RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 000993
(1196 letters)
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 222 bits (568), Expect = 9e-66
Identities = 87/309 (28%), Positives = 131/309 (42%), Gaps = 63/309 (20%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+E L+ LG G FG V L ++K G+ A+K I+ K K +RILRE+ L +L+H ++
Sbjct: 1 YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIK-KKKIKKDRERILREIKILKKLKHPNI 59
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
VR Y FE LY+ MEYC
Sbjct: 60 VRLY-DVFED---------------------------------------EDKLYLVMEYC 79
Query: 503 P-RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
L + + ++ A RQI+ L ++H +GI+HRDL P NI D +K+
Sbjct: 80 EGGDLFDLLKKRGRLSEDEARFYLRQILSALEYLHSKGIVHRDLKPENILLDEDGHVKLA 139
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSL 621
DFGLA+ L + T VGT Y APE+ G + D++SL
Sbjct: 140 DFGLARQLDPGEKL----------------TTFVGTPEYMAPEVLLG-KGYGKAVDIWSL 182
Query: 622 GIVFFEL---WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQ-ESLLRRLMSPSPSDR 677
G++ +EL PF + + + + P S + + L+R+L+ P R
Sbjct: 183 GVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWDISPEAKDLIRKLLVKDPEKR 242
Query: 678 PSATELLQD 686
+A E LQ
Sbjct: 243 LTAEEALQH 251
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 204 bits (520), Expect = 3e-59
Identities = 91/312 (29%), Positives = 128/312 (41%), Gaps = 63/312 (20%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+E L+ LG G FG V K+K G+ AVK ++ + + + RE+ L RL H ++
Sbjct: 1 YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNI 60
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
VR FE +LY+ MEYC
Sbjct: 61 VRLI-DAFED---------------------------------------KDHLYLVMEYC 80
Query: 503 PRT-LRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
L ++ A + QI+ GL ++H GIIHRDL P NI D +KI
Sbjct: 81 EGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLHSNGIIHRDLKPENILLDENGVVKIA 140
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSL 621
DFGLAK L S T VGT +Y APE+ G K D++SL
Sbjct: 141 DFGLAKKL---------------LKSSSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVWSL 185
Query: 622 GIVFFEL---WHPFSTA-MERQIVLSDLKQKGELPPSWVAKFSEQE---SLLRRLMSPSP 674
G++ +EL PFS + Q+ L L S E L+++ ++ P
Sbjct: 186 GVILYELLTGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAKDLIKKCLNKDP 245
Query: 675 SDRPSATELLQD 686
S RP+A E+LQ
Sbjct: 246 SKRPTAEEILQH 257
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 195 bits (498), Expect = 7e-57
Identities = 82/301 (27%), Positives = 128/301 (42%), Gaps = 90/301 (29%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYYQA 448
LG GGFG V L ++K G+ A+K I+ +D S + +LRE+ L +L H ++V+ Y
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLE-ELLREIEILKKLNHPNIVKLYGV 59
Query: 449 WFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPR-TLR 507
+ + +LY+ MEYC +L+
Sbjct: 60 FEDEN----------------------------------------HLYLVMEYCEGGSLK 79
Query: 508 QVFESYDH-FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARND-IKIGDFGL 565
+ + + ++ + QI+EGL ++H GIIHRDL P NI D+ N +K+ DFGL
Sbjct: 80 DLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGL 139
Query: 566 AKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVF 625
+K L VGT Y APE+ G EK+D++SLG++
Sbjct: 140 SKLL---------------TSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVIL 184
Query: 626 FELWHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQ 685
+EL +LK L+R+++ P RPSA E+L+
Sbjct: 185 YEL--------------PELKD-----------------LIRKMLQKDPEKRPSAKEILE 213
Query: 686 D 686
Sbjct: 214 H 214
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek family is
composed of 11 different mammalian members (Nek1-11)
with similarity to the catalytic domain of Aspergillus
nidulans NIMA kinase, the founding member of the Nek
family which was identified in a screen for cell cycle
mutants that were prevented from entering mitosis. Neks
contain a conserved N-terminal catalytic domain and a
more divergent C-terminal regulatory region of various
sizes and structures. They are involved in the
regulation of downstream processes following the
activation of Cdc2, and many of their functions are cell
cycle-related. They play critical roles in microtubule
dynamics during ciliogenesis and mitosis.
Length = 258
Score = 187 bits (478), Expect = 1e-53
Identities = 85/314 (27%), Positives = 134/314 (42%), Gaps = 70/314 (22%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
+E ++ +G G FG V L + K DG+ Y +K+I L + S + L EV L +L H +
Sbjct: 1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPN 60
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
+++YY E+ E L I MEY
Sbjct: 61 IIKYY----------------------------------------ESFEEKGKLCIVMEY 80
Query: 502 CPR-TLRQVFESY----DHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
L Q + F +E F Q+ L ++H + I+HRD+ P NIF +
Sbjct: 81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNG 140
Query: 557 DIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKA 616
+K+GDFG++K L VGT +Y +PE+ Q P + K+
Sbjct: 141 LVKLGDFGISK-----VLSSTVDL----------AKTVVGTPYYLSPELCQNKP-YNYKS 184
Query: 617 DMYSLGIVFFELW---HPFSTAMERQIVLSDLKQKGE-LPPSWVAKFSEQ-ESLLRRLMS 671
D++SLG V +EL HPF ++ L LK + +P +S + +L+ L+
Sbjct: 185 DIWSLGCVLYELCTLKHPFEGENLLELALKILKGQYPPIPSQ----YSSELRNLVSSLLQ 240
Query: 672 PSPSDRPSATELLQ 685
P +RPS ++LQ
Sbjct: 241 KDPEERPSIAQILQ 254
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein
Kinase Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 168 bits (429), Expect = 6e-47
Identities = 91/307 (29%), Positives = 128/307 (41%), Gaps = 66/307 (21%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYYQA 448
LG G FG V L +K G AVK + L S + + RE+ LS LQH ++VRYY
Sbjct: 8 LGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYY-- 65
Query: 449 WFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCP-RTLR 507
G E E L I +EY +L
Sbjct: 66 ------------------------------------GSERDEEKNTLNIFLEYVSGGSLS 89
Query: 508 QVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
+ + + + + RQI+EGLA++H GI+HRD+ NI D+ +K+ DFG AK
Sbjct: 90 SLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAK 149
Query: 568 FLKLEQLDQDAAFPTDTGGVSVDGTGQV-GTYFYTAPE-IEQGWPKIDEKADMYSLGIVF 625
L + +GTG V GT ++ APE I + AD++SLG
Sbjct: 150 RLG--------------DIETGEGTGSVRGTPYWMAPEVIRGE--EYGRAADIWSLGCTV 193
Query: 626 FELW---HPFSTAMERQIVLSDLKQKGELP--PSWVAKFSEQ-ESLLRRLMSPSPSDRPS 679
E+ P+S L + GE P P SE+ + LR+ + P RP+
Sbjct: 194 IEMATGKPPWSELGNPMAALYKIGSSGEPPEIPEH---LSEEAKDFLRKCLRRDPKKRPT 250
Query: 680 ATELLQD 686
A ELLQ
Sbjct: 251 ADELLQH 257
>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii FA2-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii FA2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes FA2 and CNK4. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii FA2 was discovered
in a genetic screen for deflagellation-defective
mutants. It is essential for
basal-body/centriole-associated microtubule severing,
and plays a role in cell cycle progression. No cellular
function has yet been ascribed to CNK4.
Length = 256
Score = 147 bits (373), Expect = 1e-39
Identities = 83/311 (26%), Positives = 139/311 (44%), Gaps = 66/311 (21%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
DFE L +G G FG V K D R YA+K+I L + + + E L++L +
Sbjct: 1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSY 60
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
++RYY+++ + G L I MEY
Sbjct: 61 IIRYYESFLDKGK----------------------------------------LNIVMEY 80
Query: 502 CPR-TLRQVFESY--DHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
L ++ + ++ W F QI+ GLAH+H + I+HRD+ N+F DA +++
Sbjct: 81 AENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNV 140
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADM 618
KIGD G+AK L + VGT +Y +PE+ + P +EK+D+
Sbjct: 141 KIGDLGVAKLL---------------SDNTNFANTIVGTPYYLSPELCEDKP-YNEKSDV 184
Query: 619 YSLGIVFFELW---HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQES-LLRRLMSPSP 674
++LG+V +E HPF + ++L + +G PP +S+Q + L+ + ++
Sbjct: 185 WALGVVLYECCTGKHPFDANNQGALILKII--RGVFPPV-SQMYSQQLAQLIDQCLTKDY 241
Query: 675 SDRPSATELLQ 685
RP +LL+
Sbjct: 242 RQRPDTFQLLR 252
>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 2. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek2 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek2
subfamily includes Aspergillus nidulans NIMA kinase, the
founding member of the Nek family, which was identified
in a screen for cell cycle mutants prevented from
entering mitosis. NIMA is essential for mitotic entry
and progression through mitosis, and its degradation is
essential for mitotic exit. NIMA is involved in nuclear
membrane fission. Vertebrate Nek2 is a cell
cycle-regulated STK, localized in centrosomes and
kinetochores, that regulates centrosome splitting at the
G2/M phase. It also interacts with other mitotic kinases
such as Polo-like kinase 1 and may play a role in
spindle checkpoint. An increase in the expression of the
human NEK2 gene is strongly associated with the
progression of non-Hodgkin lymphoma.
Length = 265
Score = 146 bits (371), Expect = 3e-39
Identities = 89/324 (27%), Positives = 142/324 (43%), Gaps = 81/324 (25%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRL-----KDKSLPVNDRILREVATLSR 436
D+E L+ +G G FG V + K DG+ K+I K+K V+ EV L
Sbjct: 1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVS-----EVNILRE 55
Query: 437 LQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLY 496
L+H ++VRYY +R+ + LY
Sbjct: 56 LKHPNIVRYYD------------------------RIIDRSNQT--------------LY 77
Query: 497 IQMEYC-----PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIH-----GQGIIHRDLT 546
I MEYC + +++ + + ++E W + Q++ L H G ++HRDL
Sbjct: 78 IVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLK 137
Query: 547 PNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIE 606
P NIF DA N++K+GDFGLAK L + T VGT +Y +PE
Sbjct: 138 PANIFLDANNNVKLGDFGLAKIL------GHDSSFAKT---------YVGTPYYMSPEQL 182
Query: 607 QGWPKIDEKADMYSLGIVFFE---LWHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQ- 662
DEK+D++SLG + +E L PF+ Q+ L+ ++G+ ++S +
Sbjct: 183 NHMS-YDEKSDIWSLGCLIYELCALSPPFTAR--NQLQLASKIKEGKFRR-IPYRYSSEL 238
Query: 663 ESLLRRLMSPSPSDRPSATELLQD 686
+++ +++ P RPS ELLQ
Sbjct: 239 NEVIKSMLNVDPDKRPSTEELLQL 262
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 137 bits (348), Expect = 3e-36
Identities = 77/311 (24%), Positives = 138/311 (44%), Gaps = 68/311 (21%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
FE L+ +G GGFG V ++K G+ A+K I+L+ S ++I+ E+ L + +H +
Sbjct: 1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLE--SKEKKEKIINEIQILKKCKHPN 58
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
+V+YY ++ D +W I ME+
Sbjct: 59 IVKYYGSYL-------KKDELW---------------------------------IVMEF 78
Query: 502 CPR-TLRQVFESYDH-FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
C +L+ + +S + + ++ +++++GL ++H GIIHRD+ NI + ++K
Sbjct: 79 CSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVK 138
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMY 619
+ DFGL+ L + VGT ++ APE+ G P D KAD++
Sbjct: 139 LIDFGLSAQLSDTKARNTM----------------VGTPYWMAPEVINGKP-YDYKADIW 181
Query: 620 SLGIVFFELW-----HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSP 674
SLGI EL + M+ ++ G P + E + L++ + +P
Sbjct: 182 SLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNPEKWSD--EFKDFLKKCLQKNP 239
Query: 675 SDRPSATELLQ 685
RP+A +LL+
Sbjct: 240 EKRPTAEQLLK 250
>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2,
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii Never In Mitosis gene A
(NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii CNK2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes CNK1, and -2. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii CNK2 has both
cilliary and cell cycle functions. It influences
flagellar length through promoting flagellar
disassembly, and it regulates cell size, through
influencing the size threshold at which cells commit to
mitosis.
Length = 256
Score = 133 bits (337), Expect = 7e-35
Identities = 79/315 (25%), Positives = 137/315 (43%), Gaps = 68/315 (21%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
DF+ L+ LG G +G V K D + YA+K++ L S + + E+ L+ + H +
Sbjct: 1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN 60
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
++ Y +A+ L+ L I MEY
Sbjct: 61 IISYKEAF----------------------------------------LDGNKLCIVMEY 80
Query: 502 CP-----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
P + + + + ++ W +F Q++ GL +H Q I+HRDL NI A +
Sbjct: 81 APFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVAND 140
Query: 557 DIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKA 616
+KIGD G++K LK ++ A Q+GT Y APE+ +G P K+
Sbjct: 141 LVKIGDLGISKVLK-----KNMAKT------------QIGTPHYMAPEVWKGRP-YSYKS 182
Query: 617 DMYSLGIVFFELWHPFSTAMERQIVLSDLKQK---GELPPSWVAKFSEQESLLRRLMSPS 673
D++SLG + +E+ F+ E + + DL+ K G+ PP + ++ +R ++
Sbjct: 183 DIWSLGCLLYEM-ATFAPPFEAR-SMQDLRYKVQRGKYPPIPPIYSQDLQNFIRSMLQVK 240
Query: 674 PSDRPSATELLQDAL 688
P RP+ ++L
Sbjct: 241 PKLRPNCDKILASPA 255
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 133 bits (338), Expect = 1e-34
Identities = 83/336 (24%), Positives = 130/336 (38%), Gaps = 89/336 (26%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRL--KDKSLPVNDRILREVATLSRLQHQ 440
+E+L+ LG G +G V ++K G A+KKIRL +++ +P LRE++ L L+H
Sbjct: 1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPST--ALREISLLKELKHP 58
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++V+ DV E KL Y+ E
Sbjct: 59 NIVKLL-----------------------------------DVIHTERKL-----YLVFE 78
Query: 501 YCPRTLRQVFESYD-HFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
YC L++ + L + Q++ GLA+ H I+HRDL P NI + +K
Sbjct: 79 YCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLK 138
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMY 619
+ DFGLA+ P T T +V T +Y APEI G D++
Sbjct: 139 LADFGLARAFG---------IPLRT------YTHEVVTLWYRAPEILLGSKHYSTAVDIW 183
Query: 620 SLGIVFFELW--HP-----------------FSTAMERQIV-LSDLKQKGELPPSWVAK- 658
S+G +F E+ P T E ++ L P + K
Sbjct: 184 SVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKD 243
Query: 659 ----FSEQES----LLRRLMSPSPSDRPSATELLQD 686
+ LL +++ +P+ R SA E L+
Sbjct: 244 LEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKH 279
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 130 bits (329), Expect = 1e-33
Identities = 84/296 (28%), Positives = 120/296 (40%), Gaps = 58/296 (19%)
Query: 392 GGFGHVVLCKNKLDGRHYAVKKIRLKDKSLP-VNDRILREVATLSRLQHQHVVRYYQAWF 450
G +G V L K K G YA+K I+ D D++L E LS+ Q +VV+ Y +
Sbjct: 4 GAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYS-- 61
Query: 451 ETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPR-TLRQV 509
F G LY+ MEY P L +
Sbjct: 62 ------FQGKK--------------------------------NLYLVMEYLPGGDLASL 83
Query: 510 FESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFL 569
E+ D+++A +IV L ++H GIIHRDL P+NI D+ +K+ DFGL+K
Sbjct: 84 LENVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVG 143
Query: 570 KLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI--EQGWPKIDEKADMYSLGIVFFE 627
+ + + + VGT Y APE+ QG K D +SLG + +E
Sbjct: 144 LVRRQINLNDDEKEDKRI-------VGTPDYIAPEVILGQGHSK---TVDWWSLGCILYE 193
Query: 628 L---WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSA 680
PF +I + L K E P V E L+ +L+ P P R A
Sbjct: 194 FLVGIPPFHGETPEEIFQNILNGKIE-WPEDVEVSDEAIDLISKLLVPDPEKRLGA 248
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 132 bits (331), Expect = 5e-33
Identities = 90/415 (21%), Positives = 143/415 (34%), Gaps = 74/415 (17%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVND-RILREVATLSRLQHQ 440
+ L+ LG G FG V L +++ + A+K + K +S R LRE+ L+ L H
Sbjct: 1 SYRILRKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHP 57
Query: 441 -HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
++V+ Y Q+ LY+ M
Sbjct: 58 PNIVKLYD------------------------------------FFQDEG----SLYLVM 77
Query: 500 EYCP-RTLRQVFESYDH---FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDAR 555
EY +L + + + A + QI+ L ++H +GIIHRD+ P NI D
Sbjct: 78 EYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRD 137
Query: 556 ND-IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQG--WPKI 612
+K+ DFGLAK L T VGT Y APE+ G
Sbjct: 138 GRVVKLIDFGLAKLLPDPGSTSSIPALPST---------SVGTPGYMAPEVLLGLSLAYA 188
Query: 613 DEKADMYSLGIVFFEL---WHPFSTAMERQIVLSDLKQKGELPPSWVA----------KF 659
+D++SLGI +EL PF LK ELP +A
Sbjct: 189 SSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELIS 248
Query: 660 SEQESLLRRLMSPSPSDRPSATELLQDALPPQMEYELLDNILRMMHSSEDTSIYDKVVSS 719
LL++L++ P +R S++ L L ++ + D + S
Sbjct: 249 KAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKLKESDLSDLLKPDDSAPLRLSLPPSL 308
Query: 720 IFDEETLDMKHHAGTLRLNRDNTSSIQYSDLDTELRDYVVQVTKEMFRQHCAKHL 774
+L+ +G+ D+ S + + + L
Sbjct: 309 EALISSLNSLAISGSDLKLDDSNFSKELAPNGVSSSPHNSSSLLLSTASSKRSSL 363
>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 9. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek9 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek9, also called
Nercc1, is primarily a cytoplasmic protein but can also
localize in the nucleus. It is involved in modulating
chromosome alignment and splitting during mitosis. It
interacts with the gamma-tubulin ring complex and the
Ran GTPase, and is implicated in microtubule
organization. Nek9 associates with FACT (FAcilitates
Chromatin Transcription) and modulates interphase
progression. It also interacts with Nek6, and Nek7,
during mitosis, resulting in their activation.
Length = 256
Score = 127 bits (322), Expect = 8e-33
Identities = 86/314 (27%), Positives = 130/314 (41%), Gaps = 66/314 (21%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+ ++ LG G FG L + D K++ L S L E+ LS LQH ++
Sbjct: 2 YIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNI 61
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
+ YY + ++ L I+MEY
Sbjct: 62 IAYYNHF----------------------------------------MDDNTLLIEMEYA 81
Query: 503 PR-TLRQVFESYD--HFDKELA-WHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
TL F++E+ W+LF QIV +++IH GI+HRD+ NIF I
Sbjct: 82 NGGTLYDKIVRQKGQLFEEEMVLWYLF-QIVSAVSYIHKAGILHRDIKTLNIFLTKAGLI 140
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADM 618
K+GDFG++K L E +V VGT +Y +PE+ QG K + K+D+
Sbjct: 141 KLGDFGISKILGSEYS----------MAETV-----VGTPYYMSPELCQG-VKYNFKSDI 184
Query: 619 YSLGIVFFE---LWHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPS 675
++LG V +E L F +V+ ++ G P SE SL+ L+ P
Sbjct: 185 WALGCVLYELLTLKRTFDATNPLNLVVKIVQ--GNYTPVVSVYSSELISLVHSLLQQDPE 242
Query: 676 DRPSATELLQDALP 689
RP+A E+L L
Sbjct: 243 KRPTADEVLDQPLL 256
>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 4.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4
(MEKK4) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK4 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK4 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK4 activates the c-Jun
N-terminal kinase (JNK) and p38 MAPK signaling pathways
by directly activating their respective MAPKKs,
MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively
known as stress-activated MAPKs, as they are activated
in response to a variety of environmental stresses and
pro-inflammatory cytokines. MEKK4 also plays roles in
the re-polarization of the actin cytoskeleton in
response to osmotic stress, in the proper closure of the
neural tube, in cardiovascular development, and in
immune responses.
Length = 264
Score = 126 bits (319), Expect = 3e-32
Identities = 94/309 (30%), Positives = 128/309 (41%), Gaps = 64/309 (20%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYYQA 448
+G G FG V N G AVK+IR++D I E+ L L+H ++V+YY
Sbjct: 8 IGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYY-- 65
Query: 449 WFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPR-TLR 507
GV ++ +YI MEYC TL
Sbjct: 66 ----GV----------------------------------EVHREKVYIFMEYCSGGTLE 87
Query: 508 QVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
++ E D+ + Q++EGLA++H GI+HRD+ P NIF D IK+GDFG A
Sbjct: 88 ELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAV 147
Query: 568 FLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDE--KADMYSLGIVF 625
LK T T G V GT Y APE+ G AD++SLG V
Sbjct: 148 KLKN---------NTTTMGEEVQSL--AGTPAYMAPEVITGGKGKGHGRAADIWSLGCVV 196
Query: 626 FEL------WHPFSTAMERQIVLS-DLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRP 678
E+ W E QI+ K +P S + E + L R + P RP
Sbjct: 197 LEMATGKRPWSELDN--EFQIMFHVGAGHKPPIPDS-LQLSPEGKDFLDRCLESDPKKRP 253
Query: 679 SATELLQDA 687
+A+ELLQ
Sbjct: 254 TASELLQHP 262
>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant
dual-specificity MAP kinase kinases and similar
proteins. Protein kinases (PKs), MAP kinase kinase
(MAPKK) subfamily, Plant MAPKKs and similar proteins,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
of the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK), which itself
is phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). Members of this group include MAPKKs
from plants, kinetoplastids, alveolates, and mycetozoa.
The MAPKK, LmxPK4, from Leishmania mexicana, is
important in differentiation and virulence.
Dictyostelium discoideum MEK1 is required for proper
chemotaxis. MEK1 null mutants display severe defects in
cell polarization and directional movement. Plants
contain multiple MAPKKs like other eukaryotes. The
Arabidopsis genome encodes for 10 MAPKKs while poplar
and rice contain 13 MAPKKs each. The functions of these
proteins have not been fully elucidated. There is
evidence to suggest that MAPK cascades are involved in
plant stress responses. In Arabidopsis, MKK3 plays a
role in pathogen signaling, MKK2 is involved in cold and
salt stress signaling, MKK4/MKK5 participates in innate
immunity, and MKK7 regulates basal and systemic acquired
resistance.
Length = 264
Score = 124 bits (314), Expect = 1e-31
Identities = 89/317 (28%), Positives = 139/317 (43%), Gaps = 74/317 (23%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
+D E ++ LG G G V ++K G+ YA+KKI + ++LRE+ TL +
Sbjct: 1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEE-FRKQLLRELKTLRSCESP 59
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
+VV+ Y A+++ G + I +E
Sbjct: 60 YVVKCYGAFYKEG----------------------------------------EISIVLE 79
Query: 501 YCPR-TLRQVFESYDHF-DKELAWHLFRQIVEGLAHIHGQ-GIIHRDLTPNNIFFDARND 557
Y +L + + + LA ++ RQI++GL ++H + IIHRD+ P+N+ +++ +
Sbjct: 80 YMDGGSLADLLKKVGKIPEPVLA-YIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGE 138
Query: 558 IKIGDFGLAKFLKLEQ-LDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDE-K 615
+KI DFG++K LE LDQ F VGT Y +PE QG +
Sbjct: 139 VKIADFGISKV--LENTLDQCNTF--------------VGTVTYMSPERIQG--ESYSYA 180
Query: 616 ADMYSLGIVFFELW---HPFSTAMERQIVLSDLKQK--GELPPSWVAK-FSEQ-ESLLRR 668
AD++SLG+ E PF Q +L Q PPS A+ FS + +
Sbjct: 181 ADIWSLGLTLLECALGKFPFLPP--GQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISA 238
Query: 669 LMSPSPSDRPSATELLQ 685
+ P RPSA ELLQ
Sbjct: 239 CLQKDPKKRPSAAELLQ 255
>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Phosphoinositide-dependent
kinase 1. Serine/Threonine Kinases (STKs),
Phosphoinositide-dependent kinase 1 (PDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PDK1
carries an N-terminal catalytic domain and a C-terminal
pleckstrin homology (PH) domain that binds
phosphoinositides. It phosphorylates the activation loop
of AGC kinases that are regulated by PI3K such as PKB,
SGK, and PKC, among others, and is crucial for their
activation. Thus, it contributes in regulating many
processes including metabolism, growth, proliferation,
and survival. PDK1 also has the ability to
autophosphorylate and is constitutively active in
mammalian cells. PDK1 is essential for normal embryo
development and is important in regulating cell volume.
Length = 280
Score = 124 bits (313), Expect = 3e-31
Identities = 86/328 (26%), Positives = 131/328 (39%), Gaps = 77/328 (23%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVK---KIRL----KDKSLPVNDRILREVAT 433
+DF+ + +G G F VVL K K + YA+K K +L K K + E
Sbjct: 1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKY------VKIEKEV 54
Query: 434 LSRL-QHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLES 492
L+RL H +++ Y TF + +EN
Sbjct: 55 LTRLNGHPGIIKLY------------------------YTFQD----------EEN---- 76
Query: 493 TYLYIQMEYCP-RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIF 551
LY +EY P L Q Y D++ +I+ L ++H +GIIHRDL P NI
Sbjct: 77 --LYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENIL 134
Query: 552 FDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ------VGTYFYTAPEI 605
D IKI DFG AK L + + T S + VGT Y +PE+
Sbjct: 135 LDKDMHIKITDFGTAKVLDPNSSPE-SNKGDATNIDSQIEKNRRRFASFVGTAEYVSPEL 193
Query: 606 --EQGWPKIDEKADMYSLGIVFFELW---HPFSTAMERQIVLSDLKQKGELPPSW--VAK 658
E+ + +D+++LG + +++ PF + E LK + PP++ AK
Sbjct: 194 LNEK---PAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSFPPNFPPDAK 250
Query: 659 FSEQESLLRRLMSPSPSDRPSATELLQD 686
L+ +L+ P DR E +
Sbjct: 251 -----DLIEKLLVLDPQDRLGVNEGYDE 273
>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine
Kinase, Cell Cycle-Related Kinase. Serine/Threonine
Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CCRK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CCRK was previously called p42. It is a
Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK)
which is essential for the activation of CDK2. It is
indispensable for cell growth and has been implicated in
the progression of glioblastoma multiforme. In the
heart, a splice variant of CCRK with a different
C-terminal half is expressed, this variant promotes
cardiac cell growth and survival and is significantly
down-regulated during the development of heart failure.
Length = 286
Score = 123 bits (312), Expect = 4e-31
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 55/248 (22%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
++ L +G G G V K++ G A+KK+ L+ + ++ LRE+ L QH +
Sbjct: 1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPY 60
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
VV+ DV + + MEY
Sbjct: 61 VVKLL-----------------------------------DVF-----PHGSGFVLVMEY 80
Query: 502 CPRTLRQVFESYDH-FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKI 560
P L +V + + R +++G+A++H GI+HRDL P N+ A +KI
Sbjct: 81 MPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKI 140
Query: 561 GDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYS 620
DFGLA+ + QV T +Y APE+ G K D D+++
Sbjct: 141 ADFGLARLFS--------------EEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWA 186
Query: 621 LGIVFFEL 628
+G +F EL
Sbjct: 187 VGCIFAEL 194
>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 1. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek1 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek1 is
associated with centrosomes throughout the cell cycle.
It is involved in the formation of primary cilium and in
the maintenance of centrosomes. It cycles through the
nucleus and may be capable of relaying signals between
the cilium and the nucleus. Nek1 is implicated in the
development of polycystic kidney disease, which is
characterized by benign polycystic tumors formed by
abnormal overgrowth of renal epithelial cells. It
appears also to be involved in DNA damage response, and
may be important for both correct DNA damage checkpoint
activation and DNA repair.
Length = 256
Score = 122 bits (307), Expect = 7e-31
Identities = 87/319 (27%), Positives = 139/319 (43%), Gaps = 84/319 (26%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+ +++ +G G FG +L K+K DG+ Y +K+I + S + +EVA LS ++H ++
Sbjct: 2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNI 61
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
V+Y QE+ E+ LYI M+YC
Sbjct: 62 VQY----------------------------------------QESFEENGNLYIVMDYC 81
Query: 503 PRTLRQVFESYDHF-------------DKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNN 549
E D + D+ L W F QI L H+H + I+HRD+ N
Sbjct: 82 --------EGGDLYKKINAQRGVLFPEDQILDW--FVQICLALKHVHDRKILHRDIKSQN 131
Query: 550 IFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGW 609
IF IK+GDFG+A+ L V + T +GT +Y +PEI +
Sbjct: 132 IFLTKDGTIKLGDFGIARVL--------------NSTVELARTC-IGTPYYLSPEICENR 176
Query: 610 PKIDEKADMYSLGIVFFE---LWHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLL 666
P + K+D+++LG V +E L H F + +VL + +G PP + +L+
Sbjct: 177 P-YNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKII--RGSYPPVSSHYSYDLRNLV 233
Query: 667 RRLMSPSPSDRPSATELLQ 685
+L +P DRPS +L+
Sbjct: 234 SQLFKRNPRDRPSVNSILE 252
>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), CMGC family, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CMGC family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The CMGC family consists of Cyclin-Dependent
protein Kinases (CDKs), Mitogen-activated protein
kinases (MAPKs) such as Extracellular signal-regulated
kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38,
and similar proteins. CDKs belong to a large subfamily
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. MAPKs
serve as important mediators of cellular responses to
extracellular signals. They control critical cellular
functions including differentiation, proliferation,
migration, and apoptosis. They are also implicated in
the pathogenesis of many diseases including multiple
types of cancer, stroke, diabetes, and chronic
inflammation.
Length = 283
Score = 122 bits (309), Expect = 8e-31
Identities = 60/247 (24%), Positives = 98/247 (39%), Gaps = 56/247 (22%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+++L +G G +G V ++KL G A+KKI+L+ +S + LRE+ L L H ++
Sbjct: 1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNI 60
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
+ DV + L Y+ E+
Sbjct: 61 I-----------------------------------KLLDVFRHKGDL-----YLVFEFM 80
Query: 503 PRTLRQVFESYD-HFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
L ++ + + L Q+++GLA H GI+HRDL P N+ + +K+
Sbjct: 81 DTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLA 140
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSL 621
DFGLA+ T V T +Y APE+ G D++S+
Sbjct: 141 DFGLAR-----SFGSPVRPYTH----------YVVTRWYRAPELLLGDKGYSTPVDIWSV 185
Query: 622 GIVFFEL 628
G +F EL
Sbjct: 186 GCIFAEL 192
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 121 bits (307), Expect = 8e-31
Identities = 81/307 (26%), Positives = 125/307 (40%), Gaps = 74/307 (24%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYYQA 448
+G G FG V N G A+K+I L+ I++E+ L L+H ++V+Y +
Sbjct: 8 IGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGS 67
Query: 449 WFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCP-RTLR 507
ET S LYI +EY +LR
Sbjct: 68 -IET---------------------------------------SDSLYIILEYAENGSLR 87
Query: 508 QVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
Q+ + + F + L Q+++GLA++H QG+IHRD+ NI +K+ DFG+A
Sbjct: 88 QIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVA- 146
Query: 568 FLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFE 627
T VS D VGT ++ APE+ + +D++SLG E
Sbjct: 147 --------------TKLNDVSKDDASVVGTPYWMAPEVIEMSG-ASTASDIWSLGCTVIE 191
Query: 628 LWH---PFST-----AMERQIVLSDLKQKGELPPSWVAKFSEQ-ESLLRRLMSPSPSDRP 678
L P+ A+ R IV D LP S + + L + P+ RP
Sbjct: 192 LLTGNPPYYDLNPMAALFR-IVQDD---HPPLPEG----ISPELKDFLMQCFQKDPNLRP 243
Query: 679 SATELLQ 685
+A +LL+
Sbjct: 244 TAKQLLK 250
>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase (MAPK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MAPK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAPKs serve as important
mediators of cellular responses to extracellular
signals. They control critical cellular functions
including differentiation, proliferation, migration, and
apoptosis. They are also implicated in the pathogenesis
of many diseases including multiple types of cancer,
stroke, diabetes, and chronic inflammation. Typical MAPK
pathways involve a triple kinase core cascade comprising
of the MAPK, which is phosphorylated and activated by a
MAPK kinase (MAP2K or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAP3K or MKKK). Each cascade is activated either by a
small GTP-binding protein or by an adaptor protein,
which transmits the signal either directly to a MAP3K to
start the triple kinase core cascade or indirectly
through a mediator kinase, a MAP4K. There are three main
typical MAPK subfamilies: Extracellular signal-Regulated
Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38.
Some MAPKs are atypical in that they are not regulated
by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7.
Length = 330
Score = 124 bits (313), Expect = 9e-31
Identities = 81/337 (24%), Positives = 127/337 (37%), Gaps = 84/337 (24%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+E L+P+G G +G V +K GR A+KKI L RILRE+ L L+H+++
Sbjct: 2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENI 61
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
+ G+ D + F+ DV YI E
Sbjct: 62 I---------GLLDILRPP-------SPEDFN-------DV------------YIVTELM 86
Query: 503 PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
L +V +S + + QI+ GL ++H +IHRDL P+NI ++ D+KI D
Sbjct: 87 ETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICD 146
Query: 563 FGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLG 622
FGLA+ +D D T V T +Y APE+ + + D++S+G
Sbjct: 147 FGLAR-----GVDPDEDEKGFL-------TEYVVTRWYRAPELLLSSSRYTKAIDIWSVG 194
Query: 623 IVFFEL----------WH--------------------PFSTAMERQIVLSDLKQKGELP 652
+F EL + ++ R + S K+
Sbjct: 195 CIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKP---K 251
Query: 653 PSWVAKFSEQES----LLRRLMSPSPSDRPSATELLQ 685
F LL +++ P R +A E L
Sbjct: 252 KPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALA 288
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin
cytoskeleton organization. PAK deregulation is
associated with tumor development. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). Group II PAKs contain a PBD and a
catalytic domain, but lack other motifs found in group I
PAKs. Since group II PAKs do not contain an obvious AID,
they may be regulated differently from group I PAKs.
Group I PAKs interact with the SH3 containing proteins
Nck, Grb2 and PIX; no such binding has been demonstrated
for group II PAKs.
Length = 286
Score = 120 bits (304), Expect = 5e-30
Identities = 74/312 (23%), Positives = 130/312 (41%), Gaps = 70/312 (22%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
++ L+ +G G G V ++ G+ A+KK+RL+ ++ + I+ E+ + +H ++
Sbjct: 21 YKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNK---ELIINEILIMKDCKHPNI 77
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
V YY ++ L L++ MEY
Sbjct: 78 VDYYDSY----------------------------------------LVGDELWVVMEYM 97
Query: 503 PR-TLRQVFESYDHFDKE--LAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
+L + E +A+ + R++++GL ++H Q +IHRD+ +NI +K
Sbjct: 98 DGGSLTDIITQNFVRMNEPQIAY-VCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVK 156
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMY 619
+ DFG A L E+ + VGT ++ APE+ + K D++
Sbjct: 157 LADFGFAAQLTKEKSKR---------------NSVVGTPYWMAPEVIKRKD-YGPKVDIW 200
Query: 620 SLGIVFFELW--HP--FSTAMERQIVLSDLKQKGELPPSWVAKFSEQ-ESLLRRLMSPSP 674
SLGI+ E+ P R + L + KG P K+S + + L + + P
Sbjct: 201 SLGIMCIEMAEGEPPYLREPPLRALFL--ITTKGIPPLKNPEKWSPEFKDFLNKCLVKDP 258
Query: 675 SDRPSATELLQD 686
RPSA ELLQ
Sbjct: 259 EKRPSAEELLQH 270
>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 5. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek5 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. The specific function of Nek5
is unknown.
Length = 257
Score = 118 bits (296), Expect = 2e-29
Identities = 92/316 (29%), Positives = 137/316 (43%), Gaps = 77/316 (24%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+E ++ +G G FG + L K K D H +K+I L + + +EV L++++H ++
Sbjct: 2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNI 61
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
V ++ ++ E G L+I MEYC
Sbjct: 62 VTFFASFQENG----------------------------------------RLFIVMEYC 81
Query: 503 ------PRTLRQ---VFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD 553
R RQ +F D+ L+W F QI GL HIH + I+HRD+ NIF
Sbjct: 82 DGGDLMKRINRQRGVLFSE----DQILSW--FVQISLGLKHIHDRKILHRDIKSQNIFLS 135
Query: 554 ARNDI-KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKI 612
+ K+GDFG+A+ QL+ VGT +Y +PEI Q P
Sbjct: 136 KNGMVAKLGDFGIAR-----QLNDSMELAYTC----------VGTPYYLSPEICQNRP-Y 179
Query: 613 DEKADMYSLGIVFFELW---HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRL 669
+ K D++SLG V +EL HPF Q+VL +G P + SL+ +L
Sbjct: 180 NNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKIC--QGYFAPISPNFSRDLRSLISQL 237
Query: 670 MSPSPSDRPSATELLQ 685
SP DRPS T +L+
Sbjct: 238 FKVSPRDRPSITSILK 253
>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), AGC (Protein Kinases A, G and C) family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The AGC family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and Phosphoinositide 3-Kinase (PI3K). Members of
this family include cAMP-dependent Protein Kinase (PKA),
cGMP-dependent Protein Kinase (PKG), Protein Kinase C
(PKC), Protein Kinase B (PKB), G protein-coupled
Receptor Kinase (GRK), Serum- and Glucocorticoid-induced
Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase
(p70S6K or S6K), among others. AGC kinases share an
activation mechanism based on the phosphorylation of up
to three sites: the activation loop (A-loop), the
hydrophobic motif (HM) and the turn motif.
Phosphorylation at the A-loop is required of most AGC
kinases, which results in a disorder-to-order transition
of the A-loop. The ordered conformation results in the
access of substrates and ATP to the active site. A
subset of AGC kinases with C-terminal extensions
containing the HM also requires phosphorylation at this
site. Phosphorylation at the HM allows the C-terminal
extension to form an ordered structure that packs into
the hydrophobic pocket of the catalytic domain, which
then reconfigures the kinase into an active bi-lobed
state. In addition, growth factor-activated AGC kinases
such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require
phosphorylation at the turn motif (also called tail or
zipper site), located N-terminal to the HM at the
C-terminal extension. AGC kinases regulate many cellular
processes including division, growth, survival,
metabolism, motility, and differentiation. Many are
implicated in the development of various human diseases.
Length = 250
Score = 116 bits (294), Expect = 5e-29
Identities = 82/300 (27%), Positives = 117/300 (39%), Gaps = 66/300 (22%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVN--DRILREVATLSRLQHQHVVRYY 446
LG G FG V+L + K G+ YA+K ++ K K + + L E LSR+ H +V+ +
Sbjct: 1 LGKGSFGKVLLVRKKDTGKLYAMKVLK-KKKIIKRKEVEHTLTERNILSRINHPFIVKLH 59
Query: 447 QAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPR-T 505
A F+T LY+ +EY P
Sbjct: 60 YA-FQT---------------------------------------EEKLYLVLEYAPGGE 79
Query: 506 LRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGL 565
L F +E A +IV L ++H GII+RDL P NI DA IK+ DFGL
Sbjct: 80 LFSHLSKEGRFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGL 139
Query: 566 AKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVF 625
AK L T+T GT Y APE+ G + D +SLG++
Sbjct: 140 AKELS------SEGSRTNT---------FCGTPEYLAPEVLLGKG-YGKAVDWWSLGVLL 183
Query: 626 FEL---WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATE 682
+E+ PF ++I LK P E L+ L+ P+ R +
Sbjct: 184 YEMLTGKPPFYAEDRKEIYEKILKDPLRFPEFL---SPEARDLISGLLQKDPTKRLGSGG 240
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase.
Length = 763
Score = 124 bits (313), Expect = 7e-29
Identities = 120/453 (26%), Positives = 203/453 (44%), Gaps = 64/453 (14%)
Query: 754 LRDYVVQVTKEMFRQHCAKHLEIEPMY-----LLGDCPQFKRNTVKLLTHGGDLLELSHE 808
+R+ + +F++H A L+ P++ L+G + + L GG+L L ++
Sbjct: 343 IREKAFSIITSVFKRHGATALDT-PVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYD 401
Query: 809 LRLPFIRWAISNQKSSFKRYEISSVYRRAIGHSPPNR-----YLQGDFDIIGGASAL-TE 862
L +PF R+ N +SFKRY+I+ VYRR P++ + Q DFDI G + +
Sbjct: 402 LTVPFARYVAMNGITSFKRYQIAKVYRR----DNPSKGRYREFYQCDFDIAGVYEPMGPD 457
Query: 863 AEVLKVTMDIVTRFFHAESCDIHLNHGDLLEAIWSWAGIKAEHREKVAELLAMMGSLRPQ 922
E++KV +++ ++ LNH LL+ + G+ EK + + + L Q
Sbjct: 458 FEIIKVLTELLDELDIGTY-EVKLNHRKLLDGMLEICGVPP---EKFRTICSSIDKLDKQ 513
Query: 923 SSEWKSKWVVIRRQLLQELNLAEAVVNRLQT-VGLRFCGAADQALPRLR---GALPADKP 978
S + +++++++E L+ +++ V R G + L +LR +
Sbjct: 514 S------FEQVKKEMVEEKGLSNETADKIGNFVKER--GPPLELLSKLRQEGSEFLGNAS 565
Query: 979 TRKALDELYLRIWRIEKNIYIDALMPPIESYHRNLFFQVFSVKEKYPATLVEGTL----- 1033
+R ALDEL + +EK+ I ++ + S R L + Y + E
Sbjct: 566 SRAALDELEIMFKALEKSKAIGKIVFDL-SLARGL--------DYYTGVIYEAVFKGAQV 616
Query: 1034 --LAVGGRYDYLLHRMWDREYVGYASRTNPPSGVGASLALE---TIIQHYPVDFKPVRNE 1088
+A GGRYD L VG S P+ VG SL +E I++ + V
Sbjct: 617 GSIAAGGRYDNL---------VGMFSGKQVPA-VGVSLGIERVFAIMEQQEEEKSQVIRP 666
Query: 1089 AGTSVLVCSRGGGGLLVERMELVAELWEENIKAQFVPVPDPSLTEQYEYASEHDIKCLVI 1148
T VLV S G L ELV+ELW IKA++ + + A E I +V+
Sbjct: 667 TETEVLV-SIIGDDKLALAAELVSELWNAGIKAEY--KVSTRKAKHLKRAKESGIPWMVL 723
Query: 1149 LTDTGAQKGLVKVRHLDVKKEKEVQRESLVRFL 1181
+ + KG VK+++L+ E+EV R V+ L
Sbjct: 724 VGEKELSKGFVKLKNLEAGVEEEVDRTCFVQEL 756
>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent
protein Kinase 9-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK9-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK9 and CDK12 from higher eukaryotes, yeast
BUR1, C-type plant CDKs (CdkC), and similar proteins.
CDK9, BUR1, and CdkC are functionally equivalent. They
act as a kinase for the C-terminal domain of RNA
polymerase II and participate in regulating mutliple
steps of gene expression including transcription
elongation and RNA processing. CDK9 and CdkC associate
with T-type cyclins while BUR1 associates with the
cyclin BUR2. CDK12 is a unique CDK that contains an
arginine/serine-rich (RS) domain, which is predominantly
found in splicing factors. CDK12 interacts with cyclins
L1 and L2, and participates in regulating transcription
and alternative splicing.
Length = 287
Score = 115 bits (291), Expect = 2e-28
Identities = 79/338 (23%), Positives = 132/338 (39%), Gaps = 90/338 (26%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKS--LPVNDRILREVATLSRLQHQ 440
+E++ +G G +G V +NK G A+KKIR++++ P+ +RE+ L +L+H
Sbjct: 1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPIT--AIREIKLLQKLRHP 58
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++VR E + G +Y+ E
Sbjct: 59 NIVRLK----EIVTSKGKGS----------------------------------IYMVFE 80
Query: 501 YCPRTLRQVFESYD-HFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
Y L + +S + F + +Q++EGL ++H GI+HRD+ +NI + +K
Sbjct: 81 YMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLK 140
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMY 619
+ DFGLA+ S D T +V T +Y PE+ G + + DM+
Sbjct: 141 LADFGLARPYTKRN--------------SADYTNRVITLWYRPPELLLGATRYGPEVDMW 186
Query: 620 SLGIVFFELWH-----PFSTAMERQIVL----------------------SDLKQKGELP 652
S+G + EL+ ST +E Q+ +LK K
Sbjct: 187 SVGCILAELFLGKPIFQGSTELE-QLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYK 245
Query: 653 PSWVAKFSEQES-----LLRRLMSPSPSDRPSATELLQ 685
F LL +L++ P R SA + LQ
Sbjct: 246 RRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ 283
>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein
Kinase Like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase like
(CDKL) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDKL subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDKL1-5 and similar proteins. Some CDKLs,
like CDKL1 and CDKL3, may be implicated in
transformation and others, like CDKL3 and CDKL5, are
associated with mental retardation when impaired. CDKL2
plays a role in learning and memory.
Length = 288
Score = 115 bits (289), Expect = 4e-28
Identities = 84/348 (24%), Positives = 128/348 (36%), Gaps = 107/348 (30%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
N +E L +G G +G V+ C+NK G A+KK + + V LREV L +L+H+
Sbjct: 1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHE 60
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++V +A+ R LY+ E
Sbjct: 61 NIVNLKEAF------------RR----------KGR------------------LYLVFE 80
Query: 501 YCPRTLRQVFESYD-----HFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDAR 555
Y RTL ++ E+ + W Q+++ +A+ H IIHRD+ P NI
Sbjct: 81 YVERTLLELLEASPGGLPPDAVRSYIW----QLLQAIAYCHSHNIIHRDIKPENILVSES 136
Query: 556 NDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEK 615
+K+ DFG A+ L + T V T +Y APE+ G +
Sbjct: 137 GVLKLCDFGFARAL--------------RARPASPLTDYVATRWYRAPELLVGDTNYGKP 182
Query: 616 ADMYSLGIVFFELWHPFSTAMERQIV--LSDLKQ-------KGELPPSWVAKFS------ 660
D++++G + EL + SD+ Q G LPPS FS
Sbjct: 183 VDVWAIGCIMAEL------LDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFA 236
Query: 661 --------EQESLLRR---------------LMSPSPSDRPSATELLQ 685
+ ESL RR + P +R + ELLQ
Sbjct: 237 GVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ 284
>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinases, Never In Mitosis gene
A-related kinase 6 and 7. Serine/Threonine Kinases
(STKs), Never In Mitosis gene A (NIMA)-related kinase 6
(Nek6) and Nek7 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The Nek6/7 subfamily is part of a family of 11 different
Neks (Nek1-11) that are involved in cell cycle control.
The Nek family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek6 and Nek7 are the shortest Neks,
consisting only of the catalytic domain and a very short
N-terminal extension. They show distinct expression
patterns and both appear to be downstream substrates of
Nek9. They are required for mitotic spindle formation
and cytokinesis. They may also be regulators of the p70
ribosomal S6 kinase.
Length = 267
Score = 112 bits (283), Expect = 2e-27
Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 70/320 (21%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLP-VNDRILREVATLSRLQ 438
L +F+ + +G G F V LDGR A+KK+++ + L+E+ L +L
Sbjct: 1 LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLD 60
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H +V++Y ++ E N+L I
Sbjct: 61 HPNVIKYLASFIE-----------------------------------NNELN-----IV 80
Query: 499 MEYCP-----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD 553
+E R ++ + + W F Q+ L H+H + I+HRD+ P N+F
Sbjct: 81 LELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFIT 140
Query: 554 ARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI--EQGWPK 611
A +K+GD GL +F + AA VGT +Y +PE E G+
Sbjct: 141 ATGVVKLGDLGLGRFFSSKTT---AAH------------SLVGTPYYMSPERIHENGY-- 183
Query: 612 IDEKADMYSLGIVFFELWHPFSTAMERQIVLSDLKQK---GELPPSWVAKFSEQ-ESLLR 667
+ K+D++SLG + +E+ S ++ L L +K + PP +SE+ L+
Sbjct: 184 -NFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPLPADHYSEELRDLVS 242
Query: 668 RLMSPSPSDRPSATELLQDA 687
R ++P P RP + +LQ A
Sbjct: 243 RCINPDPEKRPDISYVLQVA 262
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of plant mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks)
including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1
is a MAPKKK that phosphorylates and activates MAPK
kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Arabidopsis thaliana
MEKK1 activates MPK4, a MAPK that regulates systemic
acquired resistance. MEKK1 also participates in the
regulation of temperature-sensitive and tissue-specific
cell death.
Length = 258
Score = 111 bits (280), Expect = 3e-27
Identities = 80/311 (25%), Positives = 129/311 (41%), Gaps = 74/311 (23%)
Query: 387 QPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKD---KSLPVNDRILREVATLSRLQHQHVV 443
+ LG G FG V N DG +AVK++ L D ++ +E+A LS+LQH ++V
Sbjct: 6 ELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIV 65
Query: 444 RYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCP 503
+Y GT + E LYI +E P
Sbjct: 66 QYL-------------------GT---------------------EREEDNLYIFLELVP 85
Query: 504 R-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
+L ++ + Y F + + RQI+ GL ++H + +HRD+ NI D +K+ D
Sbjct: 86 GGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLAD 145
Query: 563 FGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI-----EQGWPKIDEKAD 617
FG+AK ++ + +F G+ ++ APE+ G AD
Sbjct: 146 FGMAK--QVVEFSFAKSF--------------KGSPYWMAPEVIAQQGGYGLA-----AD 184
Query: 618 MYSLGIVFFELWH---PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSP 674
++SLG E+ P+S V + + ELPP E + + + + P
Sbjct: 185 IWSLGCTVLEMATGKPPWSQLEGVAAVFK-IGRSKELPPIPDHLSDEAKDFILKCLQRDP 243
Query: 675 SDRPSATELLQ 685
S RP+A ELL+
Sbjct: 244 SLRPTAAELLE 254
>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 3. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek3 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek3 is primarily
localized in the cytoplasm and shows no cell
cycle-dependent changes in its activity. It is present
in the axons of neurons and affects morphogenesis and
polarity through its regulation of microtubule
acetylation. Nek3 modulates the signaling of the
prolactin receptor through its activation of Vav2 and
contributes to prolactin-mediated motility of breast
cancer cells.
Length = 255
Score = 111 bits (278), Expect = 5e-27
Identities = 83/311 (26%), Positives = 135/311 (43%), Gaps = 69/311 (22%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
+ L+ +G G FG +L ++ + YA+K+IRL S V D +E L++++H +
Sbjct: 1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDS-RKEAVLLAKMKHPN 59
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
+V + ++ F+ D +LYI MEY
Sbjct: 60 IVAFKES--------FEADG--------------------------------HLYIVMEY 79
Query: 502 CP-----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
C + ++ D L W F Q+ G+ HIH + ++HRD+ NIF
Sbjct: 80 CDGGDLMQKIKLQRGKLFPEDTILQW--FVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNG 137
Query: 557 DIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKA 616
+K+GDFG A+ L T + T VGT +Y PEI + P + K+
Sbjct: 138 KVKLGDFGSARLL--------------TSPGAYACT-YVGTPYYVPPEIWENMP-YNNKS 181
Query: 617 DMYSLGIVFFELW---HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPS 673
D++SLG + +EL HPF + ++L +G P E SL++++ +
Sbjct: 182 DIWSLGCILYELCTLKHPFQANSWKNLILKVC--QGSYKPLPSHYSYELRSLIKQMFKRN 239
Query: 674 PSDRPSATELL 684
P RPSAT +L
Sbjct: 240 PRSRPSATTIL 250
>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like
protein kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 3 (MST3)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST3, MST4,
STK25, Schizosaccharomyces pombe Nak1 and Sid1,
Saccharomyces cerevisiae sporulation-specific protein 1
(SPS1), and related proteins. Nak1 is required by
fission yeast for polarizing the tips of actin
cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Sid1 is a component in the septation initiation network
(SIN) signaling pathway, and plays a role in
cytokinesis. SPS1 plays a role in regulating proteins
required for spore wall formation. MST4 plays a role in
mitogen-activated protein kinase (MAPK) signaling during
cytoskeletal rearrangement, morphogenesis, and
apoptosis. MST3 phosphorylates the STK NDR and may play
a role in cell cycle progression and cell morphology.
STK25 may play a role in the regulation of cell
migration and polarization.
Length = 274
Score = 109 bits (275), Expect = 2e-26
Identities = 86/322 (26%), Positives = 132/322 (40%), Gaps = 89/322 (27%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
F L+ +G G FG V +K + A+K I L++ + D I +E+ LS+ +
Sbjct: 1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIED-IQQEIQFLSQCRSP 59
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++ +YY GS F L+ + L+I ME
Sbjct: 60 YITKYY-----------------GS-------F----------------LKGSKLWIIME 79
Query: 501 YCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
YC + + + D+ + R+++ GL ++H +G IHRD+ NI D+K
Sbjct: 80 YCGGGSCLDLLKPGK-LDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVK 138
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE-IEQGWPKIDEKADM 618
+ DFG++ L ++ F VGT F+ APE I+Q DEKAD+
Sbjct: 139 LADFGVSGQLTSTMSKRN-TF--------------VGTPFWMAPEVIKQS--GYDEKADI 181
Query: 619 YSLGIVFFEL---------WHPFSTAMERQIVLSDLKQKGELPPSWVA-KFSEQ-----E 663
+SLGI EL HP M ++ PPS KFS+
Sbjct: 182 WSLGITAIELAKGEPPLSDLHP----MRVLFLIPKNN-----PPSLEGNKFSKPFKDFVS 232
Query: 664 SLLRRLMSPSPSDRPSATELLQ 685
L + P +RPSA ELL+
Sbjct: 233 LCLNK----DPKERPSAKELLK 250
>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal
Byr2-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Byr2-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae
and Cryptococcus neoformans Ste11, and related proteins.
They contain an N-terminal SAM (sterile alpha-motif)
domain, which mediates protein-protein interaction, and
a C-terminal catalytic domain. MAPKKKs phosphorylate and
activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which
in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Fission
yeast Byr2 is regulated by Ras1. It responds to
pheromone signaling and controls mating through the MAPK
pathway. Budding yeast Ste11 functions in MAPK cascades
that regulate mating, high osmolarity glycerol, and
filamentous growth responses.
Length = 267
Score = 109 bits (274), Expect = 2e-26
Identities = 91/307 (29%), Positives = 136/307 (44%), Gaps = 63/307 (20%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDR-------ILREVATLSRLQHQH 441
+G G FG V L N G AVK++ L S DR + RE+A L LQH++
Sbjct: 8 IGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN 67
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
+V+Y L SS L++ +L I +EY
Sbjct: 68 IVQY----------------------LGSS------------------LDADHLNIFLEY 87
Query: 502 CPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKI 560
P ++ + +Y F++ L + RQI++GL ++H +GIIHRD+ NI D + IKI
Sbjct: 88 VPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKI 147
Query: 561 GDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYS 620
DFG++K L+ L T T G G V F+ APE+ + KAD++S
Sbjct: 148 SDFGISKKLEANSLS------TKTNGARPSLQGSV---FWMAPEVVKQ-TSYTRKADIWS 197
Query: 621 LGIVFFELW---HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
LG + E+ HPF + Q + + PS ++ SE L + + R
Sbjct: 198 LGCLVVEMLTGKHPFPDCTQLQAIFKIGENASPEIPSNIS--SEAIDFLEKTFEIDHNKR 255
Query: 678 PSATELL 684
P+A ELL
Sbjct: 256 PTAAELL 262
>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 8. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek8 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek8 contains an
N-terminal kinase catalytic domain and a C-terminal RCC1
(regulator of chromosome condensation) domain. A double
point mutation in Nek8 causes cystic kidney disease in
mice that genetically resembles human autosomal
recessive polycystic kidney disease (ARPKD). Nek8 is
also associated with a rare form of juvenile renal
cystic disease, nephronophthisis type 9. It has been
suggested that a defect in the ciliary localization of
Nek8 contributes to the development of cysts manifested
by these diseases.
Length = 256
Score = 108 bits (272), Expect = 3e-26
Identities = 80/315 (25%), Positives = 131/315 (41%), Gaps = 70/315 (22%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+E+++ +G G FG V LC+ K D + +K+I ++ + E L L H ++
Sbjct: 2 YEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNI 61
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
+ YY EN LE L I MEY
Sbjct: 62 IEYY----------------------------------------ENFLEDKALMIVMEYA 81
Query: 503 P-----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
P +++ S D++ H F QI+ L H+H + I+HRDL NI D
Sbjct: 82 PGGTLAEYIQKRCNSL--LDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKM 139
Query: 558 I-KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKA 616
+ KIGDFG++K L + A+ VGT Y +PE+ +G P ++K+
Sbjct: 140 VVKIGDFGISKILS----SKSKAYTV------------VGTPCYISPELCEGKP-YNQKS 182
Query: 617 DMYSLGIVFFELW---HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPS 673
D+++LG V +EL F A +VL + G P + L+ +++
Sbjct: 183 DIWALGCVLYELASLKRAFEAANLPALVLKIM--SGTFAPISDRYSPDLRQLILSMLNLD 240
Query: 674 PSDRPSATELLQDAL 688
PS RP ++++ +
Sbjct: 241 PSKRPQLSQIMAQPI 255
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The cGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK isoforms
from different genes, cGKI and cGKII. cGKI exists as two
splice variants, cGKI-alpha and cGKI-beta. cGK consists
of an N-terminal regulatory domain containing a
dimerization and an autoinhibitory pseudosubstrate
region, two cGMP-binding domains, and a C-terminal
catalytic domain. Binding of cGMP to both binding sites
releases the inhibition of the catalytic center by the
pseudosubstrate region, allowing autophosphorylation and
activation of the kinase. cGKI is a soluble protein
expressed in all smooth muscles, platelets, cerebellum,
and kidney. It is also expressed at lower concentrations
in other tissues. cGKII is a membrane-bound protein that
is most abundantly expressed in the intestine. It is
also present in the brain nuclei, adrenal cortex,
kidney, lung, and prostate. cGKI is involved in the
regulation of smooth muscle tone, smooth cell
proliferation, and platelet activation. cGKII plays a
role in the regulation of secretion, such as renin
secretion by the kidney and aldosterone secretion by the
adrenal. It also regulates bone growth and the circadian
rhythm.
Length = 262
Score = 108 bits (273), Expect = 3e-26
Identities = 83/306 (27%), Positives = 123/306 (40%), Gaps = 85/306 (27%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDR----ILREVATLSRLQHQHVVR 444
LG GGFG V L K K R +A+K ++ K V I E L H +V+
Sbjct: 1 LGVGGFGRVELVKVKSKNRTFALKCVK---KRHIVETGQQEHIFSEKEILEECNHPFIVK 57
Query: 445 YYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCP- 503
Y+ TF ++ Y+Y+ MEYC
Sbjct: 58 LYR------------------------TFKDKK----------------YIYMLMEYCLG 77
Query: 504 RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDF 563
L + FD+ A +V ++H +GII+RDL P N+ D+ +K+ DF
Sbjct: 78 GELWTILRDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDF 137
Query: 564 GLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ-----VGTYFYTAPEIEQGWPK-IDEKAD 617
G AK LK +GQ GT Y APEI K D D
Sbjct: 138 GFAKKLK---------------------SGQKTWTFCGTPEYVAPEIILN--KGYDFSVD 174
Query: 618 MYSLGIVFFELWH---PFSTAMERQIVLSD--LKQKGELP-PSWVAKFSEQESLLRRLMS 671
+SLGI+ +EL PF E + + + LK G+L P+++ K + L+++L+
Sbjct: 175 YWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKLEFPNYIDK--AAKDLIKQLLR 232
Query: 672 PSPSDR 677
+P +R
Sbjct: 233 RNPEER 238
>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal
Bck1-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Bck1-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Saccharomyces cerevisiae Bck1 and Schizosaccharomyces
pombe Mkh1, and related proteins. MAPKKKs phosphorylate
and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks),
which in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Budding
yeast Bck1 is part of the cell integrity MAPK pathway,
which is activated by stresses and aggressions to the
cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and
the MAPK Slt2 make up the cascade that is important in
the maintenance of cell wall homeostasis. Fission yeast
Mkh1 is involved in MAPK cascades regulating cell
morphology, cell wall integrity, salt resistance, and
filamentous growth in response to stress.
Length = 272
Score = 109 bits (273), Expect = 3e-26
Identities = 82/316 (25%), Positives = 129/316 (40%), Gaps = 75/316 (23%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKI--------RLKDKSLPVNDRILREVATLSRLQHQ 440
+G G +G V L N G AVK++ R + + + E+ TL L H
Sbjct: 9 IGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++V+Y G E E YL I +E
Sbjct: 69 NIVQYL--------------------------------------GFETTEE--YLSIFLE 88
Query: 501 YCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
Y P ++ +Y F+++L Q++EGLA++H +GI+HRDL +N+ DA K
Sbjct: 89 YVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICK 148
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI----EQGWPKIDEK 615
I DFG++K +D + G+ F+ APE+ QG+ K
Sbjct: 149 ISDFGISK-------------KSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGY---SAK 192
Query: 616 ADMYSLGIVFFELW---HPFST--AMERQIVLSDLKQKGELPPSWVAKFS-EQESLLRRL 669
D++SLG V E++ P+S A+ L + + +PP S L
Sbjct: 193 VDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNAC 252
Query: 670 MSPSPSDRPSATELLQ 685
+ +P +RP+A ELLQ
Sbjct: 253 FTINPDNRPTARELLQ 268
>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 110 bits (278), Expect = 2e-25
Identities = 100/456 (21%), Positives = 164/456 (35%), Gaps = 71/456 (15%)
Query: 751 DTELRDYVVQVTKEMFRQHCAK-----HLEIEPMYLLGDCPQFKRNTVKLL----THGGD 801
D LR+Y+ +++F + E ++ + K + GG
Sbjct: 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARK-SGEETDVVEKEMYTFKDKGGR 75
Query: 802 LLELSHELRLPFIRWAISN---QKSSFKRYEISSVYRRAIGHSPP--NRY---LQGDFDI 853
L L EL P R N K Y V+R + P RY Q ++
Sbjct: 76 SLALRPELTAPVARAVAENKLDLPKPLKLYYFGPVFR----YERPQKGRYRQFYQFGVEV 131
Query: 854 IGGASALTEAEVLKVTMDIVTRFFHAESCDIHLNHGDLLEAIWSWAGIKAEHREKVAELL 913
IG S +AEV+ + ++I+ + +N +LE + GI + RE + L
Sbjct: 132 IGSDSPDADAEVIALAVEILEALG-IGGFTLEINSRGILEGRLEYLGI--DQREALLRYL 188
Query: 914 AMMGSLRPQSSEWKSKWVVIRRQLLQELNLAEAVVNRLQTVGLRFCGAADQAL----PRL 969
K I + L E + N L+ L +DQ L P L
Sbjct: 189 --------------DKLDKIGKLELDEDSKRRLKTNPLRV--LDSKKDSDQELLKNAPEL 232
Query: 970 RGALPADKPTRKALDEL--YLRIWRIEKNIYIDALMPPIESYHRNLFFQVFSVKEKYPAT 1027
L D+ + + L+EL L I + ID + Y+ F+ +
Sbjct: 233 LDYL--DEESLEHLEELLALLDALGI--SYEIDPSLVRGLDYYTGTVFEAVTDGLG---- 284
Query: 1028 LVEGTLLAVGGRYDYLLHRMWDREYVGYASRTNPP-SGVGASLALETIIQHYPVDFKPVR 1086
+G++ GGRYD L+ P VG ++ +E +I + K
Sbjct: 285 -AQGSVCG-GGRYDGLVEEF-----------GGKPTPAVGFAIGVERLILALEEEGKEDP 331
Query: 1087 NEAGTSVLVCSRGGGGLLVERMELVAELWEENIKAQFVPVPDPSLTEQYEYASEHDIKCL 1146
E V V G E ++L +L I + V L +Q++YA + +
Sbjct: 332 VETRVDVYVVP-LGEDAEPEALKLAQKLRAAGISVE-VDYSGRKLKKQFKYADKLGARFA 389
Query: 1147 VILTDTGAQKGLVKVRHLDVKKEKEVQRESLVRFLL 1182
VIL + G+V V+ L +++EV + LV L
Sbjct: 390 VILGEDELANGVVTVKDLATGEQEEVPLDELVEELK 425
>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein
Serine/Threonine Kinases, Mammalian Ste20-like protein
kinase 1 and 2. Serine/threonine kinases (STKs),
mammalian Ste20-like protein kinase 1 (MST1) and MST2
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MST1/2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST1, MST2, and
related proteins including Drosophila Hippo and
Dictyostelium discoideum Krs1 (kinase responsive to
stress 1). MST1/2 and Hippo are involved in a conserved
pathway that governs cell contact inhibition, organ size
control, and tumor development. MST1 activates the
mitogen-activated protein kinases (MAPKs) p38 and c-Jun
N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and
MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase
kinase kinase (MAPKKKK). Activation of JNK by MST1 leads
to caspase activation and apoptosis. MST1 has also been
implicated in cell proliferation and differentiation.
Krs1 may regulate cell growth arrest and apoptosis in
response to cellular stress.
Length = 256
Score = 105 bits (263), Expect = 6e-25
Identities = 84/330 (25%), Positives = 133/330 (40%), Gaps = 103/330 (31%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
F+ L+ LG G +G V +K G+ A+K + ++ I++E++ L +
Sbjct: 3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVE----EDLQEIIKEISILKQCDSP 58
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++V+YY GS F N T L+I ME
Sbjct: 59 YIVKYY-----------------GSY------FKN-----------------TDLWIVME 78
Query: 501 YCP------------RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPN 548
YC +TL + +E+A L Q ++GL ++H IHRD+
Sbjct: 79 YCGAGSVSDIMKITNKTLTE---------EEIAAIL-YQTLKGLEYLHSNKKIHRDIKAG 128
Query: 549 NIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQG 608
NI + K+ DFG++ QL D +T +GT F+ APE+ Q
Sbjct: 129 NILLNEEGQAKLADFGVS-----GQL-TDTMAKRNT---------VIGTPFWMAPEVIQE 173
Query: 609 WPKIDEKADMYSLGIVFFELWH---PFST--AMERQIVLSDLKQKGELPPSWVAKFSEQE 663
+ KAD++SLGI E+ P+S M R I + + K PP S+ E
Sbjct: 174 -IGYNNKADIWSLGITAIEMAEGKPPYSDIHPM-RAIFM--IPNK---PPP---TLSDPE 223
Query: 664 -------SLLRRLMSPSPSDRPSATELLQD 686
+++ + P +RPSA +LLQ
Sbjct: 224 KWSPEFNDFVKKCLVKDPEERPSAIQLLQH 253
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 104 bits (262), Expect = 1e-24
Identities = 76/317 (23%), Positives = 112/317 (35%), Gaps = 82/317 (25%)
Query: 386 LQPLGHGGFGHVVLCKNKLDGRHY----AVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
+ LG G FG V K K G AVK ++ +D S + LRE + +L H +
Sbjct: 4 GKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLK-EDASEQQIEEFLREARIMRKLDHPN 62
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
VV+ GV E LYI MEY
Sbjct: 63 VVKLL------GVC----------------------------------TEEEPLYIVMEY 82
Query: 502 CPR-TLRQVFESYDHFDKELAWHLF-RQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
L F QI G+ ++ + IHRDL N +K
Sbjct: 83 MEGGDLLSYLRKNRPKLSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVK 142
Query: 560 IGDFGLAKFLKLEQLD--QDAAFPTDTGGVSVDGTGQVGTYFYTAPE-IEQGWPKIDEKA 616
I DFGL++ L + + P + APE +++G K K+
Sbjct: 143 ISDFGLSRDLYDDDYYRKRGGKLP----------------IRWMAPESLKEG--KFTSKS 184
Query: 617 DMYSLGIVFFELWH----PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMS- 671
D++S G++ +E++ P+ M + VL LK LP L LM
Sbjct: 185 DVWSFGVLLWEIFTLGEQPYP-GMSNEEVLEYLKNGYRLPQP-----PNCPPELYDLMLQ 238
Query: 672 ---PSPSDRPSATELLQ 685
P DRP+ +EL++
Sbjct: 239 CWAEDPEDRPTFSELVE 255
>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity.
Phosphotransferases. The specificity of this class of
kinases can not be predicted. Possible dual-specificity
Ser/Thr/Tyr kinase.
Length = 258
Score = 104 bits (262), Expect = 1e-24
Identities = 79/323 (24%), Positives = 119/323 (36%), Gaps = 93/323 (28%)
Query: 386 LQPLGHGGFGHVVLC--KNKLDGRHY--AVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
+ LG G FG V K K DG+ AVK ++ +D S + LRE + +L H +
Sbjct: 4 GKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLK-EDASEQQIEEFLREARIMRKLDHPN 62
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
+V+ GV T +E L I MEY
Sbjct: 63 IVKLL------GV----------------------------CTEEEP------LMIVMEY 82
Query: 502 CP--------RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD 553
P R R S A QI G+ ++ + IHRDL N
Sbjct: 83 MPGGDLLDYLRKNRPKELSLSDL-LSFAL----QIARGMEYLESKNFIHRDLAARNCLVG 137
Query: 554 ARNDIKIGDFGLAKFLKLEQLD--QDAAFPTDTGGVSVDGTGQVGTYFYTAPE-IEQGWP 610
+KI DFGL++ L + + P + APE +++G
Sbjct: 138 ENLVVKISDFGLSRDLYDDDYYKVKGGKLP----------------IRWMAPESLKEG-- 179
Query: 611 KIDEKADMYSLGIVFFELWH----PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLL 666
K K+D++S G++ +E++ P+ M VL LK+ LP L
Sbjct: 180 KFTSKSDVWSFGVLLWEIFTLGEEPYP-GMSNAEVLEYLKKGYRLPKP-----PNCPPEL 233
Query: 667 RRLMS----PSPSDRPSATELLQ 685
+LM P DRP+ +EL++
Sbjct: 234 YKLMLQCWAEDPEDRPTFSELVE 256
>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity
Protein Kinase, Mitogen-Activated Protein Kinase Kinase.
Protein kinases (PKs), MAP kinase kinase (MAPKK)
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK or MAP2K), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK or
MAP3K). MAPKKs are dual-specificity PKs that
phosphorylate their downstream targets, MAPKs, at
specific threonine and tyrosine residues. There are
three MAPK subfamilies: extracellular signal-regulated
kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In
mammalian cells, there are seven MAPKKs (named MKK1-7)
and 20 MAPKKKs. Each MAPK subfamily can be activated by
at least two cognate MAPKKs and by multiple MAPKKKs.
Length = 265
Score = 104 bits (261), Expect = 1e-24
Identities = 78/320 (24%), Positives = 125/320 (39%), Gaps = 79/320 (24%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
+D E L LG G G V ++ G+ AVK IRL+ + +ILRE+ L +
Sbjct: 1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINE-AIQKQILRELDILHKCNSP 59
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++V +Y A++ +GD + I ME
Sbjct: 60 YIVGFYGAFYN------NGD----------------------------------ISICME 79
Query: 501 YCPRT-LRQVF-ESYDHFDKELAWHLFRQIVEGLAHIHGQ-GIIHRDLTPNNIFFDARND 557
Y L ++ E + + + +++GL ++H + IIHRD+ P+NI ++R
Sbjct: 80 YMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQ 139
Query: 558 IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ--VGTYFYTAPEIEQGWPKIDEK 615
IK+ DFG++ L V+ + VGT Y APE QG K
Sbjct: 140 IKLCDFGVSGQL-------------------VNSLAKTFVGTSSYMAPERIQG-NDYSVK 179
Query: 616 ADMYSLGIVFFEL-------WHPFSTAMERQIVLSDLKQ--KGELPPSWVAKFSEQ-ESL 665
+D++SLG+ EL + L+ P KFS +
Sbjct: 180 SDIWSLGLSLIELATGRFPYPPENDPPDG---IFELLQYIVNEPPPRLPSGKFSPDFQDF 236
Query: 666 LRRLMSPSPSDRPSATELLQ 685
+ + P +RPS ELL+
Sbjct: 237 VNLCLIKDPRERPSYKELLE 256
>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent
protein Kinase 1-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 1 (CDK1)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes, plants, and yeasts, as well as CDK2 and
CDK3. CDK1 is also called Cell division control protein
2 (Cdc2) or p34 protein kinase, and is regulated by
cyclins A, B, and E. The CDK1/cyclin A complex controls
G2 phase entry and progression while the CDK1/cyclin B
complex is critical for G2 to M phase transition. CDK2
is regulated by cyclin E or cyclin A. Upon activation by
cyclin E, it phosphorylates the retinoblastoma (pRb)
protein which activates E2F mediated transcription and
allows cells to move into S phase. The CDK2/cyclin A
complex plays a role in regulating DNA replication.
Studies in knockout mice revealed that CDK1 can
compensate for the loss of the cdk2 gene as it can also
bind cyclin E and drive G1 to S phase transition. CDK3
is regulated by cyclin C and it phosphorylates pRB
specifically during the G0/G1 transition. This
phosphorylation is required for cells to exit G0
efficiently and enter the G1 phase.
Length = 283
Score = 102 bits (256), Expect = 1e-23
Identities = 69/249 (27%), Positives = 110/249 (44%), Gaps = 59/249 (23%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+++++ +G G +G V ++KL G A+KKIRL+ + V +RE++ L L H ++
Sbjct: 1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNI 60
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
VR DV ENKL Y+ E+
Sbjct: 61 VRLL-----------------------------------DVVHSENKL-----YLVFEFL 80
Query: 503 PRTLRQVFESYDHF--DKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKI 560
L++ +S D L Q+++G+A+ H ++HRDL P N+ D +K+
Sbjct: 81 DLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKL 140
Query: 561 GDFGLAKFLKLEQLDQDAAFPTDTGGVSVDG-TGQVGTYFYTAPEIEQGWPKIDEKADMY 619
DFGLA+ AF GV V T +V T +Y APEI G + D++
Sbjct: 141 ADFGLAR-----------AF-----GVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIW 184
Query: 620 SLGIVFFEL 628
S+G +F E+
Sbjct: 185 SIGCIFAEM 193
>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein
Serine/Threonine Kinases, Oxidative stress response
kinase and Ste20-related proline alanine-rich kinase.
Serine/threonine kinases (STKs), oxidative stress
response kinase (OSR1) and Ste20-related proline
alanine-rich kinase (SPAK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The OSR1 and SPAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. SPAK is also referred to as STK39 or PASK
(proline-alanine-rich STE20-related kinase). OSR1 and
SPAK regulate the activity of cation-chloride
cotransporters through direct interaction and
phosphorylation. They are also implicated in
cytoskeletal rearrangement, cell differentiation,
transformation and proliferation. OSR1 and SPAK contain
a conserved C-terminal (CCT) domain, which recognizes a
unique motif ([RK]FX[VI]) present in their activating
kinases (WNK1/WNK4) and their substrates.
Length = 267
Score = 101 bits (254), Expect = 1e-23
Identities = 76/323 (23%), Positives = 131/323 (40%), Gaps = 78/323 (24%)
Query: 381 NDFEELQPLGHGGFGHV--VLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQ 438
+D+E ++ +G G V +C A+K+I L +K D + +EV +S+
Sbjct: 1 DDYELIEVIGVGATAVVYAAICLPN--NEKVAIKRIDL-EKCQTSVDELRKEVQAMSQCN 57
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H +VV+YY ++ V G E L++
Sbjct: 58 HPNVVKYYTSF---------------------------------VVGDE-------LWLV 77
Query: 499 MEY-----CPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD 553
M Y ++ + D+ + + +++++GL ++H G IHRD+ NI
Sbjct: 78 MPYLSGGSLLDIMKSSY-PRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLG 136
Query: 554 ARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ--VGTYFYTAPEIEQGWPK 611
+KI DFG++ L GG + VGT + APE+ +
Sbjct: 137 EDGSVKIADFGVSASLA-------------DGGDRTRKVRKTFVGTPCWMAPEVMEQVHG 183
Query: 612 IDEKADMYSLGIVFFELWH---PFSTAMERQIVLSDLKQKGELPPSW-----VAKFSEQ- 662
D KAD++S GI EL P+S ++++ L+ PPS K+S+
Sbjct: 184 YDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQND---PPSLETGADYKKYSKSF 240
Query: 663 ESLLRRLMSPSPSDRPSATELLQ 685
++ + PS RP+A ELL+
Sbjct: 241 RKMISLCLQKDPSKRPTAEELLK 263
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 4. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. Nek4 is highly abundant in the
testis. Its specific function is unknown.
Length = 257
Score = 100 bits (250), Expect = 3e-23
Identities = 77/308 (25%), Positives = 133/308 (43%), Gaps = 67/308 (21%)
Query: 386 LQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRY 445
++ +G G +G V L +++ DG+ Y +KK+ L++ S +E LS+L+H ++V Y
Sbjct: 5 VRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAY 64
Query: 446 YQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCP-- 503
++W + E LYI M +C
Sbjct: 65 RESW---------------------------------------EGEDGLLYIVMGFCEGG 85
Query: 504 ---RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKI 560
L++ ++ + W F QI L ++H + I+HRDL N+F N IK+
Sbjct: 86 DLYHKLKEQKGKLLPENQVVEW--FVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKV 143
Query: 561 GDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYS 620
GD G+A+ L+ Q D + +GT +Y +PE+ P + K+D+++
Sbjct: 144 GDLGIARVLE-NQCDMASTL--------------IGTPYYMSPELFSNKP-YNYKSDVWA 187
Query: 621 LGIVFFE---LWHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
LG +E L H F+ +V + +G+LPP E L+ ++S P R
Sbjct: 188 LGCCVYEMATLKHAFNAKDMNSLVYRII--EGKLPPMPKDYSPELGELIATMLSKRPEKR 245
Query: 678 PSATELLQ 685
PS +L+
Sbjct: 246 PSVKSILR 253
>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine
Kinases, Fungal Mitogen-Activated Protein Kinases Sty1
and Hog1. Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Sty1/Hog1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of the MAPKs Sty1
from Schizosaccharomyces pombe, Hog1 from Saccharomyces
cerevisiae, and similar proteins. MAPKs are important
mediators of cellular responses to extracellular
signals. Sty1 and Hog1 are stress-activated MAPKs that
partipate in transcriptional regulation in response to
stress. Sty1 is activated in response to oxidative
stress, osmotic stress, and UV radiation. Sty1 is
regulated by the MAP2K Wis1, which is activated by the
MAP3Ks Wis4 and Win1, which receive signals of the
stress condition from membrane-spanning histidine
kinases Mak1-3. Activated Sty1 stabilizes the Atf1
transcription factor and induces transcription of
Atf1-dependent genes of the core environmetal stress
response (CESR). Hog1 is the key element in the high
osmolarity glycerol (HOG) pathway and is activated upon
hyperosmotic stress. Activated Hog1 accumulates in the
nucleus and regulates stress-induced transcription. The
HOG pathway is mediated by two transmembrane
osmosensors, Sln1 and Sho1.
Length = 328
Score = 101 bits (253), Expect = 5e-23
Identities = 95/380 (25%), Positives = 151/380 (39%), Gaps = 105/380 (27%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVN-DRILREVATLSRLQH 439
N + +LQP+G G FG V +++L G++ A+KKI +K S PV R RE+ L L+H
Sbjct: 10 NRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKI-MKPFSTPVLAKRTYRELKLLKHLRH 68
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
++++ ++D F + VT +L T L+ +
Sbjct: 69 ENII---------SLSDI---------------FISPLEDIYFVT----ELLGTDLHRLL 100
Query: 500 EYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
P +K+ + QI+ GL ++H G++HRDL P+NI + D+K
Sbjct: 101 TSRP------------LEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLK 148
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMY 619
I DFGLA+ QD TG V T +Y APEI W K D + D++
Sbjct: 149 ICDFGLARI-------QDPQM-----------TGYVSTRYYRAPEIMLTWQKYDVEVDIW 190
Query: 620 SLGIVFFELW------------HPFSTAME------------------RQIVLSDLKQKG 649
S G +F E+ + FS + + V S L ++
Sbjct: 191 SAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQS-LPKRE 249
Query: 650 ELPPSWVAKFSEQE--SLLRRLMSPSPSDRPSATELLQDALPPQMEYELLDNILRMMHSS 707
+P S K ++ LL +++ P R SA E L L H
Sbjct: 250 PVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALA------------HPYLAPYHDP 297
Query: 708 EDTSIYDKVVSSIFDEETLD 727
D + ++ F++ L
Sbjct: 298 TDEPVAEEKFDWSFNDADLP 317
>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 1 from higher
eukaryotes-like. Serine/Threonine Kinases (STKs),
Cyclin-Dependent protein Kinase 1 (CDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes. CDK1 is also called Cell division control
protein 2 (Cdc2) or p34 protein kinase, and is regulated
by cyclins A, B, and E. The CDK1/cyclin A complex
controls G2 phase entry and progression. CDK1/cyclin A2
has also been implicated as an important regulator of S
phase events. The CDK1/cyclin B complex is critical for
G2 to M phase transition. It induces mitosis by
activating nuclear enzymes that regulate chromatin
condensation, nuclear membrane degradation,
mitosis-specific microtubule and cytoskeletal
reorganization. CDK1 also associates with cyclin E and
plays a role in the entry into S phase. CDK1
transcription is stable throughout the cell cycle but is
modulated in some pathological conditions. It may play a
role in regulating apoptosis under these conditions. In
breast cancer cells, HER2 can mediate apoptosis by
inactivating CDK1. Activation of CDK1 may contribute to
HIV-1 induced apoptosis and neuronal apoptosis in
neurodegenerative diseases.
Length = 285
Score = 100 bits (250), Expect = 5e-23
Identities = 70/252 (27%), Positives = 114/252 (45%), Gaps = 60/252 (23%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
D+ +++ +G G +G V +NK G+ A+KKIRL+ + V +RE++ L LQH +
Sbjct: 1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPN 60
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
+V DV QE++L Y+ E+
Sbjct: 61 IVCL-----------------------------------QDVLMQESRL-----YLIFEF 80
Query: 502 CPRTLRQVFESY---DHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
L++ +S + D EL QI++G+ H + ++HRDL P N+ D + I
Sbjct: 81 LSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVI 140
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDG-TGQVGTYFYTAPEIEQGWPKIDEKAD 617
K+ DFGLA+ AF G+ V T +V T +Y APE+ G P+ D
Sbjct: 141 KLADFGLAR-----------AF-----GIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVD 184
Query: 618 MYSLGIVFFELW 629
++S+G +F E+
Sbjct: 185 IWSIGTIFAEMA 196
>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 5.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 5 (CDK5) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK5 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK5
is unusual in that it is regulated by non-cyclin
proteins, p35 and p39. It is highly expressed in the
nervous system and is critical in normal neural
development and function. It plays a role in neuronal
migration and differentiation, and is also important in
synaptic plasticity and learning. CDK5 also participates
in protecting against cell death and promoting
angiogenesis. Impaired CDK5 activity is implicated in
Alzheimer's disease, amyotrophic lateral sclerosis,
Parkinson's disease, Huntington's disease and acute
neuronal injury.
Length = 284
Score = 100 bits (250), Expect = 5e-23
Identities = 86/337 (25%), Positives = 132/337 (39%), Gaps = 88/337 (26%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+E+L+ +G G +G V KN+ A+K++RL D V LRE+ L L+H+++
Sbjct: 2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI 61
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
VR Y DV + KL + EYC
Sbjct: 62 VRLY-----------------------------------DVLHSDKKLT-----LVFEYC 81
Query: 503 PRTLRQVFESYD-HFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
+ L++ F+S + D E+ Q+++GLA H ++HRDL P N+ + ++K+
Sbjct: 82 DQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLA 141
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDG-TGQVGTYFYTAPEIEQGWPKIDEKADMYS 620
DFGLA+ AF G+ V + +V T +Y P++ G DM+S
Sbjct: 142 DFGLAR-----------AF-----GIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWS 185
Query: 621 LGIVFFEL--------------------WHPFSTAMERQIV-LSDLKQKGELPP-----S 654
G +F EL + T E +S L P S
Sbjct: 186 AGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTS 245
Query: 655 WVAK----FSEQESLLRRLMSPSPSDRPSATELLQDA 687
V S LL+ L+ +P R SA E LQ
Sbjct: 246 LVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQHP 282
>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine
Kinase, cAMP-dependent protein kinase. Serine/Threonine
Kinases (STKs), cAMP-dependent protein kinase (PKA)
subfamily, catalytic (c) subunit. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This subfamily is composed of the
cAMP-dependent proteins kinases, PKA and PRKX. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic (C) subunits
with a dimer of regulatory (R) subunits. Activation is
achieved through the binding of the important second
messenger cAMP to the R subunits, which leads to the
dissociation of PKA into the R dimer and two active C
subunits. PKA is present ubiquitously in cells and
interacts with many different downstream targets. It
plays a role in the regulation of diverse processes such
as growth, development, memory, metabolism, gene
expression, immunity, and lipolysis.
Length = 290
Score = 100 bits (251), Expect = 5e-23
Identities = 79/317 (24%), Positives = 128/317 (40%), Gaps = 97/317 (30%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKK------IRLKDKSLPVNDRILREVATL 434
+DFE ++ LG G FG V+L ++K G++YA+K ++LK + +L E L
Sbjct: 1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQV-----EHVLNEKRIL 55
Query: 435 SRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTY 494
++H +V Y +F Q++
Sbjct: 56 QSIRHPFLVNLY------------------------GSF------------QDDS----N 75
Query: 495 LYIQMEYCP-----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNN 549
LY+ MEY P LR+ F + +A Q+V L ++H I++RDL P N
Sbjct: 76 LYLVMEYVPGGELFSHLRKS----GRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPEN 131
Query: 550 IFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQV-GTYFYTAPEIEQG 608
+ D+ IKI DFG AK +K T + GT Y APEI
Sbjct: 132 LLLDSDGYIKITDFGFAKRVK-------------------GRTYTLCGTPEYLAPEIILS 172
Query: 609 WPKIDEKADMYSLGIVFFEL---WHPFST----AMERQIVLSDLKQKGELPPSWVAKFSE 661
+ D ++LGI+ +E+ + PF + +I+ ++ PS+ FS
Sbjct: 173 KGY-GKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGKVRF-----PSF---FSP 223
Query: 662 Q-ESLLRRLMSPSPSDR 677
+ L+R L+ + R
Sbjct: 224 DAKDLIRNLLQVDLTKR 240
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 10. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 10 (Nek10)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek10 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. No function has yet been ascribed to Nek10.
The gene encoding Nek10 is a putative causative gene for
breast cancer; it is located within a breast cancer
susceptibility loci on chromosome 3p24.
Length = 269
Score = 99.5 bits (248), Expect = 6e-23
Identities = 86/330 (26%), Positives = 138/330 (41%), Gaps = 97/330 (29%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHY-AVKKI-----------RLKDKSLPVNDRILRE 430
+ L+ LG G FG V + K +G++ A+K+I R +DKS+ I+ E
Sbjct: 2 YAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSI---GDIVSE 58
Query: 431 VATL-SRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENK 489
V + +L+H ++VRYY+ +
Sbjct: 59 VTIIKEQLRHPNIVRYYKTF---------------------------------------- 78
Query: 490 LESTYLYIQMEY---CPRTLRQVF----ESYDHFDKELAWHLFRQIVEGLAHIHGQG-II 541
LE+ LYI M+ P L + F E F +E W++F Q+V L ++H + I+
Sbjct: 79 LENDRLYIVMDLIEGAP--LGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIV 136
Query: 542 HRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYT 601
HRDLTPNNI + + I DFGLAK Q ++ T VGT Y+
Sbjct: 137 HRDLTPNNIMLGEDDKVTITDFGLAK-----QKQPESKL-----------TSVVGTILYS 180
Query: 602 APEIEQGWPKIDEKADMYSLGIVFFE---LWHPFSTA----MERQIVLSDLKQKGELPPS 654
PEI + P EKAD+++ G + ++ L PF + + +IV + P
Sbjct: 181 CPEIVKNEP-YGEKADVWAFGCILYQMCTLQPPFYSTNMLSLATKIV------EAVYEPL 233
Query: 655 WVAKFSEQESLL-RRLMSPSPSDRPSATEL 683
+SE + + ++P RP ++
Sbjct: 234 PEGMYSEDVTDVITSCLTPDAEARPDIIQV 263
>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Rho-associated
coiled-coil containing protein kinase (ROCK) and Nuclear
Dbf2-Related (NDR)-like kinase subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK- and NDR-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include ROCK and
ROCK-like proteins such as DMPK, MRCK, and CRIK, as well
as NDR and NDR-like proteins such as LATS, CBK1 and
Sid2p. ROCK and CRIK are effectors of the small GTPase
Rho, while MRCK is an effector of the small GTPase
Cdc42. NDR and NDR-like kinases contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. Proteins in this subfamily are involved in
regulating many cellular functions including
contraction, motility, division, proliferation,
apoptosis, morphogenesis, and cytokinesis.
Length = 350
Score = 100 bits (252), Expect = 1e-22
Identities = 102/382 (26%), Positives = 154/382 (40%), Gaps = 86/382 (22%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
+DFE ++ +G G FG V L ++K G+ YA+K +R D +++ R Q
Sbjct: 1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSD--------MIK------RNQIA 46
Query: 441 HVVRYYQAWFETGVADF--DGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
HV E D D DS W S F Q+ + +LY+
Sbjct: 47 HV------RAER---DILADADSPWIVKLYYS--F------------QDEE----HLYLV 79
Query: 499 MEYCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
MEY P L + D F +E A ++V L +H G IHRD+ P+NI DA
Sbjct: 80 MEYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGH 139
Query: 558 IKIGDFGLAK--------FLKLEQLDQDAAFPTDTGGVSVDGTGQ-------VGTYFYTA 602
IK+ DFGL K L + F + D + VGT Y A
Sbjct: 140 IKLADFGLCKKMNKAKDREYYLNDS-HNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIA 198
Query: 603 PEIEQGWPKIDEKADMYSLGIVFFELWH---PFS--TAMERQIVLSDLKQKGELPPSWVA 657
PE+ +G P + D +SLG++ +E+ + PF T E + + K+ PP
Sbjct: 199 PEVLRGTP-YGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPPD--P 255
Query: 658 KFS-EQESLLRRLMSPSPSDR-PSATELLQDALPPQMEYELLDNILR-------MMHSSE 708
S E L+ RL+ P DR S E+ +++E N+ + S
Sbjct: 256 PVSPEAIDLICRLLCD-PEDRLGSFEEIKSHPFFKGIDWE---NLRETKPPFVPELSSPL 311
Query: 709 DTSIYDKVVSSIFDEETLDMKH 730
DTS +D F+++ +
Sbjct: 312 DTSNFDD-----FEDDKDLSDY 328
>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.
Length = 258
Score = 98.3 bits (246), Expect = 1e-22
Identities = 77/324 (23%), Positives = 125/324 (38%), Gaps = 87/324 (26%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHY----AVKKIRLKDKSLPVNDRILREVATLSRLQ 438
E + LG G FG V K DG AVK ++ + S + L E + + +L
Sbjct: 1 LELGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLK-EGASEEEREEFLEEASIMKKLS 59
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H ++VR GV T E LYI
Sbjct: 60 HPNIVRLL------GV----------------------------CTQGE------PLYIV 79
Query: 499 MEYCP----RT-LRQVFESYDHFDK-ELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFF 552
EY P LR+ E D ++A QI +G+ ++ + +HRDL N
Sbjct: 80 TEYMPGGDLLDFLRKHGEKLTLKDLLQMAL----QIAKGMEYLESKNFVHRDLAARNCLV 135
Query: 553 DARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE-IEQGWPK 611
+KI DFGL++ + + D G + + APE ++ G K
Sbjct: 136 TENLVVKISDFGLSRDI----------YEDDYYRKRGGGKLPI---KWMAPESLKDG--K 180
Query: 612 IDEKADMYSLGIVFFELWH----PFSTAMERQIVLSDLKQKGELP-----PSWVAKFSEQ 662
K+D++S G++ +E++ P+ M + VL L+ LP P + +
Sbjct: 181 FTSKSDVWSFGVLLWEIFTLGEQPYP-GMSNEEVLELLEDGYRLPRPENCPDELYE---- 235
Query: 663 ESLLRRLMSPSPSDRPSATELLQD 686
L+ + + P DRP+ +EL++D
Sbjct: 236 --LMLQCWAYDPEDRPTFSELVED 257
>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ
cell-Associated Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Male germ
cell-Associated Kinase (MAK)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of human MAK and
MAK-related kinase (MRK), Saccharomyces cerevisiae
Ime2p, Schizosaccharomyces pombe Mei4-dependent protein
3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5,
Arabidopsis thaliana MHK, and similar proteins. These
proteins play important roles during meiosis. MAK is
highly expressed in testicular cells specifically in the
meiotic phase, but is not essential for spermatogenesis
and fertility. It functions as a coactivator of the
androgen receptor in prostate cells. MRK, also called
Intestinal Cell Kinase (ICK), is expressed ubiquitously,
with highest expression in the ovary and uterus. A
missense mutation in MRK causes
endocrine-cerebro-osteodysplasia (ECO), suggesting that
this protein plays an important role in the development
of many organs. MAK and MRK may be involved in
regulating cell cycle and cell fate. Ime2p is a
meiosis-specific kinase that is important during meiotic
initiation and during the later stages of meiosis. Mde3
functions downstream of the transcription factor Mei-4
which is essential for meiotic prophase I.
Length = 283
Score = 98.4 bits (246), Expect = 2e-22
Identities = 70/251 (27%), Positives = 101/251 (40%), Gaps = 64/251 (25%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRI-LREVATLSRLQ-HQ 440
++ ++ LG G FG V L +NK G A+KK +K K + + LREV +L +L H
Sbjct: 1 YKVIKQLGDGTFGSVYLARNKETGELVAIKK--MKKKFYSWEECMNLREVKSLRKLNEHP 58
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++V+ E E+ LY E
Sbjct: 59 NIVKLK----------------------------------------EVFRENDELYFVFE 78
Query: 501 YCPRTLRQVFESYDH--FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
Y L Q+ + F + + + QI++GLAHIH G HRDL P N+ +
Sbjct: 79 YMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVV 138
Query: 559 KIGDFGLAKFLKLEQLDQDAAFP-TDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKAD 617
KI DFGLA+ E + P TD V T +Y APEI D
Sbjct: 139 KIADFGLAR----EIRSRP---PYTD----------YVSTRWYRAPEILLRSTSYSSPVD 181
Query: 618 MYSLGIVFFEL 628
+++LG + EL
Sbjct: 182 IWALGCIMAEL 192
>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 7.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 7 (CDK7) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK7 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK7
plays essential roles in the cell cycle and in
transcription. It associates with cyclin H and MAT1 and
acts as a CDK-Activating Kinase (CAK) by phosphorylating
and activating cell cycle CDKs (CDK1/2/4/6). In the
brain, it activates CDK5. CDK7 is also a component of
the general transcription factor TFIIH, which
phosphorylates the C-terminal domain (CTD) of RNA
polymerase II when it is bound with unphosphorylated
DNA, as present in the pre-initiation complex. Following
phosphorylation, the CTD dissociates from the DNA which
allows transcription initiation.
Length = 298
Score = 97.3 bits (243), Expect = 7e-22
Identities = 80/350 (22%), Positives = 133/350 (38%), Gaps = 115/350 (32%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLP---VNDRILREVATLSRLQH 439
+E+ + LG G + V ++K GR A+KKI+L ++ +N LRE+ L L+H
Sbjct: 2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKH 61
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
+++ DV G + + + +
Sbjct: 62 PNIIGLL-----------------------------------DVFGHK-----SNINLVF 81
Query: 500 EYCPRTLRQVFESYDHFDKEL--------AWHLFRQIVEGLAHIHGQGIIHRDLTPNNIF 551
E+ L +V + DK + ++ L + GL ++H I+HRDL PNN+
Sbjct: 82 EFMETDLEKVIK-----DKSIVLTPADIKSYML--MTLRGLEYLHSNWILHRDLKPNNLL 134
Query: 552 FDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPK 611
+ +K+ DFGLA+ F + + T QV T +Y APE+ G
Sbjct: 135 IASDGVLKLADFGLARS-----------FGSP----NRKMTHQVVTRWYRAPELLFGARH 179
Query: 612 IDEKADMYSLGIVFFELWHPFSTAMERQIVL---SDLKQKG------------------E 650
DM+S+G +F EL + R L SD+ Q G
Sbjct: 180 YGVGVDMWSVGCIFAEL-------LLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTS 232
Query: 651 LP----------PSWVAKFS----EQESLLRRLMSPSPSDRPSATELLQD 686
LP F + LL+RL++ +P+ R +A + L+
Sbjct: 233 LPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH 282
>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated
protein kinase kinase kinase kinase-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily includes MAP4K3, MAP4K1,
MAP4K2, MAP4K5, and related proteins. Vertebrate members
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain, similar to
MAP4K4/6. MAP4Ks are involved in some MAPK signaling
pathways that are important in mediating cellular
responses to extracellular signals by activating a MAPK
kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K1, also called haematopoietic
progenitor kinase 1 (HPK1), is a hematopoietic-specific
STK involved in many cellular signaling cascades
including MAPK, antigen receptor, apoptosis, growth
factor, and cytokine signaling. It participates in the
regulation of T cell receptor signaling and T
cell-mediated immune responses. MAP4K2 was referred to
as germinal center (GC) kinase because of its preferred
location in GC B cells. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. It is required in the activation
of S6 kinase by amino acids and for the phosphorylation
of the mTOR-regulated inhibitor of eukaryotic initiation
factor 4E. MAP4K5, also called germinal center
kinase-related enzyme (GCKR), has been shown to activate
the MAPK c-Jun N-terminal kinase (JNK).
Length = 262
Score = 96.2 bits (240), Expect = 9e-22
Identities = 75/326 (23%), Positives = 133/326 (40%), Gaps = 90/326 (27%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDR--ILREVATLSRLQH 439
D+E +Q +G G +G V ++ G A+K I+L+ +D I +E++ L +H
Sbjct: 4 DYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPG----DDFEIIQQEISMLKECRH 59
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
++V Y+ ++ L L+I M
Sbjct: 60 PNIVAYFGSY----------------------------------------LRRDKLWIVM 79
Query: 500 EYCP-RTLRQVF-ESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
EYC +L+ ++ + + ++ R+ ++GLA++H G IHRD+ NI D
Sbjct: 80 EYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGD 139
Query: 558 IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI--EQGWPKIDEK 615
+K+ DFG++ L + + +F +GT ++ APE+ + D K
Sbjct: 140 VKLADFGVSAQLT-ATIAKRKSF--------------IGTPYWMAPEVAAVERKGGYDGK 184
Query: 616 ADMYSLGIVFFELWHPFSTAMERQIVLSDLK---------QKGELPPS------WVAKFS 660
D+++LGI EL E Q + DL + PP W F
Sbjct: 185 CDIWALGITAIEL-------AELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVF- 236
Query: 661 EQESLLRRLMSPSPSDRPSATELLQD 686
+++ ++ P RP+AT+LLQ
Sbjct: 237 --HDFIKKCLTKDPKKRPTATKLLQH 260
>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent
protein Kinase 4 and 6-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) and CDK6-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK4/6-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK4 and CDK6
partner with D-type cyclins to regulate the early G1
phase of the cell cycle. They are the first kinase
activated by mitogenic signals to release cells from the
G0 arrested state. CDK4 and CDK6 are both expressed
ubiquitously, associate with all three D cyclins (D1, D2
and D3), and phosphorylate the retinoblastoma (pRb)
protein. They are also regulated by the INK4 family of
inhibitors which associate with either the CDK alone or
the CDK/cyclin complex. CDK4 and CDK6 show differences
in subcellular localization, sensitivity to some
inhibitors, timing in activation, tumor selectivity, and
possibly substrate profiles. Although CDK4 and CDK6 seem
to show some redundancy, they also have discrete,
nonoverlapping functions. CDK6 plays an important role
in cell differentiation.
Length = 287
Score = 95.8 bits (239), Expect = 2e-21
Identities = 66/256 (25%), Positives = 100/256 (39%), Gaps = 67/256 (26%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIR--LKDKSLPVNDRILREVATLSRLQ-- 438
+EEL +G G +G V ++ GR A+KK+R L ++ +P++ LRE+A L +L+
Sbjct: 1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLS--TLREIALLKQLESF 58
Query: 439 -HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYI 497
H ++VR DV L +
Sbjct: 59 EHPNIVRLL-----------------------------------DVCHGPRTDRELKLTL 83
Query: 498 QMEYCPRTLRQVFESYDH--FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDAR 555
E+ + L E L RQ++ G+ +H I+HRDL P NI +
Sbjct: 84 VFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSD 143
Query: 556 NDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEK 615
+KI DFGLA+ + A T V T +Y APE+
Sbjct: 144 GQVKIADFGLARI-----YSFEMAL-----------TSVVVTLWYRAPEVLLQ----SSY 183
Query: 616 A---DMYSLGIVFFEL 628
A DM+S+G +F EL
Sbjct: 184 ATPVDMWSVGCIFAEL 199
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 100 bits (251), Expect = 2e-21
Identities = 87/338 (25%), Positives = 146/338 (43%), Gaps = 89/338 (26%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQH 439
LN++E ++ +G+G FG V L K+K + K I + +++ EV + L+H
Sbjct: 12 LNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKH 71
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
+++VRY F N+A LYI M
Sbjct: 72 KNIVRYI------------------------DRFLNKANQK--------------LYILM 93
Query: 500 EYC-----PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIH-------GQGIIHRDLTP 547
E+C R +++ ++ + ++ + RQ++ LA+ H G+ ++HRDL P
Sbjct: 94 EFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKP 153
Query: 548 NNIF-----------------FDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVD 590
NIF + R KIGDFGL+K + +E +
Sbjct: 154 QNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSC------------ 201
Query: 591 GTGQVGTYFYTAPEIEQGWPK-IDEKADMYSLGIVFFELWH---PFSTAMERQIVLSDLK 646
VGT +Y +PE+ K D+K+DM++LG + +EL PF A ++S+LK
Sbjct: 202 ----VGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQLISELK 257
Query: 647 QKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELL 684
+ +LP K E L++ L++ S +RPSA + L
Sbjct: 258 RGPDLPIK--GKSKELNILIKNLLNLSAKERPSALQCL 293
>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 2 (CDK2) and CDK3 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK2/3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK2 is regulated by cyclin E or cyclin A.
Upon activation by cyclin E, it phosphorylates the
retinoblastoma (pRb) protein which activates E2F
mediated transcription and allows cells to move into S
phase. The CDK2/cyclin A complex plays a role in
regulating DNA replication. CDK2, together with CDK4,
also regulates embryonic cell proliferation. Despite
these important roles, mice deleted for the cdk2 gene
are viable and normal except for being sterile. This may
be due to compensation provided by CDK1 (also called
Cdc2), which can also bind cyclin E and drive the G1 to
S phase transition. CDK3 is regulated by cyclin C and it
phosphorylates pRB specifically during the G0/G1
transition. This phosphorylation is required for cells
to exit G0 efficiently and enter the G1 phase.
Length = 284
Score = 94.1 bits (234), Expect = 7e-21
Identities = 70/251 (27%), Positives = 110/251 (43%), Gaps = 63/251 (25%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
F++++ +G G +G V +NKL G A+KKIRL ++ V +RE++ L L H ++
Sbjct: 2 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 61
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
V+ DV ENKL Y+ E+
Sbjct: 62 VKLL-----------------------------------DVIHTENKL-----YLVFEFL 81
Query: 503 PRTLRQVFESYDHFDKELAWHLFR----QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
+ L++ ++ + L + Q+++GLA H ++HRDL P N+ + I
Sbjct: 82 HQDLKKFMDASP--LSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAI 139
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDG-TGQVGTYFYTAPEIEQGWPKIDEKAD 617
K+ DFGLA+ AF GV V T +V T +Y APEI G D
Sbjct: 140 KLADFGLAR-----------AF-----GVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVD 183
Query: 618 MYSLGIVFFEL 628
++SLG +F E+
Sbjct: 184 IWSLGCIFAEM 194
>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
MEKK3, MEKK2, and related proteins, all containing an
N-terminal PB1 domain, which mediates oligomerization,
and a C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK2 and MEKK3 activate MEK5 (also called MKK5), which
activates extracellular signal-regulated kinase 5
(ERK5). The ERK5 cascade plays roles in promoting cell
proliferation, differentiation, neuronal survival, and
neuroprotection. MEKK3 plays an essential role in
embryonic angiogenesis and early heart development.
MEKK2 and MEKK3 can also activate the MAPKs, c-Jun
N-terminal kinase (JNK) and p38, through their
respective MAPKKs.
Length = 263
Score = 92.6 bits (230), Expect = 1e-20
Identities = 83/307 (27%), Positives = 124/307 (40%), Gaps = 69/307 (22%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRL----KDKSLPVNDRILREVATLSRLQHQHVVR 444
LG G FG V LC + GR AVK++ + VN + E+ L LQH+ +V+
Sbjct: 10 LGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVN-ALECEIQLLKNLQHERIVQ 68
Query: 445 YYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPR 504
YY G L + L I MEY P
Sbjct: 69 YY-------------------GCLR---------------------DDETLSIFMEYMPG 88
Query: 505 -TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDF 563
+++ ++Y + + RQI+EG+ ++H I+HRD+ NI D+ ++K+GDF
Sbjct: 89 GSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDF 148
Query: 564 GLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGI 623
G +K L+ TG SV GT ++ +PE+ G KAD++S+G
Sbjct: 149 GASKRLQTICSSG-------TGMKSV-----TGTPYWMSPEVISG-EGYGRKADVWSVGC 195
Query: 624 VFFEL------WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
E+ W F AM ++ +LP LRR + R
Sbjct: 196 TVVEMLTEKPPWAEFE-AMAAIFKIATQPTNPQLPSHVSPDARN---FLRRTFVENAKKR 251
Query: 678 PSATELL 684
PSA ELL
Sbjct: 252 PSAEELL 258
>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein
Serine/Threonine Kinase, Yank1. Serine/Threonine
Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Yank1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily
contains uncharacterized STKs with similarity to the
human protein designated Yank1 or STK32A.
Length = 258
Score = 92.0 bits (229), Expect = 2e-20
Identities = 66/304 (21%), Positives = 109/304 (35%), Gaps = 70/304 (23%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVND--RILREVATLSRLQHQ 440
FE L+ +G G FG V + + + + +A+K + K K + +L E L L H
Sbjct: 2 FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMN-KQKCVEKGSVRNVLNERRILQELNHP 60
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
+V ++W +F + +Y+ ++
Sbjct: 61 FLV-----------------NLW-------YSFQDE----------------ENMYLVVD 80
Query: 501 YC-PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
LR F +E +IV L ++H +GIIHRD+ P+NI D + +
Sbjct: 81 LLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVH 140
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMY 619
I DF +A + + L T GT Y APE+ D +
Sbjct: 141 ITDFNIATKVTPDTL----------------TTSTSGTPGYMAPEVLCR-QGYSVAVDWW 183
Query: 620 SLGIVFFELWH---PF---STAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPS 673
SLG+ +E P+ S + QI P +W +E + +L+
Sbjct: 184 SLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETADVLYPATWS---TEAIDAINKLLERD 240
Query: 674 PSDR 677
P R
Sbjct: 241 PQKR 244
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases.
Protein Tyrosine Kinase (PTK) family, catalytic domain.
This PTKc family is part of a larger superfamily that
includes the catalytic domains of protein
serine/threonine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. They can be classified
into receptor and non-receptor tyr kinases. PTKs play
important roles in many cellular processes including,
lymphocyte activation, epithelium growth and
maintenance, metabolism control, organogenesis
regulation, survival, proliferation, differentiation,
migration, adhesion, motility, and morphogenesis.
Receptor tyr kinases (RTKs) are integral membrane
proteins which contain an extracellular ligand-binding
region, a transmembrane segment, and an intracellular
tyr kinase domain. RTKs are usually activated through
ligand binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain, leading to intracellular signaling.
Some RTKs are orphan receptors with no known ligands.
Non-receptor (or cytoplasmic) tyr kinases are
distributed in different intracellular compartments and
are usually multi-domain proteins containing a catalytic
tyr kinase domain as well as various regulatory domains
such as SH3 and SH2. PTKs are usually autoinhibited and
require a mechanism for activation. In many PTKs, the
phosphorylation of tyr residues in the activation loop
is essential for optimal activity. Aberrant expression
of PTKs is associated with many development
abnormalities and cancers.
Length = 262
Score = 90.7 bits (226), Expect = 5e-20
Identities = 73/326 (22%), Positives = 117/326 (35%), Gaps = 96/326 (29%)
Query: 388 PLGHGGFGHVVLCK-NKLDGRHY--AVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVR 444
LG G FG V K DG+ AVK ++ +D S L+E + +L H +VVR
Sbjct: 2 KLGEGAFGEVYKGKLKGKDGKTTEVAVKTLK-EDASEEERKDFLKEARVMKKLGHPNVVR 60
Query: 445 YYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCP- 503
GV + LY+ +EY
Sbjct: 61 LL------GVC---------------------------TEEEP-------LYLVLEYMEG 80
Query: 504 -------RTLRQVFESYDHFDKELAWHLF----RQIVEGLAHIHGQGIIHRDLTPNNIFF 552
R R VF S L+ QI +G+ ++ + +HRDL N
Sbjct: 81 GDLLDYLRKSRPVFPS--PEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLV 138
Query: 553 DARNDIKIGDFGLAKFLKLEQ---LDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE-IEQG 608
+KI DFGL++ + + P + APE ++ G
Sbjct: 139 GEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPI----------------RWMAPESLKDG 182
Query: 609 WPKIDEKADMYSLGIVFFELW----HPFSTAMERQIVLSDLKQKGELP-PSWVAKFSEQE 663
K+D++S G++ +E++ P+ + + VL L++ LP P +
Sbjct: 183 --IFTSKSDVWSFGVLLWEIFTLGATPYPG-LSNEEVLEYLRKGYRLPKPEYCPDE---- 235
Query: 664 SLLRRLM----SPSPSDRPSATELLQ 685
L LM P DRP+ +EL++
Sbjct: 236 --LYELMLSCWQLDPEDRPTFSELVE 259
>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 9.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK9 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK9
together with a cyclin partner (cyclin T1, T2a, T2b, or
K) is the main component of distinct positive
transcription elongation factors (P-TEFb), which
function as Ser2 C-terminal domain kinases of RNA
polymerase II. P-TEFb participates in multiple steps of
gene expression including transcription elongation, mRNA
synthesis, processing, export, and translation. It also
plays a role in mediating cytokine induced transcription
networks such as IL6-induced STAT3 signaling. In
addition, the CDK9/cyclin T2a complex promotes muscle
differentiation and enhances the function of some
myogenic regulatory factors.
Length = 310
Score = 92.1 bits (229), Expect = 6e-20
Identities = 74/352 (21%), Positives = 128/352 (36%), Gaps = 80/352 (22%)
Query: 370 PNMSLPSSRYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKS--LPVNDRI 427
P ++ +E+L +G G FG V ++K + A+KK+ ++++ P+
Sbjct: 1 DQYEFPFCDEVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPIT--A 58
Query: 428 LREVATLSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQE 487
LRE+ L L+H++VV + T A+
Sbjct: 59 LREIKILQLLKHENVVNLIEI----------------CRTKAT---------------PY 87
Query: 488 NKLESTYLYIQMEYCPRTLRQVFES-YDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLT 546
N+ + ++ Y+ E+C L + + F + + ++ GL +IH I+HRD+
Sbjct: 88 NRYKGSF-YLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMK 146
Query: 547 PNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIE 606
NI +K+ DFGLA+ AF T +V T +Y PE+
Sbjct: 147 AANILITKDGILKLADFGLAR-----------AFSLSKNSKPNRYTNRVVTLWYRPPELL 195
Query: 607 QGWPKIDEKADMYSLGIVFFELW--HPFSTAMERQIVLS--------------------D 644
G DM+ G + E+W P Q L+ +
Sbjct: 196 LGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLE 255
Query: 645 LKQKGELPPS---WV-----AKFSEQES--LLRRLMSPSPSDRPSATELLQD 686
L +K ELP V + + L+ +L+ P+ R A L
Sbjct: 256 LFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALNH 307
>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine
Kinases, Mitogen-Activated Protein Kinases 4 and 6.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK4/6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. MAPK4 is also called ERK4 or
p63MAPK, while MAPK6 is also called ERK3 or p97MAPK.
MAPK4 and MAPK6 are atypical MAPKs that are not
regulated by MAP2Ks. MAPK6 is expressed ubiquitously
with highest amounts in brain and skeletal muscle. It
may be involved in the control of cell differentiation
by negatively regulating cell cycle progression in
certain conditions. It may also play a role in
glucose-induced insulin secretion. MAPK6 and MAPK4
cooperate to regulate the activity of MAPK-activated
protein kinase 5 (MK5), leading to its relocation to the
cytoplasm and exclusion from the nucleus. The MAPK6/MK5
and MAPK4/MK5 pathways may play critical roles in
embryonic and post-natal development.
Length = 342
Score = 91.0 bits (226), Expect = 2e-19
Identities = 70/255 (27%), Positives = 108/255 (42%), Gaps = 48/255 (18%)
Query: 376 SSRYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKD-KSLPVNDRILREVATL 434
SRY+ +L+PLG G G V + + AVKKI L D +S+ LRE+ +
Sbjct: 4 GSRYM----DLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSV---KHALREIKII 56
Query: 435 SRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTY 494
RL H ++V+ Y+ L S S + E
Sbjct: 57 RRLDHDNIVKVYEV-------------------LGPS-------GSDLTEDVGSLTELNS 90
Query: 495 LYIQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDA 554
+YI EY L V E +E A Q++ GL +IH ++HRDL P N+F +
Sbjct: 91 VYIVQEYMETDLANVLEQ-GPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINT 149
Query: 555 RNDI-KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKID 613
+ + KIGDFGLA+ +D + G +S + T +Y +P +
Sbjct: 150 EDLVLKIGDFGLARI-----VDPHY---SHKGYLSEG----LVTKWYRSPRLLLSPNNYT 197
Query: 614 EKADMYSLGIVFFEL 628
+ DM++ G +F E+
Sbjct: 198 KAIDMWAAGCIFAEM 212
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 89.9 bits (223), Expect = 2e-19
Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 57/253 (22%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQH-QH 441
+E+L+ +G G +G V ++K G+ A+KK RL+ + LRE++ L L +
Sbjct: 3 YEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIY 62
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
+VR DV E K LY+ EY
Sbjct: 63 IVRLL-----------------------------------DVEHVEEKNGKPSLYLVFEY 87
Query: 502 CPRTLRQVFESY-----DHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD-AR 555
L++ +S + Q+++G+AH H G++HRDL P N+ D +
Sbjct: 88 LDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQK 147
Query: 556 NDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEK 615
+KI D GL + AF T ++ T +Y APE+ G
Sbjct: 148 GLLKIADLGLGR-----------AFSIPVKSY----THEIVTLWYRAPEVLLGSTHYSTP 192
Query: 616 ADMYSLGIVFFEL 628
D++S+G +F E+
Sbjct: 193 VDIWSVGCIFAEM 205
>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 3.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK3 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. In addition, MEKK3 is
involved in interleukin-1 receptor and Toll-like
receptor 4 signaling. It is also a specific regulator of
the proinflammatory cytokines IL-6 and GM-CSF in some
immune cells. MEKK3 also regulates calcineurin, which
plays a critical role in T cell activation, apoptosis,
skeletal myocyte differentiation, and cardiac
hypertrophy.
Length = 266
Score = 88.6 bits (219), Expect = 4e-19
Identities = 81/310 (26%), Positives = 130/310 (41%), Gaps = 72/310 (23%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILR---EVATLSRLQHQHVVRY 445
LG G FG V LC + GR A K+++ +S + + E+ L LQH+ +V+Y
Sbjct: 10 LGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQY 69
Query: 446 YQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPR- 504
Y G L ++ E T L I MEY P
Sbjct: 70 Y-------------------GCL------------------RDRAEKT-LTIFMEYMPGG 91
Query: 505 TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFG 564
+++ ++Y + + RQI+EG++++H I+HRD+ NI D+ ++K+GDFG
Sbjct: 92 SVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFG 151
Query: 565 LAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ---VGTYFYTAPEIEQGWPKIDEKADMYSL 621
+K L+ + + GTG GT ++ +PE+ G KAD++SL
Sbjct: 152 ASKRLQT---------------ICMSGTGIRSVTGTPYWMSPEVISG-EGYGRKADVWSL 195
Query: 622 GIVFFEL------WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPS 675
G E+ W + AM ++ +LP + SE +
Sbjct: 196 GCTVVEMLTEKPPWAEYE-AMAAIFKIATQPTNPQLP----SHISEHARDFLGCIFVEAR 250
Query: 676 DRPSATELLQ 685
RPSA ELL+
Sbjct: 251 HRPSAEELLR 260
>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional.
Length = 294
Score = 89.1 bits (221), Expect = 4e-19
Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 64/255 (25%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQH 439
++ +E+++ +G G +G V ++++ A+KKIRL+ + V +RE++ L +QH
Sbjct: 1 MDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQH 60
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
++VR DV E +L Y+
Sbjct: 61 GNIVRLQ-----------------------------------DVVHSEKRL-----YLVF 80
Query: 500 EYCPRTLRQVFESYDHFDKELAWHLFR----QIVEGLAHIHGQGIIHRDLTPNNIFFDAR 555
EY L++ +S F K L + QI+ G+A+ H ++HRDL P N+ D R
Sbjct: 81 EYLDLDLKKHMDSSPDFAKNP--RLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRR 138
Query: 556 -NDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDG-TGQVGTYFYTAPEIEQGWPKID 613
N +K+ DFGLA+ AF G+ V T +V T +Y APEI G
Sbjct: 139 TNALKLADFGLAR-----------AF-----GIPVRTFTHEVVTLWYRAPEILLGSRHYS 182
Query: 614 EKADMYSLGIVFFEL 628
D++S+G +F E+
Sbjct: 183 TPVDIWSVGCIFAEM 197
>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 1 and 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 1 (CDKL1) and CDKL4 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL1 and CDKL4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL1, also called
p42 KKIALRE, is a glial protein that is upregulated in
gliosis. It is present in neuroblastoma and A431 human
carcinoma cells, and may be implicated in neoplastic
transformation. The function of CDKL4 is unknown.
Length = 286
Score = 88.6 bits (220), Expect = 4e-19
Identities = 82/340 (24%), Positives = 126/340 (37%), Gaps = 92/340 (27%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRI-LREVATLSRLQHQH 441
+E+L +G G +G V C+N+ G+ A+KK ++ + PV +I LRE+ L +L+H +
Sbjct: 3 YEKLSKIGEGSYGVVFKCRNRETGQIVAIKKF-VESEDDPVIKKIALREIRMLKQLKHPN 61
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLE----STYLYI 497
+V N +E L++
Sbjct: 62 LV--------------------------------------------NLIEVFRRKRKLHL 77
Query: 498 QMEYCPRTLRQVFESYDH-FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
EYC T+ E + L + Q ++ + H IHRD+ P NI +
Sbjct: 78 VFEYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQG 137
Query: 557 DIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKA 616
IK+ DFG A+ L TG D T V T +Y APE+ G +
Sbjct: 138 QIKLCDFGFARIL--------------TGP-GDDYTDYVATRWYRAPELLVGDTQYGPPV 182
Query: 617 DMYSLGIVFFE------LWHPFSTAMERQIVLSDLKQK-------GELPPSWVAKFSEQE 663
D++++G VF E LW P SD+ Q G+L P FS
Sbjct: 183 DVWAIGCVFAELLTGQPLW-PGK---------SDVDQLYLIRKTLGDLIPRHQQIFS-TN 231
Query: 664 SLLRRLMSPSPSDRPSATELLQDALPPQMEYELLDNILRM 703
+ L P P R + P + + L L+M
Sbjct: 232 QFFKGLSIPEPETREPLESKFPNISSPALSF--LKGCLQM 269
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 88.6 bits (220), Expect = 5e-19
Identities = 76/326 (23%), Positives = 132/326 (40%), Gaps = 82/326 (25%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
EL LG G G V C+ K G +A+K I D + + +ILRE+ +
Sbjct: 1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTI-TTDPNPDLQKQILRELEINKSCKSP 59
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++V+YY F + ++SS + I ME
Sbjct: 60 YIVKYY------------------------GAFLDESSSS--------------IGIAME 81
Query: 501 YCP-----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDAR 555
YC ++V + +++ + +++GL+++H + IIHRD+ P+NI +
Sbjct: 82 YCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRK 141
Query: 556 NDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWP-KIDE 614
+K+ DFG++ L S+ GT GT FY APE QG P I
Sbjct: 142 GQVKLCDFGVSGEL----------------VNSLAGTF-TGTSFYMAPERIQGKPYSI-- 182
Query: 615 KADMYSLGIVFFELWH---PFSTAMERQIVLSD------------LKQKGELPPSWVAKF 659
+D++SLG+ E+ PF E + + LK + W +F
Sbjct: 183 TSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEF 242
Query: 660 SEQESLLRRLMSPSPSDRPSATELLQ 685
+ +++ + P+ RP+ ++L+
Sbjct: 243 ---KDFIKQCLEKDPTRRPTPWDMLE 265
>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 11. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 11 (Nek11)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek11 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek11 is involved, through direct
phosphorylation, in regulating the degradation of Cdc25A
(Cell Division Cycle 25 homolog A), which plays a role
in cell cycle progression and in activating cyclin
dependent kinases. Nek11 is activated by CHK1
(CHeckpoint Kinase 1) and may be involved in the G2/M
checkpoint. Nek11 may also play a role in the S-phase
checkpoint as well as in DNA replication and genotoxic
stress responses.
Length = 260
Score = 88.1 bits (218), Expect = 5e-19
Identities = 91/321 (28%), Positives = 139/321 (43%), Gaps = 90/321 (28%)
Query: 387 QPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKD-KSLPVND-------RILREVATLSRLQ 438
Q LG G FG V L K+K AV + RLK K +PV + + +E LS+L
Sbjct: 6 QRLGKGSFGTVYLVKDK-----KAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLD 60
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H +V+++ ++ E ++ I
Sbjct: 61 HPAIVKFHASFLE----------------------------------RDA------FCII 80
Query: 499 MEYCP-RTLRQVFESYDHFDKELA------WHLFRQIVEGLAHIHGQGIIHRDLTPNNIF 551
EYC R L E H K L+ W F Q++ G+ ++H + I+HRDL NIF
Sbjct: 81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEW--FIQLLLGVHYMHQRRILHRDLKAKNIF 138
Query: 552 FDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI--EQGW 609
N +KIGDFG+++ L G T GT +Y +PE QG+
Sbjct: 139 L-KNNLLKIGDFGVSRLLM---------------GSCDLATTFTGTPYYMSPEALKHQGY 182
Query: 610 PKIDEKADMYSLGIVFFE---LWHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQ-ESL 665
D K+D++SLG + +E L H F +VL + +G PS +S Q S+
Sbjct: 183 ---DSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIV--EGP-TPSLPETYSRQLNSI 236
Query: 666 LRRLMSPSPSDRPSATELLQD 686
++ +++ PS RPSA E+L++
Sbjct: 237 MQSMLNKDPSLRPSAAEILRN 257
>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Nak1 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nak1 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae
Kic1p (kinase that interacts with Cdc31p) and related
proteins. Nak1 (also known as N-rich kinase 1), is
required by fission yeast for polarizing the tips of
actin cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Kic1p is required by budding yeast for cell integrity
and morphogenesis. Kic1p interacts with Cdc31p, the
yeast homologue of centrin, and phosphorylates
substrates in a Cdc31p-dependent manner.
Length = 277
Score = 87.9 bits (218), Expect = 7e-19
Identities = 82/317 (25%), Positives = 132/317 (41%), Gaps = 79/317 (24%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQH--- 439
++ L+ +G G +G V K+ GR A+K I L V+D I REVA LS+L+
Sbjct: 3 YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSD-IQREVALLSQLRQSQP 61
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
++ +YY ++ L+ L+I M
Sbjct: 62 PNITKYYGSY----------------------------------------LKGPRLWIIM 81
Query: 500 EYCP----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDAR 555
EY RTL + ++ + R+++ L +IH G+IHRD+ NI
Sbjct: 82 EYAEGGSVRTLMKA----GPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNT 137
Query: 556 NDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEK 615
++K+ DFG+A A ++ S VGT ++ APE+ D K
Sbjct: 138 GNVKLCDFGVA-----------ALLNQNSSKRST----FVGTPYWMAPEVITEGKYYDTK 182
Query: 616 ADMYSLGIVFFELWH---PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMS- 671
AD++SLGI +E+ P+S + ++ K K PP + + LLR ++
Sbjct: 183 ADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSK---PPR--LEDNGYSKLLREFVAA 237
Query: 672 ---PSPSDRPSATELLQ 685
P +R SA ELL+
Sbjct: 238 CLDEEPKERLSAEELLK 254
>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional.
Length = 478
Score = 90.8 bits (225), Expect = 8e-19
Identities = 72/234 (30%), Positives = 114/234 (48%), Gaps = 38/234 (16%)
Query: 495 LYIQMEY-----CPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNN 549
L + MEY + ++Q + + F + LF QIV L +H + ++HRDL N
Sbjct: 140 LLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSAN 199
Query: 550 IFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVD-GTGQVGTYFYTAPEIEQG 608
IF IK+GDFG +K + VS+D + GT +Y APE+
Sbjct: 200 IFLMPTGIIKLGDFGFSK--------------QYSDSVSLDVASSFCGTPYYLAPEL--- 242
Query: 609 W--PKIDEKADMYSLGIVFFELW---HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQE 663
W + +KADM+SLG++ +EL PF +R+I+ L K + P V+ S +
Sbjct: 243 WERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYDPFPCPVS--SGMK 300
Query: 664 SLLRRLMSPSPSDRPSATELLQDALPPQMEY--ELLDNILRMMHSSEDTSIYDK 715
+LL L+S +P+ RP+ +LL ++Y L +I+R SE S +D+
Sbjct: 301 ALLDPLLSKNPALRPTTQQLLHTEF---LKYVANLFQDIVR---HSETISPHDR 348
>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 2.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2
(MEKK2) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK2 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK2 also activates ERK1/2, c-Jun N-terminal kinase
(JNK) and p38 through their respective MAPKKs MEK1/2,
JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays
roles in T cell receptor signaling, immune synapse
formation, cytokine gene expression, as well as in EGF
and FGF receptor signaling.
Length = 265
Score = 87.0 bits (215), Expect = 1e-18
Identities = 85/307 (27%), Positives = 134/307 (43%), Gaps = 66/307 (21%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILR---EVATLSRLQHQHVVRY 445
LG G FG V LC + GR AVK+++ +S + + E+ L L H+ +V+Y
Sbjct: 10 LGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQY 69
Query: 446 YQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPR- 504
Y G L + +E T L I ME+ P
Sbjct: 70 Y-------------------GCL------------------RDPMERT-LSIFMEHMPGG 91
Query: 505 TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFG 564
+++ +SY + + RQI+EG++++H I+HRD+ NI D+ ++K+GDFG
Sbjct: 92 SIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFG 151
Query: 565 LAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIV 624
+K L+ L + TG SV GT ++ +PE+ G KAD++S+G
Sbjct: 152 ASKRLQTICL-------SGTGMKSV-----TGTPYWMSPEVISG-EGYGRKADIWSVGCT 198
Query: 625 FFEL------WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRP 678
E+ W F AM ++ LPP V+ L+R+ + RP
Sbjct: 199 VVEMLTEKPPWAEFE-AMAAIFKIATQPTNPVLPPH-VSDHCRD--FLKRIFVEA-KLRP 253
Query: 679 SATELLQ 685
SA ELL+
Sbjct: 254 SADELLR 260
>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 12.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 12 (CDK12) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK12 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK12 is also called Cdc2-related protein
kinase 7 (CRK7) or Cdc2-related kinase
arginine/serine-rich (CrkRS). It is a unique CDK that
contains an arginine/serine-rich (RS) domain, which is
predominantly found in splicing factors. CDK12 is widely
expressed in tissues. It interacts with cyclins L1 and
L2, and plays roles in regulating transcription and
alternative splicing.
Length = 302
Score = 87.1 bits (216), Expect = 2e-18
Identities = 62/256 (24%), Positives = 113/256 (44%), Gaps = 49/256 (19%)
Query: 377 SRYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDK--SLPVNDRILREVATL 434
R ++ F+ + +G G +G V ++K G A+KK+RL ++ P+ +RE+ L
Sbjct: 3 KRCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPIT--AIREIKIL 60
Query: 435 SRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTY 494
+L H+++V + V D D++ + K +
Sbjct: 61 RQLNHRNIVNLKEI-----VTD-KQDAL------------------------DFKKDKGA 90
Query: 495 LYIQMEYCPRTLRQVFES-YDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD 553
Y+ EY L + ES HF ++ +Q++EGL + H + +HRD+ +NI +
Sbjct: 91 FYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLN 150
Query: 554 ARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKID 613
+ IK+ DFGLA+ + + + P T +V T +Y PE+ G +
Sbjct: 151 NKGQIKLADFGLARL-----YNSEESRPY---------TNKVITLWYRPPELLLGEERYG 196
Query: 614 EKADMYSLGIVFFELW 629
D++S G + EL+
Sbjct: 197 PAIDVWSCGCILGELF 212
>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase,
p38 Mitogen-Activated Protein Kinase. Serine/Threonine
Kinases (STKs), p38 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The p38 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. p38 kinases are
mitogen-activated protein kinases (MAPKs), serving as
important mediators of cellular responses to
extracellular signals. They function in the regulation
of the cell cycle, cell development, cell
differentiation, senescence, tumorigenesis, apoptosis,
pain development and pain progression, and immune
responses. p38 kinases are activated by the MAPK kinases
MKK3 and MKK6, which in turn are activated by upstream
MAPK kinase kinases including TAK1, ASK1, and MLK3, in
response to cellular stresses or inflammatory cytokines.
p38 substrates include other protein kinases and factors
that regulate transcription, nuclear export, mRNA
stability and translation. p38 kinases are drug targets
for the inflammatory diseases psoriasis, rheumatoid
arthritis, and chronic pulmonary disease. Vertebrates
contain four isoforms of p38, named alpha, beta, gamma,
and delta, which show varying substrate specificity and
expression patterns. p38alpha and p38beta are
ubiquitously expressed, p38gamma is predominantly found
in skeletal muscle, and p38delta is found in the heart,
lung, testis, pancreas, and small intestine.
Length = 343
Score = 86.2 bits (214), Expect = 7e-18
Identities = 64/247 (25%), Positives = 100/247 (40%), Gaps = 55/247 (22%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
++ L P+G G +G V + GR A+KK+ +S R RE+ L + H++V
Sbjct: 17 YQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENV 76
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADV-TGQENKLESTYLYIQMEY 501
+ DV T + + +Y+
Sbjct: 77 I-----------------------------------GLLDVFTPASSLEDFQDVYLVTHL 101
Query: 502 CPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
L + + D + + L QI+ GL +IH GIIHRDL P+NI + ++KI
Sbjct: 102 MGADLNNIVKCQKLSDDHIQF-LVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKIL 160
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSL 621
DFGLA+ D + TG V T +Y APEI W ++ D++S+
Sbjct: 161 DFGLAR-----HTDDEM-------------TGYVATRWYRAPEIMLNWMHYNQTVDIWSV 202
Query: 622 GIVFFEL 628
G + EL
Sbjct: 203 GCIMAEL 209
>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinases, Janus kinases. Protein Tyrosine
Kinase (PTK) family; Janus kinase (Jak) subfamily;
catalytic (c) domain (repeat 2). The Jak subfamily is
composed of Jak1, Jak2, Jak3, TYK2, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal tyr kinase
catalytic domain. Most Jaks are expressed in a wide
variety of tissues, except for Jak3, which is expressed
only in hematopoietic cells. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jaks are also involved in regulating the surface
expression of some cytokine receptors. The Jak-STAT
pathway is involved in many biological processes
including hematopoiesis, immunoregulation, host defense,
fertility, lactation, growth, and embryogenesis.
Length = 284
Score = 84.4 bits (209), Expect = 1e-17
Identities = 80/324 (24%), Positives = 122/324 (37%), Gaps = 82/324 (25%)
Query: 386 LQPLGHGGFGHVVLCK----NKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
++ LG G FG V LC+ G AVK + + +D RE+ L L H++
Sbjct: 9 IKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSD-FEREIEILRTLDHEN 67
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
+V+Y GV + G L + MEY
Sbjct: 68 IVKY------KGVCEKPGGRS--------------------------------LRLIMEY 89
Query: 502 CPR-TLRQVFESYDHFDKELAWHLFR---QIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
P +LR + H D+ L QI +G+ ++ Q IHRDL NI ++ +
Sbjct: 90 LPSGSLRDYLQR--HRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDL 147
Query: 558 IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE-IEQGWPKIDEKA 616
+KI DFGLAK L P D V G+ ++Y APE + K +
Sbjct: 148 VKISDFGLAKVL-----------PEDKDYYYVKEPGESPIFWY-APECLRTS--KFSSAS 193
Query: 617 DMYSLGIVFFELW-------HPFSTAMERQIVLSD----------LKQKGELPPSWVAKF 659
D++S G+ +EL+ P + + + LK+ LP +
Sbjct: 194 DVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRP-PSCP 252
Query: 660 SEQESLLRRLMSPSPSDRPSATEL 683
E L++ P DRPS +L
Sbjct: 253 DEVYDLMKLCWEAEPQDRPSFADL 276
>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related
(NDR) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The NDR subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. NDR kinases
regulate mitosis, cell growth, embryonic development,
and neurological processes. They are also required for
proper centrosome duplication. Higher eukaryotes contain
two NDR isoforms, NDR1 and NDR2. This subfamily also
contains fungal NDR-like kinases.
Length = 364
Score = 84.7 bits (210), Expect = 3e-17
Identities = 93/390 (23%), Positives = 150/390 (38%), Gaps = 97/390 (24%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKD---KSLPVNDRILREVATLSRL 437
+DFE ++ +G G FG V L + K G YA+KK+R + K + R R++ L+
Sbjct: 1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDI--LAEA 58
Query: 438 QHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYI 497
+ VV+ Y ++ Q+ YLY+
Sbjct: 59 DNPWVVKLYYSF------------------------------------QDEN----YLYL 78
Query: 498 QMEYCP----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD 553
MEY P TL D F +E + + + IH G IHRD+ P+N+ D
Sbjct: 79 IMEYLPGGDMMTL---LMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLD 135
Query: 554 ARNDIKIGDFGLAKFL-KLEQLDQDAAFPTDTGGVSVDGTGQ------------------ 594
A+ IK+ DFGL L K + + +D +
Sbjct: 136 AKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRAL 195
Query: 595 ----VGTYFYTAPEI--EQGWPKIDEKADMYSLGIVFFEL---WHPFSTAMERQIVLSDL 645
VGT Y APE+ + G+ K + D +SLG++ +E+ + PF + ++ +
Sbjct: 196 AYSTVGTPDYIAPEVFLQTGYNK---ECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKII 252
Query: 646 KQKGELP-PSWVAKFSEQESLLRRLMSPSPSDR---PSATELLQDALPPQMEYELLDN-- 699
K L P V E + L++RL R E+ +++E +
Sbjct: 253 NWKETLQFPDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSHPFFKGVDWEHIRERP 311
Query: 700 --ILRMMHSSEDTSIYDKVVSSIFDEETLD 727
I+ + S DTS +D F+E LD
Sbjct: 312 APIIPELKSITDTSNFDD-----FEEIDLD 336
>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 4. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 4 (MST4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST4 is sometimes
referred to as MASK (MST3 and SOK1-related kinase). It
plays a role in mitogen-activated protein kinase (MAPK)
signaling during cytoskeletal rearrangement,
morphogenesis, and apoptosis. It influences cell growth
and transformation by modulating the extracellular
signal-regulated kinase (ERK) pathway. MST4 may also
play a role in tumor formation and progression. It
localizes in the Golgi apparatus by interacting with the
Golgi matrix protein GM130 and may play a role in cell
migration.
Length = 277
Score = 83.2 bits (205), Expect = 3e-17
Identities = 79/306 (25%), Positives = 132/306 (43%), Gaps = 62/306 (20%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
F +L+ +G G FG V + + A+K I L++ + D I +E+ LS+ +V
Sbjct: 6 FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIED-IQQEITVLSQCDSPYV 64
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
+YY ++ L+ T L+I MEY
Sbjct: 65 TKYYGSY----------------------------------------LKGTKLWIIMEYL 84
Query: 503 PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
FD+ + ++I++GL ++H + IHRD+ N+ + D+K+ D
Sbjct: 85 GGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLAD 144
Query: 563 FGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLG 622
FG+A L Q+ ++ VGT F+ APE+ Q D KAD++SLG
Sbjct: 145 FGVAGQLTDTQIKRNTF---------------VGTPFWMAPEVIQQ-SAYDSKADIWSLG 188
Query: 623 IVFFEL--WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQ-ESLLRRLMSPSPSDRPS 679
I EL P ++ M VL + + PP+ +FS+ + + ++ PS RP+
Sbjct: 189 ITAIELAKGEPPNSDMHPMRVLFLIPKNN--PPTLTGEFSKPFKEFIDACLNKDPSFRPT 246
Query: 680 ATELLQ 685
A ELL+
Sbjct: 247 AKELLK 252
>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed.
Length = 932
Score = 86.7 bits (215), Expect = 4e-17
Identities = 87/325 (26%), Positives = 139/325 (42%), Gaps = 62/325 (19%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIR--LKDKSLPVNDRILREVATLSRLQHQHVVRYY 446
+G GG G V L + + R A+KKIR L + L + R LRE + L H +V Y
Sbjct: 10 IGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPL-LKKRFLREAKIAADLIHPGIVPVY 68
Query: 447 QAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPRTL 506
+ DGD ++ T YI+ L
Sbjct: 69 S------ICS-DGDPVY----------------------------YTMPYIEGYTLKSLL 93
Query: 507 RQVFESYDHFDKELA--------WHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
+ V++ + KELA +F +I + ++H +G++HRDL P+NI ++
Sbjct: 94 KSVWQK-ESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEV 152
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGT--GQ-VGTYFYTAPEIEQGWPKIDEK 615
I D+G A F KLE+ D + T G+ VGT Y APE G P E
Sbjct: 153 VILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPA-SES 211
Query: 616 ADMYSLGIVFFE---LWHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRL--- 669
D+Y+LG++ ++ L P+ R+I D+ L P VA + E L ++
Sbjct: 212 TDIYALGVILYQMLTLSFPYRRKKGRKISYRDVI----LSPIEVAPYREIPPFLSQIAMK 267
Query: 670 -MSPSPSDRPSATELLQDALPPQME 693
++ P++R S+ + L+ L P ++
Sbjct: 268 ALAVDPAERYSSVQELKQDLEPHLQ 292
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
Kinase, Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. ERK5, also called Big MAPK1
(BMK1) or MAPK7, has a unique C-terminal extension,
making it approximately twice as big as other MAPKs.
This extension contains transcriptional activation
capability which is inhibited by the N-terminal half.
ERK5 is activated in response to growth factors and
stress by a cascade that leads to its phosphorylation by
the MAP2K MEK5, which in turn is regulated by the MAP3Ks
MEKK2 and MEKK3. Activated ERK5 phosphorylates its
targets including myocyte enhancer factor 2 (MEF2),
Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
cell proliferation during the G1/S phase transition.
Studies on knockout mice revealed that ERK5 is essential
for cardiovascular development and plays an important
role in angiogenesis. It is also critical for neural
differentiation and survival. The ERK5 pathway has been
implicated in the pathogenesis of many diseases
including cancer, cardiac hypertrophy, and
atherosclerosis.
Length = 334
Score = 83.5 bits (207), Expect = 4e-17
Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 47/246 (19%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
++ ++ +G G +G V + G+ A+KKI + R LRE+ L +H ++
Sbjct: 7 YKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNI 66
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
+ ADF DV Y+ M+
Sbjct: 67 IAIRDI-LRPPGADFK-----------------------DV------------YVVMDLM 90
Query: 503 PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
L + S +E + Q++ GL +IH +IHRDL P+N+ + +++IGD
Sbjct: 91 ESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGD 150
Query: 563 FGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLG 622
FG+A+ L ++ PT+ T V T +Y APE+ P+ DM+S+G
Sbjct: 151 FGMARGL--------SSSPTEHKYFM---TEYVATRWYRAPELLLSLPEYTTAIDMWSVG 199
Query: 623 IVFFEL 628
+F E+
Sbjct: 200 CIFAEM 205
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of the subfamily include SLK, STK10
(also called LOK for lymphocyte-oriented kinase), SmSLK
(Schistosoma mansoni SLK), and related proteins. SLK
promotes apoptosis through apoptosis signal-regulating
kinase 1 (ASK1) and the mitogen-activated protein kinase
(MAPK) p38. It also plays a role in mediating actin
reorganization. STK10 is responsible in regulating the
CD28 responsive element in T cells, as well as leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. SmSLK is capable of activating the MAPK Jun
N-terminal kinase (JNK) pathway in human embryonic
kidney (HEK) cells as well as in Xenopus oocytes. It may
participate in regulating MAPK cascades during
host-parasite interactions.
Length = 280
Score = 82.5 bits (204), Expect = 5e-17
Identities = 81/316 (25%), Positives = 131/316 (41%), Gaps = 82/316 (25%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYYQA 448
LG G FG V ++K G A K I+++ + + D ++ E+ LS +H ++V Y+A
Sbjct: 13 LGDGAFGKVYKAQHKETGLFAAAKIIQIESEE-ELEDFMV-EIDILSECKHPNIVGLYEA 70
Query: 449 WFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPR-TLR 507
+F ++ L+I +E+C L
Sbjct: 71 YF------YENK----------------------------------LWILIEFCDGGALD 90
Query: 508 QVFESYDH-FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLA 566
+ + + ++ RQ++E L +H +IHRDL NI D+K+ DFG++
Sbjct: 91 SIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVS 150
Query: 567 KFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI-------EQGWPKIDEKADMY 619
K +D F +GT ++ APE+ + + D KAD++
Sbjct: 151 AKNKSTLQKRD-TF--------------IGTPYWMAPEVVACETFKDNPY---DYKADIW 192
Query: 620 SLGIVFFELWH--PFSTAMERQIVLSDLK-QKGELP----PS-WVAKFSEQESLLRRLMS 671
SLGI EL P + VL LK K E P PS W + F++ L+ +
Sbjct: 193 SLGITLIELAQMEPPHHELNPMRVL--LKILKSEPPTLDQPSKWSSSFND---FLKSCLV 247
Query: 672 PSPSDRPSATELLQDA 687
P DRP+A ELL+
Sbjct: 248 KDPDDRPTAAELLKHP 263
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 7. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 82.4 bits (203), Expect = 5e-17
Identities = 73/309 (23%), Positives = 124/309 (40%), Gaps = 60/309 (19%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKD-KSLPVNDRILREVATLSRLQ 438
L +F + +G G F V LDG A+KK+++ D ++E+ L +L
Sbjct: 1 LANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLN 60
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H +V++YY ++ E +N+L
Sbjct: 61 HPNVIKYYASFIE-----------------------------------DNELNIVLELAD 85
Query: 499 MEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
R ++ + ++ W F Q+ L H+H + ++HRD+ P N+F A +
Sbjct: 86 AGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVV 145
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI--EQGWPKIDEKA 616
K+GD GL +F F + T VGT +Y +PE E G+ + K+
Sbjct: 146 KLGDLGLGRF-----------FSSKTTAAH----SLVGTPYYMSPERIHENGY---NFKS 187
Query: 617 DMYSLGIVFFE---LWHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQ-ESLLRRLMSP 672
D++SLG + +E L PF L ++ + PP +SE+ L+ ++P
Sbjct: 188 DIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINP 247
Query: 673 SPSDRPSAT 681
P RP T
Sbjct: 248 DPEKRPDIT 256
>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 10.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein Kinase 10 (CDK10) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK10 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK10, also called PISSLRE, is essential for
cell growth and proliferation, and acts through the G2/M
phase of the cell cycle. CDK10 has also been identified
as an important factor in endocrine therapy resistance
in breast cancer. CDK10 silencing increases the
transcription of c-RAF and the activation of the p42/p44
MAPK pathway, which leads to antiestrogen resistance.
Patients who express low levels of CDK10 relapse early
on tamoxifen.
Length = 309
Score = 83.2 bits (206), Expect = 5e-17
Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 60/258 (23%)
Query: 375 PSSRYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRL---KDKSLPVNDRILREV 431
R + +FE+L +G G +G V ++ G A+KK+R+ +D +P++ LRE+
Sbjct: 1 GRCRSVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERD-GIPISS--LREI 57
Query: 432 ATLSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLE 491
L L+H ++V + V G L+
Sbjct: 58 TLLLNLRHPNIVELKEV----------------------------------VVG--KHLD 81
Query: 492 STYLYIQMEYCPRTLRQVFESYDH-FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNI 550
S +L MEYC + L + ++ F + L Q++ GL ++H IIHRDL +N+
Sbjct: 82 SIFLV--MEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNL 139
Query: 551 FFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWP 610
+ +KI DFGLA+ G + T +V T +Y APE+ G
Sbjct: 140 LLTDKGCLKIADFGLAR---------------TYGLPAKPMTPKVVTLWYRAPELLLGCT 184
Query: 611 KIDEKADMYSLGIVFFEL 628
DM+++G + EL
Sbjct: 185 TYTTAIDMWAVGCILAEL 202
>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Pho85.
Serine/Threonine Kinases (STKs), Pho85 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Pho85 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Pho85 is a
multifunctional Cyclin-Dependent protein Kinase (CDK) in
yeast. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. Pho85 is regulated
by 10 different cyclins (Pcls) and plays a role in G1
progression, cell polarity, phosphate and glycogen
metabolism, gene expression, and in signaling changes in
the environment. It is not essential for yeast viability
and is the functional homolog of mammalian CDK5, which
plays a role in central nervous system development.
Length = 284
Score = 82.1 bits (203), Expect = 7e-17
Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 61/250 (24%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
F++L+ LG G + V +N+ G A+K+I L D +RE++ + L+H+++
Sbjct: 2 FKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHL-DAEEGTPSTAIREISLMKELKHENI 60
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
VR + DV ENKL + EY
Sbjct: 61 VRLH-----------------------------------DVIHTENKLMLVF-----EYM 80
Query: 503 PRTLRQVFESYDH---FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
+ L++ +++ D Q+++G+A H ++HRDL P N+ + R ++K
Sbjct: 81 DKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELK 140
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDG-TGQVGTYFYTAPEIEQGWPKIDEKADM 618
+ DFGLA+ AF G+ V+ + +V T +Y AP++ G D+
Sbjct: 141 LADFGLAR-----------AF-----GIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDI 184
Query: 619 YSLGIVFFEL 628
+S+G + E+
Sbjct: 185 WSVGCIMAEM 194
>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear
Dbf2-Related kinase-like Protein Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), NDR kinase
subfamily, fungal NDR-like proteins, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The NDR subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This group is
composed of fungal NDR-like proteins including
Saccharomyces cerevisiae CBK1 (or CBK1p),
Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago
maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like
NDR kinase, group members contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. CBK1 is an essential component in the RAM
(regulation of Ace2p activity and cellular
morphogenesis) network. CBK1 and Orb6 play similar roles
in coordinating cell morphology with cell cycle
progression. Ukc1 is involved in morphogenesis,
pathogenicity, and pigment formation. Cot1 plays a role
in polar tip extension.
Length = 377
Score = 83.0 bits (205), Expect = 1e-16
Identities = 90/351 (25%), Positives = 139/351 (39%), Gaps = 89/351 (25%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
DF ++ +G G FG V L + K G+ YA+K + KS E+ +L H
Sbjct: 1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLL---KS---------EMFKKDQLAHV 48
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
R A + DS W + S +S + ++ YLY+ ME
Sbjct: 49 KAERDVLA---------ESDSPW----VVSLYYSFQ--------------DAQYLYLIME 81
Query: 501 YCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
+ P L + YD F +++ + V + +H G IHRD+ P+NI D IK
Sbjct: 82 FLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIK 141
Query: 560 IGDFGLAK-FLKLEQ-------LDQDAAFPTDTG--GVSVDGT----------------- 592
+ DFGL+ F K L + V+VD
Sbjct: 142 LSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNR 201
Query: 593 -----GQVGTYFYTAPEI--EQGWPKIDEKADMYSLGIVFFEL---WHPF--STAME--R 638
VGT Y APEI +QG+ ++ D +SLG + FE W PF + E R
Sbjct: 202 RLMAYSTVGTPDYIAPEIFLQQGY---GQECDWWSLGAIMFECLIGWPPFCSENSHETYR 258
Query: 639 QIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPS--DRPSATELLQDA 687
+I+ + ++ P + E E L+RRL++ + + R A E+
Sbjct: 259 KII--NWRETLYFPDD-IHLSVEAEDLIRRLITNAENRLGRGGAHEIKSHP 306
>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), cAMP-dependent protein kinase (PKA) subfamily,
PRKX-like kinases, catalytic (c) subunit. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include human PRKX (X
chromosome-encoded protein kinase), Drosophila DC2, and
similar proteins. PRKX is present in many tissues
including fetal and adult brain, kidney, and lung. The
PRKX gene is located in the Xp22.3 subregion and has a
homolog called PRKY on the Y chromosome. An abnormal
interchange between PRKX aand PRKY leads to the sex
reversal disorder of XX males and XY females. PRKX is
implicated in granulocyte/macrophage lineage
differentiation, renal cell epithelial migration, and
tubular morphogenesis in the developing kidney.
Length = 291
Score = 81.3 bits (201), Expect = 1e-16
Identities = 61/251 (24%), Positives = 96/251 (38%), Gaps = 65/251 (25%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDK-SLPVNDRILREVATLSRLQHQ 440
D E ++ +G G FG V L ++++ +YA+K + + + L + E L + H
Sbjct: 2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHP 61
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++R + + +LY+ ME
Sbjct: 62 FIIRLFWTEHD----------------------------------------QRFLYMLME 81
Query: 501 YCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
Y P L + F +IV L ++H + I++RDL P NI D IK
Sbjct: 82 YVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIK 141
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQV-GTYFYTAPEIEQGWPKIDEKA-D 617
+ DFG AK L D T + GT Y APE+ Q K KA D
Sbjct: 142 LTDFGFAKKL-------------------RDRTWTLCGTPEYLAPEVIQS--KGHNKAVD 180
Query: 618 MYSLGIVFFEL 628
++LGI+ +E+
Sbjct: 181 WWALGILIYEM 191
>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like
Protein Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, fungal Rim15-like kinases,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include Saccharomyces
cerevisiae Rim15, Schizosaccharomyces pombe cek1, and
similar fungal proteins. They contain a central
catalytic domain, which contains an insert relative to
MAST kinases. In addition, Rim15 contains a C-terminal
signal receiver (REC) domain while cek1 contains an
N-terminal PAS domain. Rim15 (or Rim15p) functions as a
regulator of meiosis. It acts as a downstream effector
of PKA and regulates entry into stationary phase (G0).
Thus, it plays a crucial role in regulating yeast
proliferation, differentiation, and aging. Cek1 may
facilitate progression of mitotic anaphase.
Length = 260
Score = 80.6 bits (199), Expect = 2e-16
Identities = 71/303 (23%), Positives = 117/303 (38%), Gaps = 75/303 (24%)
Query: 386 LQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKD---KSLPVNDRILREVATLSRLQHQHV 442
L+P+ G FG V L K + G ++A+K ++ D K+ N + R + + + +V
Sbjct: 1 LKPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQG-ESPYV 59
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
+ Y +F ++ YLY+ MEY
Sbjct: 60 AKLY------------------------YSFQSK----------------DYLYLVMEYL 79
Query: 503 P----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
+L + ++ A ++V G+ +H +GIIHRD+ P N+ D +
Sbjct: 80 NGGDCASLIKTL---GGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHL 136
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADM 618
K+ DFGL++ G + VGT Y APE G D+ +D
Sbjct: 137 KLTDFGLSR----------------NGLENKK---FVGTPDYLAPETILGVGD-DKMSDW 176
Query: 619 YSLGIVFFEL---WHPFSTAMERQIVLSDLKQKGELPPSWVAKFS-EQESLLRRLMSPSP 674
+SLG V FE + PF + + L ++ P S E L+ RL+ P
Sbjct: 177 WSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDP 236
Query: 675 SDR 677
+ R
Sbjct: 237 AKR 239
>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; catalytic (c) domain (repeat 2). The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal catalytic tyr kinase domain. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger
downstream signaling events such as the phosphorylation
of signal transducers and activators of transcription
(STATs). Jak2 is widely expressed in many tissues while
Jak3 is expressed only in hematopoietic cells. Jak2 is
essential for the signaling of hormone-like cytokines
such as growth hormone, erythropoietin, thrombopoietin,
and prolactin, as well as some IFNs and cytokines that
signal through the IL-3 and gp130 receptors. Jak3 binds
the shared receptor subunit common gamma chain and thus,
is essential in the signaling of cytokines that use it
such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21.
Disruption of Jak2 in mice results in an embryonic
lethal phenotype with multiple defects including
erythropoietic and cardiac abnormalities. It is the only
Jak gene that results in a lethal phenotype when
disrupted in mice. A mutation in the pseudokinase domain
of Jak2, V617F, is present in many myeloproliferative
diseases, including almost all patients with
polycythemia vera, and 50% of patients with essential
thrombocytosis and myelofibrosis. Jak3 is important in
lymphoid development and myeloid cell differentiation.
Inactivating mutations in Jak3 have been reported in
humans with severe combined immunodeficiency (SCID).
Length = 284
Score = 81.0 bits (200), Expect = 2e-16
Identities = 90/332 (27%), Positives = 132/332 (39%), Gaps = 87/332 (26%)
Query: 383 FEE-----LQPLGHGGFGHVVLCK----NKLDGRHYAVKKIRLKDKSLPVNDRILREVAT 433
FEE +Q LG G FG V LC+ G AVKK++ + + D RE+
Sbjct: 1 FEERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQ-HSTAEHLRD-FEREIEI 58
Query: 434 LSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLEST 493
L LQH ++V+Y GV + +G
Sbjct: 59 LKSLQHDNIVKY------KGVC-------YSAGRRN------------------------ 81
Query: 494 YLYIQMEYCPR-TLRQVFESYDH-FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIF 551
L + MEY P +LR + + D QI +G+ ++ + +HRDL NI
Sbjct: 82 -LRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNIL 140
Query: 552 FDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPK 611
++ N +KIGDFGL K L P D V G+ ++Y APE K
Sbjct: 141 VESENRVKIGDFGLTKVL-----------PQDKEYYKVREPGESPIFWY-APE-SLTESK 187
Query: 612 IDEKADMYSLGIVFFELW-------HPFSTAMER--------QIV---LSDLKQKGEL-- 651
+D++S G+V +EL+ P + M IV + LK G L
Sbjct: 188 FSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPA 247
Query: 652 PPSWVAKFSEQESLLRRLMSPSPSDRPSATEL 683
PP A E ++++ + PS RPS +EL
Sbjct: 248 PPGCPA---EIYAIMKECWNNDPSQRPSFSEL 276
>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TDY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TDY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TDY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. Oryza sativa contains
at least 17 MAPKs. There are two subtypes of plant MAPKs
based on the conserved phosphorylation motif present in
the activation loop, TEY and TDY. Arabidopsis thaliana
contains more TEY-type MAPKs than TDY-type, whereas the
reverse is true for Oryza sativa. This subfamily
represents the TDY subtype and is composed of Group D
plant MAPKs including Arabidopsis thaliana MPK18
(AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1
(OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1),
Zea mays MPK6, and the Medicago sativa TDY1 gene
product. OsBWMK1 enhances resistance to pathogenic
infections. It mediates stress-activated defense
responses by activating a transcription factor that
affects the expression of stress-related genes. AtMPK18
is involved in microtubule-related functions.
Length = 338
Score = 81.8 bits (202), Expect = 2e-16
Identities = 84/338 (24%), Positives = 127/338 (37%), Gaps = 83/338 (24%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
++ + +G G +G V + G A+KKI + + RILRE+ L L+H +
Sbjct: 2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDI 61
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
V +F +Y+ E
Sbjct: 62 VEIKHIMLPPSRREFKD-----------------------------------IYVVFELM 86
Query: 503 PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
L QV ++ D E Q++ L +IH + HRDL P NI +A +KI D
Sbjct: 87 ESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICD 146
Query: 563 FGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI-EQGWPKIDEKADMYSL 621
FGLA+ AF DT ++ T V T +Y APE+ + K D++S+
Sbjct: 147 FGLAR----------VAF-NDTPT-AIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSI 194
Query: 622 GIVFFE-----------------------LWHPFSTAMER------QIVLSDLKQKGELP 652
G +F E L P + R + LS +++K +P
Sbjct: 195 GCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVP 254
Query: 653 PSWVAKFSEQES----LLRRLMSPSPSDRPSATELLQD 686
S KF + LL RL++ P DRP+A E L D
Sbjct: 255 FS--QKFPNADPLALRLLERLLAFDPKDRPTAEEALAD 290
>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase,
Nemo-Like Kinase. Serine/Threonine Kinases (STKs),
Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The NLK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mitogen-activated protein
kinases (MAPKs) are important mediators of cellular
responses to extracellular signals. NLK is an atypical
MAPK that is not regulated by a MAPK kinase. It
functions downstream of the MAPK kinase kinase Tak1,
which also plays a role in activating the JNK and p38
MAPKs. The Tak1/NLK pathways are regulated by Wnts, a
family of secreted proteins that is critical in the
control of asymmetric division and cell polarity. NLK
can phosphorylate transcription factors from the TCF/LEF
family, inhibiting their ability to activate the
transcription of target genes. In prostate cancer cells,
NLK is involved in regulating androgen receptor-mediated
transcription and its expression is altered during
cancer progression.
Length = 372
Score = 82.1 bits (203), Expect = 2e-16
Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 53/249 (21%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
D E +P+G+G FG V + DG+ A+KK+ ++L R+ RE+ L +H +
Sbjct: 1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDN 60
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADV--TGQENKLESTYLYIQM 499
V+ S+ D+ + E Y+ ++
Sbjct: 61 VL-----------------------------------SALDILQPPHIDPFEEIYVVTEL 85
Query: 500 EYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
L ++ S + QI+ GL ++H GI+HRD+ P N+ ++ +K
Sbjct: 86 MQS--DLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLK 143
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMY 619
I DFGLA ++E+ D+ S T +V T +Y APEI G D++
Sbjct: 144 ICDFGLA---RVEEPDE-----------SKHMTQEVVTQYYRAPEILMGSRHYTSAVDIW 189
Query: 620 SLGIVFFEL 628
S+G +F EL
Sbjct: 190 SVGCIFAEL 198
>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional.
Length = 335
Score = 81.3 bits (201), Expect = 2e-16
Identities = 59/252 (23%), Positives = 103/252 (40%), Gaps = 53/252 (21%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDR------------ILREVATLSR 436
LG G +G V + L G+ A+KK+++ + S V LRE+ ++
Sbjct: 17 LGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNE 76
Query: 437 LQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLY 496
++H++++ DV + + ++
Sbjct: 77 IKHENIM-----------------------------------GLVDVYVEGD-----FIN 96
Query: 497 IQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
+ M+ L++V + + + QI+ GL +H +HRDL+P NIF +++
Sbjct: 97 LVMDIMASDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKG 156
Query: 557 DIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKA 616
KI DFGLA+ D +T + T +V T +Y APE+ G K
Sbjct: 157 ICKIADFGLARRYGYPPY-SDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAV 215
Query: 617 DMYSLGIVFFEL 628
DM+S+G +F EL
Sbjct: 216 DMWSVGCIFAEL 227
>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular
signal-Regulated Kinase 1 and 2-like Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), Extracellular
signal-regulated kinases 1 and 2 (ERK1/2) and Fus3
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. This
ERK1/2-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
the mitogen-activated protein kinases (MAPKs) ERK1,
ERK2, baker's yeast Fus3, and similar proteins. MAPK
pathways are important mediators of cellular responses
to extracellular signals. ERK1/2 activation is
preferentially by mitogenic factors, differentiation
stimuli, and cytokines, through a kinase cascade
involving the MAPK kinases MEK1/2 and a MAPK kinase
kinase from the Raf family. ERK1/2 have numerous
substrates, many of which are nuclear and participate in
transcriptional regulation of many cellular processes.
They regulate cell growth, cell proliferation, and cell
cycle progression from G1 to S phase. Although the
distinct roles of ERK1 and ERK2 have not been fully
determined, it is known that ERK2 can maintain most
functions in the absence of ERK1, and that the deletion
of ERK2 is embryonically lethal. The MAPK, Fus3,
regulates yeast mating processes including
mating-specific gene expression, G1 arrest, mating
projection, and cell fusion.
Length = 336
Score = 80.8 bits (200), Expect = 4e-16
Identities = 62/258 (24%), Positives = 99/258 (38%), Gaps = 71/258 (27%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
++ L +G G +G V +K G A+KKI + R LRE+ L R +H++
Sbjct: 6 RYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQT-FCQRTLREIKILRRFKHEN 64
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
++ D+ + +YI E
Sbjct: 65 IIGIL-----------------------------------DIIRPPSFESFNDVYIVQEL 89
Query: 502 CP----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
+ ++ S DH + QI+ GL +IH ++HRDL P+N+ + D
Sbjct: 90 METDLYKLIKTQHLSNDH-----IQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCD 144
Query: 558 IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ----VGTYFYTAPEI---EQGWP 610
+KI DFGLA+ E D TG V T +Y APEI +G+
Sbjct: 145 LKICDFGLARIADPEH----------------DHTGFLTEYVATRWYRAPEIMLNSKGYT 188
Query: 611 KIDEKADMYSLGIVFFEL 628
K D++S+G + E+
Sbjct: 189 K---AIDIWSVGCILAEM 203
>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine
Kinase, Cell Division Cycle 2-like 1. Serine/Threonine
Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDC2L1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDC2L1, also
called PITSLRE, exists in different isoforms which are
named using the alias CDK11(p). The CDC2L1 gene produces
two protein products, CDK11(p110) and CDK11(p58). CDC2L1
is also represented by the caspase-processed CDK11(p46).
CDK11(p110), the major isoform, associates with cyclin L
and is expressed throughout the cell cycle. It is
involved in RNA processing and the regulation of
transcription. CDK11(p58) associates with cyclin D3 and
is expressed during the G2/M phase of the cell cycle. It
plays roles in spindle morphogenesis, centrosome
maturation, sister chromatid cohesion, and the
completion of mitosis. CDK11(p46) is formed from the
larger isoforms by caspases during TNFalpha- and
Fas-induced apoptosis. It functions as a downstream
effector kinase in apoptotic signaling pathways and
interacts with eukaryotic initiation factor 3f (eIF3f),
p21-activated kinase (PAK1), and Ran-binding protein
(RanBPM).
Length = 293
Score = 80.0 bits (198), Expect = 4e-16
Identities = 67/255 (26%), Positives = 113/255 (44%), Gaps = 60/255 (23%)
Query: 378 RYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRL--KDKSLPVNDRILREVATLS 435
R ++++E+L + G +G V ++K G A+KK+++ + + P+ LRE+ L
Sbjct: 2 RSVDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITS--LREINILL 59
Query: 436 RLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYL 495
+LQH ++V E V G ++ +K+
Sbjct: 60 KLQHPNIVTVK----EVVV----GSNL-------------------------DKI----- 81
Query: 496 YIQMEYCPRTLRQVFESYDH-FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDA 554
Y+ MEY L+ + E+ F + L Q++ G+AH+H I+HRDL +N+ +
Sbjct: 82 YMVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNN 141
Query: 555 RNDIKIGDFGLA-KFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKID 613
R +KI DFGLA ++ G T V T +Y APE+ G +
Sbjct: 142 RGILKICDFGLAREY----------------GSPLKPYTQLVVTLWYRAPELLLGAKEYS 185
Query: 614 EKADMYSLGIVFFEL 628
DM+S+G +F EL
Sbjct: 186 TAIDMWSVGCIFAEL 200
>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TEY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TEY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TEY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. There are two subtypes
of plant MAPKs based on the conserved phosphorylation
motif present in the activation loop, TEY and TDY. This
subfamily represents the TEY subtype and is further
subdivided into three groups (A, B, and C). Group A is
represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4
(NtNTF4), among others. They are mostly involved in
environmental and hormonal responses. AtMPK3 and AtMPK6
are also key regulators for stomatal development and
patterning. Group B is represented by AtMPK4, AtMPK13,
and NtNTF6, among others. They may be involved in both
cell division and environmental stress response. AtMPK4
also participates in regulating innate immunity. Group C
is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa
MAPK4 (OsMAPK4), among others. They may also be involved
in stress responses. AtMPK1 and AtMPK2 are activated
following mechanical injury and in the presence of
stress chemicals such as jasmonic acid, hydrogen
peroxide and abscisic acid. OsMAPK4 is also called
OsMSRMK3 for Multiple Stress-Responsive MAPK3.
Length = 337
Score = 80.5 bits (199), Expect = 5e-16
Identities = 60/241 (24%), Positives = 95/241 (39%), Gaps = 50/241 (20%)
Query: 388 PLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYYQ 447
P+G G +G V KN A+KKI + R LRE+ L L H++V+
Sbjct: 12 PIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVI---- 67
Query: 448 AWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPRTLR 507
+ D+ ++ +YI E L
Sbjct: 68 -------------------------------AIKDIMPPPHREAFNDVYIVYELMDTDLH 96
Query: 508 QVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
Q+ S + + Q++ GL +IH ++HRDL P+N+ +A D+KI DFGLA+
Sbjct: 97 QIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLAR 156
Query: 568 FLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFE 627
+ F T+ V T +Y APE+ + D++S+G +F E
Sbjct: 157 -----TTSEKGDFMTE----------YVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAE 201
Query: 628 L 628
L
Sbjct: 202 L 202
>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the
Serine/Threonine Kinase, p38delta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38delta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38delta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38delta, also called MAPK13, is found in
skeletal muscle, heart, lung, testis, pancreas, and
small intestine. It regulates microtubule function by
phosphorylating Tau. It activates the c-jun promoter and
plays a role in G2 cell cycle arrest. It also controls
the degration of c-Myb, which is associated with myeloid
leukemia and poor prognosis in colorectal cancer.
p38delta is the main isoform involved in regulating the
differentiation and apoptosis of keratinocytes.
Length = 342
Score = 80.3 bits (198), Expect = 7e-16
Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 54/246 (21%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+ L+ +G G +G V +K G A+KK+ +S R RE+ L +QH++V
Sbjct: 17 YTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENV 76
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
+ + T D F + Y+ M Y
Sbjct: 77 IGLLDVF--TSAVSGDE-------------FQD-------------------FYLVMPYM 102
Query: 503 PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
L+++ ++ +L Q++ GL +IH GIIHRDL P N+ + ++KI D
Sbjct: 103 QTDLQKIMGH--PLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILD 160
Query: 563 FGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLG 622
FGLA+ E TG V T +Y APE+ W ++ D++S+G
Sbjct: 161 FGLARHADAEM------------------TGYVVTRWYRAPEVILNWMHYNQTVDIWSVG 202
Query: 623 IVFFEL 628
+ E+
Sbjct: 203 CIMAEM 208
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 6. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 78.1 bits (192), Expect = 1e-15
Identities = 77/319 (24%), Positives = 132/319 (41%), Gaps = 68/319 (21%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDK-SLPVNDRILREVATLSRLQ 438
L +F+ + +G G F V LD + A+KK+++ + ++E+ L +L
Sbjct: 1 LANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLN 60
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H +V++Y ++ E + A + D++ Q
Sbjct: 61 HPNVIKYLDSFIEDNELNI----------------VLELADAGDLS-------------Q 91
Query: 499 M-EYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
M +Y + R + E W F Q+ + H+H + ++HRD+ P N+F A
Sbjct: 92 MIKYFKKQKRLIPE-------RTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGV 144
Query: 558 IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI--EQGWPKIDEK 615
+K+GD GL +F + T S+ VGT +Y +PE E G+ + K
Sbjct: 145 VKLGDLGLGRFFSSKT----------TAAHSL-----VGTPYYMSPERIHENGY---NFK 186
Query: 616 ADMYSLGIVFFE---LWHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMS- 671
+D++SLG + +E L PF L ++ + PP +SE+ LR L+S
Sbjct: 187 SDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEK---LRELVSM 243
Query: 672 ---PSPSDRPSATELLQDA 687
P P RP + Q A
Sbjct: 244 CIYPDPDQRPDIGYVHQIA 262
>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein
Serine/Threonine Kinase, STK10 or Lymphocyte-oriented
kinase. Serine/threonine kinases (STKs), STK10
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
STK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Other names for STK10 include
lymphocyte-oriented kinase (LOK) and Xenopus polo-like
kinase kinase 1 (xPlkk1). STK10 is highly expressed in
lymphocytes and is responsible in regulating leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. It plays a role in regulating the CD28
responsive element in T cells, and may also function as
a regulator of polo-like kinase 1 (Plk1), a protein
which is overexpressed in multiple tumor types.
Length = 292
Score = 78.9 bits (194), Expect = 1e-15
Identities = 83/317 (26%), Positives = 129/317 (40%), Gaps = 76/317 (23%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+E + LG G FG V KNK G A K I K + + D ++ E+ L+ H ++
Sbjct: 14 WEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEE-ELEDYMV-EIEILATCNHPYI 71
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
V+ A++ +DG L+I +E+C
Sbjct: 72 VKLLGAFY------WDGK----------------------------------LWIMIEFC 91
Query: 503 PR-TLRQVFESYDHFDKELAWHLF-RQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKI 560
P + + D E + RQ++E L ++H IIHRDL N+ DIK+
Sbjct: 92 PGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKL 151
Query: 561 GDFGL-AKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI-----EQGWPKIDE 614
DFG+ AK +K L + +F +GT ++ APE+ + P D
Sbjct: 152 ADFGVSAKNVK--TLQRRDSF--------------IGTPYWMAPEVVMCETMKDTP-YDY 194
Query: 615 KADMYSLGIVFFELWHPFSTAMERQIVLSDLKQKGELPPS------WVAKFSEQESLLRR 668
KAD++SLGI E+ E + LK PP+ W +F + L+
Sbjct: 195 KADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRD---FLKT 251
Query: 669 LMSPSPSDRPSATELLQ 685
+ P RPSA +LL+
Sbjct: 252 ALDKHPETRPSAAQLLE 268
>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase,
c-Jun N-terminal Kinase. Serine/Threonine Kinases
(STKs), c-Jun N-terminal kinase (JNK) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The JNK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. JNKs are
mitogen-activated protein kinases (MAPKs) that are
involved in many stress-activated responses including
those during inflammation, neurodegeneration, apoptosis,
and persistent pain sensitization, among others. They
are also essential regulators of physiological and
pathological processes and are involved in the
pathogenesis of several diseases such as diabetes,
atherosclerosis, stroke, Parkinson's and Alzheimer's.
Vetebrates harbor three different JNK genes (Jnk1, Jnk2,
and Jnk3) that are alternatively spliced to produce at
least 10 isoforms. JNKs are specifically activated by
the MAPK kinases MKK4 and MKK7, which are in turn
activated by upstream MAPK kinase kinases as a result of
different stimuli including stresses such as ultraviolet
(UV) irradiation, hyperosmolarity, heat shock, or
cytokines. JNKs activate a large number of different
substrates based on specific stimulus, cell type, and
cellular condition, and may be implicated in seemingly
contradictory functions.
Length = 353
Score = 78.6 bits (194), Expect = 2e-15
Identities = 70/266 (26%), Positives = 113/266 (42%), Gaps = 60/266 (22%)
Query: 364 SVDSGSPNMSLPSSRYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPV 423
SV+ G ++ RY N L+P+G G G V + + G++ A+KK+ +++
Sbjct: 4 SVEVGDSTFTVLK-RYQN----LKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTH 58
Query: 424 NDRILREVATLSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADV 483
R RE+ + + H++++ +
Sbjct: 59 AKRAYRELVLMKLVNHKNIIGLLNVF---------------------------------- 84
Query: 484 TGQENKLESTYLYIQMEYCPRTLRQVFE-SYDHFDKELAWHLFRQIVEGLAHIHGQGIIH 542
T Q++ E +Y+ ME L QV + DH E +L Q++ G+ H+H GIIH
Sbjct: 85 TPQKSLEEFQDVYLVMELMDANLCQVIQMDLDH---ERMSYLLYQMLCGIKHLHSAGIIH 141
Query: 543 RDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTA 602
RDL P+NI + +KI DFGLA+ T G S T V T +Y A
Sbjct: 142 RDLKPSNIVVKSDCTLKILDFGLAR----------------TAGTSFMMTPYVVTRYYRA 185
Query: 603 PEIEQGWPKIDEKADMYSLGIVFFEL 628
PE+ G E D++S+G + E+
Sbjct: 186 PEVILGMG-YKENVDIWSVGCIMGEM 210
>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 3. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 3 (MST3) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST3
phosphorylates the STK NDR and may play a role in cell
cycle progression and cell morphology. It may also
regulate paxillin and consequently, cell migration. MST3
is present in human placenta, where it plays an
essential role in the oxidative stress-induced apoptosis
of trophoblasts in normal spontaneous delivery.
Dysregulation of trophoblast apoptosis may result in
pregnancy complications such as preeclampsia and
intrauterine growth retardation.
Length = 277
Score = 77.4 bits (190), Expect = 2e-15
Identities = 75/306 (24%), Positives = 128/306 (41%), Gaps = 62/306 (20%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
F +L+ +G G FG V + + A+K I L++ + D I +E+ LS+ +V
Sbjct: 6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIED-IQQEITVLSQCDSPYV 64
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
+YY ++ L+ T L+I MEY
Sbjct: 65 TKYYGSY----------------------------------------LKDTKLWIIMEYL 84
Query: 503 PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
D+ + R+I++GL ++H + IHRD+ N+ ++K+ D
Sbjct: 85 GGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLAD 144
Query: 563 FGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLG 622
FG+A L Q+ ++ VGT F+ APE+ + D KAD++SLG
Sbjct: 145 FGVAGQLTDTQIKRNTF---------------VGTPFWMAPEVIKQ-SAYDSKADIWSLG 188
Query: 623 IVFFEL--WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQ-ESLLRRLMSPSPSDRPS 679
I EL P + + VL + + PP+ +S+ + + ++ PS RP+
Sbjct: 189 ITAIELAKGEPPHSELHPMKVLFLIPKNN--PPTLEGNYSKPLKEFVEACLNKEPSFRPT 246
Query: 680 ATELLQ 685
A ELL+
Sbjct: 247 AKELLK 252
>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine
Kinase, Apoptosis signal-regulating kinase.
Serine/threonine kinases (STKs), Apoptosis
signal-regulating kinase (ASK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ASK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Subfamily members
are mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1,
ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. ASK1 (also called
MAPKKK5) functions in the c-Jun N-terminal kinase (JNK)
and p38 MAPK signaling pathways by directly activating
their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It
plays important roles in cytokine and stress responses,
as well as in reactive oxygen species (ROS)-mediated
cellular responses. ASK1 is implicated in various
diseases mediated by oxidative stress including
inschemic heart disease, hypertension, vessel injury,
brain ischemia, Fanconi anemia, asthma, and pulmonary
edema, among others. ASK2 (also called MAPKKK6)
functions only in a heteromeric complex with ASK1, and
can activate ASK1 by direct phosphorylation. The
function of MAPKKK15 is still unknown.
Length = 268
Score = 77.2 bits (190), Expect = 3e-15
Identities = 81/312 (25%), Positives = 127/312 (40%), Gaps = 76/312 (24%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKD--KSLPVNDRILREVATLSRLQHQHVVRYY 446
LG G +G V ++ A+K+I +D P+++ E+A S L+H+++V+Y
Sbjct: 16 LGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHE----EIALHSYLKHRNIVQY- 70
Query: 447 QAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPR-T 505
L S E+ + I ME P +
Sbjct: 71 ---------------------LGSD------------------SENGFFKIFMEQVPGGS 91
Query: 506 LRQVFESY--DHFDKELAWHLF-RQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI-KIG 561
L + S D E + +QI+EGL ++H I+HRD+ +N+ + + + KI
Sbjct: 92 LSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKIS 151
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE-IEQGWPKIDEKADMYS 620
DFG +K L G++ GT Y APE I++G AD++S
Sbjct: 152 DFGTSKRL---------------AGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWS 196
Query: 621 LGIVFFELWH---PFSTAMERQIVLSDL---KQKGELPPSWVAKFSEQESLLRRLMSPSP 674
LG E+ PF E Q + + K E+P S A E ++ + R P P
Sbjct: 197 LGCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSA---EAKNFILRCFEPDP 253
Query: 675 SDRPSATELLQD 686
R SA +LLQD
Sbjct: 254 DKRASAHDLLQD 265
>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 2 (CDKL2) and CDKL3 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL2 and CDKL3
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL2, also called
p56 KKIAMRE, is expressed in testis, kidney, lung, and
brain. It functions mainly in mature neurons and plays
an important role in learning and memory. Inactivation
of CDKL3, also called NKIAMRE (NKIATRE in rat), by
translocation is associated with mild mental
retardation. It has been reported that CDKL3 is lost in
leukemic cells having a chromosome arm 5q deletion, and
may contribute to the transformed phenotype.
Length = 286
Score = 76.7 bits (189), Expect = 5e-15
Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 56/249 (22%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
+E L +G G +G V+ CK+K G+ A+KK + V +RE+ L +L+H+
Sbjct: 1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHE 60
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++V + +V ++ +L Y+ E
Sbjct: 61 NLV-----------------------------------NLIEVFRRKKRL-----YLVFE 80
Query: 501 YCPRTLRQVFESYDH-FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
+ T+ E Y + D+ QI+ G+ H IIHRD+ P NI +K
Sbjct: 81 FVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVK 140
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMY 619
+ DFG A+ L A P + T V T +Y APE+ G K D++
Sbjct: 141 LCDFGFARTL---------AAPGE------VYTDYVATRWYRAPELLVGDTKYGRAVDIW 185
Query: 620 SLGIVFFEL 628
++G + E+
Sbjct: 186 AVGCLVTEM 194
>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK1
specifically binds with JAMP (JNK1-associated membrane
protein), which regulates the duration of JNK1 activity
in response to stimuli. Specific JNK1 substrates include
Itch and SG10, which are implicated in Th2 responses and
airway inflammation, and microtubule dynamics and
axodendritic length, respectively. Mice deficient in
Jnk1 are protected against arthritis, obesity, type 2
diabetes, cardiac cell death, and non-alcoholic liver
disease, suggesting that JNK1 may play roles in the
pathogenesis of these diseases.
Length = 364
Score = 77.8 bits (191), Expect = 5e-15
Identities = 65/249 (26%), Positives = 104/249 (41%), Gaps = 53/249 (21%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQH 439
L ++ L+P+G G G V + + R+ A+KK+ ++ R RE+ + + H
Sbjct: 23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNH 82
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
++++ + T Q++ E +YI M
Sbjct: 83 KNIIGLLNVF----------------------------------TPQKSLEEFQDVYIVM 108
Query: 500 EYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
E L QV + D E +L Q++ G+ H+H GIIHRDL P+NI + +K
Sbjct: 109 ELMDANLCQVIQM--ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLK 166
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMY 619
I DFGLA+ T G S T V T +Y APE+ G E D++
Sbjct: 167 ILDFGLAR----------------TAGTSFMMTPYVVTRYYRAPEVILGM-GYKENVDIW 209
Query: 620 SLGIVFFEL 628
S+G + E+
Sbjct: 210 SVGCIMGEM 218
>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the
Serine/Threonine Kinase, p38gamma Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38gamma subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38gamma subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38gamma, also called MAPK12, is predominantly
expressed in skeletal muscle. Unlike p38alpha and
p38beta, p38gamma is insensitive to pyridinylimidazoles.
It displays an antagonizing function compared to
p38alpha. p38gamma inhibits, while p38alpha stimulates,
c-Jun phosphorylation and AP-1 mediated transcription.
p38gamma also plays a role in the signaling between Ras
and the estrogen receptor and has been implicated to
increase cell invasion and breast cancer progression. In
Xenopus, p38gamma is critical in the meiotic maturation
of oocytes.
Length = 343
Score = 77.3 bits (190), Expect = 5e-15
Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 53/246 (21%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+ +L+ +G G +G V ++ G A+KK+ +S R RE+ L ++H++V
Sbjct: 17 YRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENV 76
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
+ G+ D T + Y+ M +
Sbjct: 77 I---------GLLDV-------------------------FTPDLSLDRFHDFYLVMPFM 102
Query: 503 PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
L ++ + ++ ++ L Q+++GL +IH GIIHRDL P N+ + ++KI D
Sbjct: 103 GTDLGKLMK-HEKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILD 161
Query: 563 FGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLG 622
FGLA+ Q D + TG V T +Y APE+ W + D++S+G
Sbjct: 162 FGLAR-----QTDSEM-------------TGYVVTRWYRAPEVILNWMHYTQTVDIWSVG 203
Query: 623 IVFFEL 628
+ E+
Sbjct: 204 CIMAEM 209
>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein
Serine/Threonine Kinase, STK25 or Yeast
Sps1/Ste20-related kinase 1. Serine/threonine kinases
(STKs), STK25 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The STK25 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. STK25 is also called Ste20/oxidant stress
response kinase 1 (SOK1) or yeast Sps1/Ste20-related
kinase 1 (YSK1). STK25 is localized in the Golgi
apparatus through its interaction with the Golgi matrix
protein GM130. It may play a role in the regulation of
cell migration and polarization. STK25 binds and
phosphorylates CCM3 (cerebral cavernous malformation 3),
also called PCD10 (programmed cell death 10), and may
play a role in apoptosis. Human STK25 is a candidate
gene responsible for pseudopseudohypoparathyroidism
(PPHP), a disease that shares features with the Albright
hereditary osteodystrophy (AHO) phenotype.
Length = 277
Score = 75.1 bits (184), Expect = 2e-14
Identities = 74/307 (24%), Positives = 127/307 (41%), Gaps = 64/307 (20%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
F +L+ +G G FG V + A+K I L++ + D I +E+ LS+ ++
Sbjct: 6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIED-IQQEITVLSQCDSPYI 64
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
RYY ++ L+ T L+I MEY
Sbjct: 65 TRYYGSY----------------------------------------LKGTKLWIIMEYL 84
Query: 503 PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
++ + R+I++GL ++H + IHRD+ N+ + D+K+ D
Sbjct: 85 GGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLAD 144
Query: 563 FGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLG 622
FG+A L Q+ ++ VGT F+ APE+ + D KAD++SLG
Sbjct: 145 FGVAGQLTDTQIKRNTF---------------VGTPFWMAPEVIKQ-SAYDFKADIWSLG 188
Query: 623 IVFFELWH---PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQ-ESLLRRLMSPSPSDRP 678
I EL P S +++ K PP+ ++S+ + + ++ P RP
Sbjct: 189 ITAIELAKGEPPNSDLHPMRVLFLIPKNS---PPTLEGQYSKPFKEFVEACLNKDPRFRP 245
Query: 679 SATELLQ 685
+A ELL+
Sbjct: 246 TAKELLK 252
>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1
(MEKK1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK1 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK1 activates the extracellular
signal-regulated kinase 1/2 (ERK1/2) and c-Jun
N-terminal kinase (JNK) pathways by activating their
respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively.
MEKK1 is important in regulating cell survival and
apoptosis. MEKK1 also plays a role in cell migration,
tissue maintenance and homeostasis, and wound healing.
Length = 268
Score = 74.5 bits (183), Expect = 2e-14
Identities = 74/316 (23%), Positives = 117/316 (37%), Gaps = 69/316 (21%)
Query: 387 QPLGHGGFGHVVLCKNKLDGRHYAVKKIRL----KDKSLPVNDRILREVATLSRLQHQHV 442
Q LG G F ++ G AVK++ + V + + +E+ ++RL H H+
Sbjct: 6 QQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHI 65
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
+R A E F+ W +G S S A V + Y
Sbjct: 66 IRMLGATCEDS--HFNLFVEWMAGGSVSHLLSKYGAFKEAVI--------------INYT 109
Query: 503 PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDAR-NDIKIG 561
Q++ GL+++H IIHRD+ N+ D+ ++I
Sbjct: 110 -----------------------EQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIA 146
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ-VGTYFYTAPEIEQGWPKIDEKADMYS 620
DFG A L AA T G GQ +GT + APE+ +G D++S
Sbjct: 147 DFGAAARL--------AAKGTGAGEFQ----GQLLGTIAFMAPEVLRGEQ-YGRSCDVWS 193
Query: 621 LGIVFFEL------WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSE--QESLLRRLMSP 672
+G V E+ W+ + ++ PS S ++ LR L
Sbjct: 194 VGCVIIEMATAKPPWNAEKHSNHLALIFKIASATT--APSIPEHLSPGLRDVTLRCLEL- 250
Query: 673 SPSDRPSATELLQDAL 688
P DRP + ELL+ +
Sbjct: 251 QPEDRPPSRELLKHPV 266
>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity
Protein Kinases, MAP kinase kinases 3 and 6. Protein
kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MKK3 and MKK6 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK3 and MKK6 are dual-specificity PKs that
phosphorylate and activate their downstream target, p38
MAPK, on specific threonine and tyrosine residues.
MKK3/6 plays roles in the regulation of cell cycle
progression, cytokine- and stress-induced apoptosis,
oncogenic transformation, and adult tissue regeneration.
In addition, MKK6 plays a critical role in osteoclast
survival in inflammatory disease while MKK3 is
associated with tumor invasion, progression, and poor
patient survival in glioma.
Length = 283
Score = 74.8 bits (184), Expect = 2e-14
Identities = 81/331 (24%), Positives = 129/331 (38%), Gaps = 97/331 (29%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVND----RILREVATLSR 436
+D E ++ LG G +G V ++ G AVK+IR VN R+L ++ R
Sbjct: 1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRAT-----VNSQEQKRLLMDLDISMR 55
Query: 437 LQH-QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYL 495
+ V +Y A F G DV
Sbjct: 56 SVDCPYTVTFYGALFREG----------------------------DV------------ 75
Query: 496 YIQMEYCPRTL----RQVFESYDHFDKELAWHLFRQIVEGLAHIHGQ-GIIHRDLTPNNI 550
+I ME +L ++V++ +++ + IV+ L ++H + +IHRD+ P+N+
Sbjct: 76 WICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNV 135
Query: 551 FFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE---IEQ 607
+ +K+ DFG++ +L D SV T G Y APE E
Sbjct: 136 LINRNGQVKLCDFGISGYL------------VD----SVAKTIDAGCKPYMAPERINPEL 179
Query: 608 GWPKIDEKADMYSLGIVFFEL---------WH-PFSTAMERQIVLSDLKQKGELPPSWVA 657
D K+D++SLGI EL W PF LKQ E P +
Sbjct: 180 NQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPF----------QQLKQVVEEPSPQLP 229
Query: 658 --KFSEQ-ESLLRRLMSPSPSDRPSATELLQ 685
KFS + + + + + + +RP+ ELLQ
Sbjct: 230 AEKFSPEFQDFVNKCLKKNYKERPNYPELLQ 260
>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of
Phototropin-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Phototropin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
phototropin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Included in this subfamily
are plant phototropins and predominantly uncharacterized
fungal STKs whose catalytic domains resemble the
phototropin kinase domain. One protein from Neurospora
crassa is called nrc-2. Phototropins are blue-light
receptors that control responses such as phototropism,
stromatal opening, and chloroplast movement in order to
optimize the photosynthetic efficiency of plants. They
are light-activated STKs that contain an N-terminal
photosensory domain and a C-terminal catalytic domain.
The N-terminal domain contains two LOV (Light, Oxygen or
Voltage) domains that binds FMN. Photoexcitation of the
LOV domains results in autophosphorylation at multiple
sites and activation of the catalytic domain. Neurospora
crassa nrc-2 plays a role in growth and development by
controlling entry into the conidiation program.
Length = 316
Score = 75.4 bits (186), Expect = 2e-14
Identities = 77/322 (23%), Positives = 127/322 (39%), Gaps = 73/322 (22%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVND----RILREVATLSRL 437
F++++ LG G G V L + K G+ +A+K + DK + R+L E L+ L
Sbjct: 2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVL---DKKEMIKRNKVKRVLTEQEILATL 58
Query: 438 QHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYI 497
H + Y A F+T TYL +
Sbjct: 59 DHPFLPTLY-ASFQT---------------------------------------ETYLCL 78
Query: 498 QMEYCP-----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFF 552
M+YCP R L++ +E+A +++ L ++H GI++RDL P NI
Sbjct: 79 VMDYCPGGELFRLLQRQPGKC--LSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILL 136
Query: 553 DARNDIKIGDFGLAKFLKLE--QLDQDAAFPTDTGGVS-------VDGTGQ-----VGTY 598
I + DF L+K +E + + + V+ + VGT
Sbjct: 137 HESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTE 196
Query: 599 FYTAPEIEQGWPKIDEKADMYSLGIVFFELWH---PFSTAMERQIVLSDLKQKGELPPSW 655
Y APE+ G D ++LGI+ +E+ + PF + + + LK++ P S
Sbjct: 197 EYIAPEVISGDGH-GSAVDWWTLGILLYEMLYGTTPFKGSNRDETFSNILKKEVTFPGSP 255
Query: 656 VAKFSEQESLLRRLMSPSPSDR 677
S L+R+L+ PS R
Sbjct: 256 -PVSSSARDLIRKLLVKDPSKR 276
>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional.
Length = 496
Score = 76.8 bits (189), Expect = 2e-14
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 25/187 (13%)
Query: 506 LRQVFESYDHFDKELAWH----LFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
LRQ +S ++ H LF Q++ + H+H + +IHRD+ NI + +K+G
Sbjct: 126 LRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLG 185
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVD-GTGQVGTYFYTAPEIEQGWPKIDEKADMYS 620
DFG +K VS D G GT +Y APEI + P +KADM+S
Sbjct: 186 DFGFSKMY--------------AATVSDDVGRTFCGTPYYVAPEIWRRKP-YSKKADMFS 230
Query: 621 LGIVFFELW---HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
LG++ +EL PF +++ L + + P ++ E + ++ L+S P R
Sbjct: 231 LGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDPLPPSISP--EMQEIVTALLSSDPKRR 288
Query: 678 PSATELL 684
PS+++LL
Sbjct: 289 PSSSKLL 295
>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, 90 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 90 kDa
ribosomal protein S6 kinase (RSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. RSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family.
They are activated by signaling inputs from
extracellular regulated kinase (ERK) and
phosphoinositide dependent kinase 1 (PDK1). ERK
phosphorylates and activates the CTD of RSK, serving as
a docking site for PDK1, which phosphorylates and
activates the NTD, which in turn phosphorylates all
known RSK substrates. RSKs act as downstream effectors
of mitogen-activated protein kinase (MAPK) and play key
roles in mitogen-activated cell growth, differentiation,
and survival. Mammals possess four RSK isoforms (RSK1-4)
from distinct genes. RSK proteins are also referred to
as MAP kinase-activated protein kinases (MAPKAPKs),
p90-RSKs, or p90S6Ks.
Length = 318
Score = 75.2 bits (185), Expect = 2e-14
Identities = 84/309 (27%), Positives = 125/309 (40%), Gaps = 86/309 (27%)
Query: 386 LQPLGHGGFGHVVLCKNKL---DGRHYAVKKIRLKDKSLPVNDRI--LREVATLSRLQHQ 440
L+ LG G FG V L + G+ YA+K LK +L V DR+ E L+ + H
Sbjct: 1 LKVLGQGSFGKVFLVRKITGPDAGQLYAMKV--LKKATLKVRDRVRTKMERDILAEVNHP 58
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM- 499
+V+ + A F+T E KL YL +
Sbjct: 59 FIVKLHYA-FQT----------------------------------EGKL---YLILDFL 80
Query: 500 ---EYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
+ R ++V F +E ++ L H+H GII+RDL P NI D
Sbjct: 81 RGGDLFTRLSKEVM-----FTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEG 135
Query: 557 DIKIGDFGLAKFLKLEQLDQDA---AFPTDTGGVSVDGTGQVGTYFYTAPEI--EQGWPK 611
IK+ DFGL+K E +D + +F GT Y APE+ +G
Sbjct: 136 HIKLTDFGLSK----ESIDHEKKAYSF--------------CGTVEYMAPEVVNRRGH-- 175
Query: 612 IDEKADMYSLGIVFFELWH---PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRR 668
+ AD +S G++ FE+ PF ++ + LK K +P E +SLLR
Sbjct: 176 -TQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKAKLGMPQFLSP---EAQSLLRA 231
Query: 669 LMSPSPSDR 677
L +P++R
Sbjct: 232 LFKRNPANR 240
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 77.2 bits (190), Expect = 4e-14
Identities = 58/207 (28%), Positives = 88/207 (42%), Gaps = 21/207 (10%)
Query: 487 ENKLESTYLYIQMEYCP-RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDL 545
+ L+ EY P RTLR+V + L Q+++ LA H QGI+HRDL
Sbjct: 46 SGEAPPGLLFAVFEYVPGRTLREVLAADGALPAGETGRLMLQVLDALACAHNQGIVHRDL 105
Query: 546 TPNNIFFDARND---IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTA 602
P NI K+ DFG+ L + D D A T T V +GT Y A
Sbjct: 106 KPQNIMVSQTGVRPHAKVLDFGIGTLLPGVR-DADVATLTRTTEV-------LGTPTYCA 157
Query: 603 PEIEQGWPKIDEKADMYSLGIVFFELW--HPFSTAMERQIVLSDLKQKGELP---PSWVA 657
PE +G P + +D+Y+ G++F E +L +Q + P W+A
Sbjct: 158 PEQLRGEP-VTPNSDLYAWGLIFLECLTGQRVVQGASVAEIL--YQQLSPVDVSLPPWIA 214
Query: 658 KFSEQESLLRRLMSPSPSDRPSATELL 684
+ +LR+ ++ P R ++ L
Sbjct: 215 GHPLGQ-VLRKALNKDPRQRAASAPAL 240
>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is
expressed primarily in the brain, and to a lesser extent
in the heart and testis. Mice deficient in Jnk3 are
protected against kainic acid-induced seizures, stroke,
sciatic axotomy neural death, and neuronal death due to
NGF deprivation, oxidative stress, or exposure to
beta-amyloid peptide. This suggests that JNK3 may play
roles in the pathogenesis of these diseases.
Length = 355
Score = 74.7 bits (183), Expect = 4e-14
Identities = 69/271 (25%), Positives = 114/271 (42%), Gaps = 60/271 (22%)
Query: 358 SQFWKPSVDSGSPNMSLPSSRYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLK 417
+QF+ SV+ G ++ L ++ L+P+G G G V + + R+ A+KK+
Sbjct: 1 NQFY--SVEVGDSTFTV-----LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRP 53
Query: 418 DKSLPVNDRILREVATLSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRA 477
++ R RE+ + + H++++ +
Sbjct: 54 FQNQTHAKRAYRELVLMKCVNHKNIISLLNVF---------------------------- 85
Query: 478 ASSADVTGQENKLESTYLYIQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHG 537
T Q++ E +Y+ ME L QV + D E +L Q++ G+ H+H
Sbjct: 86 ------TPQKSLEEFQDVYLVMELMDANLCQVIQM--ELDHERMSYLLYQMLCGIKHLHS 137
Query: 538 QGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGT 597
GIIHRDL P+NI + +KI DFGLA+ T G S T V T
Sbjct: 138 AGIIHRDLKPSNIVVKSDCTLKILDFGLAR----------------TAGTSFMMTPYVVT 181
Query: 598 YFYTAPEIEQGWPKIDEKADMYSLGIVFFEL 628
+Y APE+ G E D++S+G + E+
Sbjct: 182 RYYRAPEVILGM-GYKENVDIWSVGCIMGEM 211
>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIA myosin.
Serine/threonine kinases (STKs), class IIIA myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
In photoreceptor cells, they may also function as cargo
carriers during light-dependent translocation of
proteins such as transducin and arrestin. Class IIIA
myosin is highly expressed in retina and in inner ear
hair cells. It is localized to the distal ends of
actin-bundled structures. Mutations in human myosin IIIA
are responsible for progressive nonsyndromic hearing
loss. Human myosin IIIA possesses ATPase and kinase
activities, and the ability to move actin filaments in a
motility assay. It may function as a cellular
transporter capable of moving along actin bundles in
sensory cells.
Length = 286
Score = 73.9 bits (181), Expect = 4e-14
Identities = 71/314 (22%), Positives = 132/314 (42%), Gaps = 62/314 (19%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQ-HQH 441
+E ++ +G G +G V NK +G AVK + D +++ I E L L H +
Sbjct: 20 WEIIETIGKGTYGKVFKVLNKKNGSKAAVK---ILDPIHDIDEEIEAEYNILKALSDHPN 76
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
VV++Y +++ V + GD +W L + S D+
Sbjct: 77 VVKFYGMYYKKDVKN--GDQLWLVLELCN------GGSVTDL------------------ 110
Query: 502 CPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
++ + + ++ + ++ + + GL H+H IHRD+ NNI +K+
Sbjct: 111 ----VKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLV 166
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI----EQGWPKIDEKAD 617
DFG++ L +L ++ + VGT F+ APE+ +Q D + D
Sbjct: 167 DFGVSAQLTSTRLRRNTS---------------VGTPFWMAPEVIACEQQLDSTYDARCD 211
Query: 618 MYSLGIVFFELWHPFSTAMERQIVLSDLKQKGELPPS------WVAKFSEQESLLRRLMS 671
++SLGI EL + + + K PP+ W +F++ +R+ ++
Sbjct: 212 VWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPPTLHQPELWSNEFND---FIRKCLT 268
Query: 672 PSPSDRPSATELLQ 685
RP+ ++LLQ
Sbjct: 269 KDYEKRPTVSDLLQ 282
>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase 15.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 15 (MAPK15) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK15 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. Human MAPK15 is also called
Extracellular signal Regulated Kinase 8 (ERK8) while the
rat protein is called ERK7. ERK7 and ERK8 display both
similar and different biochemical properties. They
autophosphorylate and activate themselves and do not
require upstream activating kinases. ERK7 is
constitutively active and is not affected by
extracellular stimuli whereas ERK8 shows low basal
activity and is activated by DNA-damaging agents. ERK7
and ERK8 also have different substrate profiles. Genome
analysis shows that they are orthologs with similar gene
structures. ERK7 and ERK 8 may be involved in the
signaling of some nuclear receptor transcription
factors. ERK7 regulates hormone-dependent degradation of
estrogen receptor alpha while ERK8 down-regulates the
transcriptional co-activation androgen and
glucocorticoid receptors.
Length = 337
Score = 74.1 bits (183), Expect = 6e-14
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 47/193 (24%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
Q+++ L +IH +IHRDL P+NI ++ +K+ DFGLA+ L +L+++ P
Sbjct: 115 QLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLAR--SLSELEENPENP----- 167
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELW----------------- 629
T V T +Y APEI G + + DM+S+G + E+
Sbjct: 168 ---VLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEK 224
Query: 630 -----------------HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSP 672
PF+ M + K EL P + LL++L+
Sbjct: 225 IIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPK---ASDDALDLLKKLLVF 281
Query: 673 SPSDRPSATELLQ 685
+P+ R +A E L+
Sbjct: 282 NPNKRLTAEEALE 294
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 74.1 bits (182), Expect = 6e-14
Identities = 77/325 (23%), Positives = 129/325 (39%), Gaps = 97/325 (29%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDR---ILREVATLSRLQH 439
F +L+ +GHG FG V ++ A+KK+ K N++ I++EV L +L+H
Sbjct: 17 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQ--SNEKWQDIIKEVRFLQQLRH 74
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
+ + Y + L ++ M
Sbjct: 75 PNTIEYKGCY----------------------------------------LREHTAWLVM 94
Query: 500 EYCPRTLRQVFESYDH--FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
EYC + + E + + E+A + ++GLA++H IHRD+ NI
Sbjct: 95 EYCLGSASDILEVHKKPLQEVEIA-AICHGALQGLAYLHSHERIHRDIKAGNILLTEPGT 153
Query: 558 IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI----EQGWPKID 613
+K+ DFG A + P ++ VGT ++ APE+ ++G + D
Sbjct: 154 VKLADFGSASLVS----------PANSF---------VGTPYWMAPEVILAMDEG--QYD 192
Query: 614 EKADMYSLGIVFFELWHPFSTAMERQIVLSDLKQKGEL-------PPS-----WVAKFSE 661
K D++SLGI EL ER+ L ++ L P+ W F
Sbjct: 193 GKVDVWSLGITCIEL-------AERKPPLFNMNAMSALYHIAQNDSPTLSSNDWSDYFRN 245
Query: 662 -QESLLRRLMSPSPSDRPSATELLQ 685
+S L+++ P DRPS+ ELL+
Sbjct: 246 FVDSCLQKI----PQDRPSSEELLK 266
>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein
Serine/Threonine Kinase, 70 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 70 kDa
ribosomal protein S6 kinase (p70S6K) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The p70S6K subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. p70S6K (or S6K)
contains only one catalytic kinase domain, unlike p90
ribosomal S6 kinases (RSKs). It acts as a downstream
effector of the STK mTOR (mammalian Target of Rapamycin)
and plays a role in the regulation of the translation
machinery during protein synthesis. p70S6K also plays a
pivotal role in regulating cell size and glucose
homeostasis. Its targets include S6, the translation
initiation factor eIF3, and the insulin receptor
substrate IRS-1, among others. Mammals contain two
isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta).
Length = 323
Score = 74.1 bits (182), Expect = 6e-14
Identities = 60/194 (30%), Positives = 86/194 (44%), Gaps = 37/194 (19%)
Query: 495 LYIQMEYCPRTLRQVFESYDHFDKE------LAWHLFRQIVEGLAHIHGQGIIHRDLTPN 548
LY+ +EY E + H ++E A +I L H+H QGII+RDL P
Sbjct: 75 LYLILEYLSGG-----ELFMHLEREGIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPE 129
Query: 549 NIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQ- 607
NI DA+ +K+ DFGL K E + + T GT Y APEI
Sbjct: 130 NILLDAQGHVKLTDFGLCK----ESIHEGTVTHT-----------FCGTIEYMAPEILMR 174
Query: 608 -GWPKIDEKADMYSLGIVFFELWH---PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQE 663
G K D +SLG + +++ PF+ ++ + LK K LPP E
Sbjct: 175 SGHGK---AVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKLNLPPYLT---PEAR 228
Query: 664 SLLRRLMSPSPSDR 677
LL++L+ +PS R
Sbjct: 229 DLLKKLLKRNPSSR 242
>gnl|CDD|238396 cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase
(HisRS)-like catalytic core domain. HisRS is a
homodimer. It is responsible for the attachment of
histidine to the 3' OH group of ribose of the
appropriate tRNA. This domain is primarily responsible
for ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. Class II assignment is based upon
its structure and the presence of three characteristic
sequence motifs. This domain is also found at the
C-terminus of eukaryotic GCN2 protein kinase and at the
N-terminus of the ATP phosphoribosyltransferase
accessory subunit, HisZ. HisZ along with HisG catalyze
the first reaction in histidine biosynthesis. HisZ is
found only in a subset of bacteria and differs from
HisRS in lacking a C-terminal anti-codon binding domain.
Length = 261
Score = 73.0 bits (180), Expect = 6e-14
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 14/174 (8%)
Query: 751 DTELRDYVVQVTKEMFRQHCAK-----HLEIEPMYLLGDCPQFKRNTVKLLTHGGDLLEL 805
+ LR Y+ +E+F ++ + E ++L + + + GG L L
Sbjct: 1 EAALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLAL 60
Query: 806 SHELRLPFIRWAISNQKS---SFKRYEISSVYRR---AIGHSPPNRYLQGDFDIIGGASA 859
+L P R N S K Y I V+R G + Q +IIG S
Sbjct: 61 RPDLTAPVARAVAENLLSLPLPLKLYYIGPVFRYERPQKGR--YREFYQVGVEIIGSDSP 118
Query: 860 LTEAEVLKVTMDIVTRFFHAESCDIHLNHGDLLEAIWSWAGIKAEHREKVAELL 913
L +AEV+ + ++I+ + I +NH +L+ I + E+ E++ + L
Sbjct: 119 LADAEVIALAVEILEALG-LKDFQIKINHRGILDGIAGLLEDREEYIERLIDKL 171
>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK2
is specifically translocated to the mitochondria during
dopaminergic cell death. Specific substrates include the
microtubule-associated proteins DCX and Tau, as well as
TIF-IA which is involved in ribosomal RNA synthesis
regulation. Mice deficient in Jnk2 show protection
against arthritis, type 1 diabetes, atherosclerosis,
abdominal aortic aneurysm, cardiac cell death,
TNF-induced liver damage, and tumor growth, indicating
that JNK2 may play roles in the pathogenesis of these
diseases.
Length = 359
Score = 74.3 bits (182), Expect = 8e-14
Identities = 70/271 (25%), Positives = 112/271 (41%), Gaps = 60/271 (22%)
Query: 358 SQFWKPSVDSGSPNMSLPSSRYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLK 417
SQF+ SV ++ L +++L+P+G G G V + + G + AVKK+
Sbjct: 5 SQFY--SVQVADSTFTV-----LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRP 57
Query: 418 DKSLPVNDRILREVATLSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRA 477
++ R RE+ L + H++++ +
Sbjct: 58 FQNQTHAKRAYRELVLLKCVNHKNIISLLNVF---------------------------- 89
Query: 478 ASSADVTGQENKLESTYLYIQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHG 537
T Q++ E +Y+ ME L QV + D E +L Q++ G+ H+H
Sbjct: 90 ------TPQKSLEEFQDVYLVMELMDANLCQVI--HMELDHERMSYLLYQMLCGIKHLHS 141
Query: 538 QGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGT 597
GIIHRDL P+NI + +KI DFGLA+ T + T V T
Sbjct: 142 AGIIHRDLKPSNIVVKSDCTLKILDFGLAR----------------TACTNFMMTPYVVT 185
Query: 598 YFYTAPEIEQGWPKIDEKADMYSLGIVFFEL 628
+Y APE+ G E D++S+G + EL
Sbjct: 186 RYYRAPEVILGM-GYKENVDIWSVGCIMGEL 215
>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the
Serine/Threonine Kinase, p38alpha Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38alpha subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38alpha subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38alpha, also called MAPK14, is expressed in
most tissues and is the major isoform involved in the
immune and inflammatory response. It is the central p38
MAPK involved in myogenesis. It plays a role in
regulating cell cycle check-point transition and
promoting cell differentiation. p38alpha also regulates
cell proliferation and death through crosstalk with the
JNK pathway. Its substrates include MAPK activated
protein kinase 2 (MK2), MK5, and the transcription
factors ATF2 and Mitf.
Length = 345
Score = 73.9 bits (181), Expect = 8e-14
Identities = 65/246 (26%), Positives = 103/246 (41%), Gaps = 53/246 (21%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
++ L P+G G +G V + G AVKK+ +S+ R RE+ L ++H++V
Sbjct: 19 YQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV 78
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
+ G+ D F+ A S + E +Y+
Sbjct: 79 I---------GLLD---------------VFT--PARSLE--------EFNDVYLVTHLM 104
Query: 503 PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
L + + D + + L QI+ GL +IH IIHRDL P+N+ + ++KI D
Sbjct: 105 GADLNNIVKCQKLTDDHVQF-LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILD 163
Query: 563 FGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLG 622
FGLA+ E TG V T +Y APEI W ++ D++S+G
Sbjct: 164 FGLARHTDDEM------------------TGYVATRWYRAPEIMLNWMHYNQTVDIWSVG 205
Query: 623 IVFFEL 628
+ EL
Sbjct: 206 CIMAEL 211
>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase
kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain,
functionally uncharacterized subgroup 1. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MEKK3-like subfamily is
composed of MEKK3, MEKK2, and related proteins, all
containing an N-terminal PB1 domain, which mediates
oligomerization, and a C-terminal catalytic domain.
MEKK2 and MEKK3 are mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks),
proteins that phosphorylate and activate MAPK kinases
(MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
and activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK2 and MEKK3 activate MEK5
(also called MKK5), which activates extracellular
signal-regulated kinase 5 (ERK5). The ERK5 cascade plays
roles in promoting cell proliferation, differentiation,
neuronal survival, and neuroprotection. MEKK3 plays an
essential role in embryonic angiogenesis and early heart
development. MEKK2 and MEKK3 can also activate the
MAPKs, c-Jun N-terminal kinase (JNK) and p38, through
their respective MAPKKs.
Length = 264
Score = 72.7 bits (178), Expect = 9e-14
Identities = 65/245 (26%), Positives = 107/245 (43%), Gaps = 57/245 (23%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRL----KDKSLPVNDRILREVATLSRLQHQHVVR 444
LG G FG V LC + GR AVK++ ++ S VN + E+ L L+H +V+
Sbjct: 10 LGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVN-ALECEIQLLKNLRHDRIVQ 68
Query: 445 YYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPR 504
YY G L E KL I +EY P
Sbjct: 69 YY-------------------GCLRDPE--------------EKKLS-----IFVEYMPG 90
Query: 505 -TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDF 563
+++ ++Y + + RQI++G++++H I+HRD+ NI D+ ++K+GDF
Sbjct: 91 GSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDF 150
Query: 564 GLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGI 623
G +K ++ + TG SV GT ++ +PE+ G KAD++S+
Sbjct: 151 GASKRIQ-------TICMSGTGIKSV-----TGTPYWMSPEVISG-EGYGRKADVWSVAC 197
Query: 624 VFFEL 628
E+
Sbjct: 198 TVVEM 202
>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and
Dbf2p-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), ROCK- and NDR-like
subfamily, fungal Sid2p- and Dbf2p-like proteins,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sid2p- and
Dbf2p-like group is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This group contains fungal kinases including
Schizosaccharomyces pombe Sid2p and Saccharomyces
cerevisiae Dbf2p. Group members show similarity to NDR
kinases in that they contain an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Sid2p plays a
crucial role in the septum initiation network (SIN) and
in the initiation of cytokinesis. Dbf2p is important in
regulating the mitotic exit network (MEN) and in
cytokinesis.
Length = 333
Score = 73.6 bits (181), Expect = 1e-13
Identities = 71/260 (27%), Positives = 103/260 (39%), Gaps = 68/260 (26%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSL-PVNDR--ILREVATLSRL 437
DF+ L +G GG+G V L K K G A+K R+K L +N+ +L E L+
Sbjct: 1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALK--RMKKSLLFKLNEVRHVLTERDILTTT 58
Query: 438 QHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYI 497
+ + +V+ A F D YLY+
Sbjct: 59 KSEWLVKLLYA--------FQDDE--------------------------------YLYL 78
Query: 498 QMEYCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
MEY P R + + ++ A ++ E + +H G IHRDL P N DA
Sbjct: 79 AMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASG 138
Query: 557 DIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKA 616
IK+ DFGL+K G V+ VG+ Y APE+ +G D
Sbjct: 139 HIKLTDFGLSK-----------------GIVTY-ANSVVGSPDYMAPEVLRG-KGYDFTV 179
Query: 617 DMYSLGIVFFEL---WHPFS 633
D +SLG + +E + PFS
Sbjct: 180 DYWSLGCMLYEFLCGFPPFS 199
>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 6.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 6, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK6 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK6 may play a role in stress responses
through its activation by the mitogen-activated protein
kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6
is highly expressed in the brain. It is not required for
viability, but together with PAK5, it is required for
normal levels of locomotion and activity, and for
learning and memory. Increased expression of PAK6 is
found in primary and metastatic prostate cancer. PAK6
may play a role in the regulation of motility.
Length = 297
Score = 72.8 bits (178), Expect = 1e-13
Identities = 74/328 (22%), Positives = 129/328 (39%), Gaps = 78/328 (23%)
Query: 365 VDSGSPNMSLPSSRYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVN 424
VD G P L E +G G G V + + K GR AVK + L+ +
Sbjct: 14 VDQGDPRSLL---------ENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQR--R 62
Query: 425 DRILREVATLSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVT 484
+ + EV + QHQ+VV Y+++ +
Sbjct: 63 ELLFNEVVIMRDYQHQNVVEMYKSY---------------------------------LV 89
Query: 485 GQENKLESTYLYIQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRD 544
G+E L++ ME+ S ++E + +++ L ++H QG+IHRD
Sbjct: 90 GEE-------LWVLMEFLQGGALTDIVSQTRLNEEQIATVCESVLQALCYLHSQGVIHRD 142
Query: 545 LTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE 604
+ ++I +K+ DFG Q+ +D VGT ++ APE
Sbjct: 143 IKSDSILLTLDGRVKLSDFGFCA-----QISKDVP----------KRKSLVGTPYWMAPE 187
Query: 605 IEQGWPKIDEKADMYSLGIVFFELWH---PFSTAMERQIVLSDLKQKGELPPSWVAKFSE 661
+ P E D++SLGI+ E+ P+ + + +K+ + PP + +
Sbjct: 188 VISRTPYGTE-VDIWSLGIMVIEMVDGEPPYFS----DSPVQAMKRLRDSPPPKLKNAHK 242
Query: 662 QESLLR----RLMSPSPSDRPSATELLQ 685
+LR R+++ P +R +A ELL
Sbjct: 243 ISPVLRDFLERMLTREPQERATAQELLD 270
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and
a C-terminal actin-binding motor domain. Class III
myosins are present in the photoreceptors of
invertebrates and vertebrates and in the auditory hair
cells of mammals. The kinase domain of myosin III can
phosphorylate several cytoskeletal proteins,
conventional myosin regulatory light chains, and can
autophosphorylate the C-terminal motor domain. Myosin
III may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
It may also function as a cargo carrier during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
some MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Length = 275
Score = 72.3 bits (178), Expect = 1e-13
Identities = 72/332 (21%), Positives = 131/332 (39%), Gaps = 93/332 (28%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRL-QH 439
FE ++ +G G +G V ++K G+ A+K + + + + I E L + H
Sbjct: 6 GIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDE---EEEIKEEYNILRKYSNH 62
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
++ +Y A+ + + G +++L ++ M
Sbjct: 63 PNIATFYGAFIK-----------------------------KNPPGNDDQL-----WLVM 88
Query: 500 EYCP--------RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIF 551
E C + LR+ + +E ++ R+ + GLA++H +IHRD+ NI
Sbjct: 89 ELCGGGSVTDLVKGLRKKGKR---LKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNIL 145
Query: 552 FDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI----EQ 607
++K+ DFG++ L +T +GT ++ APE+ EQ
Sbjct: 146 LTKNAEVKLVDFGVSAQLDSTLGR------RNTF---------IGTPYWMAPEVIACDEQ 190
Query: 608 GWPKIDEKADMYSLGIVFFEL---------WHPFSTAMERQIVLSD---LKQKGELPPSW 655
D ++D++SLGI EL HP +I + LK P +W
Sbjct: 191 PDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALF--KIPRNPPPTLKS----PENW 244
Query: 656 VAKFSE--QESLLRRLMSPSPSDRPSATELLQ 685
KF++ E L++ + RP ELL+
Sbjct: 245 SKKFNDFISECLIK-----NYEQRPFMEELLE 271
>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP
kinase kinase 7 (MKK7) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK7 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK7 is a dual-specificity PK that phosphorylates and
activates its downstream target, c-Jun N-terminal kinase
(JNK), on specific threonine and tyrosine residues.
Although MKK7 is capable of dual phosphorylation, it
prefers to phosphorylate the threonine residue of JNK.
Thus, optimal activation of JNK requires both MKK4 (not
included in this subfamily) and MKK7. MKK7 is primarily
activated by cytokines. MKK7 is essential for liver
formation during embryogenesis. It plays roles in G2/M
cell cycle arrest and cell growth. In addition, it is
involved in the control of programmed cell death, which
is crucial in oncogenesis, cancer chemoresistance, and
antagonism to TNFalpha-induced killing, through its
inhibition by Gadd45beta and the subsequent suppression
of the JNK cascade.
Length = 296
Score = 72.4 bits (178), Expect = 1e-13
Identities = 81/322 (25%), Positives = 125/322 (38%), Gaps = 79/322 (24%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQH 439
LND E L +G G G V + K G AVK++R N RIL ++ + H
Sbjct: 14 LNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNK-EENKRILMDLDVVL-KSH 71
Query: 440 Q--HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYI 497
++V+ Y + + D D ++I
Sbjct: 72 DCPYIVKCYGYF----ITDSD------------------------------------VFI 91
Query: 498 QMEY----CPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHI-HGQGIIHRDLTPNNIFF 552
ME + L+++ +++ + IV+ L ++ G+IHRD+ P+NI
Sbjct: 92 CMELMSTCLDKLLKRI---QGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILL 148
Query: 553 DARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE---IEQGW 609
DA ++K+ DFG++ L D S T G Y APE
Sbjct: 149 DASGNVKLCDFGISGRL------------VD----SKAKTRSAGCAAYMAPERIDPPDPN 192
Query: 610 PKIDEKADMYSLGIVFFEL---WHPFSTAMERQIVLSDLKQKG--ELPPSWVAKFSEQ-E 663
PK D +AD++SLGI EL P+ VL+ + Q+ LPP+ FS
Sbjct: 193 PKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLPPN--EGFSPDFC 250
Query: 664 SLLRRLMSPSPSDRPSATELLQ 685
S + ++ RP ELLQ
Sbjct: 251 SFVDLCLTKDHRKRPKYRELLQ 272
>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the
Serine/Threonine Kinase, p38beta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38beta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38beta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38beta, also called MAPK11, is widely expressed
in tissues and shows more similarity with p38alpha than
with the other isoforms. Both are sensitive to
pyridinylimidazoles and share some common substrates
such as MAPK activated protein kinase 2 (MK2) and the
transcription factors ATF2, c-Fos and, ELK-1. p38beta is
involved in regulating the activation of the
cyclooxygenase-2 promoter and the expression of
TGFbeta-induced alpha-smooth muscle cell actin.
Length = 343
Score = 72.8 bits (178), Expect = 2e-13
Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 55/247 (22%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
++ L P+G G +G V + + AVKK+ +SL R RE+ L ++H++V
Sbjct: 17 YQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENV 76
Query: 443 VRYYQAWF-ETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
+ + T + +F+ ++ L + +N +
Sbjct: 77 IGLLDVFTPATSIENFN--EVYLVTNLMGADLNN-----------------------IVK 111
Query: 502 CPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
C + S +H L Q++ GL +IH GIIHRDL P+N+ + +++I
Sbjct: 112 CQKL------SDEHVQ-----FLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRIL 160
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSL 621
DFGLA+ Q D + TG V T +Y APEI W ++ D++S+
Sbjct: 161 DFGLAR-----QADDEM-------------TGYVATRWYRAPEIMLNWMHYNQTVDIWSV 202
Query: 622 GIVFFEL 628
G + EL
Sbjct: 203 GCIMAEL 209
>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent
protein Kinase 8-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK8-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK8, CDC2L6, and similar proteins. CDK8
functions as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDC2L6 also associates with
Mediator in complexes lacking CDK8. In VP16-dependent
transcriptional activation, CDK8 and CDC2L6 exerts
opposing effects by positive and negative regulation,
respectively, in similar conditions.
Length = 316
Score = 72.3 bits (178), Expect = 2e-13
Identities = 66/264 (25%), Positives = 104/264 (39%), Gaps = 74/264 (28%)
Query: 383 FEELQPLGHGGFGHVVLCKNK--LDGRHYAVKKIR-LKDKSLPVNDRILREVATLSRLQH 439
+E +G G +G V K K DG+ YA+KK + K++ ++ RE+A L L+H
Sbjct: 2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKH 61
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
++VV + F A S +Y+
Sbjct: 62 ENVVSLVEV------------------------FLEHADKS--------------VYLLF 83
Query: 500 EYCPRTLRQVFESYDHFD---------KELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNI 550
+Y L Q+ + + K L W QI+ G+ ++H ++HRDL P NI
Sbjct: 84 DYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLW----QILNGVHYLHSNWVLHRDLKPANI 139
Query: 551 F----FDARNDIKIGDFGLAKFLK--LEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE 604
R +KIGD GLA+ L+ L D V T +Y APE
Sbjct: 140 LVMGEGPERGVVKIGDLGLARLFNAPLKPL--------------ADLDPVVVTIWYRAPE 185
Query: 605 IEQGWPKIDEKADMYSLGIVFFEL 628
+ G + D++++G +F EL
Sbjct: 186 LLLGARHYTKAIDIWAIGCIFAEL 209
>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, in response to
various stimuli such as growth factors, hormones,
neurotransmitters, cellular stress, and pro-inflammatory
cytokines. This triggers phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) in the
C-terminal extension of NTD, which facilitates the
phosphorylation of the A-loop and activates the NTD,
which in turn phosphorylates downstream targets. MSKs
are predominantly nuclear proteins. They are widely
expressed in many tissues including heart, brain, lung,
liver, kidney, and pancreas. There are two isoforms of
MSK, called MSK1 and MSK2.
Length = 288
Score = 71.7 bits (176), Expect = 2e-13
Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 514 DHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQ 573
+HF + +IV L H+H GII+RD+ NI D+ + + DFGL+K E+
Sbjct: 100 EHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEE 159
Query: 574 LDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKA-DMYSLGIVFFELW--- 629
++ +F GT Y APE+ +G +KA D +SLG++ FEL
Sbjct: 160 EERAYSF--------------CGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGA 205
Query: 630 HPFSTAMER----QIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
PF+ E+ +I LK K P + A E +++L+ P R
Sbjct: 206 SPFTVDGEQNSQSEISRRILKSKPPFPKTMSA---EARDFIQKLLEKDPKKR 254
>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The GRK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. GRKs phosphorylate and
regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors, which
regulate some part of nearly all physiological
functions. Phosphorylated GPCRs bind to arrestins, which
prevents further G protein signaling despite the
presence of activating ligand. GRKs contain a central
catalytic domain, flanked by N- and C-terminal
extensions. The N-terminus contains an RGS (regulator of
G protein signaling) homology (RH) domain and several
motifs. The C-terminus diverges among different groups
of GRKs. There are seven types of GRKs, named GRK1 to
GRK7. They are subdivided into three main groups: visual
(GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and
GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is
widespread while GRK1/4/7 show a limited tissue
distribution. The substrate spectrum of the widely
expressed GRKs partially overlaps. GRKs play important
roles in the cardiovascular, immune, respiratory,
skeletal, and nervous systems.
Length = 277
Score = 71.0 bits (174), Expect = 4e-13
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 23/156 (14%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
QI+ GL H+H + I++RDL P N+ D +++I D GLA LK +
Sbjct: 103 QIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGK-------KI---- 151
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWH---PFSTAMERQIVLS 643
G+ GT Y APE+ QG D D ++LG +E+ PF + ++
Sbjct: 152 -----KGRAGTPGYMAPEVLQG-EVYDFSVDWFALGCTLYEMIAGRSPFR-QRKEKVEKE 204
Query: 644 DLKQKG-ELPPSWVAKFSEQ-ESLLRRLMSPSPSDR 677
+LK++ E+ + KFS + + L L+ P R
Sbjct: 205 ELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDPEKR 240
Score = 35.6 bits (82), Expect = 0.14
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKI---RLKDK---SLPVNDRILRE 430
LG GGFG V C+ K G+ YA KK+ RLK + + +N++ + E
Sbjct: 1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILE 48
>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Bypass
UAS Requirement 1 and similar proteins.
Serine/Threonine Kinases (STKs), Bypass UAS Requirement
1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
BUR1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. BUR1, also called
SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK)
that is functionally equivalent to mammalian CDK9. It
associates with the cyclin BUR2. BUR genes were
orginally identified in a genetic screen as factors
involved in general transcription. The BUR1/BUR2 complex
phosphorylates the C-terminal domain of RNA polymerase
II. In addition, this complex regulates histone
modification by phosporylating Rad6 and mediating the
association of the Paf1 complex with chromatin.
Length = 311
Score = 70.8 bits (174), Expect = 7e-13
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 24/158 (15%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
Q++EG+ ++H I+HRD+ NI D + +KI DFGLA+ GG
Sbjct: 123 QLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARPYD----GPPPNPKGGGGG 178
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWHPFSTAMERQIVLSDLK 646
+ T V T +Y PE+ G + D++ +G VF E++ R+ + L+
Sbjct: 179 GTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMF-------TRRPI---LQ 228
Query: 647 QKGELPPSWVAKFSEQESLLRRLM-SPSPSDRPSATEL 683
K ++ +Q L+ +L +P+ P L
Sbjct: 229 GKSDI---------DQLHLIFKLCGTPTEETWPGWRSL 257
Score = 51.9 bits (125), Expect = 8e-07
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKS--LPVNDRILREVATLSRL 437
L D+E L LG G FG V + GR A+KKI + ++ P+ LRE+ L +L
Sbjct: 7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPIT--ALREIKILKKL 64
Query: 438 QHQHVVR 444
+H +VV
Sbjct: 65 KHPNVVP 71
>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-2 is
specifically expressed in neurons in the central nervous
system, mainly in terminally differentiated neurons. It
associates with Trap (Tudor repeat associator with
PCTAIRE-2) and could play a role in regulating
mitochondrial function in neurons.
Length = 309
Score = 70.4 bits (172), Expect = 8e-13
Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 59/251 (23%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLK-DKSLPVNDRILREVATLSRLQ 438
+ + +L+ LG G + V ++KL A+K+IRL+ ++ P +REV+ L L+
Sbjct: 5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCT--AIREVSLLKDLK 62
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H ++V TL ++++ L +
Sbjct: 63 HANIV-----------------------TLHDIVHTDKS-----------------LTLV 82
Query: 499 MEYCPRTLRQVFESYDHFDKELAWHLF-RQIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
EY + L+Q + + +F QI+ GLA+ H + ++HRDL P N+ + R +
Sbjct: 83 FEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGE 142
Query: 558 IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKAD 617
+K+ DFGLA+ + PT T + +V T +Y P++ G + + D
Sbjct: 143 LKLADFGLAR---------AKSVPTKT------YSNEVVTLWYRPPDVLLGSSEYSTQID 187
Query: 618 MYSLGIVFFEL 628
M+ +G +FFE+
Sbjct: 188 MWGVGCIFFEM 198
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein
Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase
4. Serine/threonine kinases (STKs), yeast
Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The YSK4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. YSK4 is a
putative MAPKKK, whose mammalian gene has been isolated.
MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals.
Length = 265
Score = 69.9 bits (171), Expect = 8e-13
Identities = 71/313 (22%), Positives = 125/313 (39%), Gaps = 75/313 (23%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRL----KDKSLPVNDRILREVATLSRLQHQHVVR 444
LG G +G V C G+ AVK++ L + +++ EV L L+H ++V+
Sbjct: 8 LGKGAYG-TVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQ 66
Query: 445 YYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPR 504
Y GT L+ + I ME+ P
Sbjct: 67 YL-------------------GTC---------------------LDDNTISIFMEFVPG 86
Query: 505 -TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDF 563
++ + + + + +QI++G+A++H ++HRD+ NN+ IK+ DF
Sbjct: 87 GSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDF 146
Query: 564 GLAKFLKLEQLDQDAAFPTDTGGVSVDGT------GQVGTYFYTAPEI--EQGWPKIDEK 615
G A+ L V + GT GT ++ APE+ E G+ + K
Sbjct: 147 GCARRLAW---------------VGLHGTHSNMLKSMHGTPYWMAPEVINESGYGR---K 188
Query: 616 ADMYSLGIVFFEL--WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQE-SLLRRLMSP 672
+D++S+G FE+ P +M+R + + L P FS + ++
Sbjct: 189 SDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTR 248
Query: 673 SPSDRPSATELLQ 685
+RPSA +LL+
Sbjct: 249 DQHERPSALQLLR 261
>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Mitogen-Activated Protein Kinase MPK1.
Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MPK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of the MAPKs MPK1 from Saccharomyces
cerevisiae, Pmk1 from Schizosaccharomyces pombe, and
similar proteins. MAPKs are important mediators of
cellular responses to extracellular signals. MPK1 (also
called Slt2) and Pmk1 (also called Spm1) are
stress-activated MAPKs that regulate the cell wall
integrity (CWI) pathway, and are therefore important in
the maintainance of cell shape, cell wall construction,
morphogenesis, and ion homeostasis. MPK1 is activated in
response to cell wall stress including heat stimulation,
osmotic shock, UV irradiation, and any agents that
interfere with cell wall biogenesis such as chitin
antagonists, caffeine, or zymolase. MPK1 is regulated by
the MAP2Ks Mkk1/2, which are regulated by the MAP3K
Bck1. Pmk1 is also activated by multiple stresses
including elevated temperatures, hyper- or hypotonic
stress, glucose deprivation, exposure to cell-wall
damaging compounds, and oxidative stress. It is
regulated by the MAP2K Pek1, which is regulated by the
MAP3K Mkh1.
Length = 332
Score = 70.5 bits (173), Expect = 8e-13
Identities = 64/251 (25%), Positives = 101/251 (40%), Gaps = 54/251 (21%)
Query: 383 FEELQPLGHGGFGHVVLCKNK--LDGRHYAVKKI-RLKDKSLPVNDRILREVATLSRLQ- 438
+E ++ LG G +G V +N + A+KKI + K + + R LRE+ L +
Sbjct: 2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKI-LAKRALRELKLLRHFRG 60
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H+++ Y D D ++ YLY +
Sbjct: 61 HKNITCLY-----------DMDIVFPGN-----------------------FNELYLYEE 86
Query: 499 -MEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
ME L Q+ S QI+ GL +IH ++HRDL P N+ +A +
Sbjct: 87 LMEA---DLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCE 143
Query: 558 IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKAD 617
+KI DFGLA+ F + G + T V T +Y APEI + + D
Sbjct: 144 LKICDFGLAR-----------GFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAID 192
Query: 618 MYSLGIVFFEL 628
++S+G + EL
Sbjct: 193 VWSVGCILAEL 203
>gnl|CDD|234586 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.
Length = 412
Score = 71.3 bits (176), Expect = 8e-13
Identities = 89/429 (20%), Positives = 147/429 (34%), Gaps = 128/429 (29%)
Query: 798 HGGDLLELSHELRLPFIRWAISNQKSSFKRYEISSVYR--RAIGHSP-PNRY---LQGDF 851
GG L L E P +R I ++ FK Y I ++R R P RY Q
Sbjct: 72 KGGRSLTLRPEGTAPVVRAVIEHKLQPFKLYYIGPMFRYER-----PQKGRYRQFHQFGV 126
Query: 852 DIIGGASALTEAEVLKVTMDIVTRFFHAESCDIHLNHGDLLEAIWSWAGIKAEHREKVAE 911
++IG S L +AEV+ + D+L+A+ G+K + +
Sbjct: 127 EVIGSDSPLADAEVIALAA-------------------DILKAL----GLK-GLKLLINS 162
Query: 912 LLAMMGSLRPQSSEWKSKWVVIR---RQLLQEL------NLAEAVVNRLQTVGLR----- 957
L G IR R+ L L E RL+T LR
Sbjct: 163 L----GDF------------EIRANYRKALVGFLEKGLDELDEDSKRRLETNPLRILDKK 206
Query: 958 --FCGAADQALPRLRGALPADKPTRKALDEL--YLRIWRIEKNIYIDALMPPIESYHRNL 1013
+ P+L L D+ +++ +EL L I Y +
Sbjct: 207 DKEDQELLKDAPKLLDYL--DEESKEHFEELKELLDALGIP--------------YVIDP 250
Query: 1014 F------------FQVFSVKEKYPATLVEGTLLAVGGRYDYLLHRMWDREYVGYASRTNP 1061
F+ + GT+ GGRYD L+ + P
Sbjct: 251 RLVRGLDYYTGTVFEFVTDDLGAQ-----GTVCG-GGRYDGLVEQF-----------GGP 293
Query: 1062 P-SGVGASLALETII---QHYPVDFKPVRNEAGTSVLVCSRGGGGLLVERMELVAELWEE 1117
P VG ++ +E ++ + E V V G L ++L +L
Sbjct: 294 PTPAVGFAIGVERLLLLLEE--------LGEEPVDVYVVPLGEDAEL-AALKLAEKLRAA 344
Query: 1118 NIKAQFVPVPDPSLTEQYEYASEHDIKCLVILTDTGAQKGLVKVRHLDVKKEKEVQRESL 1177
I+ + + L +Q++YA + + ++IL + G V V+ L +++ V + L
Sbjct: 345 GIRVE-LDYGGRKLKKQFKYADKSGARFVLILGEDELANGTVTVKDLRTGEQQTVPLDEL 403
Query: 1178 VRFLLDAIA 1186
V L + +A
Sbjct: 404 VEALKELLA 412
>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR1 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. NDR1 is
highly expressed in thymus, muscle, lung and spleen. It
is not an essential protein because mice deficient of
NDR1 remain viable and fertile. However, these mice
develop T-cell lymphomas and appear to be hypersenstive
to carcinogenic treatment. NDR1 appears to act as a
tumor suppressor. NDR1 is also called STK38.
Length = 363
Score = 70.8 bits (173), Expect = 9e-13
Identities = 76/300 (25%), Positives = 120/300 (40%), Gaps = 70/300 (23%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
DFE L+ +G G FG V L + K G YA+K ILR+ L + Q H
Sbjct: 2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMK--------------ILRKADMLEKEQVGH 47
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
+ E DS+W S ++KL LY+ ME+
Sbjct: 48 IRAERDILVE-------ADSLWVVKMFYSF---------------QDKLN---LYLIMEF 82
Query: 502 CPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKI 560
P + + D +E + V + IH G IHRD+ P+N+ D++ +K+
Sbjct: 83 LPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKL 142
Query: 561 GDFGLAKFLKLEQLDQ-----DAAFPTDTGGVSVDGT---------------GQVGTYFY 600
DFGL LK + + + P+D +++ VGT Y
Sbjct: 143 SDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDY 202
Query: 601 TAPEI--EQGWPKIDEKADMYSLGIVFFEL---WHPF--STAMERQIVLSDLKQKGELPP 653
APE+ + G+ K+ D +SLG++ +E+ + PF T E + + K+ PP
Sbjct: 203 IAPEVFMQTGYNKL---CDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNWKETLIFPP 259
>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-1 is
expressed ubiquitously and is localized in the
cytoplasm. Its kinase activity is cell cycle dependent
and peaks at the S and G2 phases. PCTAIRE-1 is highly
expressed in the brain and may play a role in regulating
neurite outgrowth. It can also associate with Trap
(Tudor repeat associator with PCTAIRE-2), a
physiological partner of PCTAIRE-2; with p11, a small
dimeric protein with similarity to S100; and with 14-3-3
proteins, mediators of phosphorylation-dependent
interactions in many different proteins.
Length = 301
Score = 70.0 bits (171), Expect = 9e-13
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 59/251 (23%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLK-DKSLPVNDRILREVATLSRLQ 438
L + +L LG G + V ++KL A+K+IRL+ ++ P +REV+ L L+
Sbjct: 5 LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCT--AIREVSLLKDLK 62
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H ++V + D+ E L +
Sbjct: 63 HANIVTLH-----------------------------------DIIHTEKSLTLVF---- 83
Query: 499 MEYCPRTLRQVFESYDHFDKELAWHLFR-QIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
EY + L+Q + + LF Q++ GL + H + ++HRDL P N+ + R +
Sbjct: 84 -EYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGE 142
Query: 558 IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKAD 617
+K+ DFGLA+ + PT T + +V T +Y P+I G + D
Sbjct: 143 LKLADFGLAR---------AKSIPTKT------YSNEVVTLWYRPPDILLGSTDYSTQID 187
Query: 618 MYSLGIVFFEL 628
M+ +G +F+E+
Sbjct: 188 MWGVGCIFYEM 198
>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit;
Provisional.
Length = 329
Score = 70.2 bits (172), Expect = 1e-12
Identities = 74/316 (23%), Positives = 124/316 (39%), Gaps = 85/316 (26%)
Query: 376 SSRYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIR----LKDKSLPVNDRILREV 431
SS L+DFE + LG G FG V + K+K G +YA+K ++ LK K + + +E
Sbjct: 13 SSWKLSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQV---QHVAQEK 69
Query: 432 ATLSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLE 491
+ L L H +V ++ + EN++
Sbjct: 70 SILMELSHPFIVNMMCSFQD-----------------------------------ENRV- 93
Query: 492 STYLYIQMEYCPRTLRQVFESYDH------FDKELAWHLFRQIVEGLAHIHGQGIIHRDL 545
Y +E+ E + H F ++A ++V ++H + II+RDL
Sbjct: 94 ----YFLLEFVVGG-----ELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKDIIYRDL 144
Query: 546 TPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI 605
P N+ D + +K+ DFG AK + D F GT Y APE+
Sbjct: 145 KPENLLLDNKGHVKVTDFGFAKKVP------DRTFTL------------CGTPEYLAPEV 186
Query: 606 EQGWPKIDEKA-DMYSLGIVFFEL---WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSE 661
Q K KA D +++G++ +E + PF +I L + + P+W
Sbjct: 187 IQS--KGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRLKF-PNWFD--GR 241
Query: 662 QESLLRRLMSPSPSDR 677
L++ L+ + R
Sbjct: 242 ARDLVKGLLQTDHTKR 257
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 70.2 bits (172), Expect = 1e-12
Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 43/181 (23%)
Query: 523 HLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPT 582
+ RQI+ G+A++H + I+HRD+ P+N+ ++ ++KI DFG+++ L + +D P
Sbjct: 172 DVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILA-QTMD-----PC 225
Query: 583 DTGGVSVDGTGQVGTYFYTAPE-----IEQGWPKIDEKA-DMYSLGIVFFELW---HPFS 633
++ VGT Y +PE + G D A D++SLG+ E + PF
Sbjct: 226 NS---------SVGTIAYMSPERINTDLNHG--AYDGYAGDIWSLGVSILEFYLGRFPF- 273
Query: 634 TAMERQ---------IVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELL 684
+ RQ I +S Q E P + +F + + P+ R SA +LL
Sbjct: 274 -GVGRQGDWASLMCAICMS---QPPEAPATASREF---RHFISCCLQREPAKRWSAMQLL 326
Query: 685 Q 685
Q
Sbjct: 327 Q 327
>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIB myosin.
Serine/threonine kinases (STKs), class IIIB myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
They may also function as cargo carriers during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. Class IIIB
myosin is expressed highly in retina. It is also present
in the brain and testis. The human class IIIB myosin
gene maps to a region that overlaps the locus for
Bardet-Biedl syndrome, which is characterized by
dysmorphic extremities, retinal dystrophy, obesity, male
hypogenitalism, and renal abnormalities.
Length = 291
Score = 68.9 bits (168), Expect = 2e-12
Identities = 82/329 (24%), Positives = 129/329 (39%), Gaps = 66/329 (20%)
Query: 368 GSPNMSLPSSRYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRI 427
G ++ P+ + +E ++ +G G +G V NK DG AVK + D V++ I
Sbjct: 13 GLESLGDPT----DTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKIL---DPISDVDEEI 65
Query: 428 LREVATLSRL-QHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQ 486
E L L H +VV++Y +++ G +W L
Sbjct: 66 EAEYNILQSLPNHPNVVKFYGMFYKAD--KLVGGQLWLVLELC----------------- 106
Query: 487 ENKLESTYLYIQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLT 546
N T L + C + L + SY + L GL H+H IIHRD+
Sbjct: 107 -NGGSVTELVKGLLICGQRLDEAMISYILYGALL----------GLQHLHNNRIIHRDVK 155
Query: 547 PNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI- 605
NNI +K+ DFG++ L +L ++ + VGT F+ APE+
Sbjct: 156 GNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTS---------------VGTPFWMAPEVI 200
Query: 606 --EQGWP-KIDEKADMYSLGIVFFELWHPFSTAMERQIVLSDLKQKGELPPS------WV 656
EQ + D + D++SLGI EL + V + K PP+ W
Sbjct: 201 ACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPEKWC 260
Query: 657 AKFSEQESLLRRLMSPSPSDRPSATELLQ 685
F+ + + + RPS T LL+
Sbjct: 261 RSFNH---FISQCLIKDFEARPSVTHLLE 286
>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), PCTAIRE-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The PCTAIRE-like subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily share sequence similarity with
Cyclin-Dependent Kinases (CDKs), which belong to a large
family of STKs that are regulated by their cognate
cyclins. Together, CDKs and cyclins are involved in the
control of cell-cycle progression, transcription, and
neuronal function. The association of PCTAIRE-like
proteins with cyclins has not been widely studied,
although PFTAIRE-1 has been shown to function as a CDK
which is regulated by cyclin D3 as well as the
membrane-associated cyclin Y. PCTAIRE-like proteins show
unusual expression patterns with high levels in
post-mitotic tissues, suggesting that they may be
involved in regulating post-mitotic cellular events.
Length = 291
Score = 68.9 bits (169), Expect = 2e-12
Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 59/251 (23%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLK-DKSLPVNDRILREVATLSRLQ 438
L +++L LG G + V ++KL G+ A+K+IRL+ ++ P +RE + L L+
Sbjct: 4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFT--AIREASLLKDLK 61
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H ++V TL D+ + L T ++
Sbjct: 62 HANIV-----------------------TLH------------DIIHTKKTL--TLVF-- 82
Query: 499 MEYCPRTLRQVFESYDHFDKELAWHLFR-QIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
EY L+Q + LF Q++ GLA+ H + ++HRDL P N+ R +
Sbjct: 83 -EYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGE 141
Query: 558 IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKAD 617
+K+ DFGLA+ + P+ T + +V T +Y P++ G + D
Sbjct: 142 LKLADFGLAR---------AKSVPSKT------YSNEVVTLWYRPPDVLLGSTEYSTSLD 186
Query: 618 MYSLGIVFFEL 628
M+ +G +F+E+
Sbjct: 187 MWGVGCIFYEM 197
>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine
Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyk2 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase catalytic domain. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Tyk2 is widely expressed in many tissues. It is involved
in signaling via the cytokine receptors IFN-alphabeta,
IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell
surface urokinase receptor (uPAR) signaling and plays a
role in modulating vascular smooth muscle cell (VSMC)
functional behavior in response to injury. Tyk2 is also
important in dendritic cell function and T helper (Th)1
cell differentiation. A homozygous mutation of Tyk2 was
found in a patient with hyper-IgE syndrome (HIES), a
primary immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 283
Score = 68.8 bits (168), Expect = 2e-12
Identities = 71/259 (27%), Positives = 103/259 (39%), Gaps = 67/259 (25%)
Query: 378 RYLNDFEELQPLGHGGFGHVVLCK----NKLDGRHYAVKKIRLKDKSLPVNDRILREVAT 433
RYL ++++ LG G FG V L N G AVK ++ ++ +E+
Sbjct: 4 RYL---KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLK-RECGQQNTSGWKKEINI 59
Query: 434 LSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLEST 493
L L H+++V+Y G G
Sbjct: 60 LKTLYHENIVKY------KGCCSEQGGKG------------------------------- 82
Query: 494 YLYIQMEYCPR-TLRQVFESYDHFDKELAWHLF-RQIVEGLAHIHGQGIIHRDLTPNNIF 551
L + MEY P +LR + +L LF +QI EG+A++H Q IHRDL N+
Sbjct: 83 -LQLIMEYVPLGSLRDYLPKHKLNLAQLL--LFAQQICEGMAYLHSQHYIHRDLAARNVL 139
Query: 552 FDARNDIKIGDFGLAKFLKLEQLDQDAAFPT--DTGGVSVDGTGQVGTYFYTAPEIEQGW 609
D +KIGDFGLAK A P + V DG V F+ A E +
Sbjct: 140 LDNDRLVKIGDFGLAK-----------AVPEGHEYYRVREDGDSPV---FWYAVECLKEN 185
Query: 610 PKIDEKADMYSLGIVFFEL 628
K +D++S G+ +EL
Sbjct: 186 -KFSYASDVWSFGVTLYEL 203
>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional.
Length = 357
Score = 69.5 bits (170), Expect = 3e-12
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 29/135 (21%)
Query: 494 YLYIQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD 553
Y Y+ P + Q A + +QI+EGL ++H Q IIHRD+ NIF +
Sbjct: 144 YTYLTKRSRPLPIDQ------------ALIIEKQILEGLRYLHAQRIIHRDVKTENIFIN 191
Query: 554 ARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKID 613
+ + IGD G A+F P G GT APE+ K +
Sbjct: 192 DVDQVCIGDLGAAQF--------PVVAPAF--------LGLAGTVETNAPEV-LARDKYN 234
Query: 614 EKADMYSLGIVFFEL 628
KAD++S GIV FE+
Sbjct: 235 SKADIWSAGIVLFEM 249
>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of
cAMP-dependent protein kinase-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), Fission yeast Suppressor of loss of
cAMP-dependent protein kinase (Sck1)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sck1-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of fungal proteins
with similarity to the Schizosaccharomyces pombe STK
Sck1. Sck1 plays a role in trehalase activation
triggered by glucose and a nitrogen source. Trehalase
catalyzes the cleavage of the disaccharide trehalose to
glucose. Trehalose, as a carbohydrate reserve and stress
metabolite, plays an important role in the response of
yeast to environmental changes.
Length = 330
Score = 69.2 bits (169), Expect = 3e-12
Identities = 84/344 (24%), Positives = 134/344 (38%), Gaps = 73/344 (21%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYYQA 448
+G G FG V + K R YA+K + K V + EVA H +
Sbjct: 1 IGKGTFGQVYQVRKKDTRRIYAMKVL---SKKEIVAKK---EVA--------HTIGERNI 46
Query: 449 WFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY-CPRTLR 507
T + + S + FS + S LY+ +Y L
Sbjct: 47 LVRTLLDE--------SPFIVGLKFSFQTDSD--------------LYLVTDYMSGGELF 84
Query: 508 QVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
+ F ++ A ++V L H+H I++RDL P NI DA I + DFGL+K
Sbjct: 85 WHLQKEGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSK 144
Query: 568 FLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI---EQGWPKIDEKADMYSLGIV 624
L + T+T GT Y APE+ E+G+ K D +SLG++
Sbjct: 145 ----ANLTDNKT--TNTF---------CGTTEYLAPEVLLDEKGYTK---HVDFWSLGVL 186
Query: 625 FFEL---WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR---- 677
FE+ W PF +Q+ + K P + ++ E ++ L++ +P R
Sbjct: 187 VFEMCCGWSPFYAEDTQQMYRNIAFGKVRFPKNVLS--DEGRQFVKGLLNRNPQHRLGAH 244
Query: 678 PSATELLQDALPPQMEYELLDNIL------RMMHSSEDTSIYDK 715
A EL + ++++LL ++ S ED S +D
Sbjct: 245 RDAVELKEHPFFADIDWDLLSKKQITPPFKPIVDSDEDVSNFDP 288
>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 2. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more
restricted distribution that SGK1 and is most abundantly
expressed in epithelial tissues including kidney, liver,
pancreas, and the choroid plexus of the brain. In vitro
cellular assays show that SGK2 can stimulate the
activity of ion channels, the glutamate transporter
EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Length = 321
Score = 68.8 bits (168), Expect = 3e-12
Identities = 73/281 (25%), Positives = 110/281 (39%), Gaps = 80/281 (28%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVK----KIRLKDKSLPVNDRILREVATLSR-LQHQHVV 443
+G G FG V+L K K DG YAVK K LK K + I+ E L + L+H +V
Sbjct: 3 IGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKE---QNHIMAERNVLLKNLKHPFLV 59
Query: 444 RYYQAWFETG-----VADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
+ + F+T V D+ V G E + ++Q
Sbjct: 60 GLHYS-FQTAEKLYFVLDY-------------------------VNGGE-----LFFHLQ 88
Query: 499 MEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
E C R F + ++ + ++H II+RDL P NI D++ +
Sbjct: 89 RERCFLEPRARFYA-------------AEVASAIGYLHSLNIIYRDLKPENILLDSQGHV 135
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQV--GTYFYTAPEIEQGWPKIDEKA 616
+ DFGL K GV + T GT Y APE+ + P D
Sbjct: 136 VLTDFGLCK-----------------EGVEPEETTSTFCGTPEYLAPEVLRKEP-YDRTV 177
Query: 617 DMYSLGIVFFELWH---PFSTAMERQIVLSDLKQKGELPPS 654
D + LG V +E+ + PF + Q+ + L + +LP
Sbjct: 178 DWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHKPLQLPGG 218
>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP
kinase kinase 4 (MKK4) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK4 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK4 is a dual-specificity PK that
phosphorylates and activates the downstream targets,
c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific
threonine and tyrosine residues. JNK and p38 are
collectively known as stress-activated MAPKs, as they
are activated in response to a variety of environmental
stresses and pro-inflammatory cytokines. Their
activation is associated with the induction of cell
death. Mice deficient in MKK4 die during embryogenesis
and display anemia, severe liver hemorrhage, and
abnormal hepatogenesis. MKK4 may also play roles in the
immune system and in cardiac hypertrophy. It plays a
major role in cancer as a tumor and metastasis
suppressor. Under certain conditions, MKK4 is
pro-oncogenic.
Length = 288
Score = 68.2 bits (167), Expect = 4e-12
Identities = 77/323 (23%), Positives = 119/323 (36%), Gaps = 80/323 (24%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVND-----RILREVATLS 435
D ++L +G G FG V +K G AVK+IR D R+L ++ +
Sbjct: 4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRS------TVDEKEQKRLLMDLDVVM 57
Query: 436 RLQH-QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTY 494
R ++V++Y A F G W L +
Sbjct: 58 RSSDCPYIVKFYGALFREGDC-------WICMELMDISLDK------------------- 91
Query: 495 LYIQMEYCPRTLRQVFESYD-HFDKELAWHLFRQIVEGLAHIHGQ-GIIHRDLTPNNIFF 552
Y + V+E +E+ + V+ L ++ + IIHRD+ P+NI
Sbjct: 92 FY----------KYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILL 141
Query: 553 DARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE--IEQGWP 610
D +IK+ DFG++ L D S+ T G Y APE
Sbjct: 142 DRNGNIKLCDFGISGQL------VD----------SIAKTRDAGCRPYMAPERIDPSARD 185
Query: 611 KIDEKADMYSLGIVFFELW---HPFSTAMERQIVLSDLKQ--KGE---LPPSWVAKFS-E 661
D ++D++SLGI +E+ P+ V L Q KG+ L S +FS
Sbjct: 186 GYDVRSDVWSLGITLYEVATGKFPYPKWNS---VFDQLTQVVKGDPPILSNSEEREFSPS 242
Query: 662 QESLLRRLMSPSPSDRPSATELL 684
+ + + S RP ELL
Sbjct: 243 FVNFINLCLIKDESKRPKYKELL 265
>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 5. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK5
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK5 is widely expressed in many tissues.
It associates with the membrane though an N-terminal
PIP2 binding domain and also binds phospholipids via its
C-terminus. GRK5 deficiency is associated with early
Alzheimer's disease in humans and mouse models. GRK5
also plays a crucial role in the pathogenesis of
sporadic Parkinson's disease. It participates in the
regulation and desensitization of PDGFRbeta, a receptor
tyrosine kinase involved in a variety of downstream
cellular effects including cell growth, chemotaxis,
apoptosis, and angiogenesis. GRK5 also regulates
Toll-like receptor 4, which is involved in innate and
adaptive immunity.
Length = 285
Score = 68.1 bits (166), Expect = 4e-12
Identities = 76/305 (24%), Positives = 117/305 (38%), Gaps = 59/305 (19%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKD-KSLPVNDRILREVATLSRLQHQH 441
F + + LG GGFG V C+ + G+ YA K++ K K L E L ++ Q
Sbjct: 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQF 61
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
VV A +ET A ++ G L ++ G E L+ E
Sbjct: 62 VVNLAYA-YETKDALCLVLTIMNGGDLKFHIYN---------MGNPGFEEERALFYAAEI 111
Query: 502 CPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
GL +H + ++RDL P NI D I+I
Sbjct: 112 LC---------------------------GLEDLHRENTVYRDLKPENILLDDYGHIRIS 144
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSL 621
D GLA +K+ + G S+ G+VGT Y APE+ + D + L
Sbjct: 145 DLGLA--VKIPE------------GESI--RGRVGTVGYMAPEVLNN-QRYTLSPDYWGL 187
Query: 622 GIVFFELWH---PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQ-ESLLRRLMSPSPSDR 677
G + +E+ PF E+ ++ E + AKFSE+ +S+ + L++ P R
Sbjct: 188 GCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQR 247
Query: 678 PSATE 682
E
Sbjct: 248 LGCQE 252
>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 6. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK6
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK6 is widely expressed in many tissues.
t is expressed as multiple splice variants with
different domain architectures. It is
post-translationally palmitoylated and localized in the
membrane. GRK6 plays important roles in the regulation
of dopamine, M3 muscarinic, opioid, and chemokine
receptor signaling. It also plays maladaptive roles in
addiction and Parkinson's disease. GRK6-deficient mice
exhibit altered dopamine receptor regulation, decreased
lymphocyte chemotaxis, and increased acute inflammation
and neutrophil chemotaxis.
Length = 285
Score = 67.7 bits (165), Expect = 4e-12
Identities = 75/303 (24%), Positives = 116/303 (38%), Gaps = 65/303 (21%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKD-KSLPVNDRILREVATLSRLQHQH 441
F + + LG GGFG V C+ + G+ YA KK+ K K L E L ++ +
Sbjct: 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRF 61
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
VV A +ET A ++ G L + A
Sbjct: 62 VVSLAYA-YETKDALCLVLTLMNGGDLKFHIYHMGEAG---------------------- 98
Query: 502 CPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
F++ A +I GL +H + I++RDL P NI D I+I
Sbjct: 99 --------------FEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRIS 144
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSL 621
D GLA + Q + G+VGT Y APE+ + + D ++L
Sbjct: 145 DLGLAVHVPEGQTIK----------------GRVGTVGYMAPEVVKN-ERYTFSPDWWAL 187
Query: 622 GIVFFEL---WHPFST---AMERQIVLSDLKQKGELPPSWVAKFSEQ-ESLLRRLMSPSP 674
G + +E+ PF ++R+ V +K E+ + KFS SL + L+ P
Sbjct: 188 GCLLYEMIAGQSPFQQRKKKIKREEVERLVK---EVQEEYSEKFSPDARSLCKMLLCKDP 244
Query: 675 SDR 677
+R
Sbjct: 245 KER 247
>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase Like 5.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 5 (CDKL5) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. Mutations in the gene encoding CDKL5,
previously called STK9, are associated with early onset
epilepsy and severe mental retardation [X-linked
infantile spasm syndrome (ISSX) or West syndrome]. In
addition, CDKL5 mutations also sometimes cause a
phenotype similar to Rett syndrome (RTT), a progressive
neurodevelopmental disorder. These pathogenic mutations
are located in the N-terminal portion of the protein
within the kinase domain.
Length = 287
Score = 67.7 bits (165), Expect = 5e-12
Identities = 56/250 (22%), Positives = 107/250 (42%), Gaps = 58/250 (23%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
N FE L +G G +G V+ C++K A+KK + +++ V + LRE+ L L+ +
Sbjct: 1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQE 60
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++V +A+ G LY+ E
Sbjct: 61 NIVELKEAFRRRG----------------------------------------KLYLVFE 80
Query: 501 YCPRTLRQVFESYDH--FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
Y + + ++ E + +++ +++ Q+++ + H I+HRD+ P N+ + +
Sbjct: 81 YVEKNMLELLEEMPNGVPPEKVRSYIY-QLIKAIHWCHKNDIVHRDIKPENLLISHNDVL 139
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADM 618
K+ DFG A+ L + G + + T V T +Y +PE+ G P + DM
Sbjct: 140 KLCDFGFARNL--------------SEGSNANYTEYVATRWYRSPELLLGAP-YGKAVDM 184
Query: 619 YSLGIVFFEL 628
+S+G + EL
Sbjct: 185 WSVGCILGEL 194
>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein
Serine/Threonine Kinases, Novel Protein Kinase C theta
and delta. Serine/Threonine Kinases (STKs), Novel
Protein Kinase C (nPKC), theta and delta-like isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The nPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
nPKCs are calcium-independent, but require DAG
(1,2-diacylglycerol) and phosphatidylserine (PS) for
activity. There are four nPKC isoforms, delta, epsilon,
eta, and theta. PKC-theta is selectively expressed in
T-cells and plays an important and non-redundant role in
several aspects of T-cell biology. PKC-delta plays a
role in cell cycle regulation and programmed cell death
in many cell types.
Length = 316
Score = 67.9 bits (166), Expect = 5e-12
Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 27/190 (14%)
Query: 494 YLYIQMEYCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFF 552
+L+ MEY L +S FD+ A +I+ GL +H +GII+RDL +N+
Sbjct: 70 HLFFVMEYLNGGDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLL 129
Query: 553 DARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKI 612
D IKI DFG+ K E ++ + T GT Y APEI +G K
Sbjct: 130 DKDGHIKIADFGMCK----ENMNGEGKAST-----------FCGTPDYIAPEILKG-QKY 173
Query: 613 DEKADMYSLGIVFFELW---HPFSTAMERQIVLSDLKQKGELP--PSWVAKFSEQESLLR 667
+E D +S G++ +E+ PF E ++ S L + P P W++K E + L
Sbjct: 174 NESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILN---DRPHFPRWISK--EAKDCLS 228
Query: 668 RLMSPSPSDR 677
+L P+ R
Sbjct: 229 KLFERDPTKR 238
>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-3 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-3 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-3 shows a
restricted pattern of expression and is present in
brain, kidney, and intestine. It is elevated in
Alzheimer's disease (AD) and has been shown to associate
with paired helical filaments (PHFs) and stimulate Tau
phosphorylation. As AD progresses, phosphorylated Tau
aggregates and forms PHFs, which leads to the formation
of neurofibrillary tangles (NFTs). In human glioma
cells, PCTAIRE-3 induces cell cycle arrest and cell
death.
Length = 288
Score = 67.7 bits (165), Expect = 6e-12
Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 65/254 (25%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLK-DKSLPVNDRILREVATLSRLQ 438
L + +L LG G + V ++KL A+K+IRL+ ++ P +REV+ L L+
Sbjct: 4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCT--AIREVSLLKNLK 61
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H ++V TL + R L +
Sbjct: 62 HANIV-----------------------TLHDIIHTERC-----------------LTLV 81
Query: 499 MEYCPRTLRQVFESYDHFDKELAWHLFR----QIVEGLAHIHGQGIIHRDLTPNNIFFDA 554
EY L+Q D+ ++ H + Q++ GL++ H + I+HRDL P N+ +
Sbjct: 82 FEYLDSDLKQYL---DNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINE 138
Query: 555 RNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDE 614
+ ++K+ DFGLA+ + PT T + +V T +Y P++ G +
Sbjct: 139 KGELKLADFGLAR---------AKSVPTKT------YSNEVVTLWYRPPDVLLGSTEYST 183
Query: 615 KADMYSLGIVFFEL 628
DM+ +G + +E+
Sbjct: 184 PIDMWGVGCILYEM 197
>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
Byr1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Byr1 from
Schizosaccharomyces pombe, FUZ7 from Ustilago maydis,
and related proteins. Byr1 phosphorylates its downstream
target, the MAPK Spk1, and is regulated by the MAPKKK
Byr2. The Spk1 cascade is pheromone-responsive and is
essential for sporulation and sexual differentiation in
fission yeast. FUZ7 phosphorylates and activates its
target, the MAPK Crk1, which is required in mating and
virulence in U. maydis.
Length = 284
Score = 67.5 bits (165), Expect = 6e-12
Identities = 75/319 (23%), Positives = 127/319 (39%), Gaps = 78/319 (24%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
D E + LG G G V K+ G A K + + KS V +ILRE+ + + +
Sbjct: 6 DLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKS-SVRKQILRELQIMHECRSPY 64
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
+V +Y A+ L + + ME+
Sbjct: 65 IVSFYGAF----------------------------------------LNENNICMCMEF 84
Query: 502 CPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHG-QGIIHRDLTPNNIFFDARNDIK 559
+L ++++ E+ + +VEGL +++ I+HRD+ P+NI ++R IK
Sbjct: 85 MDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIK 144
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ--VGTYFYTAPEIEQGWPKIDEKAD 617
+ DFG++ G ++ VGT Y +PE QG K K+D
Sbjct: 145 LCDFGVS-------------------GELINSIADTFVGTSTYMSPERIQG-GKYTVKSD 184
Query: 618 MYSLGIVFFELW---HPFSTAMER------QIVLSDLKQK--GELPPSWVA-KFSEQ-ES 664
++SLGI EL PF+ + + + DL Q+ E PP + F E
Sbjct: 185 VWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRD 244
Query: 665 LLRRLMSPSPSDRPSATEL 683
+ + P++RP+ +L
Sbjct: 245 FVDACLLKDPTERPTPQQL 263
>gnl|CDD|213530 TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a
histidyl-tRNA synthetase in every completed genome.
Apparent second copies from Bacillus subtilis,
Synechocystis sp., and Aquifex aeolicus are slightly
shorter, more closely related to each other than to other
hisS proteins, and actually serve as regulatory subunits
for an enzyme of histidine biosynthesis. They were
excluded from the seed alignment and score much lower
than do single copy histidyl-tRNA synthetases of other
genomes not included in the seed alignment. These
putative second copies of HisS score below the trusted
cutoff. The regulatory protein kinase GCN2 of
Saccharomyces cerevisiae (YDR283c), and related proteins
from other species designated eIF-2 alpha kinase, have a
domain closely related to histidyl-tRNA synthetase that
may serve to detect and respond to uncharged tRNA(his),
an indicator of amino acid starvation; these regulatory
proteins are not orthologous and so score below the noise
cutoff [Protein synthesis, tRNA aminoacylation].
Length = 397
Score = 68.6 bits (169), Expect = 6e-12
Identities = 94/452 (20%), Positives = 157/452 (34%), Gaps = 106/452 (23%)
Query: 751 DTELRDYVVQVTKEMFRQHCAKHLEIE-PMYLLGDCPQFKRNT------VK-----LLTH 798
+ Y+ + +E+F + K EI P+ F R V+
Sbjct: 13 EMIKWQYIEETIREVFELYGFK--EIRTPI--FEYTELFARKVGEETDIVEKEMYTFKDK 68
Query: 799 GGDLLELSHELRLPFIRWAISN---QKSSFKRYEISSVYRRAIGHSPP--NRY---LQGD 850
GG L L E P R I N FK Y I ++R + P RY Q
Sbjct: 69 GGRSLTLRPEGTAPVARAVIENKLLLPKPFKLYYIGPMFR----YERPQKGRYRQFHQFG 124
Query: 851 FDIIGGASALTEAEVLKVTMDIVTRFFHAESCDIHLNHGDLLEAIWSWAGIKAEHREKVA 910
++IG S L +AE++ + +I+ + + +N +LE E+RE +
Sbjct: 125 VEVIGSDSPLADAEIIALAAEILKA-LGIKDFTLEINSLGILEGR-------LEYREALL 176
Query: 911 ELLAMMGSLRPQSSEWKSKWVVIRRQLLQELNLAEAVVNRLQTVGLRF--CGA-ADQAL- 966
L + L +L E V RL+ LR Q L
Sbjct: 177 RYL---------------------DKHLDKLG--EDSVRRLEKNPLRILDSKNEKIQELL 213
Query: 967 ---PRLRGALPADKPTRKALDELYLRIWRIEKNIYIDALMPPIE---------SYHRNLF 1014
P++ L + +R +EL +DAL P Y+
Sbjct: 214 KEAPKILDFLDEE--SRAHFEELKE---------LLDALGIPYVIDPSLVRGLDYYTGTV 262
Query: 1015 FQVFSVKEKYPATLVEGTLLAVGGRYDYLLHRMWDREYVGYASRTNPP-SGVGASLALET 1073
F+ + + A +G++ GGRYD L+ + PP VG ++ +E
Sbjct: 263 FEFVT--DGLGA---QGSICG-GGRYDGLVEEL-----------GGPPTPAVGFAIGIER 305
Query: 1074 IIQHYPVDFKPVRNEAGTSVLVCSRGGGGLLVERMELVAELWEENIKAQFVPVPDPSLTE 1133
++ E+ V V G L E ++L +L + I+ + L +
Sbjct: 306 LLLLLEELGLLPPEESSPDVYVVPLGEEAEL-EALKLAQKLRKAGIRVEVDLGGR-KLKK 363
Query: 1134 QYEYASEHDIKCLVILTDTGAQKGLVKVRHLD 1165
Q +YA + + VI+ + G V ++ L
Sbjct: 364 QLKYADKLGARFAVIIGEDELANGTVTLKDLR 395
>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 1.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 1 (TAO1) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO1 is sometimes referred to as prostate-derived
sterile 20-like kinase 2 (PSK2). TAO1 activates the p38
MAPK through direct interaction with and activation of
MEK3. TAO1 is highly expressed in the brain and may play
a role in neuronal apoptosis. TAO1 interacts with the
checkpoint proteins BubR1 and Mad2, and plays an
important role in regulating mitotic progression, which
is required for both chromosome congression and
checkpoint-induced anaphase delay. TAO1 may play a role
in protecting genomic stability.
Length = 317
Score = 67.8 bits (165), Expect = 7e-12
Identities = 80/331 (24%), Positives = 131/331 (39%), Gaps = 73/331 (22%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDK-SLPVNDRILREVATLSRLQHQH 441
F +L+ +GHG FG V ++ A+KK+ K S I++EV L R++H +
Sbjct: 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPN 86
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
+ Y + A ++ MEY
Sbjct: 87 SIEYKGCYLREHTA----------------------------------------WLVMEY 106
Query: 502 CPRTLRQVFESYDHFDKELAWHLFRQ-IVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKI 560
C + + E + +E+ ++GLA++H +IHRD+ NI +K+
Sbjct: 107 CLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKL 166
Query: 561 GDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI----EQGWPKIDEKA 616
DFG A A P ++ VGT ++ APE+ ++G + D K
Sbjct: 167 ADFGSASI----------ASPANSF---------VGTPYWMAPEVILAMDEG--QYDGKV 205
Query: 617 DMYSLGIVFFELWH--PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQ-ESLLRRLMSPS 673
D++SLGI EL P M L + Q E P ++S+ + + +
Sbjct: 206 DVWSLGITCIELAERKPPLFNMNAMSALYHIAQN-ESPTLQSNEWSDYFRNFVDSCLQKI 264
Query: 674 PSDRPSATELLQD--ALPPQMEYELLDNILR 702
P DRP++ ELL+ L + E L+D I R
Sbjct: 265 PQDRPTSEELLKHMFVLRERPETVLIDLIQR 295
>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase C. Serine/Threonine Kinases
(STKs), Protein Kinase C (PKC) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, classical PKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. Novel PKCs are
calcium-independent, but require DAG and PS for
activity, while atypical PKCs only require PS. PKCs
phosphorylate and modify the activities of a wide
variety of cellular proteins including receptors,
enzymes, cytoskeletal proteins, transcription factors,
and other kinases. They play a central role in signal
transduction pathways that regulate cell migration and
polarity, proliferation, differentiation, and apoptosis.
Also included in this subfamily are the PKC-like
proteins, called PKNs.
Length = 318
Score = 67.4 bits (165), Expect = 9e-12
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 23/187 (12%)
Query: 495 LYIQMEYCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD 553
L+ MEY L + FD+ A +IV GL +H +GII+RDL +N+ D
Sbjct: 71 LFFVMEYVNGGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLD 130
Query: 554 ARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKID 613
+ IKI DFG+ K E + GGV+ + GT Y APEI P
Sbjct: 131 SEGHIKIADFGMCK----EGI---------LGGVTT--STFCGTPDYIAPEILSYQP-YG 174
Query: 614 EKADMYSLGIVFFELW---HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLM 670
D ++LG++ +E+ PF E + + + + P W++K E +S+L+ +
Sbjct: 175 PAVDWWALGVLLYEMLAGQSPFEGDDEDE-LFQSILEDEVRYPRWLSK--EAKSILKSFL 231
Query: 671 SPSPSDR 677
+ +P R
Sbjct: 232 TKNPEKR 238
>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 2.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 2 (TAO2) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Human TAO2 is also known as prostate-derived Ste20-like
kinase (PSK) and was identified in a screen for
overexpressed RNAs in prostate cancer. TAO2 activates
both p38 and c-Jun N-terminal kinase (JNK), by
phosphorylating and activating the respective MAP/ERK
kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6
and MKK4/MKK7. TAO2 contains a long C-terminal extension
with autoinhibitory segments. It is activated by the
release of this inhibition and the phosphorylation of
its activation loop serine. TAO2 functions as a
regulator of actin cytoskeletal and microtubule
organization. In addition, it regulates the transforming
growth factor-activated kinase 1 (TAK1), which is a
MAPKKK that plays an essential role in the signaling
pathways of tumor necrosis factor (TNF), interleukin 1
(IL-1), and Toll-like receptor (TLR).
Length = 308
Score = 67.0 bits (163), Expect = 1e-11
Identities = 74/314 (23%), Positives = 125/314 (39%), Gaps = 75/314 (23%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDR---ILREVATLSRLQH 439
F +L+ +GHG FG V ++ + A+KK+ K N++ I++EV L +L+H
Sbjct: 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQ--SNEKWQDIIKEVRFLQKLRH 74
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
+ ++Y + A ++ M
Sbjct: 75 PNTIQYRGCYLREHTA----------------------------------------WLVM 94
Query: 500 EYCPRTLRQVFESYDHFDKELAWHLFRQ-IVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
EYC + + E + +E+ ++GLA++H +IHRD+ NI +
Sbjct: 95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLV 154
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI----EQGWPKIDE 614
K+GDFG A + P + VGT ++ APE+ ++G + D
Sbjct: 155 KLGDFGSASIMA----------PANXF---------VGTPYWMAPEVILAMDEG--QYDG 193
Query: 615 KADMYSLGIVFFELWH--PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQ-ESLLRRLMS 671
K D++SLGI EL P M L + Q E P +SE + + +
Sbjct: 194 KVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQN-ESPALQSGHWSEYFRNFVDSCLQ 252
Query: 672 PSPSDRPSATELLQ 685
P DRP++ LL+
Sbjct: 253 KIPQDRPTSEVLLK 266
>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 2. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK2,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK2 and MSK1 play nonredundant
roles in activating histone H3 kinases, which play
pivotal roles in compaction of the chromatin fiber. MSK2
is the required H3 kinase in response to stress stimuli
and activation of the p38 MAPK pathway. MSK2 also plays
a role in the pathogenesis of psoriasis.
Length = 332
Score = 66.9 bits (163), Expect = 1e-11
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 514 DHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQ 573
D+F ++ +I+ L H+H GI++RD+ NI D+ + + DFGL+K E+
Sbjct: 100 DNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEE 159
Query: 574 LDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELW---H 630
++ +F GT Y APEI +G + D +SLGI+ FEL
Sbjct: 160 KERTYSF--------------CGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGAS 205
Query: 631 PFSTAMERQIVLSDLKQKGELPPSWVAKFS-EQESLLRRLMSPSPSDRPSA 680
PF+ ER ++ + P + + E + LL +L+ P R A
Sbjct: 206 PFTLEGERNTQSEVSRRILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGA 256
>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-1 is
widely expressed except in the spleen and thymus. It is
highly expressed in the brain, heart, pancreas, testis,
and ovary, and is localized in the cytoplasm. It is
regulated by cyclin D3 and is inhibited by the p21 cell
cycle inhibitor. It has also been shown to interact with
the membrane-associated cyclin Y, which recruits the
protein to the plasma membrane.
Length = 303
Score = 66.3 bits (161), Expect = 2e-11
Identities = 59/252 (23%), Positives = 110/252 (43%), Gaps = 63/252 (25%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKS-LPVNDRILREVATLSRLQH 439
+ +E+L+ LG G + V K+K++G+ A+K IRL+++ P +RE + L L+H
Sbjct: 5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFT--AIREASLLKGLKH 62
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
++V + D+ + L + Y+
Sbjct: 63 ANIVLLH-----------------------------------DIIHTKETLTLVFEYVHT 87
Query: 500 EYCPRTLRQVFESYD---HFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
+ C Q + + H + + LF Q++ GL++IH + I+HRDL P N+
Sbjct: 88 DLC-----QYMDKHPGGLHPEN-VKLFLF-QLLRGLSYIHQRYILHRDLKPQNLLISDTG 140
Query: 557 DIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKA 616
++K+ DFGLA+ + P+ T + +V T +Y P++ G +
Sbjct: 141 ELKLADFGLAR---------AKSVPSHT------YSNEVVTLWYRPPDVLLGSTEYSTCL 185
Query: 617 DMYSLGIVFFEL 628
DM+ +G +F E+
Sbjct: 186 DMWGVGCIFVEM 197
>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK
kinase (MEK) subfamily, catalytic (c) domain. PKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine or tyrosine residues on protein
substrates. The MEK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1
and MEK2 are dual-specificity PKs that phosphorylate and
activate the downstream targets, ERK(extracellular
signal-regulated kinase) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1/2, and finally to ERK1/2. The ERK
cascade plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. This cascade has also been
implicated in synaptic plasticity, migration,
morphological determination, and stress response
immunological reactions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1/2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 308
Score = 65.9 bits (161), Expect = 2e-11
Identities = 79/327 (24%), Positives = 129/327 (39%), Gaps = 90/327 (27%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
DFE+L LG G G V ++ G A K I L+ K + ++I+RE+ L +
Sbjct: 2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKP-AIRNQIIRELKVLHECNSPY 60
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
+V +Y A++ DG+ + I ME+
Sbjct: 61 IVGFYGAFYS------DGE----------------------------------ISICMEH 80
Query: 502 CPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQ-GIIHRDLTPNNIFFDARNDIK 559
+L QV + + + + ++ GL ++ + I+HRD+ P+NI ++R +IK
Sbjct: 81 MDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIK 140
Query: 560 IGDFGLAKFLKLEQLDQDA-AFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADM 618
+ DFG++ L +D A +F VGT Y +PE QG ++D+
Sbjct: 141 LCDFGVSGQL----IDSMANSF--------------VGTRSYMSPERLQG-THYTVQSDI 181
Query: 619 YSLGIVFFELWH-----PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPS 673
+SLG+ E+ P A E + + +GE S R +S
Sbjct: 182 WSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKES------------HRPVSGH 229
Query: 674 PSDRPSATELLQDALPPQMEYELLDNI 700
P D P P +ELLD I
Sbjct: 230 PPDSP----------RPMAIFELLDYI 246
>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase,
MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine
Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MOK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MOK, also called Renal tumor antigen 1
(RAGE-1), is widely expressed and is enriched in testis,
kidney, lung, and brain. It is expressed in
approximately 50% of renal cell carcinomas (RCC) and is
a potential target for immunotherapy. MOK is stabilized
by its association with the HSP90 molecular chaperone.
It is induced by the transcription factor Cdx2 and may
be involved in regulating intestinal epithelial
development and differentiation.
Length = 282
Score = 65.4 bits (160), Expect = 3e-11
Identities = 75/332 (22%), Positives = 130/332 (39%), Gaps = 95/332 (28%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLP-VNDRILREVATLSRLQ-HQHVVRYY 446
+G G F V+ +++ G++YA+K ++ KSL VN+ LRE+ L RL H +++R
Sbjct: 7 IGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNN--LREIQALRRLSPHPNILRLI 64
Query: 447 QAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPRTL 506
+ F D G L E + Y I +
Sbjct: 65 EVLF---------DRKTGRLALVF----------------ELMDMNLYELI------KGR 93
Query: 507 RQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLA 566
++ ++ Q+++ L H+H GI HRD+ P NI + +K+ DFG
Sbjct: 94 KR------PLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSC 146
Query: 567 KFLKLEQLDQDAAFPTDTGGVSVDG--TGQVGTYFYTAPE--IEQGWPKIDEKADMYSLG 622
+ G+ T + T +Y APE + G+ K D++++G
Sbjct: 147 R------------------GIYSKPPYTEYISTRWYRAPECLLTDGY--YGPKMDIWAVG 186
Query: 623 IVFFEL--WHP-FSTAME-RQI-------------VLSDLKQKGEL-------PPSWVAK 658
VFFE+ P F E QI VL ++ + + + K
Sbjct: 187 CVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRK 246
Query: 659 F-----SEQESLLRRLMSPSPSDRPSATELLQ 685
+E LL++L++ P +R +A + L+
Sbjct: 247 LLPNASAEGLDLLKKLLAYDPDERITAKQALR 278
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 67.8 bits (165), Expect = 3e-11
Identities = 68/260 (26%), Positives = 121/260 (46%), Gaps = 37/260 (14%)
Query: 452 TGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPRTLRQVFE 511
+GV++F D GS +L+ + R+ + G + L+ + +E +LRQ +
Sbjct: 16 SGVSEFCTD---GSKSLSHIDYV-RSLLGSHKEGNLDGLDDDSIVRALECEDVSLRQWLD 71
Query: 512 SYDH-FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTP--------NNIFF---------- 552
+ D D +H+FRQIVE + H QGI+ ++ P N++ F
Sbjct: 72 NPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSG 131
Query: 553 -DARNDIKIGDFGLAKF------LKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI 605
D K + G ++ ++E+L++ P + + +YT+PE
Sbjct: 132 SDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILA-----MEMSWYTSPEE 186
Query: 606 EQGWPKIDEKADMYSLGIVFFELWHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESL 665
+ G + +D+Y LG++ FEL+ P S+ E+ +S L+ + LPP + + ++ S
Sbjct: 187 DNG-SSSNCASDVYRLGVLLFELFCPVSSREEKSRTMSSLRHR-VLPPQILLNWPKEASF 244
Query: 666 LRRLMSPSPSDRPSATELLQ 685
L+ P PS RPS +ELLQ
Sbjct: 245 CLWLLHPEPSCRPSMSELLQ 264
>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 1. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK1
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK1, also called rhodopsin kinase,
belongs to the visual group of GRKs and is expressed in
retinal cells. It phosphorylates rhodopsin in rod cells,
which leads to termination of the phototransduction
cascade. Mutations in GRK1 are associated to a
recessively inherited form of stationary nightblindness
called Oguchi disease.
Length = 280
Score = 65.3 bits (159), Expect = 3e-11
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 516 FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLD 575
F + A QI+ GL H+H + II+RDL P N+ D +++I D GLA LK Q
Sbjct: 94 FPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQ-- 151
Query: 576 QDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWH---PF 632
+ T G + GT + APE+ QG + D D ++LG+ +E+ PF
Sbjct: 152 ------SKTKGYA-------GTPGFMAPELLQG-EEYDFSVDYFALGVTLYEMIAARGPF 197
Query: 633 STAMERQIVLSDLKQKG-ELPPSWVAKFSEQ-ESLLRRLMSPSPSDR 677
E+ + +LKQ+ ++ KFS +S L++ P R
Sbjct: 198 RARGEK-VENKELKQRILNDSVTYPDKFSPASKSFCEALLAKDPEKR 243
Score = 35.2 bits (81), Expect = 0.18
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKI---RLKDK----SLPVNDRILREV 431
LG GGFG V C+ + G+ YA KK+ RLK + V RIL +V
Sbjct: 1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKV 50
>gnl|CDD|238436 cd00859, HisRS_anticodon, HisRS Histidyl-anticodon binding domain.
HisRS belongs to class II aminoacyl-tRNA synthetases
(aaRS). This alignment contains the anticodon binding
domain, which is responsible for specificity in
tRNA-binding, so that the activated amino acid is
transferred to a ribose 3' OH group of the appropriate
tRNA only.
Length = 91
Score = 59.9 bits (146), Expect = 4e-11
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 1090 GTSVLVCSRGGGGLLVERMELVAELWEENIKAQFVPVPDPSLTEQYEYASEHDIKCLVIL 1149
V V G G L E +EL +L + IKA+ L +Q++YA + VIL
Sbjct: 1 EVDVYVVPLGEG-ALSEALELAEQLRDAGIKAEIDYG-GRKLKKQFKYADRSGARFAVIL 58
Query: 1150 TDTGAQKGLVKVRHLDVKKEKEVQRESLVRFL 1181
+ G+V V+ L+ +++ V + LV L
Sbjct: 59 GEDELAAGVVTVKDLETGEQETVALDELVEEL 90
>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR2 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. In
addition, NDR2 plays a role in regulating neuronal
growth and differentiation, as well as in facilitating
neurite outgrowth. It is also implicated in fear
conditioning as it contributes to the coupling of
neuronal morphological changes with fear-memory
consolidation. NDR2 is also referred to as STK38-like.
Length = 360
Score = 65.8 bits (160), Expect = 5e-11
Identities = 77/315 (24%), Positives = 119/315 (37%), Gaps = 70/315 (22%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
+DFE L+ +G G FG V L + K G YA+K ILR+ L + Q
Sbjct: 1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMK--------------ILRKADMLEKEQVA 46
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
H+ E D W S F ++ LY+ ME
Sbjct: 47 HIRAERDILVE-------ADGAWVVKMFYS--FQDKRN----------------LYLIME 81
Query: 501 YCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIK 559
+ P + + D +E + V + IH G IHRD+ P+N+ DA+ +K
Sbjct: 82 FLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVK 141
Query: 560 IGDFGLAKFLKLEQLDQ-----------DAAFPTDTGGVSVD---------GTGQVGTYF 599
+ DFGL LK + D +F + VGT
Sbjct: 142 LSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPD 201
Query: 600 YTAPEI--EQGWPKIDEKADMYSLGIVFFEL---WHPF--STAMERQIVLSDLKQKGELP 652
Y APE+ + G+ K+ D +SLG++ +E+ + PF T E + + K+ P
Sbjct: 202 YIAPEVFMQTGYNKL---CDWWSLGVIMYEMLIGYPPFCSETPQETYRKVMNWKETLVFP 258
Query: 653 PSWVAKFSEQESLLR 667
P ++ +LR
Sbjct: 259 PEVPISEKAKDLILR 273
>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Citron Rho-interacting kinase.
Serine/Threonine Kinases (STKs), Citron Rho-interacting
kinase (CRIK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The CRIK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CRIK is also called citron kinase. It contains
a catalytic domain, a central coiled-coil domain, and a
C-terminal region containing a Rho-binding domain (RBD),
a zinc finger, and a pleckstrin homology (PH) domain, in
addition to other motifs. CRIK, an effector of the small
GTPase Rho, plays an important function during
cytokinesis and affects its contractile process.
CRIK-deficient mice show severe ataxia and epilepsy as a
result of abnormal cytokinesis and massive apoptosis in
neuronal precursors. A Down syndrome critical region
protein TTC3 interacts with CRIK and inhibits
CRIK-dependent neuronal differentiation and neurite
extension.
Length = 330
Score = 65.2 bits (159), Expect = 5e-11
Identities = 64/263 (24%), Positives = 102/263 (38%), Gaps = 63/263 (23%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
DF+ +G G FG V + + K G YA+K + K L L +
Sbjct: 1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVM--KKSVL---------------LAQE 43
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
V + + + D + S ++ Q+ LY+ ME
Sbjct: 44 TVSFFEE----------ERDIL--------SISNSPWIPQLQYAFQDKD----NLYLVME 81
Query: 501 YCPR-TLRQVFESY-DHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
Y P L + Y D FD+++A ++V + +H G +HRD+ P N+ D I
Sbjct: 82 YQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHI 141
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQ---GWPK--ID 613
K+ DFG A +L + V+ VGT Y APE+ G K
Sbjct: 142 KLADFGSAA-----RLTANK---------MVNSKLPVGTPDYIAPEVLTTMNGDGKGTYG 187
Query: 614 EKADMYSLGIVFFELWH---PFS 633
+ D +SLG++ +E+ + PF
Sbjct: 188 VECDWWSLGVIAYEMIYGRSPFH 210
>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 5.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 5, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK5 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK5 is mainly expressed in the brain. It
is not required for viability, but together with PAK6,
it is required for normal levels of locomotion and
activity, and for learning and memory. PAK5 cooperates
with Inca (induced in neural crest by AP2) in the
regulation of cell adhesion and cytoskeletal
organization in the embryo and in neural crest cells
during craniofacial development. PAK5 may also play a
role in controlling the signaling of Raf-1, an effector
of Ras, at the mitochondria.
Length = 292
Score = 64.7 bits (157), Expect = 6e-11
Identities = 76/335 (22%), Positives = 129/335 (38%), Gaps = 77/335 (22%)
Query: 365 VDSGSPNMSLPSSRYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVN 424
V G P YL+ F ++ G G G V + K G+ AVKK+ L+ +
Sbjct: 15 VSPGDPR------EYLDSFIKI---GEGSTGIVCIATEKHTGKQVAVKKMDLRKQQR--R 63
Query: 425 DRILREVATLSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVT 484
+ + EV + H++VV Y ++ GD +W
Sbjct: 64 ELLFNEVVIMRDYHHENVVDMYNSYLV-------GDELW--------------------- 95
Query: 485 GQENKLESTYLYIQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRD 544
+ ME+ ++ ++E + ++ L+++H QG+IHRD
Sbjct: 96 ------------VVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRD 143
Query: 545 LTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE 604
+ ++I + IK+ DFG + E + + VGT ++ APE
Sbjct: 144 IKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSL---------------VGTPYWMAPE 188
Query: 605 IEQGWPKIDEKADMYSLGIVFFELWHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQES 664
+ P E D++SLGI+ E+ + + + + LPP V + S
Sbjct: 189 VISRLPYGTE-VDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPPR-VKDSHKVSS 246
Query: 665 LLRR----LMSPSPSDRPSATELLQD-----ALPP 690
+LR ++ PS R +A ELLQ A PP
Sbjct: 247 VLRGFLDLMLVREPSQRATAQELLQHPFLKLAGPP 281
>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 3.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 3 (TAO3) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO3 is also known as JIK (JNK inhibitory kinase) or KFC
(kinase from chicken). It specifically activates c-Jun
N-terminal kinase (JNK), presumably by phosphorylating
and activating MKK4/MKK7. In Saccharomyces cerevisiae,
TAO3 is a component of the RAM (regulation of Ace2p
activity and cellular morphogenesis) signaling pathway.
TAO3 is upregulated in retinal ganglion cells after
axotomy, and may play a role in apoptosis.
Length = 313
Score = 64.7 bits (157), Expect = 6e-11
Identities = 74/317 (23%), Positives = 117/317 (36%), Gaps = 81/317 (25%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDR---ILREVATLSRLQH 439
F L +GHG FG V N AVKK+ K N++ I++EV L +L+H
Sbjct: 23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQT--NEKWQDIIKEVKFLQQLKH 80
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
+ + Y + + A ++ M
Sbjct: 81 PNTIEYKGCYLKEHTA----------------------------------------WLVM 100
Query: 500 EYCPRTLRQVFESYDHFDKELAWHLFRQ-IVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
EYC + + E + +E+ ++GLA++H +IHRD+ NI +
Sbjct: 101 EYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQV 160
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI----EQGWPKIDE 614
K+ DFG A S VGT ++ APE+ ++G + D
Sbjct: 161 KLADFGSAS-------------------KSSPANSFVGTPYWMAPEVILAMDEG--QYDG 199
Query: 615 KADMYSLGIVFFELWH--PFSTAMERQIVLSDLKQKGELPP----SWVAKFSEQESLLRR 668
K D++SLGI EL P M L + Q + P W F +
Sbjct: 200 KVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQN-DSPTLQSNEWTDSF---RGFVDY 255
Query: 669 LMSPSPSDRPSATELLQ 685
+ P +RP++ ELL+
Sbjct: 256 CLQKIPQERPASAELLR 272
>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 3. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. MAP4K3 is required in the
activation of S6 kinase by amino acids and for the
phosphorylation of the mTOR-regulated inhibitor of
eukaryotic initiation factor 4E. mTOR regulates ribosome
biogenesis and protein translation, and is frequently
deregulated in cancer.
Length = 267
Score = 64.3 bits (156), Expect = 6e-11
Identities = 66/314 (21%), Positives = 128/314 (40%), Gaps = 69/314 (21%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVND--RILREVATLSRLQH 439
DFE +Q +G G +G V +N G A+K I+L+ P D + +E+ + +H
Sbjct: 10 DFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLE----PGEDFAVVQQEIIMMKDCKH 65
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
++V Y+ ++ D +W I M
Sbjct: 66 SNIVAYFGSYLRR-------DKLW---------------------------------ICM 85
Query: 500 EYC-PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
E+C +L+ ++ + ++ R+ ++GL ++H +G +HRD+ NI +
Sbjct: 86 EFCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHV 145
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPK--IDEKA 616
K+ DFG++ + + + +F +GT ++ APE+ K ++
Sbjct: 146 KLADFGVSAQIT-ATIAKRKSF--------------IGTPYWMAPEVAAVERKGGYNQLC 190
Query: 617 DMYSLGIVFFEL--WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQES---LLRRLMS 671
D++++GI EL P + L + + PP K S ++ ++
Sbjct: 191 DIWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALT 250
Query: 672 PSPSDRPSATELLQ 685
+P RP+A +LLQ
Sbjct: 251 KNPKKRPTAEKLLQ 264
>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine
Kinase, Activated Cdc42-associated kinase. Protein
Tyrosine Kinase (PTK) family; Activated Cdc42-associated
kinase (Ack) subfamily; catalytic (c) domain. Ack
subfamily members include Ack1, thirty-eight-negative
kinase 1 (Tnk1), and similar proteins. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ack
subfamily members are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal catalytic domain, an
SH3 domain, a Cdc42-binding CRIB domain, and a
proline-rich region. They are mainly expressed in brain
and skeletal tissues and are involved in the regulation
of cell adhesion and growth, receptor degradation, and
axonal guidance. Ack1 is also associated with
androgen-independent prostate cancer progression. Tnk1
regulates TNFalpha signaling and may play an important
role in cell death.
Length = 257
Score = 63.9 bits (156), Expect = 6e-11
Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 49/168 (29%)
Query: 410 AVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLA 469
AVK ++ DK + D L+E A + L H++++R Y GV
Sbjct: 27 AVKCLK-SDKLSDIMDDFLKEAAIMHSLDHENLIRLY------GVV-------------- 65
Query: 470 SSTFSNRAASSADVTGQENKLESTYLYIQMEYCPR-----TLRQVFESYDHFDKELAWHL 524
VT E P LR+ ++ HF
Sbjct: 66 ------LTHPLMMVT---------------ELAPLGSLLDRLRK--DALGHFLISTLCDY 102
Query: 525 FRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLE 572
QI G+ ++ + IHRDL NI + + +KIGDFGL + L
Sbjct: 103 AVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQN 150
>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src
kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; C-terminal Src kinase (Csk)
subfamily; catalytic (c) domain. The Csk subfamily is
composed of Csk, Chk, and similar proteins. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk and Chk are translocated to the membrane via binding
to specific transmembrane proteins, G-proteins, or
adaptor proteins near the membrane. Csk catalyzes the
tyr phosphorylation of the regulatory C-terminal tail of
Src kinases, resulting in their inactivation. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As negative regulators of Src
kinases, Csk and Chk play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression.
Length = 256
Score = 64.0 bits (156), Expect = 6e-11
Identities = 62/265 (23%), Positives = 94/265 (35%), Gaps = 86/265 (32%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQH 439
+ + +G G FG V+L G+ AVK LKD S L E + ++ L+H
Sbjct: 5 SKELKLGATIGKGEFGDVML--GDYRGQKVAVKC--LKDDSTAA-QAFLAEASVMTTLRH 59
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
++V+ GV G+ LYI
Sbjct: 60 PNLVQL------LGVV-LQGNP---------------------------------LYIVT 79
Query: 500 EYCP--------RTL-RQVFESYDHFDKELAWHLF-RQIVEGLAHIHGQGIIHRDLTPNN 549
EY R+ R V F + EG+ ++ + +HRDL N
Sbjct: 80 EYMAKGSLVDYLRSRGRAVITLAQQ-------LGFALDVCEGMEYLEEKNFVHRDLAARN 132
Query: 550 IFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE-IEQG 608
+ K+ DFGLAK Q D+G + V +TAPE + +
Sbjct: 133 VLVSEDLVAKVSDFGLAKEASQGQ---------DSGKLPVK---------WTAPEALREK 174
Query: 609 WPKIDEKADMYSLGIVFFELWHPFS 633
K K+D++S GI+ LW +S
Sbjct: 175 --KFSTKSDVWSFGIL---LWEIYS 194
>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled
Receptor Kinase 4-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK4-like group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. Members of the
GRK4-like group include GRK4, GRK5, GRK6, and similar
GRKs. GRKs in this group contain an N-terminal RGS
homology (RH) domain and a catalytic domain, but lack a
G protein betagamma-subunit binding domain. They are
localized to the plasma membrane through
post-translational lipid modification or direct binding
to PIP2.
Length = 285
Score = 64.5 bits (157), Expect = 6e-11
Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 516 FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLD 575
FD+E A +I GL +H + I++RDL P NI D I+I D GLA + +
Sbjct: 99 FDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETI 158
Query: 576 QDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWH---PF 632
+ G+VGT Y APE+ + + D + LG + +E+ PF
Sbjct: 159 R----------------GRVGTVGYMAPEVVKN-ERYTFSPDWWGLGCLIYEMIEGKSPF 201
Query: 633 STAME---RQIVLSDLKQKGELPPSWVAKFSEQ-ESLLRRLMSPSPSDR 677
E R+ V +K E + KFSE S+ R+L++ P R
Sbjct: 202 RQRKEKVKREEVERRVK---EDQEEYSEKFSEAARSICRQLLTKDPGFR 247
Score = 37.9 bits (88), Expect = 0.025
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKI------RLKDKSLPVNDRILREVATLSR 436
F + LG GGFG V C+ + G+ YA KK+ + K +++ +N++ + L +
Sbjct: 2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQI-----LEK 56
Query: 437 LQHQHVVRYYQAWFET 452
+ + VV A +ET
Sbjct: 57 VNSRFVVSLAYA-YET 71
>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 3. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK3
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK3 (also known as beta-adrenergic
receptor kinase 2) is widely expressed in many tissues.
GRK3-deficient mice show a lack of olfactory receptor
desensitization and altered regulation of the M2
muscarinic airway. GRK3 is involved in modulating the
cholinergic response of airway smooth muscles. It also
plays a role in dopamine receptor regulation. GRK3
promoter polymorphisms may be associated with bipolar
disorder.
Length = 279
Score = 64.3 bits (156), Expect = 7e-11
Identities = 51/157 (32%), Positives = 70/157 (44%), Gaps = 26/157 (16%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
+I+ GL H+H + +++RDL P NI D ++I D GLA D P
Sbjct: 105 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA-------CDFSKKKP----- 152
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWH---PF---STAMERQI 640
VGT+ Y APE+ Q D AD +SLG + F+L PF T + +I
Sbjct: 153 -----HASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEI 207
Query: 641 VLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
L ELP S+ E +SLL L+ S R
Sbjct: 208 DRMTLTVNVELPDSFS---PELKSLLEGLLQRDVSKR 241
Score = 33.1 bits (75), Expect = 0.82
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAV-----KKIRLKD-KSLPVNDRIL 428
+G GGFG V C+ G+ YA+ K+I++K ++L +N+RI+
Sbjct: 2 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIM 47
>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy
protein kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Myotonic Dystrophy
protein kinase (DMPK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The DMPK-like subfamily is composed of DMPK
and DMPK-related cell division control protein 42
(Cdc42) binding kinase (MRCK). Three isoforms of MRCK
are known, named alpha, beta and gamma. The DMPK gene is
implicated in myotonic dystrophy 1 (DM1), an inherited
multisystemic disorder with symptoms that include muscle
hyperexcitability, progressive muscle weakness and
wasting, cataract development, testicular atrophy, and
cardiac conduction defects. The genetic basis for DM1 is
the mutational expansion of a CTG repeat in the 3'-UTR
of DMPK. DMPK is expressed in skeletal and cardiac
muscles, and in central nervous tissues. The functional
role of DMPK is not fully understood. It may play a role
in the signal transduction and homeostasis of calcium.
MRCK is activated via interaction with the small GTPase
Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent
cell motility. MRCKgamma is expressed in heart and
skeletal muscles, unlike MRCKalpha and MRCKbeta, which
are expressed ubiquitously.
Length = 331
Score = 64.4 bits (157), Expect = 1e-10
Identities = 79/308 (25%), Positives = 124/308 (40%), Gaps = 72/308 (23%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
+DFE L+ +G G FG V + K K G+ YA+K IL + L R +
Sbjct: 1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMK--------------ILNKWEMLKRAE-- 44
Query: 441 HVVRYYQAWF--ETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
A F E V GD W ++ Q+ LY+
Sbjct: 45 ------TACFREERDVLVN-GDRRW--------------ITNLHYAFQDEN----NLYLV 79
Query: 499 MEYCP----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDA 554
M+Y TL FE D +++A ++V + +H G +HRD+ P+N+ D
Sbjct: 80 MDYYVGGDLLTLLSKFE--DRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDK 137
Query: 555 RNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI----EQGWP 610
I++ DFG L+L G +V VGT Y +PEI E G
Sbjct: 138 NGHIRLADFG--SCLRL-----------LADG-TVQSNVAVGTPDYISPEILQAMEDGKG 183
Query: 611 KIDEKADMYSLGIVFFELWH---PF--STAMERQIVLSDLKQKGELPPSWVAKFSEQESL 665
+ + D +SLG+ +E+ + PF + +E + + K+ + PP E + L
Sbjct: 184 RYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEEAKDL 243
Query: 666 LRRLMSPS 673
+RRL+
Sbjct: 244 IRRLICSP 251
>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAST kinases contain an
N-terminal domain of unknown function, a central
catalytic domain, and a C-terminal PDZ domain that
mediates protein-protein interactions. There are four
mammalian MAST kinases, named MAST1-MAST4. MAST1 is also
referred to as syntrophin-associated STK (SAST), while
MAST2 is also called MAST205. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. MAST1, MAST2, and MAST3 bind and
phosphorylate the tumor suppressor PTEN, and may
contribute to the regulation and stabilization of PTEN.
MAST2 is involved in the regulation of the Fc-gamma
receptor of the innate immune response in macrophages,
and may also be involved in the regulation of the Na+/H+
exchanger NHE3.
Length = 305
Score = 64.0 bits (156), Expect = 1e-10
Identities = 89/367 (24%), Positives = 147/367 (40%), Gaps = 95/367 (25%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
DFE ++ + +G +G V L ++K + +A+KKI + ILR Q Q
Sbjct: 1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKIN-------KQNLILRN-------QIQ 46
Query: 441 HVVRYYQAWFETGVADFDGD----SMWGSGTLASSTFSNRAASSADVTGQENKLESTYLY 496
Q + E + F + SM+ S F + +L
Sbjct: 47 ------QVFVERDILTFAENPFVVSMFCS-------FETK----------------RHLC 77
Query: 497 IQMEY-----CPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIF 551
+ MEY C L+ + ++A F + V L ++H GI+HRDL P+N+
Sbjct: 78 MVMEYVEGGDCATLLKNI----GALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLL 133
Query: 552 FDARNDIKIGDFGLAKF--------LKLEQLDQDAAFPTDTGGVSVDGTGQV-GTYFYTA 602
+ IK+ DFGL+K L +++D D QV GT Y A
Sbjct: 134 ITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDK---------QVCGTPEYIA 184
Query: 603 PEI--EQGWPKIDEKADMYSLGIVFFELW---HPFSTAMERQIVLSDLKQKGELPPSWVA 657
PE+ QG+ K D +++GI+ +E PF ++ + E P A
Sbjct: 185 PEVILRQGYGK---PVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGDEA 241
Query: 658 KFSEQESLLRRLMSPSPSDR---PSATELLQDALPPQMEYELLDNILRM-------MHSS 707
++ + L+ RL+ +P +R A E+ Q +++ L LR + S
Sbjct: 242 LPADAQDLISRLLRQNPLERLGTGGAFEVKQHRFFLGLDWNGL---LRQKAEFIPQLESE 298
Query: 708 EDTSIYD 714
+DTS +D
Sbjct: 299 DDTSYFD 305
>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase beta.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) beta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKbeta is expressed
ubiquitously in many tissues.
Length = 331
Score = 64.3 bits (156), Expect = 1e-10
Identities = 80/308 (25%), Positives = 132/308 (42%), Gaps = 78/308 (25%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
+DFE ++ +G G FG V + K K R YA+K + + +L+ T + +
Sbjct: 1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWE--------MLKRAETACFREER 52
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
+V+ +GD W T F + EN YLY+ M+
Sbjct: 53 NVL-------------VNGDCQWI--TTLHYAFQD-----------EN-----YLYLVMD 81
Query: 501 YCP----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
Y TL FE D +++A ++V + IH +HRD+ P+N+ D
Sbjct: 82 YYVGGDLLTLLSKFE--DRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNG 139
Query: 557 DIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ----VGTYFYTAPEI----EQG 608
I++ DFG LK+ Q DGT Q VGT Y +PEI E G
Sbjct: 140 HIRLADFG--SCLKMNQ----------------DGTVQSSVAVGTPDYISPEILQAMEDG 181
Query: 609 WPKIDEKADMYSLGIVFFELWH---PF--STAMERQIVLSDLKQKGELPPSWVAKFSEQ- 662
K + D +SLG+ +E+ + PF + +E + + +++ + PS + SE+
Sbjct: 182 MGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQF-PSHITDVSEEA 240
Query: 663 ESLLRRLM 670
+ L++RL+
Sbjct: 241 KDLIQRLI 248
>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 5. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K5, also called germinal
center kinase-related enzyme (GCKR), has been shown to
activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5
also facilitates Wnt signaling in B cells, and may
therefore be implicated in the control of cell fate,
proliferation, and polarity.
Length = 267
Score = 63.1 bits (153), Expect = 1e-10
Identities = 71/321 (22%), Positives = 133/321 (41%), Gaps = 83/321 (25%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLK---DKSLPVNDRILREVATLSRL 437
+D+E +Q +G G +G V +N G AVK I+L+ D SL I +E+ +
Sbjct: 9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSL-----IQQEIFMVKEC 63
Query: 438 QHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYI 497
+H ++V Y+ ++ L L+I
Sbjct: 64 KHCNIVAYFGSY----------------------------------------LSREKLWI 83
Query: 498 QMEYCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
MEYC +L+ ++ + ++ R+ ++GLA++H +G +HRD+ NI
Sbjct: 84 CMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNG 143
Query: 557 DIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQ-----GWPK 611
D+K+ DFG+A + + + +F +GT ++ APE+ G+ +
Sbjct: 144 DVKLADFGVAAKIT-ATIAKRKSF--------------IGTPYWMAPEVAAVEKNGGYNQ 188
Query: 612 IDEKADMYSLGIVFFEL--WHPFSTAMERQIVLSDLKQKGELPP------SWVAKFSEQE 663
+ D++++GI EL P + L + + PP W + F
Sbjct: 189 L---CDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTF---H 242
Query: 664 SLLRRLMSPSPSDRPSATELL 684
+ ++ ++ +P RP+A LL
Sbjct: 243 NFVKISLTKNPKKRPTAERLL 263
>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein
Serine/Threonine Kinase, beta-adrenergic receptor
kinase. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily,
beta-adrenergic receptor kinase (beta-ARK) group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. The beta-ARK
group is composed of GRK2, GRK3, and similar proteins.
GRK2 and GRK3 are both widely expressed in many tissues,
although GRK2 is present at higher levels. They contain
an N-terminal RGS homology (RH) domain, a central
catalytic domain, and C-terminal pleckstrin homology
(PH) domain that mediates PIP2 and G protein
betagamma-subunit translocation to the membrane. GRK2
(also called beta-ARK or beta-ARK1) is important in
regulating several cardiac receptor responses. It plays
a role in cardiac development and in hypertension.
Deletion of GRK2 in mice results in embryonic lethality,
caused by hypoplasia of the ventricular myocardium. GRK2
also plays important roles in the liver (as a regulator
of portal blood pressure), in immune cells, and in the
nervous system. Altered GRK2 expression has been
reported in several disorders including major
depression, schizophrenia, bipolar disorder, and
Parkinsonism.
Length = 278
Score = 63.0 bits (153), Expect = 2e-10
Identities = 50/157 (31%), Positives = 69/157 (43%), Gaps = 26/157 (16%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
+I+ GL H+H + +++RDL P NI D ++I D GLA D P
Sbjct: 105 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA-------CDFSKKKP----- 152
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWH---PF---STAMERQI 640
VGT+ Y APE+ Q D AD +SLG + F+L PF T + +I
Sbjct: 153 -----HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEI 207
Query: 641 VLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
L ELP S+ E SLL L+ + R
Sbjct: 208 DRMTLTMAVELPDSFS---PELRSLLEGLLQRDVNRR 241
Score = 33.8 bits (77), Expect = 0.43
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVK---KIRLKDK---SLPVNDRIL 428
+G GGFG V C+ G+ YA+K K R+K K +L +N+RI+
Sbjct: 2 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIM 47
>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional.
Length = 392
Score = 64.1 bits (156), Expect = 2e-10
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 14/103 (13%)
Query: 526 RQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTG 585
R+++E LA++HG+GIIHRD+ NIF D + +GDFG A +LD P
Sbjct: 192 RRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAAC-----KLDAHPDTPQC-- 244
Query: 586 GVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFEL 628
G GT +PE+ P K D++S G+V FE+
Sbjct: 245 ------YGWSGTLETNSPELLALDPYC-AKTDIWSAGLVLFEM 280
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs,
include PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 62.5 bits (152), Expect = 3e-10
Identities = 74/332 (22%), Positives = 128/332 (38%), Gaps = 86/332 (25%)
Query: 365 VDSGSPNMSLPSSRYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVN 424
VD G P YL++F ++ G G G V + +K GR AVKK+ L+ +
Sbjct: 12 VDPGDPR------SYLDNFVKI---GEGSTGIVCIATDKSTGRQVAVKKMDLRKQQR--R 60
Query: 425 DRILREVATLSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVT 484
+ + EV + QH ++V Y ++ GD +W
Sbjct: 61 ELLFNEVVIMRDYQHPNIVEMYSSYLV-------GDELW--------------------- 92
Query: 485 GQENKLESTYLYIQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRD 544
+ ME+ ++ ++E + +++ L+ +H QG+IHRD
Sbjct: 93 ------------VVMEFLEGGALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQGVIHRD 140
Query: 545 LTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ---VGTYFYT 601
+ ++I + +K+ DFG VS + + VGT ++
Sbjct: 141 IKSDSILLTSDGRVKLSDFGFC------------------AQVSKEVPRRKSLVGTPYWM 182
Query: 602 APEIEQGWPKIDEKADMYSLGIVFFELWH---PFST-----AMERQIVLSDLKQKGELPP 653
APE+ P + D++SLGI+ E+ P+ AM+R + D
Sbjct: 183 APEVISRLP-YGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKR---IRDNLPPKLKNL 238
Query: 654 SWVAKFSEQESLLRRLMSPSPSDRPSATELLQ 685
V+ S L R++ P+ R +A ELL
Sbjct: 239 HKVS--PRLRSFLDRMLVRDPAQRATAAELLN 268
>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 4.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 4, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK4 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK4 regulates cell morphology and
cytoskeletal organization. It is essential for embryonic
viability and proper neural development. Mice lacking
PAK4 die due to defects in the fetal heart. In addition,
their spinal cord motor neurons showed failure to
differentiate and migrate. PAK4 also plays a role in
cell survival and tumorigenesis. It is overexpressed in
many primary tumors including colon, esophageal, and
mammary tumors. PAK4 has also been implicated in viral
and bacterial infection pathways.
Length = 292
Score = 62.3 bits (151), Expect = 4e-10
Identities = 75/331 (22%), Positives = 130/331 (39%), Gaps = 84/331 (25%)
Query: 365 VDSGSPNMSLPSSRYLNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVN 424
VD G P YL++F ++ G G G V + K G+ AVKK+ L+ +
Sbjct: 13 VDPGDPRT------YLDNFIKI---GEGSTGIVCIATVKSSGKLVAVKKMDLRKQQR--R 61
Query: 425 DRILREVATLSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVT 484
+ + EV + QH++VV Y ++ GD +W
Sbjct: 62 ELLFNEVVIMRDYQHENVVEMYNSYLV-------GDELW--------------------- 93
Query: 485 GQENKLESTYLYIQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRD 544
+ ME+ ++ ++E + +++ L+ +H QG+IHRD
Sbjct: 94 ------------VVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRD 141
Query: 545 LTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE 604
+ ++I +K+ DFG + E + + VGT ++ APE
Sbjct: 142 IKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSL---------------VGTPYWMAPE 186
Query: 605 IEQGWPKIDEKADMYSLGIVFFELWH---PF-------STAMERQIVLSDLKQKGELPPS 654
+ P E D++SLGI+ E+ P+ + M R + LK ++ PS
Sbjct: 187 LISRLPYGPE-VDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPS 245
Query: 655 WVAKFSEQESLLRRLMSPSPSDRPSATELLQ 685
+ L RL+ P+ R +A ELL+
Sbjct: 246 L-------KGFLDRLLVRDPAQRATAAELLK 269
>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase. Serine/Threonine Kinases
(STKs), Rho-associated coiled-coil containing protein
kinase (ROCK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The ROCK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. ROCK is also referred to as Rho-associated
kinase or simply as Rho kinase. It contains an
N-terminal extension, a catalytic kinase domain, and a
long C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain. It is activated via interaction with Rho GTPases
and is involved in many cellular functions including
contraction, adhesion, migration, motility,
proliferation, and apoptosis. The ROCK subfamily
consists of two isoforms, ROCK1 and ROCK2, which may be
functionally redundant in some systems, but exhibit
different tissue distributions. Both isoforms are
ubiquitously expressed in most tissues, but ROCK2 is
more prominent in brain and skeletal muscle while ROCK1
is more pronounced in the liver, testes, and kidney.
Studies in knockout mice result in different phenotypes,
suggesting that the two isoforms do not compensate for
each other during embryonic development.
Length = 370
Score = 62.9 bits (153), Expect = 4e-10
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 23/141 (16%)
Query: 494 YLYIQMEYCPR-TLRQVFESYDHFDKELAWHLF--RQIVEGLAHIHGQGIIHRDLTPNNI 550
YLY+ MEY P L + +YD +K W F ++V L IH G IHRD+ P+N+
Sbjct: 117 YLYMVMEYMPGGDLVNLMSNYDIPEK---WARFYTAEVVLALDAIHSMGFIHRDVKPDNM 173
Query: 551 FFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI---EQ 607
D +K+ DFG ++D + DT VGT Y +PE+ +
Sbjct: 174 LLDKSGHLKLADFGTCM-----KMDANGMVRCDTA---------VGTPDYISPEVLKSQG 219
Query: 608 GWPKIDEKADMYSLGIVFFEL 628
G + D +S+G+ +E+
Sbjct: 220 GDGYYGRECDWWSVGVFLYEM 240
Score = 29.7 bits (67), Expect = 9.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVK 412
DF+ ++ +G G FG V L ++K + YA+K
Sbjct: 42 AEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMK 74
>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 2. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK2 was the first identified target of
activated RhoA, and was found to play a role in stress
fiber and focal adhesion formation. It is prominently
expressed in the brain, heart, and skeletal muscles. It
is implicated in vascular and neurological disorders,
such as hypertension and vasospasm of the coronary and
cerebral arteries. ROCK2 is also activated by caspase-2
cleavage, resulting in thrombin-induced microparticle
generation in response to cell activation. Mice
deficient in ROCK2 show intrauterine growth retardation
and embryonic lethality because of placental
dysfunction.
Length = 370
Score = 62.7 bits (152), Expect = 4e-10
Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 62/253 (24%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
D++ ++ +G G FG V L ++K + YA+K +L + + R
Sbjct: 44 DYDVVKVIGRGAFGEVQLVRHKSSQKVYAMK--------------LLSKFEMIKRSDSAF 89
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
W E + F +S W + Q++K YLY+ MEY
Sbjct: 90 F------WEERDIMAF-ANSPWVVQLFCAF--------------QDDK----YLYMVMEY 124
Query: 502 CPR-TLRQVFESYDHFDKELAWHLF--RQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
P L + +YD +K W F ++V L IH G+IHRD+ P+N+ D +
Sbjct: 125 MPGGDLVNLMSNYDVPEK---WAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHL 181
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI---EQGWPKIDEK 615
K+ DFG +K+++ TG V D VGT Y +PE+ + G +
Sbjct: 182 KLADFGTC--MKMDE----------TGMVRCDTA--VGTPDYISPEVLKSQGGDGYYGRE 227
Query: 616 ADMYSLGIVFFEL 628
D +S+G+ FE+
Sbjct: 228 CDWWSVGVFLFEM 240
>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine-like kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST-like (MASTL) kinases, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAST kinases contain an N-terminal domain of
unknown function, a central catalytic domain, and a
C-terminal PDZ domain that mediates protein-protein
interactions. The MASTL kinases in this group carry only
a catalytic domain, which contains a long insertion
relative to MAST kinases. The human MASTL gene has also
been labelled FLJ14813. A missense mutation in FLJ14813
is associated with autosomal dominant thrombocytopenia.
To date, the function of MASTL is unknown.
Length = 669
Score = 63.7 bits (155), Expect = 4e-10
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 40/187 (21%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
+F ++P+ G FG V L + K + + YAVK ++ K+ +N ++ +V
Sbjct: 5 EFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVK---KADMINKNMVHQV---------- 51
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
A+ D ++ S + +S ++A+ +Y+ MEY
Sbjct: 52 ------------QAERDALALSKSPFIVHLYYSLQSAN--------------NVYLVMEY 85
Query: 502 -CPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKI 560
++ + Y +FD+E+A ++ L ++H GIIHRDL P+N+ IK+
Sbjct: 86 LIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKL 145
Query: 561 GDFGLAK 567
DFGL+K
Sbjct: 146 TDFGLSK 152
Score = 34.9 bits (80), Expect = 0.28
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 585 GGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWH---PFSTAMERQIV 641
G V+G +GT Y APE+ G P D ++LG+ FE PF+ +Q+
Sbjct: 531 GAAPVEGERILGTPDYLAPELLLGKPH-GPAVDWWALGVCLFEFLTGIPPFNDETPQQVF 589
Query: 642 LSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQDALPPQMEYELLDN 699
+ L + P ++ + L++ P+ R EL Q L +++E L N
Sbjct: 590 QNILNRDIPWPEGEEKLSVNAQNAIEILLTMDPTKRAGLKELKQHPLFHGVDWENLQN 647
>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK4 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK4
partners with all three D-type cyclins (D1, D2, and D3)
and is also regulated by INK4 inhibitors. It is active
towards the retinoblastoma (pRb) protein and plays a
role in regulating the early G1 phase of the cell cycle.
It is expressed ubiquitously and is localized in the
nucleus. CDK4 also shows kinase activity towards Smad3,
a signal transducer of transforming growth factor
(TGF)-beta signaling which modulates transcription and
plays a role in cell proliferation and apoptosis. CDK4
is inhibited by the p21 inhibitor and is specifically
mutated in human melanoma.
Length = 288
Score = 61.1 bits (148), Expect = 8e-10
Identities = 65/254 (25%), Positives = 104/254 (40%), Gaps = 61/254 (24%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLK--DKSLPVNDRILREVATLSRLQ-- 438
+E + +G G +G V ++ G A+K +R++ + LP++ +REVA L RL+
Sbjct: 2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLS--TVREVALLKRLEAF 59
Query: 439 -HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYI 497
H ++VR L ++R T +E K+ +
Sbjct: 60 DHPNIVR-----------------------LMDVCATSR-------TDRETKVTLVF--- 86
Query: 498 QMEYCPRTLRQVFESYDH--FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDAR 555
E+ + LR + E L RQ + GL +H I+HRDL P NI +
Sbjct: 87 --EHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSG 144
Query: 556 NDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEK 615
+K+ DFGLA+ Q A P V T +Y APE+
Sbjct: 145 GQVKLADFGLARIYSC----QMALTPV------------VVTLWYRAPEVLLQ-STYATP 187
Query: 616 ADMYSLGIVFFELW 629
DM+S+G +F E++
Sbjct: 188 VDMWSVGCIFAEMF 201
>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C theta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), theta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta
is selectively expressed in T-cells and plays an
important and non-redundant role in several aspects of
T-cell biology. Although T-cells also express other PKC
isoforms, PKC-theta is unique in that upon antigen
stimulation, it is translocated to the plasma membrane
at the immunological synapse, where it mediates signals
essential for T-cell activation. It is essential for
TCR-induced proliferation, cytokine production, T-cell
survival, and the differentiation and effector function
of T-helper (Th) cells, particularly Th2 and Th17.
PKC-theta is being developed as a therapeutic target for
Th2-mediated allergic inflammation and Th17-mediated
autoimmune diseases.
Length = 316
Score = 61.1 bits (148), Expect = 9e-10
Identities = 56/187 (29%), Positives = 82/187 (43%), Gaps = 23/187 (12%)
Query: 495 LYIQMEYCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD 553
L+ MEY L +S FD A +I+ GL +H +GI++RDL +NI D
Sbjct: 71 LFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLD 130
Query: 554 ARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKID 613
IKI DFG+ K E + DA T GT Y APEI G K +
Sbjct: 131 TDGHIKIADFGMCK----ENMLGDAKTCT-----------FCGTPDYIAPEILLG-QKYN 174
Query: 614 EKADMYSLGIVFFELW---HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLM 670
D +S G++ +E+ PF E ++ S ++ P W+ + E + +L +L
Sbjct: 175 TSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQS-IRMDNPCYPRWLTR--EAKDILVKLF 231
Query: 671 SPSPSDR 677
P R
Sbjct: 232 VREPERR 238
>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 4. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK4
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK4 has a limited tissue distribution. It
is mainly found in the testis, but is also present in
the cerebellum and kidney. It is expressed as multiple
splice variants with different domain architectures. It
is post-translationally palmitoylated and localized in
the membrane. GRK4 polymorphisms are associated with
hypertension and salt sensitivity, as they cause
hyperphosphorylation, desensitization, and
internalization of the dopamine 1 (D1) receptor while
increasing the expression of the angiotensin II type 1
receptor. GRK4 plays a crucial role in the D1 receptor
regulation of sodium excretion and blood pressure.
Length = 285
Score = 60.8 bits (147), Expect = 1e-09
Identities = 52/174 (29%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 516 FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLD 575
FD++ A ++ GL + + I++RDL P NI D R I+I D GLA
Sbjct: 99 FDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLA--------- 149
Query: 576 QDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWH---PF 632
P G +V G+VGT Y APE+ K D + LG + +E+ PF
Sbjct: 150 --VQIPE---GETV--RGRVGTVGYMAPEVINN-EKYTFSPDWWGLGCLIYEMIQGQSPF 201
Query: 633 STAME---RQIVLSDLKQKGELPPSWVAKFSEQ-ESLLRRLMSPSPSDRPSATE 682
E R+ V +K+ E + KFSE +S+ R L++ +P +R
Sbjct: 202 RKRKERVKREEVDRRVKEDQE---EYSEKFSEDAKSICRMLLTKNPKERLGCRG 252
Score = 36.5 bits (84), Expect = 0.073
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKI------RLKDKSLPVND-RILREV 431
F + LG GGFG V C+ + G+ YA KK+ + K +++ +N+ RIL +V
Sbjct: 2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKV 57
>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C delta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), delta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta
plays a role in cell cycle regulation and programmed
cell death in many cell types. It slows down cell
proliferation, inducing cell cycle arrest and enhancing
cell differentiation. PKC-delta is also involved in the
regulation of transcription as well as immune and
inflammatory responses. It plays a central role in the
genotoxic stress response that leads to DNA
damaged-induced apoptosis.
Length = 316
Score = 60.7 bits (147), Expect = 1e-09
Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
+IV GL +H +GII+RDL +N+ D IKI DFG+ K E + D T
Sbjct: 104 EIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCK----ENVFGDNRAST---- 155
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELW---HPFSTAMERQIVLS 643
GT Y APEI QG K D +S G++ +E+ PF E ++ S
Sbjct: 156 -------FCGTPDYIAPEILQGL-KYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFES 207
Query: 644 DLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
++ P W+ K E + +L +L P+ R
Sbjct: 208 -IRVDTPHYPRWITK--ESKDILEKLFERDPTRR 238
>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C.
Serine/Threonine Kinases (STKs), Classical (or
Conventional) Protein Kinase C (cPKC) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. cPKCs contain a
calcium-binding C2 region in their regulatory domain.
There are four cPKC isoforms, named alpha, betaI,
betaII, and gamma. cPKCs are potent kinases for
histones, myelin basic protein, and protamine. PKC-gamma
is mainly expressed in neuronal tissues. It plays a role
in protection from ischemia.
Length = 324
Score = 60.9 bits (148), Expect = 1e-09
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 22/154 (14%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
+I GL +H +GII+RDL +N+ DA IKI DFG+ K + F T
Sbjct: 109 EIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCK---------ENIFGGKTTR 159
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWH---PFSTAMERQIVLS 643
GT Y APEI P + D ++ G++ +E+ PF E ++ S
Sbjct: 160 TF------CGTPDYIAPEIIAYQP-YGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQS 212
Query: 644 DLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
++ P S ++K E S+ + L++ P+ R
Sbjct: 213 IMEHNVSYPKS-LSK--EAVSICKGLLTKHPAKR 243
Score = 29.7 bits (67), Expect = 8.1
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKD 418
DF L LG G FG V+L + K YA+K ++ KD
Sbjct: 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILK-KD 36
>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 2. Protein kinases (PKs),
MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK2 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK2, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 331
Score = 60.8 bits (147), Expect = 1e-09
Identities = 80/327 (24%), Positives = 133/327 (40%), Gaps = 76/327 (23%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
+DFE + LG G G V ++K G A K I L+ K + ++I+RE+ L
Sbjct: 5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKP-AIRNQIIRELQVLHECNSP 63
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++V +Y A++ G + M G
Sbjct: 64 YIVGFYGAFYSDGEISICMEHMDGG----------------------------------- 88
Query: 501 YCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQ-GIIHRDLTPNNIFFDARNDIK 559
+L QV + +E+ + ++ GLA++ + I+HRD+ P+NI ++R +IK
Sbjct: 89 ----SLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIK 144
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ--VGTYFYTAPEIEQGWPKIDEKAD 617
+ DFG++ G +D VGT Y +PE QG ++D
Sbjct: 145 LCDFGVS-------------------GQLIDSMANSFVGTRSYMSPERLQG-THYSVQSD 184
Query: 618 MYSLGIVFFELWHPFSTAMER-QIVLSDLKQKGEL--PPSWVAKFSEQESLLRRLMSPSP 674
++S+G+ EL A+ R I D K+ + P + E S+ R P P
Sbjct: 185 IWSMGLSLVEL------AIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPR---PRP 235
Query: 675 SDRPSATELLQDALPPQMEYELLDNIL 701
RP + + D+ P +ELLD I+
Sbjct: 236 PGRPVSGHGM-DSRPAMAIFELLDYIV 261
>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Traf2- and Nck-interacting
kinase. Serine/threonine kinases (STKs), Traf2- and
Nck-interacting kinase (TNIK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The TNIK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to mitogen-activated protein kinase (MAPK),
kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks
participate in some MAPK signaling pathways by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). TNIK is an effector of Rap2, a small GTP-binding
protein from the Ras family. TNIK specifically activates
the c-Jun N-terminal kinase (JNK) pathway and plays a
role in regulating the actin cytoskeleton.
Length = 272
Score = 60.1 bits (145), Expect = 2e-09
Identities = 70/324 (21%), Positives = 130/324 (40%), Gaps = 84/324 (25%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKK---IRLKDKSLPVNDRILREVATLSRL-Q 438
FE ++ +G+G +G V GRH + I++ D + + I +E+ L +
Sbjct: 8 FELVELVGNGTYGQV------YKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSH 61
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H+++ YY A+ + D D +W +
Sbjct: 62 HRNIATYYGAFIKKNPPGMD-DQLW---------------------------------LV 87
Query: 499 MEYC-PRTLRQVFESY--DHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDAR 555
ME+C ++ + ++ + +E ++ R+I+ GL+H+H +IHRD+ N+
Sbjct: 88 MEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTEN 147
Query: 556 NDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI----EQGWPK 611
++K+ DFG++ QLD+ +GT ++ APE+ E
Sbjct: 148 AEVKLVDFGVSA-----QLDRTVGRRNTF----------IGTPYWMAPEVIACDENPDAT 192
Query: 612 IDEKADMYSLGIVFFEL---------WHPFSTAMERQIVLSDLKQKGEL-PPSWVAKFSE 661
D K+D++SLGI E+ HP R + L L W KF
Sbjct: 193 YDFKSDLWSLGITAIEMAEGAPPLCDMHPM-----RALFLIPRNPAPRLKSKKWSKKF-- 245
Query: 662 QESLLRRLMSPSPSDRPSATELLQ 685
+S + + + S RP+ +L++
Sbjct: 246 -QSFIESCLVKNHSQRPTTEQLMK 268
>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
LATS subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. LATS was originally identified in Drosophila
using a screen for genes whose inactivation led to
overproliferation of cells. In tetrapods, there are two
LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in
mice results in the development of various tumors,
including sarcomas and ovarian cancer. LATS functions as
a tumor suppressor and is implicated in cell cycle
regulation.
Length = 376
Score = 61.0 bits (148), Expect = 2e-09
Identities = 80/336 (23%), Positives = 129/336 (38%), Gaps = 90/336 (26%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRH-YAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
F +++ +G G FG V L + K+D YA+K +R D L R Q H
Sbjct: 3 FVKIKTIGIGAFGEVCLVR-KVDTNALYAMKTLRKAD--------------VLMRNQAAH 47
Query: 442 VVRYYQAWFETGVADFD----GDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYI 497
V A+ D D+ W S F + ++N LY
Sbjct: 48 VK-----------AERDILAEADNEWVVKLYYS--FQD----------KDN------LYF 78
Query: 498 QMEYCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
M+Y P + + F+++LA ++ + +H G IHRD+ P+NI D
Sbjct: 79 VMDYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDG 138
Query: 557 DIKIGDFGLAK----------FLKLEQLDQDAAFPTDTGG---------VSVDGTGQ--- 594
IK+ DFGL + K + QD+ P++ + Q
Sbjct: 139 HIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQR 198
Query: 595 ------VGTYFYTAPEI--EQGWPKIDEKADMYSLGIVFFELW---HPF--STAMERQIV 641
VGT Y APE+ G+ ++ D +S+G++ +E+ PF T E Q+
Sbjct: 199 CLAHSLVGTPNYIAPEVLLRTGYTQL---CDWWSVGVILYEMLVGQPPFLADTPAETQLK 255
Query: 642 LSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
+ + + +P AK S + S L + DR
Sbjct: 256 VINWETTLHIPSQ--AKLSREASDLILRLCCGAEDR 289
>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Tyrosine kinase expressed in hepatocellular carcinoma
(Tec) subfamily; catalytic (c) domain. The Tec subfamily
is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk
(Txk), and similar proteins. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tec kinases are
cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with
similarity to Src kinases in that they contain Src
homology protein interaction domains (SH3, SH2)
N-terminal to the catalytic tyr kinase domain. Unlike
Src kinases, most Tec subfamily members (except Rlk)
also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, some
members contain the Tec homology (TH) domain, which
contains proline-rich and zinc-binding regions. Tec
kinases form the second largest subfamily of nRTKs and
are expressed mainly by haematopoietic cells, although
Tec and Bmx are also found in endothelial cells. B-cells
express Btk and Tec, while T-cells express Itk, Txk, and
Tec. Collectively, Tec kinases are expressed in a
variety of myeloid cells such as mast cells, platelets,
macrophages, and dendritic cells. Each Tec kinase shows
a distinct cell-type pattern of expression. The function
of Tec kinases in lymphoid cells have been studied
extensively. They play important roles in the
development, differentiation, maturation, regulation,
survival, and function of B-cells and T-cells. Mutations
in Btk cause the severe B-cell immunodeficiency,
X-linked agammaglobulinaemia (XLA).
Length = 256
Score = 59.4 bits (144), Expect = 2e-09
Identities = 68/311 (21%), Positives = 117/311 (37%), Gaps = 79/311 (25%)
Query: 386 LQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRY 445
L+ LG G FG V L K + A+K IR + ++ +D I E + +L H ++V+
Sbjct: 9 LKELGSGQFGVVHLGKWR-GKIDVAIKMIR--EGAMSEDDFI-EEAKVMMKLSHPNLVQL 64
Query: 446 YQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY---- 501
Y GV + ++I EY
Sbjct: 65 Y------GVC----------------------------------TKQRPIFIVTEYMANG 84
Query: 502 CPRT-LRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKI 560
C LR+ E + + E + ++ G IHRDL N N +K+
Sbjct: 85 CLLNYLRERKGK---LGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKV 141
Query: 561 GDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYF---YTAPEIEQGWPKIDEKAD 617
DFGLA+++ LD T GT F + PE+ + + K+D
Sbjct: 142 SDFGLARYV----LDDQY-------------TSSQGTKFPVKWAPPEVFD-YSRFSSKSD 183
Query: 618 MYSLGIVFFELWH----PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPS 673
++S G++ +E++ P+ + V+ + L +A +E +++
Sbjct: 184 VWSFGVLMWEVFSEGKMPYERFSNSE-VVESVSAGYRLYRPKLAP-TEVYTIMYSCWHEK 241
Query: 674 PSDRPSATELL 684
P DRP+ +LL
Sbjct: 242 PEDRPAFKKLL 252
>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 6.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 6 (CDK6) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK6
is regulated by D-type cyclins and INK4 inhibitors. It
is active towards the retinoblastoma (pRb) protein,
implicating it to function in regulating the early G1
phase of the cell cycle. It is expressed ubiquitously
and is localized in the cytoplasm. It is also present in
the ruffling edge of spreading fibroblasts and may play
a role in cell spreading. It binds to the p21 inhibitor
without any effect on its own activity and it is
overexpressed in squamous cell carcinomas and
neuroblastomas. CDK6 has also been shown to inhibit cell
differentiation in many cell types.
Length = 290
Score = 59.6 bits (144), Expect = 3e-09
Identities = 70/322 (21%), Positives = 122/322 (37%), Gaps = 90/322 (27%)
Query: 383 FEELQPLGHGGFGHVVLCKN-KLDGRHYAVKKIRLK--DKSLPVNDRILREVATLSRLQ- 438
+E + +G G +G V ++ K GR A+K++R++ ++ +P++ +REVA L L+
Sbjct: 3 YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLS--TIREVAVLRHLET 60
Query: 439 --HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLY 496
H +VVR + DV T L
Sbjct: 61 FEHPNVVRLF-----------------------------------DVCTVSRTDRETKLT 85
Query: 497 IQMEYCPRTLRQVFESYDH--FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDA 554
+ E+ + L + E + Q++ GL +H ++HRDL P NI +
Sbjct: 86 LVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTS 145
Query: 555 RNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI--EQGWPKI 612
IK+ DFGLA+ + T V T +Y APE+ + +
Sbjct: 146 SGQIKLADFGLARIYSFQMAL----------------TSVVVTLWYRAPEVLLQSSYAT- 188
Query: 613 DEKADMYSLGIVFFELWHPFSTAMERQIVL---SDLKQKGELPPSWVAKFSEQESLLRRL 669
D++S+G +F E++ R+ + SD+ Q G++ L +
Sbjct: 189 --PVDLWSVGCIFAEMF-------RRKPLFRGSSDVDQLGKI--------------LDVI 225
Query: 670 MSPSPSDRPSATELLQDALPPQ 691
P D P L + A +
Sbjct: 226 GLPGEEDWPRDVALPRQAFHSK 247
>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-2 is also
referred to as ALS2CR7 (amyotrophic lateral sclerosis 2
(juvenile) chromosome region candidate 7). It may be
associated with amyotrophic lateral sclerosis 2 (ALS2),
an autosomal recessive form of juvenile ALS. The
function of PFTAIRE-2 is not yet known.
Length = 291
Score = 59.6 bits (144), Expect = 3e-09
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
Q++ GLA+IHGQ I+HRDL P N+ ++K+ DFGLA+ + P+ T
Sbjct: 111 QLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLAR---------AKSIPSQT-- 159
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFEL 628
+ +V T +Y P++ G D++ G +F E+
Sbjct: 160 ----YSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEM 197
>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 1. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK1 is preferentially expressed in the liver,
lung, spleen, testes, and kidney. It mediates signaling
from Rho to the actin cytoskeleton. It is implicated in
the development of cardiac fibrosis, cardiomyocyte
apoptosis, and hyperglycemia. Mice deficient with ROCK1
display eyelids open at birth (EOB) and omphalocele
phenotypes due to the disorganization of actin filaments
in the eyelids and the umbilical ring.
Length = 371
Score = 60.0 bits (145), Expect = 3e-09
Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 62/253 (24%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
D+E ++ +G G FG V L ++K + YA+K +L + + R
Sbjct: 44 DYEVVKVIGRGAFGEVQLVRHKSTRKVYAMK--------------LLSKFEMIKRSDSAF 89
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
W E + F +S W + ++ + + YLY+ MEY
Sbjct: 90 F------WEERDIMAF-ANSPW----VVQLFYAFQ--------------DDRYLYMVMEY 124
Query: 502 CPR-TLRQVFESYDHFDKELAWHLF--RQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
P L + +YD +K W F ++V L IH G IHRD+ P+N+ D +
Sbjct: 125 MPGGDLVNLMSNYDVPEK---WARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHL 181
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI---EQGWPKIDEK 615
K+ DFG +++++ DT VGT Y +PE+ + G +
Sbjct: 182 KLADFGTCM-----KMNKEGMVRCDTA---------VGTPDYISPEVLKSQGGDGYYGRE 227
Query: 616 ADMYSLGIVFFEL 628
D +S+G+ +E+
Sbjct: 228 CDWWSVGVFLYEM 240
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation
of p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 58.9 bits (142), Expect = 3e-09
Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 30/171 (17%)
Query: 526 RQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTG 585
+Q +E L ++H IIHRDL NI F DIK+ DFG++ + + +F
Sbjct: 110 KQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSA-KNTRTIQRRDSF----- 163
Query: 586 GVSVDGTGQVGTYFYTAPEI-----EQGWPKIDEKADMYSLGIVFFELWHPFSTAMERQI 640
+GT ++ APE+ + P D KAD++SLGI E+ E
Sbjct: 164 ---------IGTPYWMAPEVVMCETSKDRP-YDYKADVWSLGITLIEMAQIEPPHHELNP 213
Query: 641 VLSDLKQKGELPPS------WVAKFSEQESLLRRLMSPSPSDRPSATELLQ 685
+ LK PP+ W ++F + L++ + + R + T+LLQ
Sbjct: 214 MRVLLKIAKSEPPTLAQPSRWSSEFKD---FLKKCLEKNVDARWTTTQLLQ 261
>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional.
Length = 391
Score = 60.0 bits (145), Expect = 4e-09
Identities = 54/184 (29%), Positives = 74/184 (40%), Gaps = 33/184 (17%)
Query: 526 RQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTG 585
R ++ + ++H IIHRD+ NIF + D+ +GDFG A FP D
Sbjct: 189 RSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGA------------ACFPVDIN 236
Query: 586 GVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWHPFSTAME-------- 637
G GT APE+ P D++S GIV FE+ + E
Sbjct: 237 ANKY--YGWAGTIATNAPELLARDP-YGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDC 293
Query: 638 ---RQIVLSDLKQKG----ELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQDALPP 690
RQI L +++ G E P A E L + S P RP T L + LP
Sbjct: 294 DSDRQIKLI-IRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYE--LPI 350
Query: 691 QMEY 694
+EY
Sbjct: 351 DLEY 354
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 60.3 bits (146), Expect = 4e-09
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 526 RQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTG 585
RQ++ + +IHG+GIIHRD+ N+ + DI +GDFG A F + F
Sbjct: 267 RQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFA---RGSWSTPFH---- 319
Query: 586 GVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFE 627
G GT APE+ G P D++S G+V FE
Sbjct: 320 ------YGIAGTVDTNAPEVLAGDP-YTPSVDIWSAGLVIFE 354
>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional.
Length = 440
Score = 59.7 bits (144), Expect = 5e-09
Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 21/143 (14%)
Query: 491 ESTYLYIQMEYCPRTLRQVFESYDHFDKELAWHLFR----QIVEGLAHIHGQGIIHRDLT 546
++ +L + ME+ P+T+ + + Y + L L + Q+ LA+IH + I HRDL
Sbjct: 138 KNIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLK 197
Query: 547 PNNIFFDAR-NDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI 605
P N+ D + +K+ DFG AK L G SV + + FY APE+
Sbjct: 198 PQNLLIDPNTHTLKLCDFGSAKNLL-------------AGQRSVS---YICSRFYRAPEL 241
Query: 606 EQGWPKIDEKADMYSLGIVFFEL 628
G D++SLG + E+
Sbjct: 242 MLGATNYTTHIDLWSLGCIIAEM 264
>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 1. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK1,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK1 plays a role in the regulation
of translational control and transcriptional activation.
It phosphorylates the transcription factors, CREB and
NFkappaB. It also phosphorylates the nucleosomal
proteins H3 and HMG-14. Increased phosphorylation of
MEK1 is associated with the development of cerebral
ischemic/hypoxic preconditioning.
Length = 290
Score = 58.5 bits (141), Expect = 6e-09
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 23/158 (14%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
+IV L H+H GII+RD+ NI D+ + + DFGL+K +++++ +F
Sbjct: 113 EIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSF------ 166
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKA-DMYSLGIVFFELW---HPFSTAMER--QI 640
GT Y AP+I +G +KA D +S+G++ +EL PF+ E+ Q
Sbjct: 167 --------CGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQA 218
Query: 641 VLSDLKQKGELP-PSWVAKFSEQESLLRRLMSPSPSDR 677
+S K E P P ++ + + +++RL+ P R
Sbjct: 219 EISRRILKSEPPYPQEMSALA--KDIIQRLLMKDPKKR 254
>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 3. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK3 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGK3 is
expressed in most tissues and is most abundant in the
embryo and adult heart and spleen. It was originally
discovered in a screen for antiapoptotic genes. It
phosphorylates and inhibits the proapoptotic proteins,
Bad and FKHRL1. SGK3 also regulates many transporters,
ion channels, and receptors. It plays a critical role in
hair follicle morphogenesis and hair cycling.
Length = 325
Score = 58.9 bits (142), Expect = 6e-09
Identities = 62/254 (24%), Positives = 100/254 (39%), Gaps = 70/254 (27%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYYQA 448
+G G FG V+L K KLDG+ YAVK +L++ L+R + +H+
Sbjct: 3 IGKGSFGKVLLAKRKLDGKCYAVK--------------VLQKKIVLNRKEQKHI------ 42
Query: 449 WFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLEST-YLYIQMEYCPRTLR 507
+A + + G ++T LY +++
Sbjct: 43 -------------------MAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGG-- 81
Query: 508 QVFESYDHFDKELAWHLFR------QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
E + H +E ++ R +I L ++H I++RDL P NI D++ + +
Sbjct: 82 ---ELFFHLQRERSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLT 138
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSL 621
DFGL K + Q D F GT Y APE+ + P D D + L
Sbjct: 139 DFGLCK-EGIAQSDTTTTF--------------CGTPEYLAPEVIRKQP-YDNTVDWWCL 182
Query: 622 GIVFFELWH---PF 632
G V +E+ + PF
Sbjct: 183 GAVLYEMLYGLPPF 196
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 58.4 bits (141), Expect = 6e-09
Identities = 63/250 (25%), Positives = 107/250 (42%), Gaps = 54/250 (21%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDG----RHYAVKKIRLKDKSLPVNDRILREVATLSRLQ 438
+ ++ LG G FG V LC+ +G AVK ++ + + D + +E+ L L
Sbjct: 6 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIAD-LKKEIEILRNLY 64
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H+++V+Y G+ DG G+G F L S L
Sbjct: 65 HENIVKY------KGICTEDG----GNGIKLIMEF----------------LPSGSL--- 95
Query: 499 MEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
EY PR ++ + ++L + + QI +G+ ++ + +HRDL N+ ++ + +
Sbjct: 96 KEYLPRNKNKI-----NLKQQLKYAV--QICKGMDYLGSRQYVHRDLAARNVLVESEHQV 148
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADM 618
KIGDFGL K A TD +V ++Y APE K +D+
Sbjct: 149 KIGDFGLTK-----------AIETDKEYYTVKDDLDSPVFWY-APECLIQ-SKFYIASDV 195
Query: 619 YSLGIVFFEL 628
+S G+ +EL
Sbjct: 196 WSFGVTLYEL 205
>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 1.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
Inactivation of LATS1 in mice results in the development
of various tumors, including sarcomas and ovarian
cancer. Promoter methylation, loss of heterozygosity,
and missense mutations targeting the LATS1 gene have
also been found in human sarcomas and ovarian cancers.
In addition, decreased expression of LATS1 is associated
with an aggressive phenotype and poor prognosis. LATS1
induces G2 arrest and promotes cytokinesis. It may be a
component of the mitotic exit network in higher
eukaryotes.
Length = 382
Score = 58.9 bits (142), Expect = 8e-09
Identities = 80/336 (23%), Positives = 129/336 (38%), Gaps = 86/336 (25%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVN-DRILREVATLSRLQHQH 441
F +++ LG G FG V L + YA+K +R KD L + E L+ ++
Sbjct: 3 FVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEW 62
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
VVR Y + F+ D D+ LY M+Y
Sbjct: 63 VVRLYYS-FQ------DKDN---------------------------------LYFVMDY 82
Query: 502 CPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKI 560
P + + F ++LA ++ + +H G IHRD+ P+NI D IK+
Sbjct: 83 IPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKL 142
Query: 561 GDFGLAKFLKL----------EQLDQDAA-FPTDTGGVSVDGTGQ--------------- 594
DFGL + + + QD+ F + G + G
Sbjct: 143 TDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQR 202
Query: 595 ------VGTYFYTAPEI--EQGWPKIDEKADMYSLGIVFFEL---WHPF--STAMERQIV 641
VGT Y APE+ G+ ++ D +S+G++ +E+ PF T +E Q+
Sbjct: 203 CLAHSLVGTPNYIAPEVLLRTGYTQL---CDWWSVGVILYEMLVGQPPFLAQTPLETQMK 259
Query: 642 LSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
+ + + +PP AK S + S L + P DR
Sbjct: 260 VINWQTSLHIPPQ--AKLSPEASDLIIKLCRGPEDR 293
>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein
Serine/Threonine Kinases, Mitogen-Activated Protein
Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6
(or MAP4K6) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAP4K4/MAP4K6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain. MAP4Ks (or
MAPKKKKs) are involved in MAPK signaling pathways that
are important in mediating cellular responses to
extracellular signals by activating a MAPK kinase kinase
(MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAP4K4 is also called Nck Interacting kinase
(NIK). It facilitates the activation of the MAPKs,
extracellular signal-regulated kinase (ERK) 1, ERK2, and
c-Jun N-terminal kinase (JNK), by phosphorylating and
activating MEKK1. MAP4K4 plays a role in tumor necrosis
factor (TNF) alpha-induced insulin resistance. MAP4K4
silencing in skeletal muscle cells from type II diabetic
patients restores insulin-mediated glucose uptake.
MAP4K4, through JNK, also plays a broad role in cell
motility, which impacts inflammation, homeostasis, as
well as the invasion and spread of cancer. MAP4K4 is
found to be highly expressed in most tumor cell lines
relative to normal tissue. MAP4K6 (also called MINK for
Misshapen/NIKs-related kinase) is activated after Ras
induction and mediates activation of p38 MAPK. MAP4K6
plays a role in cell cycle arrest, cytoskeleton
organization, cell adhesion, and cell motility.
Length = 282
Score = 58.1 bits (140), Expect = 8e-09
Identities = 56/257 (21%), Positives = 107/257 (41%), Gaps = 66/257 (25%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKK---IRLKDKSLPVNDRILREVATLSRL-Q 438
FE ++ +G+G +G V GRH + I++ D + + I E+ L +
Sbjct: 18 FELVEVVGNGTYGQV------YKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSH 71
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H+++ YY A+ + D D +W +
Sbjct: 72 HRNIATYYGAFIKKSPPGHD-DQLW---------------------------------LV 97
Query: 499 MEYC-PRTLRQVFESY--DHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDAR 555
ME+C ++ + ++ + ++ ++ R+I+ GLAH+H +IHRD+ N+
Sbjct: 98 MEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTEN 157
Query: 556 NDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI----EQGWPK 611
++K+ DFG++ QLD+ +GT ++ APE+ E
Sbjct: 158 AEVKLVDFGVSA-----QLDRTVGRRNTF----------IGTPYWMAPEVIACDENPDAT 202
Query: 612 IDEKADMYSLGIVFFEL 628
D ++D++SLGI E+
Sbjct: 203 YDYRSDIWSLGITAIEM 219
>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 1. Protein kinases (PKs),
MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK1 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients. MEK1 also plays a role in cell
cycle control.
Length = 333
Score = 58.1 bits (140), Expect = 9e-09
Identities = 76/325 (23%), Positives = 131/325 (40%), Gaps = 74/325 (22%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
+DFE++ LG G G V +K G A K I L+ K + ++I+RE+ L
Sbjct: 5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKP-AIRNQIIRELQVLHECNSP 63
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++V +Y A++ G + M G
Sbjct: 64 YIVGFYGAFYSDGEISICMEHMDGG----------------------------------- 88
Query: 501 YCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQ-GIIHRDLTPNNIFFDARNDIK 559
+L QV + +++ + +++GL ++ + I+HRD+ P+NI ++R +IK
Sbjct: 89 ----SLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIK 144
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ--VGTYFYTAPEIEQGWPKIDEKAD 617
+ DFG++ G +D VGT Y +PE QG ++D
Sbjct: 145 LCDFGVS-------------------GQLIDSMANSFVGTRSYMSPERLQG-THYSVQSD 184
Query: 618 MYSLGIVFFELWHPFSTAMER-QIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSD 676
++S+G+ E+ A+ R I D K+ + V + R P P
Sbjct: 185 IWSMGLSLVEM------AIGRYPIPPPDAKELELMFGCPVEGDPAESETSPR---PRPPG 235
Query: 677 RPSATELLQDALPPQMEYELLDNIL 701
RP ++ D+ PP +ELLD I+
Sbjct: 236 RPLSS-YGPDSRPPMAIFELLDYIV 259
>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C epsilon.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), epsilon isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta.
PKC-epsilon has been shown to behave as an oncoprotein.
Its overexpression contributes to neoplastic
transformation depending on the cell type. It
contributes to oncogenesis by inducing disordered cell
growth and inhibiting cell death. It also plays a role
in tumor invasion and metastasis. PKC-epsilon has also
been found to confer cardioprotection against ischemia
and reperfusion-mediated damage. Other cellular
functions include the regulation of gene expression,
cell adhesion, and cell motility.
Length = 321
Score = 57.9 bits (140), Expect = 1e-08
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 22/165 (13%)
Query: 516 FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLD 575
FD+ + ++ L +H G+I+RDL +NI DA K+ DFG+ K E +
Sbjct: 93 FDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCK----EGIL 148
Query: 576 QDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWH---PF 632
T GT Y APEI Q D ++LG++ +E+ PF
Sbjct: 149 NGVTTTT-----------FCGTPDYIAPEILQELE-YGPSVDWWALGVLMYEMMAGQPPF 196
Query: 633 STAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
E + S L L P W++K E S+L+ M+ +P+ R
Sbjct: 197 EADNEDDLFESILHDD-VLYPVWLSK--EAVSILKAFMTKNPNKR 238
>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP
kinase kinase 5 (MKK5) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK5 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK5, also referred to as MEK5, is a
dual-specificity PK that phosphorylates its downstream
target, extracellular signal-regulated kinase 5 (ERK5),
on specific threonine and tyrosine residues. MKK5 is
activated by MEKK2 and MEKK3 in response to mitogenic
and stress stimuli. The ERK5 cascade promotes cell
proliferation, differentiation, neuronal survival, and
neuroprotection. This cascade plays an essential role in
heart development. Mice deficient in either ERK5 or MKK5
die around embryonic day 10 due to cardiovascular
defects including underdevelopment of the myocardium. In
addition, MKK5 is associated with metastasis and
unfavorable prognosis in prostate cancer.
Length = 279
Score = 57.6 bits (139), Expect = 1e-08
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 27/166 (16%)
Query: 528 IVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGV 587
+V+GL ++ I+HRD+ P+N+ + R +K+ DFG++ L V
Sbjct: 104 VVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQL-----------------V 146
Query: 588 SVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFEL---WHPFSTAMERQIVLSD 644
+ VGT Y APE G + +D++SLGI F EL P+ + Q L
Sbjct: 147 NSIAKTYVGTNAYMAPERISG-EQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMP 205
Query: 645 LKQ----KGELPPSW-VAKFSEQ-ESLLRRLMSPSPSDRPSATELL 684
L+ E PP V +FSE+ + + M P +RP+ L+
Sbjct: 206 LQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKERPAPENLM 251
Score = 34.1 bits (78), Expect = 0.33
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
D + + LGHG G V + L R AVK I L D ++ + +I+ E+ L + +
Sbjct: 2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPL-DITVELQKQIMSELEILYKCDSPY 60
Query: 442 VVRYYQAWF 450
++ +Y A+F
Sbjct: 61 IIGFYGAFF 69
>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein
Serine/Threonine Kinase, Group I p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group I, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs are
implicated in the regulation of many cellular processes
including growth factor receptor-mediated proliferation,
cell polarity, cell motility, cell death and survival,
and actin cytoskeleton organization. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs, also called conventional PAKs, include
PAK1, PAK2, and PAK3. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). They interact
with the SH3 domain containing proteins Nck, Grb2 and
PIX. Binding of group I PAKs to activated GTPases leads
to conformational changes that destabilize the AID,
allowing autophosphorylation and full activation of the
kinase domain. Known group I PAK substrates include
MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc,
Stat5a, and Aurora A, among others.
Length = 293
Score = 57.2 bits (138), Expect = 1e-08
Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 66/250 (26%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+ + +G G G V + G+ A+K++ L+ + P + I+ E+ + +H ++
Sbjct: 21 YTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQ--PKKELIINEILVMRENKHPNI 78
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
V Y ++ GD +W + MEY
Sbjct: 79 VNYLDSYLV-------GDELW---------------------------------VVMEYL 98
Query: 503 PR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
+L V + ++A + R+ ++ L +H +IHRD+ +NI +K+
Sbjct: 99 AGGSLTDVVTETCMDEGQIA-AVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLT 157
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI---EQGWPKIDEKADM 618
DFG + EQ + + VGT ++ APE+ + PK+ D+
Sbjct: 158 DFGFCAQITPEQSKR---------------STMVGTPYWMAPEVVTRKAYGPKV----DI 198
Query: 619 YSLGIVFFEL 628
+SLGI+ E+
Sbjct: 199 WSLGIMAIEM 208
>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C eta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), eta isoform, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta
is predominantly expressed in squamous epithelia, where
it plays a crucial role in the signaling of cell-type
specific differentiation. It is also expressed in pro-B
cells and early-stage thymocytes, and acts as a key
regulator in early B-cell development. PKC-eta increases
glioblastoma multiforme (GBM) proliferation and
resistance to radiation, and is being developed as a
therapeutic target for the management of GBM.
Length = 320
Score = 57.2 bits (138), Expect = 2e-08
Identities = 75/308 (24%), Positives = 121/308 (39%), Gaps = 75/308 (24%)
Query: 387 QPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVND--------RILREVATLSRLQ 438
+ LG G FG V+L + K GR YAVK ++ KD L +D RIL +L+R
Sbjct: 1 RVLGKGSFGKVMLARLKESGRLYAVKVLK-KDVILQDDDVECTMTEKRIL----SLAR-N 54
Query: 439 HQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
H + + Y F+T F F + D L
Sbjct: 55 HPFLTQLYCC-FQTPDRLF---------------FVMEFVNGGD------------LMFH 86
Query: 499 MEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
++ R FD+ A +I L +H +GII+RDL +N+ D
Sbjct: 87 IQKSRR-----------FDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHC 135
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADM 618
K+ DFG+ K E + T GT Y APEI Q D
Sbjct: 136 KLADFGMCK----EGIFNGKTTST-----------FCGTPDYIAPEILQEM-LYGPSVDW 179
Query: 619 YSLGIVFFELW---HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPS 675
+++G++ +E+ PF E + + L + + P+W+++ + +L+ M+ +P+
Sbjct: 180 WAMGVLLYEMLCGHAPFEAENEDDLFEAILNDE-VVYPTWLSQ--DAVDILKAFMTKNPT 236
Query: 676 DRPSATEL 683
R + L
Sbjct: 237 MRLGSLTL 244
>gnl|CDD|214735 smart00591, RWD, domain in RING finger and WD repeat containing
proteins and DEXDc-like helicases subfamily related to
the UBCc domain.
Length = 107
Score = 53.1 bits (128), Expect = 2e-08
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 42 CLPGYPYKCPKLQITPEKGLTKSDADNLLCLLQDQANSNAREGRVMIFNLVEAAQEFLSE 101
YP + P + + +GL+ LL L++ A N G VMIF LVE QEFLSE
Sbjct: 49 LPENYPDEAPPISLLNSEGLSDEQLAELLKKLEEIAEEN--LGEVMIFELVEKLQEFLSE 106
Query: 102 I 102
Sbjct: 107 F 107
>gnl|CDD|218742 pfam05773, RWD, RWD domain. This domain was identified in WD40
repeat proteins and Ring finger domain proteins. The
function of this domain is unknown. GCN2 is the
alpha-subunit of the only translation initiation factor
(eIF2 alpha) kinase that appears in all eukaryotes. Its
function requires an interaction with GCN1 via the
domain at its N-terminus, which is termed the RWD domain
after three major RWD-containing proteins: RING
finger-containing proteins, WD-repeat-containing
proteins, and yeast DEAD (DEXD)-like helicases. The
structure forms an alpha + beta sandwich fold consisting
of two layers: a four-stranded antiparallel beta-sheet,
and three side-by-side alpha-helices.
Length = 113
Score = 53.1 bits (128), Expect = 2e-08
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 44 PGYPYKCPKLQITPEKGLTKSDADNLLCLLQDQANSNAREGRVMIFNLVEAAQEFL 99
YP + PK+ ++ L D LL L++ A N G VMIF L+E QE L
Sbjct: 60 EDYPDEPPKISLSSPWLLRDQDKLQLLKELEELAEENL--GEVMIFELIEWLQENL 113
>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 1. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously
expressed and is under transcriptional control of
numerous stimuli including cell stress (cell shrinkage),
serum, hormones (gluco- and mineralocorticoids),
gonadotropins, growth factors, interleukin-6, and other
cytokines. It plays roles in sodium retention and
potassium elimination in the kidney, nutrient transport,
salt sensitivity, memory consolidation, and cardiac
repolarization. A common SGK1 variant is associated with
increased blood pressure and body weight. SGK1 may also
contribute to tumor growth, neurodegeneration, fibrosing
disease, and ischemia.
Length = 325
Score = 56.9 bits (137), Expect = 2e-08
Identities = 62/269 (23%), Positives = 105/269 (39%), Gaps = 56/269 (20%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYYQA 448
+G G FG V+L ++K + + YAVK +L++ A L + + +H++
Sbjct: 3 IGKGSFGKVLLARHKAEEKFYAVK--------------VLQKKAILKKKEEKHIMSERNV 48
Query: 449 WFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPRTLRQ 508
+ F L FS + A + ++Q E C R
Sbjct: 49 LLKNVKHPF----------LVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRA 98
Query: 509 VFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKF 568
F + +I L ++H I++RDL P NI D++ I + DFGL K
Sbjct: 99 RFYA-------------AEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCK- 144
Query: 569 LKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFEL 628
E ++ + T GT Y APE+ P D D + LG V +E+
Sbjct: 145 ---ENIEHNGTTST-----------FCGTPEYLAPEVLHKQP-YDRTVDWWCLGAVLYEM 189
Query: 629 WH---PFSTAMERQIVLSDLKQKGELPPS 654
+ PF + ++ + L + +L P+
Sbjct: 190 LYGLPPFYSRNTAEMYDNILNKPLQLKPN 218
>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase
adapter protein. Protein Kinase family, STE20-related
kinase adapter protein (STRAD) subfamily, pseudokinase
domain. The STRAD subfamily is part of a larger
superfamily that includes the catalytic domains of
serine/threonine kinases (STKs), protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
pseudokinase domain shows similarity to protein kinases
but lacks crucial residues for catalytic activity. STRAD
forms a complex with the scaffolding protein MO25, and
the STK, LKB1, resulting in the activation of the
kinase. In the complex, LKB1 phosphorylates and
activates adenosine monophosphate-activated protein
kinases (AMPKs), which regulate cell energy metabolism
and cell polarity. LKB1 is a tumor suppressor linked to
the rare inherited disease, Peutz-Jeghers syndrome,
which is characterized by a predisposition to benign
polyps and hyperpigmentation of the buccal mucosa. There
are two forms of STRAD, alpha and beta, that complex
with LKB1 and MO25. The structure of STRAD-alpha is
available and shows that this protein binds ATP, has an
ordered activation loop, and adopts a closed
conformation typical of fully active protein kinases. It
does not possess activity due to nonconservative
substitutions of essential catalytic residues. ATP
binding enhances the affinity of STRAD for MO25. The
conformation of STRAD-alpha stabilized through ATP and
MO25 may be needed to activate LKB1.
Length = 314
Score = 56.6 bits (137), Expect = 3e-08
Identities = 65/361 (18%), Positives = 118/361 (32%), Gaps = 101/361 (27%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYYQA 448
H+ K AVKKI L S + +E+ T +LQH +++ Y +
Sbjct: 10 FEDLMIVHLAKHKP--TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTS 67
Query: 449 WFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY-----CP 503
+ + + LY+ C
Sbjct: 68 F----------------------------------------IVDSELYVVSPLMAYGSCE 87
Query: 504 RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDF 563
L+ F + + + + ++ L +IH +G IHR + ++I + +
Sbjct: 88 DLLKTHFP--EGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLS-- 143
Query: 564 GLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI-EQGWPKIDEKADMYSLG 622
GL + + + + D V + +PE+ +Q +EK+D+YS+G
Sbjct: 144 GLRYSVSMIKHGKRQRVVHDF------PKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVG 197
Query: 623 IVFFELWH---PFS----TAMERQIV----------------LSDLKQKGE--------- 650
I EL + PF T M + V + Q
Sbjct: 198 ITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRD 257
Query: 651 -LPPSWVAKFSEQ-----ESLLRRLMSPSPSDRPSATELLQDALPPQMEYELLDNILRMM 704
+ + FSE E L+R P RPSA++LL + Q + ++L ++
Sbjct: 258 SVDHPYTRTFSEHFHQFVELCLQR----DPESRPSASQLLNHSFFKQCK-RRNTSLLDLL 312
Query: 705 H 705
Sbjct: 313 K 313
>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Src kinase subfamily; catalytic (c) domain. Src
subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr,
Fyn, Yrk, and Yes. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Src (or c-Src) proteins are cytoplasmic (or
non-receptor) tyr kinases which are anchored to the
plasma membrane. They contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. They were identified as the first
proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Src kinases are overexpressed in a
variety of human cancers, making them attractive targets
for therapy. They are also implicated in acute
inflammatory responses and osteoclast function. Src,
Fyn, Yes, and Yrk are widely expressed, while Blk, Lck,
Hck, Fgr, and Lyn show a limited expression pattern.
Length = 261
Score = 55.8 bits (135), Expect = 3e-08
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 21/105 (20%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLD--QDAAFPTDT 584
QI EG+A++ + IHRDL NI KI DFGLA+ ++ ++ + A FP
Sbjct: 111 QIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIK- 169
Query: 585 GGVSVDGTGQVGTYFYTAPE-IEQGWPKIDEKADMYSLGIVFFEL 628
+TAPE G + K+D++S GI+ E+
Sbjct: 170 ---------------WTAPEAANYG--RFTIKSDVWSFGILLTEI 197
>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine
Kinase, HER4. Protein Tyrosine Kinase (PTK) family;
HER4 (ErbB4); catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER4 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands that bind HER4 fall into two groups,
the neuregulins (or heregulins) and some EGFR (HER1)
ligands including betacellulin, HBEGF, and epiregulin.
All four neuregulins (NRG1-4) interact with HER4. Upon
ligand binding, HER4 forms homo- or heterodimers with
other HER proteins. HER4 is essential in embryonic
development. It is implicated in mammary gland, cardiac,
and neural development. As a postsynaptic receptor of
NRG1, HER4 plays an important role in synaptic
plasticity and maturation. The impairment of NRG1/HER4
signaling may contribute to schizophrenia.
Length = 303
Score = 56.2 bits (135), Expect = 3e-08
Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 30/228 (13%)
Query: 506 LRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGL 565
L V E D+ +L + QI +G+ ++ + ++HRDL N+ + N +KI DFGL
Sbjct: 96 LDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGL 155
Query: 566 AKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVF 625
A+ L+ ++ + +A D G + + + A E + K ++D++S G+
Sbjct: 156 ARLLEGDEKEYNA----DGGKMPIK---------WMALECIH-YRKFTHQSDVWSYGVTI 201
Query: 626 FELW----HPFSTAMERQIVLSDLKQKGE-LPPSWVAKFSEQESLLRRLMSPSPSDRPSA 680
+EL P+ R+I DL +KGE LP + +++ M + S RP
Sbjct: 202 WELMTFGGKPYDGIPTREI--PDLLEKGERLPQPPICTIDVYMVMVKCWMIDADS-RPKF 258
Query: 681 TELLQD----ALPPQMEYELLDNILRMMHSSEDTSIYDKVVSSIFDEE 724
EL + A PQ Y ++ RM S + S K ++ DEE
Sbjct: 259 KELAAEFSRMARDPQ-RYLVIQGDDRMKLPSPNDS---KFFQNLLDEE 302
>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase alpha.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) alpha isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKalpha is expressed
ubiquitously in many tissues. It plays a role in the
regulation of peripheral actin reorganization and
neurite outgrowth. It may also play a role in the
transferrin iron uptake pathway.
Length = 332
Score = 56.6 bits (136), Expect = 3e-08
Identities = 75/306 (24%), Positives = 124/306 (40%), Gaps = 76/306 (24%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
DFE L+ +G G FG V + K K + +A+K + + +L+ T + +
Sbjct: 2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWE--------MLKRAETACFREERD 53
Query: 442 VVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEY 501
V+ +GD+ W T F + LY+ M+Y
Sbjct: 54 VL-------------VNGDNQWI--TTLHYAFQ----------------DENNLYLVMDY 82
Query: 502 CP----RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
TL FE D +++A ++V + +H +HRD+ P+NI D
Sbjct: 83 YVGGDLLTLLSKFE--DRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGH 140
Query: 558 IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ----VGTYFYTAPEI----EQGW 609
I++ DFG LKL + DGT Q VGT Y +PEI E G
Sbjct: 141 IRLADFG--SCLKLME----------------DGTVQSSVAVGTPDYISPEILQAMEDGK 182
Query: 610 PKIDEKADMYSLGIVFFELWH---PF--STAMERQIVLSDLKQKGELPPSWVAKFSEQES 664
K + D +SLG+ +E+ + PF + +E + + K++ + P + +
Sbjct: 183 GKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKD 242
Query: 665 LLRRLM 670
L+RRL+
Sbjct: 243 LIRRLI 248
>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine
Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK)
family; Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristylation sites (Srm) and
breast tumor kinase (Brk, also called protein tyrosine
kinase 6); catalytic (c) domains. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Srm and
Brk are a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases in general contain an N-terminal SH4 domain with
a myristoylation site, followed by SH3 and SH2 domains,
a tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr; they are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Srm and
Brk however, lack the N-terminal myristylation sites.
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Brk has been found to be overexpressed
in a majority of breast tumors.
Length = 261
Score = 55.1 bits (133), Expect = 5e-08
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
Q+ EG+A++ Q IHRDL NI K+ DFGLA+ +K + + +
Sbjct: 112 QVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIK------EDVYLSSDKK 165
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFEL 628
+ Y +TAPE K+D++S GI+ +E+
Sbjct: 166 IP---------YKWTAPE-AASHGTFSTKSDVWSFGILLYEM 197
Score = 30.9 bits (70), Expect = 3.6
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQH 441
+F + LG G FG V K + A+K + K L +EV L RL+H+H
Sbjct: 7 EFTLERKLGSGYFGEVWEGLWK-NRVRVAIKIL--KSDDLLKQQDFQKEVQALKRLRHKH 63
Query: 442 VVRYY 446
++ +
Sbjct: 64 LISLF 68
>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 2.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
LATS2 is an essential mitotic regulator responsible for
coordinating accurate cytokinesis completion and
governing the stabilization of other mitotic regulators.
It is also critical in the maintenance of proper
chromosome number, genomic stability, mitotic fidelity,
and the integrity of centrosome duplication.
Downregulation of LATS2 is associated with poor
prognosis in acute lymphoblastic leukemia and breast
cancer.
Length = 381
Score = 56.2 bits (135), Expect = 5e-08
Identities = 76/311 (24%), Positives = 116/311 (37%), Gaps = 82/311 (26%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
F +++ LG G FG V L YA+K +R KD L+R Q HV
Sbjct: 3 FVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKD--------------VLNRNQVAHV 48
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
E D+ W S F ++ LY M+Y
Sbjct: 49 KAERDILAE-------ADNEWVVKLYYS--FQDKDN----------------LYFVMDYI 83
Query: 503 PR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
P + + + F + LA ++ + +H G IHRD+ P+NI D IK+
Sbjct: 84 PGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLT 143
Query: 562 DFGLAK----------FLKLEQLDQDAAFPTDT-GGVSVDGTGQ---------------- 594
DFGL + K + QD+ P+D VS G
Sbjct: 144 DFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRC 203
Query: 595 -----VGTYFYTAPEI--EQGWPKIDEKADMYSLGIVFFELW---HPF--STAMERQIVL 642
VGT Y APE+ +G+ ++ D +S+G++ FE+ PF T E Q+ +
Sbjct: 204 LAHSLVGTPNYIAPEVLLRKGYTQL---CDWWSVGVILFEMLVGQPPFLAPTPTETQLKV 260
Query: 643 SDLKQKGELPP 653
+ + +PP
Sbjct: 261 INWENTLHIPP 271
>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Human Fyn-related kinase (Frk) and similar
proteins; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Frk and
Srk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Frk, also known as Rak, is specifically
expressed in liver, lung, kidney, intestine, mammary
glands, and the islets of Langerhans. Rodent homologs
were previously referred to as GTK (gastrointestinal tyr
kinase), BSK (beta-cell Src-like kinase), or IYK
(intestinal tyr kinase). Studies in mice reveal that Frk
is not essential for viability. It plays a role in the
signaling that leads to cytokine-induced beta-cell death
in Type I diabetes. It also regulates beta-cell number
during embryogenesis and early in life.
Length = 261
Score = 54.7 bits (132), Expect = 7e-08
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 21/105 (20%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
Q+ G+A++ Q IHRDL N+ N K+ DFGLA+ +K +
Sbjct: 111 QVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKED-------------- 156
Query: 587 VSVDGTGQVGTYF---YTAPEIEQGWPKIDEKADMYSLGIVFFEL 628
+ G F +TAPE + + K+D++S GI+ E+
Sbjct: 157 ---IYEAREGAKFPIKWTAPEAAL-YNRFSIKSDVWSFGILLTEI 197
>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine
Kinases, Class EphB Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
class EphB receptors; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). Class EphB receptors bind to transmembrane
ephrin-B ligands. There are six vertebrate EhpB
receptors (EphB1-6), which display promiscuous
interactions with three ephrin-B ligands. One exception
is EphB2, which also interacts with ephrin A5. EphRs
contain an ephrin-binding domain and two fibronectin
repeats extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion. EphBRs play important roles in synapse
formation and plasticity, spine morphogenesis, axon
guidance, and angiogenesis. In the intestinal
epithelium, EphBRs are Wnt signaling target genes that
control cell compartmentalization. They function as
suppressors of color cancer progression.
Length = 269
Score = 54.9 bits (132), Expect = 8e-08
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 16/134 (11%)
Query: 524 LFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTD 583
+ R I G+ ++ +HRDL NI ++ K+ DFGL++F L+ D + PT
Sbjct: 111 MLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRF-----LEDDTSDPTY 165
Query: 584 TGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELW----HPFSTAMERQ 639
T + G++ +TAPE + K +D++S GIV +E+ P+ M Q
Sbjct: 166 TSSLG----GKIPIR-WTAPEAIA-YRKFTSASDVWSYGIVMWEVMSYGERPYWD-MSNQ 218
Query: 640 IVLSDLKQKGELPP 653
V++ ++Q LPP
Sbjct: 219 DVINAIEQDYRLPP 232
>gnl|CDD|222097 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase. This is a family
of class II aminoacyl-tRNA synthetase-like and ATP
phosphoribosyltransferase regulatory subunits.
Length = 308
Score = 55.3 bits (134), Expect = 8e-08
Identities = 53/227 (23%), Positives = 80/227 (35%), Gaps = 43/227 (18%)
Query: 832 SVYR-RAIGHSPPNRYLQGDFDIIGGASALTEAEVLKVTMDIVTRFFHAESCDIH----- 885
V R R G LQ ++IG A +AEV+ + ++ + ES +
Sbjct: 96 PVLRTRPDGLGGSREPLQIGAELIGHAGIEADAEVISLLLEAL------ESLGVKGVTLD 149
Query: 886 LNHGDLLEAIWSWAGIKAEHREKVAELLAMMGSLRPQSSEWKSKWVVIRRQLLQELNLAE 945
L H ++ A+ G+ E + + L K + +LL EL L
Sbjct: 150 LGHVGIVRALLEALGLSEAQEEALRDALQ-------------RKDLPELEELLAELGLDP 196
Query: 946 AVVNRLQTVGLRFCGAADQALPRLRGALPADKPTRKALDEL-----YLRIWRIEKNIYID 1000
A+ + L + G + L LP P ALDEL L + +D
Sbjct: 197 ALADALLAL-PELYGDPE-VLDEALELLP-GSPAAAALDELEALAALLEALGPGVRLTLD 253
Query: 1001 -ALMPPIESYHRNLFFQVFSVKEKYPATLVEGTLLAVGGRYDYLLHR 1046
A + E Y+ L F ++ L A GGRYD L
Sbjct: 254 LAELRGYE-YYTGLVFAAYA--PGAGQAL------ARGGRYDNLGEV 291
>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase N. Serine/Threonine Kinases
(STKs), Protein Kinase N (PKN) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKN subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKN has a
C-terminal catalytic domain that is highly homologous to
PKCs. Its unique N-terminal regulatory region contains
antiparallel coiled-coil (ACC) domains. In mammals,
there are three PKN isoforms from different genes
(designated PKN-alpha, beta, and gamma), which show
different enzymatic properties, tissue distribution, and
varied functions. PKN can be activated by the small
GTPase Rho, and by fatty acids such as arachidonic and
linoleic acids. It is involved in many biological
processes including cytokeletal regulation, cell
adhesion, vesicle transport, glucose transport,
regulation of meiotic maturation and embryonic cell
cycles, signaling to the nucleus, and tumorigenesis.
Length = 324
Score = 55.1 bits (133), Expect = 9e-08
Identities = 77/326 (23%), Positives = 122/326 (37%), Gaps = 96/326 (29%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKD-------KSLPVNDRILREVATLS 435
F L LG G FG V+L + K G YA+K ++ D +SL RI T +
Sbjct: 1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFE---TAN 57
Query: 436 RLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYL 495
+H +V + A F+T ++
Sbjct: 58 SERHPFLVNLF-ACFQT---------------------------------------EDHV 77
Query: 496 YIQMEYCP--RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD 553
MEY + + D F + A +V GL ++H I++RDL +N+ D
Sbjct: 78 CFVMEYAAGGDLMMHIHT--DVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLD 135
Query: 554 ARNDIKIGDFGLAKFLKLEQL---DQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI--EQG 608
+KI DFGL K E + D+ + F GT + APE+ E
Sbjct: 136 TEGFVKIADFGLCK----EGMGFGDRTSTF--------------CGTPEFLAPEVLTETS 177
Query: 609 WPKIDEKADMYSLGIVFFELW---HPFSTAMERQ----IVLSDLKQKGELPPSWVAKFSE 661
+ D + LG++ +E+ PF E + IV +++ L E
Sbjct: 178 Y---TRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLS-------RE 227
Query: 662 QESLLRRLMSPSPSDRPSATELLQDA 687
S++RRL+ +P R + E +DA
Sbjct: 228 AISIMRRLLRRNPERRLGSGE--KDA 251
>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 8.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK8 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK8
can act as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDK8 phosphorylates cyclin
H, a subunit of the general transcription factor TFIIH,
which results in the inhibition of TFIIH-dependent
phosphorylation of the C-terminal domain (CTD) of RNAP
II, facilitating the inhibition of transcription. It has
also been shown to promote transcription by a mechanism
that is likely to involve RNAP II phosphorylation. CDK8
also functions as a stimulus-specific positive
coregulator of p53 transcriptional responses.
Length = 317
Score = 55.1 bits (132), Expect = 9e-08
Identities = 60/254 (23%), Positives = 101/254 (39%), Gaps = 67/254 (26%)
Query: 389 LGHGGFGHVVLCKNK--LDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYY 446
+G G +GHV K K D R YA+K+I S+ RE+A L L+H +V+
Sbjct: 9 VGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSA----CREIALLRELKHPNVISLQ 64
Query: 447 QAWFETG------VADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
+ + + D+ +W ++ +N+ +Q+
Sbjct: 65 KVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKP------------------VQL- 105
Query: 501 YCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFF----DARN 556
PR + + L QI++G+ ++H ++HRDL P NI R
Sbjct: 106 --PRGMVK--------------SLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERG 149
Query: 557 DIKIGDFGLAKFLK--LEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDE 614
+KI D G A+ L+ L D V T++Y APE+ G +
Sbjct: 150 RVKIADMGFARLFNSPLKPL--------------ADLDPVVVTFWYRAPELLLGARHYTK 195
Query: 615 KADMYSLGIVFFEL 628
D++++G +F EL
Sbjct: 196 AIDIWAIGCIFAEL 209
>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase C. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase C
(TrkC); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkC is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkC
to its ligand, neurotrophin 3 (NT3), results in receptor
oligomerization and activation of the catalytic domain.
TrkC is broadly expressed in the nervous system and in
some non-neural tissues including the developing heart.
NT3/TrkC signaling plays an important role in the
innervation of the cardiac conducting system and the
development of smooth muscle cells. Mice deficient with
NT3 and TrkC have multiple heart defects. NT3/TrkC
signaling is also critical for the development and
maintenance of enteric neurons that are important for
the control of gut peristalsis.
Length = 291
Score = 54.6 bits (131), Expect = 1e-07
Identities = 55/190 (28%), Positives = 76/190 (40%), Gaps = 42/190 (22%)
Query: 389 LGHGGFGHVVL--CKN---KLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVV 443
LG G FG V L C N D AVK LKD +L RE L+ LQH+H+V
Sbjct: 13 LGEGAFGKVFLAECYNLSPTKDKMLVAVKA--LKDPTLAARKDFQREAELLTNLQHEHIV 70
Query: 444 RYYQAWFETGVADFDGDSM------WGSGTLASSTFSNRAASSADVTGQENKLESTYLYI 497
++Y GV DGD + G L ++ + V GQ + +
Sbjct: 71 KFY------GVC-GDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLS 123
Query: 498 QMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
QM H+ QI G+ ++ Q +HRDL N A
Sbjct: 124 QM----------------------LHIASQIASGMVYLASQHFVHRDLATRNCLVGANLL 161
Query: 558 IKIGDFGLAK 567
+KIGDFG+++
Sbjct: 162 VKIGDFGMSR 171
>gnl|CDD|237043 PRK12292, hisZ, ATP phosphoribosyltransferase regulatory subunit;
Provisional.
Length = 391
Score = 55.3 bits (134), Expect = 1e-07
Identities = 69/331 (20%), Positives = 119/331 (35%), Gaps = 77/331 (23%)
Query: 832 SVYR-RAIGHSPPNRYLQGDFDIIGGASALTEAEVLKVTMDIVTRFFHAESCDIHL--NH 888
+V+R + G +LQ ++IG A +AEV+ + ++ + + L H
Sbjct: 106 NVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALK---ALGLPNFTLDLGH 162
Query: 889 GDLLEAIWSWAGIKAEHREKVAELLAMMGSLRPQSSEWKSKWVVIRRQLLQELNLAEAVV 948
L A+ AG+ E E + LA +K V +L+ +L+E +
Sbjct: 163 VGLFRALLEAAGLSEELEEVLRRALA-------------NKDYVALEELVL--DLSEELR 207
Query: 949 NRLQTVGLRFCGAADQALPRLRG---------ALPADKPTRKALDELYLRIWRI------ 993
+ L ALPRLRG L P ++ALDEL +
Sbjct: 208 DALL------------ALPRLRGGREVLEEARKLLPSLPIKRALDELE-ALAEALEKYGY 254
Query: 994 EKNIYID-ALMPPIESYHRNLFFQVFSVKEKYPATLVEGTLLAVGGRYDYLLHRMWDREY 1052
+ +D L+ + Y+ + F+ + G +A GGRYD LL + R
Sbjct: 255 GIPLSLDLGLLRHL-DYYTGIVFEGY--------VDGVGNPIASGGRYDDLL-GRFGR-- 302
Query: 1053 VGYASRTNPPSGVGASLALETIIQHYPVDFKPVRNEAGTSVLVCSRGGGGLLVERMELVA 1112
G SL L+ +++ R + V+ L +
Sbjct: 303 --------ARPATGFSLDLDRLLELQLELPVEARKDL---VIAPDSEA---LAAALAAAQ 348
Query: 1113 ELWEENIKAQFVPVPDPSLTEQYEYASEHDI 1143
EL ++ + +P + + EYA + I
Sbjct: 349 ELRKKGEIVV-LALPGRNFEDAREYARDRQI 378
>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase,
Abelson kinase. Protein Tyrosine Kinase (PTK) family;
Abelson (Abl) kinase; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Abl (or
c-Abl) is a ubiquitously-expressed cytoplasmic (or
nonreceptor) tyr kinase that contains SH3, SH2, and tyr
kinase domains in its N-terminal region, as well as
nuclear localization motifs, a putative DNA-binding
domain, and F- and G-actin binding domains in its
C-terminal tail. It also contains a short autoinhibitory
cap region in its N-terminus. Abl is normally inactive
and requires phosphorylation and myristoylation for
activation. Abl function depends on its subcellular
localization. In the cytoplasm, Abl plays a role in cell
proliferation and survival. In response to DNA damage or
oxidative stress, Abl is transported to the nucleus
where it induces apoptosis. In chronic myelogenous
leukemia (CML) patients, an aberrant translocation
results in the replacement of the first exon of Abl with
the BCR (breakpoint cluster region) gene. The resulting
BCR-Abl fusion protein is constitutively active and
associates into tetramers, resulting in a hyperactive
kinase sending a continuous signal. This leads to
uncontrolled proliferation, morphological transformation
and anti-apoptotic effects. BCR-Abl is the target of
selective inhibitors, such as imatinib (Gleevec), used
in the treatment of CML. Abl2, also known as ARG
(Abelson-related gene), is thought to play a cooperative
role with Abl in the proper development of the nervous
system. The Tel-ARG fusion protein, resulting from
reciprocal translocation between chromosomes 1 and 12,
is associated with acute myeloid leukemia (AML). The TEL
gene is a frequent fusion partner of other tyr kinase
oncogenes, including Tel/Abl, Tel/PDGFRbeta, and
Tel/Jak2, found in patients with leukemia and
myeloproliferative disorders.
Length = 263
Score = 53.7 bits (129), Expect = 2e-07
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 31/168 (18%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
QI + ++ + IHRDL N + +K+ DFGL++ + +
Sbjct: 112 QISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY------------ 159
Query: 587 VSVDGTGQVGTYF---YTAPEIEQGWPKIDEKADMYSLGIVFFEL----WHPFSTAMERQ 639
T G F +TAPE + K K+D+++ G++ +E+ P+ ++
Sbjct: 160 -----TAHAGAKFPIKWTAPE-SLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP-GIDLS 212
Query: 640 IVLSDLKQ--KGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQ 685
V L++ + E P K E L+R +PSDRPS E+ Q
Sbjct: 213 QVYELLEKGYRMERPEGCPPKVYE---LMRACWQWNPSDRPSFAEIHQ 257
>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
alpha. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, alpha isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
PKC-alpha is expressed in many tissues and is associated
with cell proliferation, apoptosis, and cell motility.
It plays a role in the signaling of the growth factors
PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha
have been detected in many transformed cell lines and
several human tumors. In addition, PKC-alpha is required
for HER2 dependent breast cancer invasion.
Length = 323
Score = 54.2 bits (130), Expect = 2e-07
Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 29/190 (15%)
Query: 495 LYIQMEYCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD 553
LY MEY L + F + A +I GL +H +GII+RDL +N+ D
Sbjct: 76 LYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLD 135
Query: 554 ARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQ---VGTYFYTAPEIEQGWP 610
+ IKI DFG+ K E + VDG GT Y APEI P
Sbjct: 136 SEGHIKIADFGMCK----EHM--------------VDGVTTRTFCGTPDYIAPEIIAYQP 177
Query: 611 KIDEKADMYSLGIVFFELWH---PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLR 667
+ D ++ G++ +E+ PF E ++ S ++ P S ++K E S+ +
Sbjct: 178 -YGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKS-LSK--EAVSICK 233
Query: 668 RLMSPSPSDR 677
LM+ PS R
Sbjct: 234 GLMTKHPSKR 243
>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine
Kinases, Lymphocyte-specific kinase and Blk. Protein
Tyrosine Kinase (PTK) family; Lck and Blk kinases;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lck (lymphocyte-specific
kinase) and Blk are members of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) tyr
kinases. Src kinases contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Lck is expressed in T-cells and natural
killer (NK) cells. It plays a critical role in T-cell
maturation, activation, and T-cell receptor (TCR)
signaling. Lck phosphorylates ITAM (immunoreceptor tyr
activation motif) sequences on several subunits of TCRs,
leading to the activation of different second messenger
cascades. Phosphorylated ITAMs serve as binding sites
for other signaling factor such as Syk and ZAP-70,
leading to their activation and propagation of
downstream events. In addition, Lck regulates
drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Blk is expressed specifically in B-cells. It is involved
in pre-BCR (B-cell receptor) signaling.
Length = 260
Score = 53.7 bits (129), Expect = 2e-07
Identities = 52/170 (30%), Positives = 75/170 (44%), Gaps = 30/170 (17%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKL-EQLDQDAA-FPTDT 584
QI EG+A I + IHRDL NI KI DFGLA+ ++ E ++ A FP
Sbjct: 110 QIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIK- 168
Query: 585 GGVSVDGTGQVGTYFYTAPE-IEQGWPKIDEKADMYSLGIVFFELWH----PFSTAMERQ 639
+TAPE I G I K+D++S GI+ E+ P+ M
Sbjct: 169 ---------------WTAPEAINYGTFTI--KSDVWSFGILLTEIVTYGRIPYP-GMTNP 210
Query: 640 IVLSDLKQKGELP-PSWVAKFSEQESLLRRLMSPSPSDRPSATELLQDAL 688
V+ +L++ +P P E L+R P +RP+ E L+ L
Sbjct: 211 EVIQNLERGYRMPRPDNCP--EELYELMRLCWKEKPEERPT-FEYLRSVL 257
>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine
Kinases, Class EphA Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
most class EphA receptors including EphA3, EphA4, EphA5,
and EphA7, but excluding EphA1, EphA2 and EphA10;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EphRs comprise the
largest subfamily of receptor tyr kinases (RTKs). In
general, class EphA receptors bind GPI-anchored ephrin-A
ligands. There are ten vertebrate EphA receptors
(EphA1-10), which display promiscuous interactions with
six ephrin-A ligands. One exception is EphA4, which also
binds ephrins-B2/B3. EphRs contain an ephrin-binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). Ephrin/EphR interaction mainly results in
cell-cell repulsion or adhesion, making it important in
neural development and plasticity, cell morphogenesis,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis. EphARs and ephrin-A
ligands are expressed in multiple areas of the
developing brain, especially in the retina and tectum.
They are part of a system controlling retinotectal
mapping.
Length = 267
Score = 53.4 bits (128), Expect = 2e-07
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 18/134 (13%)
Query: 524 LFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTD 583
+ R I G+ ++ G +HRDL NI ++ K+ DFGL++ L + D +AA+ T
Sbjct: 111 MLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVL---EDDPEAAYTTR 167
Query: 584 TGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELW----HPFSTAMERQ 639
G + + +TAPE + K +D++S GIV +E+ P+ M Q
Sbjct: 168 GGKIPIR---------WTAPEAIA-YRKFTSASDVWSYGIVMWEVMSYGERPYWE-MSNQ 216
Query: 640 IVLSDLKQKGELPP 653
V+ +++ LP
Sbjct: 217 DVIKAIEEGYRLPA 230
>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase,
Cell Division Cycle 2-like 6. Serine/Threonine Kinases
(STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDC2L6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDC2L6 is also called CDK8-like and was
previously referred to as CDK11. However, this is a
confusing nomenclature as CDC2L6 is distinct from
CDC2L1, which is represented by the two protein products
from its gene, called CDK11(p110) and CDK11(p58), as
well as the caspase-processed CDK11(p46). CDK11(p110),
CDK11(p58), and CDK11(p46)do not belong to this
subfamily. CDC2L6 is an associated protein of Mediator,
a multiprotein complex that provides a platform to
connect transcriptional and chromatin regulators and
cofactors, in order to activate and mediate RNA
polymerase II transcription. CDC2L6 is localized mainly
in the nucleus amd exerts an opposing effect to CDK8 in
VP16-dependent transcriptional activation by being a
negative regulator.
Length = 317
Score = 53.9 bits (129), Expect = 2e-07
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 67/254 (26%)
Query: 389 LGHGGFGHVVLCKNK--LDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYY 446
+G G +GHV K K D + YA+K+I S+ RE+A L L+H +V+
Sbjct: 9 VGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSA----CREIALLRELKHPNVIALQ 64
Query: 447 QAWFETG------VADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
+ + + D+ +W ++ +N+ +Q+
Sbjct: 65 KVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKP------------------MQL- 105
Query: 501 YCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFF----DARN 556
PR++ + L QI++G+ ++H ++HRDL P NI R
Sbjct: 106 --PRSMVK--------------SLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERG 149
Query: 557 DIKIGDFGLAKFLK--LEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDE 614
+KI D G A+ L+ L D V T++Y APE+ G +
Sbjct: 150 RVKIADMGFARLFNSPLKPL--------------ADLDPVVVTFWYRAPELLLGARHYTK 195
Query: 615 KADMYSLGIVFFEL 628
D++++G +F EL
Sbjct: 196 AIDIWAIGCIFAEL 209
>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine
Kinases, Apoptosis-associated tyrosine kinases. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase (Aatyk) subfamily; catalytic (c) domain.
The Aatyk subfamily is also referred to as the lemur
tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1
(Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Aatyk proteins are mostly receptor tyr kinases (RTKs)
containing a transmembrane segment and a long C-terminal
cytoplasmic tail with a catalytic domain. Aatyk1 does
not contain a transmembrane segment and is a cytoplasmic
(or nonreceptor) kinase. Aatyk proteins are classified
as tyr kinases based on overall sequence similarity and
the phylogenetic tree. However, analysis of catalytic
residues suggests that Aatyk proteins may be
multispecific kinases, functioning also as
serine/threonine kinases. They are involved in neural
differentiation, nerve growth factor (NGF) signaling,
apoptosis, and spermatogenesis.
Length = 269
Score = 53.0 bits (127), Expect = 3e-07
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 33/213 (15%)
Query: 490 LESTYLYIQMEYCP-----RTLR--QVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIH 542
+ES + +E+CP LR + + K++ + ++ GL +H IH
Sbjct: 65 IESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMA-QKDVLQRMACEVASGLLWLHQADFIH 123
Query: 543 RDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTA 602
DL N A +KIGD+GLA LEQ +D D V + + A
Sbjct: 124 SDLALRNCQLTADLSVKIGDYGLA----LEQYPEDYYITKDCHAVPLR---------WLA 170
Query: 603 PEIEQGW------PKIDEKADMYSLGIVFFELW----HPFSTAMERQIVLSDLK-QKGEL 651
PE+ + +K++++SLG+ +EL+ P+ + Q++ ++ Q +L
Sbjct: 171 PELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKL 230
Query: 652 P-PSWVAKFSEQESLLRRLMSPSPSDRPSATEL 683
P P K+S++ + + P RP+A E+
Sbjct: 231 PKPQLDLKYSDRWYEVMQFCWLDPETRPTAEEV 263
>gnl|CDD|226228 COG3705, HisZ, ATP phosphoribosyltransferase involved in histidine
biosynthesis [Amino acid transport and metabolism].
Length = 390
Score = 53.9 bits (130), Expect = 3e-07
Identities = 62/279 (22%), Positives = 98/279 (35%), Gaps = 33/279 (11%)
Query: 773 HLEIEPMYLLGDCPQFKRNTVKLLTHGGDLLELSHELRLPFIRWAISNQKSSFKRYE-IS 831
LE L G +R KL G L L + +P R + + R
Sbjct: 43 TLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFTIPVARIHATLLAGTPLRLSYAG 102
Query: 832 SVYRRAIGHS-PPNRYLQGDFDIIGGASALTEAEVLKVTMDIVTRFFHAESCDIHLNHGD 890
V+R G +LQ +++G SA +AEV+ + + + D+ L G
Sbjct: 103 KVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKA---LGLADLKLELGH 159
Query: 891 --LLEAIWSWAGIKAEHREKVAELLAMMGSLRPQSSEWKSKWVVIRRQLLQELNLAEAVV 948
+ A+ + AG+ R ++ K ++ L+ L+ +
Sbjct: 160 AGIFRALLAAAGLPGGWRARLRRAFG-------------DKDLLGLELLVLAAPLSPELR 206
Query: 949 NRLQTVGLRFCGAADQALPRLRGALPADKPTRKALDE---LYLRIWRIEKNIYIDALMPP 1005
RL + L G + L R RG L AL+E L R+ + I +D
Sbjct: 207 GRLSEL-LALLGGRE-VLERARGLLDELMAQGIALNEGRALADIARRLIEKIALDLGRLR 264
Query: 1006 IESYHRNLFFQVFSVKEKYPATLVEGTLLAVGGRYDYLL 1044
Y+ L F ++ LA GGRYD LL
Sbjct: 265 HFDYYTGLVFLAYADGLGDA--------LASGGRYDGLL 295
>gnl|CDD|234331 TIGR03724, arch_bud32, Kae1-associated kinase Bud32. Members of
this protein family are the Bud32 protein associated
with Kae1 (kinase-associated endopeptidase 1) in the
Archaea. In many Archaeal genomes, Kae1 and Bud32 are
fused. The complex is homologous to the Kae1 and Bud32
subunits of the eukaryotic KEOPS complex, an apparently
ancient protein kinase-containing molecular machine
[Unknown function, General].
Length = 199
Score = 51.4 bits (124), Expect = 5e-07
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 497 IQMEYCP-RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDAR 555
I MEY + L+ V E E L R+I + +H GI+H DLT +NI
Sbjct: 74 IVMEYIEGKPLKDVIE-------EGNDELLREIGRLVGKLHKAGIVHGDLTTSNIIVRDD 126
Query: 556 NDIKIGDFGLAKF 568
+ + DFGL K+
Sbjct: 127 -KLYLIDFGLGKY 138
>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional.
Length = 211
Score = 51.4 bits (124), Expect = 5e-07
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 497 IQMEYCP-RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNN-IFFDA 554
I MEY L+ + S + EL+ + R + +H GIIH DLT +N I
Sbjct: 76 IVMEYIEGEPLKDLINSNGMEELELSREIGRLV----GKLHSAGIIHGDLTTSNMILSG- 130
Query: 555 RNDIKIGDFGLAKF 568
I + DFGLA+F
Sbjct: 131 -GKIYLIDFGLAEF 143
>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SGK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
isoforms of SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGKs are
activated by insulin and growth factors via
phosphoinositide 3-kinase and PDK1. They activate ion
channels, ion carriers, and the Na-K-ATPase, as well as
regulate the activity of enzymes and transcription
factors. SGKs play important roles in transport, hormone
release, neuroexcitability, cell proliferation, and
apoptosis.
Length = 323
Score = 52.5 bits (126), Expect = 7e-07
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 37/133 (27%)
Query: 519 ELAWHLFRQ--------------IVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFG 564
EL +HL R+ I L ++H II+RDL P NI D++ + + DFG
Sbjct: 82 ELFFHLQRERSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFG 141
Query: 565 LAKFLKLEQLDQDAAFPTDTGGVSVDGTGQV--GTYFYTAPEIEQGWPKIDEKADMYSLG 622
L K G+ T GT Y APE+ + P D D + LG
Sbjct: 142 LCK-----------------EGIEHSKTTSTFCGTPEYLAPEVLRKQP-YDRTVDWWCLG 183
Query: 623 IVFFELWH---PF 632
V +E+ + PF
Sbjct: 184 AVLYEMLYGLPPF 196
Score = 34.0 bits (78), Expect = 0.38
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVK 412
+G G FG V+L K+K DG+ YAVK
Sbjct: 3 IGKGSFGKVLLAKHKADGKFYAVK 26
>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional.
Length = 267
Score = 51.8 bits (125), Expect = 8e-07
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 34/142 (23%)
Query: 514 DHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNI-FFDARNDIKIGDFGLAKFLKLE 572
+ + RQ+VE L +H IIH D+ N+ + A++ I + D+GL K +
Sbjct: 104 GKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTP 163
Query: 573 QLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKI-----DEKADMYSLGIVFFE 627
D GT Y +PE KI D D +++G++ +E
Sbjct: 164 SC-YD------------------GTLDYFSPE------KIKGHNYDVSFDWWAVGVLTYE 198
Query: 628 LW---HPFSTAMERQIVLSDLK 646
L HPF + ++ L L
Sbjct: 199 LLTGKHPFKEDEDEELDLESLL 220
>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
beta. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, beta isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
The PKC beta isoforms (I and II), generated by
alternative splicing of a single gene, are
preferentially activated by hyperglycemia-induced DAG in
retinal tissues. This is implicated in diabetic
microangiopathy such as ischemia, neovascularization,
and abnormal vasodilator function. PKC-beta also plays
an important role in VEGF signaling. In addition,
glucose regulates proliferation in retinal endothelial
cells via PKC-betaI. PKC-beta is also being explored as
a therapeutic target in cancer. It contributes to tumor
formation and is involved in the tumor host mechanisms
of inflammation and angiogenesis.
Length = 323
Score = 51.9 bits (124), Expect = 9e-07
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 23/187 (12%)
Query: 495 LYIQMEYCPR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD 553
LY MEY L + F + A +I GL +H +GII+RDL +N+ D
Sbjct: 76 LYFVMEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLD 135
Query: 554 ARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKID 613
+ IKI DFG+ K + GV+ GT Y APEI P
Sbjct: 136 SEGHIKIADFGMCKENMWD-------------GVTTKTF--CGTPDYIAPEIIAYQP-YG 179
Query: 614 EKADMYSLGIVFFELWH---PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLM 670
+ D ++ G++ +E+ PF E ++ S ++ P S E ++ + LM
Sbjct: 180 KSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMS---KEAVAICKGLM 236
Query: 671 SPSPSDR 677
+ P R
Sbjct: 237 TKHPGKR 243
>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 7. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK7
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs
to the visual group of GRKs. It is primarily found in
the retina and plays a role in the regulation of opsin
light receptors. GRK7 is located in retinal cone outer
segments and plays an important role in regulating
photoresponse of the cones.
Length = 277
Score = 51.5 bits (123), Expect = 9e-07
Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 33/187 (17%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
QI G+ H+H I++RD+ P N+ D + + ++ D GLA LK G
Sbjct: 103 QITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELK--------------DG 148
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWH---PFSTAMERQIVLS 643
++ T + GT Y APEI + P D +++G +E+ PF E+ +
Sbjct: 149 KTI--TQRAGTNGYMAPEILKEEP-YSYPVDWFAMGCSIYEMVAGRTPFKDHKEK-VAKE 204
Query: 644 DLKQKG------------ELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQDALPPQ 691
+LK++ + + + RL S +D P E + P+
Sbjct: 205 ELKRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDPRKHEFFKTINFPR 264
Query: 692 MEYELLD 698
+E L+
Sbjct: 265 LEAGLIP 271
Score = 32.2 bits (73), Expect = 1.5
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKI---RLKDKS 420
LG GGFG V + K G+ YA KK+ RLK KS
Sbjct: 1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKS 35
>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase B. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase B
(TrkB); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkB is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkB
to its ligands, brain-derived neurotrophic factor (BDNF)
or neurotrophin 4 (NT4), results in receptor
oligomerization and activation of the catalytic domain.
TrkB is broadly expressed in the nervous system and in
some non-neural tissues. It plays important roles in
cell proliferation, differentiation, and survival.
BDNF/Trk signaling plays a key role in regulating
activity-dependent synaptic plasticity. TrkB also
contributes to protection against gp120-induced neuronal
cell death. TrkB overexpression is associated with poor
prognosis in neuroblastoma (NB) and other human cancers.
It acts as a suppressor of anoikis (detachment-induced
apoptosis) and contributes to tumor metastasis.
Length = 288
Score = 51.6 bits (123), Expect = 1e-06
Identities = 65/252 (25%), Positives = 96/252 (38%), Gaps = 59/252 (23%)
Query: 389 LGHGGFGHVVL--CKN---KLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVV 443
LG G FG V L C N + D AVK LKD S RE L+ LQH+H+V
Sbjct: 13 LGEGAFGKVFLAECYNLCPEQDKILVAVKT--LKDASDNARKDFHREAELLTNLQHEHIV 70
Query: 444 RYYQAWFETGVADFDGDSM------WGSGTLASSTFSNRAASSADVTGQENKLESTYLYI 497
++Y E GD + G L + F A + + N+
Sbjct: 71 KFYGVCVE-------GDPLIMVFEYMKHGDL--NKFLRAHGPDAVLMAEGNR-------- 113
Query: 498 QMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARND 557
P L Q H+ +QI G+ ++ Q +HRDL N
Sbjct: 114 -----PAELTQ----------SQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLL 158
Query: 558 IKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKAD 617
+KIGDFG+++ + TD V G P + K ++D
Sbjct: 159 VKIGDFGMSR----------DVYSTDYYRVG----GHTMLPIRWMPPESIMYRKFTTESD 204
Query: 618 MYSLGIVFFELW 629
++SLG+V +E++
Sbjct: 205 VWSLGVVLWEIF 216
>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase
1-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Yeast protein kinase 1
(YPK1)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The YPK1-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
fungal proteins with similarity to the AGC STKs,
Saccharomyces cerevisiae YPK1 and Schizosaccharomyces
pombe Gad8p. YPK1 is required for cell growth and acts
as a downstream kinase in the sphingolipid-mediated
signaling pathway of yeast. It also plays a role in
efficient endocytosis and in the maintenance of cell
wall integrity. Gad8p is a downstream target of Tor1p,
the fission yeast homolog of mTOR. It plays a role in
cell growth and sexual development.
Length = 312
Score = 51.5 bits (123), Expect = 1e-06
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 40/182 (21%)
Query: 511 ESYDHFDKELAWHLFR------QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFG 564
E + H +E + L R +++ L ++H +I+RDL P NI D + I + DFG
Sbjct: 79 ELFHHLQREGRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFG 138
Query: 565 LAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI--EQGWPKIDEKADMYSLG 622
L K L ++ D+ F GT Y APE+ G+ K D ++LG
Sbjct: 139 LCK-LNMKDDDKTNTF--------------CGTPEYLAPELLLGHGYTKA---VDWWTLG 180
Query: 623 IVFFELWH---PF----STAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPS 675
++ +E+ PF M R+I+ L+ P + + + LL L+S P+
Sbjct: 181 VLLYEMLTGLPPFYDENVNEMYRKILQEPLR----FPDGFD---RDAKDLLIGLLSRDPT 233
Query: 676 DR 677
R
Sbjct: 234 RR 235
>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase,
Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lyn is a member of the
Src subfamily of proteins, which are cytoplasmic (or
non-receptor) tyr kinases. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Lyn is
expressed in B lymphocytes and myeloid cells. It
exhibits both positive and negative regulatory roles in
B cell receptor (BCR) signaling. Lyn, as well as Fyn and
Blk, promotes B cell activation by phosphorylating ITAMs
(immunoreceptor tyr activation motifs) in CD19 and in Ig
components of BCR. It negatively regulates signaling by
its unique ability to phosphorylate ITIMs
(immunoreceptor tyr inhibition motifs) in cell surface
receptors like CD22 and CD5. Lyn also plays an important
role in G-CSF receptor signaling by phosphorylating a
variety of adaptor molecules.
Length = 261
Score = 50.4 bits (120), Expect = 2e-06
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 21/105 (20%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLD--QDAAFPTDT 584
QI EG+A+I + IHRDL N+ KI DFGLA+ ++ + + A FP
Sbjct: 111 QIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIK- 169
Query: 585 GGVSVDGTGQVGTYFYTAPE-IEQGWPKIDEKADMYSLGIVFFEL 628
+TAPE I G I K+D++S GI+ +E+
Sbjct: 170 ---------------WTAPEAINFGSFTI--KSDVWSFGILLYEI 197
>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
PBS2-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Polymyxin B
resistance protein 2 (PBS2) from Saccharomyces
cerevisiae, Wis1 from Schizosaccharomyces pombe, and
related proteins. PBS2 and Wis1 are components of
stress-activated MAPK cascades in budding and fission
yeast, respectively. PBS2 is the specific activator of
the MAPK Hog1, which plays a central role in the
response of budding yeast to stress including exposure
to arsenite and hyperosmotic environments. Wis1
phosphorylates and activates the MAPK Sty1 (also called
Spc1 or Phh1), which stimulates a transcriptional
response to a wide range of cellular insults through the
bZip transcription factors Atf1, Pcr1, and Pap1.
Length = 286
Score = 50.6 bits (121), Expect = 2e-06
Identities = 72/317 (22%), Positives = 129/317 (40%), Gaps = 68/317 (21%)
Query: 381 NDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQ 440
++ E L LG G +G V ++ G A+K+IRL+ N +I+ E+ L +
Sbjct: 1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFN-QIIMELDILHKAVSP 59
Query: 441 HVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQME 500
++V +Y A+F G + M G+L A A E+ L
Sbjct: 60 YIVDFYGAFFIEGAVYMCMEYMDA-GSLDKLY----AGGVATEGIPEDVLRRI------- 107
Query: 501 YCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQ-GIIHRDLTPNNIFFDARNDIK 559
+Y +V+GL + + IIHRD+ P N+ + +K
Sbjct: 108 -----------TY-------------AVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVK 143
Query: 560 IGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPE-IEQGWPK----IDE 614
+ DFG++ L S+ T +G Y APE I+ G P
Sbjct: 144 LCDFGVSGNLV----------------ASLAKT-NIGCQSYMAPERIKSGGPNQNPTYTV 186
Query: 615 KADMYSLGIVFFELW---HPFSTAMERQIVLSDLKQ--KGELPPSWVAKFS-EQESLLRR 668
++D++SLG+ E+ +P+ I + L G+ PP+ + +S + + + +
Sbjct: 187 QSDVWSLGLSILEMALGRYPYPPETYANI-FAQLSAIVDGD-PPTLPSGYSDDAQDFVAK 244
Query: 669 LMSPSPSDRPSATELLQ 685
++ P+ RP+ +LL+
Sbjct: 245 CLNKIPNRRPTYAQLLE 261
>gnl|CDD|232978 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltransferase, regulatory
subunit. Apparant second copies of histidyl-tRNA
synthetase, found in Bacillus subtilis, Synechocystis
sp., Aquifex aeolicus, and others, are in fact a
regulatory subunit of ATP phosphoribosyltransferase, and
usually encoded by a gene adjacent to that encoding the
catalytic subunit [Amino acid biosynthesis, Histidine
family].
Length = 313
Score = 50.7 bits (122), Expect = 2e-06
Identities = 66/267 (24%), Positives = 106/267 (39%), Gaps = 43/267 (16%)
Query: 792 TVKLLTHGGDLLELSHELRLPFIRWAIS----NQKSSFKRYEISSVYRRA-IGHSPPNRY 846
KL G +L L ++ P R +S ++ + +V+R G +
Sbjct: 52 LFKLFDQLGRVLGLRPDMTAPIAR-LVSTRLRDRPLPLRLCYAGNVFRTNESGGGRSREF 110
Query: 847 LQGDFDIIGGASALTEAEVLKVTMDIVTRFFHAESCDIHLN--HGDLLEAIWSWAGIKAE 904
Q ++IG +AEV+ + ++ + D + H L+ A+ AG+ E
Sbjct: 111 TQAGVELIGAGGPAADAEVIALLIEALKA---LGLKDFKIELGHVGLVRALLEEAGLPEE 167
Query: 905 HREKVAELLAMMGSLRPQSSEWKSKWVVIRRQLLQELNLAEAVVNRLQTVGLRFCGAADQ 964
RE + E LA K +V +L+ EL L+ V RL + R G ++
Sbjct: 168 AREALREALA-------------RKDLVALEELVAELGLSPEVRERLLAL-PRLRGDGEE 213
Query: 965 ALPRLRGALPADKPTRKALDELYLRIWRI------EKNIYID-ALMPPIESYHRNLFFQV 1017
L R AL + ALDEL + + E+ I +D L+ Y+ L F+
Sbjct: 214 VLEEAR-ALAGSETAEAALDELE-AVLELLEARGVEEYISLDLGLVRGY-HYYTGLIFEG 270
Query: 1018 FSVKEKYPATLVEGTLLAVGGRYDYLL 1044
++ P LA GGRYD LL
Sbjct: 271 YAPGLGAP--------LAGGGRYDELL 289
>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine
Kinase, HER2. Protein Tyrosine Kinase (PTK) family;
HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER2 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER2 does not bind to any known EGFR
subfamily ligands, but contributes to the kinase
activity of all possible heterodimers. It acts as the
preferred partner with other ligand-bound EGFR proteins
and functions as a signal amplifier, with the HER2-HER3
heterodimer being the most potent pair in mitogenic
signaling. HER2 plays an important role in cell
development, proliferation, survival and motility.
Overexpression of HER2 results in its activation and
downstream signaling, even in the absence of ligand.
HER2 overexpression, mainly due to gene amplification,
has been shown in a variety of human cancers. Its role
in breast cancer is especially well-documented. HER2 is
up-regulated in about 25% of breast tumors and is
associated with increases in tumor aggressiveness,
recurrence and mortality. HER2 is a target for
monoclonal antibodies and small molecule inhibitors,
which are being developed as treatments for cancer. The
first humanized antibody approved for clinical use is
Trastuzumab (Herceptin), which is being used in
combination with other therapies to improve the survival
rates of patients with HER2-overexpressing breast
cancer.
Length = 279
Score = 50.4 bits (120), Expect = 2e-06
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 20/164 (12%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
QI +G++++ ++HRDL N+ + N +KI DFGLA+ L +++ + A
Sbjct: 117 QIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHA-------- 168
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELW----HPFSTAMERQIVL 642
DG G+V + I + ++D++S G+ +EL P+ R+I
Sbjct: 169 ---DG-GKVPIKWMALESILH--RRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREI-- 220
Query: 643 SDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQD 686
DL +KGE P + ++ + RP EL+ +
Sbjct: 221 PDLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVDE 264
>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein
Serine/Threonine Kinases, RPK118 and similar proteins.
Serine/Threonine Kinases (STKs), RPK118-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RPK118-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily show similarity to
human RPK118, which contains an N-terminal Phox homology
(PX) domain, a Microtubule Interacting and Trafficking
(MIT) domain, and a kinase domain containing a long
insert. Also included in the family is human RPK60 (or
ribosomal protein S6 kinase-like 1), which also contains
MIT and kinase domains but lacks a PX domain. RPK118
binds sphingosine kinase, a key enzyme in the synthesis
of sphingosine 1-phosphate (SPP), a lipid messenger
involved in many cellular events. RPK118 may be involved
in transmitting SPP-mediated signaling. RPK118 also
binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118
may be involved in the transport of PRDX3 from the
cytoplasm to its site of function in the mitochondria.
Length = 237
Score = 49.8 bits (119), Expect = 2e-06
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 39/179 (21%)
Query: 512 SYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKL 571
+ + +E ++V L +H +GI+ RDL PNNI D R I++ F ++
Sbjct: 78 KFLNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVE- 136
Query: 572 EQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELW-- 629
+ D +A Y APE+ G + E D +SLG + FEL
Sbjct: 137 DSCDGEAV-----------------ENMYCAPEV-GGISEETEACDWWSLGAILFELLTG 178
Query: 630 ------HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATE 682
HP + + P WV++ E SLL++L+ +P++R A
Sbjct: 179 KTLVECHPSGINTHTTLNI----------PEWVSE--EARSLLQQLLQFNPTERLGAGV 225
>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C.
Serine/Threonine Kinases (STKs), Atypical Protein Kinase
C (aPKC) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
aPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. aPKCs only require
phosphatidylserine (PS) for activation. They contain a
C2-like region, instead of a calcium-binding (C2) region
found in classical PKCs, in their regulatory domain.
There are two aPKC isoforms, zeta and iota. aPKCs are
involved in many cellular functions including
proliferation, migration, apoptosis, polarity
maintenance and cytoskeletal regulation. They also play
a critical role in the regulation of glucose metabolism
and in the pathogenesis of type 2 diabetes.
Length = 329
Score = 50.6 bits (121), Expect = 3e-06
Identities = 57/245 (23%), Positives = 92/245 (37%), Gaps = 52/245 (21%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
+I L +H +GII+RDL +N+ DA IK+ D+G+ K + P DT
Sbjct: 104 EISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCK---------EGIRPGDTTS 154
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELW-------------HP-- 631
GT Y APEI +G D ++LG++ FE+ +P
Sbjct: 155 TF------CGTPNYIAPEILRG-EDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQ 207
Query: 632 ------FSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQ 685
F +E+QI +P S K S S+L+ ++ P +R Q
Sbjct: 208 NTEDYLFQVILEKQI---------RIPRSLSVKAS---SVLKGFLNKDPKERLGC--HPQ 253
Query: 686 DALPPQMEYELLDNI-LRMMHSSEDTSIYDKVVSSIFDEETLDMKHHAGTLRLNRDNTSS 744
+ NI ++ + Y + S D + D + ++L D+
Sbjct: 254 TGFRDIKSHPFFRNIDWDLLEQKQVLPPYKPNIESDRDLDNFDPQFTDEPVQLTPDDPDV 313
Query: 745 IQYSD 749
I D
Sbjct: 314 IARID 318
>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine
Kinases, Tyrosine kinase expressed in hepatocellular
carcinoma and Resting lymphocyte kinase. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase expressed
in hepatocellular carcinoma (Tec) and Resting lymphocyte
kinase (Rlk); catalytic (c) domain. The PTKc family is
part of a larger superfamily, that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tec and
Rlk (also named Txk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. Instead of PH, Rlk
contains an N-terminal cysteine-rich region. In addition
to PH, Tec also contains the Tec homology (TH) domain
with proline-rich and zinc-binding regions. Tec kinases
are expressed mainly by haematopoietic cells. Tec is
more widely-expressed than other Tec subfamily kinases.
It is found in endothelial cells, both B- and T-cells,
and a variety of myeloid cells including mast cells,
erythroid cells, platelets, macrophages and neutrophils.
Rlk is expressed in T-cells and mast cell lines. Tec and
Rlk are both key components of T-cell receptor (TCR)
signaling. They are important in TCR-stimulated
proliferation, IL-2 production and phopholipase C-gamma1
activation.
Length = 256
Score = 49.9 bits (119), Expect = 3e-06
Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 25/155 (16%)
Query: 495 LYIQMEYCPR--TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFF 552
LYI E+ L + + K++ + + + EG+ ++ IHRDL N
Sbjct: 74 LYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLV 133
Query: 553 DARNDIKIGDFGLAKFLKLEQLDQD--AAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWP 610
+ +K+ DFG+ +++ ++ A FP ++ PE+ +
Sbjct: 134 SSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVK----------------WSPPEVFN-FS 176
Query: 611 KIDEKADMYSLGI----VFFELWHPFSTAMERQIV 641
K K+D++S G+ VF E PF ++V
Sbjct: 177 KYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVV 211
>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase,
Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps)
kinase subfamily; catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes kinase is expressed in myeloid, vascular
endothelial, epithelial, and neuronal cells. It plays
important roles in cell growth and differentiation,
angiogenesis, inflammation and immunity, and
cytoskeletal regulation. A recent study implicates Fes
kinase as a tumor suppressor in colorectal cancer.
Length = 252
Score = 49.6 bits (118), Expect = 3e-06
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 24/162 (14%)
Query: 531 GLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVD 590
G+ ++ + IHRDL N +N +KI DFG+++ +++ TGG+
Sbjct: 106 GMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSR-------EEEDGVYASTGGMK-- 156
Query: 591 GTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWHPFS------TAMERQIVLSD 644
Q+ +TAPE + + ++D++S GI+ LW FS + Q
Sbjct: 157 ---QIPVK-WTAPE-ALNYGRYSSESDVWSFGIL---LWEAFSLGAVPYANLSNQQTREA 208
Query: 645 LKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQD 686
++Q LP + L+ R P RPS + + Q+
Sbjct: 209 IEQGVRLPCPELCP-DAVYRLMERCWEYDPGQRPSFSTVHQE 249
>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 2.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 2, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK2 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK2 plays a
role in pro-apoptotic signaling. It is cleaved and
activated by caspases leading to morphological changes
during apoptosis. PAK2 is also activated in response to
a variety of stresses including DNA damage,
hyperosmolarity, serum starvation, and contact
inhibition, and may play a role in coordinating the
stress response. PAK2 also contributes to cancer cell
invasion through a mechanism distinct from that of PAK1.
Length = 296
Score = 49.7 bits (118), Expect = 4e-06
Identities = 48/246 (19%), Positives = 94/246 (38%), Gaps = 58/246 (23%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+ + +G G G V + G+ A+K+I L+ + P + I+ E+ + L++ ++
Sbjct: 21 YTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQ--PKKELIINEILVMKELKNPNI 78
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
V + ++ + G E L++ MEY
Sbjct: 79 VNFLDSF---------------------------------LVGDE-------LFVVMEYL 98
Query: 503 PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
+ D+ + R+ ++ L +H +IHRD+ +N+ +K+ D
Sbjct: 99 AGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTD 158
Query: 563 FGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLG 622
FG + EQ + + VGT ++ APE+ K D++SLG
Sbjct: 159 FGFCAQITPEQSKR---------------STMVGTPYWMAPEVVTR-KAYGPKVDIWSLG 202
Query: 623 IVFFEL 628
I+ E+
Sbjct: 203 IMAIEM 208
>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase A. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase A
(TrkA); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkA is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkA
to its ligand, nerve growth factor (NGF), results in
receptor oligomerization and activation of the catalytic
domain. TrkA is expressed mainly in neural-crest-derived
sensory and sympathetic neurons of the peripheral
nervous system, and in basal forebrain cholinergic
neurons of the central nervous system. It is critical
for neuronal growth, differentiation and survival.
Alternative TrkA splicing has been implicated as a
pivotal regulator of neuroblastoma (NB) behavior. Normal
TrkA expression is associated with better NB prognosis,
while the hypoxia-regulated TrkAIII splice variant
promotes NB pathogenesis and progression. Aberrant TrkA
expression has also been demonstrated in non-neural
tumors including prostate, breast, lung, and pancreatic
cancers.
Length = 280
Score = 49.6 bits (118), Expect = 4e-06
Identities = 53/185 (28%), Positives = 73/185 (39%), Gaps = 33/185 (17%)
Query: 389 LGHGGFGHVVL--CKNKL---DGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVV 443
LG G FG V L C N L D AVK LK+ S RE L+ LQHQH+V
Sbjct: 13 LGEGAFGKVFLAECHNLLPEQDKMLVAVKA--LKEASESARQDFQREAELLTVLQHQHIV 70
Query: 444 RYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC- 502
R+Y GV +G + NR S G + K+ + +
Sbjct: 71 RFY------GVCT-EGRPLLMVFEYMRHGDLNRFLRSH---GPDAKILAGG---EDVAPG 117
Query: 503 PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
TL Q+ + QI G+ ++ +HRDL N +KIGD
Sbjct: 118 QLTLGQML------------AIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGD 165
Query: 563 FGLAK 567
FG+++
Sbjct: 166 FGMSR 170
>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine
Kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; Spleen Tyrosine Kinase (Syk)
subfamily; catalytic (c) domain. The Syk subfamily is
composed of Syk, ZAP-70, Shark, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing two Src homology 2 (SH2) domains
N-terminal to the catalytic tyr kinase domain. They are
involved in the signaling downstream of activated
receptors (including B-cell, T-cell, and Fc receptors)
that contain ITAMs (immunoreceptor tyr activation
motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. Syk is important in B-cell
receptor (BCR) signaling, while Zap-70 is primarily
expressed in T-cells and NK cells, and is a crucial
component in T-cell receptor (TCR) signaling. Syk also
plays a central role in Fc receptor-mediated
phagocytosis in the adaptive immune system. Shark is
exclusively expressed in ectodermally derived epithelia,
and is localized preferentially to the apical surface of
the epithelial cells, it may play a role in a signaling
pathway for epithelial cell polarity.
Length = 257
Score = 48.9 bits (117), Expect = 5e-06
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 53/178 (29%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
Q+ G+A++ + +HRDL N+ R+ KI DFG+++ L
Sbjct: 103 QVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALG---------------- 146
Query: 587 VSVDGTGQVGTYFYTAPEIEQG--WP------------KIDEKADMYSLGIVFFELWHPF 632
G+ +Y A WP K K+D++S G+ LW F
Sbjct: 147 --------AGSDYYRA---TTAGRWPLKWYAPECINYGKFSSKSDVWSYGVT---LWEAF 192
Query: 633 STA------MERQIVLSDLKQKGELP-PSWVAKFSEQESLLRRLMSPSPSDRPSATEL 683
S M+ V++ L+ LP P + E S++ P DRP+ +EL
Sbjct: 193 SYGAKPYGEMKGAEVIAMLESGERLPRPEECPQ--EIYSIMLSCWKYRPEDRPTFSEL 248
Score = 39.6 bits (93), Expect = 0.005
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 389 LGHGGFGHVVLCKNKL-DGRHYAVKKIRLKDKSLPVNDR-ILREVATLSRLQHQHVVR 444
LGHG FG VV + G+ V LK + + + LRE + +++L H +VR
Sbjct: 3 LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVR 60
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 49.6 bits (118), Expect = 6e-06
Identities = 52/202 (25%), Positives = 81/202 (40%), Gaps = 52/202 (25%)
Query: 505 TLRQVFESYDHF--------DKELAWHLFRQ--------------IVEGLAHIHGQGIIH 542
L+ F+++D EL +HL R+ IV L ++H + +++
Sbjct: 59 ALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVY 118
Query: 543 RDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTA 602
RD+ N+ D IKI DFGL K E + A T GT Y A
Sbjct: 119 RDIKLENLMLDKDGHIKITDFGLCK----EGISDGATMKT-----------FCGTPEYLA 163
Query: 603 PEIEQGWPKIDEKADMYSLGIVFFELW---HPF-STAMER---QIVLSDLKQKGELPPSW 655
PE+ + D + LG+V +E+ PF + ER I++ +++ L P
Sbjct: 164 PEVLED-NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSP-- 220
Query: 656 VAKFSEQESLLRRLMSPSPSDR 677
E +SLL L+ P R
Sbjct: 221 -----EAKSLLAGLLKKDPKQR 237
Score = 33.1 bits (75), Expect = 0.96
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIR 415
LG G FG V+L + K GR+YA+K +R
Sbjct: 3 LGKGTFGKVILVREKATGRYYAMKILR 29
>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase,
Interleukin-2-inducible T-cell Kinase. Protein Tyrosine
Kinase (PTK) family; Interleukin-2 (IL-2)-inducible
T-cell kinase (Itk); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Itk (also
known as Tsk or Emt) is a member of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Itk
contains the Tec homology (TH) domain containing one
proline-rich region and a zinc-binding region. Tec
kinases are expressed mainly by haematopoietic cells.
Itk is expressed in T-cells and mast cells, and is
important in their development and differentiation. Of
the three Tec kinases expressed in T-cells, Itk plays
the predominant role in T-cell receptor (TCR) signaling.
It is activated by phosphorylation upon TCR crosslinking
and is involved in the pathway resulting in
phospholipase C-gamma1 activation and actin
polymerization. It also plays a role in the downstream
signaling of the T-cell costimulatory receptor CD28, the
T-cell surface receptor CD2, and the chemokine receptor
CXCR4. In addition, Itk is crucial for the development
of T-helper(Th)2 effector responses.
Length = 256
Score = 48.8 bits (116), Expect = 6e-06
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 25/177 (14%)
Query: 516 FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLD 575
F +E + + EG+A++ +IHRDL N +K+ DFG+ +F+ +Q
Sbjct: 97 FSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQY- 155
Query: 576 QDAAFPTDTGGVSVDGTGQVGTYF---YTAPEIEQGWPKIDEKADMYSLGIVFFELWHPF 632
T GT F +++PE+ + K K+D++S G++ +E++
Sbjct: 156 ----------------TSSTGTKFPVKWSSPEVFS-FSKYSSKSDVWSFGVLMWEVFSEG 198
Query: 633 STAMERQI---VLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQD 686
T E + V+ + L +A S E L++ P DRPS + LL
Sbjct: 199 KTPYENRSNSEVVETINAGFRLYKPRLASQSVYE-LMQHCWKERPEDRPSFSLLLHQ 254
>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase,
Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Yes (or c-Yes) is a
member of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) tyr kinases. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. c-Yes
kinase is the cellular homolog of the oncogenic protein
(v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma
viruses. It displays functional overlap with other Src
subfamily members, particularly Src. It also shows some
unique functions such as binding to occludins,
transmembrane proteins that regulate extracellular
interactions in tight junctions. Yes also associates
with a number of proteins in different cell types that
Src does not interact with, like JAK2 and gp130 in
pre-adipocytes, and Pyk2 in treated pulmonary vein
endothelial cells. Although the biological function of
Yes remains unclear, it appears to have a role in
regulating cell-cell interactions and vesicle
trafficking in polarized cells.
Length = 260
Score = 48.9 bits (116), Expect = 6e-06
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 25/159 (15%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLD--QDAAFPTDT 584
QI +G+A+I IHRDL NI KI DFGLA+ ++ + Q A FP
Sbjct: 110 QIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIK- 168
Query: 585 GGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWH----PFSTAMERQI 640
+TAPE + + K+D++S GI+ EL P+ + R+
Sbjct: 169 ---------------WTAPEAAL-YGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNRE- 211
Query: 641 VLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPS 679
VL +++ +P S E L++ P +RP+
Sbjct: 212 VLEQVERGYRMPCPQGCPESLHE-LMKLCWKKDPDERPT 249
>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 50.2 bits (120), Expect = 6e-06
Identities = 46/203 (22%), Positives = 74/203 (36%), Gaps = 38/203 (18%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPV---NDRILREVATLSR 436
+DF + LG G FG V + V K K+ + + E+ R
Sbjct: 131 KDDFVLGKKLGEGAFGVVY--------KASLVNKQSKKEGKYVLKKATEYGAVEIWMNER 182
Query: 437 LQH--QHVVRYYQAWFETGVADFDGDSMW------GSGTLASSTFSNRAASSADVTGQEN 488
++ + + F V+ D W G TLA S + +
Sbjct: 183 VRRACPNSCADFVYGFLEPVSSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVE------ 236
Query: 489 KLESTYLYIQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPN 548
YL +++ P+ L + + ++ + RQI+ L +H GI+HRD+ P
Sbjct: 237 ----PYLLGKVQDLPKGLER--------ENKIIQTIMRQILFALDGLHSTGIVHRDVKPQ 284
Query: 549 NIFFD-ARNDIKIGDFGLAKFLK 570
NI F KI D G A L+
Sbjct: 285 NIIFSEGSGSFKIIDLGAAADLR 307
>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth
Factor Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR) subfamily; catalytic (c) domain. EGFR
(HER, ErbB) subfamily members include EGFR (HER1,
ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
The EGFR proteins are receptor tyr kinases (RTKs)
containing an extracellular EGF-related ligand-binding
region, a transmembrane helix, and a cytoplasmic region
with a tyr kinase domain and a regulatory C-terminal
tail. Unlike other tyr kinases, phosphorylation of the
activation loop of EGFR proteins is not critical to
their activation. Instead, they are activated by
ligand-induced dimerization, resulting in the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Collectively, they can recognize a variety of
ligands including EGF, TGFalpha, and neuregulins, among
others. All four subfamily members can form homo- or
heterodimers. HER3 contains an impaired kinase domain
and depends on its heterodimerization partner for
activation. EGFR subfamily members are involved in
signaling pathways leading to a broad range of cellular
responses including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. Gain of
function alterations, through their overexpression,
deletions, or point mutations in their kinase domains,
have been implicated in various cancers. These receptors
are targets of many small molecule inhibitors and
monoclonal antibodies used in cancer therapy.
Length = 279
Score = 49.0 bits (117), Expect = 7e-06
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 526 RQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTG 585
QI +G++++ + ++HRDL N+ +KI DFGLAK L D
Sbjct: 116 VQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLL-----------DVDEK 164
Query: 586 GVSVDGTGQVGTYFYTAPE-IEQGWPKIDEKADMYSLGIVFFELW----HPFSTAMERQI 640
+G G+V + A E I K+D++S G+ +EL P+ +I
Sbjct: 165 EYHAEG-GKVPIK-WMALESILHR--IYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEI 220
Query: 641 VLSDLKQKGE 650
DL +KGE
Sbjct: 221 --PDLLEKGE 228
Score = 33.2 bits (76), Expect = 0.79
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 383 FEELQPLGHGGFGHVV--LCKNKLDGRHYAVKKIRLKDKSLPV-NDRILREVATLSRLQH 439
E+++ LG G FG V + + + V L++++ P N IL E ++ + H
Sbjct: 9 LEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDH 68
Query: 440 QHVVRYY 446
HVVR
Sbjct: 69 PHVVRLL 75
>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase,
Hematopoietic cell kinase. Protein Tyrosine Kinase
(PTK) family; Hematopoietic cell kinase (Hck); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Hck is a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Hck is present in myeloid and lymphoid
cells that play a role in the development of cancer. It
may be important in the oncogenic signaling of the
protein Tel-Abl, which induces a chronic myelogenous
leukemia (CML)-like disease. Hck also acts as a negative
regulator of granulocyte colony-stimulating factor
(G-CSF)-induced proliferation of granulocytic
precursors, suggesting a possible role in the
development of acute myeloid leukemia (AML). In
addition, Hck is essential in regulating the
degranulation of polymorphonuclear leukocytes (PMNs).
Genetic polymorphisms affect the expression level of
Hck, which affects PMN mediator release and influences
the development of chronic obstructive pulmonary disease
(COPD).
Length = 260
Score = 48.9 bits (116), Expect = 7e-06
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQL--DQDAAFPTDT 584
QI EG+A I + IHRDL NI A KI DFGLA+ ++ + + A FP
Sbjct: 110 QIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIK- 168
Query: 585 GGVSVDGTGQVGTYFYTAPE-IEQGWPKIDEKADMYSLGIVFFELWH----PFSTAMERQ 639
+TAPE I G I K+D++S GI+ E+ P+ +
Sbjct: 169 ---------------WTAPEAINFGSFTI--KSDVWSFGILLMEIVTYGRIPYPGMSNPE 211
Query: 640 IVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQDAL 688
++ + ++G P E +++ R P +RP+ E +Q L
Sbjct: 212 VIRA--LERGYRMPRPENCPEELYNIMMRCWKNRPEERPT-FEYIQSVL 257
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array
of cell surface receptors, including antigen engagement
of the B-cell receptor (BCR), leads to PH-mediated
membrane translocation of Btk and subsequent
phosphorylation by Src kinase and activation. Btk plays
an important role in the life cycle of B-cells including
their development, differentiation, proliferation,
survival, and apoptosis. Mutations in Btk cause the
primary immunodeficiency disease, X-linked
agammaglobulinaemia (XLA) in humans. Bmx is primarily
expressed in bone marrow and the arterial endothelium,
and plays an important role in ischemia-induced
angiogenesis. It facilitates arterial growth, capillary
formation, vessel maturation, and bone marrow-derived
endothelial progenitor cell mobilization.
Length = 256
Score = 48.7 bits (116), Expect = 7e-06
Identities = 58/250 (23%), Positives = 101/250 (40%), Gaps = 69/250 (27%)
Query: 386 LQPLGHGGFGHVVLCKNKLDGRH-YAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVR 444
L+ LG G FG V K + G++ A+K I+ S D + E + +L H+ +V+
Sbjct: 9 LKELGTGQFGVVKYGKWR--GQYDVAIKMIKEGSMS---EDEFIEEAKVMMKLSHEKLVQ 63
Query: 445 YYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPR 504
Y GV T Q +YI EY
Sbjct: 64 LY------GVC----------------------------TKQRP------IYIVTEYMSN 83
Query: 505 --TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
L + E F + + + EG+A++ + IHRDL N D + +K+ D
Sbjct: 84 GCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSD 143
Query: 563 FGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYF---YTAPEIEQGWPKIDEKADMY 619
FGL++++ LD + T VG+ F ++ PE+ + K K+D++
Sbjct: 144 FGLSRYV----LDDEY-------------TSSVGSKFPVRWSPPEVLL-YSKFSSKSDVW 185
Query: 620 SLGIVFFELW 629
+ G++ +E++
Sbjct: 186 AFGVLMWEVY 195
>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Ephrin Receptor (EphR) subfamily; catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). They can be classified into two classes (EphA
and EphB), according to their extracellular sequences,
which largely correspond to binding preferences for
either GPI-anchored ephrin-A ligands or transmembrane
ephrin-B ligands. Vertebrates have ten EphA and six EhpB
receptors, which display promiscuous ligand interactions
within each class. EphRs contain an ephrin binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. This allows ephrin/EphR dimers to form,
leading to the activation of the intracellular tyr
kinase domain. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). The main effect of ephrin/EphR interaction
is cell-cell repulsion or adhesion. Ephrin/EphR
signaling is important in neural development and
plasticity, cell morphogenesis and proliferation,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis.
Length = 266
Score = 48.9 bits (117), Expect = 7e-06
Identities = 73/321 (22%), Positives = 121/321 (37%), Gaps = 98/321 (30%)
Query: 389 LGHGGFGHVVLCKNKLDGRHY---AVKKIRLKDKSLPVNDRI--LREVATLSRLQHQHVV 443
+G G FG V + KL G+ A+K LK S R+ L E + + + H +++
Sbjct: 12 IGGGEFGEVCRGRLKLPGKKEIDVAIKT--LKAGSSD-KQRLDFLTEASIMGQFDHPNII 68
Query: 444 RYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCP 503
R GV VT +S + I EY
Sbjct: 69 RLE------GV----------------------------VT------KSRPVMIITEY-- 86
Query: 504 RTLRQVFESYDHF----DKELAW----HLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDAR 555
S D F D + + R I G+ ++ +HRDL NI ++
Sbjct: 87 ----MENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSN 142
Query: 556 NDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEK 615
K+ DFGL++ L+ D +A + T G + + +TAPE + K
Sbjct: 143 LVCKVSDFGLSRRLE----DSEATYTTKGGKIPIR---------WTAPEAIA-YRKFTSA 188
Query: 616 ADMYSLGIVFFEL--------WHPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLR 667
+D++S GIV +E+ W M Q V+ ++ LPP + S L
Sbjct: 189 SDVWSFGIVMWEVMSYGERPYWD-----MSNQDVIKAVEDGYRLPPP-----MDCPSALY 238
Query: 668 RLM----SPSPSDRPSATELL 684
+LM ++RP+ ++++
Sbjct: 239 QLMLDCWQKDRNERPTFSQIV 259
>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine
Kinases, Tropomyosin Related Kinases. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase (Trk)
subfamily; catalytic (c) domain. The Trk subfamily
consists of TrkA, TrkB, TrkC, and similar proteins. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Trk
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular region with arrays of
leucine-rich motifs flanked by two cysteine-rich
clusters followed by two immunoglobulin-like domains, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, the nerve growth
factor (NGF) family of neutrotrophins, leads to Trk
receptor oligomerization and activation of the catalytic
domain. Trk receptors are mainly expressed in the
peripheral and central nervous systems. They play
important roles in cell fate determination, neuronal
survival and differentiation, as well as in the
regulation of synaptic plasticity. Altered expression of
Trk receptors is associated with many human diseases.
Length = 280
Score = 49.0 bits (117), Expect = 7e-06
Identities = 43/193 (22%), Positives = 70/193 (36%), Gaps = 43/193 (22%)
Query: 386 LQPLGHGGFGHVVL--CKNKLDGRHYAVKKIR-LKDKSLPVNDR-ILREVATLSRLQHQH 441
+ LG G FG V L C + + ++ LK+ + + RE L+ QH++
Sbjct: 10 KRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHEN 69
Query: 442 VVRYYQAWFETGVADFDGDSMW------GSGTLASSTFSN-RAASSADVTGQENKLESTY 494
+V++Y GV +GD G L S+ A+
Sbjct: 70 IVKFY------GVC-TEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMG----- 117
Query: 495 LYIQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDA 554
TL Q+ + QI G+ ++ Q +HRDL N
Sbjct: 118 --------ELTLSQLL------------QIAVQIASGMVYLASQHFVHRDLATRNCLVGY 157
Query: 555 RNDIKIGDFGLAK 567
+KIGDFG+++
Sbjct: 158 DLVVKIGDFGMSR 170
>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 1.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 1, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK1 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK1 is
important in the regulation of many cellular processes
including cytoskeletal dynamics, cell motility, growth,
and proliferation. Although PAK1 has been regarded
mainly as a cytosolic protein, recent reports indicate
that PAK1 also exists in significant amounts in the
nucleus, where it is involved in transcription
modulation and in cell cycle regulatory events. PAK1 is
also involved in transformation and tumorigenesis. Its
overexpression, hyperactivation and increased nuclear
accumulation is correlated to breast cancer invasiveness
and progression. Nuclear accumulation is also linked to
tamoxifen resistance in breast cancer cells.
Length = 296
Score = 48.6 bits (115), Expect = 9e-06
Identities = 64/309 (20%), Positives = 113/309 (36%), Gaps = 67/309 (21%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+ + +G G G V + G+ A++++ L+ + P + I+ E+ + ++ ++
Sbjct: 22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ--PKKELIINEILVMRENKNPNI 79
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
V Y ++ GD +W + MEY
Sbjct: 80 VNYLDSYLV-------GDELW---------------------------------VVMEYL 99
Query: 503 PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGD 562
+ D+ + R+ ++ L +H +IHRD+ +NI +K+ D
Sbjct: 100 AGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTD 159
Query: 563 FGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLG 622
FG + EQ + + VGT ++ APE+ K D++SLG
Sbjct: 160 FGFCAQITPEQSKR---------------STMVGTPYWMAPEVVTR-KAYGPKVDIWSLG 203
Query: 623 IVFFELWH---PFSTAME-RQIVLSDLKQKGEL--PPSWVAKFSEQESLLRRLMSPSPSD 676
I+ E+ P+ R + L EL P A F + L R +
Sbjct: 204 IMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRD---FLNRCLDMDVEK 260
Query: 677 RPSATELLQ 685
R SA ELLQ
Sbjct: 261 RGSAKELLQ 269
>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase,
C-terminal Src kinase. Protein Tyrosine Kinase (PTK)
family; C-terminal Src kinase (Csk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk is translocated to the membrane via binding to
specific transmembrane proteins, G-proteins, or adaptor
proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Csk is
expressed in a wide variety of tissues. As a negative
regulator of Src, Csk plays a role in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. In
addition, Csk also shows Src-independent functions. It
is a critical component in G-protein signaling, and
plays a role in cytoskeletal reorganization and cell
migration.
Length = 256
Score = 48.1 bits (114), Expect = 1e-05
Identities = 57/253 (22%), Positives = 94/253 (37%), Gaps = 67/253 (26%)
Query: 380 LNDFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQH 439
+ + + LQ +G G FG V+L + G AVK I K+ L E + +++L+H
Sbjct: 5 MKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCI----KNDATAQAFLAEASVMTQLRH 58
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
++V+ E E LYI
Sbjct: 59 SNLVQLLGVIVE---------------------------------------EKGGLYIVT 79
Query: 500 EYCPR-TLRQVFESYDH--FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
EY + +L S + + E + ++ +HRDL N+ N
Sbjct: 80 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDN 139
Query: 557 DIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKA 616
K+ DFGL K +A+ DTG + V +TAPE + K K+
Sbjct: 140 VAKVSDFGLTK---------EASSTQDTGKLPVK---------WTAPEALRE-KKFSTKS 180
Query: 617 DMYSLGIVFFELW 629
D++S GI+ +E++
Sbjct: 181 DVWSFGILLWEIY 193
>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA2
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion, making it important in neural development and
plasticity, cell morphogenesis, cell-fate determination,
embryonic development, tissue patterning, and
angiogenesis. The EphA2 receptor is overexpressed in
tumor cells and tumor blood vessels in a variety of
cancers including breast, prostate, lung, and colon. As
a result, it is an attractive target for drug design
since its inhibition could affect several aspects of
tumor progression.
Length = 268
Score = 48.0 bits (114), Expect = 1e-05
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 524 LFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTD 583
+ R I G+ ++ +HRDL NI ++ + K+ DFGL++ L + D + + T
Sbjct: 112 MLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVL---EDDPEGTYTTS 168
Query: 584 TGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFEL 628
G + + +TAPE + K +D++S GIV +E+
Sbjct: 169 GGKIPIR---------WTAPE-AIAYRKFTSASDVWSFGIVMWEV 203
>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 3.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 3, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK3 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK3 is
highly expressed in the brain. It is implicated in
neuronal plasticity, synapse formation, dendritic spine
morphogenesis, cell cycle progression, neuronal
migration, and apoptosis. Inactivating mutations in the
PAK3 gene cause X-linked non-syndromic mental
retardation, the severity of which depends on the site
of the mutation.
Length = 297
Score = 48.2 bits (114), Expect = 1e-05
Identities = 67/310 (21%), Positives = 117/310 (37%), Gaps = 69/310 (22%)
Query: 383 FEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHV 442
+ + +G G G V + G+ A+K++ L+ + P + I+ E+ + ++ ++
Sbjct: 21 YTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQ--PKKELIINEILVMRENKNPNI 78
Query: 443 VRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYC 502
V Y ++ GD +W + MEY
Sbjct: 79 VNYLDSYLV-------GDELW---------------------------------VVMEYL 98
Query: 503 PR-TLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG 561
+L V + ++A + R+ ++ L +H +IHRD+ +NI +K+
Sbjct: 99 AGGSLTDVVTETCMDEGQIA-AVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLT 157
Query: 562 DFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSL 621
DFG + EQ + + VGT ++ APE+ K D++SL
Sbjct: 158 DFGFCAQITPEQSKR---------------STMVGTPYWMAPEVVTR-KAYGPKVDIWSL 201
Query: 622 GIVFFELWH---PFSTAME-RQIVLSDLKQKGEL--PPSWVAKFSEQESLLRRLMSPSPS 675
GI+ E+ P+ R + L EL P A F + L R +
Sbjct: 202 GIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRD---FLNRCLEMDVD 258
Query: 676 DRPSATELLQ 685
R SA ELLQ
Sbjct: 259 RRGSAKELLQ 268
>gnl|CDD|226168 COG3642, COG3642, Mn2+-dependent serine/threonine protein kinase
[Signal transduction mechanisms].
Length = 204
Score = 46.9 bits (112), Expect = 1e-05
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 497 IQMEYCP-RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDAR 555
I MEY L+ E E L R++ + +H GI+H DLT +NI
Sbjct: 76 IVMEYIEGELLKDALE-------EARPDLLREVGRLVGKLHKAGIVHGDLTTSNIILSGG 128
Query: 556 NDIKIGDFGLAKF 568
I DFGL +F
Sbjct: 129 RIYFI-DFGLGEF 140
>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C iota.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, iota isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-iota is directly implicated in carcinogenesis. It is
critical to oncogenic signaling mediated by Ras and
Bcr-Abl. The PKC-iota gene is the target of
tumor-specific gene amplification in many human cancers,
and has been identified as a human oncogene. In addition
to its role in transformed growth, PKC-iota also
promotes invasion, chemoresistance, and tumor cell
survival. Expression profiling of PKC-iota is a
prognostic marker of poor clinical outcome in several
human cancers. PKC-iota also plays a role in
establishing cell polarity, and has critical embryonic
functions.
Length = 329
Score = 48.1 bits (114), Expect = 2e-05
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 16/102 (15%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
+I L ++H +GII+RDL +N+ D+ IK+ D+G+ K + P DT
Sbjct: 104 EISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCK---------EGLRPGDT-- 152
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFEL 628
+ GT Y APEI +G D ++LG++ FE+
Sbjct: 153 ----TSTFCGTPNYIAPEILRG-EDYGFSVDWWALGVLMFEM 189
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration.
PKB also has a central role in a variety of human
cancers, having been implicated in tumor initiation,
progression, and metastasis.
Length = 323
Score = 47.9 bits (114), Expect = 2e-05
Identities = 49/180 (27%), Positives = 73/180 (40%), Gaps = 44/180 (24%)
Query: 519 ELAWHLFR--------------QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFG 564
EL +HL R +IV L ++H +++RDL N+ D IKI DFG
Sbjct: 81 ELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFG 140
Query: 565 LAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIV 624
L K E + A T GT Y APE+ + D + LG+V
Sbjct: 141 LCK----EGISDGATMKT-----------FCGTPEYLAPEVLED-NDYGRAVDWWGLGVV 184
Query: 625 FFELW---HPF-STAMER---QIVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
+E+ PF + E+ I++ +++ L P E +SLL L+ P R
Sbjct: 185 MYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSP-------EAKSLLAGLLKKDPKQR 237
Score = 35.2 bits (81), Expect = 0.16
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIR 415
LG G FG V+L + K G++YA+K ++
Sbjct: 3 LGKGTFGKVILVREKATGKYYAMKILK 29
>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C zeta.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, zeta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-zeta plays a critical role in activating the glucose
transport response. It is activated by glucose, insulin,
and exercise through diverse pathways. PKC-zeta also
plays a central role in maintaining cell polarity in
yeast and mammalian cells. In addition, it affects actin
remodeling in muscle cells.
Length = 327
Score = 47.7 bits (113), Expect = 2e-05
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 16/102 (15%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
+I L +H +GII+RDL +N+ DA IK+ D+G+ K + P DT
Sbjct: 104 EICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCK---------EGLGPGDTTS 154
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFEL 628
GT Y APEI +G + D ++LG++ FE+
Sbjct: 155 TF------CGTPNYIAPEILRG-EEYGFSVDWWALGVLMFEM 189
>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine
Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK)
family; Fyn and Yrk kinases; catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fyn and
Yrk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Fyn, together with Lck, plays a
critical role in T-cell signal transduction by
phosphorylating ITAM (immunoreceptor tyr activation
motif) sequences on T-cell receptors, ultimately leading
to the proliferation and differentiation of T-cells. In
addition, Fyn is involved in the myelination of neurons,
and is implicated in Alzheimer's and Parkinson's
diseases. Yrk has been detected only in chickens. It is
primarily found in neuronal and epithelial cells and in
macrophages. It may play a role in inflammation and in
response to injury.
Length = 260
Score = 46.1 bits (109), Expect = 4e-05
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 36/156 (23%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLD--QDAAFPTDT 584
Q+ G+A+I IHRDL NI KI DFGLA+ ++ + Q A FP
Sbjct: 110 QVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIK- 168
Query: 585 GGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWHPFSTAMERQIVLSD 644
+TAPE + + K+D++S G I+L++
Sbjct: 169 ---------------WTAPEAAL-YGRFTIKSDVWSFG-----------------ILLTE 195
Query: 645 LKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSA 680
L KG +P + E + R P P D P +
Sbjct: 196 LVTKGRVPYPGMNNREVLEQVERGYRMPCPQDCPIS 231
>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase,
REarranged during Transfection protein. Protein
Tyrosine Kinase (PTK) family; RET (REarranged during
Transfection) protein; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. RET is a
receptor tyr kinase (RTK) containing an extracellular
region with four cadherin-like repeats, a
calcium-binding site, and a cysteine-rich domain, a
transmembrane segment, and an intracellular catalytic
domain. It is part of a multisubunit complex that binds
glial-derived neurotropic factor (GDNF) family ligands
(GFLs) including GDNF, neurturin, artemin, and
persephin. GFLs bind RET along with four GPI-anchored
coreceptors, bringing two RET molecules together,
leading to autophosphorylation, activation, and
intracellular signaling. RET is essential for the
development of the sympathetic, parasympathetic and
enteric nervous systems, and the kidney. RET disruption
by germline mutations causes diseases in humans
including congenital aganglionosis of the
gastrointestinal tract (Hirschsprung's disease) and
three related inherited cancers: multiple endocrine
neoplasia type 2A (MEN2A), MEN2B, and familial medullary
thyroid carcinoma (FMTC).
Length = 290
Score = 46.1 bits (109), Expect = 6e-05
Identities = 73/315 (23%), Positives = 129/315 (40%), Gaps = 57/315 (18%)
Query: 389 LGHGGFGHVVLC-KNKLDGR----HYAVKKIRLKDKSLPVNDR-ILREVATLSRLQHQHV 442
LG G FG VV +L GR AVK LK+ + R +L E L ++ H HV
Sbjct: 8 LGEGEFGKVVKATAFRLKGRAGYTTVAVKM--LKENASSSELRDLLSEFNLLKQVNHPHV 65
Query: 443 VRYYQAWFETG----VADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQ 498
++ Y A + G + ++ + +GS L S +R + + G + S+YL
Sbjct: 66 IKLYGACSQDGPLLLIVEY---AKYGS--LRSFLRESRKVGPSYL-GSDGNRNSSYLDNP 119
Query: 499 MEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDI 558
E T+ + AW QI G+ ++ ++HRDL N+ +
Sbjct: 120 DER-ALTMGDLIS--------FAW----QISRGMQYLAEMKLVHRDLAARNVLVAEGRKM 166
Query: 559 KIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVD--GTGQVGTYFYTAPEIEQGWPKIDEKA 616
KI DFGL++ + ++D+ G + V + + YT ++
Sbjct: 167 KISDFGLSR----DVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTT------------QS 210
Query: 617 DMYSLGIVFFEL----WHPF-STAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRRLMS 671
D++S G++ +E+ +P+ A ER L + E P + E +L+
Sbjct: 211 DVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMERPENCS---EEMYNLMLTCWK 267
Query: 672 PSPSDRPSATELLQD 686
P RP+ ++ ++
Sbjct: 268 QEPDKRPTFADISKE 282
>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase,
Src. Protein Tyrosine Kinase (PTK) family; Src kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Src (or c-Src) is a
cytoplasmic (or non-receptor) tyr kinase, containing an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region with a conserved tyr.
It is activated by autophosphorylation at the tyr kinase
domain, and is negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
c-Src is the vertebrate homolog of the oncogenic protein
(v-Src) from Rous sarcoma virus. Together with other Src
subfamily proteins, it is involved in signaling pathways
that regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Src also play a role in regulating cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Elevated levels of Src kinase activity
have been reported in a variety of human cancers.
Several inhibitors of Src have been developed as
anti-cancer drugs. Src is also implicated in acute
inflammatory responses and osteoclast function.
Length = 262
Score = 45.4 bits (107), Expect = 7e-05
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 32/171 (18%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLD--QDAAFPTDT 584
QI G+A++ +HRDL NI K+ DFGLA+ ++ + Q A FP
Sbjct: 110 QIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIK- 168
Query: 585 GGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWH----PFSTAMERQI 640
+TAPE + + K+D++S GI+ EL P+ + R++
Sbjct: 169 ---------------WTAPEAAL-YGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV 212
Query: 641 VLSDLKQKG---ELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQDAL 688
+ D ++G PP + L+ + P +RP+ E LQ L
Sbjct: 213 L--DQVERGYRMPCPPECPESLHD---LMCQCWRKEPEERPT-FEYLQAFL 257
>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase,
Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK)
family; Spleen tyrosine kinase (Syk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk,
together with Zap-70, form the Syk subfamily of kinases
which are cytoplasmic (or nonreceptor) tyr kinases
containing two Src homology 2 (SH2) domains N-terminal
to the catalytic tyr kinase domain. Syk was first cloned
from the spleen, and its function in hematopoietic cells
is well-established. Syk is involved in the signaling
downstream of activated receptors (including B-cell and
Fc receptors) that contain ITAMs (immunoreceptor tyr
activation motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. More recently, Syk
expression has been detected in other cell types
(including epithelial cells, vascular endothelial cells,
neurons, hepatocytes, and melanocytes), suggesting a
variety of biological functions in non-immune cells. Syk
plays a critical role in maintaining vascular integrity
and in wound healing during embryogenesis. It also
regulates Vav3, which is important in osteoclast
function including bone development. In breast
epithelial cells, where Syk acts as a negative regulator
for epidermal growth factor receptor (EGFR) signaling,
loss of Syk expression is associated with abnormal
proliferation during cancer development suggesting a
potential role as a tumor suppressor. In mice, Syk has
been shown to inhibit malignant transformation of
mammary epithelial cells induced with murine mammary
tumor virus (MMTV).
Length = 257
Score = 45.3 bits (107), Expect = 8e-05
Identities = 56/248 (22%), Positives = 95/248 (38%), Gaps = 60/248 (24%)
Query: 389 LGHGGFGHVV--LCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYY 446
LG G FG V + K K + AVK ++ + + D +LRE + +L + ++VR
Sbjct: 3 LGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRM- 61
Query: 447 QAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM-EYCPRT 505
G+ + ES L +++ E P
Sbjct: 62 -----IGICE---------------------------------AESWMLVMELAELGP-- 81
Query: 506 LRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGL 565
L + + H ++ L Q+ G+ ++ +HRDL N+ ++ KI DFGL
Sbjct: 82 LNKFLQKNKHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGL 141
Query: 566 AKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVF 625
+K A D G+ +Y APE + K K+D++S G++
Sbjct: 142 SK-----------ALGADENYYKAKTHGKWPVKWY-APEC-MNYYKFSSKSDVWSFGVL- 187
Query: 626 FELWHPFS 633
+W FS
Sbjct: 188 --MWEAFS 193
>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional.
Length = 501
Score = 46.2 bits (109), Expect = 9e-05
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 511 ESYDHFDKELAWH---LFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
E++D D+ L + +Q++ + +IH + +IHRD+ NIF + I +GDFG A
Sbjct: 256 EAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFGTAM 315
Query: 568 FLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFE 627
+ E+ D G VGT +PEI G E D++S G++ +
Sbjct: 316 PFEKEREAFD--------------YGWVGTVATNSPEILAG-DGYCEITDIWSCGLILLD 360
Query: 628 L 628
+
Sbjct: 361 M 361
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-alpha is
predominantly expressed in endothelial cells. It is
critical for the regulation of angiogenesis and the
maintenance of vascular integrity. It also plays a role
in adipocyte differentiation. Mice deficient in
PKB-alpha exhibit perinatal morbidity, growth
retardation, reduction in body weight accompanied by
reduced sizes of multiple organs, and enhanced apoptosis
in some cell types. PKB-alpha activity has been reported
to be frequently elevated in breast and prostate
cancers. In some cancer cells, PKB-alpha may act as a
suppressor of metastasis.
Length = 325
Score = 45.4 bits (107), Expect = 1e-04
Identities = 77/320 (24%), Positives = 123/320 (38%), Gaps = 74/320 (23%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDRILREVATLSRLQHQHVVRYYQA 448
LG G FG V+L K K GR+YA+ KI LK + + D EVA L V++ +
Sbjct: 3 LGKGTFGKVILVKEKATGRYYAM-KI-LKKEVIVAKD----EVA--HTLTENRVLQNSRH 54
Query: 449 WFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQMEYCPRTLRQ 508
F T + + T F A+ ++ + ++ E
Sbjct: 55 PFLTALK-------YSFQTHDRLCFVMEYANGGEL----------FFHLSRERV------ 91
Query: 509 VFESYDHFDKELAWHLFRQIVEGLAHIHGQ-GIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
F ++ A +IV L ++H + +++RDL N+ D IKI DFGL K
Sbjct: 92 -------FSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCK 144
Query: 568 FLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFE 627
E + A T GT Y APE+ + D + LG+V +E
Sbjct: 145 ----EGIKDGATMKT-----------FCGTPEYLAPEVLED-NDYGRAVDWWGLGVVMYE 188
Query: 628 LW---HPFSTAMERQ----IVLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR--- 677
+ PF + I++ +++ L P E +SLL L+ P R
Sbjct: 189 MMCGRLPFYNQDHEKLFELILMEEIRFPRTLSP-------EAKSLLSGLLKKDPKQRLGG 241
Query: 678 --PSATELLQDALPPQMEYE 695
A E++Q + ++
Sbjct: 242 GPDDAKEIMQHKFFAGIVWQ 261
>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic
subunit; Provisional.
Length = 340
Score = 45.4 bits (107), Expect = 1e-04
Identities = 60/254 (23%), Positives = 90/254 (35%), Gaps = 70/254 (27%)
Query: 382 DFEELQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVN----DRILREVATLSRL 437
DF ++ LG G FG V+L K + I+ +KS + D + E L+ +
Sbjct: 31 DFNFIRTLGTGSFGRVILATYK--NEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYI 88
Query: 438 QHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYI 497
H V Y F +S YLY+
Sbjct: 89 NHPFCVNLY--------GSFKDES--------------------------------YLYL 108
Query: 498 QMEYC-PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
+E+ F ++ QIV ++ I++RDL P N+ D
Sbjct: 109 VLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDG 168
Query: 557 DIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEI--EQGWPKIDE 614
IK+ DFG AK + DT ++ GT + Y APEI G K
Sbjct: 169 FIKMTDFGFAKVV-------------DTRTYTLCGTPE-----YIAPEILLNVGHGK--- 207
Query: 615 KADMYSLGIVFFEL 628
AD ++LGI +E+
Sbjct: 208 AADWWTLGIFIYEI 221
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 45.6 bits (109), Expect = 1e-04
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 17/88 (19%)
Query: 482 DVTGQENKLESTYLYIQMEYCP-RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGI 540
DV +E I MEY + L+ V E + EL R++ E +A +H GI
Sbjct: 405 DVDPEEKT-------IVMEYIGGKDLKDVLEG----NPELV----RKVGEIVAKLHKAGI 449
Query: 541 IHRDLTPNNIFFDARNDIKIGDFGLAKF 568
+H DLT +N + + + DFGL K+
Sbjct: 450 VHGDLTTSNFIVR-DDRLYLIDFGLGKY 476
>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine
Kinases, Discoidin Domain Receptors. Protein Tyrosine
Kinase (PTK) family; Discoidin Domain Receptor (DDR)
subfamily; catalytic (c) domain. The DDR subfamily
consists of homologs of mammalian DDR1, DDR2, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
DDR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular discoidin homology domain, a
transmembrane segment, an extended juxtamembrane region,
and an intracellular catalytic domain. The binding of
the ligand, collagen, to DDRs results in a slow but
sustained receptor activation. DDRs regulate cell
adhesion, proliferation, and extracellular matrix
remodeling. They have been linked to a variety of human
cancers including breast, colon, ovarian, brain, and
lung. There is no evidence showing that DDRs act as
transforming oncogenes. They are more likely to play a
role in the regulation of tumor growth and metastasis.
Length = 296
Score = 45.0 bits (107), Expect = 1e-04
Identities = 46/206 (22%), Positives = 63/206 (30%), Gaps = 69/206 (33%)
Query: 387 QPLGHGGFGHVVLCKN-----------KLDGRH-----YAVKKIRLKDKSLPVNDRILRE 430
+ LG G FG V LC+ + AVK +R D S + L+E
Sbjct: 11 EKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLR-PDASDNAREDFLKE 69
Query: 431 VATLSRLQHQHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKL 490
V LSRL ++ R L T
Sbjct: 70 VKILSRLSDPNIAR----------------------LLGVCT------------------ 89
Query: 491 ESTYLYIQMEY-CPRTLRQVFESYDHFDKELAW-----------HLFRQIVEGLAHIHGQ 538
L + MEY L Q + + LA ++ QI G+ ++
Sbjct: 90 VDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL 149
Query: 539 GIIHRDLTPNNIFFDARNDIKIGDFG 564
+HRDL N IKI DFG
Sbjct: 150 NFVHRDLATRNCLVGKNYTIKIADFG 175
>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine
Kinase, Epidermal Growth Factor Receptor. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR); catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EGFR
(HER1, ErbB1) is a member of the EGFR (HER, ErbB)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular EGF-related
ligand-binding region, a transmembrane helix, and a
cytoplasmic region with a tyr kinase domain and a
regulatory C-terminal tail. Unlike other tyr kinases,
phosphorylation of the activation loop of EGFR proteins
is not critical to their activation. Instead, they are
activated by ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands for EGFR include EGF, heparin binding
EGF-like growth factor (HBEGF), epiregulin,
amphiregulin, TGFalpha, and betacellulin. Upon ligand
binding, EGFR can form homo- or heterodimers with other
EGFR subfamily members. The EGFR signaling pathway is
one of the most important pathways regulating cell
proliferation, differentiation, survival, and growth.
Overexpression and mutation in the kinase domain of EGFR
have been implicated in the development and progression
of a variety of cancers. A number of monoclonal
antibodies and small molecule inhibitors have been
developed that target EGFR, including the antibodies
Cetuximab and Panitumumab, which are used in combination
with other therapies for the treatment of colorectal
cancer and non-small cell lung carcinoma (NSCLC). The
small molecule inhibitors Gefitinib (Iressa) and
Erlotinib (Tarceva), already used for NSCLC, are
undergoing clinical trials for other types of cancer
including gastrointestinal, breast, head and neck, and
bladder.
Length = 316
Score = 45.0 bits (106), Expect = 1e-04
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 28/211 (13%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
QI +G+ ++ + ++HRDL N+ +KI DFGLAK L ++ + + G
Sbjct: 117 QIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADE----KEYHAEGGK 172
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELW----HPFSTAMERQIVL 642
V + + A E ++D++S G+ +EL P+ +I
Sbjct: 173 VPIK---------WMALESILHR-IYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI-- 220
Query: 643 SDLKQKGE-LPPSWVAKFSEQESLLRRLMSPSPSDRPSATELL----QDALPPQMEYELL 697
S + +KGE LP + +++ M RP EL+ + A PQ Y ++
Sbjct: 221 SSILEKGERLPQPPICTIDVYMIMVKCWMI-DADSRPKFRELIIEFSKMARDPQ-RYLVI 278
Query: 698 DNILRM-MHSSEDTSIYDKVVSSIFDEETLD 727
RM + S D++ Y ++ ++ +D
Sbjct: 279 QGDERMHLPSPTDSNFYRALMDEEDMDDVVD 309
>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 1. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
1 (DDR1) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR1 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR1 binds to all collagens tested to date (types I-IV).
It is widely expressed in many tissues. It is abundant
in the brain and is also found in keratinocytes, colonic
mucosa epithelium, lung epithelium, thyroid follicles,
and the islets of Langerhans. During embryonic
development, it is found in the developing
neuroectoderm. DDR1 is a key regulator of cell
morphogenesis, differentiation and proliferation. It is
important in the development of the mammary gland, the
vasculator and the kidney. DDR1 is also found in human
leukocytes, where it facilitates cell adhesion,
migration, maturation, and cytokine production.
Length = 304
Score = 44.9 bits (106), Expect = 1e-04
Identities = 52/218 (23%), Positives = 82/218 (37%), Gaps = 53/218 (24%)
Query: 374 LPSSRYLNDFEELQPLGHGGFGHVVLCK--------------NKLDGRHY--AVKKIRLK 417
P L F+E LG G FG V LC+ N GR AVK +R
Sbjct: 2 FPRGHLL--FKE--KLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILR-P 56
Query: 418 DKSLPVNDRILREVATLSRLQHQHVVRYYQAWFETG----VADF--DGDSMWGSGTLASS 471
D + + L+EV LSRL+ +++R + + ++ +GD + L+S
Sbjct: 57 DANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDL---NQFLSSH 113
Query: 472 TFSNRAASSADVTGQENKLESTYLYIQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEG 531
++ + D + L + SY H+ QI G
Sbjct: 114 HLDDKEENGNDAVPPAHCLPAI------------------SY-----SSLLHVALQIASG 150
Query: 532 LAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFL 569
+ ++ +HRDL N IKI DFG+++ L
Sbjct: 151 MKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNL 188
>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase,
Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Fer kinase is a member
of the Fes subfamily of proteins which are cytoplasmic
(or nonreceptor) tyr kinases containing an N-terminal
region with FCH (Fes/Fer/CIP4 homology) and coiled-coil
domains, followed by a SH2 domain, and a C-terminal
catalytic domain. Fer kinase is expressed in a wide
variety of tissues, and is found to reside in both the
cytoplasm and the nucleus. It plays important roles in
neuronal polarization and neurite development,
cytoskeletal reorganization, cell migration, growth
factor signaling, and the regulation of cell-cell
interactions mediated by adherens junctions and focal
adhesions. Fer kinase also regulates cell cycle
progression in malignant cells.
Length = 250
Score = 44.6 bits (105), Expect = 1e-04
Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 23/161 (14%)
Query: 531 GLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVD 590
G+A++ + IHRDL N N +KI DFG+++ D G S
Sbjct: 105 GMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSR-------------QEDDGIYSSS 151
Query: 591 GTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWHPFSTAMERQIVLSDLKQKGE 650
G Q+ +TAPE + + ++D++S GI+ LW FS + +++ + + +
Sbjct: 152 GLKQIPIK-WTAPE-ALNYGRYSSESDVWSYGIL---LWETFSLGVCPYPGMTNQQAREQ 206
Query: 651 LPPSWVAKFSEQ-----ESLLRRLMSPSPSDRPSATELLQD 686
+ + ++ +++R P +RP +EL ++
Sbjct: 207 VEKGYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQKE 247
>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine
Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine
Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4);
pseudokinase domain. The PTKc (catalytic domain) family,
to which this subfamily belongs, includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CCK4,
also called protein tyrosine kinase 7 (PTK7), is an
orphan receptor tyr kinase (RTK) containing an
extracellular region with seven immunoglobulin domains,
a transmembrane segment, and an intracellular inactive
pseudokinase domain. Studies in mice reveal that CCK4 is
essential for neural development. Mouse embryos
containing a truncated CCK4 die perinatally and display
craniorachischisis, a severe form of neural tube defect.
The mechanism of action of the CCK4 pseudokinase is
still unknown. Other pseudokinases such as HER3 rely on
the activity of partner RTKs.
Length = 275
Score = 44.8 bits (106), Expect = 1e-04
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 42/178 (23%)
Query: 523 HLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK------FLKLEQLDQ 576
L QI G+ H+ +HRDL N ++ ++K+ L+K + KL
Sbjct: 121 ALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRN--- 177
Query: 577 DAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWH----PF 632
A P + APE Q K+D++S G++ +E++ PF
Sbjct: 178 -ALIPLR----------------WLAPEAVQE-DDFSTKSDVWSFGVLMWEVFTQGELPF 219
Query: 633 STAMERQIVLSDLKQKG-ELPPSWVAKFSEQESLLRRLM----SPSPSDRPSATELLQ 685
+ + VL+ L+ ELP S L +LM + +P DRPS +EL+
Sbjct: 220 YGLSDEE-VLNRLQAGKLELPVP-----EGCPSRLYKLMTRCWAVNPKDRPSFSELVS 271
>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine
Kinase, Zeta-chain-associated protein of 70kDa. Protein
Tyrosine Kinase (PTK) family; Zeta-chain-associated
protein of 70kDa (Zap-70); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Zap-70 is
a member of the Syk subfamily of kinases, which are
cytoplasmic (or nonreceptor) tyr kinases containing two
Src homology 2 (SH2) domains N-terminal to the catalytic
tyr kinase domain. Zap-70 is primarily expressed in
T-cells and NK cells, and is a crucial component in
T-cell receptor (TCR) signaling. Zap-70 binds the
phosphorylated ITAM (immunoreceptor tyr activation
motif) sequences of the activated TCR zeta-chain through
its SH2 domains, leading to its phosphorylation and
activation. It then phosphorylates target proteins,
which propagate the signals to downstream pathways.
Zap-70 is hardly detected in normal peripheral B-cells,
but is present in some B-cell malignancies. It is used
as a diagnostic marker for chronic lymphocytic leukemia
(CLL) as it is associated with the more aggressive
subtype of the disease.
Length = 257
Score = 44.2 bits (104), Expect = 2e-04
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 524 LFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTD 583
L Q+ G+ ++ G+ +HRDL N+ ++ KI DFGL+K L + D+ +
Sbjct: 100 LMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGAD----DSYYKAR 155
Query: 584 TGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWHPFS 633
+ G+ +Y APE + K ++D++S GI +W FS
Sbjct: 156 SA-------GKWPLKWY-APECIN-FRKFSSRSDVWSYGIT---MWEAFS 193
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-gamma is
predominantly expressed in neuronal tissues. Mice
deficient in PKB-gamma show a reduction in brain weight
due to the decreases in cell size and cell number.
PKB-gamma has also been shown to be upregulated in
estrogen-deficient breast cancer cells,
androgen-independent prostate cancer cells, and primary
ovarian tumors. It acts as a key mediator in the genesis
of ovarian cancer.
Length = 328
Score = 44.7 bits (105), Expect = 2e-04
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 22/154 (14%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
+IV L ++H I++RDL N+ D IKI DFGL K E + A T
Sbjct: 103 EIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCK----EGITDAATMKT---- 154
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELW---HPFSTAMERQIVLS 643
GT Y APE+ + D + LG+V +E+ PF ++
Sbjct: 155 -------FCGTPEYLAPEVLED-NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFEL 206
Query: 644 DLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDR 677
L + + P + ++ +SLL L+ P+ R
Sbjct: 207 ILMEDIKFPRTLS---ADAKSLLSGLLIKDPNKR 237
Score = 30.4 bits (68), Expect = 6.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 389 LGHGGFGHVVLCKNKLDGRHYAVKKIR 415
LG G FG V+L + K G++YA+K ++
Sbjct: 3 LGKGTFGKVILVREKASGKYYAMKILK 29
>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase,
Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK)
family; Focal Adhesion Kinase (FAK); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FAK is a
cytoplasmic (or nonreceptor) tyr kinase that contains an
autophosphorylation site and a FERM domain at the
N-terminus, a central tyr kinase domain, proline-rich
regions, and a C-terminal FAT (focal adhesion targeting)
domain. FAK activity is dependent on integrin-mediated
cell adhesion, which facilitates N-terminal
autophosphorylation. Full activation is achieved by the
phosphorylation of its two adjacent A-loop tyrosines.
FAK is important in mediating signaling initiated at
sites of cell adhesions and at growth factor receptors.
Through diverse molecular interactions, FAK functions as
a biosensor or integrator to control cell motility. It
is a key regulator of cell survival, proliferation,
migration and invasion, and thus plays an important role
in the development and progression of cancer. Src binds
to autophosphorylated FAK forming the FAK-Src dual
kinase complex, which is activated in a wide variety of
tumor cells and generates signals promoting growth and
metastasis. FAK is being developed as a target for
cancer therapy.
Length = 270
Score = 44.3 bits (105), Expect = 2e-04
Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 23/195 (11%)
Query: 495 LYIQMEYCPR-TLRQVFESYDHFDKELAWHLF-RQIVEGLAHIHGQGIIHRDLTPNNIFF 552
++I ME P LR + + + L+ Q+ LA++ + +HRD+ N+
Sbjct: 81 VWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLV 140
Query: 553 DARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKI 612
+ + +K+GDFGL+++ L+ ++ + G + + + APE + +
Sbjct: 141 SSPDCVKLGDFGLSRY-----LEDESYYKASKGKLPIK---------WMAPE-SINFRRF 185
Query: 613 DEKADMYSLGIVFFELW----HPFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLRR 668
+D++ G+ +E+ PF ++ V+ ++ GE P SL+ +
Sbjct: 186 TSASDVWMFGVCMWEILMLGVKPFQ-GVKNNDVIGRIEN-GERLPMPPNCPPTLYSLMTK 243
Query: 669 LMSPSPSDRPSATEL 683
+ PS RP TEL
Sbjct: 244 CWAYDPSKRPRFTEL 258
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies
in mice reveal that Chk is not functionally redundant
with Csk and that it plays an important role as a
regulator of immune responses. Chk also plays a role in
neural differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 43.8 bits (103), Expect = 3e-04
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 22/106 (20%)
Query: 528 IVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGV 587
+ EG+ ++ + ++HRDL NI K+ DFGLA+ + D +
Sbjct: 109 VAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARV---------GSMGVDNSKL 159
Query: 588 SVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWHPFS 633
V +TAPE + K K+D++S G++ LW FS
Sbjct: 160 PVK---------WTAPEALKH-KKFSSKSDVWSYGVL---LWEVFS 192
>gnl|CDD|202547 pfam03129, HGTP_anticodon, Anticodon binding domain. This domain is
found in histidyl, glycyl, threonyl and prolyl tRNA
synthetases it is probably the anticodon binding domain.
Length = 93
Score = 40.6 bits (96), Expect = 3e-04
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1093 VLVCSRGGGGLLVERMELVAELWEENIKAQFVPVPDPSLTEQYEYASEHDIKCLVILTDT 1152
V++ L +L EL E I+ + + SL +++ A I +++ +
Sbjct: 3 VVIPLGEKDELEDYAQKLAEELREAGIRVELDDR-NESLGKKFRDADLIGIPFRLVVGEK 61
Query: 1153 GAQKGLVKVRHLDVKKEKEVQRESLVRFLLD 1183
+ G V VR D +++ V E LV L +
Sbjct: 62 ELENGTVTVRDRDTGEKETVSLEELVEKLKE 92
>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional.
Length = 294
Score = 43.4 bits (102), Expect = 4e-04
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 494 YLYIQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFD 553
Y +I +E +++F+ +K+L ++ + ++ L +IH GI H D+ P NI D
Sbjct: 101 YRFILLEKLVENTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVD 160
Query: 554 ARNDIKIGDFGLAKFL 569
N I D+G+A
Sbjct: 161 GNNRGYIIDYGIASHF 176
>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase;
Provisional.
Length = 507
Score = 44.3 bits (104), Expect = 4e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 524 LFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLA 566
+ RQ++ GL +H GI+HRD+ P N+ +KI DFG A
Sbjct: 314 VMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAA 356
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 42.0 bits (99), Expect = 4e-04
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 496 YIQMEYCP-RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIH---GQGIIHRDLTPNNIF 551
Y+ ME+ TL +V +KE + Q+ E LA +H + H DL P NI
Sbjct: 69 YLLMEWIEGETLDEV----SEEEKE---DIAEQLAELLAKLHQLPLLVLCHGDLHPGNIL 121
Query: 552 FDARNDIKIGDFGLAKF 568
D + I D+ A +
Sbjct: 122 VDDGKILGIIDWEYAGY 138
>gnl|CDD|237097 PRK12420, PRK12420, histidyl-tRNA synthetase; Provisional.
Length = 423
Score = 43.6 bits (103), Expect = 6e-04
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 754 LRDYVVQVTKEMFRQHCAKHLEIEPMYLL-------GDCPQFKRNTVKLLTHGGDLLELS 806
LR+ + + +++F ++ K LE + + G + + L G L L
Sbjct: 20 LRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALR 79
Query: 807 HELRLPFIRWAISNQ--KSSFKRYEISSVYRRA-IGHSPPNRYLQGDFDIIGGASALTEA 863
++L +PF + N + FKRYEI V+R I ++Q D DI+G S + EA
Sbjct: 80 YDLTIPFAKVVAMNPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEA 139
Query: 864 EVLKVTMDIVTR 875
E++ + ++ R
Sbjct: 140 ELMSMAFELFRR 151
>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 3. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 3 (FGFR3); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR3 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Many FGFR3 splice
variants have been reported with the IIIb and IIIc
isoforms being the predominant forms. FGFR3 IIIc is the
isoform expressed in chondrocytes, the cells affected in
dwarfism, while IIIb is expressed in epithelial cells.
FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and
FGF23. It is a negative regulator of long bone growth.
In the cochlear duct and in the lens, FGFR3 is involved
in differentiation while it appears to have a role in
cell proliferation in epithelial cells. Germline
mutations in FGFR3 are associated with skeletal
disorders including several forms of dwarfism. Some
missense mutations are associated with multiple myeloma
and carcinomas of the bladder and cervix. Overexpression
of FGFR3 is found in thyroid carcinoma.
Length = 334
Score = 43.1 bits (101), Expect = 7e-04
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 28/185 (15%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
Q+ G+ ++ Q IHRDL N+ N +KI DFGLA+ + + D T G
Sbjct: 142 QVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVH----NIDYYKKTTNGR 197
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKI-DEKADMYSLGIVFFELWHPFSTAMERQIV--LS 643
+ V + APE + ++ ++D++S G++ +E++ + V L
Sbjct: 198 LPVK---------WMAPEAL--FDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELF 246
Query: 644 DLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQDALPPQMEYELLDNILRM 703
L ++G E ++R PS RP+ +L++D LD +L +
Sbjct: 247 KLLKEGHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVED----------LDRVLTV 296
Query: 704 MHSSE 708
+ E
Sbjct: 297 TSTDE 301
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Fes subfamily; catalytic (c) domain. Fes subfamily
members include Fes (or Fps), Fer, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes and Fer kinases play roles in haematopoiesis,
inflammation and immunity, growth factor signaling,
cytoskeletal regulation, cell migration and adhesion,
and the regulation of cell-cell interactions. Fes and
Fer show redundancy in their biological functions.
Length = 251
Score = 42.4 bits (100), Expect = 7e-04
Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 40/206 (19%)
Query: 495 LYIQMEYCP--RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFF 552
+YI ME P L + + + + + G+ ++ + IHRDL N
Sbjct: 67 IYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLV 126
Query: 553 DARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGV--SVDGTGQVGTYFYTAPEIEQGWP 610
N +KI DFG+++ + GG+ DG Q+ +TAPE +
Sbjct: 127 GENNVLKISDFGMSR--------------EEEGGIYTVSDGLKQIPIK-WTAPE-ALNYG 170
Query: 611 KIDEKADMYSLGIVFFELWHPFS------TAMERQIVLSDLKQKGELP-----PSWVAKF 659
+ ++D++S GI+ LW FS M Q ++ +P P + +
Sbjct: 171 RYTSESDVWSYGIL---LWETFSLGDTPYPGMSNQQTRERIESGYRMPAPQLCPEEIYR- 226
Query: 660 SEQESLLRRLMSPSPSDRPSATELLQ 685
L+ + + P +RPS +E+
Sbjct: 227 -----LMLQCWAYDPENRPSFSEIYN 247
>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 2. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 2 (FGFR2); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR2 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. There are many splice
variants of FGFR2 which show differential expression and
binding to FGF ligands. Disruption of either FGFR2 or
FGFR2b is lethal in mice, due to defects in the placenta
or severe impairment of tissue development including
lung, limb, and thyroid, respectively. Disruption of
FGFR2c in mice results in defective bone and skull
development. Genetic alterations of FGFR2 are associated
with many human skeletal disorders including Apert
syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and
Pfeiffer syndrome.
Length = 304
Score = 41.9 bits (98), Expect = 0.001
Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 51/237 (21%)
Query: 495 LYIQMEYCPR-TLRQVFESYDHFDKELAWHLFR----------------QIVEGLAHIHG 537
LY+ +EY + LR+ + E ++ + R Q+ G+ ++
Sbjct: 96 LYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLAS 155
Query: 538 QGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGT 597
Q IHRDL N+ N +KI DFGLA+ + + D T G + V
Sbjct: 156 QKCIHRDLAARNVLVTENNVMKIADFGLARDVN----NIDYYKKTTNGRLPVK------- 204
Query: 598 YFYTAPEIEQGWPKI-DEKADMYSLGIVFFELW----HPF-STAMERQIVLSDLKQKGEL 651
+ APE + ++ ++D++S G++ +E++ P+ +E L + +
Sbjct: 205 --WMAPEAL--FDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDK 260
Query: 652 PPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQDALPPQMEYELLDNILRMMHSSE 708
P + +E ++R PS RP+ +L++D LD IL + + E
Sbjct: 261 PANCT---NELYMMMRDCWHAIPSHRPTFKQLVED----------LDRILTLTTNEE 304
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
PDGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in
the development of a variety of cells. PDGFRs are
expressed in a many cells including fibroblasts,
neurons, endometrial cells, mammary epithelial cells,
and vascular smooth muscle cells. PDGFR signaling is
critical in normal embryonic development, angiogenesis,
and wound healing. PDGFRs transduce mitogenic signals
for connective tissue cells and are important for cell
shape and motility. Kit is important in the development
of melanocytes, germ cells, mast cells, hematopoietic
stem cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. CSF-1R signaling is
critical in the regulation of macrophages and
osteoclasts. Mammalian FLT3 plays an important role in
the survival, proliferation, and differentiation of stem
cells.
Length = 302
Score = 42.1 bits (99), Expect = 0.001
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 495 LYIQMEYC-----PRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNN 549
+ + EYC LR+ ES+ + L Q+ +G+A + + IHRDL N
Sbjct: 114 ILVITEYCCYGDLLNFLRRKRESFLTLEDLL--SFSYQVAKGMAFLASKNCIHRDLAARN 171
Query: 550 IFFDARNDIKIGDFGLAK 567
+ +KI DFGLA+
Sbjct: 172 VLLTHGKIVKICDFGLAR 189
>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine
Kinase, Muscle-specific kinase. Protein Tyrosine Kinase
(PTK) family; Muscle-specific kinase (Musk); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Musk is a receptor tyr kinase (RTK) containing an
extracellular region with four immunoglobulin-like
domains and a cysteine-rich cluster, a transmembrane
segment, and an intracellular catalytic domain. Musk is
expressed and concentrated in the postsynaptic membrane
in skeletal muscle. It is essential for the
establishment of the neuromuscular junction (NMJ), a
peripheral synapse that conveys signals from motor
neurons to muscle cells. Agrin, a large proteoglycan
released from motor neurons, stimulates Musk
autophosphorylation and activation, leading to the
clustering of acetylcholine receptors (AChRs). To date,
there is no evidence to suggest that agrin binds
directly to Musk. Mutations in AChR, Musk and other
partners are responsible for diseases of the NMJ, such
as the autoimmune syndrome myasthenia gravis.
Length = 288
Score = 41.7 bits (98), Expect = 0.001
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 32/168 (19%)
Query: 526 RQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLE---QLDQDAAFPT 582
+Q+ G+A++ + +HRDL N +KI DFGL++ + + ++ A P
Sbjct: 137 KQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPI 196
Query: 583 DTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWHPFSTAME----- 637
+ PE + + ++D+++ G+V LW FS M+
Sbjct: 197 R----------------WMPPE-SIFYNRYTTESDVWAYGVV---LWEIFSYGMQPYYGM 236
Query: 638 -RQIVLSDLKQKGELP-PSWVAKFSEQESLLRRLMSPSPSDRPSATEL 683
+ V+ ++ L P E +L+R S PSDRPS +
Sbjct: 237 AHEEVIYYVRDGNVLSCPDNCP--LELYNLMRLCWSKLPSDRPSFASI 282
>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Colony-Stimulating Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Colony-Stimulating
Factor-1 Receptor (CSF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CSF-1R,
also called c-Fms, is a member of the Platelet Derived
Growth Factor Receptor (PDGFR) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
CSF-1R to its ligand, CSF-1, leads to receptor
dimerization, trans phosphorylation and activation, and
intracellular signaling. CSF-1R signaling is critical in
the regulation of macrophages and osteoclasts. It leads
to increases in gene transcription and protein
translation, and induces cytoskeletal remodeling. CSF-1R
signaling leads to a variety of cellular responses
including survival, proliferation, and differentiation
of target cells. It plays an important role in innate
immunity, tissue development and function, and the
pathogenesis of some diseases including atherosclerosis
and cancer. CSF-1R signaling is also implicated in
mammary gland development during pregnancy and
lactation. Aberrant CSF-1/CSF-1R expression correlates
with tumor cell invasiveness, poor clinical prognosis,
and bone metastasis in breast cancer. Although the
structure of the human CSF-1R catalytic domain is known,
it is excluded from this specific alignment model
because it contains a deletion in its sequence.
Length = 374
Score = 42.1 bits (99), Expect = 0.001
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 496 YIQMEYCPRTLRQVFESYDHFDKELAW--------HLFRQIVEGLAHIHGQGIIHRDLTP 547
Y++M + Q +S D D E +W Q+ +G+ + + IHRD+
Sbjct: 181 YVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAA 240
Query: 548 NNIFFDARNDIKIGDFGLAK 567
N+ KI DFGLA+
Sbjct: 241 RNVLLTDGRVAKICDFGLAR 260
>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine
Kinase, Apoptosis-associated tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Aatyk2 is
a member of the Aatyk subfamily of proteins, which are
receptor kinases containing a transmembrane segment and
a long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk2 is also called lemur tyrosine kinase 2
(Lmtk2) or brain-enriched kinase (Brek). It is expressed
at high levels in early postnatal brain, and has been
shown to play a role in nerve growth factor (NGF)
signaling. Studies with knockout mice reveal that Aatyk2
is essential for late stage spermatogenesis. Although it
is classified as a tyr kinase based on sequence
similarity and the phylogenetic tree, Aatyk2 has been
characterized as a serine/threonine kinase.
Length = 268
Score = 41.4 bits (97), Expect = 0.002
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 41/177 (23%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLE---QLDQDAAFPTD 583
+I G+ H+H +H DL N F + +K+GD+G+ E + + D P
Sbjct: 107 EIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLR 166
Query: 584 TGGVSVDGTGQVGTYFYTAPEI-----------EQGWPKIDEKADMYSLGIVFFELW--- 629
+ APE+ EQ P +++++LG+ +EL+
Sbjct: 167 ----------------WLAPELVGEFHGGLITAEQTKP-----SNVWALGVTLWELFENA 205
Query: 630 -HPFSTAMERQIVLSDLK-QKGELP-PSWVAKFSEQESLLRRLMSPSPSDRPSATEL 683
P+S +R+++ +K Q+ +L P +SE+ + + SP R +A E+
Sbjct: 206 AQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFCWLSPEKRATAEEV 262
>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 1. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 1 (FGFR1); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR1 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Alternative splicing of
FGFR1 transcripts produces a variety of isoforms, which
are differentially expressed in cells. FGFR1 binds the
ligands, FGF1 and FGF2, with high affinity and has also
been reported to bind FGF4, FGF6, and FGF9. FGFR1
signaling is critical in the control of cell migration
during embryo development. It promotes cell
proliferation in fibroblasts. Nuclear FGFR1 plays a role
in the regulation of transcription. Mutations,
insertions or deletions of FGFR1 have been identified in
patients with Kallman's syndrome (KS), an inherited
disorder characterized by hypogonadotropic hypogonadism
and loss of olfaction. Aberrant FGFR1 expression has
been found in some human cancers including 8P11
myeloproliferative syndrome (EMS), breast cancer, and
pancreatic adenocarcinoma.
Length = 307
Score = 41.5 bits (97), Expect = 0.002
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 34/188 (18%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
Q+ G+ ++ + IHRDL N+ N +KI DFGLA+ + +D T G
Sbjct: 148 QVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLAR--DIHHIDYYKK--TTNGR 203
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKI-DEKADMYSLGIVFFELW----HPF-STAMERQI 640
+ V + APE + +I ++D++S G++ +E++ P+ +E
Sbjct: 204 LPVK---------WMAPEAL--FDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF 252
Query: 641 VLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQDALPPQMEYELLDNI 700
L + + P + +E ++R PS RP+ +L++D LD I
Sbjct: 253 KLLKEGHRMDKPSNCT---NELYMMMRDCWHAVPSQRPTFKQLVED----------LDRI 299
Query: 701 LRMMHSSE 708
L + + E
Sbjct: 300 LALTSNQE 307
>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR) subfamily; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). The InsR subfamily
is composed of InsR, Insulin-like Growth Factor-1
Receptor (IGF-1R), and similar proteins. PTKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR and
IGF-1R are receptor tyr kinases (RTKs) composed of two
alphabeta heterodimers. Binding of the ligand (insulin,
IGF-1, or IGF-2) to the extracellular alpha subunit
activates the intracellular tyr kinase domain of the
transmembrane beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR and IGF-1R, which share 84%
sequence identity in their kinase domains, display
physiologically distinct yet overlapping functions in
cell growth, differentiation, and metabolism. InsR
activation leads primarily to metabolic effects while
IGF-1R activation stimulates mitogenic pathways. In
cells expressing both receptors, InsR/IGF-1R hybrids are
found together with classical receptors. Both receptors
can interact with common adaptor molecules such as IRS-1
and IRS-2.
Length = 277
Score = 41.2 bits (97), Expect = 0.002
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
+I +G+A++ + +HRDL N +KIGDFG+ + + + D G
Sbjct: 127 EIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDI----YETDYYRKGGKGL 182
Query: 587 VSVDGTGQVGTYFYTAPE-IEQGWPKIDEKADMYSLGIVFFEL 628
+ V + APE ++ G K+D++S G+V +E+
Sbjct: 183 LPVR---------WMAPESLKDG--VFTTKSDVWSFGVVLWEM 214
>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein
Tyrosine Kinases, Apoptosis-associated tyrosine kinases
1 and 3. Protein Tyrosine Kinase (PTK) family;
Apoptosis-associated tyrosine kinase 1 (Aatyk1) and
Aatyk3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Aatyk1 and Aatyk3 are
members of the Aatyk subfamily of proteins. Aatyk3 is a
receptor kinase containing a transmembrane segment and a
long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk1 has a similar domain arrangement but
without the transmembrane segment and is thus, a
cytoplasmic (or nonreceptor) kinase. The expression of
Aatyk1 (also referred simply as Aatyk) is upregulated
during growth arrest and apoptosis in myeloid cells.
Aatyk1 has been implicated in neural differentiation,
and is a regulator of the Na-K-2Cl cotransporter, a
membrane protein involved in cell proliferation and
survival, epithelial transport, and blood pressure
control. The function of Aatyk3 is still unknown.
Length = 269
Score = 40.7 bits (95), Expect = 0.003
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 37/175 (21%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
+I GL H+H IH DL N A +KIGD+GL+ + +D D
Sbjct: 108 EIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHN----KYKEDYYVTPDQLW 163
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDE------------KADMYSLGIVFFELW----H 630
V + + APE+ +DE +++++SLG+ +EL+
Sbjct: 164 VPLR---------WIAPEL------VDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQ 208
Query: 631 PFSTAMERQIVLSDLK-QKGELP-PSWVAKFSEQESLLRRLMSPSPSDRPSATEL 683
P+ + Q++ ++ Q+ +LP P S++ + + P RPSA E+
Sbjct: 209 PYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCWLQPEQRPSAEEV 263
>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 4. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 4 (FGFR4); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR4 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Unlike other FGFRs,
there is only one splice form of FGFR4. It binds FGF1,
FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective
ligand for FGFR4. Although disruption of FGFR4 in mice
causes no obvious phenotype, in vivo inhibition of FGFR4
in cultured skeletal muscle cells resulted in an arrest
of muscle progenitor differentiation. FGF6 and FGFR4 are
uniquely expressed in myofibers and satellite cells.
FGF6/FGFR4 signaling appears to play a key role in the
regulation of muscle regeneration. A polymorphism in
FGFR4 is found in head and neck squamous cell carcinoma.
Length = 314
Score = 40.7 bits (95), Expect = 0.003
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 26/180 (14%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
Q+ G+ ++ + IHRDL N+ N +KI DFGLA+ + D D T G
Sbjct: 142 QVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVH----DIDYYKKTSNGR 197
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKI-DEKADMYSLGIVFFELW----HPF-STAMERQI 640
+ V + APE + ++ ++D++S GI+ +E++ P+ +E
Sbjct: 198 LPVK---------WMAPEAL--FDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELF 246
Query: 641 VLSDLKQKGELPPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQ--DALPPQMEYELLD 698
L + + P + E L+R P+ RP+ +L++ D + + E LD
Sbjct: 247 KLLREGHRMDKPSNCT---HELYMLMRECWHAVPTQRPTFKQLVEALDKVLAAVSEEYLD 303
>gnl|CDD|226699 COG4248, COG4248, Uncharacterized protein with protein kinase and
helix-hairpin-helix DNA-binding domains [General
function prediction only].
Length = 637
Score = 41.1 bits (96), Expect = 0.003
Identities = 34/146 (23%), Positives = 50/146 (34%), Gaps = 29/146 (19%)
Query: 497 IQMEYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARN 556
I M Y P T RQ SY H + + R + A +H G + D+ N+
Sbjct: 98 IHMIYSPATRRQ---SYPHCAWDFLLRVARNLASAFATLHEHGHVVGDVNQNSFL----- 149
Query: 557 DIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKI---- 612
+ D +D D+ G VG +T PE+ Q P
Sbjct: 150 ---VSDDSKVVL-----VDSDSFQINANG---TLHLCPVGVSEFTPPEL-QTLPSFVGFE 197
Query: 613 -DEKADMYSLGIVFFELW----HPFS 633
D + L ++ F L HP+S
Sbjct: 198 RTANHDNFGLAVLIFHLLFGGRHPYS 223
>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine
Kinase, HER3. Protein Tyrosine Kinase (PTK) family;
HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER3 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER3 binds the neuregulin ligands, NRG1 and
NRG2. HER3 contains an impaired tyr kinase domain and
relies on its heterodimerization partners for activity
following ligand binding. The HER2-HER3 heterodimer
constitutes a high affinity co-receptor capable of
potent mitogenic signaling. HER3 participates in a
signaling pathway involved in the proliferation,
survival, adhesion, and motility of tumor cells.
Length = 279
Score = 39.9 bits (93), Expect = 0.005
Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 36/157 (22%)
Query: 506 LRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGL 565
L V + D D + + QI +G+ ++ ++HR+L NI + + ++I DFG+
Sbjct: 96 LDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGV 155
Query: 566 AKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKID--------EKAD 617
A L +P D YFY+ + W ++ ++D
Sbjct: 156 ADLL----------YPDDK------------KYFYSEHKTPIKWMALESILFGRYTHQSD 193
Query: 618 MYSLGIVFFELW----HPFSTAMERQIVLSDLKQKGE 650
++S G+ +E+ P++ M V DL +KGE
Sbjct: 194 VWSYGVTVWEMMSYGAEPYA-GMRPHEV-PDLLEKGE 228
>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 2.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR2 (or Flk1) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of VEGFRs to their ligands, the VEGFs, leads to
receptor dimerization, activation, and intracellular
signaling. The carboxyl terminus of VEGFR2 plays an
important role in its autophosphorylation and
activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD
and VEGFE. VEGFR2 signaling is implicated in all aspects
of normal and pathological vascular endothelial cell
biology. It induces a variety of cellular effects
including migration, survival, and proliferation. It is
critical in regulating embryonic vascular development
and angiogenesis. VEGFR2 is the major signal transducer
in pathological angiogenesis including cancer and
diabetic retinopathy, and is a target for inhibition in
cancer therapy.
Length = 343
Score = 40.0 bits (93), Expect = 0.006
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
Q+ +G+ + + IHRDL NI N +KI DFGLA+
Sbjct: 187 QVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLAR 227
>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 2.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 2 (Ror2); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror2 plays important roles in skeletal
and heart formation. Ror2-deficient mice show widespread
bone abnormalities, ventricular defects in the heart,
and respiratory dysfunction. Mutations in human Ror2
result in two different bone development genetic
disorders, recessive Robinow syndrome and brachydactyly
type B. Ror2 is also implicated in neural development.
Length = 283
Score = 39.6 bits (92), Expect = 0.006
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 40/186 (21%)
Query: 504 RTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDF 563
+T++ E D H+ QI G+ + ++H+DL N+ + ++KI D
Sbjct: 115 KTVKSTLEPADFV------HIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDL 168
Query: 564 GLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGI 623
GL F ++ D + G + + + I G ID +D++S G+
Sbjct: 169 GL--FREVYAADY----------YKLMGNSLLPIRWMSPEAIMYGKFSID--SDIWSYGV 214
Query: 624 VFFELWHPFSTAME------RQIVLSDLKQKGELP-----PSWVAKFSEQESLLRRLMSP 672
V LW FS ++ Q V+ ++ + LP P+WV +L+ +
Sbjct: 215 V---LWEVFSYGLQPYCGYSNQDVIEMIRNRQVLPCPDDCPAWVY------TLMLECWNE 265
Query: 673 SPSDRP 678
PS RP
Sbjct: 266 FPSRRP 271
>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine
Kinases, Fibroblast Growth Factor Receptors. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor (FGFR) subfamily; catalytic (c) domain. The
FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K).PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with three
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
FGFRs to their ligands, the FGFs, and to heparin/heparan
sulfate (HS) results in the formation of a ternary
complex, which leads to receptor dimerization and
activation, and intracellular signaling. There are at
least 23 FGFs and four types of FGFRs. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. FGF/FGFR signaling is
important in the regulation of embryonic development,
homeostasis, and regenerative processes. Depending on
the cell type and stage, FGFR signaling produces diverse
cellular responses including proliferation, growth
arrest, differentiation, and apoptosis. Aberrant
signaling leads to many human diseases such as skeletal,
olfactory, and metabolic disorders, as well as cancer.
Length = 293
Score = 39.7 bits (93), Expect = 0.006
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
Q+ G+ + + IHRDL N+ + +KI DFGLA+
Sbjct: 140 QVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLAR 180
>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine
Kinases, Vascular Endothelial Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor (VEGFR) subfamily;
catalytic (c) domain. The VEGFR subfamily consists of
VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. There are five
VEGF ligands in mammals, which bind, in an overlapping
pattern to the three VEGFRs, which can form homo or
heterodimers. VEGFRs regulate the cardiovascular system.
They are critical for vascular development during
embryogenesis and blood vessel formation in adults. They
induce cellular functions common to other growth factor
receptors such as cell migration, survival, and
proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta
growth factor (PLGF). It regulates monocyte and
macrophage migration, vascular permeability,
haematopoiesis, and the recruitment of haematopietic
progenitor cells from the bone marrow.
Length = 337
Score = 39.4 bits (92), Expect = 0.009
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
Q+ G+ + + IHRDL NI N +KI DFGLA+
Sbjct: 181 QVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLAR 221
>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to
tyrosine kinase). Protein Tyrosine Kinase (PTK) family;
Receptor related to tyrosine kinase (Ryk); pseudokinase
domain. The PTKc (catalytic domain) family to which this
subfamily belongs, is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ryk is a
receptor tyr kinase (RTK) containing an extracellular
region with two leucine-rich motifs, a transmembrane
segment, and an intracellular inactive pseudokinase
domain. The extracellular region of Ryk shows homology
to the N-terminal domain of Wnt inhibitory factor-1
(WIF) and serves as the ligand (Wnt) binding domain of
Ryk. Ryk is expressed in many different tissues both
during development and in adults, suggesting a
widespread function. It acts as a chemorepulsive axon
guidance receptor of Wnt glycoproteins and is
responsible for the establishment of axon tracts during
the development of the central nervous system. In
addition, studies in mice reveal that Ryk is essential
in skeletal, craniofacial, and cardiac development.
Thus, it appears Ryk is involved in signal transduction
despite its lack of kinase activity. Ryk may function as
an accessory protein that modulates the signals coming
from catalytically active partner RTKs such as the Eph
receptors.
Length = 280
Score = 38.9 bits (91), Expect = 0.010
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 523 HLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPT 582
H+ QI G++++H +G+IH+D+ N D +KI D L++ L FP
Sbjct: 121 HMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDL----------FPM 170
Query: 583 D 583
D
Sbjct: 171 D 171
>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 3.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR3 (or Flt4) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. VEGFR3
preferentially binds the ligands VEGFC and VEGFD. VEGFR3
is essential for lymphatic endothelial cell (EC)
development and function. It has been shown to regulate
adaptive immunity during corneal transplantation. VEGFR3
is upregulated on blood vascular ECs in pathological
conditions such as vascular tumors and the periphery of
solid tumors. It plays a role in cancer progression and
lymph node metastasis. Missense mutations in the VEGFR3
gene are associated with primary human lymphedema.
Length = 338
Score = 39.2 bits (91), Expect = 0.011
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
Q+ G+ + + IHRDL NI N +KI DFGLA+
Sbjct: 182 QVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLAR 222
>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine
Kinase, C-ros. Protein Tyrosine Kinases (PTK) family;
C-ros and Drosophila Sevenless proteins; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The
proto-oncogene c-ros encodes an orphan receptor tyr
kinase (RTK) with an unknown ligand. RTKs contain an
extracellular ligand-binding domain, a transmembrane
region, and an intracellular tyr kinase domain. RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. C-ros is
expressed in embryonic cells of the kidney, intestine
and lung, but disappears soon after birth. It persists
only in the adult epididymis. Male mice bearing inactive
mutations of c-ros lack the initial segment of the
epididymis and are infertile. The Drosophila protein,
Sevenless, is required for the specification of the R7
photoreceptor cell during eye development.
Length = 269
Score = 38.7 bits (90), Expect = 0.013
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 29/163 (17%)
Query: 528 IVEGLAHIHGQGIIHRDLTPNNIF-----FDARNDIKIGDFGLAKFLKLEQLDQDAAFPT 582
+ +G ++ IHRDL N +DA +KIGDFGLA+ + + +
Sbjct: 115 VAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDI----------YKS 164
Query: 583 DTGGVSVDGTGQVGTYFYTAPE-IEQGWPKIDEKADMYSLGIVFFE---LWHPFSTAMER 638
D +G G + + APE + G K ++D++S G++ +E L A+
Sbjct: 165 DY--YRKEGEGLLPVR-WMAPESLLDG--KFTTQSDVWSFGVLMWEILTLGQQPYPALNN 219
Query: 639 QIVLSDLKQKGEL--PPSWVAKFSEQESLLRRLMSPSPSDRPS 679
Q VL + G L P + K L+ + PS+RP+
Sbjct: 220 QEVLQHVTAGGRLQKPENCPDKI---YQLMTNCWAQDPSERPT 259
>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine
Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR is a
receptor tyr kinase (RTK) that is composed of two
alphabeta heterodimers. Binding of the insulin ligand to
the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR signaling plays an important
role in many cellular processes including glucose
homeostasis, glycogen synthesis, lipid and protein
metabolism, ion and amino acid transport, cell cycle and
proliferation, cell differentiation, gene transcription,
and nitric oxide synthesis. Insulin resistance, caused
by abnormalities in InsR signaling, has been described
in diabetes, hypertension, cardiovascular disease,
metabolic syndrome, heart failure, and female
infertility.
Length = 288
Score = 38.4 bits (89), Expect = 0.016
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
+I +G+A+++ + +HRDL N +KIGDFG+ +
Sbjct: 127 EIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTR 167
>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase,
Axl. Protein Tyrosine Kinase (PTK) family; Axl;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl is a member of the
Axl subfamily, which is composed of receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with two immunoglobulin-like domains followed by two
fibronectin type III repeats, a transmembrane segment,
and an intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl is widely expressed in a
variety of organs and cells including epithelial,
mesenchymal, hematopoietic, as well as non-transformed
cells. Axl signaling is important in many cellular
functions such as survival, anti-apoptosis,
proliferation, migration, and adhesion. Axl was
originally isolated from patients with chronic
myelogenous leukemia and a chronic myeloproliferative
disorder. Axl is overexpressed in many human cancers
including colon, squamous cell, thyroid, breast, and
lung carcinomas.
Length = 272
Score = 37.7 bits (87), Expect = 0.024
Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 22/164 (13%)
Query: 528 IVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGV 587
I G+ ++ + IHRDL N + ++ + DFGL+K K+ D V
Sbjct: 121 IASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSK--KIYNGDYYRQGRIAKMPV 178
Query: 588 SVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWHPFST---AMERQIVLSD 644
+ YT K+D++S G+ +E+ T +E +
Sbjct: 179 KWIAIESLADRVYTT------------KSDVWSFGVTMWEIATRGQTPYPGVENSEIYDY 226
Query: 645 LKQKGEL--PPSWVAKFSEQESLLRRLMSPSPSDRPSATELLQD 686
L+Q L PP + L+ +P DRPS L +
Sbjct: 227 LRQGNRLKQPPDCLDGLYS---LMSSCWLLNPKDRPSFETLRCE 267
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 37.4 bits (87), Expect = 0.036
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 523 HLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
H+ QI G+ ++ +HRDL N +KI DFGL++
Sbjct: 128 HIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSR 172
Score = 30.5 bits (69), Expect = 4.5
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 380 LNDFEELQPLGHGGFG-----HVVLCKNKLDGRHYAVKKIRLKDKSLP-VNDRILREVAT 433
L+ L+ LG G FG + +L A+K LK+ + P V +E
Sbjct: 4 LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKT--LKENAEPKVQQEFRQEAEL 61
Query: 434 LSRLQHQHVV 443
+S LQH ++V
Sbjct: 62 MSDLQHPNIV 71
>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 2. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
2 (DDR2) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR2 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR2 binds mostly to fibrillar collagens. More recently,
it has been reported to also bind collagen X. DDR2 is
widely expressed in many tissues with the highest levels
found in skeletal muscle, skin, kidney and lung. It is
important in cell proliferation and development. Mice,
with a deletion of DDR2, suffer from dwarfism and
delayed healing of epidermal wounds. DDR2 also
contributes to collagen (type I) regulation by
inhibiting fibrillogenesis and altering the morphology
of collagen fibers. It is also expressed in immature
dendritic cells (DCs), where it plays a role in DC
activation and function.
Length = 296
Score = 37.2 bits (86), Expect = 0.038
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFL 569
QI G+ ++ +HRDL N IKI DFG+++ L
Sbjct: 138 QIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNL 180
>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine
Kinases, Met and Ron. Protein Tyrosine Kinase (PTK)
family; Met and Ron; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Met and
Ron are receptor tyr kinases (RTKs) composed of an
alpha-beta heterodimer. The extracellular alpha chain is
disulfide linked to the beta chain, which contains an
extracellular ligand-binding region with a sema domain,
a PSI domain and four IPT repeats, a transmembrane
segment, and an intracellular catalytic domain. Binding
to their ligands leads to receptor dimerization,
autophosphorylation, activation, and intracellular
signaling. Met binds to the ligand, hepatocyte growth
factor/scatter factor (HGF/SF), and is also called the
HGF receptor. HGF/Met signaling plays a role in growth,
transformation, cell motility, invasion, metastasis,
angiogenesis, wound healing, and tissue regeneration.
Aberrant expression of Met through mutations or gene
amplification is associated with many human cancers
including hereditary papillary renal and gastric
carcinomas. The ligand for Ron is macrophage stimulating
protein (MSP). Ron signaling is important in regulating
cell motility, adhesion, proliferation, and apoptosis.
Aberrant Ron expression is implicated in tumorigenesis
and metastasis.
Length = 262
Score = 37.1 bits (86), Expect = 0.044
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
Q+ +G+ ++ + +HRDL N D +K+ DFGLA+
Sbjct: 106 QVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLAR 146
>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Insulin-like Growth Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Insulin-like Growth
Factor-1 Receptor (IGF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. IGF-1R is
a receptor tyr kinases (RTK) that is composed of two
alphabeta heterodimers. Binding of the ligand (IGF-1 or
IGF-2) to the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, which stimulates downstream kinase
activities and biological function. IGF-1R signaling is
important in the differentiation, growth, and survival
of normal cells. In cancer cells, where it is frequently
overexpressed, IGF-1R is implicated in proliferation,
the suppression of apoptosis, invasion, and metastasis.
IGF-1R is being developed as a therapeutic target in
cancer treatment.
Length = 277
Score = 36.9 bits (85), Expect = 0.044
Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGG 586
+I +G+A+++ +HRDL N +KIGDFG+ + + +T
Sbjct: 127 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDI------------YETDY 174
Query: 587 VSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELW----HPFSTAMERQIVL 642
G G + + + ++ G +D++S G+V +E+ P+ M + VL
Sbjct: 175 YRKGGKGLLPVRWMSPESLKDG--VFTTYSDVWSFGVVLWEIATLAEQPYQ-GMSNEQVL 231
Query: 643 SDLKQKGEL--PPSWVAKFSEQESLLRRLMSPSPSDRPSATELL 684
+ + G L P + E L+R +P RPS E++
Sbjct: 232 RFVMEGGLLDKPDNCPDMLFE---LMRMCWQYNPKMRPSFLEII 272
>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain
Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Discoidin Domain Receptor
(DDR)-like proteins; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR-like
proteins are members of the DDR subfamily, which are
receptor tyr kinases (RTKs) containing an extracellular
discoidin homology domain, a transmembrane segment, an
extended juxtamembrane region, and an intracellular
catalytic domain. The binding of the ligand, collagen,
to DDRs results in a slow but sustained receptor
activation. DDRs regulate cell adhesion, proliferation,
and extracellular matrix remodeling. They have been
linked to a variety of human cancers including breast,
colon, ovarian, brain, and lung. There is no evidence
showing that DDRs act as transforming oncogenes. They
are more likely to play a role in the regulation of
tumor growth and metastasis.
Length = 295
Score = 36.9 bits (85), Expect = 0.053
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 523 HLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFL 569
++ QI G+ ++ +HRDL N IKI DFG+++ L
Sbjct: 133 YMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNL 179
Score = 33.0 bits (75), Expect = 0.81
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 15/72 (20%)
Query: 387 QPLGHGGFGHVVLCK------------NKLDGRH--YAVKKIRLKDKSLPVNDRILREVA 432
+ LG G FG V LC+ + DG+ AVK +R ND L+E+
Sbjct: 11 EKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARND-FLKEIK 69
Query: 433 TLSRLQHQHVVR 444
+SRL++ +++R
Sbjct: 70 IMSRLKNPNIIR 81
>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase,
Kit. Protein Tyrosine Kinase (PTK) family; Kit (or
c-Kit); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Kit is a member of the
Platelet Derived Growth Factor Receptor (PDGFR)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of Kit to its ligand, the stem-cell factor
(SCF), leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. Kit is important in the development of
melanocytes, germ cells, mast cells, hematopoietic stem
cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. Kit signaling is
involved in major cellular functions including cell
survival, proliferation, differentiation, adhesion, and
chemotaxis. Mutations in Kit, which result in
constitutive ligand-independent activation, are found in
human cancers such as gastrointestinal stromal tumor
(GIST) and testicular germ cell tumor (TGCT). The
aberrant expression of Kit and/or SCF is associated with
other tumor types such as systemic mastocytosis and
cancers of the breast, neurons, lung, prostate, colon,
and rectum. Although the structure of the human Kit
catalytic domain is known, it is excluded from this
specific alignment model because it contains a deletion
in its sequence.
Length = 375
Score = 36.4 bits (84), Expect = 0.088
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLK 570
Q+ +G++ + + IHRDL NI KI DFGLA+ ++
Sbjct: 222 QVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIR 265
>gnl|CDD|221750 pfam12745, HGTP_anticodon2, Anticodon binding domain of tRNAs. This
is an HGTP_anticodon binding domain, found largely on
Gcn2 proteins which bind tRNA to down regulate
translation in certain stress situations.
Length = 260
Score = 36.1 bits (84), Expect = 0.089
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 1082 FKPVRNEAGTSVLVCSRGGGGLLVERMELVAELWEENIKAQFVPVPDPSLTEQYEYASEH 1141
+KP R + VLV S L +EL+ ELW I A SL E A +
Sbjct: 1 WKPRRCD----VLVASFDPSILRTVGVELLQELWAHGISADLA-DACSSLEELLSRARDD 55
Query: 1142 DIKCLVIL----TDTGAQKGLVKVRHLDVKKEKEVQRESLVRFLLDAI 1185
+VI+ + +K L KV++L K++ ++ + LV +L I
Sbjct: 56 GHNWIVIIKQQNSHDSKEKPL-KVKNLGRKEDTDIDYDELVPWLRSEI 102
>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 1.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 1 (Ror1); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror kinases are expressed in many
tissues during development. Avian Ror1 was found to be
involved in late limb development. Studies in mice
reveal that Ror1 is important in the regulation of
neurite growth in central neurons, as well as in
respiratory development. Loss of Ror1 also enhances the
heart and skeletal abnormalities found in Ror2-deficient
mice.
Length = 283
Score = 35.8 bits (82), Expect = 0.10
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 509 VFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
V S DH D H+ QI G+ ++ +H+DL NI + +KI D GL++
Sbjct: 117 VKSSLDHGD---FLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSR 172
>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase
adapter protein beta. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) beta
subfamily, pseudokinase domain. The STRAD-beta subfamily
is part of a larger superfamily that includes the
catalytic domains of serine/threonine kinases (STKs),
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The pseudokinase domain shows similarity to
protein kinases but lacks crucial residues for catalytic
activity. STRAD forms a complex with the scaffolding
protein MO25, and the STK, LKB1, resulting in the
activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. STRAD-beta is also referred to as ALS2CR2
(Amyotrophic lateral sclerosis 2 chromosomal region
candidate gene 2 protein), since the human gene encoding
it is located within the juvenile ALS2 critical region
on chromosome 2q33-q34. It is not linked to the
development of ALS2.
Length = 328
Score = 36.1 bits (83), Expect = 0.11
Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 62/227 (27%)
Query: 529 VEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVS 588
+ GL ++H G IHR++ ++I + + GL+ L + Q A D S
Sbjct: 111 LRGLNYLHQNGYIHRNIKASHILISGDGLVSLS--GLSHLYSLVRNGQKAKVVYDFPQFS 168
Query: 589 VDGTGQVGTYFYTAPE-IEQGWPKIDEKADMYSLGIVFFELWH---PFSTAMERQIVLSD 644
V + +PE + Q + K+D+YS+GI EL PF + Q++L
Sbjct: 169 T----SVLPWL--SPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQK 222
Query: 645 LKQKGELP--PSWVAKFSEQESLLR--------------------------RLMSPS--- 673
LK P P + F +ES ++ RL +PS
Sbjct: 223 LKG---PPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKT 279
Query: 674 ----------------PSDRPSATELLQDALPPQMEYELLDNILRMM 704
P RPSA+ LL A Q++ + +IL ++
Sbjct: 280 FSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQVKEQTQGSILSLL 326
>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine
Kinase, Tie1. Protein Tyrosine Kinase (PTK) family;
Tie1; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie1 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. No specific ligand has been
identified for Tie1, although the angiopoietin, Ang-1,
binds to Tie1 through integrins at high concentrations.
In vivo studies of Tie1 show that it is critical in
vascular development.
Length = 297
Score = 35.8 bits (82), Expect = 0.11
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 17/91 (18%)
Query: 494 YLYIQMEYCPRT-----LRQ--VFESYDHFDKE-------LAWHLFR---QIVEGLAHIH 536
YLYI +EY P LR+ V E+ F KE + L + + G+ ++
Sbjct: 77 YLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS 136
Query: 537 GQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
+ IHRDL N+ KI DFGL++
Sbjct: 137 EKQFIHRDLAARNVLVGENLASKIADFGLSR 167
>gnl|CDD|214801 smart00750, KIND, kinase non-catalytic C-lobe domain. It is an
interaction domain identified as being similar to the
C-terminal protein kinase catalytic fold (C lobe). Its
presence at the N terminus of signalling proteins and
the absence of the active-site residues in the catalytic
and activation loops suggest that it folds independently
and is likely to be non-catalytic. The occurrence of
KIND only in metazoa implies that it has evolved from
the catalytic protein kinase domain into an interaction
domain possibly by keeping the substrate-binding
features.
Length = 176
Score = 35.1 bits (81), Expect = 0.11
Identities = 30/124 (24%), Positives = 41/124 (33%), Gaps = 30/124 (24%)
Query: 505 TLRQVFESYDH-FDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDF 563
+L + E ++E W + Q + L +H Q L +
Sbjct: 2 SLADILEVRGRPLNEEEIWAVCLQCLGALRELHRQAKSGNILLTWDGLLKL--------D 53
Query: 564 GLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGI 623
G F EQ D F APE+ QG EKAD+YSLGI
Sbjct: 54 GSVAFKTPEQSRPDPYF--------------------MAPEVIQGQSY-TEKADIYSLGI 92
Query: 624 VFFE 627
+E
Sbjct: 93 TLYE 96
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G,
H, P, S and T). Other tRNA synthetase sub-families are
too dissimilar to be included. This domain is the core
catalytic domain of tRNA synthetases and includes
glycyl, histidyl, prolyl, seryl and threonyl tRNA
synthetases.
Length = 171
Score = 34.9 bits (81), Expect = 0.13
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 813 FIRWAISNQKSSFKRYEISSVYRRAIGHSPP-NRY---LQGDFDIIG--GASALTEAEVL 866
F +S ++ K Y+I +R R Q D +I G S E+L
Sbjct: 71 FKNEILSYRELPLKLYQIGPCFRYEARPRRGLGRVREFTQVDAEIFGTPEQSEEELEELL 130
Query: 867 KVTMDIVTRF 876
K+ +I+
Sbjct: 131 KLAEEILQDL 140
>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine
Kinases, Anaplastic Lymphoma Kinase and Leukocyte
Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family;
Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine
(tyr) Kinase (LTK); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to tyr
residues in protein substrates. ALK and LTK are orphan
receptor tyr kinases (RTKs) whose ligands are not yet
well-defined. RTKs contain an extracellular
ligand-binding domain, a transmembrane region, and an
intracellular tyr kinase domain. They are usually
activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. ALK appears
to play an important role in mammalian neural
development as well as visceral muscle differentiation
in Drosophila. ALK is aberrantly expressed as fusion
proteins, due to chromosomal translocations, in about
60% of anaplastic large cell lymphomas (ALCLs). ALK
fusion proteins are also found in rare cases of diffuse
large B cell lymphomas (DLBCLs). LTK is mainly expressed
in B lymphocytes and neuronal tissues. It is important
in cell proliferation and survival. Transgenic mice
expressing TLK display retarded growth and high
mortality rate. In addition, a polymorphism in mouse and
human LTK is implicated in the pathogenesis of systemic
lupus erythematosus.
Length = 277
Score = 35.5 bits (82), Expect = 0.14
Identities = 46/191 (24%), Positives = 71/191 (37%), Gaps = 43/191 (22%)
Query: 386 LQPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKSLPVNDR------ILREVATLSRLQH 439
L+ LGHG FG V + GR ++++ K+LP + L E +S+ H
Sbjct: 11 LRALGHGAFGEVY--EGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNH 68
Query: 440 QHVVRYYQAWFETGVADFDGDSMWGSGTLASSTFSNRAASSADVTGQENKLESTYLYIQM 499
Q++VR FE + F + G L S NR + E
Sbjct: 69 QNIVRLIGVSFER-LPRFILLELMAGGDLKSFLRENR-----------PRPER------- 109
Query: 500 EYCPRTLRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARND-- 557
P +L K+L R + +G ++ IHRD+ N +
Sbjct: 110 ---PSSLTM---------KDLL-FCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGR 156
Query: 558 -IKIGDFGLAK 567
KI DFG+A+
Sbjct: 157 VAKIADFGMAR 167
>gnl|CDD|237098 PRK12421, PRK12421, ATP phosphoribosyltransferase regulatory subunit;
Provisional.
Length = 392
Score = 35.3 bits (82), Expect = 0.17
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 16/113 (14%)
Query: 935 RQLLQELNLAEAVVNRLQTVGLRFCGAADQALPRLRGALP-ADKPTRKALDEL-----YL 988
++ Q L + + + R G + AL R L D R+ALDEL +L
Sbjct: 199 AEVCQNLGVGSDLRRMFYALA-RLNGGLE-ALDRALSVLALQDAAIRQALDELKTLAAHL 256
Query: 989 RIWRIEKNIYIDALMPPIESYHRNLFFQVFSVKEKYPATLVEGTLLAVGGRYD 1041
+ E + ID YH L F + L A GGRYD
Sbjct: 257 KNRWPELPVSIDLAELRGYHYHTGLVFAAYI--PGRGQAL------ARGGRYD 301
>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine
Kinase, Tie2. Protein Tyrosine Kinase (PTK) family;
Tie2; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie2 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie2 is expressed
mainly in endothelial cells and hematopoietic stem
cells. It is also found in a subset of tumor-associated
monocytes and eosinophils. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2. The binding of Ang-1
to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. Tie2 signaling plays key regulatory roles in
vascular integrity and quiescence, and in inflammation.
Length = 303
Score = 35.0 bits (80), Expect = 0.20
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 494 YLYIQMEYCPRT-----LRQ--VFESYDHF----------DKELAWHLFRQIVEGLAHIH 536
YLY+ +EY P LR+ V E+ F + H + G+ ++
Sbjct: 82 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS 141
Query: 537 GQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
+ IHRDL NI KI DFGL++
Sbjct: 142 QKQFIHRDLAARNILVGENYVAKIADFGLSR 172
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional.
Length = 540
Score = 35.1 bits (82), Expect = 0.21
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 13/54 (24%)
Query: 678 PSATELL-----QDALPPQMEYELLDNIL-RMMHSSEDTSIYDKVVSSIFDEET 725
PSA EL QD+LPP Y++LD IL R++ E+ S+ ++V++ FD T
Sbjct: 450 PSA-ELRPNQTDQDSLPP---YDVLDAILERLVE--EEQSV-AEIVAAGFDRAT 496
>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine
Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family;
Tyro3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyro3 (or Sky) is a
member of the Axl subfamily, which is composed of
receptor tyr kinases (RTKs) containing an extracellular
ligand-binding region with two immunoglobulin-like
domains followed by two fibronectin type III repeats, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, Gas6 and protein S,
leads to receptor dimerization, autophosphorylation,
activation, and intracellular signaling. Tyro3 is
predominantly expressed in the central nervous system
and the brain, and functions as a neurotrophic factor.
It is also expressed in osteoclasts and has a role in
bone resorption.
Length = 273
Score = 34.5 bits (79), Expect = 0.29
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 528 IVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
I G+ ++ + IHRDL N + + + DFGL+K
Sbjct: 122 IASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSK 161
>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine
Kinases. Protein Tyrosine Kinase (PTK) family; Tie
subfamily; catalytic (c) domain. The Tie subfamily
consists of Tie1 and Tie2. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie proteins are
receptor tyr kinases (RTKs) containing an extracellular
region, a transmembrane segment, and an intracellular
catalytic domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2, while no specific
ligand has been identified for Tie1. The binding of
Ang-1 to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. In vivo studies of Tie1 show that it is
critical in vascular development.
Length = 270
Score = 34.3 bits (78), Expect = 0.32
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 494 YLYIQMEYCPRT-----LRQ--VFESYDHFDKE-------LAWHLFR---QIVEGLAHIH 536
YLY+ +EY P LR+ V E+ F + L + G+ ++
Sbjct: 70 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS 129
Query: 537 GQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
+ IHRDL NI KI DFGL++
Sbjct: 130 QKQFIHRDLAARNILVGENYVAKIADFGLSR 160
>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor alpha.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) alpha; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
alpha is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR alpha forms homodimers or heterodimers
with PDGFR beta, depending on the nature of the PDGF
ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
alpha signaling is important in the formation of lung
alveoli, intestinal villi, mesenchymal dermis, and hair
follicles, as well as in the development of
oligodendrocytes, retinal astrocytes, neural crest
cells, and testicular cells. Aberrant PDGFR alpha
expression is associated with some human cancers.
Mutations in PDGFR alpha have been found within a subset
of gastrointestinal stromal tumors (GISTs). An active
fusion protein FIP1L1-PDGFR alpha, derived from
interstitial deletion, is associated with idiopathic
hypereosinophilic syndrome (HES) and chronic
eosinophilic leukemia (CEL).
Length = 400
Score = 34.2 bits (78), Expect = 0.38
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
Q+ G+ + + +HRDL N+ +KI DFGLA+
Sbjct: 245 QVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLAR 285
>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases. Protein
Tyrosine Kinase (PTK) family; Janus kinase (Jak)
subfamily; pseudokinase domain (repeat1). The Jak
subfamily is composed of Jak1, Jak2, Jak3, TYK2, and
similar proteins. The PTKc (catalytic domain) family to
which this subfamily belongs, is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal catalytic tyr
kinase domain. The pseudokinase domain shows similarity
to tyr kinases but lacks crucial residues for catalytic
activity and ATP binding. It modulates the kinase
activity of the C-terminal catalytic domain. Most Jaks
are expressed in a wide variety of tissues, except for
Jak3, which is expressed only in hematopoietic cells.
Jaks are crucial for cytokine receptor signaling. They
are activated by autophosphorylation upon
cytokine-induced receptor aggregation, and subsequently
trigger downstream signaling events such as the
phosphorylation of signal transducers and activators of
transcription (STATs). Jaks are also involved in
regulating the surface expression of some cytokine
receptors. The Jak-STAT pathway is involved in many
biological processes including hematopoiesis,
immunoregulation, host defense, fertility, lactation,
growth, and embryogenesis.
Length = 259
Score = 32.4 bits (74), Expect = 1.0
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 25/175 (14%)
Query: 520 LAWHLF--RQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQD 577
L W L +Q+ L ++ + ++H ++ NI AR + + G F+KL D
Sbjct: 100 LHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILV-ARYGL---NEGYVPFIKL----SD 151
Query: 578 AAFPTDTGGVSVDGTGQVGTYFYTAPE-IEQGWPKIDEKADMYSLGIVFFELWH----PF 632
P +V + APE I G + AD +S G E+ P
Sbjct: 152 PGIPITVLSREE----RVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPL 207
Query: 633 STAMERQIVLSDLKQKGELP-PSWVAKFSEQESLLRRLMSPSPSDRPSATELLQD 686
ST + + + LP P +E +L+ + + P+ RPS +L+D
Sbjct: 208 ST-LSSSEKERFYQDQHRLPMPDC----AELANLINQCWTYDPTKRPSFRAILRD 257
>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor beta.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) beta; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
beta is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR beta forms homodimers or heterodimers
with PDGFR alpha, depending on the nature of the PDGF
ligand. PDGF-BB and PDGF-DD induce PDGFR beta
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
beta signaling leads to a variety of cellular effects
including the stimulation of cell growth and chemotaxis,
as well as the inhibition of apoptosis and GAP
junctional communication. It is critical in normal
angiogenesis as it is involved in the recruitment of
pericytes and smooth muscle cells essential for vessel
stability. Aberrant PDGFR beta expression is associated
with some human cancers. The continuously-active fusion
proteins of PDGFR beta with COL1A1 and TEL are
associated with dermatofibrosarcoma protuberans (DFSP)
and a subset of chronic myelomonocytic leukemia (CMML),
respectively.
Length = 401
Score = 33.1 bits (75), Expect = 1.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 527 QIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
Q+ G+ + + +HRDL N+ +KI DFGLA+
Sbjct: 247 QVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLAR 287
>gnl|CDD|178538 PLN02952, PLN02952, phosphoinositide phospholipase C.
Length = 599
Score = 33.0 bits (75), Expect = 1.1
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 233 STSPMEEWVE-NGIKGENRDSLLQDHGSNNDGGDTEIDRLESFSFASLGQDQASQDIE-- 289
ST P +E++E +G + + + G N+ E LES F ++ D +
Sbjct: 265 STKPPKEYLESSGPIVIKKKNNVSPSGRNSSEETEEAQTLESMLFEQEADSRSDSDQDDN 324
Query: 290 ----------KDLILVHLLRLACQSTGSLTDALPQIATELYNLGIFSERGRDLASKPSSQ 339
K LI +H A + G+L DA+ ++ L + SE+ + A+ + Q
Sbjct: 325 KSGELQKPAYKRLITIH----AGKPKGTLKDAMKVAVDKVRRLSL-SEQELEKAATTNGQ 379
Query: 340 FNKTFNQ 346
F Q
Sbjct: 380 DVVRFTQ 386
>gnl|CDD|223554 COG0478, COG0478, RIO-like serine/threonine protein kinase fused to
N-terminal HTH domain [Signal transduction mechanisms].
Length = 304
Score = 32.7 bits (75), Expect = 1.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 524 LFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDF 563
+ +I+E + + +GI+H DL+ NI DI + D+
Sbjct: 207 ILDKILEEVRKAYRRGIVHGDLSEFNILVTEDGDIVVIDW 246
>gnl|CDD|240167 cd05144, RIO2_C, RIO kinase family; RIO2, C-terminal catalytic
domain. The RIO kinase catalytic domain family is part
of a larger superfamily, that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase (PI3K). RIO kinases are
atypical protein serine kinases containing a kinase
catalytic signature, but otherwise show very little
sequence similarity to typical PKs. Serine kinases
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine residues in protein substrates. The RIO
catalytic domain is truncated compared to the catalytic
domains of typical PKs, with deletions of the loops
responsible for substrate binding. RIO2 is present in
archaea and eukaryotes. It contains an N-terminal winged
helix (wHTH) domain and a C-terminal RIO kinase
catalytic domain. The wHTH domain is primarily seen in
DNA-binding proteins, although some wHTH domains may be
involved in RNA recognition. RIO2 is essential for
survival and is necessary for rRNA cleavage during 40S
ribosomal subunit maturation. The biological substrates
of RIO2 are still unknown.
Length = 198
Score = 32.1 bits (74), Expect = 1.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 524 LFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDF 563
+ +I+E + + GIIH DL+ NI D I I D+
Sbjct: 130 VLDEILEEIVKAYKHGIIHGDLSEFNILVDDDEKIYIIDW 169
>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related
kinase adapter protein alpha. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) alpha
subfamily, pseudokinase domain. The STRAD alpha
subfamily is part of a larger superfamily that includes
the catalytic domains of serine/threonine kinases
(STKs), protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The pseudokinase domain shows
similarity to protein kinases but lacks crucial residues
for catalytic activity. STRAD forms a complex with the
scaffolding protein MO25, and the STK, LKB1, resulting
in the activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. The structure of STRAD-alpha is available and
shows that this protein binds ATP, has an ordered
activation loop, and adopts a closed conformation
typical of fully active protein kinases. It does not
possess activity due to nonconservative substitutions of
essential catalytic residues. ATP binding enhances the
affinity of STRAD for MO25. The conformation of
STRAD-alpha, stabilized through ATP and MO25, may be
needed to activate LKB1. A mutation which results in a
truncation of a C-terminal part of the human STRAD-alpha
pseudokinase domain and disrupts its association with
LKB1, leads to PMSE (polyhydramnios, megalencephaly,
symptomatic epilepsy) syndrome. Several splice variants
of STRAD-alpha exist which exhibit different effects on
the localization and activation of LKB1.
Length = 327
Score = 32.6 bits (74), Expect = 1.4
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 523 HLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDAAFPT 582
++ + +++ L +IH G +HR + ++I D K+ GL L + Q
Sbjct: 105 YILQGVLKALDYIHHMGYVHRSVKASHILISV--DGKVYLSGLRSNLSMINHGQRLRVVH 162
Query: 583 DTGGVSVDGTGQVGTYFYTAPEI-EQGWPKIDEKADMYSLGIVFFELWH---PFSTAMER 638
D SV + +PE+ +Q D K+D+YS+GI EL + PF
Sbjct: 163 DFPKYSVK------VLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPAT 216
Query: 639 QIVLSDLKQKGELP 652
Q++L L G +P
Sbjct: 217 QMLLEKL--NGTVP 228
>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional.
Length = 283
Score = 32.4 bits (74), Expect = 1.4
Identities = 39/197 (19%), Positives = 73/197 (37%), Gaps = 25/197 (12%)
Query: 494 YLYIQMEYCPRT-LRQVFESYDHFDKELAWHLFRQIVEGLAHIHGQ-GIIHRDLTPNNIF 551
L + +EYC R LR+V + + + +GL +++ +++LT +
Sbjct: 96 RLSLILEYCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFL 155
Query: 552 FDARNDIKIGDFGLAKFLKLEQLDQDAAFPTDTGGVSVDGTGQVGTYFYTAPEIEQG-WP 610
+KI GL K L S V Y + ++ +
Sbjct: 156 VTENYKLKIICHGLEKIL------------------SSPPFKNVNFMVYFSYKMLNDIFS 197
Query: 611 KIDEKADMYSLGIVFFELWH---PFSTAMERQIVLSDLKQKGELPPSWVAKFSEQESLLR 667
+ K D+YSLG+V +E++ PF ++I + + L E + ++
Sbjct: 198 EYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINKNNSLKLPLDCP-LEIKCIVE 256
Query: 668 RLMSPSPSDRPSATELL 684
S RP+ E+L
Sbjct: 257 ACTSHDSIKRPNIKEIL 273
>gnl|CDD|233667 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase. This model
represents the enzyme (UbiB) which catalyzes the first
hydroxylation step in the ubiquinone biosynthetic
pathway in bacteria. It is believed that the reaction is
2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This
model finds hits primarily in the proteobacteria. The
gene is also known as AarF in certain species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 437
Score = 32.3 bits (74), Expect = 1.6
Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 14/103 (13%)
Query: 476 RAASSADVTGQENKLESTYLYIQMEYCPRTLRQVF--------ESYDHFDKELAWHLFRQ 527
R A++A G EN +Y+ Y RT +V D + A +
Sbjct: 202 REAANASELG-ENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKA 260
Query: 528 IVEGLA-----HIHGQGIIHRDLTPNNIFFDARNDIKIGDFGL 565
+ E LA + G H DL P NIF I DFG+
Sbjct: 261 LAENLARSFLNQVLRDGFFHADLHPGNIFVLKDGKIIALDFGI 303
>gnl|CDD|225213 COG2334, COG2334, Putative homoserine kinase type II (protein
kinase fold) [General function prediction only].
Length = 331
Score = 31.9 bits (73), Expect = 1.8
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 537 GQGIIHRDLTPNNIFFDARNDIK-IGDFG 564
G IIH DL P+N+ FD D+ DF
Sbjct: 196 GDQIIHGDLHPDNVLFDDDTDVSGFIDFD 224
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 31.8 bits (72), Expect = 2.2
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 19/128 (14%)
Query: 706 SSEDTSIYDKVVSSIFDEETLDMKHHAGTLRLNRDNTSSIQ--YSDLDTELRDYVVQVTK 763
+ + T+IY + S + L MK +R S I+ + + LR++ +
Sbjct: 241 ADQRTTIYKRDPSKTY---GLKMK-------ASRAFFSEIERRFDAMPFTLRNFEDEKRA 290
Query: 764 EMFRQHCAKHLEIEPMYLLGDCP-----QFKRNTVKLLTHGGDLLELSHELRLPFIRWAI 818
M C KH ++P +L + QFK TV L+ +G + S E + +
Sbjct: 291 RMGLVECVKHELLQPYPVLYEKEGEFVAQFK-FTVLLMPNGPMRI-TSGEFEPDLYKSEM 348
Query: 819 SNQKSSFK 826
Q K
Sbjct: 349 EVQDPEIK 356
>gnl|CDD|187750 cd09233, ACE1-Sec16-like, Ancestral coatomer element 1 (ACE1) of
COPII coat complex assembly protein Sec16. COPII coat
complex plays an important role in vesicular traffic of
newly synthezised proteins from the endoplasmatic
reticulum (ER) to the Golgi apparatus by mediating the
formation of transport vesicles. COPII consists of an
outer coat, made up of the scaffold proteins Sec31 and
Sec13, and the cargo adaptor complex, Sec23 and Sec24,
which are recruited by the small GTPase Sar1. Sec16 is
involved in the early steps of the assembly process.
Sec16 forms elongated heterotetramers with Sec13,
Sec13-(Sec16)2-Sec13. It interacts with Sec13 by
insertion of a single beta-blade to close the
six-bladded beta propeller of Sec13. In the same way
Sec13 interacts with Sec31 and Nup145C, a nuclear pore
protein, all of these contain a structurally related
ancestral coatomer element 1 (ACE1). Sec16 is believed
to be a key component in maintaining the integrity of
the ER exit site.
Length = 314
Score = 31.5 bits (72), Expect = 2.5
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 277 ASLGQDQASQDIEKDLILVHLLRLACQSTGSLTD---ALPQIATELYNL 322
A L +++ D+E L+L LL+L + G L A + NL
Sbjct: 24 AELEENEGYLDLEDKLLLWKLLKLLVRQNGKLVGTDIAEQKALNRFRNL 72
>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family. This family
consists of bacterial antibiotic resistance proteins,
which confer resistance to various aminoglycosides they
include: aminoglycoside 3'-phosphotransferase or
kanamycin kinase / neomycin-kanamycin phosphotransferase
and streptomycin 3''-kinase or streptomycin
3''-phosphotransferase. The aminoglycoside
phosphotransferases inactivate aminoglycoside
antibiotics via phosphorylation. This family also
includes homoserine kinase. This family is related to
fructosamine kinase pfam03881.
Length = 238
Score = 31.0 bits (70), Expect = 2.7
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 507 RQVFESYDHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIG---DF 563
++ + + L L L ++H DL P N+ D ++ DF
Sbjct: 139 AELLDRLAELWERLLAALLA-----LLPALPLVLVHGDLHPGNLLVDP--GGRVTGVIDF 191
Query: 564 GLA 566
A
Sbjct: 192 EDA 194
>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component
[Posttranslational modification, protein turnover,
chaperones].
Length = 158
Score = 30.7 bits (69), Expect = 2.8
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 696 LLDNILRMMHSSEDTSIYDKVVSSIFDEETLDMKHHAGTLRLNRDNTSSIQYSDLDTELR 755
L+ N+L + V SS+ + M+HH +L + ++ + D R
Sbjct: 26 LIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDR 85
Query: 756 DYVVQVTKEMFRQHC--AKHLEIEPMYLLG 783
+ ++V +EM + C A +LEI+P+ LG
Sbjct: 86 FF-MEVDQEMLLEICLAANYLEIKPLLDLG 114
>gnl|CDD|223584 COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme
transport and metabolism].
Length = 269
Score = 30.8 bits (70), Expect = 3.4
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 8/76 (10%)
Query: 496 YIQMEYCPRTLRQVFESYDHFDKEL--AWHLFRQIVEGL------AHIHGQGIIHRDLTP 547
+ + E + HL R+ ++ L H DL P
Sbjct: 103 LPRSGSSFIEPKDYLELLWQQNSRAYRDNHLLRKKLKELRRALEEVPKDDLVPCHNDLNP 162
Query: 548 NNIFFDARNDIKIGDF 563
N+ + + + D+
Sbjct: 163 GNLLLTDKGGLFLIDW 178
>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group contains members identified as related to
zinc-dependent alcohol dehydrogenase and other members
of the MDR family, including threonine dehydrogenase.
The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group includes
various activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
ADH-like proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and generally have 2 tightly bound zinc atoms per
subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 319
Score = 31.1 bits (71), Expect = 3.8
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 941 LNLAEAVVNRLQTVGLRFCGAADQALPRLR 970
+L +AVVN + VG R CG AL LR
Sbjct: 253 FDLTKAVVNEITLVGSR-CGPFAPALRLLR 281
>gnl|CDD|233285 TIGR01134, purF, amidophosphoribosyltransferase. Alternate name:
glutamine phosphoribosylpyrophosphate (PRPP)
amidotransferase [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 442
Score = 30.7 bits (70), Expect = 5.2
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 1107 RMELVAELWEEN-IKAQFV-PVPDPSLTEQYEYASEHDIK 1144
R + +L E+ ++A V PVPD + +A I
Sbjct: 259 RKRMGEKLARESPVEADVVIPVPDSGRSAALGFAQASGIP 298
>gnl|CDD|107197 PHA02515, PHA02515, hypothetical protein; Provisional.
Length = 508
Score = 30.9 bits (69), Expect = 5.3
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 65 DADNLLCLLQDQANSNAREGRVMIFNLVEAAQEFLSEIVPLGQSNESVPGLVTESSSQSF 124
+ADN+ + +QAN NA G N V A + ++ +V ++V G+ + S+ +
Sbjct: 346 NADNINAAVANQANINAVVGNANNINAVAANEGNVNTVVDNLADVQTVAGIAADVSTVAE 405
Query: 125 EGSAVSASKSCSSKVPFVYGFIDL 148
+AV+A + + P V + DL
Sbjct: 406 NEAAVAALGNDLTGQPMVIDYGDL 429
>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Axl subfamily; catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). The Axl subfamily
consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and
similar proteins. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with two
immunoglobulin-like domains followed by two fibronectin
type III repeats, a transmembrane segment, and an
intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl subfamily members are
implicated in a variety of cellular effects including
survival, proliferation, migration, and phagocytosis.
They are also associated with several types of cancer as
well as inflammatory, autoimmune, vascular, and kidney
diseases. Mer is named after its original reported
expression pattern (monocytes, epithelial, and
reproductive tissues). It is required for the ingestion
of apoptotic cells by phagocytes such as macrophages,
retinal pigment epithelial cells, and dendritic cells.
Mer is also important in maintaining immune homeostasis.
Length = 273
Score = 30.2 bits (68), Expect = 6.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 528 IVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAK 567
I G+ ++ + IHRDL N + + DFGL+K
Sbjct: 122 IALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSK 161
>gnl|CDD|240174 cd05153, HomoserineK_II, Homoserine Kinase, type II. Homoserine
kinase is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This subfamily is
composed of unusual homoserine kinases, from a subset of
bacteria, which have a PK fold. These proteins do not
bear any similarity to the GHMP family homoserine
kinases present in most bacteria and eukaryotes.
Homoserine kinase catalyzes the transfer of the
gamma-phosphoryl group from ATP to L-homoserine
producing L-homoserine phosphate, an intermediate in the
production of the amino acids threonine, methionine, and
isoleucine.
Length = 296
Score = 29.9 bits (68), Expect = 8.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 538 QGIIHRDLTPNNIFFD 553
+G+IH DL +N+ FD
Sbjct: 175 RGVIHADLFRDNVLFD 190
>gnl|CDD|224119 COG1198, PriA, Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair].
Length = 730
Score = 30.0 bits (68), Expect = 10.0
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 1129 PSLTEQYEYASEHDIKCLVILTDTGAQKGLVKVRHLDVKKEKEVQRESLVRFLLDAIAS 1187
PSL E Y +E L+ LT+ + L +V +D++KE SL LL+AI
Sbjct: 359 PSL-ESY-ANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRK 415
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.396
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 61,354,922
Number of extensions: 6140987
Number of successful extensions: 5862
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5471
Number of HSP's successfully gapped: 546
Length of query: 1196
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1088
Effective length of database: 6,147,370
Effective search space: 6688338560
Effective search space used: 6688338560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (28.9 bits)