322243432222 33444555543
No 436
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=89.76 E-value=1.4 Score=44.98 Aligned_cols=102 Identities=15% Similarity=0.030 Sum_probs=58.8
Q ss_pred HHhcChHHHHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHH
Q 000992 971 KYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD 1047 (1196)
Q Consensus 971 ~~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~ 1047 (1196)
.. +.|++|++.| .++ ...++..+ +..|...|++++|++.|.+ ++.+. +..
T Consensus 18 ~~-~~~~~A~~~~~~a~~~--~~~~~~~l-------------g~~~~~~g~~~~A~~~~~~------al~~~---~~~-- 70 (213)
T 1hh8_A 18 DK-KDWKGALDAFSAVQDP--HSRICFNI-------------GCMYTILKNMTEAEKAFTR------SINRD---KHL-- 70 (213)
T ss_dssp HT-TCHHHHHHHHHTSSSC--CHHHHHHH-------------HHHHHHTTCHHHHHHHHHH------HHHHC---TTC--
T ss_pred Hh-CCHHHHHHHHHHHcCC--ChHHHHHH-------------HHHHHHcCCHHHHHHHHHH------HHHhC---ccc--
Confidence 45 7788888888 222 12233333 3445555556666555533 23221 111
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC-----------------------HHHHHHHHHHhcCHHHHHHHHH
Q 000992 1048 EVAKLAQELCEELQALGKPGEAAKIALDYCGD-----------------------VTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1048 ~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d-----------------------~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
......+|..+...|+|.+|...|.+.+.. .-.-..+|.+.++|++|+....
T Consensus 71 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 71 --AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 245667888888889999998888774331 1233456677778888866543
No 437
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=89.67 E-value=0.63 Score=56.35 Aligned_cols=109 Identities=8% Similarity=-0.062 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQA 1062 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~ 1062 (1196)
.+..+|..+...++|++|...|.++-+ +-....+|...|++++|+....+. ..+++. ......+|..+..
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 103 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH-PGIALWLGHALED 103 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH
Confidence 445556666666666666666665521 111224555666666666444321 112222 3466788999999
Q ss_pred cCChHHHHHHHHHhc----CCH---HHHHHHHHHh---cCHHHHHHHHH
Q 000992 1063 LGKPGEAAKIALDYC----GDV---TNGISLLIDA---RDWEEALRVAF 1101 (1196)
Q Consensus 1063 ~~~~~eAa~i~~~yl----~d~---~~Ai~~y~~~---~~w~eA~rla~ 1101 (1196)
.|++++|...|.+.+ ++. .....+|.+. +++++|+....
T Consensus 104 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 104 AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 999999999887743 122 2234455566 77777766443
No 438
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=89.65 E-value=1.1 Score=43.30 Aligned_cols=24 Identities=21% Similarity=-0.093 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+...|++.+|...|.+
T Consensus 83 ~~~~~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 83 GYYRRAASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 344455555555555555555443
No 439
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=89.47 E-value=1.7 Score=46.23 Aligned_cols=141 Identities=11% Similarity=0.012 Sum_probs=77.4
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCC-------CeEEEeeee-cCcEEEEEECCCCCEEEEEeCCceEEEEeccCc
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDG-------NATEVVGRV-EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~-------~~~e~vg~~-~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d 148 (1196)
.+.+|+|+|+|..-++ .+|.+.-.+..+ +.-..+|.. -.+-.++.|-|+|.+-|+ .||.|.-++.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p--- 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP--- 114 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC---
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC---
Confidence 5679999999997777 788766666544 111233321 122478999999999998 4588864432
Q ss_pred eee--eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE-----EEe--c
Q 000992 149 LLY--ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ-----ASS--E 219 (1196)
Q Consensus 149 ~~~--~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~-----~~~--e 219 (1196)
|.. ...+. .+..|..+-| ..+..|.+.|||.+.| +. + +.+.-+..-++... ++. .
T Consensus 115 P~~~~~~Wl~---~a~~vg~~gw----~~~~~lff~p~G~Lya-v~--d------g~lyr~~~P~~~~~~wl~~~~~~g~ 178 (236)
T 1tl2_A 115 PQSDTDNWIA---RATEVGSGGW----SGFKFLFFHPNGYLYA-VH--G------QQFYKALPPVSNQDNWLARATKIGQ 178 (236)
T ss_dssp CCSTTCCHHH---HSEEEECSSG----GGEEEEEECTTSCEEE-EE--T------TEEEEECCCSSTTCCHHHHCEEEES
T ss_pred CcCCCCceec---cccEeccCCC----CceEEEEECCCceEEE-Ee--C------CcEEecCCCCCCCcccccccceecc
Confidence 100 00000 0111111101 2358899999999999 65 2 33322322122100 011 0
Q ss_pred cCCCceeEEEEcCCCCeEEEE
Q 000992 220 LKAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 220 ~~~~~v~slawsPdG~~IAs~ 240 (1196)
..-..-..+.|.|+|++.++.
T Consensus 179 ~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 179 GGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp SSGGGEEEEEECTTSCEEEEE
T ss_pred CCcceEEEEEECCCCcEEEEe
Confidence 111123567799999988876
No 440
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=89.41 E-value=45 Score=40.44 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=42.1
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC-EEEEEEC------CCcEEEEE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTS------SGLLLLHS 103 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~-~La~as~------dG~I~lw~ 103 (1196)
.++.||+++.++.++.+|. .+++..|+...-+.. ....+. ...++ ..=-.+|+ .+++++. +|.|.-+|
T Consensus 116 ~~~~v~~~t~dg~l~AlD~--~TG~~~W~~~~~~~~-~~~~~~-~sP~v-~~~~~~G~~~v~vg~~~~e~~~~g~v~alD 190 (582)
T 1flg_A 116 YGDKVFFGTLDASVVALNK--NTGKVVWKKKFADHG-AGYTMT-GAPTI-VKDGKTGKVLLIHGSSGDEFGVVGRLFARD 190 (582)
T ss_dssp ETTEEEEEETTTEEEEEES--SSCCEEEEEECSCGG-GTCBCC-SCCEE-EECTTTCCEEEEECCBCGGGCCBCEEEEEC
T ss_pred ECCEEEEEeCCCEEEEEEC--CCCCEEeeecCCCCC-cCcccc-cCCEE-eCCCcCCcEEEEEeccccccCCCCEEEEEE
Confidence 4688999999999999999 778777775421100 000010 11111 10011233 4444442 67888888
Q ss_pred CCCCeEE
Q 000992 104 VDGNATE 110 (1196)
Q Consensus 104 ~~~~~~e 110 (1196)
..++++.
T Consensus 191 ~~tG~~~ 197 (582)
T 1flg_A 191 PDTGEEI 197 (582)
T ss_dssp TTTCCEE
T ss_pred CCCCCEE
Confidence 8877653
No 441
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=89.19 E-value=0.53 Score=58.76 Aligned_cols=161 Identities=14% Similarity=-0.020 Sum_probs=86.6
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcC---CCc----HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMG---DSY----HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g---~~~----~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1196)
+.++.+...+|+|++|+..|.++= ++. +..+.-+ ... +.|++|++.| .+|.. ...+..+|.-+..
T Consensus 437 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~-g~~~~A~~~~~~al~l~P~~-~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 437 LMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAE-LLT-GDYDSATKHFTEVLDTFPGE-LAPKLALAATAEL 513 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHH-TCHHHHHHHHHHHHHHSTTC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHH-HHc-CCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH
Confidence 445667777899999998887652 221 2233322 455 7788887776 24432 3344566777777
Q ss_pred ccCHHHHHHHHHhCC----C----HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcC--------C
Q 000992 1003 VKCFEDAATTYFCCS----S----LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALG--------K 1065 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ag----~----~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~--------~ 1065 (1196)
.++|++ ...|.++= + +-.--.+|...|++++|+....+. .++++. ......++..+...+ +
T Consensus 514 ~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~~~~~~~~~~~~~~~~~~~ 591 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF-TTARLTSAVTLLSGRSTSEVTEEQ 591 (681)
T ss_dssp HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH-HHHHHHHHHHTC-------CCHHH
T ss_pred cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc-HHHHHHHHHHHHccCCCCCCCHHH
Confidence 777777 66666652 1 112235677778888887655542 233333 234445555553333 3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1066 PGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1066 ~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
+.+|.+.+.....+... ....+..-++.++++...
T Consensus 592 ~~~A~~~l~~~~~~~~~--~~~l~~~ll~~~l~~~~~ 626 (681)
T 2pzi_A 592 IRDAARRVEALPPTEPR--VLQIRALVLGGALDWLKD 626 (681)
T ss_dssp HHHHHHHHHTSCTTSTT--HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCCcHH--HHHHHHHHHHHHHHHHHc
Confidence 66666665552111111 122344455666665543
No 442
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=88.86 E-value=1.2 Score=48.81 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....++..|...|+..+|...|.+
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHH
Confidence 456677788888888888777655
No 443
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=88.73 E-value=5.6 Score=46.31 Aligned_cols=133 Identities=15% Similarity=0.157 Sum_probs=81.4
Q ss_pred CCEEEEEECCCCcEEEEeccC---CC-ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-Ce------------eEE
Q 000992 201 HKRLKVWERDSGTLQASSELK---AF-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GL------------ERS 263 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~~e~~---~~-~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl------------~~~ 263 (1196)
++.||.-+..++...+.+... .. .+..+..||+|+++|..+. ++|.+.+.. |. +-.
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-------~~V~Vv~LP~~~~~~~~~~~~~~~q~~ 112 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-------NEIFVMEVPWGYSNVEDVSIQDAFQIF 112 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-------SEEEEEECCTTCSCCCCHHHHHTTEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-------CeEEEEEecCccccCccccccccccee
Confidence 478888777434333333221 22 4678999999999999876 357776644 21 111
Q ss_pred EEEecc-C--CCCcEEEEEEccCCC---eeEEEEccCCcceEEEEEecCCE--E-EEEEEE-EEec----CCcEEEEEcc
Q 000992 264 SFDINE-Q--IDSTVELLKWNCMSD---LLAAVVRFEEYDSVKICFFSNNH--W-YLKYEI-RYLR----RDGIRFMWHP 329 (1196)
Q Consensus 264 ~f~l~~-~--~~~~V~~laWSpDg~---~LAs~~~d~~~~~V~lW~~~n~~--w-ylkq~l-~~~~----~~~~~v~Wsp 329 (1196)
.|.+.. . ....|..+-|.|-|. .|++-..|. +|++|++.... - -|++.. .|.. .+..+++|.+
T Consensus 113 ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~---~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 113 HYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDD---TITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTS---CEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred EEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCC---EEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 233321 1 135699999999655 688888888 89999987511 0 122110 1221 2237788888
Q ss_pred CCCceEEEEe--cCCcE
Q 000992 330 TKPLQLICWT--LDGQI 344 (1196)
Q Consensus 330 ~~~~~L~~~~--~~g~~ 344 (1196)
++.+|.+.+ .+|.+
T Consensus 190 -~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 190 -DGLTLYCLNTTEGGDI 205 (452)
T ss_dssp -TSSCEEEEECTTSCEE
T ss_pred -CCcEEEEEecCCCCCE
Confidence 568888866 55654
No 444
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=88.62 E-value=0.84 Score=42.56 Aligned_cols=23 Identities=9% Similarity=-0.165 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
....+|..+...|++.+|...|.
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLD 96 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHH
Confidence 34445555555555555544433
No 445
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=88.59 E-value=4.1 Score=37.04 Aligned_cols=25 Identities=12% Similarity=-0.057 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.....+|..+...|++.+|...|.+
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3444555555555555555554433
No 446
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=88.59 E-value=1.1 Score=44.05 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----CH---HHHHHHHHHhcCHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCG----DV---TNGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~---~~Ai~~y~~~~~w~eA~rl 1099 (1196)
.+...+|..+...|+|.+|...+.+-+. ++ -.-..+|...++|++|+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~ 119 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEED 119 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHH
Confidence 3455556666666666666665544221 11 1223445566666666543
No 447
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=88.12 E-value=0.97 Score=46.78 Aligned_cols=45 Identities=11% Similarity=-0.016 Sum_probs=26.2
Q ss_pred HHHHHhcccCHHHHHHHHHhCCC----HHHH----HHHHHHcCCHHHHHHHHh
Q 000992 996 WADHLSDVKCFEDAATTYFCCSS----LEKA----MKAYRASGNWSGVLTVAG 1040 (1196)
Q Consensus 996 ~A~~L~~~~~~~eAa~~y~~ag~----~~kA----l~~y~~~g~w~~al~la~ 1040 (1196)
+|.-+...++|++|...|.++-. ...+ -.+|...|+|++|+....
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 112 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67777777777777777766521 1112 245566666666665443
No 448
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=88.07 E-value=4.1 Score=45.56 Aligned_cols=101 Identities=8% Similarity=-0.003 Sum_probs=61.3
Q ss_pred ccHHHHhhCHHHHHHHHHHc-CC----C---cHHHHHHHHHHHhcChHHHHhhc-----CCc-------HHHHHHHHHHH
Q 000992 938 YTIDLRLQRFENALKHIVSM-GD----S---YHADCLNLMKKYAQLFPLGLKLI-----TDP-------AKMEQVLEAWA 997 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~-g~----~---~~~~ale~~~~~~~ly~~AL~L~-----~d~-------~~~~~i~~~~A 997 (1196)
+.|..+.|++++|+++|.+. +. . -.-.+++++.+. +-.+.|.+++ .+| ...-.+.+.|-
T Consensus 107 a~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~-~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v 185 (310)
T 3mv2_B 107 ATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN-NNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYI 185 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHH
Confidence 56677788999999998886 21 1 123445666777 7788888777 244 33444555555
Q ss_pred HHHhcccCHHHHHHHHHhCC----C---HHHHHHHHHHcCCHHHHHHHH
Q 000992 998 DHLSDVKCFEDAATTYFCCS----S---LEKAMKAYRASGNWSGVLTVA 1039 (1196)
Q Consensus 998 ~~L~~~~~~~eAa~~y~~ag----~---~~kAl~~y~~~g~w~~al~la 1039 (1196)
..+...+++.+|..+|+.+. + ....+.++.+.|+|.+|..+.
T Consensus 186 ~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 186 KFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 66666667888877776642 1 122334555556666655544
No 449
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=88.06 E-value=0.57 Score=55.39 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=10.0
Q ss_pred HHHHHHhCCCHHHHHHHH
Q 000992 1009 AATTYFCCSSLEKAMKAY 1026 (1196)
Q Consensus 1009 Aa~~y~~ag~~~kAl~~y 1026 (1196)
-+..|.+.|++++|+++|
T Consensus 323 la~~~~~~g~~~~A~~~~ 340 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECC 340 (457)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHH
Confidence 345555555555555555
No 450
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=88.05 E-value=3 Score=49.74 Aligned_cols=46 Identities=2% Similarity=-0.029 Sum_probs=27.8
Q ss_pred HHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 970 KKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 970 ~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
.+. +.|++|.++| .+|.....++..||..+...+++++|..+|.+|
T Consensus 332 ~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 332 ESR-MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHT-TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc-CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444 5555555555 233322346777777777777777777777665
No 451
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=87.96 E-value=2.3 Score=46.43 Aligned_cols=52 Identities=15% Similarity=-0.045 Sum_probs=30.8
Q ss_pred HHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000992 1024 KAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1196)
Q Consensus 1024 ~~y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1196)
.+|...|+|++|+....+ +..+++. ......+|..+...|+|.+|...|.+.
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 46 LCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444433322 1223333 245667888888999999999888774
No 452
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.90 E-value=10 Score=44.76 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=41.8
Q ss_pred CCEEEEEEccCCC-EEEEEECCCcEEEEECCCCe----EE-E---ee-----eecCcEEEEEECCC----CCEEEEEe
Q 000992 76 DSITAFDYLMEKE-ALIVGTSSGLLLLHSVDGNA----TE-V---VG-----RVEGGVRFISPSPD----GDLLGVTT 135 (1196)
Q Consensus 76 ~~v~~v~~spd~~-~La~as~dG~I~lw~~~~~~----~e-~---vg-----~~~~~I~~~awSPD----g~~LA~~s 135 (1196)
..+++|+|.|||. .|.++...|.|++++.++.. +. + +. .-+++...++|+|| |.+-++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 3689999999996 45667889999999876431 11 1 11 11468999999997 55555544
No 453
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=87.89 E-value=6.8 Score=45.88 Aligned_cols=90 Identities=17% Similarity=0.300 Sum_probs=61.1
Q ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHH-HHHcCCh------HHHHHHHHHhcCCHHHHH
Q 000992 1012 TYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEE-LQALGKP------GEAAKIALDYCGDVTNGI 1084 (1196)
Q Consensus 1012 ~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~-L~~~~~~------~eAa~i~~~yl~d~~~Ai 1084 (1196)
-+...|+.++|+++..+.+.|-.|+-||... +++..+++..+++.. +.. +.+ .-...+|.-+.|+.+.+|
T Consensus 159 ~~Ll~G~~e~Av~~al~~~lwa~ALlLAs~~--g~e~~~~V~~~y~~~~~~~-~~~~~~~~~~~Lr~Ly~v~sGn~~~~V 235 (441)
T 3mzk_B 159 AFLQTGNHDEALRLALSKRDYAIALLVGSLM--GKDRWSEVIQKYLYEGFTA-GPNDQKELAHFLLLIFQVFVGNSKMAI 235 (441)
T ss_dssp HHHHTTCHHHHHHHHHHTTCHHHHHHHHHTS--CHHHHHHHHHHHHHCC-------CTHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHhCCcHHHHHHHHHhc--CHHHHHHHHHHHHHhhccc-CCccccccccHHHHHHHHHcCCHHHHH
Confidence 3456799999999999999999999999875 555444444333321 110 111 113356677789999999
Q ss_pred HHHH--------HhcCHHHHHHHHHhcC
Q 000992 1085 SLLI--------DARDWEEALRVAFMHR 1104 (1196)
Q Consensus 1085 ~~y~--------~~~~w~eA~rla~~~~ 1104 (1196)
+.+. ...+|.|.+.+.-.+.
T Consensus 236 ~~l~~~~~~~~~~l~~Wre~lA~IlsN~ 263 (441)
T 3mzk_B 236 KSFYTNNETSQWASENWKSIVAAVLINI 263 (441)
T ss_dssp HHHHHCHHHHHHHHHSHHHHHHHHHHTS
T ss_pred HHhccCCccccchHhHHHHHHHHHHhCC
Confidence 9873 3459999988776654
No 454
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=87.79 E-value=42 Score=38.07 Aligned_cols=129 Identities=12% Similarity=-0.005 Sum_probs=72.4
Q ss_pred CCEEEEEECCCCcEEEEeccCCCceeEEEEcCC----CCe--EEEEecCCCCCCCCeEEEEeCC--CeeEEEEEecc---
Q 000992 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMPS----GAN--IAAVYDRKSENKCPSIVFYERN--GLERSSFDINE--- 269 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd----G~~--IAs~s~d~~~~~~~~V~~~e~n--Gl~~~~f~l~~--- 269 (1196)
.+-+.|||. +|+++..... +..+.+..+|+ |+. ||.++... +..++|.+|+.+ ...... +..
T Consensus 49 ~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~--~~~n~l~vf~iDp~~~~l~~--i~~~~~ 121 (355)
T 3amr_A 49 KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRS--EGKNTIEIYAIDGKNGTLQS--MTDPDH 121 (355)
T ss_dssp TTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECS--TTCCEEEEEEECTTTCCEEE--CSCTTS
T ss_pred CCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCC--CCCCeEEEEEECCCCCceee--cccccc
Confidence 467999999 9999988753 56788888884 222 45554421 003689999653 111111 111
Q ss_pred C--CC-CcEEEEEE--ccC-CC-eeEEEEccCCcceEEEEEec---CCEE--EEEEEEEEecCCcEEEEEccCCCceEEE
Q 000992 270 Q--ID-STVELLKW--NCM-SD-LLAAVVRFEEYDSVKICFFS---NNHW--YLKYEIRYLRRDGIRFMWHPTKPLQLIC 337 (1196)
Q Consensus 270 ~--~~-~~V~~laW--SpD-g~-~LAs~~~d~~~~~V~lW~~~---n~~w--ylkq~l~~~~~~~~~v~Wsp~~~~~L~~ 337 (1196)
+ .. ..+..||. +|+ |+ ++.+...++ .+..|.+. +... .+..++... ...-.+.-+++... |.+
T Consensus 122 pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G---~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~-Lyv 196 (355)
T 3amr_A 122 PIATAINEVYGFTLYHSQKTGKYYAMVTGKEG---EFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGR-LYI 196 (355)
T ss_dssp CEECCCSSCCCEEEEECTTTCCEEEEEECSSS---EEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTE-EEE
T ss_pred CcCCCCCCeeEEEEEecCCCCcEEEEEECCCC---eEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCe-EEE
Confidence 1 11 45777888 885 44 344444444 67777763 3322 222333332 12255667777664 677
Q ss_pred EecC
Q 000992 338 WTLD 341 (1196)
Q Consensus 338 ~~~~ 341 (1196)
.-.+
T Consensus 197 ~eEd 200 (355)
T 3amr_A 197 AEED 200 (355)
T ss_dssp EETT
T ss_pred eccc
Confidence 6654
No 455
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=87.16 E-value=2.9 Score=39.99 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=8.1
Q ss_pred HHHHHHhcccCHHHHHHHH
Q 000992 995 AWADHLSDVKCFEDAATTY 1013 (1196)
Q Consensus 995 ~~A~~L~~~~~~~eAa~~y 1013 (1196)
..|..+...++|++|..+|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~ 41 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIF 41 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHH
Confidence 3344444444444444443
No 456
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=87.12 E-value=3.5 Score=38.90 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----CH---
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG----DV--- 1080 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~--- 1080 (1196)
+-+..|.+.|++++|+++|.+ |+.+- +.+ ......+|..+...|++.+|...|.+-+. ++
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~------al~~~---p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNE------AVKRD---PEN----AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH------HHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH------HHHhC---CCC----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 445566666777777776633 33321 112 24566777788888888888877766321 11
Q ss_pred HHHHHHHHHhcCHHHHHHH
Q 000992 1081 TNGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1081 ~~Ai~~y~~~~~w~eA~rl 1099 (1196)
-.-..+|.+.++|++|+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~ 103 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRA 103 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHH
Confidence 1223456677777777654
No 457
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=87.05 E-value=1.7 Score=49.89 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.-+..|.+.|++++|+++|.++ +. ++++. ...+..+|..+...|+|++|...|.+
T Consensus 278 nla~~~~~~g~~~~A~~~~~~a------l~------~~p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 278 NIGACKLKMSDWQGAVDSCLEA------LE------IDPSN-TKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HT------TCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHH------HH------hCchh-HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3345555556666666555332 21 12211 23445566666666666665554333
No 458
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=86.84 E-value=3.5 Score=43.78 Aligned_cols=107 Identities=18% Similarity=0.156 Sum_probs=65.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccccc-ceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA-SIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.+++|++++. ||.+ .++.+++.+. .+...+ |- .. ...+-.... ..=.++.|-|+|..-++ .||.|.
T Consensus 42 ~~~~laf~P~G~-LYaV-~~G~Ly~~~~--~t~~~~~W~-~s-~t~IG~~Gw---~~F~a~~fD~~G~LYav--~dG~iy 110 (236)
T 1tl2_A 42 NFKFLFLSPGGE-LYGV-LNDKIYKGTP--PTHDNDNWM-GR-AKKIGNGGW---NQFQFLFFDPNGYLYAV--SKDKLY 110 (236)
T ss_dssp TCSEEEECTTSC-EEEE-ETTEEEEESC--CCSTTCCHH-HH-CEEEECSCG---GGCSEEEECTTSCEEEE--ETTEEE
T ss_pred cceeEEECCCcc-EEEE-eCCeEEEECC--CCCCccccc-cc-ccEeccccc---ccceEEEECCCCCEEEe--CCCEEE
Confidence 567899999555 8888 6666999887 332211 10 00 000000000 00157888999988877 569998
Q ss_pred EEECCC--C-----eEEEeeeec-CcEEEEEECCCCCEEEEEeCCceEE
Q 000992 101 LHSVDG--N-----ATEVVGRVE-GGVRFISPSPDGDLLGVTTGFGQIL 141 (1196)
Q Consensus 101 lw~~~~--~-----~~e~vg~~~-~~I~~~awSPDg~~LA~~s~d~tV~ 141 (1196)
-++..+ . .-..+|... ..+.++.+.|||.+-|+. |+.+.
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 888743 1 113444311 458999999999999987 66653
No 459
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=86.82 E-value=66 Score=39.32 Aligned_cols=110 Identities=13% Similarity=-0.044 Sum_probs=69.9
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE--CCCc
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT--SSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as--~dG~ 98 (1196)
.+.++|+|..++.||.+.. .+.|...++ ..+.. .+ +.... ...+.+|++.|.+..|..+. ..+.
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~--dG~~~--~~------l~~~~---l~~P~~Iavdp~~g~ly~tD~g~~~~ 151 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNL--DGSLR--KV------LFWQE---LDQPRAIALDPSSGFMYWTDWGEVPK 151 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEET--TSCSC--EE------EECSS---CSCCCCEEEETTTTEEEEEECSSSCE
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEEC--CCCCE--EE------EEeCC---CCCCceEEEecCCCeEEEeccCCCCE
Confidence 6789999999999999865 556777777 22221 11 11111 24678899999866665554 2467
Q ss_pred EEEEECCCCeEEEee-eecCcEEEEEECCCCCEEEEEe-CCceEEEEe
Q 000992 99 LLLHSVDGNATEVVG-RVEGGVRFISPSPDGDLLGVTT-GFGQILVMT 144 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg-~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~ 144 (1196)
|...+.++.....+. ..-..-..++++|+++.|-.+. ..+.|...+
T Consensus 152 I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~ 199 (619)
T 3s94_A 152 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 199 (619)
T ss_dssp EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred EEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence 777788875444332 2124568899999888777774 344555443
No 460
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=86.59 E-value=1.2 Score=40.33 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhc----CCH---HHHHHHHHHhcCHHHHHHH
Q 000992 1053 AQELCEELQALGKPGEAAKIALDYC----GDV---TNGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1053 ~~~la~~L~~~~~~~eAa~i~~~yl----~d~---~~Ai~~y~~~~~w~eA~rl 1099 (1196)
...+|..+...|++.+|..++.+.+ .+. -....+|.+.+++++|+..
T Consensus 46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (125)
T 1na0_A 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 99 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3444555555555555555554421 111 1223445555555555543
No 461
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=86.29 E-value=2.7 Score=41.89 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHh
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDY 1076 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1196)
.....+|..+...|++.+|...|.+.
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 35556777777777777777776663
No 462
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=86.15 E-value=1.3 Score=39.66 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=9.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHH
Q 000992 1054 QELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1054 ~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..+|..+...|++.+|...|.+
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444444444444444333
No 463
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=86.11 E-value=2.5 Score=39.44 Aligned_cols=20 Identities=15% Similarity=-0.142 Sum_probs=9.6
Q ss_pred HHHHHHHHHHcCChHHHHHH
Q 000992 1053 AQELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 1053 ~~~la~~L~~~~~~~eAa~i 1072 (1196)
...+|..+...|++.+|...
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~ 99 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIAN 99 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34445445445555544444
No 464
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=85.89 E-value=72 Score=38.94 Aligned_cols=195 Identities=10% Similarity=0.003 Sum_probs=107.4
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I 99 (1196)
.+.+++||+.++.||.+.- .+.|+.++++ .......+ +..+ -..+.++++.+.++.|..+ +..+.|
T Consensus 41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~--g~~~~~~v--~~~~--------~~~P~GlAvD~~~~~ly~~d~~~~~I 108 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFN--KTESVQNV--VVSG--------LLSPDGLACDWLGEKLYWTDSETNRI 108 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC-------CEEE--ECSS--------CSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEEEEEeCCCEEEEEECCCCeEEEEEcc--CCCceEEE--EeCC--------CCCcCeEEEEecCCEEEEEeCCCCEE
Confidence 6788999999999999854 5578888883 22110111 1111 1478999999977766655 456889
Q ss_pred EEEECCCCeEEEee-eecCcEEEEEECCCCCEEEEEeC--CceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVG-RVEGGVRFISPSPDGDLLGVTTG--FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg-~~~~~I~~~awSPDg~~LA~~s~--d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.+.+.++.....+. ..-..-..+++.|.+..|-.+.. .+.|...+.++....... ... -..-
T Consensus 109 ~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~--~~~-------------~~~P 173 (619)
T 3s94_A 109 EVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII--NSE-------------IYWP 173 (619)
T ss_dssp EEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--CSS-------------CSSE
T ss_pred EEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE--eCC-------------CCCC
Confidence 99999986554332 21234677889887666655542 234443333332211111 000 0123
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..|+..++++.|- ++- .....|...|. +|.-..+. ++.-.....|++-++ .|..+... ...|...
T Consensus 174 ~Glald~~~~~LY-~aD-----~~~~~I~~~~~-dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~-----~~~V~~~ 239 (619)
T 3s94_A 174 NGLTLDYEEQKLY-WAD-----AKLNFIHKSNL-DGTNRQAVVKGSLPHPFALTLFED--ILYWTDWS-----THSILAC 239 (619)
T ss_dssp EEEEEETTTTEEE-EEE-----TTTCCEEEESS-SCCEEC---------CCCEEESSS--EEEEECTT-----TCSEEEE
T ss_pred cEEEEEccCCEEE-EEe-----CCCCeEEEecC-CCCccEEEEeCCCCCceEEEEeCC--EEEEecCC-----CCEEEEE
Confidence 6899998766554 342 23578888898 66544332 211112245666555 44444332 2356555
Q ss_pred eC
Q 000992 256 ER 257 (1196)
Q Consensus 256 e~ 257 (1196)
++
T Consensus 240 d~ 241 (619)
T 3s94_A 240 NK 241 (619)
T ss_dssp ES
T ss_pred EC
Confidence 54
No 465
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=85.30 E-value=12 Score=43.61 Aligned_cols=122 Identities=15% Similarity=0.148 Sum_probs=69.0
Q ss_pred cEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEE---------EEEEEEec-----CC-cEEEEEccCCCc--eE
Q 000992 274 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYL---------KYEIRYLR-----RD-GIRFMWHPTKPL--QL 335 (1196)
Q Consensus 274 ~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wyl---------kq~l~~~~-----~~-~~~v~Wsp~~~~--~L 335 (1196)
.|..+.-||+|++||..+... |.+-.+. .++-.- ...+...+ .. ...+.|||-+.. +|
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~----V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~L 142 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNE----IFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCI 142 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSE----EEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEE
T ss_pred ceeEEEECCCCCEEEEecCCe----EEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeE
Confidence 578899999999999997664 8887776 221100 01111111 12 277889998764 78
Q ss_pred EEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEE--
Q 000992 336 ICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAIL-- 412 (1196)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~-- 412 (1196)
.+.+.++.+..|+..-+ . +.-. + |+.. .+. +.+ .....|.+++|+++| =.|-+++
T Consensus 143 VVLtsD~~Ir~yDl~~s--~-~~P~--~----------L~k~---~~~--fg~d~~~~ev~S~~Fg~~~--lTLYvl~~t 200 (452)
T 3pbp_A 143 VVLKEDDTITMFDILNS--Q-EKPI--V----------LNKP---NNS--FGLDARVNDITDLEFSKDG--LTLYCLNTT 200 (452)
T ss_dssp EEEETTSCEEEEETTCT--T-SCCE--E----------ESCC---CSE--EESCSSCCCEEEEEECTTS--SCEEEEECT
T ss_pred EEEecCCEEEEEEcccC--C-CCCc--c----------hhcc---ccc--cCCCcccceEEEEEEcCCC--cEEEEEecC
Confidence 88888887764443210 0 1000 1 1100 010 111 122468899999987 5666655
Q ss_pred CCCcEEEEe
Q 000992 413 SDGCLCVVD 421 (1196)
Q Consensus 413 ~dg~v~lw~ 421 (1196)
.+|.|+-.-
T Consensus 201 ~~GDIYAlc 209 (452)
T 3pbp_A 201 EGGDIFAFY 209 (452)
T ss_dssp TSCEEEEES
T ss_pred CCCCEEEEC
Confidence 667765443
No 466
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.93 E-value=1.3 Score=41.88 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 000992 1053 AQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1053 ~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
...+|..+...|++.+|...|.+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555544433
No 467
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=84.77 E-value=67 Score=37.57 Aligned_cols=238 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred ccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCee
Q 000992 281 NCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENST 360 (1196)
Q Consensus 281 SpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~ 360 (1196)
+|..++||.-.... +|++++.. ...|...+....+..|.|. +..+
T Consensus 74 nP~~~iiALrag~~----lQiFnle~-------------------------K~klks~~~~e~VvfWkWi------s~~~ 118 (494)
T 1bpo_A 74 NPASKVIALKAGKT----LQIFNIEM-------------------------KSKMKAHTMTDDVTFWKWI------SLNT 118 (494)
T ss_dssp CSSSSCEEEEETTE----EEEEETTT-------------------------TEEEEEEECSSCCCEEEEE------ETTE
T ss_pred CCCCcEEEEecCCe----EEEEchHH-------------------------hhhhcceecCCCceEEEec------CCCe
Q ss_pred EEEEcCCEEEEeeccccCCCCCceeeeecCCCC-EEEEEEecCCCCCEEEEEECC-------CcEEEEeCCCCCcccccc
Q 000992 361 ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTA-VTEMAFYSKSSKNCLAAILSD-------GCLCVVDLPAPDMLEDLE 432 (1196)
Q Consensus 361 v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~-V~~Vafspdg~~~~lAs~~~d-------g~v~lw~~~~~~~~~~~~ 432 (1196)
.+.+-++.|.-|++.+...|-.|..+.-.+.+. |..-.-+++. +.++..+-. |.+.||..+ ....+.+.
T Consensus 119 l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~--kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ie 195 (494)
T 1bpo_A 119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIE 195 (494)
T ss_dssp EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTS--SEEEEEEEEEETTEEEEEEEEEEST-TCCEEEEC
T ss_pred EEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCC--CeEEEEeecccCCcccceEEEeecc-ccccchhe
Q ss_pred CCceeeeeecccccCCcEEEEEEecCC-----eEEEEEecCCC-CceEEEEeeccCCccccchhhhhhhhcccccccccc
Q 000992 433 GTEFVVEACISETAFGSVIHLIWLGSH-----LLLSVSHHGPR-HSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLL 506 (1196)
Q Consensus 433 g~~~~~~~~~~~~~~~~v~~l~~~~d~-----~lla~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (1196)
|| ...-..+--+| ++++.+..... ..+-+..++..+.+...|-.+-+.+.--++..
T Consensus 196 Gh--------------aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~---- 257 (494)
T 1bpo_A 196 GH--------------AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ---- 257 (494)
T ss_dssp CS--------------EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST----
T ss_pred ee--------------eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc----
Q ss_pred cccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecCCCCC
Q 000992 507 TCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPL 586 (1196)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~ 586 (1196)
+.--+++..|+ ..+.+|+.+.-|-++.|+..+ +..+---..|+..-.+......
T Consensus 258 ---------------~DFPvamqvs~-kygviyviTK~G~i~lyDleT--------gt~i~~nrIs~~~iF~t~~~~~-- 311 (494)
T 1bpo_A 258 ---------------NDFPVAMQISE-KHDVVFLITKYGYIHLYDLET--------GTCIYMNRISGETIFVTAPHEA-- 311 (494)
T ss_dssp ---------------TCCEEEEEEET-TTTEEEEEETTSEEEEEETTT--------CCEEEEEECCSSCEEEEEEETT--
T ss_pred ---------------cCceeEEEecc-cCCEEEEEecCceEEEEeccc--------ceeeeeecccCCceEEecccCC--
Q ss_pred ccEEEEEcCCCceE
Q 000992 587 KPLLFGLDDGGRLH 600 (1196)
Q Consensus 587 ~~~~~gL~~~~~L~ 600 (1196)
..-++|+.++|+.+
T Consensus 312 ~~Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 312 TAGIIGVNRKGQVL 325 (494)
T ss_dssp TTEEEEEETTCEEE
T ss_pred CCcEEEEccCceEE
No 468
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=84.40 E-value=1.5 Score=49.34 Aligned_cols=80 Identities=13% Similarity=-0.025 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCC----HH----HHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSS----LE----KAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQ 1061 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~----~~----kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~ 1061 (1196)
.++..+|.-+...++|++|...|.++=. .. ..-.+|...|+|++|+....+. .++++. ......++..+.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-KAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 4555556666666666666666655411 11 1124455555555555333221 111111 235566777777
Q ss_pred HcCChHHHHH
Q 000992 1062 ALGKPGEAAK 1071 (1196)
Q Consensus 1062 ~~~~~~eAa~ 1071 (1196)
..|++.+|.+
T Consensus 276 ~~~~~~~a~~ 285 (336)
T 1p5q_A 276 RIRRQLAREK 285 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7778877744
No 469
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=84.39 E-value=59 Score=36.62 Aligned_cols=238 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred ccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCee
Q 000992 281 NCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENST 360 (1196)
Q Consensus 281 SpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~ 360 (1196)
+|..++||.-. .. ++|++++.. ...|...+....+..|.|. +..+
T Consensus 75 nP~~~ViALra-g~---~LQiFnlet-------------------------K~klks~~~~e~VvfWkWi------s~~~ 119 (365)
T 2xzh_A 75 NPASKVIALKA-GK---TLQIFNIEM-------------------------KSKMKAHTMTDDVTFWKWI------SLNT 119 (365)
T ss_dssp CSSSSEEEEEE-TT---EEEEEETTT-------------------------TEEEEEEECSSCEEEEEEC------SSSE
T ss_pred CCCccEEEEec-CC---eEEEechHH-------------------------hhhhcceecCCccEEEEec------CCCe
Q ss_pred EEEEcCCEEEEeeccccCCCCCceeeeecCCCC-EEEEEEecCCCCCEEEEEECC-------CcEEEEeCCCCCcccccc
Q 000992 361 ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTA-VTEMAFYSKSSKNCLAAILSD-------GCLCVVDLPAPDMLEDLE 432 (1196)
Q Consensus 361 v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~-V~~Vafspdg~~~~lAs~~~d-------g~v~lw~~~~~~~~~~~~ 432 (1196)
.+.+-++.+.-|++.....|-.|..+.-.+.+. |..-.-+++. +.++..+-. |.+.||..+ ....+.+.
T Consensus 120 L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~--kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ie 196 (365)
T 2xzh_A 120 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIE 196 (365)
T ss_dssp EEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTS--CEEEEEEEEEETTEEEEEEEEEETT-TTEEEEEC
T ss_pred EEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCC--CEEEEEeEeccCCccceeEEEEeec-ccccceee
Q ss_pred CCceeeeeecccccCCcEEEEEEecCCe-----EEEEEecCCC-CceEEEEeeccCCccccchhhhhhhhcccccccccc
Q 000992 433 GTEFVVEACISETAFGSVIHLIWLGSHL-----LLSVSHHGPR-HSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLL 506 (1196)
Q Consensus 433 g~~~~~~~~~~~~~~~~v~~l~~~~d~~-----lla~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (1196)
|| ...-..+-.+|. +++.+..... ..+-+.+++..+.+...|-.+-+.+.--++..
T Consensus 197 Gh--------------aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~---- 258 (365)
T 2xzh_A 197 GH--------------AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ---- 258 (365)
T ss_dssp CS--------------EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCT----
T ss_pred ee--------------eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCcccc----
Q ss_pred cccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecCCCCC
Q 000992 507 TCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPL 586 (1196)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~ 586 (1196)
++--+++..|. ..+.+|+.+.-|-++.|+..+ +..+---..|+..-.+....+.
T Consensus 259 ---------------~DFPVamqvs~-kygviyviTK~G~ihlyDleT--------gt~i~~nrIS~d~iF~ta~~~~-- 312 (365)
T 2xzh_A 259 ---------------NDFPVAMQISE-KHDVVFLITKYGYIHLYDLET--------GTCIYMNRISGETIFVTAPHEA-- 312 (365)
T ss_dssp ---------------TCCEEEEEEET-TTTEEEEEETTSEEEEEETTT--------CCEEEEEECCSSCEEEEEEEGG--
T ss_pred ---------------CCceEEEEecc-cCCEEEEEeCCcEEEEEEccc--------CcEEEEeccCCCceEEecccCC--
Q ss_pred ccEEEEEcCCCceE
Q 000992 587 KPLLFGLDDGGRLH 600 (1196)
Q Consensus 587 ~~~~~gL~~~~~L~ 600 (1196)
..-++|+.++|+.+
T Consensus 313 ~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 313 TAGIIGVNRKGQVL 326 (365)
T ss_dssp GTEEEEEETTCEEE
T ss_pred CCcEEEEcCCCEEE
No 470
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=84.30 E-value=5.2 Score=38.98 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCC
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSS 1018 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~ 1018 (1196)
...+...|..+..+++|++|...|.++=.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~ 39 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALT 39 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555667777777777777777766543
No 471
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.11 E-value=6.1 Score=36.94 Aligned_cols=51 Identities=20% Similarity=0.049 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhc----CCH---HHHHHHHHHhcCHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALDYC----GDV---TNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~yl----~d~---~~Ai~~y~~~~~w~eA~rla 1100 (1196)
......+|..+...|+|.+|...|.+.+ .+. -....+|...++|++|+...
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 122 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDL 122 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456667777777788888777766532 121 12234556666666665543
No 472
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=84.11 E-value=3.3 Score=48.76 Aligned_cols=26 Identities=8% Similarity=-0.046 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
.++..+|.-+...++|++|...|.++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44445555555556666665555543
No 473
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=83.95 E-value=6 Score=45.51 Aligned_cols=78 Identities=12% Similarity=0.083 Sum_probs=41.7
Q ss_pred hhcccHHHHhhC-HHHHHHHHHHc---CCCcH----HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHh
Q 000992 935 LMRYTIDLRLQR-FENALKHIVSM---GDSYH----ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLS 1001 (1196)
Q Consensus 935 ~~r~~Id~~L~r-y~~Al~~l~~~---g~~~~----~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~ 1001 (1196)
..++.+...+|+ |++|+..|.++ .+... ..+ ..+... +.|++|++.| .+|... .++...|.-+.
T Consensus 135 ~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g-~~~~~~-g~~~eAl~~~~kal~ldP~~~-~a~~~lg~~~~ 211 (382)
T 2h6f_A 135 HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR-VLVEWL-RDPSQELEFIADILNQDAKNY-HAWQHRQWVIQ 211 (382)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHH-TCCTTHHHHHHHHHHHCTTCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHc-cCHHHHHHHHHHHHHhCccCH-HHHHHHHHHHH
Confidence 344566677887 99999888765 22211 222 123555 6777777766 355433 23334444444
Q ss_pred cccCHHHHHHHHHh
Q 000992 1002 DVKCFEDAATTYFC 1015 (1196)
Q Consensus 1002 ~~~~~~eAa~~y~~ 1015 (1196)
..++|++|...|.+
T Consensus 212 ~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 212 EFKLWDNELQYVDQ 225 (382)
T ss_dssp HHTCCTTHHHHHHH
T ss_pred HcCChHHHHHHHHH
Confidence 44444444444433
No 474
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=83.60 E-value=2.3 Score=38.76 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=7.2
Q ss_pred HHHHHHHHcCChHHHHHH
Q 000992 1055 ELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 1055 ~la~~L~~~~~~~eAa~i 1072 (1196)
.+|..+...|++.+|...
T Consensus 85 ~~~~~~~~~~~~~~A~~~ 102 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAY 102 (131)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHH
Confidence 334444444444444333
No 475
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=83.40 E-value=1.2 Score=41.10 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=10.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 000992 1053 AQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1053 ~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
...+|..+...|++.+|...|.+
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444445555555444433
No 476
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=83.23 E-value=7.6 Score=36.49 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+...|+|.+|...|.+
T Consensus 44 ~~~nlg~~~~~~~~~~~A~~~~~~ 67 (127)
T 4gcn_A 44 FYNNKAAVYFEEKKFAECVQFCEK 67 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHH
Confidence 444556556666666666555443
No 477
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=83.14 E-value=7.9 Score=35.63 Aligned_cols=81 Identities=21% Similarity=0.148 Sum_probs=47.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----CH--
Q 000992 1007 EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG----DV-- 1080 (1196)
Q Consensus 1007 ~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~-- 1080 (1196)
..-+..|...|++++|++.|.+ ++.+. +.+ ......+|..+...|+|.+|...|.+-+. +.
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~------al~~~---p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTE------MIKRA---PED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH------HHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHH------HHHhC---CCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 4445566666777777776643 33322 111 24566778888888888888887766331 11
Q ss_pred -HHHHHHHHHhcCHHHHHHHH
Q 000992 1081 -TNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1081 -~~Ai~~y~~~~~w~eA~rla 1100 (1196)
-.-..+|...++|++|+...
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~ 95 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETL 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHH
Confidence 12334566667777776543
No 478
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=83.14 E-value=2.5 Score=48.70 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=41.9
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc---CCCcHHHHH----HHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM---GDSYHADCL----NLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~---g~~~~~~al----e~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1196)
..+..+...+|+|++|+..|.++ .+.. -.|. ..+... +.|++|++.| .+|.. ...+...|.-|..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-~~a~~~lg~~~~~~-g~~~eAl~~~~~al~l~P~~-~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEF-KLWDNELQYVDQLLKEDVRN-NSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccC-HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 34456677789999999988765 2221 1221 233566 7888888877 35542 3445455555555
Q ss_pred -ccCHHHH
Q 000992 1003 -VKCFEDA 1009 (1196)
Q Consensus 1003 -~~~~~eA 1009 (1196)
.+.+++|
T Consensus 247 l~~~~~eA 254 (382)
T 2h6f_A 247 TTGYNDRA 254 (382)
T ss_dssp TTCSCSHH
T ss_pred hcCcchHH
Confidence 3333554
No 479
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=82.80 E-value=4.3 Score=44.75 Aligned_cols=109 Identities=8% Similarity=0.007 Sum_probs=59.3
Q ss_pred HHhhCHHHHHHHHHHcCCCcHH------HHHHHHHHHhcChHHHHhhc----CCcHHH--HHHHHHHHHHHhcccCHHHH
Q 000992 942 LRLQRFENALKHIVSMGDSYHA------DCLNLMKKYAQLFPLGLKLI----TDPAKM--EQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~~g~~~~~------~ale~~~~~~~ly~~AL~L~----~d~~~~--~~i~~~~A~~L~~~~~~~eA 1009 (1196)
.-.|+|++|.+.|..+-....+ .++ +..+. +.|++|+..+ ..+... ..++- -.
T Consensus 113 ~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~-l~~~~-~r~~dA~~~l~~a~~~~d~~~~~~a~~-------------~L 177 (282)
T 4f3v_A 113 AAQGNYADAMEALEAAPVAGSEHLVAWMKAV-VYGAA-ERWTDVIDQVKSAGKWPDKFLAGAAGV-------------AH 177 (282)
T ss_dssp HHHTCHHHHHHHHTSSCCTTCHHHHHHHHHH-HHHHT-TCHHHHHHHHTTGGGCSCHHHHHHHHH-------------HH
T ss_pred HHCCCHHHHHHHHHHHHhcCCchHHHHHHHH-HHHHc-CCHHHHHHHHHHhhccCCcccHHHHHH-------------HH
Confidence 3378888888888766321122 222 22444 6677777766 111111 11222 22
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+.++...|++++|+++|.++. .-+.++....+....+|-.|.+.|+..+|..+|.+
T Consensus 178 G~al~~LG~~~eAl~~l~~a~----------~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEAN----------DSPAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH----------TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHh----------cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445566666666666665331 10111221234556778888889999999888776
No 480
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=82.77 E-value=9.9 Score=36.10 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc----CCH---
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC----GDV--- 1080 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl----~d~--- 1080 (1196)
.-+..|...|++++|++.|.+ ++.+- +.+ ......+|..+...|+|.+|...|.+-+ +++
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~------al~~~---p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQA------LCMLD---HYD----ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH------HHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHHccHHHHHHHHHH------HHHhC---Ccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 345667777888888888743 33311 212 2456678888888999999988887732 222
Q ss_pred HHHHHHHHHhcCHHHHHHHHH
Q 000992 1081 TNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1081 ~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
-....+|...++|++|+....
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 234456778888888876543
No 481
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=82.57 E-value=6.8 Score=38.16 Aligned_cols=78 Identities=17% Similarity=0.077 Sum_probs=42.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----CH---H
Q 000992 1009 AATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG----DV---T 1081 (1196)
Q Consensus 1009 Aa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~---~ 1081 (1196)
-+..|...|++++|+++|.+ ++.+... + ......+|..+...|+|.+|...|.+-+. +. -
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~------al~~~p~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQ------ALSIAPA---N----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHH------HHHHSTT---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH------HHHhCCc---C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34445555666666665533 2332111 1 24566777777788888888877766321 11 2
Q ss_pred HHHHHHHHhcCHHHHHHH
Q 000992 1082 NGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1082 ~Ai~~y~~~~~w~eA~rl 1099 (1196)
.-..+|.+.++|++|+..
T Consensus 84 ~lg~~~~~~g~~~~A~~~ 101 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEA 101 (164)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHH
Confidence 233455566666666553
No 482
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.54 E-value=3.6 Score=41.53 Aligned_cols=50 Identities=24% Similarity=0.182 Sum_probs=38.5
Q ss_pred HHHHHHHhcChHHHHhhc--------C-----CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 966 LNLMKKYAQLFPLGLKLI--------T-----DPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 966 le~~~~~~~ly~~AL~L~--------~-----d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
++..-++ +||+-|.-++ . .|...-+++-.+|+-+..+++|..|...|.+|
T Consensus 27 ik~L~d~-~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 27 VRDMAAA-GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4445566 7888877654 1 24456678889999999999999999999885
No 483
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=82.46 E-value=15 Score=32.64 Aligned_cols=89 Identities=13% Similarity=0.121 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHH
Q 000992 986 PAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQEL 1056 (1196)
Q Consensus 986 ~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~l 1056 (1196)
|......+...|..+...++|++|..+|.++-. +-....+|...|++++|+....+. ...+.. ......+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l 83 (125)
T 1na0_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNL 83 (125)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHHH
Confidence 333345667788888888999999888877621 122346677788888887655432 101111 2334455
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 000992 1057 CEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1057 a~~L~~~~~~~eAa~i~~~ 1075 (1196)
+..+...|++.+|...|.+
T Consensus 84 a~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHH
Confidence 5555555555555555443
No 484
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=81.52 E-value=3.8 Score=39.31 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=15.2
Q ss_pred hhhcccHHHHhhCHHHHHHHHHHc
Q 000992 934 LLMRYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 934 ~~~r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
....+.+....|+|++|+.+|.++
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~a 39 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQA 39 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 344455556677777777776654
No 485
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=81.51 E-value=13 Score=45.01 Aligned_cols=112 Identities=12% Similarity=0.004 Sum_probs=67.4
Q ss_pred ceeEEeeecCCCEEEEEeCC----------------------CcEEEEeccccc---ccccceeecc---ccc-----cc
Q 000992 22 ILQFSALDIEQNRLFFASSA----------------------NNIYSAQLSSFQ---NERASIKTAI---SAE-----IE 68 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~----------------------~~i~~~~~~~~~---~~~~~~~~~~---~~~-----l~ 68 (1196)
.+..+++++.+..||++..+ ++|++|...... ....|.+--+ |.. ..
T Consensus 385 RpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~~ 464 (592)
T 4a9v_A 385 RPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKG 464 (592)
T ss_dssp CEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGGG
T ss_pred CccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccccc
Confidence 67889999988899998321 569999872110 1122443211 000 00
Q ss_pred c-ccC---CCCCCEEEEEEccCCCEEEEEECCC-------------cEEEEECCCCeEEEeee--ecCcEEEEEECCCCC
Q 000992 69 H-IDL---EPGDSITAFDYLMEKEALIVGTSSG-------------LLLLHSVDGNATEVVGR--VEGGVRFISPSPDGD 129 (1196)
Q Consensus 69 ~-~~~---~~~~~v~~v~~spd~~~La~as~dG-------------~I~lw~~~~~~~e~vg~--~~~~I~~~awSPDg~ 129 (1196)
+ .+. .+-..+..|.|.++|... +++..+ .|..++..++++..+-. ....++.++||||++
T Consensus 465 g~~~~~~~~~fnsPDnL~fd~~G~LW-f~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~k 543 (592)
T 4a9v_A 465 GSSNITPQNMFNSPDGLGFDKAGRLW-ILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQK 543 (592)
T ss_dssp CCTTCCTTTCCCCEEEEEECTTCCEE-EEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSS
T ss_pred CccCccccCccCCCCceEECCCCCEE-EEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCC
Confidence 0 000 012578999999999654 433221 46667777787764332 124689999999999
Q ss_pred EEEEE
Q 000992 130 LLGVT 134 (1196)
Q Consensus 130 ~LA~~ 134 (1196)
+|-++
T Consensus 544 tLfV~ 548 (592)
T 4a9v_A 544 TLFVG 548 (592)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88765
No 486
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=81.31 E-value=7.5 Score=35.16 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+...|+|.+|...|.+
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~ 63 (131)
T 1elr_A 40 YITNQAAVYFEKGDYNKCRELCEK 63 (131)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 445566666666777777666655
No 487
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=81.25 E-value=1.7 Score=38.53 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=10.3
Q ss_pred HHHHHHHHHHc-CChHHHHHHHHH
Q 000992 1053 AQELCEELQAL-GKPGEAAKIALD 1075 (1196)
Q Consensus 1053 ~~~la~~L~~~-~~~~eAa~i~~~ 1075 (1196)
...+|..+... |++.+|.+.+.+
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33444444444 444444444433
No 488
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=80.76 E-value=54 Score=35.24 Aligned_cols=201 Identities=8% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCCEEEEEE-CCC-----cEEEEECCCCeEEEeeeecCc-EEEEEECCCCCEEEEEeCC-----ceEEEEe---cc---C
Q 000992 86 EKEALIVGT-SSG-----LLLLHSVDGNATEVVGRVEGG-VRFISPSPDGDLLGVTTGF-----GQILVMT---HD---W 147 (1196)
Q Consensus 86 d~~~La~as-~dG-----~I~lw~~~~~~~e~vg~~~~~-I~~~awSPDg~~LA~~s~d-----~tV~l~~---~~---~ 147 (1196)
++..+++|+ .++ ++..+|+.+++...+.....+ -...+...++++++.++.+ ..+.+++ .. |
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeE
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~s 227 (1196)
..+...+..... ..++.. +|+.++ .++.+.. .....+.+||..+++-.............
T Consensus 94 ~~~~~~p~~r~~-----------------~~~~~~-~~~lyv-~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 153 (301)
T 2vpj_A 94 YSVAPMNVRRGL-----------------AGATTL-GDMIYV-SGGFDGS-RRHTSMERYDPNIDQWSMLGDMQTAREGA 153 (301)
T ss_dssp EEECCCSSCCBS-----------------CEEEEE-TTEEEE-ECCBCSS-CBCCEEEEEETTTTEEEEEEECSSCCBSC
T ss_pred EECCCCCCCccc-----------------eeEEEE-CCEEEE-EcccCCC-cccceEEEEcCCCCeEEECCCCCCCcccc
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCc--ceEEEEEec
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY--DSVKICFFS 305 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~--~~V~lW~~~ 305 (1196)
-+..-+|++++.|+.+... ...++..|+.....-. .+..........-+..-++++++.++.+... ..|.+||..
T Consensus 154 ~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~--~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 230 (301)
T 2vpj_A 154 GLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGHWT--NVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIR 230 (301)
T ss_dssp EEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEE--EECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred eEEEECCEEEEECCCCCCc-ccceEEEEeCCCCcEE--eCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCC
Q ss_pred CCEE
Q 000992 306 NNHW 309 (1196)
Q Consensus 306 n~~w 309 (1196)
+..|
T Consensus 231 ~~~W 234 (301)
T 2vpj_A 231 TDSW 234 (301)
T ss_dssp TTEE
T ss_pred CCcE
No 489
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=80.65 E-value=6 Score=47.29 Aligned_cols=51 Identities=12% Similarity=-0.045 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcC-----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCG-----D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~-----d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+..+...+.+.|+.++|.+++.+... | +...|..||+.+++++|.++-..
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 567788888999999999999987532 2 56899999999999999987643
No 490
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=80.59 E-value=8.8 Score=35.72 Aligned_cols=57 Identities=16% Similarity=0.007 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1006 FEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+-+-+..|.+.|++++|+.+|.+ ++.+- +-+ ......+|..+...|++.+|...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~------al~~~---P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEA------VCQKE---PER----EEAWRSLGLTQAENEKDGLAIIALNH 76 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH------HHHHS---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH------HHHHC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455666677777777777643 33321 111 23455677777778888888877766
No 491
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=80.46 E-value=15 Score=32.61 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=33.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1009 AATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1009 Aa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
-+.+|...|++++|+++|. +++.+... . ......+|..+...|++.+|...|.+
T Consensus 13 lg~~~~~~g~~~~A~~~~~------~al~~~p~---~----~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 13 LAQEHLKHDNASRALALFE------ELVETDPD---Y----VGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHTTCHHHHHHHHH------HHHHHSTT---C----THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH------HHHHhCCC---c----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3556666777777777763 33432211 1 13556677777777888877777555
No 492
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=80.35 E-value=8.8 Score=43.75 Aligned_cols=51 Identities=10% Similarity=0.015 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcC-CHH------HHHHHHHHhcCHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALDYCG-DVT------NGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~yl~-d~~------~Ai~~y~~~~~w~eA~rla 1100 (1196)
..++..+|..+...|+|.+|...|.+-+. +++ .-..+|.+.++|++|+...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l 330 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 330 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45777889999999999999999887543 221 2235677788888887543
No 493
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=80.34 E-value=9.3 Score=46.56 Aligned_cols=58 Identities=22% Similarity=0.159 Sum_probs=39.7
Q ss_pred CCEEEEEEccCCCEEEEEECCC-------------cEEEEECCCCeEE--EeeeecCcEEEEEECCCCCEEEEE
Q 000992 76 DSITAFDYLMEKEALIVGTSSG-------------LLLLHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVT 134 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG-------------~I~lw~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~ 134 (1196)
+.+-.|.|+|+|.. .++...+ .+...+..++++. ..+.....++.++|||||++|-+.
T Consensus 476 ~~PDNL~fd~~G~L-wI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 476 NSPDGLGFDKAGRL-WILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCE-EEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cCCcceEECCCCCE-EEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 46788999999984 4444321 2444566667665 334445679999999999988654
No 494
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=80.23 E-value=17 Score=36.36 Aligned_cols=63 Identities=16% Similarity=0.066 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCC----CHH-HHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1007 EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKL----GKD-EVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1007 ~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~----~~~-~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..-+..+...|+|++|+++| ++|+.+....+. +.. ........++..|...|+|.+|...|.+
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y------~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANC------RRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHH------HHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHH------HHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455666778888888887 445554433110 110 0123677788889999999999887655
No 495
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=80.01 E-value=2.3 Score=42.38 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....++..+...|++.+|...|.+
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHH
Confidence 455677888888888888888765
No 496
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=79.71 E-value=13 Score=33.88 Aligned_cols=82 Identities=13% Similarity=-0.052 Sum_probs=48.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----C-----
Q 000992 1009 AATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG----D----- 1079 (1196)
Q Consensus 1009 Aa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d----- 1079 (1196)
.+..|...|++++|++.|.+ ++.. .+.++ ........+|..+...|+|.+|...|.+.+. +
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~------~~~~---~p~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 77 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLS------FLEL---YPNGV-YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG 77 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHH------HHHH---CSSST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH
T ss_pred HHHHHHHhCCHHHHHHHHHH------HHHH---CCCCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH
Confidence 34556666777777776643 2321 12111 1124556678888888888888888877432 2
Q ss_pred -HHHHHHHHHHhcCHHHHHHHH
Q 000992 1080 -VTNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1080 -~~~Ai~~y~~~~~w~eA~rla 1100 (1196)
.-....+|.+.+++++|+...
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~ 99 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTL 99 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 122345667778888887643
No 497
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=78.96 E-value=4 Score=40.27 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
++..+|.-+...++|++|...|.++
T Consensus 72 ~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 72 YIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3444555555555555555555544
No 498
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=78.57 E-value=3.5 Score=36.37 Aligned_cols=81 Identities=10% Similarity=-0.047 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC------CHH
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG------DVT 1081 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~------d~~ 1081 (1196)
..+..|...|++++|+++|.+ ++.+. +.+ ......+|..+...|++.+|...|.+.+. +.+
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~------a~~~~---~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 77 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEK------AIQLD---PEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD 77 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHH------HHHHC---CCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH
T ss_pred HHHHHHHHhhhHHHHHHHHHH------HHHhC---cCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH
Confidence 345566666777777777643 33321 112 23556778888888999999888877432 221
Q ss_pred ---HHHHHHHHh-cCHHHHHHHHH
Q 000992 1082 ---NGISLLIDA-RDWEEALRVAF 1101 (1196)
Q Consensus 1082 ---~Ai~~y~~~-~~w~eA~rla~ 1101 (1196)
....+|.+. +++++|+....
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 233455666 77777766543
No 499
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=78.43 E-value=3.3 Score=40.85 Aligned_cols=12 Identities=8% Similarity=0.268 Sum_probs=5.3
Q ss_pred HHHhcCHHHHHH
Q 000992 1087 LIDARDWEEALR 1098 (1196)
Q Consensus 1087 y~~~~~w~eA~r 1098 (1196)
|.+.++|++|+.
T Consensus 125 ~~~~g~~~~A~~ 136 (177)
T 2e2e_A 125 AFMQANYAQAIE 136 (177)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcccHHHHHH
Confidence 344444444443
No 500
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=77.86 E-value=3.2 Score=38.03 Aligned_cols=24 Identities=13% Similarity=-0.022 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHh
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFC 1015 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~ 1015 (1196)
++..+|.-+...+++++|...|.+
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~ 75 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEE 75 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 344444555555555555555444
Done!