BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000994
(1196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 216 bits (550), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 190/330 (57%), Gaps = 19/330 (5%)
Query: 426 TVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI 485
+VQ P + G L+++QL G+ W+ + +G NGILADEMGLGKT+Q +AF++ L +
Sbjct: 226 SVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ 285
Query: 486 WGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRK---NINPKRLYRRDAG 542
GP ++V P S + W D ++ PDL + Y G + R +R+ NP+ ++
Sbjct: 286 NGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMK 345
Query: 543 FHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTP 602
F++L+T+Y+ ++ D +KWQ+M +DEA +K++ S +++L SF NR+L+TGTP
Sbjct: 346 FNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTP 405
Query: 603 IQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFM 662
+QNN+ EL AL++F+MP F ++ + F E E+ ++ LH ++PF+
Sbjct: 406 LQNNIKELAALVNFLMPGRFTIDQEID--FENQDEEQEEY--------IHDLHRRIQPFI 455
Query: 663 LRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNL 722
LRR+KKDV L +KTE ++ +LS Q +Y+ I K A GH +L
Sbjct: 456 LRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGH------FSL 509
Query: 723 MNIVIQLRKVCNHPELFERNEGSSYLYFGE 752
+NI+ +L+K NHP LF+ E FG+
Sbjct: 510 LNIMNELKKASNHPYLFDNAEERVLQKFGD 539
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 87/125 (69%), Gaps = 1/125 (0%)
Query: 1051 LLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMD 1110
L+ SGK+ LD LL RL+ + HRVL+F+QM +ML+IL DY++ + + RLDG+
Sbjct: 551 LIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQ 610
Query: 1111 RRDMVRDFQH-RSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG 1169
RR + F S+ FVFLLSTRAGGLGINL ADTV+ ++SDWNP DLQAM RAHR+G
Sbjct: 611 RRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIG 670
Query: 1170 QTKDV 1174
Q V
Sbjct: 671 QKNHV 675
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 173 bits (438), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 176/318 (55%), Gaps = 30/318 (9%)
Query: 430 PELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPF 489
P K +L+ YQ+KG W+ + G LAD+MGLGKT+Q +A + A+++N P
Sbjct: 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKENELTPS 89
Query: 490 LVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITS 549
LV+ P SVL NW +E+S+F P L+ + + R + + I++T+
Sbjct: 90 LVICPLSVLKNWEEELSKFAPHLRFAVF--------------HEDRSKIKLEDYDIILTT 135
Query: 550 YQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAE 609
Y +L+ D + + V+W+Y+V+DEAQ IK+ + +K + + R+ LTGTPI+N + +
Sbjct: 136 YAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDD 194
Query: 610 LWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKD 669
LW+++ F+ P L S+ +F F+ I + G + + + L AI+ PF+LRR K D
Sbjct: 195 LWSIMTFLNPGLLGSYSEFKSKFATPI----KKGDNMAKEE---LKAIISPFILRRTKYD 247
Query: 670 --VISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVI 727
+I++L K E V+C L+ Q A Y+A + LF+N K+ +++ ++
Sbjct: 248 KAIINDLPDKIETNVYCNLTPEQAAMYKA-----EVENLFNNIDSVTGIKRKGMILSTLL 302
Query: 728 QLRKVCNHPELFERNEGS 745
+L+++ +HP L + E S
Sbjct: 303 KLKQIVDHPALLKGGEQS 320
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 11/126 (8%)
Query: 1055 SGKL-QTLDILLKRLRAENHRVLLFAQMTKM----LNILEDYMNYR-KYRYLRLDGSSTI 1108
SGK+ +T++I+ + L E ++ +F Q M NI+E +N + Y G +
Sbjct: 324 SGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLY----GELSK 378
Query: 1109 MDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRL 1168
+R D++ FQ+ + +LS +AGG GINLT+A+ VI ++ WNP ++ QA DR +R+
Sbjct: 379 KERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRI 438
Query: 1169 GQTKDV 1174
GQT++V
Sbjct: 439 GQTRNV 444
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
Length = 500
Score = 166 bits (421), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 170/318 (53%), Gaps = 30/318 (9%)
Query: 430 PELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPF 489
P K +L+ YQ+KG W + G LAD+ GLGKT+Q +A + A+++N P
Sbjct: 31 PYNIKANLRPYQIKGFSWXRFXNKLGFGICLADDXGLGKTLQTIAVFSD-AKKENELTPS 89
Query: 490 LVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITS 549
LV+ P SVL NW +E+S+F P L+ + + R + + I++T+
Sbjct: 90 LVICPLSVLKNWEEELSKFAPHLRFAVF--------------HEDRSKIKLEDYDIILTT 135
Query: 550 YQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAE 609
Y +L+ D + + V+W+Y+V+DEAQ IK+ + +K + + R+ LTGTPI+N + +
Sbjct: 136 YAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDD 194
Query: 610 LWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKD 669
LW++ F+ P L S+ +F F+ I+ + L AI+ PF+LRR K D
Sbjct: 195 LWSIXTFLNPGLLGSYSEFKSKFATPIKKG-------DNXAKEELKAIISPFILRRTKYD 247
Query: 670 --VISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVI 727
+I++L K E V+C L+ Q A Y+A + LF+N K+ +++ ++
Sbjct: 248 KAIINDLPDKIETNVYCNLTPEQAAXYKA-----EVENLFNNIDSVTGIKRKGXILSTLL 302
Query: 728 QLRKVCNHPELFERNEGS 745
+L+++ +HP L + E S
Sbjct: 303 KLKQIVDHPALLKGGEQS 320
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 74/126 (58%), Gaps = 11/126 (8%)
Query: 1055 SGK-LQTLDILLKRLRAENHRVLLFAQMTK----MLNILEDYMNYR-KYRYLRLDGSSTI 1108
SGK ++T +I+ + L E ++ +F Q + NI+E +N + Y G +
Sbjct: 324 SGKXIRTXEIIEEAL-DEGDKIAIFTQFVDXGKIIRNIIEKELNTEVPFLY----GELSK 378
Query: 1109 MDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRL 1168
+R D++ FQ+ + +LS +AGG GINLT+A+ VI ++ WNP ++ QA DR +R+
Sbjct: 379 KERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRI 438
Query: 1169 GQTKDV 1174
GQT++V
Sbjct: 439 GQTRNV 444
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 164/334 (49%), Gaps = 24/334 (7%)
Query: 421 MPVTSTVQTPELFKGSLKEYQLKGLQWLVNCY-----EQGLNGILADEMGLGKTIQAMAF 475
+PV V P L K L+ +Q +G+++L +C E I+ADEMGLGKT+Q +
Sbjct: 42 LPVHVVVD-PVLSK-VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITL 99
Query: 476 LAHLAEEKNIWGP----FLVVAPASVLNNWADEISRFCPD-LKTLPYWGGLQERMVLRKN 530
+ L ++ P +VV+P+S++ NW +E+ ++ ++ + GG ++ + K
Sbjct: 100 IWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDE-IDSKL 158
Query: 531 INPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF 590
+N ILI SY+ + + K ++ DE +K+S++ + L S
Sbjct: 159 VNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSM 218
Query: 591 NCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFS----KGIESHA-EHGGT 645
N + R+L++GTPIQN++ E ++L+HF+ + + ++F + F KG ++ A +
Sbjct: 219 NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRA 278
Query: 646 LNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAG 705
E +L L +I+ ++RR + L K E +V C L+ Q+ Y+ +
Sbjct: 279 AGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVE 338
Query: 706 LFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELF 739
K ++ ++ + L+K+CNHP L
Sbjct: 339 SLQTG------KISVSSLSSITSLKKLCNHPALI 366
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Query: 1055 SGKLQTLDILLKRLRAE-NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRD 1113
SGK+ LD +L R + +V+L + T+ L++ E R+Y Y+RLDG+ +I R
Sbjct: 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAK 457
Query: 1114 MVRDFQHRSDI-FVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK 1172
+V F + S F+F+LS++AGG G+NL A+ ++ ++ DWNP D QAM R R GQ K
Sbjct: 458 IVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKK 517
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 11/126 (8%)
Query: 1055 SGKL-QTLDILLKRLRAENHRVLLFAQMTKM----LNILEDYMNYR-KYRYLRLDGSSTI 1108
SGK+ +T++I+ + L E ++ +F Q M NI+E +N + Y G +
Sbjct: 95 SGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLY----GELSK 149
Query: 1109 MDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRL 1168
+R D++ FQ+ + +LS +AGG GINLT+A+ VI ++ WNP ++ QA DR +R+
Sbjct: 150 KERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRI 209
Query: 1169 GQTKDV 1174
GQT++V
Sbjct: 210 GQTRNV 215
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 672 SELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRK 731
S+L K E V+C L+ Q A Y+A + LF+N K+ +++ +++L++
Sbjct: 23 SDLPDKIETNVYCNLTPEQAAMYKA-----EVENLFNNIDSVTGIKRKGMILSTLLKLKQ 77
Query: 732 VCNHPELFERNEGS 745
+ +HP L + E S
Sbjct: 78 IVDHPALLKGGEQS 91
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 33/188 (17%)
Query: 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYW 518
+LADE+GLGKTI+A L H L++ P ++ + W E R
Sbjct: 174 LLADEVGLGKTIEAGXIL-HQQLLSGAAERVLIIVPETLQHQWLVEXLR----------- 221
Query: 519 GGLQERMVLRKNI-NPKRLYRRDAGFHILITSYQLLVADEKYFRRVK----------WQY 567
R LR + + +R + + QL++ + RR K W
Sbjct: 222 -----RFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL 276
Query: 568 MVLDEAQAI---KSSNSIRWKTL--LSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLF 622
+V+DEA + + + S ++ + L+ + LLLT TP Q +A L + P F
Sbjct: 277 LVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGXESHFARLRLLDPNRF 336
Query: 623 DSHEQFNE 630
QF E
Sbjct: 337 HDFAQFVE 344
>pdb|1XMX|A Chain A, Crystal Structure Of Protein Vc1899 From Vibrio Cholerae
Length = 385
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 774 RNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSD 833
++P+ P + H+ + S I+ +G ++Q+ ++ + N+ F + +GS+
Sbjct: 12 QDPVRLVTPLLDHRTV--SRHIIF--IGDHTQTVIYQRLSDVLNKRNISTDFFEIPAGSN 67
Query: 834 ASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFA 870
S +KS + EV F A RLL A
Sbjct: 68 TSAIKSAIRELAETLKARGEEVKFNASCGLRHRLLSA 104
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 1075 VLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134
L+F + K + LED++ + Y + G + DR + + F RS L++T
Sbjct: 279 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF--RSGKSPILVATAVA 336
Query: 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSS 1176
G++++ VI ++ L + HR+G+T V +
Sbjct: 337 ARGLDISNVKHVINFD------LPSDIEEYVHRIGRTGRVGN 372
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 1075 VLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134
L+F + K + LED++ + Y + G + DR + + F RS L++T
Sbjct: 49 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF--RSGKSPILVATAVA 106
Query: 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSS 1176
G++++ VI N L + HR+G+T V +
Sbjct: 107 ARGLDISNVKHVI------NFDLPSDIEEYVHRIGRTGRVGN 142
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 465 GLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV 497
G GKT+ + + HLA + N GP LV AP+++
Sbjct: 381 GTGKTVTSATIVYHLARQGN--GPVLVCAPSNI 411
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 465 GLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV 497
G GKT+ + + HLA + N GP LV AP+++
Sbjct: 204 GTGKTVTSATIVYHLARQGN--GPVLVCAPSNI 234
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 465 GLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV 497
G GKT+ + + HLA + N GP LV AP+++
Sbjct: 205 GTGKTVTSATIVYHLARQGN--GPVLVCAPSNI 235
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1023 LPVAKPALQLTYQIFGSCPPMQS--FDPAKLLTDSGKLQ 1059
LP A+P L+ Y++ G P + F+PAKLL D Q
Sbjct: 61 LPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQ 99
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 30.0 bits (66), Expect = 7.7, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 19/111 (17%)
Query: 78 GSLAAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTGNSSIP 137
GS A ++ + GP +V E R + R + P + L VSD +S +P
Sbjct: 109 GSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP 168
Query: 138 EGAAGSIQRSILS----------------EGGILQVYYVKVLEKGETYEII 172
+ GS+ R++L GG+L VY V + E +
Sbjct: 169 D---GSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEAL 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,434,289
Number of Sequences: 62578
Number of extensions: 1300268
Number of successful extensions: 2781
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2749
Number of HSP's gapped (non-prelim): 22
length of query: 1196
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1086
effective length of database: 8,089,757
effective search space: 8785476102
effective search space used: 8785476102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)