Query 000994
Match_columns 1196
No_of_seqs 455 out of 2549
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 12:49:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0388 SNF2 family DNA-depend 100.0 6E-243 1E-247 2047.9 60.3 1013 1-1192 150-1163(1185)
2 KOG0385 Chromatin remodeling c 100.0 2E-125 5E-130 1098.3 48.0 448 429-1192 159-608 (971)
3 KOG0391 SNF2 family DNA-depend 100.0 3E-116 7E-121 1040.8 41.4 701 425-1193 604-1397(1958)
4 KOG0384 Chromodomain-helicase 100.0 7E-108 2E-112 990.7 35.8 458 428-1192 361-820 (1373)
5 KOG0386 Chromatin remodeling c 100.0 2E-105 3E-110 954.8 40.6 579 251-1192 259-847 (1157)
6 KOG0389 SNF2 family DNA-depend 100.0 2E-104 3E-109 928.0 41.2 502 427-1191 388-896 (941)
7 KOG0387 Transcription-coupled 100.0 7E-101 2E-105 898.8 38.2 463 426-1193 195-668 (923)
8 PLN03142 Probable chromatin-re 100.0 7.3E-98 2E-102 939.9 52.4 449 427-1193 160-609 (1033)
9 KOG0392 SNF2 family DNA-depend 100.0 1.6E-93 3.6E-98 860.1 40.3 469 427-1193 966-1464(1549)
10 KOG1002 Nucleotide excision re 100.0 6E-80 1.3E-84 687.2 35.5 526 425-1193 173-759 (791)
11 KOG1015 Transcription regulato 100.0 1.3E-78 2.9E-83 711.3 36.9 564 423-1193 655-1287(1567)
12 KOG0390 DNA repair protein, SN 100.0 5.7E-78 1.2E-82 728.0 40.8 473 425-1193 227-717 (776)
13 KOG4439 RNA polymerase II tran 100.0 1.9E-73 4E-78 658.8 31.8 493 425-1193 314-868 (901)
14 COG0553 HepA Superfamily II DN 100.0 2.5E-72 5.3E-77 727.0 34.9 474 431-1193 333-832 (866)
15 KOG1016 Predicted DNA helicase 100.0 1.6E-65 3.5E-70 591.3 27.8 529 424-1193 242-859 (1387)
16 KOG1001 Helicase-like transcri 100.0 1.7E-58 3.6E-63 563.6 24.4 511 439-1193 135-660 (674)
17 KOG1000 Chromatin remodeling p 100.0 2.2E-56 4.7E-61 500.5 31.9 412 430-1191 192-611 (689)
18 KOG0383 Predicted helicase [Ge 100.0 9.8E-57 2.1E-61 539.8 8.8 295 428-740 284-594 (696)
19 PRK04914 ATP-dependent helicas 100.0 9.4E-52 2E-56 521.0 37.5 413 434-1191 150-613 (956)
20 PF00176 SNF2_N: SNF2 family N 100.0 6.2E-45 1.3E-49 413.3 23.9 281 440-739 1-299 (299)
21 PF13892 DBINO: DNA-binding do 100.0 1.9E-43 4.1E-48 344.7 16.6 137 192-328 2-138 (139)
22 KOG0298 DEAD box-containing he 100.0 3.2E-42 7E-47 421.6 21.7 268 454-740 373-692 (1394)
23 TIGR00603 rad25 DNA repair hel 100.0 2.1E-36 4.4E-41 370.8 31.6 133 1055-1193 479-617 (732)
24 PRK13766 Hef nuclease; Provisi 100.0 4.7E-31 1E-35 338.0 34.3 133 1054-1191 345-487 (773)
25 PHA02558 uvsW UvsW helicase; P 99.9 6.9E-24 1.5E-28 258.4 32.1 128 1055-1183 327-455 (501)
26 COG1111 MPH1 ERCC4-like helica 99.9 3.9E-22 8.5E-27 228.9 41.0 131 1053-1188 345-486 (542)
27 COG1061 SSL2 DNA or RNA helica 99.9 3.1E-23 6.7E-28 248.3 32.7 135 1055-1193 267-404 (442)
28 KOG1123 RNA polymerase II tran 99.9 5.2E-24 1.1E-28 240.4 19.2 127 1055-1187 526-657 (776)
29 TIGR00614 recQ_fam ATP-depende 99.8 1.4E-17 3.1E-22 201.8 29.1 105 1071-1177 225-329 (470)
30 PTZ00110 helicase; Provisional 99.8 1.4E-17 3.1E-22 204.7 28.7 126 1055-1184 360-485 (545)
31 PRK11776 ATP-dependent RNA hel 99.8 6E-17 1.3E-21 196.2 28.5 121 1057-1183 229-349 (460)
32 PRK01297 ATP-dependent RNA hel 99.8 9.2E-17 2E-21 195.3 29.9 123 1055-1183 320-442 (475)
33 PRK04837 ATP-dependent RNA hel 99.8 4.3E-17 9.3E-22 195.4 26.5 122 1056-1183 241-362 (423)
34 PRK11192 ATP-dependent RNA hel 99.8 9.3E-17 2E-21 193.2 29.3 117 1056-1176 231-347 (434)
35 TIGR01389 recQ ATP-dependent D 99.8 1.9E-16 4.1E-21 197.5 29.5 102 1072-1175 224-325 (591)
36 PRK10590 ATP-dependent RNA hel 99.7 1.8E-16 4E-21 191.6 27.7 108 1072-1183 245-352 (456)
37 PRK04537 ATP-dependent RNA hel 99.7 2.2E-16 4.9E-21 195.0 28.7 121 1056-1182 243-363 (572)
38 PRK11057 ATP-dependent DNA hel 99.7 3.4E-16 7.3E-21 195.1 30.1 103 1071-1175 235-337 (607)
39 PLN00206 DEAD-box ATP-dependen 99.7 2.2E-16 4.8E-21 193.5 27.7 124 1057-1184 352-476 (518)
40 KOG0354 DEAD-box like helicase 99.7 1.4E-15 3.1E-20 184.6 32.9 170 435-620 61-238 (746)
41 PTZ00424 helicase 45; Provisio 99.7 5.2E-16 1.1E-20 184.6 27.3 111 1072-1186 267-377 (401)
42 PRK11634 ATP-dependent RNA hel 99.7 1.1E-15 2.5E-20 190.0 29.0 117 1056-1176 231-347 (629)
43 PRK11448 hsdR type I restricti 99.7 4.2E-15 9.1E-20 193.4 33.8 106 1072-1180 698-815 (1123)
44 TIGR00643 recG ATP-dependent D 99.7 2.8E-15 6.2E-20 187.7 29.3 155 435-605 234-399 (630)
45 PRK10917 ATP-dependent DNA hel 99.7 5.9E-15 1.3E-19 186.1 27.6 154 435-604 260-421 (681)
46 PLN03137 ATP-dependent DNA hel 99.7 7.9E-15 1.7E-19 185.5 27.1 104 1072-1177 680-783 (1195)
47 cd00079 HELICc Helicase superf 99.7 5.1E-16 1.1E-20 154.0 12.0 121 1055-1177 11-131 (131)
48 PRK10689 transcription-repair 99.6 2.5E-14 5.3E-19 187.0 28.8 100 1072-1173 809-911 (1147)
49 PRK13767 ATP-dependent helicas 99.6 2.5E-14 5.4E-19 184.7 28.6 114 1063-1178 275-395 (876)
50 TIGR03817 DECH_helic helicase/ 99.6 6E-14 1.3E-18 177.9 31.4 118 1067-1188 266-391 (742)
51 TIGR00580 mfd transcription-re 99.6 2.5E-14 5.5E-19 183.2 27.7 109 1071-1183 659-770 (926)
52 PF04851 ResIII: Type III rest 99.6 5.8E-15 1.3E-19 155.1 12.3 161 435-603 2-183 (184)
53 PRK02362 ski2-like helicase; P 99.6 4.5E-13 9.7E-18 171.2 30.7 148 436-602 23-181 (737)
54 PRK01172 ski2-like helicase; P 99.6 7.8E-13 1.7E-17 167.6 28.8 146 436-602 22-179 (674)
55 KOG0331 ATP-dependent RNA heli 99.5 4.9E-13 1.1E-17 158.5 24.5 117 1055-1173 323-440 (519)
56 PRK00254 ski2-like helicase; P 99.5 2E-12 4.3E-17 164.8 29.9 147 436-602 23-179 (720)
57 TIGR01587 cas3_core CRISPR-ass 99.5 1.1E-12 2.4E-17 153.9 25.4 119 1057-1181 208-336 (358)
58 TIGR00348 hsdR type I site-spe 99.5 7.9E-12 1.7E-16 157.3 33.5 157 434-605 236-405 (667)
59 PF00271 Helicase_C: Helicase 99.5 8.3E-14 1.8E-18 126.7 6.6 78 1090-1169 1-78 (78)
60 COG0513 SrmB Superfamily II DN 99.5 4.8E-12 1E-16 154.8 23.7 121 1056-1182 259-379 (513)
61 TIGR03714 secA2 accessory Sec 99.4 4.6E-11 1E-15 148.5 31.1 119 1052-1175 404-531 (762)
62 smart00487 DEXDc DEAD-like hel 99.4 1.4E-12 3E-17 137.4 13.6 158 435-605 7-173 (201)
63 PRK09200 preprotein translocas 99.4 1.8E-10 4E-15 144.4 33.3 118 1053-1174 409-534 (790)
64 TIGR02621 cas3_GSU0051 CRISPR- 99.4 5.2E-11 1.1E-15 149.3 25.9 105 1070-1179 270-390 (844)
65 KOG0330 ATP-dependent RNA heli 99.4 2.8E-11 6.1E-16 135.6 20.8 124 1057-1186 287-410 (476)
66 cd00046 DEXDc DEAD-like helica 99.4 4.2E-12 9.1E-17 125.8 11.5 136 457-602 2-144 (144)
67 smart00490 HELICc helicase sup 99.3 2.7E-12 5.9E-17 116.4 8.5 81 1087-1169 2-82 (82)
68 PHA02653 RNA helicase NPH-II; 99.3 2.8E-10 6E-15 141.9 27.8 113 1071-1186 394-517 (675)
69 KOG0350 DEAD-box ATP-dependent 99.3 3.5E-11 7.6E-16 138.3 17.3 118 1060-1183 419-540 (620)
70 PRK12898 secA preprotein trans 99.3 2.5E-09 5.5E-14 131.7 33.0 117 1053-1173 454-578 (656)
71 PRK09401 reverse gyrase; Revie 99.3 4.3E-10 9.4E-15 148.0 27.1 102 1056-1166 315-429 (1176)
72 PRK09751 putative ATP-dependen 99.3 4.6E-10 1E-14 148.4 27.1 68 1099-1168 304-371 (1490)
73 TIGR00963 secA preprotein tran 99.3 2.8E-10 6.1E-15 140.8 22.1 120 1053-1176 386-512 (745)
74 PRK05580 primosome assembly pr 99.2 4.4E-09 9.5E-14 132.9 31.4 153 436-603 144-305 (679)
75 TIGR03158 cas3_cyano CRISPR-as 99.2 3.4E-09 7.3E-14 124.5 26.0 84 1071-1165 271-356 (357)
76 COG1201 Lhr Lhr-like helicases 99.2 4.5E-09 9.7E-14 131.6 28.3 119 1063-1187 244-364 (814)
77 COG0514 RecQ Superfamily II DN 99.2 5.9E-09 1.3E-13 126.3 26.1 103 1072-1176 230-332 (590)
78 COG1200 RecG RecG-like helicas 99.1 3.7E-09 8E-14 127.8 23.6 158 435-608 261-427 (677)
79 TIGR01054 rgy reverse gyrase. 99.1 1.6E-09 3.4E-14 142.9 21.8 128 436-578 78-213 (1171)
80 COG4096 HsdR Type I site-speci 99.1 1.2E-10 2.7E-15 141.8 9.5 158 427-604 156-322 (875)
81 COG1205 Distinct helicase fami 99.1 1E-08 2.2E-13 131.4 26.5 116 1056-1173 290-414 (851)
82 PF11496 HDA2-3: Class II hist 99.1 1.1E-09 2.4E-14 124.3 15.6 139 1052-1191 92-253 (297)
83 KOG0348 ATP-dependent RNA heli 99.1 2.6E-08 5.6E-13 115.8 25.9 117 1058-1176 409-549 (708)
84 TIGR00595 priA primosomal prot 99.1 1.4E-08 3E-13 124.2 24.5 92 1086-1179 272-379 (505)
85 KOG0335 ATP-dependent RNA heli 99.1 6.6E-09 1.4E-13 121.9 20.4 104 1073-1178 338-441 (482)
86 KOG0345 ATP-dependent RNA heli 99.0 3.7E-08 8.1E-13 113.3 24.2 120 1055-1178 240-361 (567)
87 COG4889 Predicted helicase [Ge 99.0 5.6E-09 1.2E-13 126.0 18.2 160 434-602 159-350 (1518)
88 PF00270 DEAD: DEAD/DEAH box h 99.0 1.8E-09 4E-14 112.2 12.4 157 439-609 2-168 (169)
89 cd00268 DEADc DEAD-box helicas 99.0 2.5E-09 5.5E-14 115.1 13.8 155 436-603 21-185 (203)
90 COG1204 Superfamily II helicas 99.0 8.2E-09 1.8E-13 130.6 20.1 150 436-602 31-190 (766)
91 PRK09694 helicase Cas3; Provis 99.0 7.1E-08 1.5E-12 123.5 28.4 99 1070-1171 558-665 (878)
92 PRK14701 reverse gyrase; Provi 99.0 3.9E-08 8.5E-13 132.6 25.8 129 436-578 79-214 (1638)
93 PRK13104 secA preprotein trans 99.0 3.7E-07 8E-12 115.1 31.8 122 1052-1177 424-583 (896)
94 TIGR01970 DEAH_box_HrpB ATP-de 98.9 7.6E-08 1.6E-12 123.1 23.3 109 1072-1185 209-338 (819)
95 PRK12906 secA preprotein trans 98.9 3.6E-07 7.7E-12 114.6 27.1 120 1053-1176 421-548 (796)
96 KOG4284 DEAD box protein [Tran 98.8 3.4E-08 7.4E-13 116.6 14.6 121 1057-1183 259-379 (980)
97 PRK13107 preprotein translocas 98.8 3E-06 6.6E-11 106.7 32.3 121 1052-1176 429-586 (908)
98 PRK12904 preprotein translocas 98.8 1.5E-06 3.2E-11 109.7 29.4 121 1053-1177 411-569 (830)
99 PRK11664 ATP-dependent RNA hel 98.8 1.3E-06 2.9E-11 112.0 28.7 114 1071-1186 211-342 (812)
100 KOG0342 ATP-dependent RNA heli 98.8 2.1E-07 4.6E-12 107.9 18.0 114 1056-1172 315-428 (543)
101 KOG0343 RNA Helicase [RNA proc 98.8 5.5E-07 1.2E-11 105.3 20.9 129 1056-1191 299-429 (758)
102 COG1197 Mfd Transcription-repa 98.7 1.3E-06 2.9E-11 111.4 23.9 158 434-607 592-757 (1139)
103 KOG0339 ATP-dependent RNA heli 98.7 9.4E-07 2E-11 102.4 19.9 127 1055-1186 452-578 (731)
104 COG1202 Superfamily II helicas 98.7 6E-07 1.3E-11 105.4 18.5 107 1074-1183 442-553 (830)
105 KOG0338 ATP-dependent RNA heli 98.6 1.2E-06 2.7E-11 101.6 19.2 113 1059-1175 415-528 (691)
106 KOG0333 U5 snRNP-like RNA heli 98.6 1.4E-07 3.1E-12 109.6 11.3 126 1051-1183 498-624 (673)
107 KOG0328 Predicted ATP-dependen 98.6 1.7E-07 3.6E-12 101.7 9.9 123 1057-1185 253-375 (400)
108 COG4098 comFA Superfamily II D 98.6 1.3E-05 2.8E-10 89.8 24.4 147 433-603 94-244 (441)
109 PRK11131 ATP-dependent RNA hel 98.5 1.4E-05 3E-10 105.2 26.9 112 1072-1187 286-415 (1294)
110 KOG0334 RNA helicase [RNA proc 98.5 3.9E-06 8.5E-11 105.5 19.9 124 1054-1182 596-719 (997)
111 KOG0952 DNA/RNA helicase MER3/ 98.5 1.7E-05 3.8E-10 99.2 23.7 151 451-620 122-298 (1230)
112 PF13872 AAA_34: P-loop contai 98.4 6E-06 1.3E-10 92.8 16.4 232 434-696 35-302 (303)
113 PRK12899 secA preprotein trans 98.4 0.00058 1.3E-08 86.9 34.8 120 1053-1176 549-676 (970)
114 KOG0351 ATP-dependent DNA heli 98.4 9.5E-06 2.1E-10 104.2 19.1 105 1072-1178 485-589 (941)
115 PRK05298 excinuclease ABC subu 98.4 3E-06 6.6E-11 107.0 14.5 124 1055-1183 429-557 (652)
116 PRK12326 preprotein translocas 98.3 0.00039 8.4E-09 86.4 30.9 121 1053-1177 408-543 (764)
117 COG1203 CRISPR-associated heli 98.3 4E-05 8.7E-10 98.2 23.0 115 1072-1191 440-560 (733)
118 TIGR00631 uvrb excinuclease AB 98.3 5.7E-06 1.2E-10 104.0 14.6 125 1055-1184 425-554 (655)
119 KOG0326 ATP-dependent RNA heli 98.3 1.1E-06 2.5E-11 96.8 6.1 117 1051-1171 303-419 (459)
120 TIGR00596 rad1 DNA repair prot 98.2 0.00023 4.9E-09 91.1 25.5 42 1053-1094 267-317 (814)
121 KOG0336 ATP-dependent RNA heli 98.1 5.1E-06 1.1E-10 94.2 7.7 126 1053-1183 447-572 (629)
122 KOG0332 ATP-dependent RNA heli 98.1 1.3E-05 2.9E-10 90.4 10.7 114 1055-1172 315-434 (477)
123 PRK15483 type III restriction- 98.1 1E-05 2.2E-10 103.3 11.0 193 438-639 8-279 (986)
124 KOG0341 DEAD-box protein abstr 98.0 1.9E-05 4.1E-10 89.1 9.6 130 1055-1191 407-536 (610)
125 PRK12900 secA preprotein trans 98.0 6.4E-05 1.4E-09 95.6 13.7 128 1043-1174 567-704 (1025)
126 PRK13103 secA preprotein trans 97.9 0.0049 1.1E-07 78.6 29.8 122 1052-1177 429-587 (913)
127 KOG0352 ATP-dependent DNA heli 97.9 0.0017 3.7E-08 74.8 22.1 101 1076-1178 259-359 (641)
128 COG1198 PriA Primosomal protei 97.9 0.003 6.5E-08 79.7 26.0 155 435-603 197-360 (730)
129 KOG0340 ATP-dependent RNA heli 97.8 6.2E-05 1.4E-09 84.7 9.9 139 1052-1192 233-376 (442)
130 PF07652 Flavi_DEAD: Flaviviru 97.8 0.00017 3.7E-09 72.9 10.5 130 455-604 4-138 (148)
131 KOG0344 ATP-dependent RNA heli 97.7 0.00021 4.6E-09 85.4 11.9 121 1053-1177 370-492 (593)
132 PRK12903 secA preprotein trans 97.7 0.026 5.6E-07 71.7 30.1 122 1052-1177 406-535 (925)
133 PF13871 Helicase_C_4: Helicas 97.7 6.7E-05 1.5E-09 84.2 6.7 76 1113-1190 52-135 (278)
134 COG0610 Type I site-specific r 97.7 0.00025 5.3E-09 93.1 12.9 143 454-609 272-420 (962)
135 KOG1513 Nuclear helicase MOP-3 97.6 0.0026 5.6E-08 77.8 19.5 243 429-697 257-537 (1300)
136 KOG0327 Translation initiation 97.5 0.0003 6.4E-09 80.5 9.1 121 1057-1185 252-372 (397)
137 smart00488 DEXDc2 DEAD-like he 97.5 0.00058 1.3E-08 78.2 11.2 72 436-507 8-83 (289)
138 smart00489 DEXDc3 DEAD-like he 97.5 0.00058 1.3E-08 78.2 11.2 72 436-507 8-83 (289)
139 PF13086 AAA_11: AAA domain; P 97.5 0.00097 2.1E-08 72.6 12.4 68 436-507 1-75 (236)
140 KOG0949 Predicted helicase, DE 97.5 0.079 1.7E-06 67.1 29.3 162 436-615 511-682 (1330)
141 PRK12901 secA preprotein trans 97.4 0.07 1.5E-06 68.9 29.1 120 1053-1176 609-736 (1112)
142 TIGR01967 DEAH_box_HrpA ATP-de 97.4 0.00094 2E-08 88.7 12.2 124 1057-1187 263-408 (1283)
143 COG4581 Superfamily II RNA hel 97.3 0.0017 3.7E-08 83.8 13.4 147 433-602 116-270 (1041)
144 COG1110 Reverse gyrase [DNA re 97.3 0.0014 3.1E-08 82.7 11.9 125 436-576 82-215 (1187)
145 KOG0953 Mitochondrial RNA heli 97.3 0.00078 1.7E-08 79.9 9.0 111 1057-1171 341-464 (700)
146 TIGR01407 dinG_rel DnaQ family 97.3 0.00099 2.2E-08 87.2 11.1 112 1060-1176 661-809 (850)
147 KOG0353 ATP-dependent DNA heli 97.3 0.0028 6.1E-08 71.7 12.8 189 435-638 93-313 (695)
148 KOG0951 RNA helicase BRR2, DEA 97.2 0.015 3.3E-07 74.9 19.4 154 454-623 324-503 (1674)
149 TIGR00604 rad3 DNA repair heli 97.2 0.0022 4.8E-08 82.4 12.6 72 436-507 10-82 (705)
150 PF02562 PhoH: PhoH-like prote 97.2 0.0019 4E-08 70.0 10.0 154 437-608 5-161 (205)
151 TIGR03117 cas_csf4 CRISPR-asso 97.1 0.0024 5.2E-08 79.8 11.8 68 441-509 2-70 (636)
152 PRK10536 hypothetical protein; 97.0 0.0027 5.9E-08 70.7 10.0 154 436-607 59-217 (262)
153 KOG0947 Cytoplasmic exosomal R 97.0 0.0033 7.1E-08 78.7 10.5 142 434-602 295-444 (1248)
154 KOG0349 Putative DEAD-box RNA 96.6 0.0061 1.3E-07 70.3 8.8 96 1072-1169 505-606 (725)
155 KOG1802 RNA helicase nonsense 96.5 0.0086 1.9E-07 72.5 8.9 74 436-517 410-484 (935)
156 CHL00122 secA preprotein trans 96.4 0.76 1.6E-05 59.2 25.9 84 1053-1139 405-489 (870)
157 KOG1803 DNA helicase [Replicat 96.2 0.019 4.1E-07 69.6 10.1 160 432-604 181-393 (649)
158 PF13401 AAA_22: AAA domain; P 96.2 0.0079 1.7E-07 59.7 5.6 115 455-602 4-125 (131)
159 KOG0347 RNA helicase [RNA proc 96.2 0.0065 1.4E-07 72.3 5.5 100 1074-1176 465-564 (731)
160 COG0556 UvrB Helicase subunit 96.0 0.052 1.1E-06 64.9 12.2 115 1056-1172 430-549 (663)
161 COG3587 Restriction endonuclea 96.0 0.027 5.8E-07 70.5 10.0 135 454-602 73-242 (985)
162 KOG0337 ATP-dependent RNA heli 96.0 0.011 2.3E-07 68.6 6.1 124 1055-1183 245-368 (529)
163 PRK08074 bifunctional ATP-depe 96.0 0.037 8E-07 73.3 11.9 116 1059-1176 738-888 (928)
164 PRK07246 bifunctional ATP-depe 96.0 0.029 6.3E-07 73.1 10.8 87 1059-1150 634-722 (820)
165 PRK14873 primosome assembly pr 95.9 0.021 4.6E-07 72.4 9.1 126 465-603 170-304 (665)
166 KOG0948 Nuclear exosomal RNA h 95.9 0.036 7.8E-07 68.2 10.2 144 431-602 124-276 (1041)
167 TIGR00376 DNA helicase, putati 95.7 0.068 1.5E-06 67.8 12.5 68 434-507 155-223 (637)
168 KOG0328 Predicted ATP-dependen 95.6 0.026 5.6E-07 62.4 6.7 165 440-622 53-226 (400)
169 PF13604 AAA_30: AAA domain; P 95.3 0.22 4.8E-06 53.8 13.1 58 436-498 1-58 (196)
170 KOG0346 RNA helicase [RNA proc 95.3 0.067 1.4E-06 62.6 9.2 118 1056-1176 253-405 (569)
171 PF07517 SecA_DEAD: SecA DEAD- 95.1 0.19 4E-06 56.9 11.8 152 435-611 76-266 (266)
172 COG0556 UvrB Helicase subunit 94.8 0.062 1.3E-06 64.3 7.4 69 440-514 16-86 (663)
173 KOG1131 RNA polymerase II tran 94.7 0.28 6E-06 58.6 12.2 60 436-495 16-75 (755)
174 KOG0347 RNA helicase [RNA proc 94.7 0.061 1.3E-06 64.4 6.8 111 458-577 222-353 (731)
175 PF09848 DUF2075: Uncharacteri 94.6 0.1 2.3E-06 61.5 8.8 45 459-504 5-49 (352)
176 KOG0340 ATP-dependent RNA heli 94.6 0.14 3E-06 58.7 9.0 150 437-602 30-194 (442)
177 KOG1805 DNA replication helica 94.3 0.23 5E-06 63.3 10.9 173 416-604 646-831 (1100)
178 TIGR01447 recD exodeoxyribonuc 94.2 0.31 6.7E-06 61.3 12.0 139 439-604 148-297 (586)
179 PRK11747 dinG ATP-dependent DN 94.1 0.24 5.1E-06 63.8 11.1 114 1058-1176 520-669 (697)
180 cd00009 AAA The AAA+ (ATPases 94.0 0.5 1.1E-05 46.6 11.0 55 444-501 6-62 (151)
181 TIGR01967 DEAH_box_HrpA ATP-de 93.4 0.25 5.3E-06 66.6 9.5 138 450-603 77-222 (1283)
182 TIGR01448 recD_rel helicase, p 93.3 0.49 1.1E-05 61.1 11.7 135 434-605 321-455 (720)
183 PRK04296 thymidine kinase; Pro 93.1 0.17 3.7E-06 54.4 6.3 34 458-494 5-38 (190)
184 KOG0336 ATP-dependent RNA heli 92.8 0.27 5.9E-06 57.0 7.3 147 454-610 256-415 (629)
185 PRK10875 recD exonuclease V su 92.1 0.74 1.6E-05 58.2 10.9 141 438-605 154-304 (615)
186 KOG1132 Helicase of the DEAD s 92.1 0.57 1.2E-05 59.5 9.6 44 430-473 15-58 (945)
187 KOG0326 ATP-dependent RNA heli 92.1 0.33 7.1E-06 54.9 6.7 129 462-601 129-267 (459)
188 KOG4150 Predicted ATP-dependen 91.8 0.38 8.2E-06 57.8 7.2 130 1054-1187 507-644 (1034)
189 PF13307 Helicase_C_2: Helicas 91.0 0.87 1.9E-05 47.9 8.4 102 1069-1176 6-145 (167)
190 KOG0341 DEAD-box protein abstr 91.0 0.096 2.1E-06 60.1 1.3 132 462-602 214-367 (610)
191 smart00382 AAA ATPases associa 90.9 0.65 1.4E-05 45.2 7.1 46 456-504 3-48 (148)
192 TIGR02881 spore_V_K stage V sp 90.8 0.79 1.7E-05 51.7 8.5 25 457-481 44-68 (261)
193 PRK07003 DNA polymerase III su 90.5 1 2.2E-05 57.4 9.6 42 441-482 21-65 (830)
194 KOG0337 ATP-dependent RNA heli 90.4 0.68 1.5E-05 54.3 7.4 130 463-602 66-205 (529)
195 COG0653 SecA Preprotein transl 89.8 76 0.0017 41.4 28.3 113 1053-1169 410-533 (822)
196 COG0553 HepA Superfamily II DN 89.5 0.31 6.7E-06 64.2 4.3 181 434-624 82-289 (866)
197 COG1875 NYN ribonuclease and A 89.3 1.3 2.9E-05 51.4 8.5 57 437-496 229-286 (436)
198 PRK14956 DNA polymerase III su 88.7 1.9 4.1E-05 52.7 9.8 42 441-482 23-67 (484)
199 PLN03025 replication factor C 88.7 3.3 7.1E-05 48.3 11.6 41 441-481 18-60 (319)
200 PF06733 DEAD_2: DEAD_2; Inte 88.5 0.22 4.8E-06 52.6 1.6 38 541-578 118-159 (174)
201 PHA02533 17 large terminase pr 88.4 1.6 3.4E-05 54.4 9.2 156 435-613 58-221 (534)
202 KOG0333 U5 snRNP-like RNA heli 88.2 1.2 2.5E-05 53.8 7.3 128 437-578 268-410 (673)
203 TIGR00631 uvrb excinuclease AB 87.7 1.2 2.7E-05 56.7 7.8 74 438-517 11-86 (655)
204 COG1199 DinG Rad3-related DNA 87.6 3.7 8.1E-05 52.6 12.2 113 1060-1176 466-612 (654)
205 KOG0950 DNA polymerase theta/e 87.5 4.1 8.8E-05 52.6 11.8 144 453-611 238-396 (1008)
206 PRK14949 DNA polymerase III su 87.3 1.9 4.2E-05 56.0 9.1 24 459-482 42-65 (944)
207 TIGR03420 DnaA_homol_Hda DnaA 87.2 6 0.00013 43.2 11.9 43 455-501 38-80 (226)
208 PHA03333 putative ATPase subun 87.0 3 6.6E-05 52.5 10.2 135 442-603 175-332 (752)
209 PRK09112 DNA polymerase III su 86.8 2.2 4.7E-05 50.5 8.7 43 440-482 27-72 (351)
210 PRK12402 replication factor C 86.8 1.9 4.1E-05 50.2 8.2 41 441-481 20-62 (337)
211 TIGR01407 dinG_rel DnaQ family 86.7 4 8.7E-05 54.0 12.0 68 436-506 245-314 (850)
212 TIGR02880 cbbX_cfxQ probable R 86.6 1.5 3.3E-05 50.2 7.0 38 456-493 59-97 (284)
213 PF05876 Terminase_GpA: Phage 86.4 1.5 3.3E-05 54.9 7.5 171 429-614 9-191 (557)
214 PRK14961 DNA polymerase III su 86.3 2.1 4.5E-05 50.9 8.2 42 440-481 20-64 (363)
215 PF07529 HSA: HSA; InterPro: 86.2 2.9 6.3E-05 37.5 7.3 37 254-290 36-72 (73)
216 KOG0329 ATP-dependent RNA heli 86.2 0.8 1.7E-05 50.3 4.2 82 1052-1172 265-346 (387)
217 PRK08084 DNA replication initi 86.2 6 0.00013 44.0 11.4 26 456-481 46-71 (235)
218 COG3421 Uncharacterized protei 86.0 0.93 2E-05 55.3 5.0 108 462-577 4-125 (812)
219 PRK12723 flagellar biosynthesi 85.9 7.5 0.00016 46.6 12.5 131 457-619 176-314 (388)
220 PF02399 Herpes_ori_bp: Origin 85.5 1.9 4.1E-05 55.2 7.5 126 459-602 53-190 (824)
221 PRK06526 transposase; Provisio 85.5 1.9 4.2E-05 48.5 7.1 56 441-507 88-143 (254)
222 KOG0925 mRNA splicing factor A 85.5 2.1 4.5E-05 51.2 7.3 40 451-494 58-97 (699)
223 PRK14955 DNA polymerase III su 85.3 8.5 0.00018 46.3 12.9 42 441-482 21-65 (397)
224 cd01124 KaiC KaiC is a circadi 85.3 2 4.4E-05 45.3 6.8 48 458-508 2-49 (187)
225 PRK12902 secA preprotein trans 85.3 3.3 7.1E-05 53.7 9.6 133 436-602 85-232 (939)
226 PF12340 DUF3638: Protein of u 85.3 1.8 3.8E-05 47.8 6.4 71 435-508 22-92 (229)
227 PF06862 DUF1253: Protein of u 85.2 11 0.00023 45.9 13.3 127 1055-1182 280-414 (442)
228 PRK12900 secA preprotein trans 85.1 4.9 0.00011 52.7 11.1 133 436-601 138-284 (1025)
229 KOG0329 ATP-dependent RNA heli 85.0 0.49 1.1E-05 51.9 1.9 106 459-576 83-197 (387)
230 KOG0346 RNA helicase [RNA proc 85.0 3.6 7.8E-05 48.8 8.8 140 454-602 55-211 (569)
231 PF02399 Herpes_ori_bp: Origin 84.8 8.4 0.00018 49.6 12.7 112 1056-1177 267-384 (824)
232 CHL00181 cbbX CbbX; Provisiona 84.8 2.2 4.8E-05 49.0 7.2 37 457-493 61-98 (287)
233 PRK07940 DNA polymerase III su 84.7 2.1 4.6E-05 51.3 7.3 25 458-482 39-63 (394)
234 TIGR03015 pepcterm_ATPase puta 84.5 8.2 0.00018 43.3 11.7 43 438-480 25-68 (269)
235 PRK08181 transposase; Validate 83.9 4.8 0.0001 45.8 9.3 46 437-482 88-133 (269)
236 PRK14958 DNA polymerase III su 83.9 3.6 7.7E-05 51.2 9.0 42 441-482 21-65 (509)
237 PRK12323 DNA polymerase III su 83.7 4.6 0.0001 51.0 9.7 24 459-482 42-65 (700)
238 TIGR02562 cas3_yersinia CRISPR 83.6 5.6 0.00012 52.5 10.7 174 437-611 409-643 (1110)
239 PF05621 TniB: Bacterial TniB 83.6 9.4 0.0002 43.9 11.4 141 429-602 33-189 (302)
240 PRK07994 DNA polymerase III su 83.5 3.2 6.9E-05 52.7 8.4 42 441-482 21-65 (647)
241 KOG0344 ATP-dependent RNA heli 83.4 1.3 2.9E-05 54.0 4.7 131 437-579 159-303 (593)
242 COG1643 HrpA HrpA-like helicas 83.4 25 0.00053 46.2 16.3 143 448-610 58-213 (845)
243 smart00573 HSA domain in helic 82.9 5.6 0.00012 36.0 7.5 36 253-288 35-70 (73)
244 PRK14960 DNA polymerase III su 82.8 5.7 0.00012 50.4 10.0 38 445-482 24-64 (702)
245 KOG0388 SNF2 family DNA-depend 81.9 32 0.0007 43.3 15.3 159 212-390 368-533 (1185)
246 PRK08074 bifunctional ATP-depe 81.8 8 0.00017 51.7 11.6 67 436-504 257-325 (928)
247 PRK05298 excinuclease ABC subu 81.8 3.7 8.1E-05 52.6 8.2 77 435-517 11-89 (652)
248 PRK07952 DNA replication prote 81.6 12 0.00026 42.1 11.2 61 440-507 80-144 (244)
249 PRK05707 DNA polymerase III su 81.6 3.9 8.5E-05 47.9 7.7 48 436-483 3-50 (328)
250 PRK08769 DNA polymerase III su 81.5 12 0.00025 43.8 11.4 49 435-483 3-54 (319)
251 TIGR02928 orc1/cdc6 family rep 81.5 9.4 0.0002 45.0 11.0 45 438-482 20-67 (365)
252 PRK11747 dinG ATP-dependent DN 81.3 11 0.00024 48.8 12.3 38 541-578 218-260 (697)
253 PRK14963 DNA polymerase III su 81.3 5.3 0.00011 49.6 9.0 42 441-482 19-63 (504)
254 PF13245 AAA_19: Part of AAA d 81.3 4 8.8E-05 37.2 6.0 42 458-500 13-56 (76)
255 COG3267 ExeA Type II secretory 81.2 6.1 0.00013 44.2 8.4 47 457-507 53-105 (269)
256 PRK14974 cell division protein 81.0 17 0.00036 42.8 12.6 47 458-507 143-193 (336)
257 cd01121 Sms Sms (bacterial rad 80.8 12 0.00026 44.7 11.5 102 443-577 69-171 (372)
258 COG0464 SpoVK ATPases of the A 80.8 6.1 0.00013 48.9 9.5 67 436-508 249-323 (494)
259 PRK14948 DNA polymerase III su 80.3 5 0.00011 51.0 8.6 42 441-482 21-65 (620)
260 PF13177 DNA_pol3_delta2: DNA 79.8 23 0.0005 37.0 12.0 45 441-485 2-49 (162)
261 PRK08116 hypothetical protein; 79.7 11 0.00025 42.7 10.5 36 455-493 114-149 (268)
262 TIGR00604 rad3 DNA repair heli 79.7 13 0.00028 48.3 12.3 96 1059-1155 508-618 (705)
263 PRK14969 DNA polymerase III su 79.4 5 0.00011 50.1 8.0 43 440-482 20-65 (527)
264 PRK09111 DNA polymerase III su 79.1 19 0.00041 45.7 13.0 43 440-482 28-73 (598)
265 PHA02544 44 clamp loader, smal 79.0 14 0.00029 42.8 11.1 40 564-603 100-141 (316)
266 PRK11889 flhF flagellar biosyn 78.6 17 0.00038 43.5 11.6 123 458-617 244-377 (436)
267 PRK00440 rfc replication facto 78.3 44 0.00096 38.3 15.1 39 442-480 23-63 (319)
268 PRK06645 DNA polymerase III su 78.3 6.1 0.00013 49.0 8.2 43 440-482 25-70 (507)
269 COG1199 DinG Rad3-related DNA 78.2 6 0.00013 50.8 8.6 68 435-504 14-82 (654)
270 PRK14957 DNA polymerase III su 78.1 5.7 0.00012 49.7 7.9 42 441-482 21-65 (546)
271 PRK08451 DNA polymerase III su 78.1 19 0.0004 45.1 12.2 39 444-482 22-63 (535)
272 TIGR02768 TraA_Ti Ti-type conj 78.0 13 0.00028 48.6 11.4 59 435-499 351-409 (744)
273 PRK06871 DNA polymerase III su 77.9 11 0.00024 44.2 9.7 47 437-483 3-52 (325)
274 PRK05703 flhF flagellar biosyn 77.8 17 0.00038 44.1 11.8 55 564-619 299-359 (424)
275 PRK14962 DNA polymerase III su 77.0 5.6 0.00012 48.9 7.4 24 458-481 39-62 (472)
276 KOG0926 DEAH-box RNA helicase 76.6 8 0.00017 49.1 8.3 143 448-609 264-431 (1172)
277 KOG0922 DEAH-box RNA helicase 76.6 8.3 0.00018 48.2 8.5 111 1074-1190 260-396 (674)
278 PRK08691 DNA polymerase III su 76.5 14 0.0003 47.3 10.6 42 441-482 21-65 (709)
279 PRK14951 DNA polymerase III su 76.2 6.5 0.00014 49.8 7.8 42 441-482 21-65 (618)
280 PRK07764 DNA polymerase III su 76.2 8.8 0.00019 50.4 9.2 25 458-482 40-64 (824)
281 KOG0740 AAA+-type ATPase [Post 75.9 4.6 9.9E-05 48.5 6.0 46 457-508 188-233 (428)
282 KOG0738 AAA+-type ATPase [Post 75.9 6.5 0.00014 46.3 6.9 61 427-508 232-292 (491)
283 PRK14952 DNA polymerase III su 75.8 7.8 0.00017 48.9 8.3 42 441-482 18-62 (584)
284 PRK06893 DNA replication initi 75.3 27 0.00058 38.6 11.6 25 458-482 42-66 (229)
285 KOG0951 RNA helicase BRR2, DEA 75.1 7.7 0.00017 51.5 7.9 132 453-604 1157-1300(1674)
286 PRK08727 hypothetical protein; 74.3 14 0.00031 41.0 9.1 25 458-482 44-68 (233)
287 TIGR02397 dnaX_nterm DNA polym 73.8 22 0.00047 41.7 11.1 42 441-482 19-63 (355)
288 PRK08058 DNA polymerase III su 73.8 13 0.00028 43.6 9.0 132 439-601 9-148 (329)
289 PRK06835 DNA replication prote 73.8 27 0.00059 41.0 11.6 47 436-482 160-210 (329)
290 KOG0922 DEAH-box RNA helicase 73.3 11 0.00023 47.3 8.2 133 448-602 59-205 (674)
291 KOG0989 Replication factor C, 73.0 12 0.00026 43.0 7.9 42 440-481 40-83 (346)
292 PRK14964 DNA polymerase III su 72.7 12 0.00026 46.2 8.6 42 442-483 19-63 (491)
293 PRK05642 DNA replication initi 72.7 33 0.00072 38.1 11.5 24 457-480 47-70 (234)
294 PRK14087 dnaA chromosomal repl 72.6 21 0.00045 43.8 10.7 47 457-504 143-189 (450)
295 PRK14950 DNA polymerase III su 72.3 10 0.00022 48.0 8.3 42 440-481 20-64 (585)
296 KOG0298 DEAD box-containing he 71.9 1.5 3.4E-05 57.7 0.9 133 1054-1192 1201-1335(1394)
297 PRK05563 DNA polymerase III su 71.6 12 0.00025 47.3 8.4 26 458-483 41-66 (559)
298 TIGR03345 VI_ClpV1 type VI sec 71.6 18 0.00039 48.0 10.4 37 445-481 196-234 (852)
299 PRK14953 DNA polymerase III su 71.5 11 0.00023 46.7 7.9 42 440-481 20-64 (486)
300 PRK00149 dnaA chromosomal repl 71.4 19 0.00041 44.1 10.1 47 457-504 150-196 (450)
301 KOG0920 ATP-dependent RNA heli 70.7 18 0.0004 47.5 9.9 146 451-612 184-339 (924)
302 PRK07993 DNA polymerase III su 70.5 16 0.00035 42.9 8.8 48 436-483 2-52 (334)
303 PF13173 AAA_14: AAA domain 70.3 21 0.00045 35.5 8.4 94 454-601 1-97 (128)
304 KOG0018 Structural maintenance 69.9 3.9E+02 0.0084 35.9 22.7 68 195-264 750-817 (1141)
305 TIGR00362 DnaA chromosomal rep 69.8 23 0.0005 42.7 10.2 25 458-482 139-163 (405)
306 KOG0353 ATP-dependent DNA heli 69.4 13 0.00028 43.1 7.2 88 1072-1161 317-404 (695)
307 PRK11823 DNA repair protein Ra 69.1 20 0.00044 43.8 9.6 62 443-507 67-129 (446)
308 PRK06921 hypothetical protein; 69.0 37 0.00081 38.6 11.1 28 455-482 117-144 (266)
309 TIGR01074 rep ATP-dependent DN 69.0 1.6E+02 0.0035 37.9 18.2 66 437-508 2-69 (664)
310 PRK00411 cdc6 cell division co 68.8 77 0.0017 37.8 14.4 46 438-483 35-83 (394)
311 PRK05896 DNA polymerase III su 68.8 16 0.00035 46.1 8.6 43 441-483 21-66 (605)
312 PTZ00266 NIMA-related protein 68.8 19 0.00041 48.1 9.7 10 597-606 722-731 (1021)
313 cd01120 RecA-like_NTPases RecA 68.0 30 0.00064 34.8 9.3 34 459-495 3-36 (165)
314 PRK07471 DNA polymerase III su 67.8 24 0.00053 42.0 9.6 44 440-483 23-69 (365)
315 PRK06904 replicative DNA helic 67.4 54 0.0012 40.5 12.8 62 445-508 211-272 (472)
316 PF00448 SRP54: SRP54-type pro 67.4 27 0.00059 37.8 9.2 130 459-620 5-143 (196)
317 PRK14959 DNA polymerase III su 67.4 16 0.00035 46.3 8.3 38 445-482 25-65 (624)
318 PRK08903 DnaA regulatory inact 67.1 42 0.0009 36.8 10.8 28 454-481 41-68 (227)
319 COG4096 HsdR Type I site-speci 66.8 37 0.0008 43.9 11.1 109 1058-1168 406-525 (875)
320 PRK13342 recombination factor 66.7 30 0.00065 41.9 10.3 22 457-478 38-59 (413)
321 PF00004 AAA: ATPase family as 66.6 14 0.0003 36.1 6.3 36 459-500 2-37 (132)
322 PF00580 UvrD-helicase: UvrD/R 66.4 12 0.00025 42.7 6.5 55 437-497 1-56 (315)
323 PRK05986 cob(I)alamin adenolsy 66.4 69 0.0015 34.7 11.7 141 454-613 21-168 (191)
324 PRK14088 dnaA chromosomal repl 66.0 58 0.0013 39.9 12.6 36 457-493 132-167 (440)
325 TIGR00595 priA primosomal prot 65.4 44 0.00094 41.7 11.5 96 1052-1150 5-101 (505)
326 PRK13889 conjugal transfer rel 65.2 34 0.00074 45.9 11.0 58 436-499 346-403 (988)
327 COG1702 PhoH Phosphate starvat 65.2 8.3 0.00018 44.9 4.8 41 564-607 243-284 (348)
328 PRK12422 chromosomal replicati 64.9 24 0.00051 43.3 9.0 34 457-493 143-176 (445)
329 PRK14965 DNA polymerase III su 64.8 17 0.00037 46.0 7.9 43 441-483 21-66 (576)
330 COG1484 DnaC DNA replication p 64.7 21 0.00045 40.4 7.8 63 440-505 90-152 (254)
331 PRK06090 DNA polymerase III su 64.6 39 0.00085 39.5 10.3 48 436-483 3-53 (319)
332 PRK05580 primosome assembly pr 64.6 46 0.001 43.1 11.9 96 1052-1150 170-266 (679)
333 PF13481 AAA_25: AAA domain; P 64.4 32 0.00069 36.4 8.9 56 454-509 31-93 (193)
334 PTZ00112 origin recognition co 64.4 35 0.00075 44.8 10.3 44 438-481 760-807 (1164)
335 PRK06731 flhF flagellar biosyn 64.1 64 0.0014 36.8 11.7 125 456-617 76-211 (270)
336 PRK10917 ATP-dependent DNA hel 63.8 39 0.00084 43.8 11.1 94 1053-1148 291-389 (681)
337 PRK14954 DNA polymerase III su 63.8 16 0.00035 46.5 7.4 43 440-482 20-65 (620)
338 PRK07246 bifunctional ATP-depe 63.7 47 0.001 43.9 11.9 68 436-507 245-314 (820)
339 PRK09183 transposase/IS protei 63.1 48 0.001 37.5 10.4 37 441-481 92-128 (259)
340 PF06564 YhjQ: YhjQ protein; 62.6 11 0.00025 42.1 5.1 26 464-492 11-36 (243)
341 cd02037 MRP-like MRP (Multiple 62.6 81 0.0018 32.8 11.5 52 563-618 66-117 (169)
342 TIGR00678 holB DNA polymerase 61.8 31 0.00068 36.6 8.3 25 458-482 17-41 (188)
343 PRK07133 DNA polymerase III su 61.7 22 0.00047 45.9 8.0 42 441-482 23-67 (725)
344 KOG2543 Origin recognition com 61.0 1.7E+02 0.0037 35.0 14.2 225 436-701 9-259 (438)
345 COG1066 Sms Predicted ATP-depe 60.8 42 0.00091 40.2 9.5 88 458-579 96-183 (456)
346 PRK04195 replication factor C 60.7 69 0.0015 39.6 12.1 25 455-479 39-63 (482)
347 PRK14086 dnaA chromosomal repl 60.4 52 0.0011 41.8 10.8 45 458-503 317-361 (617)
348 PRK08533 flagellar accessory p 60.2 86 0.0019 34.8 11.6 50 454-506 23-72 (230)
349 PRK08760 replicative DNA helic 60.2 62 0.0014 40.0 11.5 55 453-509 227-281 (476)
350 PF00265 TK: Thymidine kinase; 60.1 17 0.00037 38.7 5.8 34 459-495 5-38 (176)
351 TIGR03117 cas_csf4 CRISPR-asso 59.8 67 0.0015 41.1 11.8 96 1057-1155 454-563 (636)
352 TIGR02688 conserved hypothetic 59.8 34 0.00075 41.4 8.7 39 440-478 194-232 (449)
353 COG1643 HrpA HrpA-like helicas 59.7 48 0.001 43.7 10.7 122 1060-1186 246-390 (845)
354 KOG0327 Translation initiation 59.7 10 0.00022 44.5 4.2 140 454-602 62-210 (397)
355 PF06745 KaiC: KaiC; InterPro 59.6 37 0.0008 37.2 8.6 51 457-509 21-71 (226)
356 PRK06647 DNA polymerase III su 59.5 24 0.00052 44.5 7.8 25 458-482 41-65 (563)
357 KOG1133 Helicase of the DEAD s 59.4 5.6 0.00012 49.8 2.2 92 1060-1153 616-720 (821)
358 PRK06067 flagellar accessory p 59.1 1.2E+02 0.0025 33.5 12.5 49 457-508 27-75 (234)
359 smart00491 HELICc2 helicase su 58.9 56 0.0012 33.5 9.1 55 1098-1153 21-80 (142)
360 PRK13849 putative crown gall t 58.8 56 0.0012 36.3 9.8 37 464-503 11-49 (231)
361 KOG0924 mRNA splicing factor A 58.7 16 0.00034 45.8 5.7 30 448-477 364-393 (1042)
362 PF13892 DBINO: DNA-binding do 58.6 1.2E+02 0.0027 31.0 11.1 60 228-287 49-108 (139)
363 TIGR00708 cobA cob(I)alamin ad 58.1 48 0.001 35.3 8.6 54 557-610 90-147 (173)
364 PRK10865 protein disaggregatio 58.0 37 0.00079 45.2 9.5 36 445-480 187-224 (857)
365 PF03354 Terminase_1: Phage Te 57.9 88 0.0019 38.7 12.3 147 439-602 1-162 (477)
366 KOG1144 Translation initiation 57.7 25 0.00054 44.6 7.2 44 563-612 564-607 (1064)
367 TIGR03346 chaperone_ClpB ATP-d 57.3 34 0.00075 45.4 9.1 38 444-481 181-220 (852)
368 PRK00771 signal recognition pa 57.3 1.1E+02 0.0024 37.5 12.7 35 457-494 97-131 (437)
369 KOG0991 Replication factor C, 56.5 11 0.00024 41.5 3.6 25 456-480 49-73 (333)
370 CHL00095 clpC Clp protease ATP 56.5 45 0.00098 44.2 10.0 26 455-480 200-225 (821)
371 PTZ00266 NIMA-related protein 55.8 52 0.0011 44.2 10.2 9 75-83 224-232 (1021)
372 PRK08840 replicative DNA helic 55.6 96 0.0021 38.3 12.0 57 448-506 210-266 (464)
373 PRK12377 putative replication 55.6 93 0.002 35.1 11.0 27 456-482 102-128 (248)
374 TIGR00416 sms DNA repair prote 55.2 42 0.0009 41.3 8.8 48 458-508 97-144 (454)
375 TIGR02639 ClpA ATP-dependent C 55.2 56 0.0012 42.7 10.5 27 455-481 203-229 (731)
376 PRK13826 Dtr system oriT relax 55.1 72 0.0016 43.3 11.4 58 435-498 380-437 (1102)
377 PRK13709 conjugal transfer nic 54.9 68 0.0015 45.7 11.5 64 433-498 964-1028(1747)
378 PHA03368 DNA packaging termina 54.5 31 0.00067 43.8 7.4 104 458-578 257-366 (738)
379 PF01443 Viral_helicase1: Vira 54.4 22 0.00048 38.8 5.7 41 564-607 62-102 (234)
380 PRK06305 DNA polymerase III su 54.0 47 0.001 40.7 9.0 42 441-482 22-66 (451)
381 KOG0739 AAA+-type ATPase [Post 54.0 4.1E+02 0.0089 30.9 17.4 62 427-509 153-214 (439)
382 PRK14722 flhF flagellar biosyn 53.8 82 0.0018 37.7 10.6 41 454-495 136-176 (374)
383 PRK10416 signal recognition pa 53.7 1.2E+02 0.0027 35.4 12.0 33 459-494 118-150 (318)
384 PRK07004 replicative DNA helic 53.5 91 0.002 38.4 11.3 50 454-505 212-261 (460)
385 PRK13341 recombination factor 53.4 52 0.0011 42.8 9.6 22 457-478 54-75 (725)
386 PRK12727 flagellar biosynthesi 53.3 1.4E+02 0.0031 37.4 12.7 38 455-493 350-387 (559)
387 KOG0950 DNA polymerase theta/e 53.2 33 0.00072 44.8 7.5 72 1107-1183 533-610 (1008)
388 PRK05748 replicative DNA helic 52.6 89 0.0019 38.3 11.1 60 444-505 192-251 (448)
389 PRK14970 DNA polymerase III su 52.4 83 0.0018 37.3 10.5 41 441-481 22-65 (367)
390 PRK00080 ruvB Holliday junctio 52.0 1.4E+02 0.003 34.8 12.2 43 437-479 29-75 (328)
391 KOG1265 Phospholipase C [Lipid 51.9 3.5E+02 0.0076 35.6 15.6 43 194-236 1035-1077(1189)
392 TIGR01242 26Sp45 26S proteasom 51.9 42 0.00092 39.8 8.0 38 455-498 156-193 (364)
393 PF01695 IstB_IS21: IstB-like 51.7 18 0.00039 38.5 4.3 48 453-507 45-92 (178)
394 PF07529 HSA: HSA; InterPro: 51.5 63 0.0014 28.8 7.2 62 197-259 9-71 (73)
395 COG0470 HolB ATPase involved i 51.2 48 0.001 38.1 8.1 26 458-483 27-52 (325)
396 PRK06964 DNA polymerase III su 51.2 46 0.00099 39.4 7.9 47 437-483 2-49 (342)
397 PHA02518 ParA-like protein; Pr 50.9 86 0.0019 33.5 9.6 39 462-503 8-48 (211)
398 TIGR00643 recG ATP-dependent D 50.7 73 0.0016 40.9 10.3 93 1053-1148 265-363 (630)
399 cd01122 GP4d_helicase GP4d_hel 50.6 1.1E+02 0.0023 34.5 10.7 50 454-505 29-78 (271)
400 PRK08006 replicative DNA helic 50.4 72 0.0016 39.4 9.7 57 448-506 217-273 (471)
401 TIGR00665 DnaB replicative DNA 50.1 1.3E+02 0.0027 36.7 11.8 50 454-505 194-243 (434)
402 TIGR02640 gas_vesic_GvpN gas v 49.9 38 0.00082 38.3 6.8 49 439-493 5-53 (262)
403 PF07015 VirC1: VirC1 protein; 49.8 2.2E+02 0.0049 31.7 12.4 40 465-507 12-53 (231)
404 PF12622 NpwBP: mRNA biogenesi 49.4 8.3 0.00018 32.1 1.0 11 1146-1156 4-14 (48)
405 PHA03372 DNA packaging termina 49.1 47 0.001 41.8 7.6 126 453-601 201-336 (668)
406 PRK12724 flagellar biosynthesi 48.9 1.3E+02 0.0027 36.7 11.1 58 560-618 295-360 (432)
407 COG3973 Superfamily I DNA and 48.3 37 0.0008 42.4 6.5 68 432-504 208-278 (747)
408 TIGR00365 monothiol glutaredox 48.2 1E+02 0.0022 29.3 8.5 57 1072-1128 11-73 (97)
409 PTZ00454 26S protease regulato 48.2 31 0.00067 41.6 6.0 42 454-501 178-219 (398)
410 PRK11034 clpA ATP-dependent Cl 48.0 44 0.00096 43.7 7.8 27 454-480 206-232 (758)
411 PRK07399 DNA polymerase III su 48.0 72 0.0016 37.3 8.8 43 441-483 9-54 (314)
412 cd01125 repA Hexameric Replica 47.7 90 0.002 34.6 9.3 51 457-507 3-65 (239)
413 COG0593 DnaA ATPase involved i 47.4 91 0.002 37.7 9.6 52 564-615 175-234 (408)
414 CHL00206 ycf2 Ycf2; Provisiona 47.3 57 0.0012 46.3 8.7 41 456-502 1631-1671(2281)
415 COG2812 DnaX DNA polymerase II 46.8 31 0.00067 42.8 5.8 43 441-483 21-66 (515)
416 TIGR01243 CDC48 AAA family ATP 46.8 56 0.0012 42.7 8.6 37 455-497 212-248 (733)
417 PRK04132 replication factor C 46.6 53 0.0011 43.3 8.1 48 564-611 630-678 (846)
418 smart00573 HSA domain in helic 46.5 1.1E+02 0.0023 27.7 7.8 62 198-260 10-72 (73)
419 PRK11054 helD DNA helicase IV; 46.4 42 0.00092 43.4 7.2 66 436-507 196-263 (684)
420 CHL00176 ftsH cell division pr 46.2 85 0.0019 40.3 9.7 23 456-478 217-239 (638)
421 TIGR03600 phage_DnaB phage rep 46.0 1.1E+02 0.0023 37.2 10.3 59 445-505 184-242 (421)
422 PRK06646 DNA polymerase III su 45.8 39 0.00084 35.3 5.5 43 1052-1094 9-51 (154)
423 PF07946 DUF1682: Protein of u 45.5 52 0.0011 38.5 7.2 9 296-304 313-321 (321)
424 cd03115 SRP The signal recogni 45.3 1.4E+02 0.0031 31.0 10.0 24 459-482 4-27 (173)
425 TIGR01243 CDC48 AAA family ATP 45.2 51 0.0011 43.1 7.8 44 455-504 487-530 (733)
426 PRK08699 DNA polymerase III su 45.1 1.2E+02 0.0026 35.6 10.1 47 437-483 2-49 (325)
427 PRK05973 replicative DNA helic 45.0 50 0.0011 37.0 6.6 56 448-506 57-112 (237)
428 PRK09165 replicative DNA helic 44.9 1.6E+02 0.0035 36.7 11.7 55 453-507 215-281 (497)
429 cd00984 DnaB_C DnaB helicase C 44.6 70 0.0015 35.2 7.8 126 1053-1178 22-240 (242)
430 COG3972 Superfamily I DNA and 44.5 84 0.0018 38.5 8.5 45 464-509 185-230 (660)
431 COG0541 Ffh Signal recognition 44.0 59 0.0013 39.3 7.2 85 465-576 110-194 (451)
432 PRK07276 DNA polymerase III su 43.5 1.1E+02 0.0024 35.3 9.3 47 436-483 2-50 (290)
433 PRK10919 ATP-dependent DNA hel 43.5 34 0.00074 44.2 5.7 53 436-494 2-55 (672)
434 PRK05595 replicative DNA helic 43.4 76 0.0016 38.9 8.5 53 453-507 199-251 (444)
435 KOG0952 DNA/RNA helicase MER3/ 43.3 18 0.00039 47.5 3.1 111 454-579 942-1061(1230)
436 TIGR03689 pup_AAA proteasome A 43.3 55 0.0012 40.8 7.2 26 455-480 216-241 (512)
437 cd00561 CobA_CobO_BtuR ATP:cor 42.7 1.5E+02 0.0032 31.2 9.2 55 557-611 88-146 (159)
438 PRK14971 DNA polymerase III su 42.6 1.3E+02 0.0028 38.6 10.5 25 458-482 42-66 (614)
439 COG4646 DNA methylase [Transcr 42.5 15 0.00033 43.9 2.1 43 591-633 472-516 (637)
440 KOG0780 Signal recognition par 41.7 60 0.0013 38.6 6.7 98 459-583 105-202 (483)
441 PRK03992 proteasome-activating 41.4 81 0.0018 37.9 8.2 42 455-502 165-206 (389)
442 cd03028 GRX_PICOT_like Glutare 41.4 1.1E+02 0.0024 28.5 7.4 45 1072-1116 7-57 (90)
443 PRK05728 DNA polymerase III su 41.3 48 0.001 34.0 5.4 43 1053-1095 10-52 (142)
444 KOG0737 AAA+-type ATPase [Post 41.1 57 0.0012 38.6 6.4 50 454-509 126-175 (386)
445 PF00308 Bac_DnaA: Bacterial d 40.5 2.6E+02 0.0057 30.7 11.4 26 458-483 37-62 (219)
446 KOG0924 mRNA splicing factor A 40.4 28 0.0006 43.8 3.9 77 1116-1192 614-706 (1042)
447 PRK10867 signal recognition pa 40.4 1.4E+02 0.003 36.5 9.9 116 459-601 104-224 (433)
448 PRK08506 replicative DNA helic 40.1 2.6E+02 0.0057 34.6 12.5 51 453-506 190-240 (472)
449 PRK14712 conjugal transfer nic 40.1 1.8E+02 0.0039 41.2 11.9 64 433-498 832-896 (1623)
450 TIGR00064 ftsY signal recognit 39.7 2.4E+02 0.0051 32.3 11.2 129 459-620 76-220 (272)
451 KOG2357 Uncharacterized conser 39.6 1.1E+02 0.0023 36.6 8.3 34 253-286 373-406 (440)
452 TIGR02655 circ_KaiC circadian 39.3 1.3E+02 0.0029 37.2 9.8 65 441-508 248-313 (484)
453 TIGR01547 phage_term_2 phage t 39.1 76 0.0016 38.0 7.5 45 558-604 94-142 (396)
454 KOG1029 Endocytic adaptor prot 38.8 3.5E+02 0.0077 34.9 12.7 13 564-576 714-726 (1118)
455 TIGR00959 ffh signal recogniti 38.4 1.8E+02 0.0039 35.5 10.4 34 458-493 102-135 (428)
456 PRK05564 DNA polymerase III su 38.3 93 0.002 36.0 7.8 24 459-482 30-53 (313)
457 PLN03086 PRLI-interacting fact 38.0 94 0.002 39.1 8.0 32 288-319 36-67 (567)
458 cd01128 rho_factor Transcripti 37.7 73 0.0016 35.9 6.6 23 454-476 15-37 (249)
459 PHA00012 I assembly protein 37.7 66 0.0014 37.7 6.1 33 460-497 6-38 (361)
460 KOG1133 Helicase of the DEAD s 37.6 54 0.0012 41.6 5.8 45 435-479 14-58 (821)
461 PF03796 DnaB_C: DnaB-like hel 37.4 1.2E+02 0.0027 33.9 8.4 45 454-500 18-62 (259)
462 PRK09302 circadian clock prote 36.8 1.1E+02 0.0024 38.1 8.7 49 458-509 276-324 (509)
463 KOG0923 mRNA splicing factor A 36.1 1E+03 0.022 30.8 15.9 349 211-601 30-419 (902)
464 PRK09302 circadian clock prote 35.5 2E+02 0.0043 35.9 10.6 63 444-508 19-82 (509)
465 PF03237 Terminase_6: Terminas 35.2 2.8E+02 0.006 32.0 11.3 33 545-578 79-111 (384)
466 COG1198 PriA Primosomal protei 35.2 1.1E+02 0.0023 39.9 8.1 80 1052-1133 225-305 (730)
467 COG1435 Tdk Thymidine kinase [ 34.6 1.3E+02 0.0029 32.6 7.5 35 459-496 8-42 (201)
468 TIGR00150 HI0065_YjeE ATPase, 33.8 66 0.0014 32.7 4.9 34 447-480 14-47 (133)
469 KOG0920 ATP-dependent RNA heli 33.6 95 0.0021 41.2 7.4 124 1056-1185 395-546 (924)
470 PRK10818 cell division inhibit 33.5 1.6E+02 0.0035 33.0 8.7 52 560-617 109-160 (270)
471 TIGR03499 FlhF flagellar biosy 33.4 1.6E+02 0.0034 33.8 8.5 36 457-493 196-231 (282)
472 PRK11773 uvrD DNA-dependent he 33.4 63 0.0014 42.2 5.9 53 436-494 9-62 (721)
473 smart00492 HELICc3 helicase su 32.8 2.2E+02 0.0047 29.2 8.5 53 1098-1152 24-78 (141)
474 PTZ00361 26 proteosome regulat 32.6 2.9E+02 0.0063 33.9 11.0 45 454-504 216-260 (438)
475 COG0552 FtsY Signal recognitio 32.5 2.4E+02 0.0053 33.2 9.6 122 459-608 143-275 (340)
476 PRK08939 primosomal protein Dn 32.4 1.1E+02 0.0024 35.6 7.1 39 444-482 143-183 (306)
477 KOG3272 Predicted coiled-coil 32.4 43 0.00093 35.7 3.3 47 257-303 133-179 (207)
478 PHA00350 putative assembly pro 32.4 91 0.002 37.6 6.5 15 566-580 83-97 (399)
479 PF05970 PIF1: PIF1-like helic 31.7 90 0.0019 37.2 6.4 61 436-499 1-63 (364)
480 PRK09376 rho transcription ter 31.5 1.4E+02 0.0029 36.2 7.6 28 454-481 168-195 (416)
481 PRK14873 primosome assembly pr 31.5 2.2E+02 0.0048 36.9 10.1 79 1054-1134 170-250 (665)
482 TIGR01075 uvrD DNA helicase II 31.5 63 0.0014 42.1 5.5 53 436-494 4-57 (715)
483 TIGR00376 DNA helicase, putati 31.4 86 0.0019 40.3 6.5 54 1054-1107 183-236 (637)
484 cd01121 Sms Sms (bacterial rad 31.3 2.7E+02 0.0059 33.3 10.3 129 1053-1184 91-265 (372)
485 TIGR00580 mfd transcription-re 31.2 2.4E+02 0.0053 37.9 10.7 95 1053-1148 481-579 (926)
486 PF12846 AAA_10: AAA-like doma 31.0 90 0.002 35.1 6.1 61 1056-1119 237-300 (304)
487 PF00437 T2SE: Type II/IV secr 30.8 82 0.0018 35.5 5.7 37 446-482 118-154 (270)
488 PRK13556 azoreductase; Provisi 30.6 32 0.0007 37.4 2.2 31 1140-1170 87-120 (208)
489 COG1474 CDC6 Cdc6-related prot 30.6 1E+03 0.022 28.5 15.2 49 436-484 20-71 (366)
490 TIGR03881 KaiC_arch_4 KaiC dom 30.4 1.3E+02 0.0028 32.9 7.0 51 454-507 19-69 (229)
491 PRK13833 conjugal transfer pro 30.4 1.1E+02 0.0024 35.9 6.6 43 435-480 127-169 (323)
492 TIGR02760 TraI_TIGR conjugativ 30.4 2.7E+02 0.0059 40.7 11.7 61 435-497 1018-1079(1960)
493 KOG0332 ATP-dependent RNA heli 30.4 1.3E+02 0.0028 35.7 6.9 59 543-601 208-273 (477)
494 PF06409 NPIP: Nuclear pore co 30.3 4.8E+02 0.01 29.0 10.7 23 196-218 84-106 (265)
495 PRK12726 flagellar biosynthesi 29.9 1E+03 0.022 29.0 14.4 133 454-623 205-345 (407)
496 PRK05636 replicative DNA helic 29.8 2.7E+02 0.0058 34.9 10.2 50 454-505 264-313 (505)
497 PF06068 TIP49: TIP49 C-termin 29.4 1.1E+02 0.0023 36.6 6.2 59 431-495 24-86 (398)
498 COG1419 FlhF Flagellar GTP-bin 29.3 7.6E+02 0.016 30.0 13.2 135 455-620 203-341 (407)
499 KOG1807 Helicases [Replication 29.1 66 0.0014 41.3 4.6 68 436-507 378-449 (1025)
500 KOG0163 Myosin class VI heavy 28.8 1.2E+03 0.027 30.2 15.1 34 253-286 923-956 (1259)
No 1
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=6.2e-243 Score=2047.95 Aligned_cols=1013 Identities=53% Similarity=0.831 Sum_probs=904.2
Q ss_pred CccccchhccCCCCCCCCcCCCCCCccccccCceeecCCCeeeecCcchhcccccCCCCCCccceeeeeeeecccchhhH
Q 000994 1 METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSL 80 (1196)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1196)
+.+..|+.+|..++.+|.|||+|.+|++.|||.|+|||||+.|+|||.|+||..|||||+||+|+|+||+++||+|+++|
T Consensus 150 ~dns~e~~~D~dsh~r~~~~d~d~~~k~a~e~~~~~i~d~~i~~ie~ry~kl~aSl~l~s~s~i~~ke~n~~~T~~~r~L 229 (1185)
T KOG0388|consen 150 MDNSPEFAADVDSHRRGSYHDRDITPKIAYEPSYLDIGDGVIYKIEPRYDKLVASLNLPSFSDIHVKEFNLKGTLDLRSL 229 (1185)
T ss_pred cCCCccccccCChhhhcchhhhccchhhhccccccCcCCCccccCcchhhhhhhhcCCCchhHHHHHHHhhcccccHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCccCCCcccCCCCCCcchhHHHHHHHHHhccCCCCcceeeeeccCC-CCCCCCCcccchhhhhcccCCeeEEEE
Q 000994 81 AAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTG-NSSIPEGAAGSIQRSILSEGGILQVYY 159 (1196)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1196)
+.||++||+-|.|+|.|||||+|||++++++||++++.+++..|++.++||+ +|.+|++.+|...+.++++||..+|++
T Consensus 230 ~~~~~s~K~s~v~~r~~~n~p~~~y~~~~sklk~l~~~~~~~~~k~~indAa~~s~~~k~~~g~~a~~l~n~~~~~e~h~ 309 (1185)
T KOG0388|consen 230 AELMASDKRSGVRSRNGMNEPRPQYEMTGSKLKDLLKVYERRGEKLNINDAANGSRHIKKCVGDVANDLLNEGGYPEVHH 309 (1185)
T ss_pred HHHHhhcchhhhhhccCCCCCCcchhhhhhHHHHhhhhcccchhhhhhhhhhccchhhhcccccchhhhhccCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred EEEecCCcchhhhhccccccccccCCchhhhHHHHHHHHHHHHHHHhhhchhhHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 000994 160 VKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVK 239 (1196)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1196)
+|.+++||.++|+.+.+|+|...+.+|..+++-+ .++.++|.+||||||+||||+++++++++.+|+||+|++|+||+|
T Consensus 310 ~r~l~kgd~~e~t~~~~~~k~nak~d~av~~k~e-~~~~~~w~~iaRkdi~k~~riiqq~q~~rstnakk~s~lC~REar 388 (1185)
T KOG0388|consen 310 LRKLAKGDISEITNEMLSQKGNAKTDPAVISKTE-RKITAEWISIARKDIRKVHRIIQQYQSARSTNAKKTSILCAREAR 388 (1185)
T ss_pred HHHhccccHHHHHHhhcccccccccchhhhhhHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999998887644 489999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 000994 240 MKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFM 319 (1196)
Q Consensus 240 ~~~~~~~~~~k~~~~~~~r~~re~~~~wk~~e~~~~~~~~~~eke~~~~~k~~~e~~e~~rq~rkl~fli~qtely~hf~ 319 (1196)
+|+.|+.|..|+.|+||||++|||+.|||||||+|||+|||+||||+|++|+|+|+||.+||+|||||||||||||||||
T Consensus 389 r~~~rs~K~~rt~~~rakr~~Rem~~fwKk~er~~rd~rKK~EkEamer~KrEeEerEskRQarklnfLltQTELySHFi 468 (1185)
T KOG0388|consen 389 RWQSRSYKTSRTNPIRAKRIYREMYGFWKKNERNMRDLRKKAEKEAMERAKREEEERESKRQARKLNFLLTQTELYSHFI 468 (1185)
T ss_pred HhhhccccCcccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCCchhhcccCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhccchhhhHHHhhhhhHH
Q 000994 320 QNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTE 399 (1196)
Q Consensus 320 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~a~~a~~~~~~~~~~fd~~~~~~~~~~~~~ 399 (1196)
|+|+...+++++|.+.. +.+..+++.-+++|++.+++.++++||+|++ ++..+.+||.+-...++..+.+
T Consensus 469 ~rK~d~n~se~lp~~~n---------e~sa~e~n~~~d~eea~l~~~~lraAq~Av~-a~~~t~afd~e~~~~~ntse~e 538 (1185)
T KOG0388|consen 469 GRKNDCNLSEALPAERN---------EISAGEPNGMKDYEEAMLQKLRLRAAQDAVS-AKQITDAFDTEFGAERNTSEFE 538 (1185)
T ss_pred hhcccCCccccCCcccc---------cccccCcccCCChHHHHHHHHHHHHHHHHHh-HHHhhhhhhhhhhhcccccccc
Confidence 99999999998887543 1233455566888999999999999999998 8999999998876655443322
Q ss_pred HhhhhhcccCCCCcccCCCCCCCCCCcccCCchhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHH
Q 000994 400 AAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL 479 (1196)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~P~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l 479 (1196)
...+++++++|+.+....+|+||+.|.|+|++||++||+||+++|++|.+||||||||||||+|+|+++++|
T Consensus 539 --------~~e~e~n~q~~t~i~~t~tV~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhL 610 (1185)
T KOG0388|consen 539 --------GPENEGNFQGPTNIDTTRTVPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHL 610 (1185)
T ss_pred --------CccccccccCCccccceeeccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHH
Confidence 235678899999888788999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh
Q 000994 480 AEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY 559 (1196)
Q Consensus 480 ~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~ 559 (1196)
++.+++|||||||+|+|+|+||.+||.+|+|++++++|||+..+|+.++++|+++.+|++..+|||+||||++++.|.++
T Consensus 611 aE~~nIwGPFLVVtpaStL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky 690 (1185)
T KOG0388|consen 611 AETHNIWGPFLVVTPASTLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKY 690 (1185)
T ss_pred HHhccCCCceEEeehHHHHhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccc
Q 000994 560 FRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESH 639 (1196)
Q Consensus 560 l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~ 639 (1196)
|++++|+||||||||.||++.|.+|+.|++|+|++|||||||||||+++|||+|||||||.+|+++++|.+||++.|+++
T Consensus 691 ~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEsh 770 (1185)
T KOG0388|consen 691 LQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESH 770 (1185)
T ss_pred HHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhH
Q 000994 640 AEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKI 719 (1196)
Q Consensus 640 a~~~~~~~~~ql~rL~~ILkpfmLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~ 719 (1196)
++.+++++++||.|||+|||||||||+|++|.+||+.|+|++|+|+||.+|+.+|+.++++|+..+
T Consensus 771 Ae~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E-------------- 836 (1185)
T KOG0388|consen 771 AEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSME-------------- 836 (1185)
T ss_pred HHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHH--------------
Confidence 999999999999999999999999999999999999999999999999999999999999987433
Q ss_pred HHHHHHHHHHHHhhCCchhhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhc
Q 000994 720 LNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSA 799 (1196)
Q Consensus 720 ~~lmnlvmqLRKvCnHP~Lfer~~~~s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~ 799 (1196)
+.++|||||||||||+||+|.+.+|.++++... .+.+| +|+.+|||.|.+|+|++.+.+.
T Consensus 837 --~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~---------nl~dv-~S~Grnpi~ykiP~L~~~d~le-------- 896 (1185)
T KOG0388|consen 837 --MENLVMQLRKVCNHPDLFERLEPRSGLSLEVSD---------NLGDV-VSFGRNPIDYKIPSLVAKDALE-------- 896 (1185)
T ss_pred --HHHHHHHHHHhcCChHHHhhcCCcceeEEEccc---------CHHHH-HhCCCCceeecchHHHHHHHHH--------
Confidence 336999999999999999999999998886543 35666 8889999999999999999873
Q ss_pred ccCCchhHHHHhHhhccchhhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhh
Q 000994 800 VGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFL 879 (1196)
Q Consensus 800 ~~~g~~~~~l~~~~ni~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~ 879 (1196)
..+|||| +.++.-..-. ....+.+.+.|- ..+
T Consensus 897 ----------~~~fniy--e~i~~~~g~~-----~~v~Geg~~~w~--~~l----------------------------- 928 (1185)
T KOG0388|consen 897 ----------MFRFNIY--EMIERINGLR-----RIVNGEGPNAWY--LRL----------------------------- 928 (1185)
T ss_pred ----------HHHHhHH--HHHHHHhhhH-----hhhcCCCcchhc--ccc-----------------------------
Confidence 3467777 3333211100 001112222221 000
Q ss_pred chhhhHHhhhhccccccCCCCCcchhhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccc
Q 000994 880 DGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTF 959 (1196)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 959 (1196)
.++...++......+... +++++.++.|.....+..+..+ .++ ..++.+..++|
T Consensus 929 ------~~e~k~G~~~~~n~e~~~-Kavtr~ll~p~~~~~e~~~rvi--------------~~e-----~~~L~~~~y~y 982 (1185)
T KOG0388|consen 929 ------SLEFKYGGYVFRNVEEAG-KAVTRNLLNPESSLLESMRRVI--------------DEE-----AYRLQRHVYCY 982 (1185)
T ss_pred ------eeeeccCCcccccHHHHH-HHHHHHhcCcccchhHHHHHHh--------------hHH-----HHHhhhheeee
Confidence 011122222222222222 6788888888766555443321 122 25677889999
Q ss_pred cCCCCCCCcccccCCcchhcccccccCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCC
Q 000994 960 IPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGS 1039 (1196)
Q Consensus 960 ~p~~~a~~i~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s 1039 (1196)
.|.+.+||+-+.. +.+.| +.+...+.+++...++
T Consensus 983 ~P~v~apPvLI~~-----------------------------ead~P---------------eId~E~~~~pLn~~i~-- 1016 (1185)
T KOG0388|consen 983 SPVVAAPPVLISN-----------------------------EADLP---------------EIDLENRHIPLNTTIY-- 1016 (1185)
T ss_pred ccccCCCCeeeec-----------------------------ccCCC---------------CCCccccCccccccee--
Confidence 9999999984421 11111 1122223333333333
Q ss_pred CCCCCCCCcccccccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHc
Q 000994 1040 CPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQ 1119 (1196)
Q Consensus 1040 ~~~~~~~d~~~li~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq 1119 (1196)
+|||++| +++||||.+||+||.+|+++|||||+|+|||+|||+||+||.++||+|+|||||++.++|+++|.|||
T Consensus 1017 ~Ppm~~F-----itdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ 1091 (1185)
T KOG0388|consen 1017 VPPMNTF-----ITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQ 1091 (1185)
T ss_pred cCcHHhh-----hccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhcc
Confidence 8888877 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhcc
Q 000994 1120 HRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNG 1192 (1196)
Q Consensus 1120 ~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~ 1192 (1196)
+ ++||||||||||||+||||||||||||||+||||+.|+||||||||+||||+|||||||++|||||+|+++
T Consensus 1092 ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~r 1163 (1185)
T KOG0388|consen 1092 A-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLER 1163 (1185)
T ss_pred C-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999965
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.2e-125 Score=1098.34 Aligned_cols=448 Identities=48% Similarity=0.838 Sum_probs=406.4
Q ss_pred CCchhh-ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHH
Q 000994 429 TPELFK-GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1196)
Q Consensus 429 ~P~~l~-~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k 507 (1196)
+|..+. +.|||||++||+||+.+|++|.|||||||||||||+|+||++.+++...++.||+||+||.|++.||.+||.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 788887 8999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHH
Q 000994 508 FCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTL 587 (1196)
Q Consensus 508 ~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal 587 (1196)
|+|++++++|+|++.+|..+++.+... +.|+|+||||+++.++...|+.+.|.|+||||||+|||.+|.+++.+
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r~~~~~------~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~l 312 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRRDIMLP------GRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKIL 312 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHHHhhcc------CCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHH
Confidence 999999999999999999887765322 48999999999999999999999999999999999999999999999
Q ss_pred HhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHHHhhh
Q 000994 588 LSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVK 667 (1196)
Q Consensus 588 ~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~ql~rL~~ILkpfmLRR~K 667 (1196)
+.|++.+||||||||+|||+.|||+||+||.|++|++.+.|..||...+..+ +.+.+.+||.+|+||+|||+|
T Consensus 313 r~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~-------~~e~v~~Lh~vL~pFlLRR~K 385 (971)
T KOG0385|consen 313 REFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEG-------DQELVSRLHKVLRPFLLRRIK 385 (971)
T ss_pred HHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccccc-------CHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998653222 344789999999999999999
Q ss_pred hhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHHHHhhCCchhhccccCCcc
Q 000994 668 KDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSY 747 (1196)
Q Consensus 668 kdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnHP~Lfer~~~~s~ 747 (1196)
.+|+..||||.|..+||.||..|++.|.++..+- +.. +.+. ....-..|+|+||||||+||||+||...+...|
T Consensus 386 ~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kd-l~~-~n~~----~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~p 459 (971)
T KOG0385|consen 386 SDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKD-LDA-LNGE----GKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPP 459 (971)
T ss_pred HhHhhcCCCcceeeEeccchHHHHHHHHHHHHhc-chh-hccc----ccchhhHHHHHHHHHHHhcCCccccCCCCCCCC
Confidence 9999999999999999999999999999987652 111 1111 111346799999999999999999864321000
Q ss_pred cccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHHhHhhccchhhhhhhhhh
Q 000994 748 LYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFS 827 (1196)
Q Consensus 748 ~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~~~~~~~~ 827 (1196)
|
T Consensus 460 y------------------------------------------------------------------------------- 460 (971)
T KOG0385|consen 460 Y------------------------------------------------------------------------------- 460 (971)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhhhccccccCCCCCcchhhh
Q 000994 828 LASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAV 907 (1196)
Q Consensus 828 ~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1196)
T Consensus 461 -------------------------------------------------------------------------------- 460 (971)
T KOG0385|consen 461 -------------------------------------------------------------------------------- 460 (971)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccccCCcchhcccccccCC
Q 000994 908 TRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHD 987 (1196)
Q Consensus 908 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~~~~ 987 (1196)
.
T Consensus 461 -------------------------t------------------------------------------------------ 461 (971)
T KOG0385|consen 461 -------------------------T------------------------------------------------------ 461 (971)
T ss_pred -------------------------C------------------------------------------------------
Confidence 0
Q ss_pred hhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCcccccccccHHHHHHHHHHH
Q 000994 988 PWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKR 1067 (1196)
Q Consensus 988 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~Ld~LL~~ 1067 (1196)
.-+.+++.||||.+||+||.+
T Consensus 462 -----------------------------------------------------------tdehLv~nSGKm~vLDkLL~~ 482 (971)
T KOG0385|consen 462 -----------------------------------------------------------TDEHLVTNSGKMLVLDKLLPK 482 (971)
T ss_pred -----------------------------------------------------------cchHHHhcCcceehHHHHHHH
Confidence 001346779999999999999
Q ss_pred HhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccC-CCceEEEEecCccccccCcccCCEE
Q 000994 1068 LRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHR-SDIFVFLLSTRAGGLGINLTAADTV 1146 (1196)
Q Consensus 1068 Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~-~di~VfLLSTrAGGlGINLTaAdtV 1146 (1196)
|+++|||||||||||+|||||++|+.+|+|.|||||||++.++|.+.|+.|+.. +.+|||||||||||+|||||+||||
T Consensus 483 Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtV 562 (971)
T KOG0385|consen 483 LKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTV 562 (971)
T ss_pred HHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEE
Confidence 999999999999999999999999999999999999999999999999999984 4799999999999999999999999
Q ss_pred EEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhcc
Q 000994 1147 IFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNG 1192 (1196)
Q Consensus 1147 IfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~ 1192 (1196)
|||||||||.+|.|||||||||||+|+|.||||||.+||||+|+.+
T Consensus 563 IlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveR 608 (971)
T KOG0385|consen 563 ILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVER 608 (971)
T ss_pred EEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999864
No 3
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=3.1e-116 Score=1040.79 Aligned_cols=701 Identities=39% Similarity=0.622 Sum_probs=471.6
Q ss_pred CcccCCchhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 425 STVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 425 ~~v~~P~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
..++.|.+|.+.||+||..||.||+.+|+++.|||||||||||||+|+|+|++|+++..+.|||+|||||.+++.||.-|
T Consensus 604 VktpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEME 683 (1958)
T KOG0391|consen 604 VKTPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEME 683 (1958)
T ss_pred eccCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHH
Q 000994 505 ISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRW 584 (1196)
Q Consensus 505 i~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~ 584 (1196)
|++|||+++++.|+|+.++|+.-|+.|. +...|||+||||.++..|...|++.+|+|+||||||+|||..|.+|
T Consensus 684 lKRwcPglKILTYyGs~kErkeKRqgW~------kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrW 757 (1958)
T KOG0391|consen 684 LKRWCPGLKILTYYGSHKERKEKRQGWA------KPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRW 757 (1958)
T ss_pred HhhhCCcceEeeecCCHHHHHHHhhccc------CCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHH
Confidence 9999999999999999999999888875 4478999999999999999999999999999999999999999999
Q ss_pred HHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHHH
Q 000994 585 KTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLR 664 (1196)
Q Consensus 585 kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~ql~rL~~ILkpfmLR 664 (1196)
++|+.|++.+||||||||+||++.|||+|+|||||..|.+++.|+.||++|....-+.+...+..-+.|||.+|+||+||
T Consensus 758 QAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLR 837 (1958)
T KOG0391|consen 758 QALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILR 837 (1958)
T ss_pred HHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877777777788899999999999999
Q ss_pred hhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHHHHhhCCchhhccccC
Q 000994 665 RVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEG 744 (1196)
Q Consensus 665 R~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnHP~Lfer~~~ 744 (1196)
|+|+||++.||.|.|++|+|.||.|||.||+.+..+-.... .+..+.+.+++|++||||||||||.|||.+.+
T Consensus 838 RlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKe-------tLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv 910 (1958)
T KOG0391|consen 838 RLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKE-------TLKSGHFMSVLNILMQLRKVCNHPNLFEPRPV 910 (1958)
T ss_pred HHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhh-------HhhcCchhHHHHHHHHHHHHcCCCCcCCCCCC
Confidence 99999999999999999999999999999999877654333 23345678999999999999999999999999
Q ss_pred CcccccccCCCCCCCCC---CCCccccc---ccCCCCccccccchhhHHHhhhhhhhhhhcc------------------
Q 000994 745 SSYLYFGEIPNSLLPPP---FGELEDIS---FSGVRNPIEYKIPKIVHQEILQSSEILCSAV------------------ 800 (1196)
Q Consensus 745 ~s~~~f~~~~~~~~~~~---~~~~~~~~---~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~------------------ 800 (1196)
.++|....+.-+..... .+++-.-. -+-...+-...+|+..+.-...+...+.+..
T Consensus 911 ~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~ 990 (1958)
T KOG0391|consen 911 GSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAP 990 (1958)
T ss_pred CcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccc
Confidence 99885443322111100 00000000 0000011111222221111111110000000
Q ss_pred -----------------cCCch------------------hHHHHhHhhccchh---------hhhhhhhhccCC-----
Q 000994 801 -----------------GHGIS------------------RELFQKRFNIFSAE---------NVYQSIFSLASG----- 831 (1196)
Q Consensus 801 -----------------~~g~~------------------~~~l~~~~ni~~~~---------~~~~~~~~~~~~----- 831 (1196)
..+.. ...+....|.+... ....++..-.+.
T Consensus 991 F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl 1070 (1958)
T KOG0391|consen 991 FQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPL 1070 (1958)
T ss_pred cccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecccccccc
Confidence 00000 00000011100000 000000000000
Q ss_pred ---CCCCCC-Cccccc---cccccC---CChH-------HHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhhhcccc
Q 000994 832 ---SDASPV-KSETFG---FTHLMD---LSPA-------EVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGEL 894 (1196)
Q Consensus 832 ---s~~~~~-~~~~~~---~~~l~~---ls~~-------e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (1196)
...... -..+++ +.++.+ +++. .......+.....+...+...++..+...++.++--.
T Consensus 1071 ~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~---- 1146 (1958)
T KOG0391|consen 1071 LRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVN---- 1146 (1958)
T ss_pred ccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhcc----
Confidence 000000 000000 000000 0000 0000000000000000000001111111111111000
Q ss_pred ccCCCCCcchhhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccc-cC
Q 000994 895 NENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQ-CS 973 (1196)
Q Consensus 895 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~-c~ 973 (1196)
-+.-+ ..+.+...++. .....-.....+...+..+.++.....+...-..++|.+.+++.... |.
T Consensus 1147 ---APvyg--~e~l~~c~lp~---------e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ 1212 (1958)
T KOG0391|consen 1147 ---APVYG--RELLRICALPS---------EGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPR 1212 (1958)
T ss_pred ---Ccccc--hhhhhhhccch---------hhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCC
Confidence 00000 00000000000 00000000011122233333333333344444556666666554433 32
Q ss_pred CcchhcccccccCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccC-CCccchhhhhhhccCCCC-CCCCCCcccc
Q 000994 974 DRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSEL-PVAKPALQLTYQIFGSCP-PMQSFDPAKL 1051 (1196)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~s~~-~~~~~d~~~l 1051 (1196)
.... +. +.++.+-.+ +...+ +...+. + ..++ -++-++..-+
T Consensus 1213 ppp~-~~-------~r~r~~~~q----------------------lrsel~p~~~~~-q------~~~~r~lqFPelrLi 1255 (1958)
T KOG0391|consen 1213 PPPL-YS-------HRMRILRQQ----------------------LRSELAPYFQQR-Q------TTAPRLLQFPELRLI 1255 (1958)
T ss_pred CCcc-cc-------hHHHHHHHH----------------------HHHHhccccchh-h------ccchhhhcCcchhee
Confidence 2111 10 000000000 00000 000000 0 0000 1222344444
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
-.|+|||++|.-||.+|+.+|||||||+|||+|||+||.||+|+||-|+||||+++.++|+.++++||.|+.||||+|||
T Consensus 1256 qyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILST 1335 (1958)
T KOG0391|consen 1256 QYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILST 1335 (1958)
T ss_pred ecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1132 RAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
|+||+|||||.||||||||+||||++|.||.||+|||||||+|++||||+..||||+|++.-
T Consensus 1336 rSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1336 RSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred cCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999754
No 4
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=7.5e-108 Score=990.69 Aligned_cols=458 Identities=43% Similarity=0.743 Sum_probs=406.5
Q ss_pred cCCchhhc-cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHH
Q 000994 428 QTPELFKG-SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1196)
Q Consensus 428 ~~P~~l~~-~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~ 506 (1196)
.||..+++ +||+||++|||||+.+|.++.+||||||||||||+|+|+||.++...+.+.||||||+|.|++.+|+.||.
T Consensus 361 ~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~ 440 (1373)
T KOG0384|consen 361 KQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFE 440 (1373)
T ss_pred cCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHH
Confidence 46777765 99999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred HhCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHH
Q 000994 507 RFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKT 586 (1196)
Q Consensus 507 k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~ka 586 (1196)
.|+ ++++++|+|+...|..++.+-...........|+++||||+++.+|...|..++|.++++||||++||..|.++..
T Consensus 441 ~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~ 519 (1373)
T KOG0384|consen 441 TWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYES 519 (1373)
T ss_pred HHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHH
Confidence 999 9999999999999998887532221112234799999999999999999999999999999999999999999999
Q ss_pred HHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHHHhh
Q 000994 587 LLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRV 666 (1196)
Q Consensus 587 l~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~ql~rL~~ILkpfmLRR~ 666 (1196)
|..++..||+|+||||+||++.|||+|||||+|+-|.+.++|...|.. -++.++..||.+|+||||||+
T Consensus 520 l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-----------~~e~~~~~L~~~L~P~~lRr~ 588 (1373)
T KOG0384|consen 520 LNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-----------ETEEQVRKLQQILKPFLLRRL 588 (1373)
T ss_pred HHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-----------hhHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999988732 256789999999999999999
Q ss_pred hhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHHHHhhCCchhhccccCCc
Q 000994 667 KKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSS 746 (1196)
Q Consensus 667 KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnHP~Lfer~~~~s 746 (1196)
|+||+..||+|.|.++.|+||..|+.+|.+|..+ .+..|..+..|. ..+|+|+||.||||||||+||..++..
T Consensus 589 kkdvekslp~k~E~IlrVels~lQk~yYk~ILtk-N~~~LtKG~~g~-----~~~lLNimmELkKccNHpyLi~gaee~- 661 (1373)
T KOG0384|consen 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTK-NFSALTKGAKGS-----TPSLLNIMMELKKCCNHPYLIKGAEEK- 661 (1373)
T ss_pred HhhhccCCCCCcceEEEeehhHHHHHHHHHHHHh-hHHHHhccCCCC-----CchHHHHHHHHHHhcCCccccCcHHHH-
Confidence 9999999999999999999999999999999876 233444443332 268999999999999999998643210
Q ss_pred ccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHHhHhhccchhhhhhhhh
Q 000994 747 YLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIF 826 (1196)
Q Consensus 747 ~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~~~~~~~ 826 (1196)
.+. .+
T Consensus 662 -------------------------------------------------------------~~~-~~------------- 666 (1373)
T KOG0384|consen 662 -------------------------------------------------------------ILG-DF------------- 666 (1373)
T ss_pred -------------------------------------------------------------HHH-hh-------------
Confidence 000 00
Q ss_pred hccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhhhccccccCCCCCcchhh
Q 000994 827 SLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRA 906 (1196)
Q Consensus 827 ~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1196)
.+ .
T Consensus 667 ----------------------------------------------------~~---------------~---------- 669 (1373)
T KOG0384|consen 667 ----------------------------------------------------RD---------------K---------- 669 (1373)
T ss_pred ----------------------------------------------------hh---------------c----------
Confidence 00 0
Q ss_pred hhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccccCCcchhcccccccC
Q 000994 907 VTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQH 986 (1196)
Q Consensus 907 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~~~ 986 (1196)
. ...
T Consensus 670 ---------------------------~-------~d~------------------------------------------ 673 (1373)
T KOG0384|consen 670 ---------------------------M-------RDE------------------------------------------ 673 (1373)
T ss_pred ---------------------------c-------hHH------------------------------------------
Confidence 0 000
Q ss_pred ChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCcccccccccHHHHHHHHHH
Q 000994 987 DPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLK 1066 (1196)
Q Consensus 987 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~Ld~LL~ 1066 (1196)
-...+|..||||..||+||.
T Consensus 674 ------------------------------------------------------------~L~~lI~sSGKlVLLDKLL~ 693 (1373)
T KOG0384|consen 674 ------------------------------------------------------------ALQALIQSSGKLVLLDKLLP 693 (1373)
T ss_pred ------------------------------------------------------------HHHHHHHhcCcEEeHHHHHH
Confidence 00123566999999999999
Q ss_pred HHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHcc-CCCceEEEEecCccccccCcccCCE
Q 000994 1067 RLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLLSTRAGGLGINLTAADT 1145 (1196)
Q Consensus 1067 ~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~-~~di~VfLLSTrAGGlGINLTaAdt 1145 (1196)
+|++.||||||||||++|||||++||..|+|+|-||||+++.+-|+.+|+.|+. +++-|||||||||||+||||++|||
T Consensus 694 rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADT 773 (1373)
T KOG0384|consen 694 RLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADT 773 (1373)
T ss_pred HHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccce
Confidence 999999999999999999999999999999999999999999999999999997 7889999999999999999999999
Q ss_pred EEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhcc
Q 000994 1146 VIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNG 1192 (1196)
Q Consensus 1146 VIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~ 1192 (1196)
||+|||||||..|.|||.|||||||++.|.||||||+|||||-|+++
T Consensus 774 VIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilER 820 (1373)
T KOG0384|consen 774 VIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILER 820 (1373)
T ss_pred EEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999865
No 5
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.6e-105 Score=954.84 Aligned_cols=579 Identities=40% Similarity=0.672 Sum_probs=482.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhHHHHHhhhccCCCC
Q 000994 251 GAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQ----QRLNFLIQQTELYSHFMQNKSSSQ 326 (1196)
Q Consensus 251 ~~~~~~~r~~re~~~~wk~~e~~~~~~~~~~eke~~~~~k~~~e~~e~~rq~----rkl~fli~qtely~hf~~~k~~~~ 326 (1196)
..+.|.++..+-++.|+...||+++..-.|.||+.+-++|.++|+.-+|-++ .+|.+|+.||+-|-.-++...+.+
T Consensus 259 ~~~~r~~k~~~~v~~~h~~~er~~~r~~~r~ek~r~~~Lk~~DeE~Y~kl~dq~Kd~Rl~~LL~qt~~yl~sL~s~Vk~q 338 (1157)
T KOG0386|consen 259 LVNNRGNKQNKAVQQWHANQERERERRIDRIEKERASALKHNDEEGYRKLQDQKKDNRLSQLLSQTDSYLPSLSSVVKGQ 338 (1157)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhccccHHHHhhhhhhHHHHHHHHHHHHh
Confidence 4457888999999999999999999999999999999999999999888665 789999999999988887777654
Q ss_pred CCCCCCCCCCCCCchhhcccCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhccchhhhHHHhhhhhHHHhhhhhc
Q 000994 327 PSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDVS 406 (1196)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~a~~a~~~~~~~~~~fd~~~~~~~~~~~~~~~~~~~~ 406 (1196)
..+. +...+...... ++ +.+ .+++ ++ .+..+
T Consensus 339 k~~~-~~~~~~~d~~~--i~-~~a--k~~~--~d-----~~~s~------------------------------------ 369 (1157)
T KOG0386|consen 339 KSEN-PDANSASDISG--IS-GSA--KADV--DD-----HAESN------------------------------------ 369 (1157)
T ss_pred hccc-cccchhhhhhh--hh-hhh--cchh--hh-----hhhcc------------------------------------
Confidence 3310 00000000000 00 000 0000 00 00000
Q ss_pred ccCCCCcccCCCCCCCCCCcccCCchh-hccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc
Q 000994 407 VAGSGNIDLHNPSTMPVTSTVQTPELF-KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI 485 (1196)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~P~~l-~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~ 485 (1196)
.+|.+.........+.||..+ .++|++||+.||.||+.+|+++.+||||||||||||+|+|+++.|+++....
T Consensus 370 ------~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~ 443 (1157)
T KOG0386|consen 370 ------GSYYSTAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQM 443 (1157)
T ss_pred ------hhHHHhcchhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHccc
Confidence 001110000012235677766 4699999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCc
Q 000994 486 WGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKW 565 (1196)
Q Consensus 486 ~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w 565 (1196)
.||+|||||.++|.||..||.+|.|++..+.|.|++..|..+...+. .++|+|++|||+.+.+|...|.+++|
T Consensus 444 ~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir-------~gKFnVLlTtyEyiikdk~lLsKI~W 516 (1157)
T KOG0386|consen 444 QGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQR-------HGKFNVLLTTYEYIIKDKALLSKISW 516 (1157)
T ss_pred CCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHHHHh-------cccceeeeeeHHHhcCCHHHHhccCC
Confidence 99999999999999999999999999999999999999988766432 37899999999999999999999999
Q ss_pred cEEEECCCccccCcccHHHHHHH-hccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCC
Q 000994 566 QYMVLDEAQAIKSSNSIRWKTLL-SFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGG 644 (1196)
Q Consensus 566 ~~VIlDEAH~iKn~~S~~~kal~-~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~ 644 (1196)
.||||||+|+|||..|++...+. .+.+.+|+||||||+||++.|||+||+|+.|.+|++...|.+||..|+.+..+...
T Consensus 517 ~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~e 596 (1157)
T KOG0386|consen 517 KYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVE 596 (1157)
T ss_pred cceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCccc
Confidence 99999999999999999999998 67999999999999999999999999999999999999999999999987653222
Q ss_pred CcchH---HHHHHHHHHHHHHHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHH
Q 000994 645 TLNEH---QLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILN 721 (1196)
Q Consensus 645 ~~~~~---ql~rL~~ILkpfmLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~ 721 (1196)
...++ -++|||.+|+||+|||.|++|+.+||+|+|.++.|+||.-|+.+|....+.-.. +.+. ....+.+..
T Consensus 597 LteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l--~~d~---~~g~~g~k~ 671 (1157)
T KOG0386|consen 597 LTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQL--LKDT---AKGKKGYKP 671 (1157)
T ss_pred ccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCC--CcCc---hhccccchh
Confidence 22222 379999999999999999999999999999999999999999999998764211 1111 112344578
Q ss_pred HHHHHHHHHHhhCCchhhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhccc
Q 000994 722 LMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVG 801 (1196)
Q Consensus 722 lmnlvmqLRKvCnHP~Lfer~~~~s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~ 801 (1196)
|+|.+|||||+||||.+|+..+... .
T Consensus 672 L~N~imqLRKiCNHP~lf~~ve~~~------------------------~------------------------------ 697 (1157)
T KOG0386|consen 672 LFNTIMQLRKLCNHPYLFANVENSY------------------------T------------------------------ 697 (1157)
T ss_pred hhhHhHHHHHhcCCchhhhhhcccc------------------------c------------------------------
Confidence 9999999999999999985321000 0
Q ss_pred CCchhHHHHhHhhccchhhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhch
Q 000994 802 HGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDG 881 (1196)
Q Consensus 802 ~g~~~~~l~~~~ni~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~ 881 (1196)
T Consensus 698 -------------------------------------------------------------------------------- 697 (1157)
T KOG0386|consen 698 -------------------------------------------------------------------------------- 697 (1157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHhhhhccccccCCCCCcchhhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccC
Q 000994 882 ILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIP 961 (1196)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 961 (1196)
+
T Consensus 698 ----------------------------------------------------~--------------------------- 698 (1157)
T KOG0386|consen 698 ----------------------------------------------------L--------------------------- 698 (1157)
T ss_pred ----------------------------------------------------c---------------------------
Confidence 0
Q ss_pred CCCCCCcccccCCcchhcccccccCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCC
Q 000994 962 QAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCP 1041 (1196)
Q Consensus 962 ~~~a~~i~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~ 1041 (1196)
T Consensus 699 -------------------------------------------------------------------------------- 698 (1157)
T KOG0386|consen 699 -------------------------------------------------------------------------------- 698 (1157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHcc-
Q 000994 1042 PMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH- 1120 (1196)
Q Consensus 1042 ~~~~~d~~~li~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~- 1120 (1196)
.+++..++..|||+..||++|.+|++.|||||+|||||+++|+||+||.+++|+|+||||+|+.++|-+++..||.
T Consensus 699 ---~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~P 775 (1157)
T KOG0386|consen 699 ---HYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAP 775 (1157)
T ss_pred ---ccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCC
Confidence 0000122455999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhcc
Q 000994 1121 RSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNG 1192 (1196)
Q Consensus 1121 ~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~ 1192 (1196)
++++|+|||||||||+|+||+.|||||+||+||||++|.||.||||||||+|+|.|+||++-++|||+|+..
T Consensus 776 ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 776 DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999999999999976
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-104 Score=928.01 Aligned_cols=502 Identities=40% Similarity=0.671 Sum_probs=403.9
Q ss_pred ccCCchhh--ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 427 VQTPELFK--GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 427 v~~P~~l~--~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
..||+.+. .+|+|||+-|||||.=+|.++.+||||||||||||+|+|||+++|.+.+. .||+|||||+|++.||.+|
T Consensus 388 ~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsSTleNWlrE 466 (941)
T KOG0389|consen 388 TEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSSTLENWLRE 466 (941)
T ss_pred ccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchhHHHHHHH
Confidence 34888876 48999999999999999999999999999999999999999999998765 7999999999999999999
Q ss_pred HHHhCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHh---cHhhhhccCccEEEECCCccccCccc
Q 000994 505 ISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVA---DEKYFRRVKWQYMVLDEAQAIKSSNS 581 (1196)
Q Consensus 505 i~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~---d~~~l~~~~w~~VIlDEAH~iKn~~S 581 (1196)
|.+|||.++|..|+|+..+|..++..+... ..+|+|++|||+.+.. |.++|+..+|++||.||||.+||..|
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~-----~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~S 541 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIKKN-----KDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTS 541 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHhcc-----CCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccch
Confidence 999999999999999999999998876533 2489999999999855 67899999999999999999999999
Q ss_pred HHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCH-HHHHHHHhhhccc-ccccCCCcchHHHHHHHHHHH
Q 000994 582 IRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSH-EQFNEWFSKGIES-HAEHGGTLNEHQLNRLHAILK 659 (1196)
Q Consensus 582 ~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~-~~F~~~f~~~ie~-~a~~~~~~~~~ql~rL~~ILk 659 (1196)
.+|+.|+.+++++||||||||+||++.||||||.|++|.+|++. .++...|...-.. .......+.++++.|-.+||+
T Consensus 542 eRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~ 621 (941)
T KOG0389|consen 542 ERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMK 621 (941)
T ss_pred HHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999764 5677777643322 222223344567999999999
Q ss_pred HHHHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHHHHhhCCchhh
Q 000994 660 PFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELF 739 (1196)
Q Consensus 660 pfmLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnHP~Lf 739 (1196)
||+|||.|.+|...||||+.++.||+|+..|+.+|..+.+...... .. ...+ +...+ -|++|||||+.|||-||
T Consensus 622 PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~--~~--~~~n-s~~~~-~~vlmqlRK~AnHPLL~ 695 (941)
T KOG0389|consen 622 PFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKL--NE--VSKN-SELKS-GNVLMQLRKAANHPLLF 695 (941)
T ss_pred HHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhc--cc--cccc-ccccc-chHHHHHHHHhcChhHH
Confidence 9999999999999999999999999999999999999877652110 00 0001 00111 56999999999999998
Q ss_pred ccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHHhHhhccchh
Q 000994 740 ERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAE 819 (1196)
Q Consensus 740 er~~~~s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~ 819 (1196)
...-.. +.+. .+.+++
T Consensus 696 R~~Y~d------------------------------------------e~L~----------------~mak~i------ 711 (941)
T KOG0389|consen 696 RSIYTD------------------------------------------EKLR----------------KMAKRI------ 711 (941)
T ss_pred HHhccH------------------------------------------HHHH----------------HHHHHH------
Confidence 542100 0000 000000
Q ss_pred hhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhhhccccccCCC
Q 000994 820 NVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHP 899 (1196)
Q Consensus 820 ~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (1196)
. .. ..+.++..+++.++.+
T Consensus 712 ------l-----------~e------------------------------------~ay~~~n~qyIfEDm~-------- 730 (941)
T KOG0389|consen 712 ------L-----------NE------------------------------------PAYKKANEQYIFEDME-------- 730 (941)
T ss_pred ------h-----------Cc------------------------------------hhhhhcCHHHHHHHHH--------
Confidence 0 00 0000000000000000
Q ss_pred CCcchhhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccccCCcchhc
Q 000994 900 DRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTY 979 (1196)
Q Consensus 900 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~ 979 (1196)
+.
T Consensus 731 ----------------------------------------------~m-------------------------------- 732 (941)
T KOG0389|consen 731 ----------------------------------------------VM-------------------------------- 732 (941)
T ss_pred ----------------------------------------------hh--------------------------------
Confidence 00
Q ss_pred ccccccCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCcccccccccHHH
Q 000994 980 RMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQ 1059 (1196)
Q Consensus 980 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~ 1059 (1196)
.+-.+.++...+...+.+. -+..+|.+|||..
T Consensus 733 ------sDfelHqLc~~f~~~~~f~------------------------------------------L~d~~~mdSgK~r 764 (941)
T KOG0389|consen 733 ------SDFELHQLCCQFRHLSKFQ------------------------------------------LKDDLWMDSGKCR 764 (941)
T ss_pred ------hHHHHHHHHHhcCCCcccc------------------------------------------cCCchhhhhhhHh
Confidence 0011111111111000000 0124478899999
Q ss_pred HHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccC
Q 000994 1060 TLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGIN 1139 (1196)
Q Consensus 1060 ~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGIN 1139 (1196)
+|.+||.++++.|||||||||||.||||||.+|..++|+|+||||||...+|+++|++|+++.+||||||||+|||.|||
T Consensus 765 ~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GIN 844 (941)
T KOG0389|consen 765 KLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGIN 844 (941)
T ss_pred HHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhc
Q 000994 1140 LTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGN 1191 (1196)
Q Consensus 1140 LTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~ 1191 (1196)
||+||+||++|-++||..|.||.|||||+||||+|||||||+++||||.|+.
T Consensus 845 Lt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~ 896 (941)
T KOG0389|consen 845 LTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILR 896 (941)
T ss_pred ccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999985
No 7
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=7.3e-101 Score=898.81 Aligned_cols=463 Identities=35% Similarity=0.597 Sum_probs=403.6
Q ss_pred cccCCchhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHH
Q 000994 426 TVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1196)
Q Consensus 426 ~v~~P~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei 505 (1196)
....|..+.+.|+|||.+||+||++++.++.||||+||||||||+|+|+||+.+.......+|+|||||+++++||.+||
T Consensus 195 ~~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~ 274 (923)
T KOG0387|consen 195 GFKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEF 274 (923)
T ss_pred cccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999998855669999999999999999999
Q ss_pred HHhCCCCccccccCChhh-HHHHhh-ccCccc-c-cccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCccc
Q 000994 506 SRFCPDLKTLPYWGGLQE-RMVLRK-NINPKR-L-YRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNS 581 (1196)
Q Consensus 506 ~k~~p~l~v~~y~G~~~~-r~~l~~-~~~~~~-~-~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S 581 (1196)
.+|.|.++|.+|||+... |..... ...... + -......+|+||||+.++.....+..+.|+|||+||+|+|||++|
T Consensus 275 ~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns 354 (923)
T KOG0387|consen 275 QTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNS 354 (923)
T ss_pred HHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCcc
Confidence 999999999999997552 100000 000000 0 011234579999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcchHH-----HHHHHH
Q 000994 582 IRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQ-----LNRLHA 656 (1196)
Q Consensus 582 ~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~q-----l~rL~~ 656 (1196)
+.+.+|+.+++.+|++||||||||++.|||+|++|+.|+.++++..|.+.|..||..+...+...-+.+ .-.|+.
T Consensus 355 ~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~ 434 (923)
T KOG0387|consen 355 KISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRD 434 (923)
T ss_pred HHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998876665433333 456999
Q ss_pred HHHHHHHHhhhhhhhc-cCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHHHHhhCC
Q 000994 657 ILKPFMLRRVKKDVIS-ELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNH 735 (1196)
Q Consensus 657 ILkpfmLRR~KkdV~~-eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnH 735 (1196)
+++||+|||+|.+|.. .||.|.|++|+|.||+.|+.+|+++.+.-.+..++++... ++.-+.-|||+|||
T Consensus 435 lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~---------~l~Gi~iLrkICnH 505 (923)
T KOG0387|consen 435 LISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRN---------CLSGIDILRKICNH 505 (923)
T ss_pred HhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCcc---------ceechHHHHhhcCC
Confidence 9999999999999988 9999999999999999999999999887666666655432 23345568999999
Q ss_pred chhhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHHhHhhc
Q 000994 736 PELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNI 815 (1196)
Q Consensus 736 P~Lfer~~~~s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni 815 (1196)
|+|+.+.+..+.
T Consensus 506 Pdll~~~~~~~~-------------------------------------------------------------------- 517 (923)
T KOG0387|consen 506 PDLLDRRDEDEK-------------------------------------------------------------------- 517 (923)
T ss_pred cccccCcccccc--------------------------------------------------------------------
Confidence 999765320000
Q ss_pred cchhhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhhhccccc
Q 000994 816 FSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELN 895 (1196)
Q Consensus 816 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (1196)
T Consensus 518 -------------------------------------------------------------------------------- 517 (923)
T KOG0387|consen 518 -------------------------------------------------------------------------------- 517 (923)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcchhhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccccCCc
Q 000994 896 ENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDR 975 (1196)
Q Consensus 896 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~ 975 (1196)
T Consensus 518 -------------------------------------------------------------------------------- 517 (923)
T KOG0387|consen 518 -------------------------------------------------------------------------------- 517 (923)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhcccccccCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCcccccccc
Q 000994 976 NFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDS 1055 (1196)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~S 1055 (1196)
+.+|.+..+..|
T Consensus 518 --------------------------------------------------------------------~~~D~~g~~k~s 529 (923)
T KOG0387|consen 518 --------------------------------------------------------------------QGPDYEGDPKRS 529 (923)
T ss_pred --------------------------------------------------------------------cCCCcCCChhhc
Confidence 000000113459
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMN-YRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~-~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
||+.+|..||..++.+|||||+|||-..|||+||.+|. ..||+|+|+||+|+...|+.+|++||.+..++||||+||+|
T Consensus 530 GKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvG 609 (923)
T KOG0387|consen 530 GKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVG 609 (923)
T ss_pred chHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccc
Confidence 99999999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
|+|+|||.||+||+|||||||+.|.||-+|||||||||+|+||||+|.|||||+||.+|
T Consensus 610 GLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQ 668 (923)
T KOG0387|consen 610 GLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQ 668 (923)
T ss_pred ccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999765
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=7.3e-98 Score=939.91 Aligned_cols=449 Identities=45% Similarity=0.799 Sum_probs=398.8
Q ss_pred ccCCchhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHH
Q 000994 427 VQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1196)
Q Consensus 427 v~~P~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~ 506 (1196)
..+|..+.++|+|||+.||+||+.++.+|.|||||||||||||+|+|+++.++....+..+|+|||||++++.||.+||.
T Consensus 160 ~~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~ 239 (1033)
T PLN03142 160 LVQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIR 239 (1033)
T ss_pred ccCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999887777899999999999999999999
Q ss_pred HhCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHH
Q 000994 507 RFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKT 586 (1196)
Q Consensus 507 k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~ka 586 (1196)
+|+|.++++.|+|+...|........ ....|+|+||||+++.++...|..+.|++|||||||+|||..|.++++
T Consensus 240 kw~p~l~v~~~~G~~~eR~~~~~~~~------~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklska 313 (1033)
T PLN03142 240 RFCPVLRAVKFHGNPEERAHQREELL------VAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKT 313 (1033)
T ss_pred HHCCCCceEEEeCCHHHHHHHHHHHh------cccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHH
Confidence 99999999999999888766544321 125689999999999999999999999999999999999999999999
Q ss_pred HHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHHHhh
Q 000994 587 LLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRV 666 (1196)
Q Consensus 587 l~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~ql~rL~~ILkpfmLRR~ 666 (1196)
+..+++++||+|||||++|++.|||+||+||.|+.|++...|.+||..+.. ......+.+||.+|+||||||+
T Consensus 314 lr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~-------~~~~e~i~~L~~~L~pf~LRR~ 386 (1033)
T PLN03142 314 MRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE-------NDQQEVVQQLHKVLRPFLLRRL 386 (1033)
T ss_pred HHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc-------cchHHHHHHHHHHhhHHHhhhh
Confidence 999999999999999999999999999999999999999999999976321 1234568899999999999999
Q ss_pred hhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHHHHhhCCchhhccccCCc
Q 000994 667 KKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSS 746 (1196)
Q Consensus 667 KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnHP~Lfer~~~~s 746 (1196)
|++|..+||||.+.+|+|+||+.|+.+|+.+..... +.+.. + .....+++++|+||++||||.||...+...
T Consensus 387 KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~--~~l~~--g----~~~~~LlnilmqLRk~cnHP~L~~~~ep~~ 458 (1033)
T PLN03142 387 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDL--DVVNA--G----GERKRLLNIAMQLRKCCNHPYLFQGAEPGP 458 (1033)
T ss_pred HHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHH--HHHhc--c----ccHHHHHHHHHHHHHHhCCHHhhhcccccC
Confidence 999999999999999999999999999999876531 12211 1 123568999999999999999864211000
Q ss_pred ccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHHhHhhccchhhhhhhhh
Q 000994 747 YLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIF 826 (1196)
Q Consensus 747 ~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~~~~~~~ 826 (1196)
++
T Consensus 459 ~~------------------------------------------------------------------------------ 460 (1033)
T PLN03142 459 PY------------------------------------------------------------------------------ 460 (1033)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred hccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhhhccccccCCCCCcchhh
Q 000994 827 SLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRA 906 (1196)
Q Consensus 827 ~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1196)
.
T Consensus 461 -----------------------~-------------------------------------------------------- 461 (1033)
T PLN03142 461 -----------------------T-------------------------------------------------------- 461 (1033)
T ss_pred -----------------------c--------------------------------------------------------
Confidence 0
Q ss_pred hhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccccCCcchhcccccccC
Q 000994 907 VTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQH 986 (1196)
Q Consensus 907 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~~~ 986 (1196)
T Consensus 462 -------------------------------------------------------------------------------- 461 (1033)
T PLN03142 462 -------------------------------------------------------------------------------- 461 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCcccccccccHHHHHHHHHH
Q 000994 987 DPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLK 1066 (1196)
Q Consensus 987 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~Ld~LL~ 1066 (1196)
....++..|||+.+|+.||.
T Consensus 462 ------------------------------------------------------------~~e~lie~SgKl~lLdkLL~ 481 (1033)
T PLN03142 462 ------------------------------------------------------------TGEHLVENSGKMVLLDKLLP 481 (1033)
T ss_pred ------------------------------------------------------------chhHHhhhhhHHHHHHHHHH
Confidence 00012345999999999999
Q ss_pred HHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHcc-CCCceEEEEecCccccccCcccCCE
Q 000994 1067 RLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLLSTRAGGLGINLTAADT 1145 (1196)
Q Consensus 1067 ~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~-~~di~VfLLSTrAGGlGINLTaAdt 1145 (1196)
.++..|+||||||||+.|+|+|+++|..+|+.|+||||+++.++|..+|++||. +++.+||||||+|||+|||||+||+
T Consensus 482 ~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~ 561 (1033)
T PLN03142 482 KLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADI 561 (1033)
T ss_pred HHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCE
Confidence 999999999999999999999999999999999999999999999999999987 4568999999999999999999999
Q ss_pred EEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1146 VIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1146 VIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
||+||+||||+.+.|||||||||||+++|+|||||++|||||+|+.++
T Consensus 562 VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera 609 (1033)
T PLN03142 562 VILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 609 (1033)
T ss_pred EEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999754
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=1.6e-93 Score=860.15 Aligned_cols=469 Identities=36% Similarity=0.601 Sum_probs=392.2
Q ss_pred ccCCchhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcc------cCCcEEEEeCCccHHH
Q 000994 427 VQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKN------IWGPFLVVAPASVLNN 500 (1196)
Q Consensus 427 v~~P~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~------~~gp~LIV~P~sll~n 500 (1196)
...|-.++..||.||.+||+||..+...+..|||||+||||||+|+|.+++.-..... ..-|.|||||.++..+
T Consensus 966 y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGH 1045 (1549)
T KOG0392|consen 966 YKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGH 1045 (1549)
T ss_pred cccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhH
Confidence 4566678899999999999999999999999999999999999999999987554331 1258999999999999
Q ss_pred HHHHHHHhCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcc
Q 000994 501 WADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSN 580 (1196)
Q Consensus 501 W~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~ 580 (1196)
|+.|+.+|+|-++|+.|.|.+.+|..+|... ...+|+||||+.+++|..+|.++.|.|+|+||+|-|||..
T Consensus 1046 W~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~---------~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~k 1116 (1549)
T KOG0392|consen 1046 WKSEVKKFFPFLKVLQYVGPPAERRELRDQY---------KNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSK 1116 (1549)
T ss_pred HHHHHHHhcchhhhhhhcCChHHHHHHHhhc---------cccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchH
Confidence 9999999999999999999999999887654 3568999999999999999999999999999999999999
Q ss_pred cHHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcc-----hHHHHHHH
Q 000994 581 SIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLN-----EHQLNRLH 655 (1196)
Q Consensus 581 S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~-----~~ql~rL~ 655 (1196)
++.+++++++.+.||++|||||||||+.|||||++||||+++|+...|.+.|.+||-.......... -..++.||
T Consensus 1117 tkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLH 1196 (1549)
T KOG0392|consen 1117 TKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALH 1196 (1549)
T ss_pred HHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999976554433322 23588899
Q ss_pred HHHHHHHHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhh--hhhccccCCcchHhHHHHHHHHHHHHHhh
Q 000994 656 AILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLA--GLFDNSRGHLNEKKILNLMNIVIQLRKVC 733 (1196)
Q Consensus 656 ~ILkpfmLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~--~ll~~~~~~~~~~~~~~lmnlvmqLRKvC 733 (1196)
.-.-||||||.|.||.++||||+.++.||+||+.|+++|+.+..+.... ...+++...... ...+++..+.-+||.|
T Consensus 1197 KqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt-~~~HvFqaLqYlrKLc 1275 (1549)
T KOG0392|consen 1197 KQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGT-DKTHVFQALQYLRKLC 1275 (1549)
T ss_pred HHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCc-chHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999997763221 111211111111 2678999999999999
Q ss_pred CCchhhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHHhHh
Q 000994 734 NHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRF 813 (1196)
Q Consensus 734 nHP~Lfer~~~~s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ 813 (1196)
|||.|+-..- -|.+..
T Consensus 1276 nHpaLvlt~~-------------------------------------hp~la~--------------------------- 1291 (1549)
T KOG0392|consen 1276 NHPALVLTPV-------------------------------------HPDLAA--------------------------- 1291 (1549)
T ss_pred CCcceeeCCC-------------------------------------cchHHH---------------------------
Confidence 9998852100 000000
Q ss_pred hccchhhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhhhccc
Q 000994 814 NIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGE 893 (1196)
Q Consensus 814 ni~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (1196)
+
T Consensus 1292 -i------------------------------------------------------------------------------ 1292 (1549)
T KOG0392|consen 1292 -I------------------------------------------------------------------------------ 1292 (1549)
T ss_pred -H------------------------------------------------------------------------------
Confidence 0
Q ss_pred cccCCCCCcchhhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccccC
Q 000994 894 LNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCS 973 (1196)
Q Consensus 894 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~ 973 (1196)
..+......
T Consensus 1293 ----------------------------------------------~~~l~~~~~------------------------- 1301 (1549)
T KOG0392|consen 1293 ----------------------------------------------VSHLAHFNS------------------------- 1301 (1549)
T ss_pred ----------------------------------------------HHHHHHhhh-------------------------
Confidence 000000000
Q ss_pred CcchhcccccccCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCcccccc
Q 000994 974 DRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLT 1053 (1196)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~ 1053 (1196)
.+ .-+.
T Consensus 1302 ----------~L----------------------------------------------------------------Hdi~ 1307 (1549)
T KOG0392|consen 1302 ----------SL----------------------------------------------------------------HDIQ 1307 (1549)
T ss_pred ----------hH----------------------------------------------------------------HHhh
Confidence 00 0023
Q ss_pred cccHHHHHHHHHHHHh--------------hCCCeEEEEecchHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHH
Q 000994 1054 DSGKLQTLDILLKRLR--------------AENHRVLLFAQMTKMLNILEDYMNYR---KYRYLRLDGSSTIMDRRDMVR 1116 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk--------------~~ghKVLIFSQ~t~mlDlLee~L~~r---g~~y~rLDGStk~~dR~~~V~ 1116 (1196)
.|+||.+|.+||.+.- ..|||||||||+..|+|++|.-|-.. .+.|+|||||.++.+|.++|.
T Consensus 1308 hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~ 1387 (1549)
T KOG0392|consen 1308 HSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVE 1387 (1549)
T ss_pred hchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHH
Confidence 3566666666666542 24799999999999999999998543 678999999999999999999
Q ss_pred HHccCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1117 DFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1117 dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
+||+||.|-|+||.|..||+|+|||+||||||||.||||..|.|||||||||||+|-|.||||||+||+||+|+.-|
T Consensus 1388 ~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQ 1464 (1549)
T KOG0392|consen 1388 RFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQ 1464 (1549)
T ss_pred HhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998543
No 10
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=6e-80 Score=687.16 Aligned_cols=526 Identities=27% Similarity=0.424 Sum_probs=393.8
Q ss_pred CcccCCchhhccCcHHHHHHHHHHHHhhh-cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHH
Q 000994 425 STVQTPELFKGSLKEYQLKGLQWLVNCYE-QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWAD 503 (1196)
Q Consensus 425 ~~v~~P~~l~~~LrpyQl~gl~wL~~~~~-~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~ 503 (1196)
..++||..+...|.|||++||.|+..... .-.|||||||||+|||+|+||++..-.. ..|+|||||.-.+.||.+
T Consensus 173 e~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~----ra~tLVvaP~VAlmQW~n 248 (791)
T KOG1002|consen 173 ERAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD----RAPTLVVAPTVALMQWKN 248 (791)
T ss_pred hcccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc----cCCeeEEccHHHHHHHHH
Confidence 46789999999999999999999998887 4568999999999999999999977322 268999999999999999
Q ss_pred HHHHhC-CCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhc-----------------HhhhhccCc
Q 000994 504 EISRFC-PDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD-----------------EKYFRRVKW 565 (1196)
Q Consensus 504 Ei~k~~-p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d-----------------~~~l~~~~w 565 (1196)
||.+|+ +.+++++|||....... ....+||||+|||..+-+. ...|++++|
T Consensus 249 EI~~~T~gslkv~~YhG~~R~~ni-----------kel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~ 317 (791)
T KOG1002|consen 249 EIERHTSGSLKVYIYHGAKRDKNI-----------KELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKF 317 (791)
T ss_pred HHHHhccCceEEEEEecccccCCH-----------HHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhcee
Confidence 999998 56999999997544321 1237899999999998442 456889999
Q ss_pred cEEEECCCccccCcccHHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCH--------------------
Q 000994 566 QYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSH-------------------- 625 (1196)
Q Consensus 566 ~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~-------------------- 625 (1196)
.+||+||||.||+..|.+++++..+.+.+||+|||||+||++.|||+|++||...+|..+
T Consensus 318 ~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c 397 (791)
T KOG1002|consen 318 YRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHC 397 (791)
T ss_pred eeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccC
Confidence 999999999999999999999999999999999999999999999999999988877421
Q ss_pred -----------HHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHHHhhhhhhhcc--CCCceEEEEEcCCCHHHHH
Q 000994 626 -----------EQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISE--LTTKTEVMVHCKLSSRQQA 692 (1196)
Q Consensus 626 -----------~~F~~~f~~~ie~~a~~~~~~~~~ql~rL~~ILkpfmLRR~KkdV~~e--LP~K~E~~V~c~LT~~Qr~ 692 (1196)
..|+....+||......+ +........|.+||-+||||+|-.-..+ |||.+..+-.=-|+..++.
T Consensus 398 ~~c~h~~m~h~~~~n~~mlk~IqkfG~eG--pGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D 475 (791)
T KOG1002|consen 398 DHCSHNIMQHTCFFNHFMLKPIQKFGVEG--PGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKD 475 (791)
T ss_pred CcccchhhhhhhhhcccccccchhhcccC--chHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHH
Confidence 133444456676654333 2345566899999999999999766554 6888877777779999999
Q ss_pred HHHHHHHHH--hhhhhhccccCCcchHhHHHHHHHHHHHHHhhCCchhhccccCCcccccccCCCCCCCCCCCCcccccc
Q 000994 693 FYQAIKNKI--SLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISF 770 (1196)
Q Consensus 693 lY~~l~~~i--s~~~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnHP~Lfer~~~~s~~~f~~~~~~~~~~~~~~~~~~~~ 770 (1196)
+|+.|...- ..+..++ ...--.++.+++.++.+|||...||+|+--
T Consensus 476 ~YeSLY~dSkrkfntyie---eGvvlNNYAnIF~LitRmRQ~aDHP~LVl~----------------------------- 523 (791)
T KOG1002|consen 476 LYESLYKDSKRKFNTYIE---EGVVLNNYANIFTLITRMRQAADHPDLVLY----------------------------- 523 (791)
T ss_pred HHHHHHHhhHHhhhhHHh---hhhhhhhHHHHHHHHHHHHHhccCcceeee-----------------------------
Confidence 999885431 1122222 122245788999999999999999999632
Q ss_pred cCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHHhHhhccchhhhhhhhhhccCCCCCCCCCccccccccccCC
Q 000994 771 SGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDL 850 (1196)
Q Consensus 771 s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~l 850 (1196)
|...|...- +.
T Consensus 524 S~~~n~~~e-------------------nk-------------------------------------------------- 534 (791)
T KOG1002|consen 524 SANANLPDE-------------------NK-------------------------------------------------- 534 (791)
T ss_pred hhhcCCCcc-------------------cc--------------------------------------------------
Confidence 100000000 00
Q ss_pred ChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhhhccccccCCCCCcchhhhhhhhccCccchhhhhhhhccCCC
Q 000994 851 SPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGP 930 (1196)
Q Consensus 851 s~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 930 (1196)
....+|.
T Consensus 535 -------------------------------------------------------------------------~~~~C~l 541 (791)
T KOG1002|consen 535 -------------------------------------------------------------------------GEVECGL 541 (791)
T ss_pred -------------------------------------------------------------------------Cceeecc
Confidence 0000111
Q ss_pred CCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccccCCcchhcccccccCChhHHHHh----hhccccccCCCC
Q 000994 931 GYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLL----IGFARTSENIGP 1006 (1196)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~ 1006 (1196)
+..+.++.+.+.+.+.+ ++.|+ .++.......+|
T Consensus 542 c~d~aed~i~s~ChH~F------------------------------------------CrlCi~eyv~~f~~~~nvtCP 579 (791)
T KOG1002|consen 542 CHDPAEDYIESSCHHKF------------------------------------------CRLCIKEYVESFMENNNVTCP 579 (791)
T ss_pred cCChhhhhHhhhhhHHH------------------------------------------HHHHHHHHHHhhhcccCCCCc
Confidence 11111222222221111 11111 111111111111
Q ss_pred CCCCCCcchhhhhhccCCCccchhh-hhhhccCCCCCCCCCCcccccccccHHHHHHHHHHHHhhCC--CeEEEEecchH
Q 000994 1007 RKPGGPHQLIQEIDSELPVAKPALQ-LTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAEN--HRVLLFAQMTK 1083 (1196)
Q Consensus 1007 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~d~~~li~~SgKL~~Ld~LL~~Lk~~g--hKVLIFSQ~t~ 1083 (1196)
.+... ...+.+.|++. .....|.....+++.+.. -+..|.|+++|.+-|..+++.+ -|.|||||||.
T Consensus 580 ~C~i~---------LsiDlse~alek~~l~~Fk~sSIlnRinm~-~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTS 649 (791)
T KOG1002|consen 580 VCHIG---------LSIDLSEPALEKTDLKGFKASSILNRINMD-DWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTS 649 (791)
T ss_pred ccccc---------ccccccchhhhhcchhhhhhHHHhhhcchh-hhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHH
Confidence 11100 00111222222 122333333334444443 3567999999999999998764 69999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHH
Q 000994 1084 MLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMD 1163 (1196)
Q Consensus 1084 mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmd 1163 (1196)
|||+|+..|...|+.++.|+|||+...|...++.|.++++|.|||+|.+|||+.||||.|++|+++||||||+++.||+|
T Consensus 650 mLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~D 729 (791)
T KOG1002|consen 650 MLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQD 729 (791)
T ss_pred HHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1164 RAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1164 RahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
|+|||||.|||.|.||+.++||||||+.-|
T Consensus 730 RiHRIGQ~rPvkvvrf~iEnsiE~kIieLQ 759 (791)
T KOG1002|consen 730 RIHRIGQYRPVKVVRFCIENSIEEKIIELQ 759 (791)
T ss_pred hHHhhcCccceeEEEeehhccHHHHHHHHH
Confidence 999999999999999999999999998543
No 11
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.3e-78 Score=711.35 Aligned_cols=564 Identities=27% Similarity=0.379 Sum_probs=394.9
Q ss_pred CCCcccCCchhhccCcHHHHHHHHHHHHhh---------hcCCCeEEEeCCCCChHHHHHHHHHHHHH-hcccCCcEEEE
Q 000994 423 VTSTVQTPELFKGSLKEYQLKGLQWLVNCY---------EQGLNGILADEMGLGKTIQAMAFLAHLAE-EKNIWGPFLVV 492 (1196)
Q Consensus 423 ~~~~v~~P~~l~~~LrpyQl~gl~wL~~~~---------~~~~ggILADeMGLGKTlqaIall~~l~~-~~~~~gp~LIV 492 (1196)
....|++|..+...|+|||..||+||+.+. ..|.|||||+.||||||+|+|+|+..+.. ......++|||
T Consensus 655 ~e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV 734 (1567)
T KOG1015|consen 655 KEPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVV 734 (1567)
T ss_pred ccchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEE
Confidence 345689999999999999999999999765 36789999999999999999999987653 33345789999
Q ss_pred eCCccHHHHHHHHHHhCCCCcc------cccc--CChhhHHHHhhccCcccccccCCCceEEEEehhhHHhc--------
Q 000994 493 APASVLNNWADEISRFCPDLKT------LPYW--GGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD-------- 556 (1196)
Q Consensus 493 ~P~sll~nW~~Ei~k~~p~l~v------~~y~--G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d-------- 556 (1196)
||.++++||.+||.+|.+++.. ..+. ..+..|..+...|. ..-.|+|+.|++++..
T Consensus 735 ~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~--------~~ggVmIiGYdmyRnLa~gr~vk~ 806 (1567)
T KOG1015|consen 735 CPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQ--------EDGGVMIIGYDMYRNLAQGRNVKS 806 (1567)
T ss_pred cchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHH--------hcCCEEEEehHHHHHHhcccchhh
Confidence 9999999999999999986333 2221 22344554444443 2226999999998653
Q ss_pred -------HhhhhccCccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHH
Q 000994 557 -------EKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFN 629 (1196)
Q Consensus 557 -------~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~ 629 (1196)
..++..-.+|+||+||||-|||..|.+++++.++++++|++|||||+|||+.|+|+|++|+.|+++++..+|.
T Consensus 807 rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~Efr 886 (1567)
T KOG1015|consen 807 RKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFR 886 (1567)
T ss_pred hHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHH
Confidence 2344556899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccCCCcch-----HHHHHHHHHHHHHHHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhh
Q 000994 630 EWFSKGIESHAEHGGTLNE-----HQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLA 704 (1196)
Q Consensus 630 ~~f~~~ie~~a~~~~~~~~-----~ql~rL~~ILkpfmLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~ 704 (1196)
+.|.+||+++...+++..+ ...+.|+..|+.|+-|+--..+...||||+|++|++.||+.|+.||+.+.+..
T Consensus 887 NRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~--- 963 (1567)
T KOG1015|consen 887 NRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHL--- 963 (1567)
T ss_pred HhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhc---
Confidence 9999999999888876543 34567999999999999999999999999999999999999999999988732
Q ss_pred hhhccccCCcc--hHhHHHHHHHHHHHHHhhCCchhhccccCCc--ccccccCCCCCCCCCCCCcccccccCCCCccccc
Q 000994 705 GLFDNSRGHLN--EKKILNLMNIVIQLRKVCNHPELFERNEGSS--YLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYK 780 (1196)
Q Consensus 705 ~ll~~~~~~~~--~~~~~~lmnlvmqLRKvCnHP~Lfer~~~~s--~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~ 780 (1196)
.+.++... .+....|+..+.-|+++++||....-...+. ..+|.+ .
T Consensus 964 ---~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~se-------------d-------------- 1013 (1567)
T KOG1015|consen 964 ---TGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSE-------------D-------------- 1013 (1567)
T ss_pred ---cccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccc-------------c--------------
Confidence 11111111 1245678899999999999997643211000 000000 0
Q ss_pred cchhhHHHhhhhhhhhhhcccCCchhHHHHhHhhccchhhhhhhhhhccCCCCCCCCCccccccccccCCChH-HHHHhh
Q 000994 781 IPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPA-EVAFLA 859 (1196)
Q Consensus 781 lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~ls~~-e~~~~~ 859 (1196)
.|.+|..+.. +... . .++++ ++..
T Consensus 1014 -------------------------------dm~~fi~D~s-----------de~e---~--------s~~s~d~~~~-- 1038 (1567)
T KOG1015|consen 1014 -------------------------------DMDEFIADDS-----------DETE---M--------SLSSDDYTKK-- 1038 (1567)
T ss_pred -------------------------------chhccccCCC-----------cccc---c--------cccccchhhc--
Confidence 0001100000 0000 0 00000 0000
Q ss_pred hhhhHHHHHHHHHhhhhhhhchhhhHHhhhhccccccCCCCCcchhhhhhhhccCccchhhhhhhhccCCCCCCCcchhh
Q 000994 860 KGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLV 939 (1196)
Q Consensus 860 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 939 (1196)
...+ .....|+..+-...+ +.+... . ....+.
T Consensus 1039 ------------------~ks~----~~s~~Desss~~~~~-g~~ev~-k-----------~k~rk~------------- 1070 (1567)
T KOG1015|consen 1039 ------------------KKSG----KKSKKDESSSGSGSD-GDVEVI-K-----------VKNRKS------------- 1070 (1567)
T ss_pred ------------------cccc----ccccccccccccccC-Cchhhh-h-----------hhhhhc-------------
Confidence 0000 000000000000000 000000 0 000000
Q ss_pred hhhHHHHHHhHhhhcccccccCCCCCCCcccccCCcchhcc-cccccCChhHHH-HhhhccccccCCCCCCCCCCcchhh
Q 000994 940 VSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYR-MTEEQHDPWLKR-LLIGFARTSENIGPRKPGGPHQLIQ 1017 (1196)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~-~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~ 1017 (1196)
+++... ..++..++-..- ++.+++-.+....-..+.+...+++
T Consensus 1071 -----------------------------------r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~ 1115 (1567)
T KOG1015|consen 1071 -----------------------------------RGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVT 1115 (1567)
T ss_pred -----------------------------------cccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhh
Confidence 000000 000011111100 0111110000000011111222222
Q ss_pred hhhccCCCccchhhhhhhccCCCCCCCCCCcccccccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHh---
Q 000994 1018 EIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNY--- 1094 (1196)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~--- 1094 (1196)
+.+ ...+..||||..|.++|...-+-|+|+|||||....||+|+.||.+
T Consensus 1116 e~d----------------------------~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r 1167 (1567)
T KOG1015|consen 1116 EAD----------------------------AEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSR 1167 (1567)
T ss_pred hhh----------------------------hhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcc
Confidence 211 1224669999999999999999999999999999999999999964
Q ss_pred -------------------CCCcEEEEeCCCCHHHHHHHHHHHcc--CCCceEEEEecCccccccCcccCCEEEEeCCCC
Q 000994 1095 -------------------RKYRYLRLDGSSTIMDRRDMVRDFQH--RSDIFVFLLSTRAGGLGINLTAADTVIFYESDW 1153 (1196)
Q Consensus 1095 -------------------rg~~y~rLDGStk~~dR~~~V~dFq~--~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdW 1153 (1196)
+|..|+|||||+..+.|..++..||. +-..++||+||||||+||||.|||+||+||-.|
T Consensus 1168 ~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasW 1247 (1567)
T KOG1015|consen 1168 EGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASW 1247 (1567)
T ss_pred cCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEeccc
Confidence 46789999999999999999999997 334678999999999999999999999999999
Q ss_pred CcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1154 NPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1154 NPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
||+.|.|+|.||||+||||||+|||||+.||+||+||++|
T Consensus 1248 NPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQ 1287 (1567)
T KOG1015|consen 1248 NPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQ 1287 (1567)
T ss_pred CCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHH
Confidence 9999999999999999999999999999999999999886
No 12
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=5.7e-78 Score=728.01 Aligned_cols=473 Identities=32% Similarity=0.492 Sum_probs=385.1
Q ss_pred CcccCCchhhccCcHHHHHHHHHHHHhhh------cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCC----cEEEEeC
Q 000994 425 STVQTPELFKGSLKEYQLKGLQWLVNCYE------QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWG----PFLVVAP 494 (1196)
Q Consensus 425 ~~v~~P~~l~~~LrpyQl~gl~wL~~~~~------~~~ggILADeMGLGKTlqaIall~~l~~~~~~~g----p~LIV~P 494 (1196)
..+...|.+...|||||.+|++||+++.. ...|||+||+||+|||+|+|+||..+.+..+.++ ..|||||
T Consensus 227 v~v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P 306 (776)
T KOG0390|consen 227 VHVVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP 306 (776)
T ss_pred ceEEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc
Confidence 45666778889999999999999998763 4457899999999999999999999999887743 3499999
Q ss_pred CccHHHHHHHHHHhCC--CCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECC
Q 000994 495 ASVLNNWADEISRFCP--DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDE 572 (1196)
Q Consensus 495 ~sll~nW~~Ei~k~~p--~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDE 572 (1196)
++++.||.+||.+|.. .+..+.++|...+...-.+.+ ..+....-..-|.+.||+++..+...+....+++||+||
T Consensus 307 ~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~si--l~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDE 384 (776)
T KOG0390|consen 307 SSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSI--LFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDE 384 (776)
T ss_pred HHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHH--HHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECC
Confidence 9999999999999985 577777888766510000000 000011123469999999999999999999999999999
Q ss_pred CccccCcccHHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcc----h
Q 000994 573 AQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLN----E 648 (1196)
Q Consensus 573 AH~iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~----~ 648 (1196)
+|++||..|.++++|.++++++|++|||||+||++.|++++|+|++|+++++...|...|..++....+.+.... +
T Consensus 385 GHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~ 464 (776)
T KOG0390|consen 385 GHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRERE 464 (776)
T ss_pred CCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999987665544333 3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHH
Q 000994 649 HQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQ 728 (1196)
Q Consensus 649 ~ql~rL~~ILkpfmLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmq 728 (1196)
+.+..|..+..+|++||+-....+.||++.|++|+|.+|+.|+.+|..+.... ....+.+ ..+..+..
T Consensus 465 ~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~~~-----------~~l~~~~~ 532 (776)
T KOG0390|consen 465 ERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRTLKG-----------YALELITK 532 (776)
T ss_pred HHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhhhc-----------chhhHHHH
Confidence 34899999999999999998899999999999999999999999999998754 2222211 14567788
Q ss_pred HHHhhCCchhhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHH
Q 000994 729 LRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISREL 808 (1196)
Q Consensus 729 LRKvCnHP~Lfer~~~~s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~ 808 (1196)
|.++||||.|+...+....
T Consensus 533 L~k~cnhP~L~~~~~~~~~------------------------------------------------------------- 551 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEK------------------------------------------------------------- 551 (776)
T ss_pred HHHHhcCHHhhcccccccc-------------------------------------------------------------
Confidence 9999999998531110000
Q ss_pred HHhHhhccchhhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhh
Q 000994 809 FQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFME 888 (1196)
Q Consensus 809 l~~~~ni~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 888 (1196)
...+ ..|.
T Consensus 552 ------------------------------e~~~-------~~~~----------------------------------- 559 (776)
T KOG0390|consen 552 ------------------------------EKAF-------KNPA----------------------------------- 559 (776)
T ss_pred ------------------------------cccc-------cChH-----------------------------------
Confidence 0000 0000
Q ss_pred hhccccccCCCCCcchhhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCc
Q 000994 889 AMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPI 968 (1196)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i 968 (1196)
.+..+..
T Consensus 560 ---------------------~~~~~~~---------------------------------------------------- 566 (776)
T KOG0390|consen 560 ---------------------LLLDPGK---------------------------------------------------- 566 (776)
T ss_pred ---------------------hhhcccc----------------------------------------------------
Confidence 0000000
Q ss_pred ccccCCcchhcccccccCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCc
Q 000994 969 NVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDP 1048 (1196)
Q Consensus 969 ~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~ 1048 (1196)
+ .. +
T Consensus 567 --------------------------------------------------------------------~-~~------~- 570 (776)
T KOG0390|consen 567 --------------------------------------------------------------------L-KL------D- 570 (776)
T ss_pred --------------------------------------------------------------------c-cc------c-
Confidence 0 00 0
Q ss_pred ccccccccHHHHHHHHHHHHhhC-CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCc-eE
Q 000994 1049 AKLLTDSGKLQTLDILLKRLRAE-NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDI-FV 1126 (1196)
Q Consensus 1049 ~~li~~SgKL~~Ld~LL~~Lk~~-ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di-~V 1126 (1196)
..-...||||..|+.+|...++. ..++++-|++|.++|+++..+..+|+.++||||++++.+|+.+|+.||+.++. ||
T Consensus 571 ~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~v 650 (776)
T KOG0390|consen 571 AGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFV 650 (776)
T ss_pred cccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceE
Confidence 00012389999999999777665 46888888899999999999999999999999999999999999999986555 99
Q ss_pred EEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1127 FLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1127 fLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
||+|++|||.||||++|++||+|||+|||++|+|||+||||.||+|+|+|||||+.|||||+|+++|
T Consensus 651 fLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq 717 (776)
T KOG0390|consen 651 FLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQ 717 (776)
T ss_pred EEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999876
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.9e-73 Score=658.82 Aligned_cols=493 Identities=29% Similarity=0.459 Sum_probs=379.2
Q ss_pred CcccCCchhhccCcHHHHHHHHHHHHhhhc-CCCeEEEeCCCCChHHHHHHHHHHHHHhc-------ccCCcEEEEeCCc
Q 000994 425 STVQTPELFKGSLKEYQLKGLQWLVNCYEQ-GLNGILADEMGLGKTIQAMAFLAHLAEEK-------NIWGPFLVVAPAS 496 (1196)
Q Consensus 425 ~~v~~P~~l~~~LrpyQl~gl~wL~~~~~~-~~ggILADeMGLGKTlqaIall~~l~~~~-------~~~gp~LIV~P~s 496 (1196)
...+.|..+...|.|||..|+.||.....+ +.||||||+||||||+++|+++.+-.... ....++|||||++
T Consensus 314 ~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS 393 (901)
T KOG4439|consen 314 DLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS 393 (901)
T ss_pred cccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH
Confidence 345678899999999999999999988765 55889999999999999999998865431 2223699999999
Q ss_pred cHHHHHHHHHHhC--CCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHh----------cHhhhhccC
Q 000994 497 VLNNWADEISRFC--PDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVA----------DEKYFRRVK 564 (1196)
Q Consensus 497 ll~nW~~Ei~k~~--p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~----------d~~~l~~~~ 564 (1196)
+++||..||.+-+ -.+.|++|||... | .+..+.+ ..||||||||..+.. ....|.++.
T Consensus 394 li~qW~~Ev~~rl~~n~LsV~~~HG~n~-r-----~i~~~~L----~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~ 463 (901)
T KOG4439|consen 394 LIHQWEAEVARRLEQNALSVYLYHGPNK-R-----EISAKEL----RKYDVVITTYNLVANKPDDELEEGKNSSPLARIA 463 (901)
T ss_pred HHHHHHHHHHHHHhhcceEEEEecCCcc-c-----cCCHHHH----hhcceEEEeeeccccCCchhhhcccCccHHHHhh
Confidence 9999999998776 3489999999764 2 2233333 679999999999977 245688899
Q ss_pred ccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCC
Q 000994 565 WQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGG 644 (1196)
Q Consensus 565 w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~ 644 (1196)
|.+|||||||.|||+.++-+.++..+.+.+||+||||||||++.|+|+||.||+..+|++...|.++...+-..+
T Consensus 464 W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g----- 538 (901)
T KOG4439|consen 464 WSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG----- 538 (901)
T ss_pred HHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999876432221
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhhhhhc-----cCCCceEEEEEcCCCHHHHHHHHHHHHHHhh--hhhh-c-----cc-
Q 000994 645 TLNEHQLNRLHAILKPFMLRRVKKDVIS-----ELTTKTEVMVHCKLSSRQQAFYQAIKNKISL--AGLF-D-----NS- 710 (1196)
Q Consensus 645 ~~~~~ql~rL~~ILkpfmLRR~KkdV~~-----eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~--~~ll-~-----~~- 710 (1196)
-.||.-+.|+.||||+|...+. .||.+....+.++|+..+...|+.+...... ..++ . +.
T Consensus 539 ------~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~ 612 (901)
T KOG4439|consen 539 ------ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDG 612 (901)
T ss_pred ------hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 3689999999999999999887 7999999999999999999999887553110 0000 0 00
Q ss_pred --------------------------cCCcchHhHHHHHHHHHHHHHhhCCchhhccccCCcccccccCCCCCCCCCCCC
Q 000994 711 --------------------------RGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGE 764 (1196)
Q Consensus 711 --------------------------~~~~~~~~~~~lmnlvmqLRKvCnHP~Lfer~~~~s~~~f~~~~~~~~~~~~~~ 764 (1196)
.+..+....+.++-++++|||+||||.+.........|.+..
T Consensus 613 ~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g------------ 680 (901)
T KOG4439|consen 613 GYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNG------------ 680 (901)
T ss_pred CccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcC------------
Confidence 011123445668999999999999997754332111111100
Q ss_pred cccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHHhHhhccchhhhhhhhhhccCCCCCCCCCcccccc
Q 000994 765 LEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGF 844 (1196)
Q Consensus 765 ~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 844 (1196)
..+ .+....... .+
T Consensus 681 --------~~~-----------sde~~~e~~------------~l----------------------------------- 694 (901)
T KOG4439|consen 681 --------GDD-----------SDEEQLEED------------NL----------------------------------- 694 (901)
T ss_pred --------cch-----------hhhhhhhhh------------HH-----------------------------------
Confidence 000 000000000 00
Q ss_pred ccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhhhccccccCCCCCcchhhhhhhhccCccchhhhhhh
Q 000994 845 THLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRR 924 (1196)
Q Consensus 845 ~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 924 (1196)
.+....+..
T Consensus 695 ------------------------------------------~el~k~~~T----------------------------- 703 (901)
T KOG4439|consen 695 ------------------------------------------AELEKNDET----------------------------- 703 (901)
T ss_pred ------------------------------------------Hhhhhcccc-----------------------------
Confidence 000000000
Q ss_pred hccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccccCCcchhcccccccCChhHHHHhhhccccccCC
Q 000994 925 KFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENI 1004 (1196)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1004 (1196)
.|++-+.. .
T Consensus 704 ----------------------------------------------~~~~D~~e-------------------------d 712 (901)
T KOG4439|consen 704 ----------------------------------------------DCSDDNCE-------------------------D 712 (901)
T ss_pred ----------------------------------------------cccccccc-------------------------c
Confidence 00000000 0
Q ss_pred CCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCcccccccccHHHHHHHHHHHH-hhCCCeEEEEecchH
Q 000994 1005 GPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRL-RAENHRVLLFAQMTK 1083 (1196)
Q Consensus 1005 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~Ld~LL~~L-k~~ghKVLIFSQ~t~ 1083 (1196)
.| ..++++.|++ ...|.|+..+...|..+ .....||+|-||||.
T Consensus 713 ~p--------------------------------~~~~~q~Fe~---~r~S~Ki~~~l~~le~i~~~skeK~viVSQwts 757 (901)
T KOG4439|consen 713 LP--------------------------------TAFPDQAFEP---DRPSCKIAMVLEILETILTSSKEKVVIVSQWTS 757 (901)
T ss_pred cc--------------------------------ccchhhhccc---ccchhHHHHHHHHHHHHhhcccceeeehhHHHH
Confidence 00 0000111111 24489999988888888 555799999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCC-ceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHH
Q 000994 1084 MLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSD-IFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAM 1162 (1196)
Q Consensus 1084 mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~d-i~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAm 1162 (1196)
+|++++..|...|+.|.-++|+..+.+|+++|++||...+ .+|+|||.-|||+||||+.|+|+|++|..|||+.++||.
T Consensus 758 vLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAc 837 (901)
T KOG4439|consen 758 VLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQAC 837 (901)
T ss_pred HHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHH
Confidence 9999999999999999999999999999999999998544 999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1163 DRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1163 dRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
||++|+||+|+|++|||+|+||||+||...|
T Consensus 838 DRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQ 868 (901)
T KOG4439|consen 838 DRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQ 868 (901)
T ss_pred HHHHHhcccCceEEEEEEecCcHHHHHHHHH
Confidence 9999999999999999999999999998543
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=2.5e-72 Score=727.05 Aligned_cols=474 Identities=39% Similarity=0.657 Sum_probs=396.1
Q ss_pred chhhccCcHHHHHHHHHHH-HhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc-CCcEEEEeCCccHHHHHHHHHHh
Q 000994 431 ELFKGSLKEYQLKGLQWLV-NCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAPASVLNNWADEISRF 508 (1196)
Q Consensus 431 ~~l~~~LrpyQl~gl~wL~-~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~-~gp~LIV~P~sll~nW~~Ei~k~ 508 (1196)
..+...|+|||.+|++||. .+...+.||||||+||||||+|+|+++.++...... .+|+|||||.+++.||.+|+.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 4666899999999999999 788899999999999999999999999986666554 58999999999999999999999
Q ss_pred CCCCc-cccccCChhh----HHHHhhccCcccccccCCCceEEEEehhhHHh---cHhhhhccCccEEEECCCccccCcc
Q 000994 509 CPDLK-TLPYWGGLQE----RMVLRKNINPKRLYRRDAGFHILITSYQLLVA---DEKYFRRVKWQYMVLDEAQAIKSSN 580 (1196)
Q Consensus 509 ~p~l~-v~~y~G~~~~----r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~---d~~~l~~~~w~~VIlDEAH~iKn~~ 580 (1196)
.|.++ +.+|+|.... +..+........ ...+++++|||+.+.. +...+..+.|+++|+||||+|||..
T Consensus 413 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~ 488 (866)
T COG0553 413 APDLRLVLVYHGEKSELDKKREALRDLLKLHL----VIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ 488 (866)
T ss_pred CccccceeeeeCCcccccHHHHHHHHHhhhcc----cceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh
Confidence 99999 9999998753 444444332111 2348999999999999 9999999999999999999999999
Q ss_pred cHHHHHHHhccccceEEeecCCCCCChHHHHHHHH-hhCCCCCC-CHHHHHHHHhhhcccccccCC-CcchHHHHHHHHH
Q 000994 581 SIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLH-FIMPTLFD-SHEQFNEWFSKGIESHAEHGG-TLNEHQLNRLHAI 657 (1196)
Q Consensus 581 S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~-FL~P~~f~-s~~~F~~~f~~~ie~~a~~~~-~~~~~ql~rL~~I 657 (1196)
|..++++..+++.++++|||||++|++.|||++++ |++|++++ +...|..||..++......+. ......+.+|+.+
T Consensus 489 s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (866)
T COG0553 489 SSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKL 568 (866)
T ss_pred hHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999 569999999999887665432 1223456679999
Q ss_pred HHHHHHHhhhhh--hhccCCCceEEEEEcCCCHHHHHHHHHHHHHH-hhhhhhccccCCcch---H--hHHHHHHHHHHH
Q 000994 658 LKPFMLRRVKKD--VISELTTKTEVMVHCKLSSRQQAFYQAIKNKI-SLAGLFDNSRGHLNE---K--KILNLMNIVIQL 729 (1196)
Q Consensus 658 LkpfmLRR~Kkd--V~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~i-s~~~ll~~~~~~~~~---~--~~~~lmnlvmqL 729 (1196)
++||+|||.|.+ |..+||+|++.+++|+|+..|+.+|..+.... .....+......... . ...++++.++++
T Consensus 569 i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 648 (866)
T COG0553 569 LSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRL 648 (866)
T ss_pred HHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 999999999999 89999999999999999999999999988722 111111111000000 0 256789999999
Q ss_pred HHhhCCchhhccc-cCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHH
Q 000994 730 RKVCNHPELFERN-EGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISREL 808 (1196)
Q Consensus 730 RKvCnHP~Lfer~-~~~s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~ 808 (1196)
|++||||.++... .... . ..
T Consensus 649 r~~~~~p~l~~~~~~~~~------------------------~---------------------~~-------------- 669 (866)
T COG0553 649 RQICNHPALVDEGLEATF------------------------D---------------------RI-------------- 669 (866)
T ss_pred HHhccCcccccccccccc------------------------c---------------------hh--------------
Confidence 9999999997532 0000 0 00
Q ss_pred HHhHhhccchhhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhh
Q 000994 809 FQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFME 888 (1196)
Q Consensus 809 l~~~~ni~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 888 (1196)
. ...
T Consensus 670 -----------------------------------------------------------~-----------------~~~ 673 (866)
T COG0553 670 -----------------------------------------------------------V-----------------LLL 673 (866)
T ss_pred -----------------------------------------------------------h-----------------hhh
Confidence 0 000
Q ss_pred hhccccccCCCCCcchhhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCc
Q 000994 889 AMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPI 968 (1196)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i 968 (1196)
..+ .
T Consensus 674 ~~~-~--------------------------------------------------------------------------- 677 (866)
T COG0553 674 RED-K--------------------------------------------------------------------------- 677 (866)
T ss_pred hcc-c---------------------------------------------------------------------------
Confidence 000 0
Q ss_pred ccccCCcchhcccccccCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCc
Q 000994 969 NVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDP 1048 (1196)
Q Consensus 969 ~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~ 1048 (1196)
+ ..+..
T Consensus 678 ---~-----------------------------------------------------------------------~~~~~ 683 (866)
T COG0553 678 ---D-----------------------------------------------------------------------FDYLK 683 (866)
T ss_pred ---c-----------------------------------------------------------------------ccccc
Confidence 0 00000
Q ss_pred ccccccc-cHHHHHHHHH-HHHhhCCC--eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCc
Q 000994 1049 AKLLTDS-GKLQTLDILL-KRLRAENH--RVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDI 1124 (1196)
Q Consensus 1049 ~~li~~S-gKL~~Ld~LL-~~Lk~~gh--KVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di 1124 (1196)
..++..| +|+..|+++| ..++.+|| |||||||||.|+|+|+.+|...++.|+++||+++..+|..+|++|++++++
T Consensus 684 ~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~ 763 (866)
T COG0553 684 KPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEE 763 (866)
T ss_pred chhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCC
Confidence 1224557 9999999999 89999999 999999999999999999999999999999999999999999999998899
Q ss_pred eEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1125 FVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1125 ~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
+|||+|++|||+|||||+|++||+|||||||+++.||||||||+||+++|.||||+++|||||+|+..+
T Consensus 764 ~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~ 832 (866)
T COG0553 764 KVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQ 832 (866)
T ss_pred ceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998754
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.6e-65 Score=591.31 Aligned_cols=529 Identities=24% Similarity=0.387 Sum_probs=377.8
Q ss_pred CCcccCCchhhccCcHHHHHHHHHHHHhh---------hcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000994 424 TSTVQTPELFKGSLKEYQLKGLQWLVNCY---------EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1196)
Q Consensus 424 ~~~v~~P~~l~~~LrpyQl~gl~wL~~~~---------~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P 494 (1196)
..++..-+.+...|+|||+-|++||+... ..|.|||||+.||||||+|+|+|+..+.+... .+++|+|+|
T Consensus 242 ee~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~-AKtVL~ivP 320 (1387)
T KOG1016|consen 242 EEDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTK-AKTVLVIVP 320 (1387)
T ss_pred CcceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCc-cceEEEEEe
Confidence 45677777888999999999999997543 36889999999999999999999988876544 479999999
Q ss_pred CccHHHHHHHHHHhCCC-----------CccccccCC---hhhHHHHhhccCcccccccCCCceEEEEehhhHHhc----
Q 000994 495 ASVLNNWADEISRFCPD-----------LKTLPYWGG---LQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD---- 556 (1196)
Q Consensus 495 ~sll~nW~~Ei~k~~p~-----------l~v~~y~G~---~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d---- 556 (1196)
-.+|.||..||..|.|. ++|+++... ...|..+...|. ..-.|+++.|++++-.
T Consensus 321 iNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv--------~~GGVlLvGYemfRLL~lk~ 392 (1387)
T KOG1016|consen 321 INTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWV--------QTGGVLLVGYEMFRLLILKT 392 (1387)
T ss_pred hHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHh--------ccCCEEEehHHHHHHHHHhc
Confidence 99999999999999986 444444332 223333333332 3345999999988542
Q ss_pred ----------------------------------HhhhhccCccEEEECCCccccCcccHHHHHHHhccccceEEeecCC
Q 000994 557 ----------------------------------EKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTP 602 (1196)
Q Consensus 557 ----------------------------------~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTP 602 (1196)
.+.|-+-..|+||+||+|+|||..+.++.+|..+++++|++|||-|
T Consensus 393 ~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYP 472 (1387)
T KOG1016|consen 393 LPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYP 472 (1387)
T ss_pred ccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccc
Confidence 1223334689999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcchHHHH-----HHHHHHHHHHHHhhhhhhhccCCCc
Q 000994 603 IQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLN-----RLHAILKPFMLRRVKKDVISELTTK 677 (1196)
Q Consensus 603 iqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~ql~-----rL~~ILkpfmLRR~KkdV~~eLP~K 677 (1196)
+||++-|+|+|++|+.|.++++..+|.+.|.+||.++.+.+++.+...|. -||.+|+.|+.||....+..-||.|
T Consensus 473 LQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k 552 (1387)
T KOG1016|consen 473 LQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEK 552 (1387)
T ss_pred cccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccc
Confidence 99999999999999999999999999999999999999999988776654 4999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHH---HHhhCCchhhccccCCcccccccCC
Q 000994 678 TEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQL---RKVCNHPELFERNEGSSYLYFGEIP 754 (1196)
Q Consensus 678 ~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqL---RKvCnHP~Lfer~~~~s~~~f~~~~ 754 (1196)
.|+++.+.+|..||.||+.+.-... .+...+ ....+|-++.| .|++|||+++-+.-.....
T Consensus 553 ~EyViLvr~s~iQR~LY~~Fm~d~~-r~~~~~---------~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~------ 616 (1387)
T KOG1016|consen 553 KEYVILVRKSQIQRQLYRNFMLDAK-REIAAN---------NDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKR------ 616 (1387)
T ss_pred cceEEEEeHHHHHHHHHHHHHHHHH-Hhhccc---------cccccChHHHHHHHHHhcCChHHHHHHHHHhhh------
Confidence 9999999999999999998763211 111111 11234445554 5677999986432100000
Q ss_pred CCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHHhHhhccchhhhhhhhhhccCCCCC
Q 000994 755 NSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDA 834 (1196)
Q Consensus 755 ~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~~~~~~~~~~~~s~~ 834 (1196)
.....-++++....|... +...+..
T Consensus 617 ---a~e~dl~vee~~~ag~~~------------------------------------~~~P~~~---------------- 641 (1387)
T KOG1016|consen 617 ---AEEDDLRVEEMKFAGLQQ------------------------------------QQSPFNS---------------- 641 (1387)
T ss_pred ---hhhhhhhHHHHhhhcccc------------------------------------cCCCCCC----------------
Confidence 000000000000000000 0000000
Q ss_pred CCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchh-hhHHhhhhccccccCCCCCcchhhhhhhhcc
Q 000994 835 SPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGI-LDVFMEAMDGELNENHPDRGKVRAVTRLLLI 913 (1196)
Q Consensus 835 ~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 913 (1196)
........ +++. . ...+... ...+.+. ...+.+ .+++.
T Consensus 642 -~~~~~s~~------laSs-~---------~k~~n~t----~kp~~s~~~p~f~e-e~~e~------------------- 680 (1387)
T KOG1016|consen 642 -IPSNPSTP------LASS-T---------SKSANKT----KKPRGSKKAPKFDE-EDEEV------------------- 680 (1387)
T ss_pred -CCCCCCCc------ccch-h---------hhhhccc----CCcccCcCCCCccc-ccccc-------------------
Confidence 00000000 0000 0 0000000 0000000 000000 00000
Q ss_pred CccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccccCCcchhcccccccCChhHHHH
Q 000994 914 PSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRL 993 (1196)
Q Consensus 914 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~~~~~~~~~~ 993 (1196)
+....|...+
T Consensus 681 ----------------------------------------------------------------------~~y~~w~~el 690 (1387)
T KOG1016|consen 681 ----------------------------------------------------------------------EKYSDWTFEL 690 (1387)
T ss_pred ----------------------------------------------------------------------cchhhHHHHH
Confidence 0000111111
Q ss_pred hhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCcccccccccHHHHHHHHHHHHhhCCC
Q 000994 994 LIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENH 1073 (1196)
Q Consensus 994 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~Ld~LL~~Lk~~gh 1073 (1196)
+.... ..++..+.|+..+.++|.+-.+-|.
T Consensus 691 ~~nYq--------------------------------------------------~gvLen~pk~V~~~~~~des~~~g~ 720 (1387)
T KOG1016|consen 691 FENYQ--------------------------------------------------EGVLENGPKIVISLEILDESTQIGE 720 (1387)
T ss_pred Hhhhh--------------------------------------------------cccccCCCceEEEEeeeccccccCc
Confidence 11000 1223446666667777777777799
Q ss_pred eEEEEecchHHHHHHHHHHHhCC------------------CcEEEEeCCCCHHHHHHHHHHHccCCCce-EEEEecCcc
Q 000994 1074 RVLLFAQMTKMLNILEDYMNYRK------------------YRYLRLDGSSTIMDRRDMVRDFQHRSDIF-VFLLSTRAG 1134 (1196)
Q Consensus 1074 KVLIFSQ~t~mlDlLee~L~~rg------------------~~y~rLDGStk~~dR~~~V~dFq~~~di~-VfLLSTrAG 1134 (1196)
|+|||||-...||+|+++|..+. ..|+|+||+++..+|.+++++||..+.+- .||||||||
T Consensus 721 kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag 800 (1387)
T KOG1016|consen 721 KILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAG 800 (1387)
T ss_pred eEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccc
Confidence 99999999999999999998753 47999999999999999999999988887 999999999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
.+||||..|++||+||-.|||..|+||++|++|.||+|+++|||||..+|.|-+|+++|
T Consensus 801 ~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQ 859 (1387)
T KOG1016|consen 801 SLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQ 859 (1387)
T ss_pred cccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876
No 16
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.7e-58 Score=563.61 Aligned_cols=511 Identities=26% Similarity=0.374 Sum_probs=368.9
Q ss_pred HHHHHHHHHHHHhhh-cCCCeEEEeCCCCChHHHHHHHHHHHHHhcc------cCCcEEEEeCCccHHHHHHHHHHhCC-
Q 000994 439 EYQLKGLQWLVNCYE-QGLNGILADEMGLGKTIQAMAFLAHLAEEKN------IWGPFLVVAPASVLNNWADEISRFCP- 510 (1196)
Q Consensus 439 pyQl~gl~wL~~~~~-~~~ggILADeMGLGKTlqaIall~~l~~~~~------~~gp~LIV~P~sll~nW~~Ei~k~~p- 510 (1196)
.+|..+-.|+..... .-.|||+||+||+|||+++|+++........ ..+.+|||||.+++.+|..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 566666555554432 3458999999999999999999987654443 45789999999999999999966653
Q ss_pred -CCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHh
Q 000994 511 -DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS 589 (1196)
Q Consensus 511 -~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~ 589 (1196)
.+.+++|+| |. ... ....+++||||||.++.. ..+..+.|-+||+||||.|+|.++..++++..
T Consensus 215 ~~l~v~v~~g----r~-----kd~----~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~ 279 (674)
T KOG1001|consen 215 DKLSIYVYHG----RT-----KDK----SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQ 279 (674)
T ss_pred cceEEEEecc----cc-----ccc----chhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhhee
Confidence 578888998 11 111 123778899999999986 45667999999999999999999999999999
Q ss_pred ccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHHHhhhhh
Q 000994 590 FNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKD 669 (1196)
Q Consensus 590 l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~ql~rL~~ILkpfmLRR~Kkd 669 (1196)
+.+.+||+|||||+||++.|+|+++.|+.-.++.....|...+..|+..... ..-+.++..+|+++|+||+|..
T Consensus 280 L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~------~~~~k~l~~~L~~v~lrrtK~~ 353 (674)
T KOG1001|consen 280 LDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY------KEGVKTLQGILKKVMLRRTKEM 353 (674)
T ss_pred eccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH------HHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999988876542 3558999999999999999962
Q ss_pred -----hhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHHHHhhCCchhhccccC
Q 000994 670 -----VISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEG 744 (1196)
Q Consensus 670 -----V~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnHP~Lfer~~~ 744 (1196)
...+|||++..++.|+++..++.+|.++.......--. .........++..++..++++|++|+||.|+-....
T Consensus 354 ~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~-~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~ 432 (674)
T KOG1001|consen 354 EVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSN-YANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMD 432 (674)
T ss_pred cccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHH-HhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhh
Confidence 24489999999999999999999999997764321110 111122345678889999999999999998632110
Q ss_pred CcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHHhHhhccchhhhhhh
Q 000994 745 SSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQS 824 (1196)
Q Consensus 745 ~s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~~~~~ 824 (1196)
.. ..++..++ ....
T Consensus 433 ~~----------------------~~~~~~~~---------------------------~~~~----------------- 446 (674)
T KOG1001|consen 433 SL----------------------GDSGSAAA---------------------------LIIR----------------- 446 (674)
T ss_pred cc----------------------ccccccch---------------------------HHHH-----------------
Confidence 00 00000000 0000
Q ss_pred hhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhhhccccccCCCCCcch
Q 000994 825 IFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKV 904 (1196)
Q Consensus 825 ~~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1196)
+..++. .+ ..+
T Consensus 447 --------------------------------------~i~~l~----------------------~~-~~c-------- 457 (674)
T KOG1001|consen 447 --------------------------------------LIVDLS----------------------VS-HWC-------- 457 (674)
T ss_pred --------------------------------------HHHHHh----------------------hc-ccc--------
Confidence 000000 00 000
Q ss_pred hhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccccCCcchhcccccc
Q 000994 905 RAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEE 984 (1196)
Q Consensus 905 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~ 984 (1196)
+.+.+ .+.++-..|
T Consensus 458 ---------~ic~~---------------------------------------------~~~~~it~c------------ 471 (674)
T KOG1001|consen 458 ---------HICCD---------------------------------------------LDSFFITRC------------ 471 (674)
T ss_pred ---------ccccc---------------------------------------------cccceeecc------------
Confidence 00000 000000011
Q ss_pred cCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCcccccccccHHHHHHHH
Q 000994 985 QHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDIL 1064 (1196)
Q Consensus 985 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~Ld~L 1064 (1196)
.+..+..++......++.. .++.. +..+.+. ..++-.+....+.. ....|.|+..++..
T Consensus 472 -~h~~c~~c~~~~i~~~~~~--~~~~c-r~~l~~~---------------~l~s~~~~~~~~~~--~~~~s~ki~~~~~~ 530 (674)
T KOG1001|consen 472 -GHDFCVECLKKSIQQSENA--PCPLC-RNVLKEK---------------KLLSANPLPSIIND--LLPESSKIYAFLKI 530 (674)
T ss_pred -cchHHHHHHHhccccccCC--CCcHH-HHHHHHH---------------HHhhcccccchhhh--ccchhhhhHHHHHH
Confidence 1112222222111111110 00000 0000000 00000000000000 11158899999999
Q ss_pred HHHHhhCCC-eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccC
Q 000994 1065 LKRLRAENH-RVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAA 1143 (1196)
Q Consensus 1065 L~~Lk~~gh-KVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaA 1143 (1196)
|...+.... +++|||||+.++++++-.|...++.|.++||.+....|.+.+.+|..+++..|+|+|++|||+|||||+|
T Consensus 531 l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a 610 (674)
T KOG1001|consen 531 LQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAA 610 (674)
T ss_pred HhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhh
Confidence 996554445 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1144 DTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1144 dtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
++||..||||||+++.||||||||+||+|+|+|+||+.++||||||++-|
T Consensus 611 ~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq 660 (674)
T KOG1001|consen 611 SHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQ 660 (674)
T ss_pred hHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999755
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=2.2e-56 Score=500.53 Aligned_cols=412 Identities=28% Similarity=0.394 Sum_probs=319.0
Q ss_pred CchhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhC
Q 000994 430 PELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFC 509 (1196)
Q Consensus 430 P~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~ 509 (1196)
|+.+...|.|||++||+|-++ .|+.++||||||||||+|||+...+...+ +|.|||||+++...|.+++.+|.
T Consensus 192 d~kLvs~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyraE----wplliVcPAsvrftWa~al~r~l 264 (689)
T KOG1000|consen 192 DPKLVSRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRAE----WPLLIVCPASVRFTWAKALNRFL 264 (689)
T ss_pred CHHHHHhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhhc----CcEEEEecHHHhHHHHHHHHHhc
Confidence 455666899999999999885 77789999999999999999999887765 69999999999999999999999
Q ss_pred CCCcc-ccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHH
Q 000994 510 PDLKT-LPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLL 588 (1196)
Q Consensus 510 p~l~v-~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~ 588 (1196)
|...- .+..+..+. ...+ .....|.|+||+.+......+..-+|.+||+||+|++|+..+++.+++.
T Consensus 265 ps~~pi~vv~~~~D~---------~~~~---~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~ 332 (689)
T KOG1000|consen 265 PSIHPIFVVDKSSDP---------LPDV---CTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAAT 332 (689)
T ss_pred ccccceEEEecccCC---------cccc---ccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhh
Confidence 87544 222221111 0001 1123599999999999999999999999999999999999999999998
Q ss_pred hc--cccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHH-HHHHHh
Q 000994 589 SF--NCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILK-PFMLRR 665 (1196)
Q Consensus 589 ~l--~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~ql~rL~~ILk-pfmLRR 665 (1196)
-+ .+.+.+||||||--.++.|||.++..+++.+|....+|-..|+..-.-.... ....-.++..|+.+|. ..|+||
T Consensus 333 dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~-Dykg~tnl~EL~~lL~k~lMIRR 411 (689)
T KOG1000|consen 333 DLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCF-DYKGCTNLEELAALLFKRLMIRR 411 (689)
T ss_pred hHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceee-ecCCCCCHHHHHHHHHHHHHHHH
Confidence 77 7889999999999999999999999999999999999988887533221111 0111234677888875 569999
Q ss_pred hhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHHHHhhCCchhhccccCC
Q 000994 666 VKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGS 745 (1196)
Q Consensus 666 ~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnHP~Lfer~~~~ 745 (1196)
+|.+|..+||||..++|++ .+.++-+.-+++..... ...... +|+- +|-.|..
T Consensus 412 lK~dvL~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~---------~~t~~~--------~~e~----~~~~l~l----- 464 (689)
T KOG1000|consen 412 LKADVLKQLPPKRREVVYV-SGGRIDARMDDLVKAAA---------DYTKVN--------SMER----KHESLLL----- 464 (689)
T ss_pred HHHHHHhhCCccceEEEEE-cCCccchHHHHHHHHhh---------hcchhh--------hhhh----hhHHHHH-----
Confidence 9999999999996555553 44444333333322100 000000 0000 0000000
Q ss_pred cccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHHhHhhccchhhhhhhh
Q 000994 746 SYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSI 825 (1196)
Q Consensus 746 s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~~~~~~ 825 (1196)
.|.
T Consensus 465 ---------------------------------------~y~-------------------------------------- 467 (689)
T KOG1000|consen 465 ---------------------------------------FYS-------------------------------------- 467 (689)
T ss_pred ---------------------------------------HHH--------------------------------------
Confidence 000
Q ss_pred hhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhhhccccccCCCCCcchh
Q 000994 826 FSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVR 905 (1196)
Q Consensus 826 ~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (1196)
T Consensus 468 -------------------------------------------------------------------------------- 467 (689)
T KOG1000|consen 468 -------------------------------------------------------------------------------- 467 (689)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccccCCcchhccccccc
Q 000994 906 AVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQ 985 (1196)
Q Consensus 906 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~~ 985 (1196)
T Consensus 468 -------------------------------------------------------------------------------- 467 (689)
T KOG1000|consen 468 -------------------------------------------------------------------------------- 467 (689)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCcccccccccHHHHHHHHH
Q 000994 986 HDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILL 1065 (1196)
Q Consensus 986 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~Ld~LL 1065 (1196)
.+.-.|+....+.|
T Consensus 468 ------------------------------------------------------------------~tgiaK~~av~eyi 481 (689)
T KOG1000|consen 468 ------------------------------------------------------------------LTGIAKAAAVCEYI 481 (689)
T ss_pred ------------------------------------------------------------------HhcccccHHHHHHH
Confidence 01112333333333
Q ss_pred HH----HhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcc
Q 000994 1066 KR----LRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLT 1141 (1196)
Q Consensus 1066 ~~----Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLT 1141 (1196)
.. .-+.+.|+|||...+.|||-|+.++..+++.++||||+++..+|..++..||.+.++.|-+||.-|||+||+||
T Consensus 482 ~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~t 561 (689)
T KOG1000|consen 482 LENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLT 561 (689)
T ss_pred HhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeee
Confidence 22 23447899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhc
Q 000994 1142 AADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGN 1191 (1196)
Q Consensus 1142 aAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~ 1191 (1196)
+|+.|+|.+..|||.+..||.|||||+|||--|.||+|+++||++|.+..
T Consensus 562 Aa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp 611 (689)
T KOG1000|consen 562 AASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWP 611 (689)
T ss_pred ccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHH
Confidence 99999999999999999999999999999999999999999999998764
No 18
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=9.8e-57 Score=539.83 Aligned_cols=295 Identities=40% Similarity=0.682 Sum_probs=261.9
Q ss_pred cCCchhh---ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 428 QTPELFK---GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 428 ~~P~~l~---~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
.+|..+. +.|.+||.+|++|+...+..+..+|||||||||||+|+|+|+..+.......+|+||++|.+++.||..|
T Consensus 284 ~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e 363 (696)
T KOG0383|consen 284 DQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWERE 363 (696)
T ss_pred cCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCc
Confidence 3555554 7999999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred HHHhCCCCccccccCChhhHHHHhhccC-ccc---------c---cccCCCceEEEEehhhHHhcHhhhhccCccEEEEC
Q 000994 505 ISRFCPDLKTLPYWGGLQERMVLRKNIN-PKR---------L---YRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLD 571 (1196)
Q Consensus 505 i~k~~p~l~v~~y~G~~~~r~~l~~~~~-~~~---------~---~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlD 571 (1196)
+..|.|++.+++|.|+.+.|..++...- ..+ . ......++|.+++|+.+..+...+..+.|..+|+|
T Consensus 364 ~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livd 443 (696)
T KOG0383|consen 364 FELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVD 443 (696)
T ss_pred hhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEee
Confidence 9999999999999999999988776421 111 1 12346789999999999999999999999999999
Q ss_pred CCccccCcccHHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcchHHH
Q 000994 572 EAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQL 651 (1196)
Q Consensus 572 EAH~iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~ql 651 (1196)
|+|++||..|.+.+.+..++..++++|||||.||++.||+++|+||.|+.|++...|.+.|.... .++++
T Consensus 444 e~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~----------~~~~~ 513 (696)
T KOG0383|consen 444 EAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDIS----------CEEQI 513 (696)
T ss_pred chhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhh----------HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876422 46789
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHHHH
Q 000994 652 NRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRK 731 (1196)
Q Consensus 652 ~rL~~ILkpfmLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqLRK 731 (1196)
..||.+|.|+||||.|.||...+|.|+|.++.+.||+.|+.+|..+...- ...+.. .....+++|++|+|||
T Consensus 514 ~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n-~~~l~~-------~~~~~s~~n~~mel~K 585 (696)
T KOG0383|consen 514 KKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRN-WQGLLA-------GVHQYSLLNIVMELRK 585 (696)
T ss_pred HhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCC-hHHHhh-------cchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986541 112221 3345679999999999
Q ss_pred hhCCchhhc
Q 000994 732 VCNHPELFE 740 (1196)
Q Consensus 732 vCnHP~Lfe 740 (1196)
+||||++|.
T Consensus 586 ~~~hpy~~~ 594 (696)
T KOG0383|consen 586 QCNHPYLSP 594 (696)
T ss_pred hhcCcccCc
Confidence 999999974
No 19
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=9.4e-52 Score=521.04 Aligned_cols=413 Identities=22% Similarity=0.262 Sum_probs=299.6
Q ss_pred hccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCc
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLK 513 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~ 513 (1196)
...|.|||+..+.++... ...+.|||||||||||++|++++..+...+ ..+|+|||||.++++||..|+.+++ ++.
T Consensus 150 ~~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~sL~~QW~~El~~kF-~l~ 225 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPETLQHQWLVEMLRRF-NLR 225 (956)
T ss_pred CCCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCHHHHHHHHHHHHHHh-CCC
Confidence 457999999999887654 456789999999999999999998877554 3479999999999999999997655 344
Q ss_pred cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcH---hhhhccCccEEEECCCccccCc---ccHHHHHH
Q 000994 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE---KYFRRVKWQYMVLDEAQAIKSS---NSIRWKTL 587 (1196)
Q Consensus 514 v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~---~~l~~~~w~~VIlDEAH~iKn~---~S~~~kal 587 (1196)
+.++.+...... .. ... .....++++|+||+.+..+. ..+....|++|||||||++++. .|..++.+
T Consensus 226 ~~i~~~~~~~~~---~~-~~~---~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 226 FSLFDEERYAEA---QH-DAD---NPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred eEEEcCcchhhh---cc-ccc---CccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 445544321110 00 000 11134689999999998864 4466779999999999999953 56678888
Q ss_pred Hhc--cccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhh--hccccc---ccCCCcchHHHHHHHHHHH-
Q 000994 588 LSF--NCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSK--GIESHA---EHGGTLNEHQLNRLHAILK- 659 (1196)
Q Consensus 588 ~~l--~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~--~ie~~a---~~~~~~~~~ql~rL~~ILk- 659 (1196)
..+ +++++++|||||++|+..|+|++|+||+|+.|++...|.+.... ++.... ..+..+.......|..+|+
T Consensus 299 ~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~ 378 (956)
T PRK04914 299 EQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGE 378 (956)
T ss_pred HHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcc
Confidence 777 67899999999999999999999999999999999999775542 221000 0111112222233333222
Q ss_pred -----------------------------------HHHHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhh
Q 000994 660 -----------------------------------PFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLA 704 (1196)
Q Consensus 660 -----------------------------------pfmLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~ 704 (1196)
++|+|+++.+|. .+|.+....+.++++.. |.......
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~----y~~~~~~~--- 450 (956)
T PRK04914 379 QDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ----YQTAIKVS--- 450 (956)
T ss_pred cchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH----HHHHHHHh---
Confidence 445566666654 46666666666666542 22211000
Q ss_pred hhhccccCCcchHhHHHHHHHHHHHHHhhCCchhhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchh
Q 000994 705 GLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKI 784 (1196)
Q Consensus 705 ~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnHP~Lfer~~~~s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~l 784 (1196)
....+++ |.+|+-+.
T Consensus 451 --------------------~~~~~~~-~l~pe~~~-------------------------------------------- 465 (956)
T PRK04914 451 --------------------LEARARD-MLYPEQIY-------------------------------------------- 465 (956)
T ss_pred --------------------HHHHHHh-hcCHHHHH--------------------------------------------
Confidence 0000000 11110000
Q ss_pred hHHHhhhhhhhhhhcccCCchhHHHHhHhhccchhhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhH
Q 000994 785 VHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFM 864 (1196)
Q Consensus 785 l~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~ 864 (1196)
+.
T Consensus 466 --------------------------------------~~---------------------------------------- 467 (956)
T PRK04914 466 --------------------------------------QE---------------------------------------- 467 (956)
T ss_pred --------------------------------------HH----------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhhhhhhhchhhhHHhhhhccccccCCCCCcchhhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHH
Q 000994 865 ERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQE 944 (1196)
Q Consensus 865 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 944 (1196)
+. .
T Consensus 468 ---------------------~~-----~--------------------------------------------------- 470 (956)
T PRK04914 468 ---------------------FE-----D--------------------------------------------------- 470 (956)
T ss_pred ---------------------Hh-----h---------------------------------------------------
Confidence 00 0
Q ss_pred HHHHhHhhhcccccccCCCCCCCcccccCCcchhcccccccCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCC
Q 000994 945 RLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELP 1024 (1196)
Q Consensus 945 ~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1024 (1196)
T Consensus 471 -------------------------------------------------------------------------------- 470 (956)
T PRK04914 471 -------------------------------------------------------------------------------- 470 (956)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchhhhhhhccCCCCCCCCCCcccccccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHH-HhCCCcEEEEe
Q 000994 1025 VAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYM-NYRKYRYLRLD 1103 (1196)
Q Consensus 1025 ~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L-~~rg~~y~rLD 1103 (1196)
...-+..++|+..|.++|..+. +.|||||+++..+.+.|+++| ...|++++.++
T Consensus 471 -----------------------~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ih 525 (956)
T PRK04914 471 -----------------------NATWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALREREGIRAAVFH 525 (956)
T ss_pred -----------------------hhhccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEE
Confidence 0000123679999999988764 789999999999999999999 56799999999
Q ss_pred CCCCHHHHHHHHHHHccCC-CceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeC
Q 000994 1104 GSSTIMDRRDMVRDFQHRS-DIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCH 1182 (1196)
Q Consensus 1104 GStk~~dR~~~V~dFq~~~-di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~ 1182 (1196)
|+++..+|..+++.|++.+ ++.| |++|.+||.||||+.|++||+||.+|||....|++||+||+||++.|.||.++++
T Consensus 526 G~~s~~eR~~~~~~F~~~~~~~~V-LIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 526 EGMSIIERDRAAAYFADEEDGAQV-LLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred CCCCHHHHHHHHHHHhcCCCCccE-EEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCC
Confidence 9999999999999999854 5666 6677999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhc
Q 000994 1183 LFIFSMIGN 1191 (1196)
Q Consensus 1183 gTIEErIl~ 1191 (1196)
||+||+|+.
T Consensus 605 ~t~~e~i~~ 613 (956)
T PRK04914 605 GTAQERLFR 613 (956)
T ss_pred CCHHHHHHH
Confidence 999999985
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=6.2e-45 Score=413.27 Aligned_cols=281 Identities=35% Similarity=0.653 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHhh---------hcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCC--cEEEEeCCccHHHHHHHHHHh
Q 000994 440 YQLKGLQWLVNCY---------EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWG--PFLVVAPASVLNNWADEISRF 508 (1196)
Q Consensus 440 yQl~gl~wL~~~~---------~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~g--p~LIV~P~sll~nW~~Ei~k~ 508 (1196)
||++||+||+.++ ....|||||||||+|||+++|+++.++.......+ ++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 77789999999999999999999998877655433 699999999999999999999
Q ss_pred C-C-CCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHH-----hcHhhhhccCccEEEECCCccccCccc
Q 000994 509 C-P-DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLV-----ADEKYFRRVKWQYMVLDEAQAIKSSNS 581 (1196)
Q Consensus 509 ~-p-~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~-----~d~~~l~~~~w~~VIlDEAH~iKn~~S 581 (1196)
+ | ++++++|.|....+... ......++|+|+||+.+. .....+..++|++||+||+|.+||..|
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~---------~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s 151 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRLS---------KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDS 151 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHTT---------SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTS
T ss_pred ccccccccccccccccccccc---------ccccccceeeeccccccccccccccccccccccceeEEEecccccccccc
Confidence 9 4 78999998876222211 112367889999999999 677888889999999999999999999
Q ss_pred HHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHH
Q 000994 582 IRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPF 661 (1196)
Q Consensus 582 ~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~ql~rL~~ILkpf 661 (1196)
..++++..+.++++|+|||||++|++.|+|++++||.|+.+.+...|.++|..+. .........+|..+|++|
T Consensus 152 ~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~-------~~~~~~~~~~L~~~l~~~ 224 (299)
T PF00176_consen 152 KRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPD-------KENSYENIERLRELLSEF 224 (299)
T ss_dssp HHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHH-------HTHHHHHHHHHHHHHCCC
T ss_pred cccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhc-------cccccccccccccccchh
Confidence 9999999999999999999999999999999999999999999999999987651 112356689999999999
Q ss_pred HHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHHHHhhCCchhh
Q 000994 662 MLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELF 739 (1196)
Q Consensus 662 mLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnHP~Lf 739 (1196)
++||+++++..+||++.+.++.|+||+.|+.+|+.+....... +.... .........++..+++|||+||||.|+
T Consensus 225 ~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 225 MIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEAREN--LKQSS-RKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp EECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGC--CTT-T---TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHH--HHhhc-ccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 9999999998899999999999999999999999887765321 11111 233567789999999999999999873
No 21
>PF13892 DBINO: DNA-binding domain
Probab=100.00 E-value=1.9e-43 Score=344.69 Aligned_cols=137 Identities=50% Similarity=0.765 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 000994 192 EEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVD 271 (1196)
Q Consensus 192 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~r~~re~~~~wk~~e 271 (1196)
++++++++||.+||||||||+||+++++++++++||||+|.+|++|+|+|+++++|.+||+++|||||+|||++|||++|
T Consensus 2 ~~~~~~~kiW~~i~rkdi~K~~r~~~~~~~~~~~~~kk~a~~c~re~rr~~~rs~k~~Kd~~~Rakrl~rEm~~fwkk~e 81 (139)
T PF13892_consen 2 QYDAKRRKIWKDIARKDIPKVHRIKQQNHQNRQSNAKKIAQLCAREARRKQSRSQKNMKDTQLRAKRLMREMLSFWKKNE 81 (139)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhccCCCCCC
Q 000994 272 KEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSSQPS 328 (1196)
Q Consensus 272 ~~~~~~~~~~eke~~~~~k~~~e~~e~~rq~rkl~fli~qtely~hf~~~k~~~~~~ 328 (1196)
|++++.++++|||++|+.|+++|.+|++||++||||||+|||||||||++|+++++.
T Consensus 82 ke~~~~~k~~eKE~~e~~k~~~E~~e~~rq~~rl~fLl~QTElfsHF~~~k~~~~~~ 138 (139)
T PF13892_consen 82 KEERELRKKAEKEALEQKKKEEEKREAKRQQRRLNFLLTQTELFSHFMQNKAKTSEA 138 (139)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccC
Confidence 999999999999999999999999999999999999999999999999999987754
No 22
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=3.2e-42 Score=421.59 Aligned_cols=268 Identities=28% Similarity=0.406 Sum_probs=209.8
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHh---------------cccCCcEEEEeCCccHHHHHHHHHHhCCCC-ccccc
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEE---------------KNIWGPFLVVAPASVLNNWADEISRFCPDL-KTLPY 517 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~---------------~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l-~v~~y 517 (1196)
.|..+++|||||+|||...+++....... ....|.+|||||.+++.||-.||.+|++.+ +|+.|
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEE
Confidence 34457999999999999998876553211 111378999999999999999999999876 99999
Q ss_pred cCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcH----------------------hhhhccCccEEEECCCcc
Q 000994 518 WGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE----------------------KYFRRVKWQYMVLDEAQA 575 (1196)
Q Consensus 518 ~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~----------------------~~l~~~~w~~VIlDEAH~ 575 (1196)
.|-.+.- ...+. ...+||||+|||++++.+. ..|..+.|++|||||||.
T Consensus 453 ~Girk~~-----~~~~~----el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQM 523 (1394)
T KOG0298|consen 453 FGIRKTF-----WLSPF----ELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQM 523 (1394)
T ss_pred echhhhc-----ccCch----hhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHh
Confidence 9942211 11222 3378999999999997752 235567899999999999
Q ss_pred ccCcccHHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHH
Q 000994 576 IKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLH 655 (1196)
Q Consensus 576 iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~ql~rL~ 655 (1196)
+.+.+|..++++..+++.|+|++||||||+ +.+|+.||.||.-.+|+....|.+...+++...+. -.+++
T Consensus 524 vesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~ra~---------~~~~~ 593 (1394)
T KOG0298|consen 524 VESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLRAK---------CEPLL 593 (1394)
T ss_pred hcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHhh---------hhhHH
Confidence 999999999999999999999999999999 99999999999999999999999988877765422 35689
Q ss_pred HHHHHHHHHhhhhhhhcc--CCCceEEEEEcCCCHHHHHHHHHHHH----HHhhhh------hhcccc--CCcchHhHHH
Q 000994 656 AILKPFMLRRVKKDVISE--LTTKTEVMVHCKLSSRQQAFYQAIKN----KISLAG------LFDNSR--GHLNEKKILN 721 (1196)
Q Consensus 656 ~ILkpfmLRR~KkdV~~e--LP~K~E~~V~c~LT~~Qr~lY~~l~~----~is~~~------ll~~~~--~~~~~~~~~~ 721 (1196)
.+++..+.|+.|.+|+.+ +||..+.+....+++.|-.+|+..-- ...... .+.++. .....-....
T Consensus 594 dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~ 673 (1394)
T KOG0298|consen 594 DLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAI 673 (1394)
T ss_pred HHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHH
Confidence 999999999999999887 58888998999999998887765422 211111 111111 1222344567
Q ss_pred HHHHHHHHHHhhCCchhhc
Q 000994 722 LMNIVIQLRKVCNHPELFE 740 (1196)
Q Consensus 722 lmnlvmqLRKvCnHP~Lfe 740 (1196)
+.+.+.+||++|+||..+.
T Consensus 674 i~~~l~rLRq~Cchplv~~ 692 (1394)
T KOG0298|consen 674 ILKWLLRLRQACCHPLVGN 692 (1394)
T ss_pred HHHHHHHHHHhhccccccc
Confidence 8899999999999998764
No 23
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.1e-36 Score=370.84 Aligned_cols=133 Identities=16% Similarity=0.236 Sum_probs=115.2
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
..|+.++..|+......|+|+|||++.+..++.+...| +. ..|+|+++..+|..++++|+..+.+.++++| ++|
T Consensus 479 p~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVg 552 (732)
T TIGR00603 479 PNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVG 552 (732)
T ss_pred hHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccEEEEe-ccc
Confidence 35888888888877678999999999998877777766 43 4489999999999999999976777776665 999
Q ss_pred ccccCcccCCEEEEeCCCC-CcchHHHHHHhhhccCCCCc-----EEEEEeeeCCcHHHHHhccC
Q 000994 1135 GLGINLTAADTVIFYESDW-NPTLDLQAMDRAHRLGQTKD-----VSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdW-NPt~d~QAmdRahRiGQtK~-----VtVYRLIt~gTIEErIl~~~ 1193 (1196)
+.||||+.|++||++++++ |+....|++||+.|.|..+. ..+|.||+++|.|+......
T Consensus 553 deGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~R 617 (732)
T TIGR00603 553 DTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKR 617 (732)
T ss_pred ccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHH
Confidence 9999999999999999987 99999999999999998654 78999999999999875443
No 24
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.7e-31 Score=338.02 Aligned_cols=133 Identities=19% Similarity=0.258 Sum_probs=118.4
Q ss_pred cccHHHHHHHHHHHHh--hCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCC--------CCHHHHHHHHHHHccCCC
Q 000994 1054 DSGKLQTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGS--------STIMDRRDMVRDFQHRSD 1123 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk--~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGS--------tk~~dR~~~V~dFq~~~d 1123 (1196)
.++|+..|.++|.+.. ..+.|||||+++.++.+.|.++|...|++++++.|+ ++..+|..++.+|.+ ++
T Consensus 345 ~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-g~ 423 (773)
T PRK13766 345 EHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA-GE 423 (773)
T ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHc-CC
Confidence 3689999999999987 568999999999999999999999999999999997 788899999999987 45
Q ss_pred ceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhc
Q 000994 1124 IFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGN 1191 (1196)
Q Consensus 1124 i~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~ 1191 (1196)
+.| |++|.+++.|+|++.+|+||+|||+|||....|+.||++|.| ++.||.|+++||+||.++.
T Consensus 424 ~~v-LvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~---~~~v~~l~~~~t~ee~~y~ 487 (773)
T PRK13766 424 FNV-LVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE---EGRVVVLIAKGTRDEAYYW 487 (773)
T ss_pred CCE-EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC---CCEEEEEEeCCChHHHHHH
Confidence 655 778899999999999999999999999999999666665554 5889999999999998774
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.93 E-value=6.9e-24 Score=258.39 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=112.3
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
..+...+..++..+...|+++|||+..++..+.|.+.|...|++...++|+++.++|..+++.|.. +...|++.|++..
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~-~~~~vLvaT~~~l 405 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG-GKGIIIVASYGVF 405 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-CCCeEEEEEccee
Confidence 345556666667777778999999999999999999999999999999999999999999999975 5666777777999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCC-cEEEEEeeeCC
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK-DVSSWLKLCHL 1183 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK-~VtVYRLIt~g 1183 (1196)
|.|+++...|+||+++|.-+.....|++||++|.|..| .++||.++-.-
T Consensus 406 ~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 406 STGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred ccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 99999999999999999999999999999999999866 68999888543
No 26
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=3.9e-22 Score=228.87 Aligned_cols=131 Identities=19% Similarity=0.300 Sum_probs=116.3
Q ss_pred ccccHHHHHHHHHHHHh--hCCCeEEEEecchHHHHHHHHHHHhCCCcEE-EEeC--------CCCHHHHHHHHHHHccC
Q 000994 1053 TDSGKLQTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNYRKYRYL-RLDG--------SSTIMDRRDMVRDFQHR 1121 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk--~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~-rLDG--------Stk~~dR~~~V~dFq~~ 1121 (1196)
.+.+||..|.++|++.. ..+.|||||+||..+.+.|-++|...+.+.. |+-| .+++.+..+++++|+.
T Consensus 345 v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~- 423 (542)
T COG1111 345 VEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK- 423 (542)
T ss_pred CCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc-
Confidence 34789999999999986 5578999999999999999999999988775 7877 3778899999999986
Q ss_pred CCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHH
Q 000994 1122 SDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSM 1188 (1196)
Q Consensus 1122 ~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEEr 1188 (1196)
+++.| |++|..|-+||++...|-||||||.-.|-.-.|+|||.+| .+.=.||-|+++||-+|-
T Consensus 424 Ge~nV-LVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdea 486 (542)
T COG1111 424 GEYNV-LVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEA 486 (542)
T ss_pred CCceE-EEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHH
Confidence 77777 7899999999999999999999999999999998888877 477789999999998873
No 27
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.92 E-value=3.1e-23 Score=248.32 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=118.8
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
..|+..+..++.... .+.+++||++.....+.+...|...++ ...++|+++.++|..+++.|.... + ..|.+++.+
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~-~~lv~~~vl 342 (442)
T COG1061 267 ERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-I-KVLVTVKVL 342 (442)
T ss_pred HHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-C-CEEEEeeec
Confidence 567788888888776 799999999999999999999999888 899999999999999999998744 4 447777999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCC-CCc--EEEEEeeeCCcHHHHHhccC
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQ-TKD--VSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQ-tK~--VtVYRLIt~gTIEErIl~~~ 1193 (1196)
++|+++..|+++|+..|.=+|....|++||+.|.-. +.. +.+|-++..++.|+.+....
T Consensus 343 ~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 404 (442)
T COG1061 343 DEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRR 404 (442)
T ss_pred cceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhh
Confidence 999999999999999999999999999999999544 443 88899999999888776543
No 28
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=5.2e-24 Score=240.39 Aligned_cols=127 Identities=17% Similarity=0.248 Sum_probs=106.2
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
..|+.+..-|++.....|+|+||||.-.- .|.+|-...|-.| |.|.|+..+|..++..||.++.+..++|| +.|
T Consensus 526 P~KFraCqfLI~~HE~RgDKiIVFsDnvf---ALk~YAikl~Kpf--IYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVg 599 (776)
T KOG1123|consen 526 PNKFRACQFLIKFHERRGDKIIVFSDNVF---ALKEYAIKLGKPF--IYGPTSQNERMKILQNFQTNPKVNTIFLS-KVG 599 (776)
T ss_pred cchhHHHHHHHHHHHhcCCeEEEEeccHH---HHHHHHHHcCCce--EECCCchhHHHHHHHhcccCCccceEEEe-ecc
Confidence 45777777788888888999999997544 3455655555544 78999999999999999999999999999 999
Q ss_pred ccccCcccCCEEEEeCCCC-CcchHHHHHHhhhccCCC----CcEEEEEeeeCCcHHH
Q 000994 1135 GLGINLTAADTVIFYESDW-NPTLDLQAMDRAHRLGQT----KDVSSWLKLCHLFIFS 1187 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdW-NPt~d~QAmdRahRiGQt----K~VtVYRLIt~gTIEE 1187 (1196)
...|+|..|+.+|-+.+.. .-..++|+.||+-|--.. =.++.|-||+++|.|=
T Consensus 600 DtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 600 DTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred CccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHH
Confidence 9999999999999999987 668899999999987522 2488999999999884
No 29
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=1.4e-17 Score=201.85 Aligned_cols=105 Identities=21% Similarity=0.215 Sum_probs=96.5
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeC
Q 000994 1071 ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYE 1150 (1196)
Q Consensus 1071 ~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyD 1150 (1196)
.|.++|||+...+..+.+.++|...|+....+.|+++.++|..++++|.. +.+.| |++|.+.|.|||+...++||+||
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~-g~~~v-LVaT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR-DEIQV-VVATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc-CCCcE-EEEechhhccCCcccceEEEEeC
Confidence 36678999999999999999999999999999999999999999999985 67766 67789999999999999999999
Q ss_pred CCCCcchHHHHHHhhhccCCCCcEEEE
Q 000994 1151 SDWNPTLDLQAMDRAHRLGQTKDVSSW 1177 (1196)
Q Consensus 1151 sdWNPt~d~QAmdRahRiGQtK~VtVY 1177 (1196)
++.++....|.+||++|.|+.....+|
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999998766554
No 30
>PTZ00110 helicase; Provisional
Probab=99.79 E-value=1.4e-17 Score=204.73 Aligned_cols=126 Identities=17% Similarity=0.283 Sum_probs=112.2
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
..|...|..+|..+...+.++|||++-.+..+.|...|...|+..+.+.|.++.++|..++++|.+ +.+.| |++|.+.
T Consensus 360 ~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~-G~~~I-LVaTdv~ 437 (545)
T PTZ00110 360 HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT-GKSPI-MIATDVA 437 (545)
T ss_pred hhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc-CCCcE-EEEcchh
Confidence 456777888888877678999999999999999999999999999999999999999999999986 55555 7899999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
+.|||+...++||.||.++++....|++||++|.|.+- ++|-|++.+-
T Consensus 438 ~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G--~ai~~~~~~~ 485 (545)
T PTZ00110 438 SRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKG--ASYTFLTPDK 485 (545)
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc--eEEEEECcch
Confidence 99999999999999999999999999999999999865 4566777663
No 31
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.77 E-value=6e-17 Score=196.22 Aligned_cols=121 Identities=22% Similarity=0.341 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcccc
Q 000994 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1196)
Q Consensus 1057 KL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGl 1136 (1196)
|+..|..+|... .+.++|||+......+.+.++|...++....++|.++..+|+.++++|.+ +.+.| |++|.+.+.
T Consensus 229 k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~-g~~~v-LVaTdv~~r 304 (460)
T PRK11776 229 RLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN-RSCSV-LVATDVAAR 304 (460)
T ss_pred HHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCcE-EEEeccccc
Confidence 666777777543 35689999999999999999999999999999999999999999999985 56666 677899999
Q ss_pred ccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
|||+...++||.||.+.++....|++||++|.|++ -.+|.|++.+
T Consensus 305 GiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~--G~ai~l~~~~ 349 (460)
T PRK11776 305 GLDIKALEAVINYELARDPEVHVHRIGRTGRAGSK--GLALSLVAPE 349 (460)
T ss_pred ccchhcCCeEEEecCCCCHhHhhhhcccccCCCCc--ceEEEEEchh
Confidence 99999999999999999999999999999999976 4466677664
No 32
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.77 E-value=9.2e-17 Score=195.31 Aligned_cols=123 Identities=22% Similarity=0.261 Sum_probs=104.4
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
+.|...|..+|.. ..+.|+|||++-....+.+.++|...|+....+.|.++.++|+.++++|.. +++.| |++|.++
T Consensus 320 ~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~-G~~~v-LvaT~~l 395 (475)
T PRK01297 320 SDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE-GKIRV-LVATDVA 395 (475)
T ss_pred hhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC-CCCcE-EEEcccc
Confidence 3455555555543 234699999999999999999999999999999999999999999999976 56666 6788999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
+.|||+...|+||+||.++++....|++||++|.|+.- .++-|++.+
T Consensus 396 ~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g--~~i~~~~~~ 442 (475)
T PRK01297 396 GRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASG--VSISFAGED 442 (475)
T ss_pred ccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCc--eEEEEecHH
Confidence 99999999999999999999999999999999999864 444556544
No 33
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.77 E-value=4.3e-17 Score=195.42 Aligned_cols=122 Identities=19% Similarity=0.249 Sum_probs=106.5
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
.|+..|..++... .+.++|||+......+.+.++|...|++...+.|.++.++|..++++|+. +++.| |++|.+.+
T Consensus 241 ~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~-g~~~v-LVaTdv~~ 316 (423)
T PRK04837 241 EKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR-GDLDI-LVATDVAA 316 (423)
T ss_pred HHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc-CCCcE-EEEechhh
Confidence 4666666666542 36799999999999999999999999999999999999999999999976 66666 77889999
Q ss_pred cccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
.|||+...++||.||+++++....|++||++|.|+.- +++-|++.+
T Consensus 317 rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G--~ai~~~~~~ 362 (423)
T PRK04837 317 RGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASG--HSISLACEE 362 (423)
T ss_pred cCCCccccCEEEEeCCCCchhheEeccccccCCCCCe--eEEEEeCHH
Confidence 9999999999999999999999999999999999764 456677765
No 34
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.77 E-value=9.3e-17 Score=193.16 Aligned_cols=117 Identities=21% Similarity=0.317 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
.|+..|..++.. ..+.++|||+......+.+.+.|...++....++|.++..+|..++++|.. +.+.| |++|.+.+
T Consensus 231 ~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~-G~~~v-LVaTd~~~ 306 (434)
T PRK11192 231 HKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD-GRVNV-LVATDVAA 306 (434)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC-CCCcE-EEEccccc
Confidence 355555555542 235699999999999999999999999999999999999999999999975 66665 77789999
Q ss_pred cccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEE
Q 000994 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtV 1176 (1196)
.|||+...++||+||+++++....|++||++|.|..-.+.+
T Consensus 307 ~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 307 RGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred cCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 99999999999999999999999999999999998765544
No 35
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.75 E-value=1.9e-16 Score=197.45 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=94.0
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCC
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1196)
|.++|||+...+..+.+.++|...|++...++|+++.++|..++++|.. +++. +|++|.+.|.|||+...+.||+||+
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~-g~~~-vlVaT~a~~~GID~p~v~~VI~~~~ 301 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY-DDVK-VMVATNAFGMGIDKPNVRFVIHYDM 301 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc-CCCc-EEEEechhhccCcCCCCCEEEEcCC
Confidence 6789999999999999999999999999999999999999999999986 4554 4788899999999999999999999
Q ss_pred CCCcchHHHHHHhhhccCCCCcEE
Q 000994 1152 DWNPTLDLQAMDRAHRLGQTKDVS 1175 (1196)
Q Consensus 1152 dWNPt~d~QAmdRahRiGQtK~Vt 1175 (1196)
++|+....|.+|||+|.|+...+.
T Consensus 302 p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 302 PGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCCHHHHhhhhccccCCCCCceEE
Confidence 999999999999999999765544
No 36
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.75 E-value=1.8e-16 Score=191.64 Aligned_cols=108 Identities=23% Similarity=0.316 Sum_probs=97.3
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCC
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1196)
..++|||+.-....+.+.+.|...++....++|.++.++|..++++|.. +.+.| |++|.+.+.|||+...++||.||+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~i-LVaTdv~~rGiDip~v~~VI~~~~ 322 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS-GDIRV-LVATDIAARGLDIEELPHVVNYEL 322 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcE-EEEccHHhcCCCcccCCEEEEeCC
Confidence 4699999999999999999999999999999999999999999999986 56665 678899999999999999999999
Q ss_pred CCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1152 DWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1152 dWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
+.++....|++||++|.|++-.+ +-|++..
T Consensus 323 P~~~~~yvqR~GRaGR~g~~G~a--i~l~~~~ 352 (456)
T PRK10590 323 PNVPEDYVHRIGRTGRAAATGEA--LSLVCVD 352 (456)
T ss_pred CCCHHHhhhhccccccCCCCeeE--EEEecHH
Confidence 99999999999999999987644 4456554
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.75 E-value=2.2e-16 Score=194.98 Aligned_cols=121 Identities=21% Similarity=0.358 Sum_probs=104.6
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
.|+..|..+|.. ..+.++|||+......+.|.++|...++....++|.++..+|..++++|.+ .++.| |++|.+.+
T Consensus 243 ~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~-G~~~V-LVaTdv~a 318 (572)
T PRK04537 243 EKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK-GQLEI-LVATDVAA 318 (572)
T ss_pred HHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEEehhhh
Confidence 355556565543 347899999999999999999999999999999999999999999999976 56666 77889999
Q ss_pred cccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeC
Q 000994 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCH 1182 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~ 1182 (1196)
.|||+...++||+||.+|++....|++||+.|.|..-. ++-|++.
T Consensus 319 rGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~--ai~~~~~ 363 (572)
T PRK04537 319 RGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGD--AISFACE 363 (572)
T ss_pred cCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCce--EEEEecH
Confidence 99999999999999999999999999999999998654 3445654
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.75 E-value=3.4e-16 Score=195.13 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=94.5
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeC
Q 000994 1071 ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYE 1150 (1196)
Q Consensus 1071 ~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyD 1150 (1196)
.|.++|||+...+..+.+.+.|...|++...+.|.++.++|..++++|.. +++.| |++|.+.|.|||+...+.||+||
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~-g~~~V-LVaT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR-DDLQI-VVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC-CCCCE-EEEechhhccCCCCCcCEEEEeC
Confidence 46799999999999999999999999999999999999999999999986 55665 67889999999999999999999
Q ss_pred CCCCcchHHHHHHhhhccCCCCcEE
Q 000994 1151 SDWNPTLDLQAMDRAHRLGQTKDVS 1175 (1196)
Q Consensus 1151 sdWNPt~d~QAmdRahRiGQtK~Vt 1175 (1196)
++.++....|.+|||+|.|....+.
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCceEE
Confidence 9999999999999999999765533
No 39
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.74 E-value=2.2e-16 Score=193.54 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNY-RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1057 KL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~-rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
|...|..+|........++|||+......+.+.+.|.. .|++...+.|.++.++|..++++|.. +++.| |++|.+.+
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~-G~~~I-LVaTdvl~ 429 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV-GEVPV-IVATGVLG 429 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC-CCCCE-EEEecHhh
Confidence 44455555555444456899999999999999999975 69999999999999999999999986 66766 78889999
Q ss_pred cccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
.|||+..+++||.||++.++....|++||++|.|.+ -+++-|++.+.
T Consensus 430 rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~--G~ai~f~~~~~ 476 (518)
T PLN00206 430 RGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK--GTAIVFVNEED 476 (518)
T ss_pred ccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC--eEEEEEEchhH
Confidence 999999999999999999999999999999999975 45556777654
No 40
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.74 E-value=1.4e-15 Score=184.61 Aligned_cols=170 Identities=20% Similarity=0.214 Sum_probs=118.1
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc-cHHHHHHHHHHhCCCCc
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS-VLNNWADEISRFCPDLK 513 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s-ll~nW~~Ei~k~~p~l~ 513 (1196)
..||+||.+-+.-.+ |.|.|+|-.+|+|||+.|+-++....+..+. +.+++.+|.. ++.|-..++..++-...
T Consensus 61 ~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred ccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 479999999885433 6799999999999999998888877777665 8999999964 56666677887774455
Q ss_pred cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhcc---CccEEEECCCccccCcc--cHHHHHHH
Q 000994 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRV---KWQYMVLDEAQAIKSSN--SIRWKTLL 588 (1196)
Q Consensus 514 v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~---~w~~VIlDEAH~iKn~~--S~~~kal~ 588 (1196)
+....|+...+......| ...+|++.|.+.+..+...-..- .|-++|+||||+-.... +...+.++
T Consensus 135 ~T~~l~~~~~~~~r~~i~---------~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l 205 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIV---------ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYL 205 (746)
T ss_pred ceeeccCccCCCchhhhh---------cccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHH
Confidence 555555433332222222 35679999999998875543333 48899999999874422 23333444
Q ss_pred hc--cccceEEeecCCCCCChHHHHHHHHhhCCC
Q 000994 589 SF--NCRNRLLLTGTPIQNNMAELWALLHFIMPT 620 (1196)
Q Consensus 589 ~l--~~~~RllLTGTPiqN~l~EL~sLL~FL~P~ 620 (1196)
.. .....|+|||||= +++....+.+.=|...
T Consensus 206 ~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as 238 (746)
T KOG0354|consen 206 DLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS 238 (746)
T ss_pred HhhhccccEEEEecCCC-ccHHHHHHHHHhhhee
Confidence 43 2336789999997 7777766666555444
No 41
>PTZ00424 helicase 45; Provisional
Probab=99.73 E-value=5.2e-16 Score=184.57 Aligned_cols=111 Identities=19% Similarity=0.268 Sum_probs=99.1
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCC
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1196)
..++|||+......+.+.++|...++....++|.++.++|..++++|.+ +.+.| |++|.+.+.|||+...++||+||+
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~-g~~~v-LvaT~~l~~GiDip~v~~VI~~~~ 344 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS-GSTRV-LITTDLLARGIDVQQVSLVINYDL 344 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCE-EEEcccccCCcCcccCCEEEEECC
Confidence 4589999999999999999999999999999999999999999999986 66766 688899999999999999999999
Q ss_pred CCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHH
Q 000994 1152 DWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIF 1186 (1196)
Q Consensus 1152 dWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIE 1186 (1196)
+.++....|++||++|.|.. -.++.|++..-.+
T Consensus 345 p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~~~ 377 (401)
T PTZ00424 345 PASPENYIHRIGRSGRFGRK--GVAINFVTPDDIE 377 (401)
T ss_pred CCCHHHEeecccccccCCCC--ceEEEEEcHHHHH
Confidence 99999999999999999964 4566677766433
No 42
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.72 E-value=1.1e-15 Score=189.99 Aligned_cols=117 Identities=14% Similarity=0.231 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
-|+..|..+|... ...++|||+.-....+.+.++|..+|+....++|.++.++|..++++|.. +.+.| |++|.+.+
T Consensus 231 ~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~-G~~~I-LVATdv~a 306 (629)
T PRK11634 231 RKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD-GRLDI-LIATDVAA 306 (629)
T ss_pred hHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC-CCCCE-EEEcchHh
Confidence 3555666665432 24689999999999999999999999999999999999999999999986 55554 78999999
Q ss_pred cccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEE
Q 000994 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtV 1176 (1196)
.|||+...++||.||.+.++....|++||+.|.|.+-.+.+
T Consensus 307 rGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 99999999999999999999999999999999998654333
No 43
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.71 E-value=4.2e-15 Score=193.44 Aligned_cols=106 Identities=15% Similarity=0.265 Sum_probs=85.4
Q ss_pred CCeEEEEecchHHHHHHHHHHHhC------CC---cEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCccc
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYR------KY---RYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTA 1142 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~r------g~---~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTa 1142 (1196)
+.|+|||+.-....+.+.+.|... ++ ....++|+++ ++..++++|.+ +....+|+|+...+.|++...
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~-~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN-ERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC-CCCCeEEEEecccccCCCccc
Confidence 369999999888877777666432 22 3467999986 78899999976 444467889999999999999
Q ss_pred CCEEEEeCCCCCcchHHHHHHhhhccCC---CCcEEEEEee
Q 000994 1143 ADTVIFYESDWNPTLDLQAMDRAHRLGQ---TKDVSSWLKL 1180 (1196)
Q Consensus 1143 AdtVIfyDsdWNPt~d~QAmdRahRiGQ---tK~VtVYRLI 1180 (1196)
.++|||+.|.=+++.-.|++||+-|+.- +....||-++
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999999854 5555666543
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.70 E-value=2.8e-15 Score=187.65 Aligned_cols=155 Identities=17% Similarity=0.262 Sum_probs=107.4
Q ss_pred ccCcHHHHHHHHHHHHhhhcC--CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc-cHHHHHHHHHHhCC-
Q 000994 435 GSLKEYQLKGLQWLVNCYEQG--LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS-VLNNWADEISRFCP- 510 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~--~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s-ll~nW~~Ei~k~~p- 510 (1196)
..|.++|.+++..+....... .+.+|.-++|.|||+.++..+...... ...+||++|.. +..||.+++.++++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 478999999999988755332 367999999999999876554444332 24789999965 45789999999987
Q ss_pred -CCccccccCChhhH--HHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHH
Q 000994 511 -DLKTLPYWGGLQER--MVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTL 587 (1196)
Q Consensus 511 -~l~v~~y~G~~~~r--~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal 587 (1196)
++++..++|+.... ......+ ..+..+|+|+|+..+..... | -+..+||+||+|++.- .....+
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i-------~~g~~~IiVgT~~ll~~~~~-~--~~l~lvVIDEaH~fg~---~qr~~l 377 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETI-------ASGQIHLVVGTHALIQEKVE-F--KRLALVIIDEQHRFGV---EQRKKL 377 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHH-------hCCCCCEEEecHHHHhcccc-c--cccceEEEechhhccH---HHHHHH
Confidence 47888888864332 2121111 12567899999988764321 2 3568999999999732 222223
Q ss_pred Hh-cc---ccceEEeecCCCCC
Q 000994 588 LS-FN---CRNRLLLTGTPIQN 605 (1196)
Q Consensus 588 ~~-l~---~~~RllLTGTPiqN 605 (1196)
.. .. ..+.+++||||+..
T Consensus 378 ~~~~~~~~~~~~l~~SATp~pr 399 (630)
T TIGR00643 378 REKGQGGFTPHVLVMSATPIPR 399 (630)
T ss_pred HHhcccCCCCCEEEEeCCCCcH
Confidence 22 22 57789999999763
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.67 E-value=5.9e-15 Score=186.10 Aligned_cols=154 Identities=19% Similarity=0.216 Sum_probs=107.1
Q ss_pred ccCcHHHHHHHHHHHHhhhcC--CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc-cHHHHHHHHHHhCCC
Q 000994 435 GSLKEYQLKGLQWLVNCYEQG--LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS-VLNNWADEISRFCPD 511 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~--~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s-ll~nW~~Ei~k~~p~ 511 (1196)
..|.++|.+++.-+..-...+ .+.+|.-++|.|||+.++..+...... ...+||++|.. +..|+.+.+.++++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 479999999999888755433 367999999999999887655444332 14789999965 466899999999865
Q ss_pred --CccccccCChhh--HHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHH
Q 000994 512 --LKTLPYWGGLQE--RMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTL 587 (1196)
Q Consensus 512 --l~v~~y~G~~~~--r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal 587 (1196)
+++..++|+... +......+ ..+..+|+|+|+..+.... .| -+..+||+||+|++. ......+
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l-------~~g~~~IvVgT~~ll~~~v-~~--~~l~lvVIDE~Hrfg---~~qr~~l 403 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAI-------ASGEADIVIGTHALIQDDV-EF--HNLGLVIIDEQHRFG---VEQRLAL 403 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHH-------hCCCCCEEEchHHHhcccc-hh--cccceEEEechhhhh---HHHHHHH
Confidence 677888887542 22222211 1246889999998775432 12 256789999999983 2233334
Q ss_pred Hhc-cccceEEeecCCCC
Q 000994 588 LSF-NCRNRLLLTGTPIQ 604 (1196)
Q Consensus 588 ~~l-~~~~RllLTGTPiq 604 (1196)
... ...+.+++||||+.
T Consensus 404 ~~~~~~~~iL~~SATp~p 421 (681)
T PRK10917 404 REKGENPHVLVMTATPIP 421 (681)
T ss_pred HhcCCCCCEEEEeCCCCH
Confidence 333 35778999999974
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.67 E-value=7.9e-15 Score=185.46 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=94.9
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCC
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1196)
+...|||+...+..+.+.++|...|++...+.|+++.++|..+.++|.. +++.| |+.|.|.|.|||+...+.||+||.
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~-Gei~V-LVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK-DEINI-ICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc-CCCcE-EEEechhhcCCCccCCcEEEEcCC
Confidence 4478999999999999999999999999999999999999999999986 56766 677899999999999999999999
Q ss_pred CCCcchHHHHHHhhhccCCCCcEEEE
Q 000994 1152 DWNPTLDLQAMDRAHRLGQTKDVSSW 1177 (1196)
Q Consensus 1152 dWNPt~d~QAmdRahRiGQtK~VtVY 1177 (1196)
+-++....|.+|||+|.|+.-.+..|
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEE
Confidence 99999999999999999997665443
No 47
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.66 E-value=5.1e-16 Score=153.99 Aligned_cols=121 Identities=30% Similarity=0.456 Sum_probs=112.4
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
++|+..+..++.+....+.++|||+.....++.+.++|...+..+..+.|+++..+|..+++.|+... ..+|++|.++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~~ 88 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcChh
Confidence 37999999999998777899999999999999999999999999999999999999999999998743 5667799999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEE
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSW 1177 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVY 1177 (1196)
|.|+|+..|++||+++++||+....|++||++|.||+..|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999999888774
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.64 E-value=2.5e-14 Score=187.00 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=89.0
Q ss_pred CCeEEEEecchHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEe
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYR--KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFY 1149 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~r--g~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfy 1149 (1196)
|.+|+||+.-...++.+.+.|... ++++..+.|.++.++|..++.+|.+ +++.| |++|...+.||++..+++||++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~-Gk~~V-LVaTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNV-LVCTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh-cCCCE-EEECchhhcccccccCCEEEEe
Confidence 679999999999999999999876 7899999999999999999999976 56666 7788999999999999999999
Q ss_pred CCC-CCcchHHHHHHhhhccCCCCc
Q 000994 1150 ESD-WNPTLDLQAMDRAHRLGQTKD 1173 (1196)
Q Consensus 1150 Dsd-WNPt~d~QAmdRahRiGQtK~ 1173 (1196)
+++ +.-+...|..||++|.|++--
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g~ 911 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQAY 911 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCceE
Confidence 886 576778999999999988653
No 49
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.64 E-value=2.5e-14 Score=184.73 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=95.6
Q ss_pred HHHHHHhhCCCeEEEEecchHHHHHHHHHHHh------CCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcccc
Q 000994 1063 ILLKRLRAENHRVLLFAQMTKMLNILEDYMNY------RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1196)
Q Consensus 1063 ~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~------rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGl 1136 (1196)
..|.++...+.++|||+.-.+..+.+...|.. .+.....+.|+.+.++|..+.+.|.+ +.+.| |++|.+.+.
T Consensus 275 ~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~-G~i~v-LVaTs~Le~ 352 (876)
T PRK13767 275 ETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR-GELKV-VVSSTSLEL 352 (876)
T ss_pred HHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc-CCCeE-EEECChHHh
Confidence 34444445578999999999999888888875 34678889999999999999999986 56655 778899999
Q ss_pred ccCcccCCEEEEeCCCCCcchHHHHHHhhhcc-CCCCcEEEEE
Q 000994 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRL-GQTKDVSSWL 1178 (1196)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRahRi-GQtK~VtVYR 1178 (1196)
|||+...|.||.|+++.++....|++||++|- |++..-.|+-
T Consensus 353 GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 353 GIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred cCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999999999999999999865 6666666654
No 50
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.64 E-value=6e-14 Score=177.93 Aligned_cols=118 Identities=20% Similarity=0.173 Sum_probs=98.3
Q ss_pred HHhhCCCeEEEEecchHHHHHHHHHHHhC--------CCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcccccc
Q 000994 1067 RLRAENHRVLLFAQMTKMLNILEDYMNYR--------KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGI 1138 (1196)
Q Consensus 1067 ~Lk~~ghKVLIFSQ~t~mlDlLee~L~~r--------g~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGI 1138 (1196)
.+...+.++|||+.-.++.+.+..+|... +.+..-+.|+...++|+.+.++|.+ +.+.| |++|.+.++||
T Consensus 266 ~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~-G~i~v-LVaTd~lerGI 343 (742)
T TIGR03817 266 DLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD-GELLG-VATTNALELGV 343 (742)
T ss_pred HHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc-CCceE-EEECchHhccC
Confidence 33345889999999999999999888653 5667788999999999999999986 66665 78999999999
Q ss_pred CcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHH
Q 000994 1139 NLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSM 1188 (1196)
Q Consensus 1139 NLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEEr 1188 (1196)
|+...|+||+||.+=++....|++||++|.|+.-- ++-++..+..|..
T Consensus 344 DI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~ 391 (742)
T TIGR03817 344 DISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTY 391 (742)
T ss_pred CcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHH
Confidence 99999999999999999999999999999998643 4445554555543
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.64 E-value=2.5e-14 Score=183.24 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=92.6
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEE
Q 000994 1071 ENHRVLLFAQMTKMLNILEDYMNYR--KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1196)
Q Consensus 1071 ~ghKVLIFSQ~t~mlDlLee~L~~r--g~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1196)
.|.+|+||+.....++.+.+.|... ++++..++|.++.++|..++.+|.. +++.| |++|...+.|||+..||+||+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~-Gk~~I-LVaT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK-GEFQV-LVCTTIIETGIDIPNANTIII 736 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCE-EEECChhhcccccccCCEEEE
Confidence 4779999999999999999999874 7899999999999999999999986 55655 778899999999999999999
Q ss_pred eCCCC-CcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1149 YESDW-NPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1149 yDsdW-NPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
++.+. .-+...|.+||++|-|+ +=.+|-|+..+
T Consensus 737 ~~a~~~gls~l~Qr~GRvGR~g~--~g~aill~~~~ 770 (926)
T TIGR00580 737 ERADKFGLAQLYQLRGRVGRSKK--KAYAYLLYPHQ 770 (926)
T ss_pred ecCCCCCHHHHHHHhcCCCCCCC--CeEEEEEECCc
Confidence 99964 44567799999999886 45666666543
No 52
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.59 E-value=5.8e-15 Score=155.05 Aligned_cols=161 Identities=27% Similarity=0.396 Sum_probs=110.8
Q ss_pred ccCcHHHHHHHHHHHHhhhcC---CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCC
Q 000994 435 GSLKEYQLKGLQWLVNCYEQG---LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCP 510 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~---~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p 510 (1196)
-+|+|||.+++.-+.+.+... ..++|..++|.|||+.++.++..+.. ++|||||. +++.||.++|..+.+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 369999999999998877654 78999999999999999998888764 88999996 778899999988876
Q ss_pred CCccccccCC---hhhHHH-HhhccCcccccccCCCceEEEEehhhHHhcHhh-------------hhccCccEEEECCC
Q 000994 511 DLKTLPYWGG---LQERMV-LRKNINPKRLYRRDAGFHILITSYQLLVADEKY-------------FRRVKWQYMVLDEA 573 (1196)
Q Consensus 511 ~l~v~~y~G~---~~~r~~-l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~-------------l~~~~w~~VIlDEA 573 (1196)
.......... ...... .................++++++|+.+...... +....+++||+|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 5333211100 000000 000000000011234667999999999776432 23357899999999
Q ss_pred ccccCcccHHHHHHHhccccceEEeecCCC
Q 000994 574 QAIKSSNSIRWKTLLSFNCRNRLLLTGTPI 603 (1196)
Q Consensus 574 H~iKn~~S~~~kal~~l~~~~RllLTGTPi 603 (1196)
|++.+... ++.+..++..++++|||||.
T Consensus 156 H~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 99865443 77777788999999999995
No 53
>PRK02362 ski2-like helicase; Provisional
Probab=99.58 E-value=4.5e-13 Score=171.19 Aligned_cols=148 Identities=20% Similarity=0.131 Sum_probs=100.1
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHH-HHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHHhCC-CC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMA-FLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCP-DL 512 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIa-ll~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k~~p-~l 512 (1196)
.|+|+|.+++.-+ +..+.+.+++..+|.|||+.+.. ++..+.. .+.+|+|+| .++..++..++.++.+ ++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~~----~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIAR----GGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 6899999998753 33678999999999999998754 4444431 268999999 6788899999998754 57
Q ss_pred ccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh--hhccCccEEEECCCccccCccc-HHHHH-HH
Q 000994 513 KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY--FRRVKWQYMVLDEAQAIKSSNS-IRWKT-LL 588 (1196)
Q Consensus 513 ~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~--l~~~~w~~VIlDEAH~iKn~~S-~~~ka-l~ 588 (1196)
++..+.|+...... .....+|+|+|++.+...... ..--...+||+||+|.+.+..- ..... +.
T Consensus 96 ~v~~~tGd~~~~~~------------~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~ 163 (737)
T PRK02362 96 RVGISTGDYDSRDE------------WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLA 163 (737)
T ss_pred EEEEEeCCcCcccc------------ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHH
Confidence 78788886432210 114568999999877442211 0012458999999999975432 22222 22
Q ss_pred hc----cccceEEeecCC
Q 000994 589 SF----NCRNRLLLTGTP 602 (1196)
Q Consensus 589 ~l----~~~~RllLTGTP 602 (1196)
.+ .....++||||+
T Consensus 164 rl~~~~~~~qii~lSATl 181 (737)
T PRK02362 164 KLRRLNPDLQVVALSATI 181 (737)
T ss_pred HHHhcCCCCcEEEEcccC
Confidence 22 234668999996
No 54
>PRK01172 ski2-like helicase; Provisional
Probab=99.55 E-value=7.8e-13 Score=167.64 Aligned_cols=146 Identities=18% Similarity=0.125 Sum_probs=97.4
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHHhCC-CCc
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCP-DLK 513 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k~~p-~l~ 513 (1196)
.|+|+|.+++..+. .+.+.+++.++|.|||+++...+...... .+.+++|+| .++..++.+++.++.. +.+
T Consensus 22 ~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~~ 94 (674)
T PRK01172 22 ELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGMR 94 (674)
T ss_pred CCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCCe
Confidence 68999999998753 67789999999999999876554433322 257899999 5677889999988653 456
Q ss_pred cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhc----HhhhhccCccEEEECCCccccCcc-cHHHHHHH
Q 000994 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD----EKYFRRVKWQYMVLDEAQAIKSSN-SIRWKTLL 588 (1196)
Q Consensus 514 v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d----~~~l~~~~w~~VIlDEAH~iKn~~-S~~~kal~ 588 (1196)
+..+.|....... .....+|+|+|++.+... ...+. ++++||+||+|.+.+.. ......+.
T Consensus 95 v~~~~G~~~~~~~------------~~~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEaH~l~d~~rg~~le~ll 160 (674)
T PRK01172 95 VKISIGDYDDPPD------------FIKRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEIHIIGDEDRGPTLETVL 160 (674)
T ss_pred EEEEeCCCCCChh------------hhccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecchhccCCCccHHHHHHH
Confidence 6566664322110 013468999999875432 22222 46899999999996532 22233222
Q ss_pred ----hc-cccceEEeecCC
Q 000994 589 ----SF-NCRNRLLLTGTP 602 (1196)
Q Consensus 589 ----~l-~~~~RllLTGTP 602 (1196)
.+ .....++||||+
T Consensus 161 ~~~~~~~~~~riI~lSATl 179 (674)
T PRK01172 161 SSARYVNPDARILALSATV 179 (674)
T ss_pred HHHHhcCcCCcEEEEeCcc
Confidence 22 234568999996
No 55
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.55 E-value=4.9e-13 Score=158.47 Aligned_cols=117 Identities=19% Similarity=0.337 Sum_probs=106.2
Q ss_pred ccHHHHHHHHHHHHh-hCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCc
Q 000994 1055 SGKLQTLDILLKRLR-AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk-~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrA 1133 (1196)
..|...|..+|.... ..+-|||||+...++.|-|+.+|...+|+.+-|.|..++++|...++.|.+ +-+-+|+.|..
T Consensus 323 ~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre--G~~~vLVATdV 400 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE--GKSPVLVATDV 400 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc--CCcceEEEccc
Confidence 678899999999987 335699999999999999999999999999999999999999999999976 33456889999
Q ss_pred cccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCc
Q 000994 1134 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKD 1173 (1196)
Q Consensus 1134 GGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~ 1173 (1196)
++-||++...|+||.||++=|.....+++||-+|-|++-.
T Consensus 401 AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~ 440 (519)
T KOG0331|consen 401 AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGT 440 (519)
T ss_pred ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCce
Confidence 9999999999999999999999999999999999877754
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.53 E-value=2e-12 Score=164.85 Aligned_cols=147 Identities=20% Similarity=0.154 Sum_probs=100.0
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHH-HHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHHhCC-CC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQA-MAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCP-DL 512 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqa-Iall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k~~p-~l 512 (1196)
.|.|+|.+++.-. +..|.+.+++..+|.|||+.+ ++++..+... .+.+|+|+| ..+..++..++.+|.. +.
T Consensus 23 ~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa~q~~~~~~~~~~~g~ 96 (720)
T PRK00254 23 ELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALAEEKYREFKDWEKLGL 96 (720)
T ss_pred CCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHHHHHHHHHHhhcCC
Confidence 6899999998632 237789999999999999998 4445444432 258899999 5677889988887743 56
Q ss_pred ccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh----hhhccCccEEEECCCccccCc--ccHHHHH
Q 000994 513 KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK----YFRRVKWQYMVLDEAQAIKSS--NSIRWKT 586 (1196)
Q Consensus 513 ~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~----~l~~~~w~~VIlDEAH~iKn~--~S~~~ka 586 (1196)
++..++|....... ....++|+|+|++.+..... .+ -+..+||+||+|.+.+. .......
T Consensus 97 ~v~~~~Gd~~~~~~------------~~~~~~IiV~Tpe~~~~ll~~~~~~l--~~l~lvViDE~H~l~~~~rg~~le~i 162 (720)
T PRK00254 97 RVAMTTGDYDSTDE------------WLGKYDIIIATAEKFDSLLRHGSSWI--KDVKLVVADEIHLIGSYDRGATLEMI 162 (720)
T ss_pred EEEEEeCCCCCchh------------hhccCCEEEEcHHHHHHHHhCCchhh--hcCCEEEEcCcCccCCccchHHHHHH
Confidence 77777776432110 11457899999987744221 22 24689999999999643 2233333
Q ss_pred HHhc-cccceEEeecCC
Q 000994 587 LLSF-NCRNRLLLTGTP 602 (1196)
Q Consensus 587 l~~l-~~~~RllLTGTP 602 (1196)
+..+ .....++||||+
T Consensus 163 l~~l~~~~qiI~lSATl 179 (720)
T PRK00254 163 LTHMLGRAQILGLSATV 179 (720)
T ss_pred HHhcCcCCcEEEEEccC
Confidence 3333 345678899996
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.53 E-value=1.1e-12 Score=153.89 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCC--cEEEEeCCCCHHHHHH----HHHHHccCCCceEEEEe
Q 000994 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKY--RYLRLDGSSTIMDRRD----MVRDFQHRSDIFVFLLS 1130 (1196)
Q Consensus 1057 KL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~--~y~rLDGStk~~dR~~----~V~dFq~~~di~VfLLS 1130 (1196)
|...+..++..+ ..+.++|||+...+..+.+.++|...+. ....+.|..+..+|.. ++++|.. +... +|++
T Consensus 208 ~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~-~~~~-ilva 284 (358)
T TIGR01587 208 EISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK-NEKF-VIVA 284 (358)
T ss_pred CHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC-CCCe-EEEE
Confidence 444555555443 3478999999999999999999988776 4899999999999976 4889976 4454 4889
Q ss_pred cCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCC----cEEEEEeee
Q 000994 1131 TRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK----DVSSWLKLC 1181 (1196)
Q Consensus 1131 TrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK----~VtVYRLIt 1181 (1196)
|.+.+.|||+ .+|+||.++.+ +....|++||++|.|... .|.||....
T Consensus 285 T~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 285 TQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred Ccchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 9999999999 58999998765 778899999999999764 455555443
No 58
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.52 E-value=7.9e-12 Score=157.34 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=107.5
Q ss_pred hccCcHHHHHHHHHHHHhhhc------CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHH
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQ------GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEIS 506 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~------~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~ 506 (1196)
+...++||..+|+.+.....+ ..+|++.+.+|.|||++++.++..+...... ..+||||| ..|..||.++|.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~-~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKN-PKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCC-CeEEEEECcHHHHHHHHHHHH
Confidence 345799999999999887654 3579999999999999999998887654332 57899999 567889999999
Q ss_pred HhCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcH-hhhhcc----CccEEEECCCccccCccc
Q 000994 507 RFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE-KYFRRV----KWQYMVLDEAQAIKSSNS 581 (1196)
Q Consensus 507 k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~-~~l~~~----~w~~VIlDEAH~iKn~~S 581 (1196)
.+.++... -.++ ...+...+. .....|+|||++++.... ..+..+ ...+||+||||+.-. .
T Consensus 315 ~~~~~~~~--~~~s---~~~L~~~l~-------~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~ 380 (667)
T TIGR00348 315 SLQKDCAE--RIES---IAELKRLLE-------KDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--G 380 (667)
T ss_pred hhCCCCCc--ccCC---HHHHHHHHh-------CCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--h
Confidence 98753111 1111 111111111 123569999999997532 222222 123899999998632 2
Q ss_pred HHHHHHH-hccccceEEeecCCCCC
Q 000994 582 IRWKTLL-SFNCRNRLLLTGTPIQN 605 (1196)
Q Consensus 582 ~~~kal~-~l~~~~RllLTGTPiqN 605 (1196)
...+.+. .++...+++|||||+..
T Consensus 381 ~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 381 ELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred HHHHHHHhhCCCCcEEEEeCCCccc
Confidence 3344553 56778999999999864
No 59
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.46 E-value=8.3e-14 Score=126.66 Aligned_cols=78 Identities=28% Similarity=0.601 Sum_probs=72.6
Q ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccC
Q 000994 1090 DYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG 1169 (1196)
Q Consensus 1090 e~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiG 1169 (1196)
.+|...|+++..++|.++..+|.+++++|+.. +. .+|++|.++|.|||++.+++||+|+++|||....|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~-~~-~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSG-EI-RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTT-SS-SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhcc-Cc-eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 47899999999999999999999999999873 33 55778899999999999999999999999999999999999998
No 60
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=4.8e-12 Score=154.80 Aligned_cols=121 Identities=21% Similarity=0.360 Sum_probs=107.5
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
.|+..|..+|...... ++|||+.-....+.|...|..+|++...|.|+.++++|...+++|.+ +.+.| |+.|..++
T Consensus 259 ~k~~~L~~ll~~~~~~--~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~-g~~~v-LVaTDvaa 334 (513)
T COG0513 259 EKLELLLKLLKDEDEG--RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD-GELRV-LVATDVAA 334 (513)
T ss_pred HHHHHHHHHHhcCCCC--eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCE-EEEechhh
Confidence 4788888887775443 79999999999999999999999999999999999999999999984 67777 66779999
Q ss_pred cccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeC
Q 000994 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCH 1182 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~ 1182 (1196)
.||++...++||.||.+.+|....+++||.+|.|.+ =..+.|++.
T Consensus 335 RGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~--G~ai~fv~~ 379 (513)
T COG0513 335 RGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRK--GVAISFVTE 379 (513)
T ss_pred ccCCccccceeEEccCCCCHHHheeccCccccCCCC--CeEEEEeCc
Confidence 999999999999999999999999999999999944 356667776
No 61
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.44 E-value=4.6e-11 Score=148.47 Aligned_cols=119 Identities=17% Similarity=0.136 Sum_probs=101.7
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
.+...|..++.+.+.++...|..||||+......+.+...|...|+++..|.|.....+|..+...|+. . . ++++|
T Consensus 404 ~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~--g-~-VlIAT 479 (762)
T TIGR03714 404 ATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK--G-A-VTVAT 479 (762)
T ss_pred ECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC--C-e-EEEEc
Confidence 355789999999999988889999999999999999999999999999999999987777666665544 2 3 47899
Q ss_pred CccccccCcc---------cCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEE
Q 000994 1132 RAGGLGINLT---------AADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVS 1175 (1196)
Q Consensus 1132 rAGGlGINLT---------aAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~Vt 1175 (1196)
..+|-|+++. .-+.||.|+++=+ .++.|+.||++|.|..-...
T Consensus 480 dmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~-rid~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 480 SMAGRGTDIKLGKGVAELGGLAVIGTERMENS-RVDLQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred cccccccCCCCCccccccCCeEEEEecCCCCc-HHHHHhhhcccCCCCceeEE
Confidence 9999999998 7788999999854 47799999999999876533
No 62
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.42 E-value=1.4e-12 Score=137.38 Aligned_cols=158 Identities=25% Similarity=0.316 Sum_probs=112.6
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHHhCCC--
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPD-- 511 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k~~p~-- 511 (1196)
.++++||.+++..+.... .++++..++|+|||..++.++........ .+++||++| ..+..+|..++..+.+.
T Consensus 7 ~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 478999999999887321 68899999999999988777776655433 368999999 66788999999998865
Q ss_pred -CccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh--hhccCccEEEECCCccccC-cccHHHHHH
Q 000994 512 -LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY--FRRVKWQYMVLDEAQAIKS-SNSIRWKTL 587 (1196)
Q Consensus 512 -l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~--l~~~~w~~VIlDEAH~iKn-~~S~~~kal 587 (1196)
.....+.+.... ...... ....++|+++||+.+...... +...+++++|+||+|.+.+ .....+..+
T Consensus 83 ~~~~~~~~~~~~~-~~~~~~--------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 83 LKVVGLYGGDSKR-EQLRKL--------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred eEEEEEeCCcchH-HHHHHH--------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 334444443221 111111 012348999999998876554 4455788999999999986 444444444
Q ss_pred Hh-c-cccceEEeecCCCCC
Q 000994 588 LS-F-NCRNRLLLTGTPIQN 605 (1196)
Q Consensus 588 ~~-l-~~~~RllLTGTPiqN 605 (1196)
.. + +..+++++||||..+
T Consensus 154 ~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred HHhCCccceEEEEecCCchh
Confidence 33 3 578889999999743
No 63
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=1.8e-10 Score=144.42 Aligned_cols=118 Identities=16% Similarity=0.125 Sum_probs=104.3
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
+...|..+|..++.+....|..||||+......+.+...|...|+++..|.|.....+|+.+...++. + -++++|.
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~-g---~VlIATd 484 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK-G---AVTVATN 484 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC-C---eEEEEcc
Confidence 55789999999998887789999999999999999999999999999999999887787777777654 2 3578999
Q ss_pred ccccccCc---ccCC-----EEEEeCCCCCcchHHHHHHhhhccCCCCcE
Q 000994 1133 AGGLGINL---TAAD-----TVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1174 (1196)
Q Consensus 1133 AGGlGINL---TaAd-----tVIfyDsdWNPt~d~QAmdRahRiGQtK~V 1174 (1196)
.+|-|+++ .... +||.||.+=|+.++.|+.||++|.|+.-..
T Consensus 485 mAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 485 MAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred chhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 99999999 4666 999999999999999999999999987543
No 64
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.38 E-value=5.2e-11 Score=149.34 Aligned_cols=105 Identities=21% Similarity=0.324 Sum_probs=87.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH-----HHHHHHcc----CC-----CceEEEEecCccc
Q 000994 1070 AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRR-----DMVRDFQH----RS-----DIFVFLLSTRAGG 1135 (1196)
Q Consensus 1070 ~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~-----~~V~dFq~----~~-----di~VfLLSTrAGG 1135 (1196)
..+.+||||+.-.+..+.+.+.|...++ ..|.|.++..+|. .++++|.. .. .-..+|++|.+.+
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4567999999999999999999998887 8999999999999 78899975 11 1135689999999
Q ss_pred cccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCc--EEEEEe
Q 000994 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKD--VSSWLK 1179 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~--VtVYRL 1179 (1196)
.||++.. |+||.++.++ ....|++||++|.|.... ++|+.+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999975 9999988764 688999999999999644 455433
No 65
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.37 E-value=2.8e-11 Score=135.56 Aligned_cols=124 Identities=17% Similarity=0.247 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcccc
Q 000994 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1196)
Q Consensus 1057 KL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGl 1136 (1196)
|-..|..||.++. |.-+|||+..-..-+.+.-.|+..|+..+.|.|.++.+.|--.++.|+. +.+ -+|++|..|+-
T Consensus 287 K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-~~r-~iLv~TDVaSR 362 (476)
T KOG0330|consen 287 KDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA-GAR-SILVCTDVASR 362 (476)
T ss_pred cchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc-cCC-cEEEecchhcc
Confidence 5567888888754 5799999999999999999999999999999999999999999999997 333 44888999999
Q ss_pred ccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHH
Q 000994 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIF 1186 (1196)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIE 1186 (1196)
|++.+.+|.||.||-+-+-.....+.||..|-| +.-++..||+.--||
T Consensus 363 GLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 363 GLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred cCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 999999999999999999999999999999999 777888899886655
No 66
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.35 E-value=4.2e-12 Score=125.80 Aligned_cols=136 Identities=24% Similarity=0.250 Sum_probs=98.2
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHH-HHHHHHHhCC-CCccccccCChhhHHHHhhccCcc
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNN-WADEISRFCP-DLKTLPYWGGLQERMVLRKNINPK 534 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~n-W~~Ei~k~~p-~l~v~~y~G~~~~r~~l~~~~~~~ 534 (1196)
++++...+|.|||.+++.++..+..... .++++|+||...+.+ |...+.++.. ...+..+.+........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~-~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLK-GGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE------- 73 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhccc-CCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH-------
Confidence 6799999999999999999988876533 378999999876555 5666777765 45555555543332211
Q ss_pred cccccCCCceEEEEehhhHHhcHhhh--hccCccEEEECCCccccCcccHHH---HHHHhccccceEEeecCC
Q 000994 535 RLYRRDAGFHILITSYQLLVADEKYF--RRVKWQYMVLDEAQAIKSSNSIRW---KTLLSFNCRNRLLLTGTP 602 (1196)
Q Consensus 535 ~~~~~~~~~~VvItSYe~l~~d~~~l--~~~~w~~VIlDEAH~iKn~~S~~~---kal~~l~~~~RllLTGTP 602 (1196)
.......+|+++||+.+....... ....|+++|+||+|.+.+...... ...........+++||||
T Consensus 74 --~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 --KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred --HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 011246789999999887654332 244799999999999988776554 344456778899999998
No 67
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.34 E-value=2.7e-12 Score=116.42 Aligned_cols=81 Identities=27% Similarity=0.509 Sum_probs=75.1
Q ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhh
Q 000994 1087 ILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAH 1166 (1196)
Q Consensus 1087 lLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRah 1166 (1196)
.+.++|...++.+..++|+++.++|..++++|+.. +. .+|++|.+++.|+|+..+++||+++++||+....|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNG-KI-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcC-CC-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 46788888899999999999999999999999873 33 77889999999999999999999999999999999999999
Q ss_pred ccC
Q 000994 1167 RLG 1169 (1196)
Q Consensus 1167 RiG 1169 (1196)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 68
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.32 E-value=2.8e-10 Score=141.94 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=86.7
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEE
Q 000994 1071 ENHRVLLFAQMTKMLNILEDYMNYR--KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1196)
Q Consensus 1071 ~ghKVLIFSQ~t~mlDlLee~L~~r--g~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1196)
.+.++|||..-...++.+.+.|... ++..+-|.|+++. +.+.+++|..++..+ +|++|..++.||++...++||-
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~k-ILVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPS-IIISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCcee-EEeccChhhccccccCeeEEEE
Confidence 3568999999999999999999887 7999999999985 457778885434554 5889999999999999999998
Q ss_pred eCCCCCcc---------hHHHHHHhhhccCCCCcEEEEEeeeCCcHH
Q 000994 1149 YESDWNPT---------LDLQAMDRAHRLGQTKDVSSWLKLCHLFIF 1186 (1196)
Q Consensus 1149 yDsdWNPt---------~d~QAmdRahRiGQtK~VtVYRLIt~gTIE 1186 (1196)
++....|. .-++++-|++|-|.+++-++|+|+++...+
T Consensus 471 ~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 471 TGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLK 517 (675)
T ss_pred CCCccCCCcccCcccccCHHHHHHhccCcCCCCCCeEEEEECHHHhH
Confidence 87222221 233444455555555789999999988754
No 69
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.31 E-value=3.5e-11 Score=138.29 Aligned_cols=118 Identities=22% Similarity=0.260 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhCCCeEEEEecchHHHH----HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1060 TLDILLKRLRAENHRVLLFAQMTKMLN----ILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1060 ~Ld~LL~~Lk~~ghKVLIFSQ~t~mlD----lLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
.+..++... ...|+|+|+....... +|.-.+...+.++-.+.|+...+.|.+++++|.. +++.|+++| .+.+
T Consensus 419 ~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~-g~i~vLIcS-D~la 494 (620)
T KOG0350|consen 419 AVYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK-GDINVLICS-DALA 494 (620)
T ss_pred hHHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc-CCceEEEeh-hhhh
Confidence 344444443 3569999987765544 4444444566777779999999999999999987 889997766 9999
Q ss_pred cccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
-||++-..|.||.|||+-.-.....++||..|-||.- ++|.|+...
T Consensus 495 RGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~ 540 (620)
T KOG0350|consen 495 RGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH 540 (620)
T ss_pred cCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeeccc
Confidence 9999999999999999877777777888888888864 455565543
No 70
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=2.5e-09 Score=131.74 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=100.3
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
+...|..+|..++.++...|..||||+......+.+.+.|...|+++..|.|... +|...+..|...+. -++++|.
T Consensus 454 t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g--~VlVATd 529 (656)
T PRK12898 454 TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRG--RITVATN 529 (656)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCC--cEEEEcc
Confidence 4567999999999998777889999999999999999999999999999999854 66666667765332 2678999
Q ss_pred ccccccCcc---cCC-----EEEEeCCCCCcchHHHHHHhhhccCCCCc
Q 000994 1133 AGGLGINLT---AAD-----TVIFYESDWNPTLDLQAMDRAHRLGQTKD 1173 (1196)
Q Consensus 1133 AGGlGINLT---aAd-----tVIfyDsdWNPt~d~QAmdRahRiGQtK~ 1173 (1196)
.+|-|+++. ... +||.||.+=|+.++.|++||++|.|..-.
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~ 578 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGS 578 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeE
Confidence 999999988 333 99999999999999999999999997643
No 71
>PRK09401 reverse gyrase; Reviewed
Probab=99.28 E-value=4.3e-10 Score=147.98 Aligned_cols=102 Identities=19% Similarity=0.135 Sum_probs=81.3
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHH---HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEe--
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKM---LNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLS-- 1130 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~m---lDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLS-- 1130 (1196)
.|...|.+++..+ |..+|||++.... .+.+.++|...|++...+.|.+ + ..+++|.+ +++.|++.+
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l----~-~~l~~F~~-G~~~VLVatas 385 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF----E-RKFEKFEE-GEVDVLVGVAS 385 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH----H-HHHHHHHC-CCCCEEEEecC
Confidence 4666777777655 5689999998766 9999999999999999999998 2 34599976 788887775
Q ss_pred -cCccccccCccc-CCEEEEeCCCC------CcchHHHHHHhhh
Q 000994 1131 -TRAGGLGINLTA-ADTVIFYESDW------NPTLDLQAMDRAH 1166 (1196)
Q Consensus 1131 -TrAGGlGINLTa-AdtVIfyDsdW------NPt~d~QAmdRah 1166 (1196)
|...+-||++.. -..|||||.+= ......-+++|.-
T Consensus 386 ~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 386 YYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred CCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 789999999998 89999999975 3344455555553
No 72
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.28 E-value=4.6e-10 Score=148.35 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=61.4
Q ss_pred EEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhcc
Q 000994 1099 YLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRL 1168 (1196)
Q Consensus 1099 y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRi 1168 (1196)
.....||.+.++|..+.+.|.+ +.++| |++|.+..+|||+.+.|.||.|+++.+.+...|++||++|-
T Consensus 304 a~~HHGsLSkeeR~~IE~~fK~-G~Lrv-LVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 304 ARSHHGSVSKEQRAITEQALKS-GELRC-VVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred eeeccccCCHHHHHHHHHHHHh-CCceE-EEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 3456799999999999999986 66765 77889999999999999999999999999999999999874
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.26 E-value=2.8e-10 Score=140.76 Aligned_cols=120 Identities=18% Similarity=0.121 Sum_probs=106.3
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
+...|+.++.+.+.++...|..||||+......+.+..+|..+|+++..|.|. ..+|...+..|.. ...-++++|.
T Consensus 386 t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag--~~g~VtIATn 461 (745)
T TIGR00963 386 TEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAG--RKGAVTIATN 461 (745)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcC--CCceEEEEec
Confidence 44579999999998888999999999999999999999999999999999998 5689999999965 3335588999
Q ss_pred ccccccCccc-------CCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEE
Q 000994 1133 AGGLGINLTA-------ADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1133 AGGlGINLTa-------AdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtV 1176 (1196)
.+|-|+++.. --+||.+|.+=|+.++.|+.||++|-|+.-....
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 9999999877 6699999999999999999999999999865444
No 74
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.23 E-value=4.4e-09 Score=132.89 Aligned_cols=153 Identities=15% Similarity=0.150 Sum_probs=101.5
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCCCCcc
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPDLKT 514 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p~l~v 514 (1196)
.|.++|.++++.+.+.. .+...+|...+|.|||...+.++......+ +.+||++|. .+..||.+.+.++++ .++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g---~~vLvLvPt~~L~~Q~~~~l~~~fg-~~v 218 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG---KQALVLVPEIALTPQMLARFRARFG-APV 218 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhC-CCE
Confidence 68999999999887543 344678889999999999887766555432 579999995 567899999998774 577
Q ss_pred ccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccC--cccHHH--H---HH
Q 000994 515 LPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKS--SNSIRW--K---TL 587 (1196)
Q Consensus 515 ~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn--~~S~~~--k---al 587 (1196)
.+++|........ ..|... ..+..+|||+|.+.+... + -+..+||+||+|...- .....+ + .+
T Consensus 219 ~~~~s~~s~~~r~-~~~~~~----~~g~~~IVVgTrsal~~p---~--~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ 288 (679)
T PRK05580 219 AVLHSGLSDGERL-DEWRKA----KRGEAKVVIGARSALFLP---F--KNLGLIIVDEEHDSSYKQQEGPRYHARDLAVV 288 (679)
T ss_pred EEEECCCCHHHHH-HHHHHH----HcCCCCEEEeccHHhccc---c--cCCCEEEEECCCccccccCcCCCCcHHHHHHH
Confidence 7888764332211 111100 124568999998776422 1 2568999999997632 222111 1 11
Q ss_pred H-hccccceEEeecCCC
Q 000994 588 L-SFNCRNRLLLTGTPI 603 (1196)
Q Consensus 588 ~-~l~~~~RllLTGTPi 603 (1196)
+ .......+++|+||.
T Consensus 289 ra~~~~~~~il~SATps 305 (679)
T PRK05580 289 RAKLENIPVVLGSATPS 305 (679)
T ss_pred HhhccCCCEEEEcCCCC
Confidence 1 223456788999995
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.19 E-value=3.4e-09 Score=124.53 Aligned_cols=84 Identities=20% Similarity=0.286 Sum_probs=66.8
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhCC--CcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEE
Q 000994 1071 ENHRVLLFAQMTKMLNILEDYMNYRK--YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1196)
Q Consensus 1071 ~ghKVLIFSQ~t~mlDlLee~L~~rg--~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1196)
.|.|+|||+.-.+..+.+.+.|...+ +.+..+.|..+.++|.... . ..+|++|.+.+.||++.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~-~~iLVaTdv~~rGiDi~~-~~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------Q-FDILLGTSTVDVGVDFKR-DWLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------c-CCEEEEecHHhcccCCCC-ceEE-
Confidence 57899999999999999999998765 5788999999988886542 2 246899999999999975 6777
Q ss_pred eCCCCCcchHHHHHHhh
Q 000994 1149 YESDWNPTLDLQAMDRA 1165 (1196)
Q Consensus 1149 yDsdWNPt~d~QAmdRa 1165 (1196)
++| -++....|++||+
T Consensus 341 ~~p-~~~~~yiqR~GR~ 356 (357)
T TIGR03158 341 FSA-RDAAAFWQRLGRL 356 (357)
T ss_pred ECC-CCHHHHhhhcccC
Confidence 564 3566677766665
No 76
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.19 E-value=4.5e-09 Score=131.59 Aligned_cols=119 Identities=19% Similarity=0.151 Sum_probs=98.0
Q ss_pred HHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcc
Q 000994 1063 ILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRK-YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLT 1141 (1196)
Q Consensus 1063 ~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg-~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLT 1141 (1196)
..+.++.++...+|||..-..+...+...|++.+ ..+..=.||.+.+.|...-++|.. ++.++ +++|.+.-+||+.-
T Consensus 244 ~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~-G~lra-vV~TSSLELGIDiG 321 (814)
T COG1201 244 ERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE-GELKA-VVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc-CCceE-EEEccchhhccccC
Confidence 3344444444589999999999999999999887 777777899999999999999987 66888 55668999999999
Q ss_pred cCCEEEEeCCCCCcchHHHHHHhh-hccCCCCcEEEEEeeeCCcHHH
Q 000994 1142 AADTVIFYESDWNPTLDLQAMDRA-HRLGQTKDVSSWLKLCHLFIFS 1187 (1196)
Q Consensus 1142 aAdtVIfyDsdWNPt~d~QAmdRa-hRiGQtK~VtVYRLIt~gTIEE 1187 (1196)
..|-||.|.|+-.-+.-.|++||+ ||+|.+- -+.+|+.+ .++
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~S---kg~ii~~~-r~d 364 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVS---KGIIIAED-RDD 364 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcc---cEEEEecC-HHH
Confidence 999999999999999999999999 8888754 34455555 444
No 77
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.15 E-value=5.9e-09 Score=126.33 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=93.9
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCC
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1196)
+...|||+.-.+..+-+.++|...|++...+.|.+..++|...-++|++ .++.| ++.|-|-|.|||=...-.||+||.
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~-~~~~i-iVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN-DEIKV-MVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhc-CCCcE-EEEeccccCccCCCCceEEEEecC
Confidence 4457999999999999999999999999999999999999999999996 55655 667899999999999999999999
Q ss_pred CCCcchHHHHHHhhhccCCCCcEEE
Q 000994 1152 DWNPTLDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1152 dWNPt~d~QAmdRahRiGQtK~VtV 1176 (1196)
+=+....-|=+|||+|-|..-...+
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEE
Confidence 9999999999999999998766554
No 78
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.15 E-value=3.7e-09 Score=127.79 Aligned_cols=158 Identities=16% Similarity=0.262 Sum_probs=110.3
Q ss_pred ccCcHHHHHHHHHHHHhhhcCC--CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHH-HHHHHHHHhCCC
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGL--NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN-NWADEISRFCPD 511 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~--ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~-nW~~Ei~k~~p~ 511 (1196)
..|-..|..+++=+..-..+.. +=+|--|+|.|||+.|+..+....+.+ .-..+.+|..+|. |-...+.+|++.
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---YQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---CeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 5788899999987765444332 346777899999999876666555543 3568889988865 688889999974
Q ss_pred --CccccccCChhhH--HHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHH
Q 000994 512 --LKTLPYWGGLQER--MVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTL 587 (1196)
Q Consensus 512 --l~v~~y~G~~~~r--~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal 587 (1196)
+.|....|+.+.. ......+ ..+..++||-|+..+.....+ .+..+||+||=|++.- ..-..|
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l-------~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFGV---~QR~~L 404 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQL-------ASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFGV---HQRLAL 404 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHH-------hCCCCCEEEEcchhhhcceee---cceeEEEEeccccccH---HHHHHH
Confidence 5666666764332 2222211 236689999999988765443 2568999999999843 333344
Q ss_pred Hhc-c-ccceEEeecCCCCCChH
Q 000994 588 LSF-N-CRNRLLLTGTPIQNNMA 608 (1196)
Q Consensus 588 ~~l-~-~~~RllLTGTPiqN~l~ 608 (1196)
..- . .++.|.+|||||..++.
T Consensus 405 ~~KG~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 405 REKGEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred HHhCCCCCcEEEEeCCCchHHHH
Confidence 433 3 57999999999998765
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.14 E-value=1.6e-09 Score=142.94 Aligned_cols=128 Identities=20% Similarity=0.267 Sum_probs=90.8
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCCCC--
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPDL-- 512 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p~l-- 512 (1196)
.+.++|..++..++ .|.+.++...+|.|||.-++.++..+... ...+|||+|. .+..|+.+++.+++...
T Consensus 78 ~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~f~l~~~~~l~~~---g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i 150 (1171)
T TIGR01054 78 EPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTTFGLAMSLFLAKK---GKRCYIILPTTLLVIQVAEKISSLAEKAGV 150 (1171)
T ss_pred CCcHHHHHHHHHHh----CCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCHHHHHHHHHHHHHHHHHhcCC
Confidence 57899999887766 67788999999999998666555444332 2579999995 56778999999988643
Q ss_pred c---cccccCChhhH--HHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccC
Q 000994 513 K---TLPYWGGLQER--MVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKS 578 (1196)
Q Consensus 513 ~---v~~y~G~~~~r--~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn 578 (1196)
. +..|+|+.... ......+ ..+.++|+|+|.+.+......+.. +++++|+||||++-.
T Consensus 151 ~~~~i~~~~Gg~~~~e~~~~~~~l-------~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 151 GTVNIGAYHSRLPTKEKKEFMERI-------ENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred ceeeeeeecCCCCHHHHHHHHHHH-------hcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 2 23466754322 1111111 124589999999998876555544 799999999999865
No 80
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.12 E-value=1.2e-10 Score=141.76 Aligned_cols=158 Identities=20% Similarity=0.278 Sum_probs=124.1
Q ss_pred ccCCchhhccCcHHHHHHHHHHHHhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHH
Q 000994 427 VQTPELFKGSLKEYQLKGLQWLVNCYEQGLN-GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADE 504 (1196)
Q Consensus 427 v~~P~~l~~~LrpyQl~gl~wL~~~~~~~~g-gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~E 504 (1196)
...|......+|+||..+++.+.+.+.+|.+ .+|+..+|.|||.+||+++..|...... +.+|.++- .+++.|=..+
T Consensus 156 ~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~-KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 156 AYIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWV-KRVLFLADRNALVDQAYGA 234 (875)
T ss_pred ccCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchh-heeeEEechHHHHHHHHHH
Confidence 3445555668999999999999999987764 7999999999999999999999876554 78899987 7888999999
Q ss_pred HHHhCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh-------hhccCccEEEECCCcccc
Q 000994 505 ISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY-------FRRVKWQYMVLDEAQAIK 577 (1196)
Q Consensus 505 i~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~-------l~~~~w~~VIlDEAH~iK 577 (1196)
|..|.|....+...... .....+.|+|.||+++...... +..-.||+||+||||+
T Consensus 235 f~~~~P~~~~~n~i~~~----------------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR-- 296 (875)
T COG4096 235 FEDFLPFGTKMNKIEDK----------------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR-- 296 (875)
T ss_pred HHHhCCCccceeeeecc----------------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh--
Confidence 99999987665432211 1123678999999999775432 3334699999999997
Q ss_pred CcccHHHHHHHhccccceEEeecCCCC
Q 000994 578 SSNSIRWKTLLSFNCRNRLLLTGTPIQ 604 (1196)
Q Consensus 578 n~~S~~~kal~~l~~~~RllLTGTPiq 604 (1196)
...+.|+.+..+-...+.+||+||-.
T Consensus 297 -gi~~~~~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 297 -GIYSEWSSILDYFDAATQGLTATPKE 322 (875)
T ss_pred -hHHhhhHHHHHHHHHHHHhhccCccc
Confidence 34566777777777778888999976
No 81
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.10 E-value=1e-08 Score=131.42 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=94.5
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHH----HHHHhCC----CcEEEEeCCCCHHHHHHHHHHHccCCCceEE
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILE----DYMNYRK----YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVF 1127 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLe----e~L~~rg----~~y~rLDGStk~~dR~~~V~dFq~~~di~Vf 1127 (1196)
.+...+..+...+..+|.++|+|+-+.++..++. ..+...+ .......|++..++|+.+..+|.. +++ .+
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~-g~~-~~ 367 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE-GEL-LG 367 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc-CCc-cE
Confidence 4556677788888889999999999999998886 4444444 567888999999999999999987 444 55
Q ss_pred EEecCccccccCcccCCEEEEeCCCC-CcchHHHHHHhhhccCCCCc
Q 000994 1128 LLSTRAGGLGINLTAADTVIFYESDW-NPTLDLQAMDRAHRLGQTKD 1173 (1196)
Q Consensus 1128 LLSTrAGGlGINLTaAdtVIfyDsdW-NPt~d~QAmdRahRiGQtK~ 1173 (1196)
++||-|.-+||.+-+.|.||.+--+= .-..-.|..|||+|-||.--
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l 414 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESL 414 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCce
Confidence 88999999999999999999987765 44567798999999995543
No 82
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.10 E-value=1.1e-09 Score=124.26 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=90.0
Q ss_pred cccccHHHHHHHHHHHH-----hhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH-----------
Q 000994 1052 LTDSGKLQTLDILLKRL-----RAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMV----------- 1115 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~L-----k~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V----------- 1115 (1196)
...|||+..|..|+..+ ...+.+|||.++-.+++|+||.+|.-.+++|-|++|.+-..+....-
T Consensus 92 ~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~ 171 (297)
T PF11496_consen 92 AYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSN 171 (297)
T ss_dssp HHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S------------
T ss_pred HHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccccccccccc
Confidence 34599999999999999 77789999999999999999999999999999999987655444333
Q ss_pred -HHHc--cCCCceEEEEecCcccc----ccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHH
Q 000994 1116 -RDFQ--HRSDIFVFLLSTRAGGL----GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSM 1188 (1196)
Q Consensus 1116 -~dFq--~~~di~VfLLSTrAGGl----GINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEEr 1188 (1196)
.... ....+.|+|++|.-... .++-...|-||-+|+.+|++.+.-..=|.+--.+ +.+-|+|||..+|||--
T Consensus 172 ~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi 250 (297)
T PF11496_consen 172 NSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHI 250 (297)
T ss_dssp ----------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHH
T ss_pred ccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHH
Confidence 1111 13457788888764433 2344567899999999999988877777654444 89999999999999976
Q ss_pred Hhc
Q 000994 1189 IGN 1191 (1196)
Q Consensus 1189 Il~ 1191 (1196)
++.
T Consensus 251 ~L~ 253 (297)
T PF11496_consen 251 ELC 253 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 83
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.09 E-value=2.6e-08 Score=115.78 Aligned_cols=117 Identities=21% Similarity=0.380 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhh--CCCeEEEEecchHHHH----HHHHHHHh------------------CCCcEEEEeCCCCHHHHHH
Q 000994 1058 LQTLDILLKRLRA--ENHRVLLFAQMTKMLN----ILEDYMNY------------------RKYRYLRLDGSSTIMDRRD 1113 (1196)
Q Consensus 1058 L~~Ld~LL~~Lk~--~ghKVLIFSQ~t~mlD----lLee~L~~------------------rg~~y~rLDGStk~~dR~~ 1113 (1196)
|..|..+|..... ...|+|||+.-+.+.+ ++.+.+.. .+.+++||.||+.+++|..
T Consensus 409 LV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts 488 (708)
T KOG0348|consen 409 LVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTS 488 (708)
T ss_pred HHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHH
Confidence 4456666666533 3569999999888866 44444443 2457999999999999999
Q ss_pred HHHHHccCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEE
Q 000994 1114 MVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1114 ~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtV 1176 (1196)
....|.+..+. +||+|..++-||+|...+-||-||++..|+....++||.-|+|-+-.--.
T Consensus 489 ~f~~Fs~~~~~--VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL 549 (708)
T KOG0348|consen 489 VFQEFSHSRRA--VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL 549 (708)
T ss_pred HHHhhccccce--EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE
Confidence 99999875543 78899999999999999999999999999999999999999998765544
No 84
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=1.4e-08 Score=124.16 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=70.6
Q ss_pred HHHHHHHHhC--CCcEEEEeCCCCHHHH--HHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCCCC---Cc---
Q 000994 1086 NILEDYMNYR--KYRYLRLDGSSTIMDR--RDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDW---NP--- 1155 (1196)
Q Consensus 1086 DlLee~L~~r--g~~y~rLDGStk~~dR--~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdW---NP--- 1155 (1196)
+.+++.|... +.++.++|+.++...+ ..++++|.. +++.| |+.|...+-|+++...+.|+++|.|- .|
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~-g~~~I-LVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~r 349 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN-GKADI-LIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFR 349 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc-CCCCE-EEeCcccccCCCCCcccEEEEEcCcccccCcccc
Confidence 3445555443 7788999999876555 899999976 55555 67899999999999999998887762 34
Q ss_pred ------chHHHHHHhhhccCCCCcEEEEEe
Q 000994 1156 ------TLDLQAMDRAHRLGQTKDVSSWLK 1179 (1196)
Q Consensus 1156 ------t~d~QAmdRahRiGQtK~VtVYRL 1179 (1196)
....|+.||++|-|....|.+.-.
T Consensus 350 a~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 350 AAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 467999999999888777765443
No 85
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.07 E-value=6.6e-09 Score=121.89 Aligned_cols=104 Identities=19% Similarity=0.382 Sum_probs=95.7
Q ss_pred CeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCCC
Q 000994 1073 HRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESD 1152 (1196)
Q Consensus 1073 hKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsd 1152 (1196)
++++||..-.++.|-++.+|...++++.-+.|.-+..+|...+++|.. ..+-| |+.|...+-|||....+|||.||.+
T Consensus 338 e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~-g~~pv-lVaT~VaaRGlDi~~V~hVInyDmP 415 (482)
T KOG0335|consen 338 EKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN-GKAPV-LVATNVAARGLDIPNVKHVINYDMP 415 (482)
T ss_pred ceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc-CCcce-EEEehhhhcCCCCCCCceeEEeecC
Confidence 599999999999999999999999999999999999999999999976 55555 6677999999999999999999999
Q ss_pred CCcchHHHHHHhhhccCCCCcEEEEE
Q 000994 1153 WNPTLDLQAMDRAHRLGQTKDVSSWL 1178 (1196)
Q Consensus 1153 WNPt~d~QAmdRahRiGQtK~VtVYR 1178 (1196)
=+-..+..+|||.+|.|++-..|++-
T Consensus 416 ~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 416 ADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred cchhhHHHhccccccCCCCceeEEEe
Confidence 99888999999999999998888743
No 86
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.03 E-value=3.7e-08 Score=113.26 Aligned_cols=120 Identities=18% Similarity=0.316 Sum_probs=102.6
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHh--CCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNY--RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~--rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
.-|+..|..+|... ...|+|||+..-...++....|.. .++..+-+.|.++...|...+..|...+ .-.|++|.
T Consensus 240 ~eK~~~lv~~L~~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~--~~vl~~TD 315 (567)
T KOG0345|consen 240 DEKLSQLVHLLNNN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLS--NGVLFCTD 315 (567)
T ss_pred HHHHHHHHHHHhcc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhcc--CceEEeeh
Confidence 45888888888873 457999999988888887777754 4788999999999999999999997622 34478899
Q ss_pred ccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEE
Q 000994 1133 AGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWL 1178 (1196)
Q Consensus 1133 AGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYR 1178 (1196)
.++-||+....|-||-|||+-+|+.-..+.||..|.|..-.--|+-
T Consensus 316 VaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl 361 (567)
T KOG0345|consen 316 VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFL 361 (567)
T ss_pred hhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEe
Confidence 9999999999999999999999999999999999999877665543
No 87
>COG4889 Predicted helicase [General function prediction only]
Probab=99.03 E-value=5.6e-09 Score=125.98 Aligned_cols=160 Identities=21% Similarity=0.264 Sum_probs=101.9
Q ss_pred hccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHh----
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRF---- 508 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~---- 508 (1196)
...|||||..++....+.+..+-.|=|-..+|.|||.+++-+...+.. ..+|.++|. ++|.|-.+|...-
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~ 233 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELD 233 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCcc
Confidence 458999999999999988888888888888999999999998888876 478999995 5566533332211
Q ss_pred ------CCCCcc-----------ccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh--hhccCccEEE
Q 000994 509 ------CPDLKT-----------LPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY--FRRVKWQYMV 569 (1196)
Q Consensus 509 ------~p~l~v-----------~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~--l~~~~w~~VI 569 (1196)
|.+-+| +++-.+...+..+...-. ..+..+.-||.+||+.+-.-.+. .---.|++||
T Consensus 234 ~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~----~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDlii 309 (1518)
T COG4889 234 FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEH----RQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLII 309 (1518)
T ss_pred ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHH----hhccCCcEEEEEcccchHHHHHHHHcCCCCccEEE
Confidence 111111 122222222222211111 11335567999999998664332 2234799999
Q ss_pred ECCCccccCc------ccHHHH--HHHhccccceEEeecCC
Q 000994 570 LDEAQAIKSS------NSIRWK--TLLSFNCRNRLLLTGTP 602 (1196)
Q Consensus 570 lDEAH~iKn~------~S~~~k--al~~l~~~~RllLTGTP 602 (1196)
+||||+--.. .|...+ .-..+++..|+-+|+||
T Consensus 310 cDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 310 CDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred ecchhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 9999986331 111111 11234677899999999
No 88
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.02 E-value=1.8e-09 Score=112.19 Aligned_cols=157 Identities=17% Similarity=0.248 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCCC--Cccc
Q 000994 439 EYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPD--LKTL 515 (1196)
Q Consensus 439 pyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p~--l~v~ 515 (1196)
|+|.+++.-+. ++.+.++...+|.|||..++..+....... ..+.+||++|. .++.+=.+++.+++.. .++.
T Consensus 2 ~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 79999988776 567789999999999999886655544333 23589999994 5677888889888754 6666
Q ss_pred cccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh--hhccCccEEEECCCccccCc-ccHHHHHH-Hhc-
Q 000994 516 PYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY--FRRVKWQYMVLDEAQAIKSS-NSIRWKTL-LSF- 590 (1196)
Q Consensus 516 ~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~--l~~~~w~~VIlDEAH~iKn~-~S~~~kal-~~l- 590 (1196)
.++|...........+ ....+|+|+|++.+...... ..-...++||+||+|.+-.. .......+ ..+
T Consensus 77 ~~~~~~~~~~~~~~~~--------~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 77 LLHGGQSISEDQREVL--------SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLK 148 (169)
T ss_dssp EESTTSCHHHHHHHHH--------HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH
T ss_pred cccccccccccccccc--------cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhc
Confidence 6666543211111111 14578999999998776543 12234789999999999763 22223333 333
Q ss_pred --cccceEEeecCCCCCChHH
Q 000994 591 --NCRNRLLLTGTPIQNNMAE 609 (1196)
Q Consensus 591 --~~~~RllLTGTPiqN~l~E 609 (1196)
.....+++||||- .++..
T Consensus 149 ~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 149 RFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp TTTTSEEEEEESSST-HHHHH
T ss_pred CCCCCcEEEEeeCCC-hhHhh
Confidence 2356899999997 55544
No 89
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.02 E-value=2.5e-09 Score=115.05 Aligned_cols=155 Identities=23% Similarity=0.256 Sum_probs=103.1
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHH-HHHHHHHHHhc-ccCCcEEEEeCC-ccHHHHHHHHHHhCC--
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQA-MAFLAHLAEEK-NIWGPFLVVAPA-SVLNNWADEISRFCP-- 510 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqa-Iall~~l~~~~-~~~gp~LIV~P~-sll~nW~~Ei~k~~p-- 510 (1196)
.+++||.++++-+. ++.+.++..++|.|||+.. +.++..+.... .....+|||+|. .++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~----~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLL----SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 57999999998777 3778999999999999985 44444444431 222468999994 568889999988864
Q ss_pred CCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh--hhhccCccEEEECCCccccCccc-HHHHH-
Q 000994 511 DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK--YFRRVKWQYMVLDEAQAIKSSNS-IRWKT- 586 (1196)
Q Consensus 511 ~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~--~l~~~~w~~VIlDEAH~iKn~~S-~~~ka- 586 (1196)
+.++..+.|+.......... ..+.+|+|+|.+.+..... .+.--.++++|+||+|.+.+... .....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~---------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~ 167 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL---------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREI 167 (203)
T ss_pred CceEEEEECCCCHHHHHHHh---------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHH
Confidence 56666677765433221111 1356899999887654221 11223568999999999865431 22222
Q ss_pred HHhcc-ccceEEeecCCC
Q 000994 587 LLSFN-CRNRLLLTGTPI 603 (1196)
Q Consensus 587 l~~l~-~~~RllLTGTPi 603 (1196)
+..+. ....+++||||-
T Consensus 168 ~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 168 LKLLPKDRQTLLFSATMP 185 (203)
T ss_pred HHhCCcccEEEEEeccCC
Confidence 23333 466799999997
No 90
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.02 E-value=8.2e-09 Score=130.62 Aligned_cols=150 Identities=17% Similarity=0.108 Sum_probs=105.3
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHHhC-CCCc
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFC-PDLK 513 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k~~-p~l~ 513 (1196)
.|+|+|..++.-.+. .+.|.+++-.+|.|||+.+...|......+ .++.+.||| .+|..+=..||.+|- -+++
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 899999999854432 378999999999999999977766655443 369999999 677777888888554 3789
Q ss_pred cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhh--hccCccEEEECCCccccCc-cc-----HHHH
Q 000994 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYF--RRVKWQYMVLDEAQAIKSS-NS-----IRWK 585 (1196)
Q Consensus 514 v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l--~~~~w~~VIlDEAH~iKn~-~S-----~~~k 585 (1196)
|.+++|+..... .....++|+||||+.+-...... --...++||+||+|.+... .- ..++
T Consensus 106 V~~~TgD~~~~~------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r 173 (766)
T COG1204 106 VGISTGDYDLDD------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVAR 173 (766)
T ss_pred EEEecCCcccch------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHH
Confidence 999999754332 12367899999999985432211 1225689999999999776 22 2222
Q ss_pred HHHhccccceEEeecCC
Q 000994 586 TLLSFNCRNRLLLTGTP 602 (1196)
Q Consensus 586 al~~l~~~~RllLTGTP 602 (1196)
+...-..-+.+.||+|-
T Consensus 174 ~~~~~~~~rivgLSATl 190 (766)
T COG1204 174 MRRLNELIRIVGLSATL 190 (766)
T ss_pred HHhhCcceEEEEEeeec
Confidence 22222224667899993
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.01 E-value=7.1e-08 Score=123.46 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=81.0
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhCC---CcEEEEeCCCCHHHH----HHHHHHHccCCCc--eEEEEecCccccccCc
Q 000994 1070 AENHRVLLFAQMTKMLNILEDYMNYRK---YRYLRLDGSSTIMDR----RDMVRDFQHRSDI--FVFLLSTRAGGLGINL 1140 (1196)
Q Consensus 1070 ~~ghKVLIFSQ~t~mlDlLee~L~~rg---~~y~rLDGStk~~dR----~~~V~dFq~~~di--~VfLLSTrAGGlGINL 1140 (1196)
..|.+||||+.-.+-..-+.++|...+ ++...+.|..+..+| .++++.|..++.. ..+|++|.....||++
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL 637 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec
Confidence 468899999999999999999998765 678999999999999 5688999433322 3458999999999999
Q ss_pred ccCCEEEEeCCCCCcchHHHHHHhhhccCCC
Q 000994 1141 TAADTVIFYESDWNPTLDLQAMDRAHRLGQT 1171 (1196)
Q Consensus 1141 TaAdtVIfyDsdWNPt~d~QAmdRahRiGQt 1171 (1196)
.+|.||....+ .....|++||+||-|..
T Consensus 638 -d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 -DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred -CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 57988886554 45678999999999975
No 92
>PRK14701 reverse gyrase; Provisional
Probab=98.99 E-value=3.9e-08 Score=132.61 Aligned_cols=129 Identities=19% Similarity=0.369 Sum_probs=88.4
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCC----
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCP---- 510 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p---- 510 (1196)
.+.+.|..++..++ +|...++...+|.|||...+.+...+.. .+ ..+|||+|. .|+.|..+.+..++.
T Consensus 79 ~pt~iQ~~~i~~il----~G~d~li~APTGsGKTl~~~~~al~~~~-~g--~~aLVl~PTreLa~Qi~~~l~~l~~~~~~ 151 (1638)
T PRK14701 79 EFWSIQKTWAKRIL----RGKSFSIVAPTGMGKSTFGAFIALFLAL-KG--KKCYIILPTTLLVKQTVEKIESFCEKANL 151 (1638)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEEcCCCCHHHHHHHHHHHHHh-cC--CeEEEEECHHHHHHHHHHHHHHHHhhcCC
Confidence 47899999998777 6778899999999999833222222221 11 368999995 567789999998764
Q ss_pred CCccccccCChhhHHH--HhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccC
Q 000994 511 DLKTLPYWGGLQERMV--LRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKS 578 (1196)
Q Consensus 511 ~l~v~~y~G~~~~r~~--l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn 578 (1196)
+.++..++|+...... ....+ ..+.++|+|+|.+.+......+...+++++|+||||.+-.
T Consensus 152 ~v~v~~~~g~~s~~e~~~~~~~l-------~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 152 DVRLVYYHSNLRKKEKEEFLERI-------ENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred ceeEEEEeCCCCHHHHHHHHHHH-------hcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccc
Confidence 3455667776433211 11111 1245889999999887654444446789999999999843
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.97 E-value=3.7e-07 Score=115.11 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=108.3
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
.+...|..++.+.+.++.+.|.-||||+......+.+..+|..+|+++..|.|.....+|..+...|+.. . ++++|
T Consensus 424 ~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-~---VtIAT 499 (896)
T PRK13104 424 LTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-A---VTIAT 499 (896)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-c---EEEec
Confidence 3567899999999999999999999999999999999999999999999999999999999999999874 2 68899
Q ss_pred CccccccCccc--------------------------------------CCEEEEeCCCCCcchHHHHHHhhhccCCCCc
Q 000994 1132 RAGGLGINLTA--------------------------------------ADTVIFYESDWNPTLDLQAMDRAHRLGQTKD 1173 (1196)
Q Consensus 1132 rAGGlGINLTa--------------------------------------AdtVIfyDsdWNPt~d~QAmdRahRiGQtK~ 1173 (1196)
..+|-|+++.= -=+||--+-.=|--+|.|.-||++|-|..-.
T Consensus 500 NmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGs 579 (896)
T PRK13104 500 NMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGS 579 (896)
T ss_pred cCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCc
Confidence 99999988652 2379999999999999999999999998765
Q ss_pred EEEE
Q 000994 1174 VSSW 1177 (1196)
Q Consensus 1174 VtVY 1177 (1196)
...|
T Consensus 580 s~f~ 583 (896)
T PRK13104 580 SRFY 583 (896)
T ss_pred eEEE
Confidence 5544
No 94
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.91 E-value=7.6e-08 Score=123.10 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=89.6
Q ss_pred CCeEEEEecchHHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEE
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNY---RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~---rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1196)
+.++|||..-...++.+.+.|.. .++..+.|.|+++.++|..++..|.. +..+| |+||..+..||++...++||-
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~-G~rkV-lVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ-GRRKV-VLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc-CCeEE-EEecchHhhcccccCceEEEE
Confidence 45799999999999999999976 47899999999999999999999965 44555 789999999999999999999
Q ss_pred eCCC----CCcch--------------HHHHHHhhhccCCCCcEEEEEeeeCCcH
Q 000994 1149 YESD----WNPTL--------------DLQAMDRAHRLGQTKDVSSWLKLCHLFI 1185 (1196)
Q Consensus 1149 yDsd----WNPt~--------------d~QAmdRahRiGQtK~VtVYRLIt~gTI 1185 (1196)
++.. +||.. -.|+.|||+| +++=++|||+++...
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR---~~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGR---LEPGVCYRLWSEEQH 338 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCC---CCCCEEEEeCCHHHH
Confidence 8754 56644 3465555555 578889999998754
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.88 E-value=3.6e-07 Score=114.64 Aligned_cols=120 Identities=17% Similarity=0.134 Sum_probs=102.4
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
+...|..+|.+.+.+....|..||||+......+.|...|...|+++..|.|.....++.-+...++. .- ++++|.
T Consensus 421 t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~--g~--VtIATn 496 (796)
T PRK12906 421 TLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR--GA--VTIATN 496 (796)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC--ce--EEEEec
Confidence 45679999999999988899999999999999999999999999999999999775455555555543 32 688999
Q ss_pred ccccccCcc---cCC-----EEEEeCCCCCcchHHHHHHhhhccCCCCcEEE
Q 000994 1133 AGGLGINLT---AAD-----TVIFYESDWNPTLDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1133 AGGlGINLT---aAd-----tVIfyDsdWNPt~d~QAmdRahRiGQtK~VtV 1176 (1196)
.+|-|+++. ... +||.++.+=|+.++.|+.||++|-|..-....
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~ 548 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 548 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE
Confidence 999999984 566 99999999999999999999999999765543
No 96
>KOG4284 consensus DEAD box protein [Transcription]
Probab=98.83 E-value=3.4e-08 Score=116.56 Aligned_cols=121 Identities=18% Similarity=0.204 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcccc
Q 000994 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1196)
Q Consensus 1057 KL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGl 1136 (1196)
|++.|-.++..+.= ...||||....-.+-+..+|...|+.+-.+.|.|...+|..+++.+.+ -.++| |+||.--+-
T Consensus 259 klq~L~~vf~~ipy--~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~-f~~rI-LVsTDLtaR 334 (980)
T KOG4284|consen 259 KLQKLTHVFKSIPY--VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA-FRVRI-LVSTDLTAR 334 (980)
T ss_pred HHHHHHHHHhhCch--HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh-ceEEE-EEecchhhc
Confidence 55555555555432 266899988888899999999999999999999999999999999975 34555 889999999
Q ss_pred ccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
||+-..+|-||.+|++-|......+||||+|+|-. -.+|- |++.+
T Consensus 335 GIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~-G~aVT-~~~~~ 379 (980)
T KOG4284|consen 335 GIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAH-GAAVT-LLEDE 379 (980)
T ss_pred cCCccccceEEecCCCcchHHHHHHhhhccccccc-ceeEE-Eeccc
Confidence 99999999999999999999999999999999964 34442 44443
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.82 E-value=3e-06 Score=106.75 Aligned_cols=121 Identities=18% Similarity=0.124 Sum_probs=107.3
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
.+.-.|..++.+-+.++.+.|..||||+.....-+.+..+|..+|+++..|.|.....+|..+...|+... ++++|
T Consensus 429 ~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIAT 504 (908)
T PRK13107 429 LTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIAT 504 (908)
T ss_pred eCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEec
Confidence 35678999999999999999999999999999999999999999999999999999999999999998733 58899
Q ss_pred CccccccCccc-------------------------------------CCEEEEeCCCCCcchHHHHHHhhhccCCCCcE
Q 000994 1132 RAGGLGINLTA-------------------------------------ADTVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1174 (1196)
Q Consensus 1132 rAGGlGINLTa-------------------------------------AdtVIfyDsdWNPt~d~QAmdRahRiGQtK~V 1174 (1196)
..+|-|+++.= -=+||.-+..=|--+|.|.-||++|-|..-..
T Consensus 505 nmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss 584 (908)
T PRK13107 505 NMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSS 584 (908)
T ss_pred CCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCce
Confidence 99999988642 23799999999999999999999999986554
Q ss_pred EE
Q 000994 1175 SS 1176 (1196)
Q Consensus 1175 tV 1176 (1196)
..
T Consensus 585 ~f 586 (908)
T PRK13107 585 RF 586 (908)
T ss_pred eE
Confidence 44
No 98
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.82 E-value=1.5e-06 Score=109.67 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=105.0
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
+...|+.+|..++.++...|..||||+......+.|..+|...|+++..|.|. ..+|...+..|...+ .-++++|.
T Consensus 411 t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~--g~VtIATN 486 (830)
T PRK12904 411 TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRP--GAVTIATN 486 (830)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCC--ceEEEecc
Confidence 55689999999999988899999999999999999999999999999999995 679999999997633 34588999
Q ss_pred ccccccCccc--------------------------------------CCEEEEeCCCCCcchHHHHHHhhhccCCCCcE
Q 000994 1133 AGGLGINLTA--------------------------------------ADTVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1174 (1196)
Q Consensus 1133 AGGlGINLTa--------------------------------------AdtVIfyDsdWNPt~d~QAmdRahRiGQtK~V 1174 (1196)
.+|-|+++.- -=|||.-+..=|--+|.|.-||++|-|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 9999988542 34799999889999999999999999997665
Q ss_pred EEE
Q 000994 1175 SSW 1177 (1196)
Q Consensus 1175 tVY 1177 (1196)
..|
T Consensus 567 ~f~ 569 (830)
T PRK12904 567 RFY 569 (830)
T ss_pred eEE
Confidence 554
No 99
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.79 E-value=1.3e-06 Score=112.01 Aligned_cols=114 Identities=12% Similarity=0.126 Sum_probs=90.0
Q ss_pred CCCeEEEEecchHHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEE
Q 000994 1071 ENHRVLLFAQMTKMLNILEDYMNY---RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVI 1147 (1196)
Q Consensus 1071 ~ghKVLIFSQ~t~mlDlLee~L~~---rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVI 1147 (1196)
.+..||||..-...++.+.+.|.. .++..+.|.|+++.++|+.++..|.. +.. -+|++|..+..||++...++||
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~-G~r-kVlvATnIAErsLtIp~V~~VI 288 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA-GRR-KVVLATNIAETSLTIEGIRLVV 288 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC-CCe-EEEEecchHHhcccccCceEEE
Confidence 356899999999999999999986 57889999999999999999999864 344 4588999999999999999999
Q ss_pred EeCCC----CCcch-----------HHHHHHhhhccCCCCcEEEEEeeeCCcHH
Q 000994 1148 FYESD----WNPTL-----------DLQAMDRAHRLGQTKDVSSWLKLCHLFIF 1186 (1196)
Q Consensus 1148 fyDsd----WNPt~-----------d~QAmdRahRiGQtK~VtVYRLIt~gTIE 1186 (1196)
-++.. ++|.. -.+|+-|++|-|.+++=++|||+++...+
T Consensus 289 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 289 DSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAE 342 (812)
T ss_pred ECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHh
Confidence 86543 44432 12444455555555789999999988664
No 100
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=98.77 E-value=2.1e-07 Score=107.90 Aligned_cols=114 Identities=18% Similarity=0.314 Sum_probs=101.4
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
.++..|..+|++.... .||+||+.--.+.+++.+.|.+..+++.-|.|..++..|.....+|.... ..+|+.|..++
T Consensus 315 ~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kae--sgIL~cTDVaA 391 (543)
T KOG0342|consen 315 SRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAE--SGILVCTDVAA 391 (543)
T ss_pred chHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcc--cceEEecchhh
Confidence 3467788888887654 89999999999999999999999999999999999999999999997632 34588889999
Q ss_pred cccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCC
Q 000994 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK 1172 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK 1172 (1196)
-|++..+.|-||-|||+=||.....++||..|-|-+-
T Consensus 392 RGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G 428 (543)
T KOG0342|consen 392 RGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEG 428 (543)
T ss_pred ccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCc
Confidence 9999999999999999999999999999999977653
No 101
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=98.75 E-value=5.5e-07 Score=105.30 Aligned_cols=129 Identities=17% Similarity=0.185 Sum_probs=102.9
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR--KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~r--g~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrA 1133 (1196)
-|+.+|-..+.... ..|.|||...-+-...+.+.+... |+..+-|.|.+++..|.++..+|.. .-.++|.+|..
T Consensus 299 ~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~--~~~~vLF~TDv 374 (758)
T KOG0343|consen 299 DKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR--KRAVVLFCTDV 374 (758)
T ss_pred hHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH--hcceEEEeehh
Confidence 46666666666544 348999998888888888777653 8999999999999999999999976 34578999999
Q ss_pred cccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhc
Q 000994 1134 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGN 1191 (1196)
Q Consensus 1134 GGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~ 1191 (1196)
++-||++.+.|-||-||-+=+-.....+.||.-|.+-.-...+| ++. +-||.|+.
T Consensus 375 ~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~--L~p-sEeE~~l~ 429 (758)
T KOG0343|consen 375 AARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLM--LTP-SEEEAMLK 429 (758)
T ss_pred hhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEE--Ecc-hhHHHHHH
Confidence 99999999999999999998888888999998888776665553 333 33455554
No 102
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.70 E-value=1.3e-06 Score=111.44 Aligned_cols=158 Identities=20% Similarity=0.266 Sum_probs=105.6
Q ss_pred hccCcHHHHHHHHHHHHhhhcCCC--eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHH-HHHHHHHhCC
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQGLN--GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNN-WADEISRFCP 510 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~~g--gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~n-W~~Ei~k~~p 510 (1196)
...--|-|+.+++-...-..++.- =++|-++|.|||=.|+-.+-..... + +-+.|+||..+|.+ -.+-|..-+-
T Consensus 592 PyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-G--KQVAvLVPTTlLA~QHy~tFkeRF~ 668 (1139)
T COG1197 592 PYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-G--KQVAVLVPTTLLAQQHYETFKERFA 668 (1139)
T ss_pred CCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-C--CeEEEEcccHHhHHHHHHHHHHHhc
Confidence 345678899999999887776654 3899999999999887443222212 1 57899999998764 4444543332
Q ss_pred CCcccc----ccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHH
Q 000994 511 DLKTLP----YWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKT 586 (1196)
Q Consensus 511 ~l~v~~----y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~ka 586 (1196)
++.|-+ -.-+.++...+.+.+ ..+..||||-|+..+.++.++- +-.+||+||=|++.-. .-..
T Consensus 669 ~fPV~I~~LSRF~s~kE~~~il~~l-------a~G~vDIvIGTHrLL~kdv~Fk---dLGLlIIDEEqRFGVk---~KEk 735 (1139)
T COG1197 669 GFPVRIEVLSRFRSAKEQKEILKGL-------AEGKVDIVIGTHRLLSKDVKFK---DLGLLIIDEEQRFGVK---HKEK 735 (1139)
T ss_pred CCCeeEEEecccCCHHHHHHHHHHH-------hcCCccEEEechHhhCCCcEEe---cCCeEEEechhhcCcc---HHHH
Confidence 333322 222333433333332 2478899999999998876542 4589999999998543 3455
Q ss_pred HHhccc-cceEEeecCCCCCCh
Q 000994 587 LLSFNC-RNRLLLTGTPIQNNM 607 (1196)
Q Consensus 587 l~~l~~-~~RllLTGTPiqN~l 607 (1196)
++++++ -+.|-||||||..++
T Consensus 736 LK~Lr~~VDvLTLSATPIPRTL 757 (1139)
T COG1197 736 LKELRANVDVLTLSATPIPRTL 757 (1139)
T ss_pred HHHHhccCcEEEeeCCCCcchH
Confidence 666654 478899999987553
No 103
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.69 E-value=9.4e-07 Score=102.37 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=107.8
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
--||..|.+.|.+.-.+| +||||..=....+-|..-|...+|++..|.|++.+.+|.+.+.+|.. ..+-| |.-|...
T Consensus 452 ~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKk-k~~~V-lvatDva 528 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKK-KRKPV-LVATDVA 528 (731)
T ss_pred HHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhh-cCCce-EEEeeHh
Confidence 457777777777766554 89999988888999999999999999999999999999999999976 44556 5557999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHH
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIF 1186 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIE 1186 (1196)
..|+++..--|||.||---.-.+-.|++||.+|-|-+ -..|.|||..-.|
T Consensus 529 argldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 529 ARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred hcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 9999999999999999877777778999999999987 5678999876555
No 104
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.68 E-value=6e-07 Score=105.41 Aligned_cols=107 Identities=18% Similarity=0.256 Sum_probs=94.3
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEE----e
Q 000994 1074 RVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF----Y 1149 (1196)
Q Consensus 1074 KVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf----y 1149 (1196)
..|||+...+-...|..+|+.+|++..-+.+..+..+|+.+=.+|+. .++-+ +++|.|.|.|+++. |+.||| +
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~-q~l~~-VVTTAAL~AGVDFP-ASQVIFEsLaM 518 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA-QELAA-VVTTAALAAGVDFP-ASQVIFESLAM 518 (830)
T ss_pred ceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc-CCcce-EeehhhhhcCCCCc-hHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999986 56655 67889999999987 467777 4
Q ss_pred CCCC-CcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1150 ESDW-NPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1150 DsdW-NPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
--+| +|.--+|-.|||+|.|-.-.-.||-++-.|
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 5566 999999999999999998888888888664
No 105
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.64 E-value=1.2e-06 Score=101.63 Aligned_cols=113 Identities=24% Similarity=0.336 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcccccc
Q 000994 1059 QTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGI 1138 (1196)
Q Consensus 1059 ~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGI 1138 (1196)
..|..|+.++. ..+++||.+-.+...-|.-.|-..|++..-|.|+.++++|-+.+..|.. .+|-| |++|..++-||
T Consensus 415 a~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~-~eidv-LiaTDvAsRGL 490 (691)
T KOG0338|consen 415 AMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK-EEIDV-LIATDVASRGL 490 (691)
T ss_pred HHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh-ccCCE-EEEechhhccC
Confidence 45666777766 4599999999999999999999999999999999999999999999975 66655 78899999999
Q ss_pred CcccCCEEEEeCCCCCcchHHHHHHhhhccCCC-CcEE
Q 000994 1139 NLTAADTVIFYESDWNPTLDLQAMDRAHRLGQT-KDVS 1175 (1196)
Q Consensus 1139 NLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQt-K~Vt 1175 (1196)
++...-|||.|+.+-.--+...++||.-|-|.. +-|+
T Consensus 491 DI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVt 528 (691)
T KOG0338|consen 491 DIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVT 528 (691)
T ss_pred CccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEE
Confidence 999999999999998888888999888887763 3444
No 106
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=98.63 E-value=1.4e-07 Score=109.61 Aligned_cols=126 Identities=21% Similarity=0.328 Sum_probs=111.2
Q ss_pred ccccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHcc-CCCceEEEE
Q 000994 1051 LLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLL 1129 (1196)
Q Consensus 1051 li~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~-~~di~VfLL 1129 (1196)
+++++.|..+|.++|... ..-.+|||....+..|.|.+-|...||++++|.|+-++++|..++.+|.+ ..+| |+
T Consensus 498 m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dI---lV 572 (673)
T KOG0333|consen 498 MVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDI---LV 572 (673)
T ss_pred EecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCE---EE
Confidence 367789999999999887 45699999999999999999999999999999999999999999999987 3443 55
Q ss_pred ecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1130 STRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1130 STrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
.|.++|-||+....++||.||..-+-.....+|||.+|-||.-.++- |+|..
T Consensus 573 aTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS--flt~~ 624 (673)
T KOG0333|consen 573 ATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS--FLTPA 624 (673)
T ss_pred EecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE--Eeccc
Confidence 78999999999999999999999898899999999999999875544 45443
No 107
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.7e-07 Score=101.67 Aligned_cols=123 Identities=20% Similarity=0.295 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcccc
Q 000994 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1196)
Q Consensus 1057 KL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGl 1136 (1196)
|+..|..|-..|-- ...+||+.-.+..|.|.+-|...++.+.-+.|.+++++|.+++.+|.+ +.-+| |++|..=+-
T Consensus 253 KfdtLcdLYd~LtI--tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs-g~Srv-LitTDVwaR 328 (400)
T KOG0328|consen 253 KFDTLCDLYDTLTI--TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS-GKSRV-LITTDVWAR 328 (400)
T ss_pred hHhHHHHHhhhheh--heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc-CCceE-EEEechhhc
Confidence 78888888777643 378999999999999999999999999999999999999999999987 44555 789999999
Q ss_pred ccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcH
Q 000994 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFI 1185 (1196)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTI 1185 (1196)
||+.+..+.||.||.+-|+.....+|||.+|+|.+- .+..|+...-+
T Consensus 329 GiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d~ 375 (400)
T KOG0328|consen 329 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDDL 375 (400)
T ss_pred cCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHHH
Confidence 999999999999999999999999999999999864 33456655443
No 108
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.58 E-value=1.3e-05 Score=89.78 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=106.5
Q ss_pred hhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHHhCCC
Q 000994 433 FKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPD 511 (1196)
Q Consensus 433 l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k~~p~ 511 (1196)
-.++|-|+|..+-+-++..+.+...-|+-.-+|.|||=+....+......+ +.+.|..| ..+...-...++.-+++
T Consensus 94 W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~aF~~ 170 (441)
T COG4098 94 WKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQAFSN 170 (441)
T ss_pred eccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC---CeEEEecCcccchHHHHHHHHHhhcc
Confidence 358999999999999999999998899999999999999888887776654 67889999 45566666777777777
Q ss_pred CccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCccc-HHHHHHHhc
Q 000994 512 LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNS-IRWKTLLSF 590 (1196)
Q Consensus 512 l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S-~~~kal~~l 590 (1196)
..+...+|...... ...-||-||++.++-.. .||++|+||+..+-=..- .+..++..-
T Consensus 171 ~~I~~Lyg~S~~~f---------------r~plvVaTtHQLlrFk~------aFD~liIDEVDAFP~~~d~~L~~Av~~a 229 (441)
T COG4098 171 CDIDLLYGDSDSYF---------------RAPLVVATTHQLLRFKQ------AFDLLIIDEVDAFPFSDDQSLQYAVKKA 229 (441)
T ss_pred CCeeeEecCCchhc---------------cccEEEEehHHHHHHHh------hccEEEEeccccccccCCHHHHHHHHHh
Confidence 77877777543321 11236667777664322 589999999998833222 233344332
Q ss_pred --cccceEEeecCCC
Q 000994 591 --NCRNRLLLTGTPI 603 (1196)
Q Consensus 591 --~~~~RllLTGTPi 603 (1196)
.-...+.|||||-
T Consensus 230 rk~~g~~IylTATp~ 244 (441)
T COG4098 230 RKKEGATIYLTATPT 244 (441)
T ss_pred hcccCceEEEecCCh
Confidence 3456799999983
No 109
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.53 E-value=1.4e-05 Score=105.19 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=85.5
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCc---EEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEE
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYR---YLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~---y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1196)
+..||||..-...++.+.+.|...+++ .+-|.|+.+.++|..+... .+..+ +|++|..+..||++...++||-
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~---~g~rk-IIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS---HSGRR-IVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc---cCCee-EEEeccHHhhccccCcceEEEE
Confidence 468999999999999999999988765 5678999999999987664 23444 5889999999999999999998
Q ss_pred eC----CCC-----------CcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHH
Q 000994 1149 YE----SDW-----------NPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFS 1187 (1196)
Q Consensus 1149 yD----sdW-----------NPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEE 1187 (1196)
++ +-+ .|..-.+|+-|++|.|-+++=.+|||+++...+.
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS 415 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHh
Confidence 74 122 2322234555555555557888999999876543
No 110
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.50 E-value=3.9e-06 Score=105.48 Aligned_cols=124 Identities=17% Similarity=0.232 Sum_probs=100.8
Q ss_pred cccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCc
Q 000994 1054 DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrA 1133 (1196)
.+.|+..|++||.+... .-++|||++--.-.|.|-.-|...||.++-|.|..+..+|...+++|.+ +...+|+-|..
T Consensus 596 e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~--~~~~LLvaTsv 672 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN--GVVNLLVATSV 672 (997)
T ss_pred chHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc--cCceEEEehhh
Confidence 36799999999998766 7799999999999999999999999999999999999999999999976 55677888999
Q ss_pred cccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeC
Q 000994 1134 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCH 1182 (1196)
Q Consensus 1134 GGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~ 1182 (1196)
.+-||+...-..||.||-+=--.....+.||..|-|-+- .-|-||+.
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999999999998432233444444444444444 45566666
No 111
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.46 E-value=1.7e-05 Score=99.17 Aligned_cols=151 Identities=19% Similarity=0.221 Sum_probs=92.8
Q ss_pred hhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc-------CCcEEEEeC-CccHHHHHHHHH-HhCC-CCccccccCC
Q 000994 451 CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-------WGPFLVVAP-ASVLNNWADEIS-RFCP-DLKTLPYWGG 520 (1196)
Q Consensus 451 ~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~-------~gp~LIV~P-~sll~nW~~Ei~-k~~p-~l~v~~y~G~ 520 (1196)
.|+.+.|.|++..+|.|||..+.-.|..+...+.. .-.++.|+| ++|...-.+.+. ++.| +++|..+.|+
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD 201 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGD 201 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCc
Confidence 46788899999999999999886665555543211 136889999 455433333322 2222 6788889886
Q ss_pred hhhHHHHhhccCcccccccCCCceEEEEehhhHH-------hcHhhhhccCccEEEECCCccccCcccHH-----HHHHH
Q 000994 521 LQERMVLRKNINPKRLYRRDAGFHILITSYQLLV-------ADEKYFRRVKWQYMVLDEAQAIKSSNSIR-----WKTLL 588 (1196)
Q Consensus 521 ~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~-------~d~~~l~~~~w~~VIlDEAH~iKn~~S~~-----~kal~ 588 (1196)
..-... .....+|+|||.+.+- .+...+. ...+||+||+|.+....... ++.++
T Consensus 202 ~ql~~t------------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr 267 (1230)
T KOG0952|consen 202 TQLTKT------------EIADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLETIVARTLR 267 (1230)
T ss_pred chhhHH------------HHHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccchHHHHHHHHHH
Confidence 432211 1245679999988761 1222222 35789999999998865543 33332
Q ss_pred h----ccccceEEeecCCCCCChHHHHHHHHhhCCC
Q 000994 589 S----FNCRNRLLLTGTPIQNNMAELWALLHFIMPT 620 (1196)
Q Consensus 589 ~----l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~ 620 (1196)
. ...-+.++||||-- |..| +-+||...
T Consensus 268 ~vessqs~IRivgLSATlP--N~eD---vA~fL~vn 298 (1230)
T KOG0952|consen 268 LVESSQSMIRIVGLSATLP--NYED---VARFLRVN 298 (1230)
T ss_pred HHHhhhhheEEEEeeccCC--CHHH---HHHHhcCC
Confidence 2 23446689999942 3333 34565444
No 112
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.41 E-value=6e-06 Score=92.82 Aligned_cols=232 Identities=16% Similarity=0.192 Sum_probs=141.1
Q ss_pred hccCcHHHHHHHHHHHHhhh------cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHH
Q 000994 434 KGSLKEYQLKGLQWLVNCYE------QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~------~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k 507 (1196)
.+.|=+-|+++|-+.....+ ++.|-+|+|.+|.||-.|+.++|......++. +++.|-+...|...=.+.+..
T Consensus 35 ~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 35 SGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK-RAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred cccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-ceEEEECChhhhhHHHHHHHH
Confidence 56899999999988877665 34566999999999999999998877655432 466666666676665555554
Q ss_pred hC-CCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh-------hhhc-cCc------cEEEECC
Q 000994 508 FC-PDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK-------YFRR-VKW------QYMVLDE 572 (1196)
Q Consensus 508 ~~-p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~-------~l~~-~~w------~~VIlDE 572 (1196)
.. ..+.+.+... +..... ......|+.+||.++..... .|.+ +.| .+||+||
T Consensus 114 IG~~~i~v~~l~~-----------~~~~~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDE 180 (303)
T PF13872_consen 114 IGADNIPVHPLNK-----------FKYGDI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDE 180 (303)
T ss_pred hCCCcccceechh-----------hccCcC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEecc
Confidence 43 2222322211 000000 11245699999999987631 2222 133 4789999
Q ss_pred CccccCccc------HHHHHHHhc----cccceEEeecCCCCCChHHHHHHHH--hhCC-CCCCCHHHHHHHHhhhcccc
Q 000994 573 AQAIKSSNS------IRWKTLLSF----NCRNRLLLTGTPIQNNMAELWALLH--FIMP-TLFDSHEQFNEWFSKGIESH 639 (1196)
Q Consensus 573 AH~iKn~~S------~~~kal~~l----~~~~RllLTGTPiqN~l~EL~sLL~--FL~P-~~f~s~~~F~~~f~~~ie~~ 639 (1196)
+|..||..+ ++..++..+ +.-+.+-.|||...+ +..|--+-+ +-.+ ..|.+..+|.+-+.+ +
T Consensus 181 cH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RLGLWG~gtpf~~~~~f~~a~~~----g 255 (303)
T PF13872_consen 181 CHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMAYMSRLGLWGPGTPFPDFDDFLEAMEK----G 255 (303)
T ss_pred chhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-CceeeeeeeccccCCCCCCCCHHHHHHHHHh----c
Confidence 999999765 566666555 334578899999743 222211111 1112 246666677665432 1
Q ss_pred cccCCCcchHHHHHHHHHHH--HHHHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHH
Q 000994 640 AEHGGTLNEHQLNRLHAILK--PFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQA 696 (1196)
Q Consensus 640 a~~~~~~~~~ql~rL~~ILk--pfmLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~ 696 (1196)
. ...++-+-|-|| ..+++|... .-.-...++.++||+.|..+|+.
T Consensus 256 G-------v~amE~vA~dlKa~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 256 G-------VGAMEMVAMDLKARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred C-------chHHHHHHHHHHhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 1 112333444443 557777432 23444567789999999999975
No 113
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.38 E-value=0.00058 Score=86.92 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=97.6
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
+...|..++.+-+.++.+.|.-|||-+.....-..|..+|...|+++-.|.-.-. +.=..+|++= +..-.+-++|.
T Consensus 549 t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~A---G~~g~VTIATN 624 (970)
T PRK12899 549 TEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAGA---GKLGAVTVATN 624 (970)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHhc---CCCCcEEEeec
Confidence 5568999999999999999999999999999999999999999999999987633 3333555553 33334577899
Q ss_pred ccccccCcccC--------CEEEEeCCCCCcchHHHHHHhhhccCCCCcEEE
Q 000994 1133 AGGLGINLTAA--------DTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1133 AGGlGINLTaA--------dtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtV 1176 (1196)
.+|-|-++.-. =+||.-...=|..+|.|..||++|-|..-....
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f 676 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKF 676 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeE
Confidence 99999775432 379999999999999999999999998765444
No 114
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.37 E-value=9.5e-06 Score=104.23 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=93.3
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCC
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1196)
+.-.||||...++.+.+..+|...|++..-+..++...+|+.+-.+|.. .++.| ++-|=|-|.|||=...--||+|..
T Consensus 485 ~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~-~~~~V-ivATVAFGMGIdK~DVR~ViH~~l 562 (941)
T KOG0351|consen 485 DQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMS-DKIRV-IVATVAFGMGIDKPDVRFVIHYSL 562 (941)
T ss_pred CCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhc-CCCeE-EEEEeeccCCCCCCceeEEEECCC
Confidence 4567999999999999999999999999999999999999999999998 45766 455689999999999999999998
Q ss_pred CCCcchHHHHHHhhhccCCCCcEEEEE
Q 000994 1152 DWNPTLDLQAMDRAHRLGQTKDVSSWL 1178 (1196)
Q Consensus 1152 dWNPt~d~QAmdRahRiGQtK~VtVYR 1178 (1196)
+=+---.-|..|||+|.|+-.....|.
T Consensus 563 Pks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 563 PKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred chhHHHHHHhccccCcCCCcceeEEec
Confidence 877778889999999999987766543
No 115
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.37 E-value=3e-06 Score=106.98 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=107.5
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
.+++..|...|..+...|.+||||+.-....+.|.++|...|+++..+.|.++..+|..++.+|.. +.+. +|++|...
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~-g~i~-vlV~t~~L 506 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFD-VLVGINLL 506 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc-CCce-EEEEeCHH
Confidence 577888888888888899999999999999999999999999999999999999999999999975 4554 46788999
Q ss_pred ccccCcccCCEEEEeCCC-----CCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1135 GLGINLTAADTVIFYESD-----WNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsd-----WNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
+.|+++..++.||++|.+ =++....|++||++| + +.-+|+-|++..
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR-~--~~G~~i~~~~~~ 557 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N--VNGKVILYADKI 557 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccC-C--CCCEEEEEecCC
Confidence 999999999999999974 377889999999999 4 234566677643
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.33 E-value=0.00039 Score=86.42 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=99.2
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
+...|+.++.+-+.++.+.|.-|||.++....-..|..+|...|+++-.|...-. ++=..+|++= +....+-++|.
T Consensus 408 t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A---G~~gaVTIATN 483 (764)
T PRK12326 408 TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA---GKYGAVTVSTQ 483 (764)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc---CCCCcEEEEec
Confidence 5568999999999999999999999999999999999999999999999987643 4445566654 33344577899
Q ss_pred ccccccCccc---------------CCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEE
Q 000994 1133 AGGLGINLTA---------------ADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSW 1177 (1196)
Q Consensus 1133 AGGlGINLTa---------------AdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVY 1177 (1196)
.+|-|-++.- -=+||--+..=|--+|.|..||++|-|..-....|
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 9999977552 23899998888999999999999999987655443
No 117
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.31 E-value=4e-05 Score=98.24 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=88.1
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHcc---CCCceEEEEecCccccccCcccCCEEEE
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH---RSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~---~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1196)
|-||+|-+.-..-.--+.+.|...+.+++-|.|..+..+|.+.+....+ ..+. .++++|.+--.|+++. .|.+|-
T Consensus 440 ~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~-~IvVaTQVIEagvDid-fd~mIT 517 (733)
T COG1203 440 GKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEG-FIVVATQVIEAGVDID-FDVLIT 517 (733)
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCC-eEEEEeeEEEEEeccc-cCeeee
Confidence 5688888877777777777777777789999999999999998886653 2334 4488999999999987 565553
Q ss_pred eCCCCCc-chHHHHHHhhhccC--CCCcEEEEEeeeCCcHHHHHhc
Q 000994 1149 YESDWNP-TLDLQAMDRAHRLG--QTKDVSSWLKLCHLFIFSMIGN 1191 (1196)
Q Consensus 1149 yDsdWNP-t~d~QAmdRahRiG--QtK~VtVYRLIt~gTIEErIl~ 1191 (1196)
|+ .| ....||.||++|-| ....+.||-..-.+....+.+.
T Consensus 518 -e~--aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~ 560 (733)
T COG1203 518 -EL--APIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYE 560 (733)
T ss_pred -cC--CCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhh
Confidence 32 23 45689999999999 7788889888877776665543
No 118
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.30 E-value=5.7e-06 Score=104.04 Aligned_cols=125 Identities=21% Similarity=0.256 Sum_probs=107.4
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
.|++..|...|......|.+||||+.-.++.+.|.++|...|+++..+.|.++..+|.+++.+|.. +.+.| |++|...
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~-G~i~V-LV~t~~L 502 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL-GEFDV-LVGINLL 502 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc-CCceE-EEEcChh
Confidence 678888888888888899999999999999999999999999999999999999999999999965 45544 6788999
Q ss_pred ccccCcccCCEEEEeCCCC-----CcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1135 GLGINLTAADTVIFYESDW-----NPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdW-----NPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
+.|+++..++.||++|.+. +.....|.+||++|.+ .-.|+-++...|
T Consensus 503 ~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~ 554 (655)
T TIGR00631 503 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKIT 554 (655)
T ss_pred cCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCC
Confidence 9999999999999999643 6677889999999973 234666666655
No 119
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.26 E-value=1.1e-06 Score=96.76 Aligned_cols=117 Identities=18% Similarity=0.329 Sum_probs=108.1
Q ss_pred ccccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEe
Q 000994 1051 LLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLS 1130 (1196)
Q Consensus 1051 li~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLS 1130 (1196)
++.++-|+.-|..|+.+|.-+ ..||||..+.-..+|..-.+..||.+..+...+..++|....++|.+ +.|+.+++|
T Consensus 303 fV~e~qKvhCLntLfskLqIN--QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~-G~crnLVct 379 (459)
T KOG0326|consen 303 FVEERQKVHCLNTLFSKLQIN--QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN-GKCRNLVCT 379 (459)
T ss_pred eechhhhhhhHHHHHHHhccc--ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc-cccceeeeh
Confidence 478899999999999998654 78999999999999999999999999999999999999999999976 778886554
Q ss_pred cCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCC
Q 000994 1131 TRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQT 1171 (1196)
Q Consensus 1131 TrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQt 1171 (1196)
.----||+.++.|.||.||-+-|+.....++||++|+|--
T Consensus 380 -DL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 380 -DLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred -hhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 8888999999999999999999999999999999999964
No 120
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.19 E-value=0.00023 Score=91.15 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=36.0
Q ss_pred ccccHHHHHHHHHHHHhhC---------CCeEEEEecchHHHHHHHHHHHh
Q 000994 1053 TDSGKLQTLDILLKRLRAE---------NHRVLLFAQMTKMLNILEDYMNY 1094 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~---------ghKVLIFSQ~t~mlDlLee~L~~ 1094 (1196)
...+|+.+|.++|.+...+ +.+||||++..++...|.+||..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 4588999999999886543 47899999999999999999966
No 121
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.12 E-value=5.1e-06 Score=94.17 Aligned_cols=126 Identities=22% Similarity=0.324 Sum_probs=108.6
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
+++-|+.....++..+ ..++|||||.--.-|.|-|..-|...|+..--|.|...+.||+..+++|.+ +.++| |+.|.
T Consensus 447 ~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks-G~vrI-LvaTD 523 (629)
T KOG0336|consen 447 TDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS-GEVRI-LVATD 523 (629)
T ss_pred ccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc-CceEE-EEEec
Confidence 6788887666665554 568999999999999999999999999999999999999999999999986 67776 67789
Q ss_pred ccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1133 AGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1133 AGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
.++-||++....||+.||-+-|-.....++||.+|-|.|-. -.-|++.+
T Consensus 524 laSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~--sis~lt~~ 572 (629)
T KOG0336|consen 524 LASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT--SISFLTRN 572 (629)
T ss_pred hhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc--eEEEEehh
Confidence 99999999999999999999999999999999999987653 23355554
No 122
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.11 E-value=1.3e-05 Score=90.37 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=98.8
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
..|.++|.. |..+..-| ..|||++-.+....|...|...||.+..|.|....++|.+++.+|.. +.-+| |+.|...
T Consensus 315 ~~K~~~l~~-lyg~~tig-qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~-g~~kV-LitTnV~ 390 (477)
T KOG0332|consen 315 DDKYQALVN-LYGLLTIG-QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE-GKEKV-LITTNVC 390 (477)
T ss_pred hhHHHHHHH-HHhhhhhh-heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc-CcceE-EEEechh
Confidence 468999988 44444433 67899999999999999999999999999999999999999999976 44445 8899999
Q ss_pred ccccCcccCCEEEEeCCCC------CcchHHHHHHhhhccCCCC
Q 000994 1135 GLGINLTAADTVIFYESDW------NPTLDLQAMDRAHRLGQTK 1172 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdW------NPt~d~QAmdRahRiGQtK 1172 (1196)
+-||+....+-||.||.+- .|.....+|||.+|+|.+-
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG 434 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG 434 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc
Confidence 9999999999999999875 5678899999999999764
No 123
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.11 E-value=1e-05 Score=103.26 Aligned_cols=193 Identities=16% Similarity=0.225 Sum_probs=120.7
Q ss_pred cHHHHHHHHHHHHhhhc----------------------------------CCCeEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 438 KEYQLKGLQWLVNCYEQ----------------------------------GLNGILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 438 rpyQl~gl~wL~~~~~~----------------------------------~~ggILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
.|||.++|..++..+.. ..+.-+..++|.|||.+++..|..+....
T Consensus 8 l~hQ~~av~ai~~~F~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~ 87 (986)
T PRK15483 8 LPHQEQALAAILAAFTGIDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYELHQKY 87 (986)
T ss_pred ChhHHHHHHHHHHHhcCCCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999888766531 13567899999999999999999998776
Q ss_pred ccCCcEEEEeCCccHH-HHHHH---------HHHhCCC--CccccccCCh---hhH----HHHhhccCcccccccCCCce
Q 000994 484 NIWGPFLVVAPASVLN-NWADE---------ISRFCPD--LKTLPYWGGL---QER----MVLRKNINPKRLYRRDAGFH 544 (1196)
Q Consensus 484 ~~~gp~LIV~P~sll~-nW~~E---------i~k~~p~--l~v~~y~G~~---~~r----~~l~~~~~~~~~~~~~~~~~ 544 (1196)
+. ..+|||||..-+. ...+- |...+++ ..+.+|.... ..| ..++.+..... .......
T Consensus 88 ~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~--~~~~~I~ 164 (986)
T PRK15483 88 GL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASR--QNSNTIH 164 (986)
T ss_pred CC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccc--cCCCceE
Confidence 54 7899999974332 22222 2222222 4455565432 111 11122111000 0112578
Q ss_pred EEEEehhhHHhcHh------hh--hc--cCc-------cEEEECCCccccCcccHHHHHHHhccccceEEeecCCCC---
Q 000994 545 ILITSYQLLVADEK------YF--RR--VKW-------QYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQ--- 604 (1196)
Q Consensus 545 VvItSYe~l~~d~~------~l--~~--~~w-------~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiq--- 604 (1196)
|+|+|-+.+.++.. .+ .. ..| -.||+||+|++.. ..+.|.++..++..+.|.-|||--.
T Consensus 165 Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~~~~~ 243 (986)
T PRK15483 165 VLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFPDITE 243 (986)
T ss_pred EEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecCCccc
Confidence 99999998866421 01 11 223 3799999999965 3468899999999999999999744
Q ss_pred ----CC--hHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccc
Q 000994 605 ----NN--MAELWALLHFIMPTLFDSHEQFNEWFSKGIESH 639 (1196)
Q Consensus 605 ----N~--l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~ 639 (1196)
|. ..+++.|+. .+++.+.|+....+.|+-.
T Consensus 244 ~~g~~~~~~~d~~NlvY-----~LdavdAyn~~LVK~I~V~ 279 (986)
T PRK15483 244 GKGKNKCTRKDYYNLQF-----DLNAVDSFNDGLVKGVDIF 279 (986)
T ss_pred cccccccccccccCcee-----ecCHHHHHHhCCcceEEEe
Confidence 11 112343333 2466777888777777653
No 124
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.02 E-value=1.9e-05 Score=89.13 Aligned_cols=130 Identities=18% Similarity=0.211 Sum_probs=108.0
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
-.|+..|.+. |.+..-.||||+.-..-.|-|-+||-..|+..+-+.|.-..++|...|..|.. +-+-.|+.|..+
T Consensus 407 EaKiVylLeC---LQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~--gkKDVLVATDVA 481 (610)
T KOG0341|consen 407 EAKIVYLLEC---LQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRA--GKKDVLVATDVA 481 (610)
T ss_pred hhhhhhHHHH---hccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhc--CCCceEEEecch
Confidence 4565555444 45557799999999999999999999999999999999999999999999986 223447788999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhc
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGN 1191 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~ 1191 (1196)
+-|+++.+-.|||.||.+=.-.+...+|||.+|-|.|-=.|- ||-+++-|.-+++
T Consensus 482 SKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATT--fINK~~~esvLlD 536 (610)
T KOG0341|consen 482 SKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATT--FINKNQEESVLLD 536 (610)
T ss_pred hccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeee--eecccchHHHHHH
Confidence 999999999999999998888888899999999998875554 7777776655443
No 125
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.95 E-value=6.4e-05 Score=95.55 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=107.5
Q ss_pred CCCCCccccc--ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHcc
Q 000994 1043 MQSFDPAKLL--TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH 1120 (1196)
Q Consensus 1043 ~~~~d~~~li--~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~ 1120 (1196)
+.+.|....+ +...|+.+|..++.++...|..||||+......+.|..+|...|+++..|++ +..+|...+-.|..
T Consensus 567 ~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG 644 (1025)
T PRK12900 567 IVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAG 644 (1025)
T ss_pred cceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcC
Confidence 3344444333 4557999999999999999999999999999999999999999999999997 56799999999975
Q ss_pred CCCceEEEEecCccccccCcccCC--------EEEEeCCCCCcchHHHHHHhhhccCCCCcE
Q 000994 1121 RSDIFVFLLSTRAGGLGINLTAAD--------TVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1174 (1196)
Q Consensus 1121 ~~di~VfLLSTrAGGlGINLTaAd--------tVIfyDsdWNPt~d~QAmdRahRiGQtK~V 1174 (1196)
. ..-++++|..+|-|+++.-.+ +||.++.+=+.-++.|+.||++|-|..-..
T Consensus 645 ~--~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 645 Q--KGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred C--CCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 3 335688999999999988444 348889999999999999999999987654
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.93 E-value=0.0049 Score=78.64 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=98.0
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
.+...|..++.+-+.++.+.|.-|||-+.....-..|..+|..+|+++-.|.-.-. ++=.++|++= +..-.+-++|
T Consensus 429 ~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~A---G~~GaVTIAT 504 (913)
T PRK13103 429 LTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQA---GRPGALTIAT 504 (913)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHcC---CCCCcEEEec
Confidence 35678999999999999999999999999999999999999999999987776533 3334555543 3333456789
Q ss_pred CccccccCcc-------------------------------------cCCEEEEeCCCCCcchHHHHHHhhhccCCCCcE
Q 000994 1132 RAGGLGINLT-------------------------------------AADTVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1174 (1196)
Q Consensus 1132 rAGGlGINLT-------------------------------------aAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~V 1174 (1196)
..+|-|-++. .-=+||--+..=|--+|.|.-||++|-|..-..
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999997753 223799999999999999999999999987655
Q ss_pred EEE
Q 000994 1175 SSW 1177 (1196)
Q Consensus 1175 tVY 1177 (1196)
..|
T Consensus 585 ~f~ 587 (913)
T PRK13103 585 RFY 587 (913)
T ss_pred EEE
Confidence 443
No 127
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.88 E-value=0.0017 Score=74.79 Aligned_cols=101 Identities=14% Similarity=0.192 Sum_probs=87.4
Q ss_pred EEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCCCCCc
Q 000994 1076 LLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNP 1155 (1196)
Q Consensus 1076 LIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNP 1155 (1196)
|||+--..-..-|.-.|..+|+..+-+....+..+|...-++|.. .++-| +.-|-+-|.|++=...--||+.|+.-|-
T Consensus 259 IVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~-~~~Pv-I~AT~SFGMGVDKp~VRFViHW~~~qn~ 336 (641)
T KOG0352|consen 259 IVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMN-NEIPV-IAATVSFGMGVDKPDVRFVIHWSPSQNL 336 (641)
T ss_pred EEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhc-CCCCE-EEEEeccccccCCcceeEEEecCchhhh
Confidence 788877777778888889999999999999999999999999987 56666 5567889999999999999999999999
Q ss_pred chHHHHHHhhhccCCCCcEEEEE
Q 000994 1156 TLDLQAMDRAHRLGQTKDVSSWL 1178 (1196)
Q Consensus 1156 t~d~QAmdRahRiGQtK~VtVYR 1178 (1196)
+-.-|--|||+|-|-.--+..|+
T Consensus 337 AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 337 AGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred HHHHHhccccccCCCccceeeee
Confidence 99999999999999877666654
No 128
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.85 E-value=0.003 Score=79.73 Aligned_cols=155 Identities=16% Similarity=0.152 Sum_probs=105.8
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHHhCCCCc
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPDLK 513 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k~~p~l~ 513 (1196)
..|-+-|..++.-+..........+|.--+|.|||=.-+.++......+ +.+||++| -++..|-.+.|...++ .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 3688899999998887652223458999999999988888888777654 57899999 6788897777776665 78
Q ss_pred cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCcc--ccCcccHHHHH--H--
Q 000994 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQA--IKSSNSIRWKT--L-- 587 (1196)
Q Consensus 514 v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~--iKn~~S~~~ka--l-- 587 (1196)
+.++|..-...... ..|... ..+...|||-|-..+..--+ +-.+||+||=|. .|..+..++.+ +
T Consensus 273 v~vlHS~Ls~~er~-~~W~~~----~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sYKq~~~prYhARdvA~ 342 (730)
T COG1198 273 VAVLHSGLSPGERY-RVWRRA----RRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSYKQEDGPRYHARDVAV 342 (730)
T ss_pred hhhhcccCChHHHH-HHHHHH----hcCCceEEEEechhhcCchh-----hccEEEEeccccccccCCcCCCcCHHHHHH
Confidence 88888764433321 112111 13677899999888765443 347899999994 45555433221 1
Q ss_pred -Hh-ccccceEEeecCCC
Q 000994 588 -LS-FNCRNRLLLTGTPI 603 (1196)
Q Consensus 588 -~~-l~~~~RllLTGTPi 603 (1196)
+. ...--.++-|+||-
T Consensus 343 ~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 343 LRAKKENAPVVLGSATPS 360 (730)
T ss_pred HHHHHhCCCEEEecCCCC
Confidence 11 23334588899994
No 129
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.85 E-value=6.2e-05 Score=84.72 Aligned_cols=139 Identities=18% Similarity=0.224 Sum_probs=115.1
Q ss_pred cccccHHHHHHHHHHHHhh-CCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEe
Q 000994 1052 LTDSGKLQTLDILLKRLRA-ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLS 1130 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~-~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLS 1130 (1196)
+...+|-.+|..+|..... +..-++||.|-++...+|.-.|...++...-|.+.+++.+|-..+.+|.. ..++| |+.
T Consensus 233 ~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs-~~~~i-lia 310 (442)
T KOG0340|consen 233 VSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRS-NAARI-LIA 310 (442)
T ss_pred cchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhh-cCccE-EEE
Confidence 4557899999999999987 57789999999999999999999999999999999999999999999987 45556 677
Q ss_pred cCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCc----EEEEEeeeCCcHHHHHhcc
Q 000994 1131 TRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKD----VSSWLKLCHLFIFSMIGNG 1192 (1196)
Q Consensus 1131 TrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~----VtVYRLIt~gTIEErIl~~ 1192 (1196)
|..++-|++....+-||.||.+-.|-....+.||.-|-|..-. ||=+.+=--.-|||+|-+.
T Consensus 311 TDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 311 TDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred echhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999998777766432 1111111122377777544
No 130
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.76 E-value=0.00017 Score=72.92 Aligned_cols=130 Identities=19% Similarity=0.173 Sum_probs=69.3
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcc
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPK 534 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~ 534 (1196)
|.--+|---+|.|||-.++--+..-.-. ..+.+||+.|.-++. .|+.+...+..+. ++-+...+
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~rvLvL~PTRvva---~em~~aL~~~~~~-~~t~~~~~---------- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--RRLRVLVLAPTRVVA---EEMYEALKGLPVR-FHTNARMR---------- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--TT--EEEEESSHHHH---HHHHHHTTTSSEE-EESTTSS-----------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--ccCeEEEecccHHHH---HHHHHHHhcCCcc-cCceeeec----------
Confidence 3334677779999999887644332222 226899999987764 4555554443321 11110000
Q ss_pred cccccCCCceEEEEehhhHHhcH-hhhhccCccEEEECCCccccCcccHHHHHHH-hc--cc-cceEEeecCCCC
Q 000994 535 RLYRRDAGFHILITSYQLLVADE-KYFRRVKWQYMVLDEAQAIKSSNSIRWKTLL-SF--NC-RNRLLLTGTPIQ 604 (1196)
Q Consensus 535 ~~~~~~~~~~VvItSYe~l~~d~-~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~-~l--~~-~~RllLTGTPiq 604 (1196)
...++--|-+++|.++.... .......|++||+||+|.. ++.|...+-.. .+ .. ...+++||||-.
T Consensus 68 ---~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 68 ---THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp ------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred ---cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 01134457888988875532 1233468999999999974 55554443332 22 22 357899999953
No 131
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.71 E-value=0.00021 Score=85.41 Aligned_cols=121 Identities=22% Similarity=0.329 Sum_probs=102.1
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHH-HhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYM-NYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L-~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
..-||+.++.+++..... -.||||-|...-..-|-+.| .+.++..-.+.|.-+..+|...+++|.. +.|-| |+.|
T Consensus 370 se~~K~lA~rq~v~~g~~--PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~-g~Iwv-LicT 445 (593)
T KOG0344|consen 370 SEKGKLLALRQLVASGFK--PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI-GKIWV-LICT 445 (593)
T ss_pred cchhHHHHHHHHHhccCC--CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc-cCeeE-EEeh
Confidence 457999999998888643 48999999987777777777 8899999999999999999999999986 77877 6678
Q ss_pred CccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCC-CcEEEE
Q 000994 1132 RAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQT-KDVSSW 1177 (1196)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQt-K~VtVY 1177 (1196)
...+-||++..++.||.||-+=.-.....++||.+|-|+. +-+|.|
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 9999999999999999999976666677778888888875 445554
No 132
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.69 E-value=0.026 Score=71.74 Aligned_cols=122 Identities=13% Similarity=0.151 Sum_probs=99.9
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
.+...|+.++.+-+.++.+.|.-|||.+.....-..|..+|...|+++-.|...-. +.=..+|++ . +..-.+-++|
T Consensus 406 ~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa~--A-G~~GaVTIAT 481 (925)
T PRK12903 406 GTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIAK--A-GQKGAITIAT 481 (925)
T ss_pred EcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHHh--C-CCCCeEEEec
Confidence 35678999999999999999999999999999999999999999999999988643 223345542 2 3344557789
Q ss_pred CccccccCcccCC--------EEEEeCCCCCcchHHHHHHhhhccCCCCcEEEE
Q 000994 1132 RAGGLGINLTAAD--------TVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSW 1177 (1196)
Q Consensus 1132 rAGGlGINLTaAd--------tVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVY 1177 (1196)
..+|-|-++.-.. +||..+..=|--+|.|..||++|-|..-....|
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 9999998866444 999999999999999999999999987655443
No 133
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.67 E-value=6.7e-05 Score=84.20 Aligned_cols=76 Identities=25% Similarity=0.295 Sum_probs=60.9
Q ss_pred HHHHHHccCCCceEEEEecCccccccCcccC----C---EE-EEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1113 DMVRDFQHRSDIFVFLLSTRAGGLGINLTAA----D---TV-IFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1113 ~~V~dFq~~~di~VfLLSTrAGGlGINLTaA----d---tV-IfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
...+.|++ ++..|.++| +|||.||.|+|- | +| |.++++|+.....|-.||+||-||..+..+.-|++.-.
T Consensus 52 ~e~~~F~~-g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMD-GEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhC-CCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 45679987 577888888 999999999963 2 34 78999999999999999999999998755445555556
Q ss_pred HHHHHh
Q 000994 1185 IFSMIG 1190 (1196)
Q Consensus 1185 IEErIl 1190 (1196)
.|.|..
T Consensus 130 gE~Rfa 135 (278)
T PF13871_consen 130 GERRFA 135 (278)
T ss_pred HHHHHH
Confidence 677654
No 134
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.67 E-value=0.00025 Score=93.12 Aligned_cols=143 Identities=21% Similarity=0.186 Sum_probs=91.6
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccC
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNIN 532 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~ 532 (1196)
.+.+|++-|-.|.|||++++-+...+.+.... ..+++|+= .-|-.|-.++|..+.......+ .......+...+.
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~-~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~ 347 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKN-PKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLE 347 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCC-CeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHh
Confidence 34579999999999999998777777665332 34555555 5567789999999875544433 1122222222221
Q ss_pred cccccccCCCceEEEEehhhHHhcHhh----hhccCccEEEECCCccccCcccHHHHHHHh-ccccceEEeecCCCCCCh
Q 000994 533 PKRLYRRDAGFHILITSYQLLVADEKY----FRRVKWQYMVLDEAQAIKSSNSIRWKTLLS-FNCRNRLLLTGTPIQNNM 607 (1196)
Q Consensus 533 ~~~~~~~~~~~~VvItSYe~l~~d~~~----l~~~~w~~VIlDEAH~iKn~~S~~~kal~~-l~~~~RllLTGTPiqN~l 607 (1196)
. ..-.|+|||-+.+...... ....+.-+||+||||+--. ....+.+.. ++.-.-++.||||+...-
T Consensus 348 ~-------~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~--G~~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 348 D-------GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY--GELAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred c-------CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc--cHHHHHHHHHhccceEEEeeCCcccccc
Confidence 1 1335999999988665422 2345677899999998532 233333333 455667899999997554
Q ss_pred HH
Q 000994 608 AE 609 (1196)
Q Consensus 608 ~E 609 (1196)
..
T Consensus 419 ~~ 420 (962)
T COG0610 419 KD 420 (962)
T ss_pred cc
Confidence 43
No 135
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.63 E-value=0.0026 Score=77.82 Aligned_cols=243 Identities=15% Similarity=0.243 Sum_probs=129.0
Q ss_pred CCchhhccCcHHHHHHHHHHHHhhhc------CCCeEEEeCCCCChHHH--HHHHHHHHHHhcccCCcEEEEeCCccHHH
Q 000994 429 TPELFKGSLKEYQLKGLQWLVNCYEQ------GLNGILADEMGLGKTIQ--AMAFLAHLAEEKNIWGPFLVVAPASVLNN 500 (1196)
Q Consensus 429 ~P~~l~~~LrpyQl~gl~wL~~~~~~------~~ggILADeMGLGKTlq--aIall~~l~~~~~~~gp~LIV~P~sll~n 500 (1196)
.|..-.+.|-.-|+++|.|.....+. .-|-+|.|--|.||-.+ .|-|=.||... .+...+-+..-+-..
T Consensus 257 lP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR---KrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 257 LPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR---KRALWFSVSSDLKFD 333 (1300)
T ss_pred cccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc---ceeEEEEeccccccc
Confidence 44433568889999999988765542 22458999999998544 44444555432 234444455555555
Q ss_pred HHHHHHHhC-CCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh--------hhhc-cCc-----
Q 000994 501 WADEISRFC-PDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK--------YFRR-VKW----- 565 (1196)
Q Consensus 501 W~~Ei~k~~-p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~--------~l~~-~~w----- 565 (1196)
-.+.+.... +.+.|..+.. -... .+..+ .+...+-.|+++||..+..... .|.+ +.|
T Consensus 334 AERDL~DigA~~I~V~alnK--~KYa----kIss~--en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~f 405 (1300)
T KOG1513|consen 334 AERDLRDIGATGIAVHALNK--FKYA----KISSK--ENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDF 405 (1300)
T ss_pred hhhchhhcCCCCccceehhh--cccc----ccccc--ccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcc
Confidence 555565543 3333322211 0000 00000 0111233599999999866421 1221 234
Q ss_pred -cEEEECCCccccC-------cccHHHHHHHhc----cccceEEeecCCCCCChHHHHHHHHhhCCCCCCCH---HHHHH
Q 000994 566 -QYMVLDEAQAIKS-------SNSIRWKTLLSF----NCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSH---EQFNE 630 (1196)
Q Consensus 566 -~~VIlDEAH~iKn-------~~S~~~kal~~l----~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~---~~F~~ 630 (1196)
.+||+||+|..|| ..+++.++++.+ .-.+.+-.|+|--. |=-+|.-...-++++.. .+|.+
T Consensus 406 eGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGegtaf~eF~e 481 (1300)
T KOG1513|consen 406 EGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEGTAFPEFEE 481 (1300)
T ss_pred ceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCCCcCccHHH
Confidence 4799999999999 456677777665 33445556776432 11222223333444332 23333
Q ss_pred HHhhhcccccccCCCcchHHHHHHHHHHHHHHHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHHH
Q 000994 631 WFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAI 697 (1196)
Q Consensus 631 ~f~~~ie~~a~~~~~~~~~ql~rL~~ILkpfmLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l 697 (1196)
+.. .+++.... .-.+-..-|-|+...+-|-- ....-...+-.++|++.=+..|+.-
T Consensus 482 Fi~-AvEkRGvG-----AMEIVAMDMK~rGmYiARQL-----SFkgVsFrieEv~ls~eF~k~Yn~a 537 (1300)
T KOG1513|consen 482 FIH-AVEKRGVG-----AMEIVAMDMKLRGMYIARQL-----SFKGVSFRIEEVPLSKEFRKVYNRA 537 (1300)
T ss_pred HHH-HHHhcCCc-----eeeeeehhhhhhhhhhhhhc-----cccCceEEEEecccCHHHHHHHHHH
Confidence 222 23322111 11122345556666665521 2224445666789999999999764
No 136
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.0003 Score=80.47 Aligned_cols=121 Identities=20% Similarity=0.291 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcccc
Q 000994 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1196)
Q Consensus 1057 KL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGl 1136 (1196)
|+..|..+..+ -...+||+.-.+-++.|.+.|..++++..-+.|.+...+|..++..|.. +..+| |++|.-.+-
T Consensus 252 k~~~l~dl~~~----~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~-gssrv-lIttdl~ar 325 (397)
T KOG0327|consen 252 KLDTLCDLYRR----VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS-GSSRV-LITTDLLAR 325 (397)
T ss_pred cccHHHHHHHh----hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc-CCceE-Eeecccccc
Confidence 88888777772 3478999999999999999999999999999999999999999999987 55666 677889999
Q ss_pred ccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcH
Q 000994 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFI 1185 (1196)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTI 1185 (1196)
||+++..+-||.||.+=|+.....++||++|+|-+- .+..+++..++
T Consensus 326 gidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~d~ 372 (397)
T KOG0327|consen 326 GIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEEDV 372 (397)
T ss_pred ccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHhhH
Confidence 999999999999999999999999999999999653 33456666543
No 137
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.49 E-value=0.00058 Score=78.17 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=50.4
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc---CCcEEEEeCCcc-HHHHHHHHHH
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI---WGPFLVVAPASV-LNNWADEISR 507 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~---~gp~LIV~P~sl-l~nW~~Ei~k 507 (1196)
..+|.|++-++-+...+..+..+|+-..+|+|||+..+..+......... ..+++++++... +.+=..++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999999987666433322221 126677776433 3343444544
No 138
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.49 E-value=0.00058 Score=78.17 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=50.4
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc---CCcEEEEeCCcc-HHHHHHHHHH
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI---WGPFLVVAPASV-LNNWADEISR 507 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~---~gp~LIV~P~sl-l~nW~~Ei~k 507 (1196)
..+|.|++-++-+...+..+..+|+-..+|+|||+..+..+......... ..+++++++... +.+=..++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999999987666433322221 126677776433 3343444544
No 139
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.47 E-value=0.00097 Score=72.63 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=45.9
Q ss_pred cCcHHHHHHHHHHHHhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHH-----hcccCCcEEEEeCCcc-HHHHHHHHHH
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLN-GILADEMGLGKTIQAMAFLAHLAE-----EKNIWGPFLVVAPASV-LNNWADEISR 507 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~g-gILADeMGLGKTlqaIall~~l~~-----~~~~~gp~LIV~P~sl-l~nW~~Ei~k 507 (1196)
+|-+.|.+++..++ ...+ .++.-.+|.|||-+..+++..+.. .....+++||++|... +.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~----~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSAL----SSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHC----TSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH----cCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47789999997665 3334 788889999999888888877732 2344579999999654 6676666666
No 140
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.45 E-value=0.079 Score=67.10 Aligned_cols=162 Identities=20% Similarity=0.299 Sum_probs=105.3
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHH-Hh-CCCC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEIS-RF-CPDL 512 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~-k~-~p~l 512 (1196)
..-.+|.+-+ .....+...++...+-.|||..+--++....+.... +-++-|+| ++++.|=..++. +| ++.+
T Consensus 511 ~Pd~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~-~VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 511 CPDEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDS-DVVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred CCcHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhhcCC-CEEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 3445777644 455577888888899999999988888777766554 78899999 566777666654 55 3332
Q ss_pred c-cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh---hhc--cCccEEEECCCccccCc-ccHHHH
Q 000994 513 K-TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY---FRR--VKWQYMVLDEAQAIKSS-NSIRWK 585 (1196)
Q Consensus 513 ~-v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~---l~~--~~w~~VIlDEAH~iKn~-~S~~~k 585 (1196)
. .+-.+|+-..-. .+ ....+.|.||-.+.+..---. -+. -+..|||+||+|.|.+. .+..|.
T Consensus 586 ~rg~sl~g~ltqEY----si-------np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~E 654 (1330)
T KOG0949|consen 586 LRGVSLLGDLTQEY----SI-------NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWE 654 (1330)
T ss_pred ccchhhHhhhhHHh----cC-------CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHH
Confidence 2 222334221110 00 123578999998876442110 000 14579999999999885 456677
Q ss_pred HHHhccccceEEeecCCCCCChHHHHHHHH
Q 000994 586 TLLSFNCRNRLLLTGTPIQNNMAELWALLH 615 (1196)
Q Consensus 586 al~~l~~~~RllLTGTPiqN~l~EL~sLL~ 615 (1196)
.+.-+-..--++|++| ++++..++..++
T Consensus 655 qll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 655 QLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred HHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 7777766667899999 466666655554
No 141
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.42 E-value=0.07 Score=68.95 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=97.1
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
+...|..++.+-+.++.+.|.-|||-+.....-.+|...|..+|+++-.|..... +.=.++|++=-. .-.+-++|.
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~AG~---~GaVTIATN 684 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEAGQ---PGTVTIATN 684 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhcCC---CCcEEEecc
Confidence 5578999999999999999999999999999999999999999999988876543 233455555322 234466889
Q ss_pred ccccccCcc--------cCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEE
Q 000994 1133 AGGLGINLT--------AADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1133 AGGlGINLT--------aAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtV 1176 (1196)
.+|-|-++. .-=+||--+..=+..+|.|.-||++|-|..-....
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f 736 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQF 736 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceE
Confidence 999996654 34689999999999999999999999998655444
No 142
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.35 E-value=0.00094 Score=88.71 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhh-CCCeEEEEecchHHHHHHHHHHHhCCC---cEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1057 KLQTLDILLKRLRA-ENHRVLLFAQMTKMLNILEDYMNYRKY---RYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1057 KL~~Ld~LL~~Lk~-~ghKVLIFSQ~t~mlDlLee~L~~rg~---~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
++..+...+..+.. ....||||..-...++.+.+.|...++ .++-|.|+.+.++|..+ |+..+..+ +|+||.
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~v---f~~~~~rk-IVLATN 338 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRV---FQPHSGRR-IVLATN 338 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHH---hCCCCCce-EEEecc
Confidence 44455555555433 356899999999999999999987654 57889999999999887 44433334 588999
Q ss_pred ccccccCcccCCEEEEeCC----CCCc--------------chHHHHHHhhhccCCCCcEEEEEeeeCCcHHH
Q 000994 1133 AGGLGINLTAADTVIFYES----DWNP--------------TLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFS 1187 (1196)
Q Consensus 1133 AGGlGINLTaAdtVIfyDs----dWNP--------------t~d~QAmdRahRiGQtK~VtVYRLIt~gTIEE 1187 (1196)
.+..||++...++||-++. .+|| +.-.|+.|||+|.| +-.+|||+++...+.
T Consensus 339 IAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 339 VAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred HHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 9999999999999998762 2332 34567777777776 788999999876654
No 143
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.0017 Score=83.79 Aligned_cols=147 Identities=15% Similarity=0.185 Sum_probs=93.7
Q ss_pred hhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHHhCCC
Q 000994 433 FKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPD 511 (1196)
Q Consensus 433 l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k~~p~ 511 (1196)
+...|-++|.+++.-+. .+.+.+++..+|.|||+.+--+++...... ..+.-..| +++..|=..+|..-+.+
T Consensus 116 ~~F~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~~---qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRDG---QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHcC---CceEeccchhhhhhhHHHHHHHHhhh
Confidence 56799999999986554 888999999999999999977766554432 34788899 66666766666533322
Q ss_pred C--ccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcH--hhhhccCccEEEECCCccccCccc-HHHHH
Q 000994 512 L--KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE--KYFRRVKWQYMVLDEAQAIKSSNS-IRWKT 586 (1196)
Q Consensus 512 l--~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~--~~l~~~~w~~VIlDEAH~iKn~~S-~~~ka 586 (1196)
. -+-++.|+.. . ..+..+++.|-+.+++-. ..........||+||.|.|....- ..|..
T Consensus 189 v~~~vGL~TGDv~--------------I--N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE 252 (1041)
T COG4581 189 VADMVGLMTGDVS--------------I--NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEE 252 (1041)
T ss_pred hhhhccceeccee--------------e--CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHH
Confidence 2 1122333211 1 133446665558776521 111112456799999999987544 34555
Q ss_pred HHhc-ccc-ceEEeecCC
Q 000994 587 LLSF-NCR-NRLLLTGTP 602 (1196)
Q Consensus 587 l~~l-~~~-~RllLTGTP 602 (1196)
+.-+ ... +-++||||-
T Consensus 253 ~Ii~lP~~v~~v~LSATv 270 (1041)
T COG4581 253 VIILLPDHVRFVFLSATV 270 (1041)
T ss_pred HHHhcCCCCcEEEEeCCC
Confidence 4443 333 678999993
No 144
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0014 Score=82.72 Aligned_cols=125 Identities=24% Similarity=0.392 Sum_probs=91.5
Q ss_pred cCcHHHHHHHHHHHHhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHHHHHHhCC---
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLN-GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISRFCP--- 510 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~g-gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~Ei~k~~p--- 510 (1196)
.++..|.--...++ .|.+ .|+| .+|+|||--.+....+++..+ +..+||+|..+ +.|=.+-|.+|.+
T Consensus 82 ~~ws~QR~WakR~~----rg~SFaiiA-PTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~~e~~~ 153 (1187)
T COG1110 82 RPWSAQRVWAKRLV----RGKSFAIIA-PTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKFAEDAG 153 (1187)
T ss_pred CchHHHHHHHHHHH----cCCceEEEc-CCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 56778876444444 3444 4665 799999988877777776554 57899999665 6788888998873
Q ss_pred --CCccccccCCh--hhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccc
Q 000994 511 --DLKTLPYWGGL--QERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAI 576 (1196)
Q Consensus 511 --~l~v~~y~G~~--~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~i 576 (1196)
...++ ||+.- +++......+ ..++|||+|||-+.+.+....|.+++|++|++|-+..+
T Consensus 154 ~~~~~~~-yh~~l~~~ekee~le~i-------~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 154 SLDVLVV-YHSALPTKEKEEALERI-------ESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred Ccceeee-eccccchHHHHHHHHHH-------hcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 33334 88863 3333222222 23789999999999999999999999999999999976
No 145
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.27 E-value=0.00078 Score=79.94 Aligned_cols=111 Identities=23% Similarity=0.241 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHh--hCCCeEEEEecchHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHHHcc-CCCceEEEEecC
Q 000994 1057 KLQTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNYRKY-RYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLLSTR 1132 (1196)
Q Consensus 1057 KL~~Ld~LL~~Lk--~~ghKVLIFSQ~t~mlDlLee~L~~rg~-~y~rLDGStk~~dR~~~V~dFq~-~~di~VfLLSTr 1132 (1196)
+|.+++.++..+. ..|+=|+-||- +-|--+..-+..+|. +.+.|.||.+++.|......||+ ++++.|++.| .
T Consensus 341 pL~v~~~~~~sl~nlk~GDCvV~FSk--k~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-D 417 (700)
T KOG0953|consen 341 PLVVEETALGSLSNLKPGDCVVAFSK--KDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-D 417 (700)
T ss_pred cceehhhhhhhhccCCCCCeEEEeeh--hhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-c
Confidence 3444444444443 34888888886 333334445555554 59999999999999999999998 5667776655 9
Q ss_pred ccccccCcccCCEEEEeCCC---------CCcchHHHHHHhhhccCCC
Q 000994 1133 AGGLGINLTAADTVIFYESD---------WNPTLDLQAMDRAHRLGQT 1171 (1196)
Q Consensus 1133 AGGlGINLTaAdtVIfyDsd---------WNPt~d~QAmdRahRiGQt 1171 (1196)
|-|.||||. -++||||+.- -.-+...|--|||+|.|-.
T Consensus 418 AIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 418 AIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred ccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 999999995 6899999875 2334567899999999764
No 146
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.27 E-value=0.00099 Score=87.24 Aligned_cols=112 Identities=17% Similarity=0.260 Sum_probs=75.8
Q ss_pred HHHHHHHHH-hhCCCeEEEEecchHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1060 TLDILLKRL-RAENHRVLLFAQMTKMLNILEDYMNY----RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1060 ~Ld~LL~~L-k~~ghKVLIFSQ~t~mlDlLee~L~~----rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
.+...|.++ ...+.++|||+..-++++.+.++|.. .++.. +..... .+|..+++.|.. .+. -+|+.|...
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~-~~~-~iLlgt~sf 735 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNN-GEK-AILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHh-CCC-eEEEEccee
Confidence 444445444 33456999999999999999999875 34443 333222 479999999986 333 346678999
Q ss_pred ccccCcccCC--EEEEeCCCC-Ccc-----------------------------hHHHHHHhhhccCCCCcEEE
Q 000994 1135 GLGINLTAAD--TVIFYESDW-NPT-----------------------------LDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1135 GlGINLTaAd--tVIfyDsdW-NPt-----------------------------~d~QAmdRahRiGQtK~VtV 1176 (1196)
..||++..-+ .||+.-.++ ||. .-.||+||+-|-.+.+-|.+
T Consensus 736 ~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred ecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 9999998755 456654332 221 23589999999888776544
No 147
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=97.27 E-value=0.0028 Score=71.66 Aligned_cols=189 Identities=19% Similarity=0.237 Sum_probs=125.2
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCCCCc
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPDLK 513 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p~l~ 513 (1196)
...||-|+++++..+ .+...+|...+|-||++.-- +-.+.. .|-.|||||. |++..-.-.++....+..
T Consensus 93 ekfrplq~~ain~~m----a~ed~~lil~tgggkslcyq--lpal~a----dg~alvi~plislmedqil~lkqlgi~as 162 (695)
T KOG0353|consen 93 EKFRPLQLAAINATM----AGEDAFLILPTGGGKSLCYQ--LPALCA----DGFALVICPLISLMEDQILQLKQLGIDAS 162 (695)
T ss_pred HhcChhHHHHhhhhh----ccCceEEEEeCCCccchhhh--hhHHhc----CCceEeechhHHHHHHHHHHHHHhCcchh
Confidence 368999999998776 67778999999999986321 111111 2788999995 566655566666655544
Q ss_pred cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh-------hhccCccEEEECCCccccC------cc
Q 000994 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY-------FRRVKWQYMVLDEAQAIKS------SN 580 (1196)
Q Consensus 514 v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~-------l~~~~w~~VIlDEAH~iKn------~~ 580 (1196)
.+-...++.+.+.+...+ .+.+..|..+.+|.+.+.+.... +....|.++-+||+|.... +.
T Consensus 163 ~lnansske~~k~v~~~i-----~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~d 237 (695)
T KOG0353|consen 163 MLNANSSKEEAKRVEAAI-----TNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPD 237 (695)
T ss_pred hccCcccHHHHHHHHHHH-----cCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcc
Confidence 444444444444433333 34557899999999988776544 3345688999999997743 22
Q ss_pred cHHHHHH-HhccccceEEeecCCCCCChHHHHHHHH----------hhCCCCC-------CCHHHHHHHHhhhccc
Q 000994 581 SIRWKTL-LSFNCRNRLLLTGTPIQNNMAELWALLH----------FIMPTLF-------DSHEQFNEWFSKGIES 638 (1196)
Q Consensus 581 S~~~kal-~~l~~~~RllLTGTPiqN~l~EL~sLL~----------FL~P~~f-------~s~~~F~~~f~~~ie~ 638 (1196)
-+..-.| ++|+....+.||+|...|-+.|.-.+|- |-.|.+. ++.++|.+.+.+.|..
T Consensus 238 y~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~ 313 (695)
T KOG0353|consen 238 YKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKG 313 (695)
T ss_pred hHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhcc
Confidence 2222222 4577888899999999998888777664 2244432 4667788877766643
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.19 E-value=0.015 Score=74.87 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=88.5
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhc-cc-------CCcEEEEeC-CccHHHHHHHHHHhCCCCcc--ccccCChh
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEK-NI-------WGPFLVVAP-ASVLNNWADEISRFCPDLKT--LPYWGGLQ 522 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~-~~-------~gp~LIV~P-~sll~nW~~Ei~k~~p~l~v--~~y~G~~~ 522 (1196)
...+-+|+..+|.|||..|+--+..-...+ +. ...+.-|+| ++|+..|...|.++...+.| .-..|...
T Consensus 324 ~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~ 403 (1674)
T KOG0951|consen 324 GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQ 403 (1674)
T ss_pred CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEeccccc
Confidence 344679999999999988765443322221 11 124567888 77888899999998865544 44455322
Q ss_pred hHHHHhhccCcccccccCCCceEEEEehhhH---Hh---cHhhhhccCccEEEECCCccccCc-c----cHHHHHHHhc-
Q 000994 523 ERMVLRKNINPKRLYRRDAGFHILITSYQLL---VA---DEKYFRRVKWQYMVLDEAQAIKSS-N----SIRWKTLLSF- 590 (1196)
Q Consensus 523 ~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l---~~---d~~~l~~~~w~~VIlDEAH~iKn~-~----S~~~kal~~l- 590 (1196)
-.. .+...-.|++||.+.. .+ |..+.+ -+.++|+||.|.+-.. . |...+.....
T Consensus 404 l~~------------~qieeTqVIV~TPEK~DiITRk~gdraY~q--lvrLlIIDEIHLLhDdRGpvLESIVaRt~r~se 469 (1674)
T KOG0951|consen 404 LGK------------EQIEETQVIVTTPEKWDIITRKSGDRAYEQ--LVRLLIIDEIHLLHDDRGPVLESIVARTFRRSE 469 (1674)
T ss_pred chh------------hhhhcceeEEeccchhhhhhcccCchhHHH--HHHHHhhhhhhhcccccchHHHHHHHHHHHHhh
Confidence 110 1123345888887765 11 111211 2467999999999332 2 2223333333
Q ss_pred ---cccceEEeecCCCCCChHHHHHHHHhhCCCCCC
Q 000994 591 ---NCRNRLLLTGTPIQNNMAELWALLHFIMPTLFD 623 (1196)
Q Consensus 591 ---~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~ 623 (1196)
...+-++||||- -|..|.-+.|+.-.+++|.
T Consensus 470 s~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf~ 503 (1674)
T KOG0951|consen 470 STEEGSRLVGLSATL--PNYEDVASFLRVDPEGLFY 503 (1674)
T ss_pred hcccCceeeeecccC--CchhhhHHHhccCcccccc
Confidence 234558899995 3566665544433355553
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.18 E-value=0.0022 Score=82.38 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=55.5
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHH
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISR 507 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k 507 (1196)
.+||.|.+.+.-+......+..+++-..+|+|||+.+|+.........+...+++..+. .+.+.|-.+|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 46999999999999999999999999999999999888766554443332234555555 3458888999887
No 150
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.17 E-value=0.0019 Score=69.99 Aligned_cols=154 Identities=21% Similarity=0.258 Sum_probs=71.4
Q ss_pred CcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCC---Cc
Q 000994 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPD---LK 513 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~---l~ 513 (1196)
+-++|...+..|. ...-.++--..|.|||+.|++....+... +....++|+-|..-. .+++. |.|+ -+
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~---~~~lG-flpG~~~eK 75 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEA---GEDLG-FLPGDLEEK 75 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--T---T-----SS-------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCC---ccccc-cCCCCHHHH
Confidence 4568999988877 34466888889999999999998887766 334677777776533 22221 2222 12
Q ss_pred cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhcccc
Q 000994 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCR 593 (1196)
Q Consensus 514 v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~ 593 (1196)
.-+|... -...+........+........|-+.+...++.. .+...+||+||||++.. ...-..+.++...
T Consensus 76 ~~p~~~p--~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGr-----t~~~~~iIvDEaQN~t~--~~~k~ilTR~g~~ 146 (205)
T PF02562_consen 76 MEPYLRP--IYDALEELFGKEKLEELIQNGKIEIEPLAFIRGR-----TFDNAFIIVDEAQNLTP--EELKMILTRIGEG 146 (205)
T ss_dssp --TTTHH--HHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG--H--HHHHHHHTTB-TT
T ss_pred HHHHHHH--HHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCc-----cccceEEEEecccCCCH--HHHHHHHcccCCC
Confidence 2222111 1111111111111100011223555555444332 24568999999998732 3344445667788
Q ss_pred ceEEeecCCCCCChH
Q 000994 594 NRLLLTGTPIQNNMA 608 (1196)
Q Consensus 594 ~RllLTGTPiqN~l~ 608 (1196)
.+++++|-|.|.+..
T Consensus 147 skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 147 SKIIITGDPSQIDLP 161 (205)
T ss_dssp -EEEEEE--------
T ss_pred cEEEEecCceeecCC
Confidence 999999999887654
No 151
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.13 E-value=0.0024 Score=79.83 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhC
Q 000994 441 QLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFC 509 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~ 509 (1196)
|.+.+.++...+.++...++-..+|.|||+..+.-+........ .+++||++|. .+..|+.+++..+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~-~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERP-DQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhcc-CceEEEECCcHHHHHHHHHHHHHHH
Confidence 78888899988888877788889999999876654433322211 2689999995 45667888876554
No 152
>PRK10536 hypothetical protein; Provisional
Probab=97.05 E-value=0.0027 Score=70.67 Aligned_cols=154 Identities=21% Similarity=0.177 Sum_probs=87.6
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCC---
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDL--- 512 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l--- 512 (1196)
.+-..|...+.||.+ +...++--+.|+|||..++++......... ...++|+=|.-.. .|.-.|.|+-
T Consensus 59 p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~----ge~LGfLPG~~~e 129 (262)
T PRK10536 59 ARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQA----DEDLGFLPGDIAE 129 (262)
T ss_pred CCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCc----hhhhCcCCCCHHH
Confidence 456688888887763 447788899999999999999886443322 2444544444322 3444555541
Q ss_pred ccccccCChhhHHHHhhccCcccccc--cCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhc
Q 000994 513 KTLPYWGGLQERMVLRKNINPKRLYR--RDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF 590 (1196)
Q Consensus 513 ~v~~y~G~~~~r~~l~~~~~~~~~~~--~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l 590 (1196)
++.+|... -...+........+.. ....-.|.+.+...++.. .+.-++|||||||++.- ......+.++
T Consensus 130 K~~p~~~p--i~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~~--~~~k~~ltR~ 200 (262)
T PRK10536 130 KFAPYFRP--VYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGR-----TFENAVVILDEAQNVTA--AQMKMFLTRL 200 (262)
T ss_pred HHHHHHHH--HHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCC-----cccCCEEEEechhcCCH--HHHHHHHhhc
Confidence 22222110 0001111111000000 001123556555544432 13458999999999844 4555566778
Q ss_pred cccceEEeecCCCCCCh
Q 000994 591 NCRNRLLLTGTPIQNNM 607 (1196)
Q Consensus 591 ~~~~RllLTGTPiqN~l 607 (1196)
....+++++|-|-|.++
T Consensus 201 g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 201 GENVTVIVNGDITQCDL 217 (262)
T ss_pred CCCCEEEEeCChhhccC
Confidence 88999999999987654
No 153
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=96.96 E-value=0.0033 Score=78.74 Aligned_cols=142 Identities=20% Similarity=0.271 Sum_probs=93.4
Q ss_pred hccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHH-HHHHHHHHhCCCC
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN-NWADEISRFCPDL 512 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~-nW~~Ei~k~~p~l 512 (1196)
...|-.+|.+++-.|. .|-+.++|.-+-.|||+.|=..++.. ..+. ..++...|--.|. |=-++|+.-+.+.
T Consensus 295 pFelD~FQk~Ai~~le----rg~SVFVAAHTSAGKTvVAEYAiala-q~h~--TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLE----RGDSVFVAAHTSAGKTVVAEYAIALA-QKHM--TRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCCccHHHHHHHHHHH----cCCeEEEEecCCCCcchHHHHHHHHH-Hhhc--cceEecchhhhhccchHHHHHHhcccc
Confidence 4588999999986554 78889999999999999974443332 2222 4677788855555 4556676555444
Q ss_pred ccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhc----HhhhhccCccEEEECCCccccCcc-cHHHHHH
Q 000994 513 KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD----EKYFRRVKWQYMVLDEAQAIKSSN-SIRWKTL 587 (1196)
Q Consensus 513 ~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d----~~~l~~~~w~~VIlDEAH~iKn~~-S~~~kal 587 (1196)
. ...|+... + ....++|+|-+++++- ...++. -..||+||+|++.+.. .-.|..+
T Consensus 368 g--LlTGDvqi--------n--------PeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHYiND~eRGvVWEEV 427 (1248)
T KOG0947|consen 368 G--LLTGDVQI--------N--------PEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHYINDVERGVVWEEV 427 (1248)
T ss_pred c--eeecceee--------C--------CCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeeecccccccccceee
Confidence 3 44554221 1 3355899999988763 334444 4569999999997643 3446665
Q ss_pred Hhcccc--ceEEeecCC
Q 000994 588 LSFNCR--NRLLLTGTP 602 (1196)
Q Consensus 588 ~~l~~~--~RllLTGTP 602 (1196)
.-+-.+ +-++||||-
T Consensus 428 iIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 428 IIMLPRHVNFILLSATV 444 (1248)
T ss_pred eeeccccceEEEEeccC
Confidence 544333 448999994
No 154
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=96.64 E-value=0.0061 Score=70.25 Aligned_cols=96 Identities=22% Similarity=0.363 Sum_probs=82.0
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEE
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRK---YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg---~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1196)
-.|.|||+.-..-.|-||.||..+| |.++-|.|.-++.+|+.-++.|.. -++ -||+.|..++-||++|..-.||.
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk-~dv-kflictdvaargldi~g~p~~in 582 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK-FDV-KFLICTDVAARGLDITGLPFMIN 582 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh-cCe-EEEEEehhhhccccccCCceEEE
Confidence 3699999998888999999998874 688899999999999999999975 444 47889999999999999999999
Q ss_pred eCCCCCcchHHHHHHhhh---ccC
Q 000994 1149 YESDWNPTLDLQAMDRAH---RLG 1169 (1196)
Q Consensus 1149 yDsdWNPt~d~QAmdRah---RiG 1169 (1196)
+..+-.-+....+|||++ |+|
T Consensus 583 vtlpd~k~nyvhrigrvgraermg 606 (725)
T KOG0349|consen 583 VTLPDDKTNYVHRIGRVGRAERMG 606 (725)
T ss_pred EecCcccchhhhhhhccchhhhcc
Confidence 988777777777766554 556
No 155
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.47 E-value=0.0086 Score=72.55 Aligned_cols=74 Identities=27% Similarity=0.483 Sum_probs=61.2
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHHHHHHhCCCCcc
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISRFCPDLKT 514 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~Ei~k~~p~l~v 514 (1196)
+|-.-|..+|...+ ++.-.||--.+|+|||+++-+.+.++.+.+. +|+||++|..+ +.|-..-|.+- +++|
T Consensus 410 kLN~SQ~~AV~~VL----~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~--~~VLvcApSNiAVDqLaeKIh~t--gLKV 481 (935)
T KOG1802|consen 410 KLNASQSNAVKHVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQHA--GPVLVCAPSNIAVDQLAEKIHKT--GLKV 481 (935)
T ss_pred hhchHHHHHHHHHH----cCCceeeecCCCCCceehhHHHHHHHHHhcC--CceEEEcccchhHHHHHHHHHhc--CceE
Confidence 68889999998888 5556788889999999999999999988754 89999999887 78888888875 3666
Q ss_pred ccc
Q 000994 515 LPY 517 (1196)
Q Consensus 515 ~~y 517 (1196)
+..
T Consensus 482 vRl 484 (935)
T KOG1802|consen 482 VRL 484 (935)
T ss_pred eee
Confidence 544
No 156
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.40 E-value=0.76 Score=59.20 Aligned_cols=84 Identities=10% Similarity=0.136 Sum_probs=66.9
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCC-HHHHHHHHHHHccCCCceEEEEec
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSST-IMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk-~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
+...|..++.+-+.+..+.|.-|||-+.....-+.|..+|..+|+++-.|..... .++=.++|++= +..--+-++|
T Consensus 405 t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A---G~~G~VTIAT 481 (870)
T CHL00122 405 DELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA---GRKGSITIAT 481 (870)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc---CCCCcEEEec
Confidence 4567999998888889999999999999999999999999999999999998742 24445666663 2333456788
Q ss_pred CccccccC
Q 000994 1132 RAGGLGIN 1139 (1196)
Q Consensus 1132 rAGGlGIN 1139 (1196)
..+|-|-+
T Consensus 482 NMAGRGTD 489 (870)
T CHL00122 482 NMAGRGTD 489 (870)
T ss_pred cccCCCcC
Confidence 88888744
No 157
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.24 E-value=0.019 Score=69.62 Aligned_cols=160 Identities=22% Similarity=0.354 Sum_probs=97.8
Q ss_pred hhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHHHHH----
Q 000994 432 LFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEIS---- 506 (1196)
Q Consensus 432 ~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~Ei~---- 506 (1196)
.++..|-+-|..++.+..+. + .--|+--.+|+|||.+...+|..+...+ ..+||.+|..+ +.|-.+.+.
T Consensus 181 ~~~~~ln~SQk~Av~~~~~~--k-~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl~~~~~ 254 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAINN--K-DLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERLTHLKL 254 (649)
T ss_pred cCCccccHHHHHHHHHHhcc--C-CceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHhccccc
Confidence 45668889999999988752 2 3346666899999999999888877654 58899999876 777777433
Q ss_pred ---------HhCCC-----CccccccCC---------h---------------hhHHH-------HhhccC---cccccc
Q 000994 507 ---------RFCPD-----LKTLPYWGG---------L---------------QERMV-------LRKNIN---PKRLYR 538 (1196)
Q Consensus 507 ---------k~~p~-----l~v~~y~G~---------~---------------~~r~~-------l~~~~~---~~~~~~ 538 (1196)
+..+. +..+.-.++ + ..+.. +++.+. .+....
T Consensus 255 ~l~R~g~paRl~~~~~~~sld~~~~t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~e 334 (649)
T KOG1803|consen 255 NLVRVGHPARLLESVADHSLDLLSNTKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKE 334 (649)
T ss_pred chhhcCchhhhhhhhhhhHHHHHHhcCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111111111 0 00000 111110 000112
Q ss_pred cCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCC
Q 000994 539 RDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQ 604 (1196)
Q Consensus 539 ~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiq 604 (1196)
...+..||++|-..-.. ..+.+..|++||+|||-.. ..+..|-.+..-+ +++|.|-|.|
T Consensus 335 ii~n~~VVfaTl~ga~~--~~~~~~~fD~vIIDEaaQa--mE~~cWipvlk~k---k~ILaGDp~Q 393 (649)
T KOG1803|consen 335 IISNSRVVFATLGGALD--RLLRKRTFDLVIIDEAAQA--MEPQCWIPVLKGK---KFILAGDPKQ 393 (649)
T ss_pred hhcccceEEEeccchhh--hhhcccCCCEEEEehhhhh--ccchhhhHHhcCC---ceEEeCCccc
Confidence 23456678777665444 5566778999999998654 2345566665544 9999999987
No 158
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.17 E-value=0.0079 Score=59.72 Aligned_cols=115 Identities=24% Similarity=0.213 Sum_probs=64.6
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcc---cCCcEEEEeCCcc-HHHHHHHHHHhCC-CCccccccCChhhHHHHhh
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKN---IWGPFLVVAPASV-LNNWADEISRFCP-DLKTLPYWGGLQERMVLRK 529 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~---~~gp~LIV~P~sl-l~nW~~Ei~k~~p-~l~v~~y~G~~~~r~~l~~ 529 (1196)
+..+++.-+.|.|||..+-.++..+..... ...-+.|-+|... ...+..++..... .... ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~---------- 70 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQ---------- 70 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS----------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cC----------
Confidence 345688889999999999888877654211 1123455566554 5566666654321 0000 00
Q ss_pred ccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhc--cccceEEeecCC
Q 000994 530 NINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF--NCRNRLLLTGTP 602 (1196)
Q Consensus 530 ~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l--~~~~RllLTGTP 602 (1196)
+..+.+..-...+....-.+|||||+|++. +......+..+ ...-.++|.|||
T Consensus 71 ------------------~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 71 ------------------TSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp -------------------HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ------------------CHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 011111112233444444789999999984 24455555555 667789999999
No 159
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=96.15 E-value=0.0065 Score=72.30 Aligned_cols=100 Identities=20% Similarity=0.293 Sum_probs=86.9
Q ss_pred eEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCCCC
Q 000994 1074 RVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDW 1153 (1196)
Q Consensus 1074 KVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdW 1153 (1196)
|.|||+.....+.-|.-+|...++.-+-|..++.+.+|-.-++.|...++ .+|+.|..++-||++...+|||+|.-+-
T Consensus 465 rTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~--~VLiaTDVAARGLDIp~V~HVIHYqVPr 542 (731)
T KOG0347|consen 465 RTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPS--GVLIATDVAARGLDIPGVQHVIHYQVPR 542 (731)
T ss_pred ceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCC--eEEEeehhhhccCCCCCcceEEEeecCC
Confidence 89999999999999999999999999999999999999999999987554 5577889999999999999999999988
Q ss_pred CcchHHHHHHhhhccCCCCcEEE
Q 000994 1154 NPTLDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1154 NPt~d~QAmdRahRiGQtK~VtV 1176 (1196)
.-.+...+-||.-|-+- .-|+|
T Consensus 543 tseiYVHRSGRTARA~~-~Gvsv 564 (731)
T KOG0347|consen 543 TSEIYVHRSGRTARANS-EGVSV 564 (731)
T ss_pred ccceeEecccccccccC-CCeEE
Confidence 87777776666666543 33444
No 160
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.052 Score=64.94 Aligned_cols=115 Identities=23% Similarity=0.300 Sum_probs=96.2
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
|-+.-|..-+..-.+.|.||||-+=-.+|..-|-+||...|++...|....+.-+|..++.+... +.|-.|+...-.-
T Consensus 430 ~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~--G~~DvLVGINLLR 507 (663)
T COG0556 430 GQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGINLLR 507 (663)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc--CCccEEEeehhhh
Confidence 44444444444445679999999999999999999999999999999999999999999999965 4455577778889
Q ss_pred cccCcccCCEEEEeCCCC-----CcchHHHHHHhhhccCCCC
Q 000994 1136 LGINLTAADTVIFYESDW-----NPTLDLQAMDRAHRLGQTK 1172 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdW-----NPt~d~QAmdRahRiGQtK 1172 (1196)
.||+|....-|-++|-|- +-+...|-||||-|--.-|
T Consensus 508 EGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~Gk 549 (663)
T COG0556 508 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 (663)
T ss_pred ccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCe
Confidence 999999999999999985 7788999999999964433
No 161
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.01 E-value=0.027 Score=70.54 Aligned_cols=135 Identities=15% Similarity=0.198 Sum_probs=87.3
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHH--------HHHHH-HHhCC--CCccccccCChh
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNN--------WADEI-SRFCP--DLKTLPYWGGLQ 522 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~n--------W~~Ei-~k~~p--~l~v~~y~G~~~ 522 (1196)
...++=+-.|+|+|||.+-+-+|..|...++. -.|+||||...+.. -.++| ..++. .+..++|..+.
T Consensus 73 ~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~-~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~- 150 (985)
T COG3587 73 DKLNIDILMETGTGKTYTYLRTMFELHKKYGL-FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDI- 150 (985)
T ss_pred CcceeeEEEecCCCceeeHHHHHHHHHHHhCc-eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHH-
Confidence 44466677899999999999999888877765 68999999643321 12223 33332 24444443111
Q ss_pred hHHHHhhccCcccccccCCCceEEEEehhhHHhc---Hhh---------------------hhccCccEEEECCCccccC
Q 000994 523 ERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD---EKY---------------------FRRVKWQYMVLDEAQAIKS 578 (1196)
Q Consensus 523 ~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d---~~~---------------------l~~~~w~~VIlDEAH~iKn 578 (1196)
.+ .. ........|++.+.+.+.++ ... +... --.||+||-|++..
T Consensus 151 ~~----~~------~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~-rPIvIvDEPh~f~~ 219 (985)
T COG3587 151 EK----FK------FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASM-RPIVIVDEPHRFLG 219 (985)
T ss_pred HH----Hh------hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhc-CCEEEecChhhccc
Confidence 11 01 12235567888888887665 111 1111 23799999999977
Q ss_pred cccHHHHHHHhccccceEEeecCC
Q 000994 579 SNSIRWKTLLSFNCRNRLLLTGTP 602 (1196)
Q Consensus 579 ~~S~~~kal~~l~~~~RllLTGTP 602 (1196)
. .+.+.++..++.-..+=..||-
T Consensus 220 ~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 220 D-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred c-hHHHHHHHhhCceEEEEecccc
Confidence 6 7899999999888777777774
No 162
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.00 E-value=0.011 Score=68.64 Aligned_cols=124 Identities=17% Similarity=0.167 Sum_probs=107.1
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
..|..+|..+|..... ..+.+||.--......+.+.|...|+...-+.|++....|..-+.+|.. .-+-+|++|+.|
T Consensus 245 a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~--~k~~~lvvTdva 321 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRG--RKTSILVVTDVA 321 (529)
T ss_pred HHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccC--CccceEEEehhh
Confidence 5688888888877654 5689999998899999999999999999999999999999999999976 334568889999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
.-|++..--|+||.||-+-.|.+-..+.||+.|-|.| -+-|-||+..
T Consensus 322 aRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~ 368 (529)
T KOG0337|consen 322 ARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVAST 368 (529)
T ss_pred hccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEecc
Confidence 9999999999999999999999999999988888865 3567777654
No 163
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.96 E-value=0.037 Score=73.31 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=78.0
Q ss_pred HHHHHHHHHHh-hCCCeEEEEecchHHHHHHHHHHHhCCC--cEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1059 QTLDILLKRLR-AENHRVLLFAQMTKMLNILEDYMNYRKY--RYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1059 ~~Ld~LL~~Lk-~~ghKVLIFSQ~t~mlDlLee~L~~rg~--~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
..+.+.|.++. ..+.++||++..-++|..+.++|..... .+..+.-..+...|..+++.|+..++ -+|+.|.+-.
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~--~iLlG~~sFw 815 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK--AILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC--eEEEecCccc
Confidence 45555555554 3566999999999999988888864322 23333322222358999999986332 3466778888
Q ss_pred cccCcccC--CEEEEeCCCC-Ccch-----------------------------HHHHHHhhhccCCCCcEEE
Q 000994 1136 LGINLTAA--DTVIFYESDW-NPTL-----------------------------DLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1136 lGINLTaA--dtVIfyDsdW-NPt~-----------------------------d~QAmdRahRiGQtK~VtV 1176 (1196)
+||++... ..||+.=.++ +|.. -.||+||.-|-.+-+-|.|
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ 888 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVF 888 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEE
Confidence 99999864 7788876555 4431 1488899999888776544
No 164
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.95 E-value=0.029 Score=73.08 Aligned_cols=87 Identities=11% Similarity=0.153 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcccccc
Q 000994 1059 QTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGI 1138 (1196)
Q Consensus 1059 ~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGI 1138 (1196)
..+.+.+..+...+.++||++..-++|..+.+.|....+.. ..-|... .|..++++|+.. +- -+|+.|.+-.+||
T Consensus 634 ~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~-~~-~vLlG~~sFwEGV 708 (820)
T PRK07246 634 EEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRG-EQ-QILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcC-CC-eEEEecchhhCCC
Confidence 34555555555667899999999999999999987665443 4445432 367799999863 22 3567778899999
Q ss_pred Ccc--cCCEEEEeC
Q 000994 1139 NLT--AADTVIFYE 1150 (1196)
Q Consensus 1139 NLT--aAdtVIfyD 1150 (1196)
++. .+..||+.=
T Consensus 709 D~p~~~~~~viI~k 722 (820)
T PRK07246 709 DFVQADRMIEVITR 722 (820)
T ss_pred CCCCCCeEEEEEec
Confidence 996 456666655
No 165
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.94 E-value=0.021 Score=72.36 Aligned_cols=126 Identities=10% Similarity=0.003 Sum_probs=85.6
Q ss_pred CCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcccccccCCCc
Q 000994 465 GLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGF 543 (1196)
Q Consensus 465 GLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~ 543 (1196)
|.|||-.-+.++......+ +.+||++| -++..|+...|...+++..+.+||+............. . ..+..
T Consensus 170 GSGKTevyl~~i~~~l~~G---k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~-~----~~G~~ 241 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAG---RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLA-V----LRGQA 241 (665)
T ss_pred CCcHHHHHHHHHHHHHHcC---CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHH-H----hCCCC
Confidence 8999999999998877653 47899999 56788999999999986788889986554433322211 1 13567
Q ss_pred eEEEEehhhHHhcHhhhhccCccEEEECCCcc--ccCcccHHH--HHH---Hh-ccccceEEeecCCC
Q 000994 544 HILITSYQLLVADEKYFRRVKWQYMVLDEAQA--IKSSNSIRW--KTL---LS-FNCRNRLLLTGTPI 603 (1196)
Q Consensus 544 ~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~--iKn~~S~~~--kal---~~-l~~~~RllLTGTPi 603 (1196)
.|||-|...+..-.. +..+|||||=|. .|...+.++ +-+ +. ...-..++-|+||-
T Consensus 242 ~IViGtRSAvFaP~~-----~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 242 RVVVGTRSAVFAPVE-----DLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred cEEEEcceeEEeccC-----CCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 899999988754332 458999999884 455443331 111 11 23334567799993
No 166
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=95.89 E-value=0.036 Score=68.25 Aligned_cols=144 Identities=19% Similarity=0.344 Sum_probs=89.4
Q ss_pred chhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHH-HHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHHh
Q 000994 431 ELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAM-AFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRF 508 (1196)
Q Consensus 431 ~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaI-all~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k~ 508 (1196)
+....+|-|+|..++. +.+.+.+.++..-+..|||+.|= |.+..+.+. ..++...| +++-.|=.+|+..=
T Consensus 124 k~YPF~LDpFQ~~aI~----Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k----QRVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 124 KTYPFTLDPFQSTAIK----CIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK----QRVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred cCCCcccCchHhhhhh----hhcCCceEEEEeecCCCcchHHHHHHHHHHHhc----CeEEeeChhhhhcchhHHHHHHH
Confidence 3455689999999984 55678888998889999999974 344445443 46788888 45555666676543
Q ss_pred CCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHh----cHhhhhccCccEEEECCCccccCcccH-H
Q 000994 509 CPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVA----DEKYFRRVKWQYMVLDEAQAIKSSNSI-R 583 (1196)
Q Consensus 509 ~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~----d~~~l~~~~w~~VIlDEAH~iKn~~S~-~ 583 (1196)
+.+ |-.-.|+. +++ .....+|+|-+.+++ ....++.+.| ||+||.|+++...-. .
T Consensus 196 F~D--VGLMTGDV--------TIn--------P~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVV 255 (1041)
T KOG0948|consen 196 FKD--VGLMTGDV--------TIN--------PDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVV 255 (1041)
T ss_pred hcc--cceeecce--------eeC--------CCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhcccccccee
Confidence 322 22223321 111 234478888887765 3445555544 999999999875432 2
Q ss_pred HHHHHh-c-cccceEEeecCC
Q 000994 584 WKTLLS-F-NCRNRLLLTGTP 602 (1196)
Q Consensus 584 ~kal~~-l-~~~~RllLTGTP 602 (1196)
|..-.- + ..-+-+.||||-
T Consensus 256 WEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 256 WEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred eeeeEEeccccceEEEEeccC
Confidence 332222 2 233447899993
No 167
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.74 E-value=0.068 Score=67.81 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=52.9
Q ss_pred hccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHHHHHH
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISR 507 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~Ei~k 507 (1196)
...|-+.|..+|.+.+. .....++--.+|+|||.++++++..+...+ .++||++|... +.+....+..
T Consensus 155 ~~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 155 DPNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHh
Confidence 45789999999988653 334567888899999999999888876543 38999999776 6677777765
No 168
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.026 Score=62.42 Aligned_cols=165 Identities=18% Similarity=0.198 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhhhcCCCeEEEeCCCCChHHH-HHHHHHHHHHhcccCCcEEEEeCCccHH-HHHHHHHHhCCC--Cccc
Q 000994 440 YQLKGLQWLVNCYEQGLNGILADEMGLGKTIQ-AMAFLAHLAEEKNIWGPFLVVAPASVLN-NWADEISRFCPD--LKTL 515 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~~~ggILADeMGLGKTlq-aIall~~l~~~~~~~gp~LIV~P~sll~-nW~~Ei~k~~p~--l~v~ 515 (1196)
-|..++--++ +|...|.-...|.|||.+ +|+++..+.-... .--.||+.|.--|. |-.+-+.-.... .+++
T Consensus 53 IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~~~r-~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 53 IQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDISVR-ETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeecccccc-eeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 3555655555 788889999999999986 5666655532211 13679999976554 444445544433 4445
Q ss_pred cccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcH--hhhhccCccEEEECCCccccCc--ccHHHHHHHhcc
Q 000994 516 PYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE--KYFRRVKWQYMVLDEAQAIKSS--NSIRWKTLLSFN 591 (1196)
Q Consensus 516 ~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~--~~l~~~~w~~VIlDEAH~iKn~--~S~~~kal~~l~ 591 (1196)
...|++.-...+++. +-+.+||.-|...+..-. ..|+.....++|||||..+-|. ..+.+...+.++
T Consensus 128 acigg~n~gedikkl---------d~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp 198 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKL---------DYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP 198 (400)
T ss_pred EEecCCccchhhhhh---------cccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC
Confidence 555654433322221 246689999988876543 3455567789999999988664 455667777775
Q ss_pred -ccceEEeecCCCCCChHHHHHHHHhhCCCCC
Q 000994 592 -CRNRLLLTGTPIQNNMAELWALLHFIMPTLF 622 (1196)
Q Consensus 592 -~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f 622 (1196)
....+++|||- ..|+..+.++.++++.
T Consensus 199 ~~~Qvv~~SATl----p~eilemt~kfmtdpv 226 (400)
T KOG0328|consen 199 PGAQVVLVSATL----PHEILEMTEKFMTDPV 226 (400)
T ss_pred CCceEEEEeccC----cHHHHHHHHHhcCCce
Confidence 66778999996 4677777888777754
No 169
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.34 E-value=0.22 Score=53.77 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=38.7
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccH
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL 498 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll 498 (1196)
+|-+-|.+++..++.. ...-.+|.-..|.|||...-.+...+... + ..+++++|....
T Consensus 1 ~L~~~Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g--~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAEALEAA-G--KRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHHHHHHT-T----EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHHHHHhC-C--CeEEEECCcHHH
Confidence 4778999999988741 22235777889999998766655555443 2 588999997653
No 170
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=95.30 E-value=0.067 Score=62.57 Aligned_cols=118 Identities=17% Similarity=0.220 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC---
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR--- 1132 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr--- 1132 (1196)
-|+..|-.||+- +----|.|||-.-..+---|.=+|..-|++-|.|.|..+...|..+|++||. +.+-+++-|.
T Consensus 253 DKflllyallKL-~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk--G~YdivIAtD~s~ 329 (569)
T KOG0346|consen 253 DKFLLLYALLKL-RLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK--GLYDIVIATDDSA 329 (569)
T ss_pred hhHHHHHHHHHH-HHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC--cceeEEEEccCcc
Confidence 467666666553 2223499999999999888999999999999999999999999999999986 3444444444
Q ss_pred -----------------------cc---------ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEE
Q 000994 1133 -----------------------AG---------GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1133 -----------------------AG---------GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtV 1176 (1196)
++ +-||++...++||.||.+-+++....++||..|-|.+-.+--
T Consensus 330 ~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalS 405 (569)
T KOG0346|consen 330 DGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALS 405 (569)
T ss_pred chhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEE
Confidence 11 359999999999999999999999999999999877654433
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=95.07 E-value=0.19 Score=56.88 Aligned_cols=152 Identities=20% Similarity=0.167 Sum_probs=84.3
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHH----HHHHHHHHhCC
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN----NWADEISRFCP 510 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~----nW~~Ei~k~~p 510 (1196)
-.+++-|+-|+--|. . |-|.=..+|=|||+++. +++++..-.+ .++=||+....|. +|...|-+++
T Consensus 76 ~~p~~vQll~~l~L~----~--G~laEm~TGEGKTli~~-l~a~~~AL~G--~~V~vvT~NdyLA~RD~~~~~~~y~~L- 145 (266)
T PF07517_consen 76 LRPYDVQLLGALALH----K--GRLAEMKTGEGKTLIAA-LPAALNALQG--KGVHVVTSNDYLAKRDAEEMRPFYEFL- 145 (266)
T ss_dssp ----HHHHHHHHHHH----T--TSEEEESTTSHHHHHHH-HHHHHHHTTS--S-EEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred CcccHHHHhhhhhcc----c--ceeEEecCCCCcHHHHH-HHHHHHHHhc--CCcEEEeccHHHhhccHHHHHHHHHHh-
Confidence 356777877774442 2 44888899999999884 4444443333 4677777766654 4888887776
Q ss_pred CCccccccC-Ch-hhHHHHhhccCcccccccCCCceEEEEehhhHHhcH---------hhhhccCccEEEECCCccccC-
Q 000994 511 DLKTLPYWG-GL-QERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE---------KYFRRVKWQYMVLDEAQAIKS- 578 (1196)
Q Consensus 511 ~l~v~~y~G-~~-~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~---------~~l~~~~w~~VIlDEAH~iKn- 578 (1196)
++.+-...+ .. .+|... ...+|+-+|-..+..|. .......++++||||+..+--
T Consensus 146 Glsv~~~~~~~~~~~r~~~-------------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiD 212 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERREA-------------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILID 212 (266)
T ss_dssp T--EEEEETTTEHHHHHHH-------------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTT
T ss_pred hhccccCccccCHHHHHHH-------------HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEe
Confidence 444433322 22 222111 23457777776665541 112235789999999876521
Q ss_pred -----------------------cccHHHHHHHhccccceEEeecCCCCCChHHHH
Q 000994 579 -----------------------SNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELW 611 (1196)
Q Consensus 579 -----------------------~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~ 611 (1196)
..+...+.+... -+...+|||| ....-.|+|
T Consensus 213 ea~~pl~is~~Ke~~~i~~~~~t~a~is~q~~f~~-Y~~l~GmTGT-a~~~~~e~~ 266 (266)
T PF07517_consen 213 EARTPLIISGAKEGLKITPESLTLASISYQNFFRL-YPKLSGMTGT-AKTEAKEFW 266 (266)
T ss_dssp GCCSEEEEEEHHTTS----SEEEEEEEEHHHHHTT-SSEEEEEESS-TGGGHHHHH
T ss_pred cCcccccccccccCCccCCCCeEEEEeehHHHHHh-cchheeeCCC-ChhhHhhcC
Confidence 111222333222 2336789999 777777776
No 172
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.84 E-value=0.062 Score=64.34 Aligned_cols=69 Identities=28% Similarity=0.353 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc-cHHHHHHHHHHhCCCCcc
Q 000994 440 YQLKGLQWLVNCYEQGLN-GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS-VLNNWADEISRFCPDLKT 514 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~~~g-gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s-ll~nW~~Ei~k~~p~l~v 514 (1196)
-|-+++.-|++...+|.. -.|--.+|.|||.++..+|+.+. .|+||++|.- +..|-..||+.|+|+-.|
T Consensus 16 DQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~~------rPtLV~AhNKTLAaQLy~Efk~fFP~NaV 86 (663)
T COG0556 16 DQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKVQ------RPTLVLAHNKTLAAQLYSEFKEFFPENAV 86 (663)
T ss_pred CcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHhC------CCeEEEecchhHHHHHHHHHHHhCcCcce
Confidence 466777788877776654 25555799999999988886653 6999999954 566999999999998444
No 173
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.73 E-value=0.28 Score=58.62 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=44.2
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
..+|-|..-..=+....+.++.|+|-...|+|||+.-++++....-.++..-.-||-|..
T Consensus 16 ~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred ccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 578889877666666777888999999999999999999876655444422233555553
No 174
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=94.67 E-value=0.061 Score=64.39 Aligned_cols=111 Identities=23% Similarity=0.279 Sum_probs=69.8
Q ss_pred eEEEeCCCCChHHH-HHHHHHHHHHh------------cccCCcEEEEeCC-ccHHHHHHHHHHhC--CCCccccccCCh
Q 000994 458 GILADEMGLGKTIQ-AMAFLAHLAEE------------KNIWGPFLVVAPA-SVLNNWADEISRFC--PDLKTLPYWGGL 521 (1196)
Q Consensus 458 gILADeMGLGKTlq-aIall~~l~~~------------~~~~gp~LIV~P~-sll~nW~~Ei~k~~--p~l~v~~y~G~~ 521 (1196)
.+=|.|+|.|||+. .|-++..+.+. .....--|||+|. -+.+|-.+.|...+ +++++....|+-
T Consensus 222 IlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGL 301 (731)
T KOG0347|consen 222 ILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGL 301 (731)
T ss_pred cccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechh
Confidence 35588999999985 34444422211 1111126999995 56778888888766 568888888874
Q ss_pred hhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh----hhhcc-CccEEEECCCcccc
Q 000994 522 QERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK----YFRRV-KWQYMVLDEAQAIK 577 (1196)
Q Consensus 522 ~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~----~l~~~-~w~~VIlDEAH~iK 577 (1196)
...+.- ++.+ ...+|||.|...+..-.. .+.++ +..++|||||.++-
T Consensus 302 avqKQq-------RlL~--~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmv 353 (731)
T KOG0347|consen 302 AVQKQQ-------RLLN--QRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMV 353 (731)
T ss_pred HHHHHH-------HHHh--cCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHh
Confidence 433221 1111 246899999888755322 23332 45789999999984
No 175
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.62 E-value=0.1 Score=61.50 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=31.4
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
++--..|.|||+.++.++..+.... .....+++|+...+.+...+
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~~-~~~~~~~l~~n~~l~~~l~~ 49 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNSE-EGKKVLYLCGNHPLRNKLRE 49 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhccc-cCCceEEEEecchHHHHHHH
Confidence 4555699999999999998882111 12467888887776665544
No 176
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.60 E-value=0.14 Score=58.70 Aligned_cols=150 Identities=21% Similarity=0.205 Sum_probs=89.1
Q ss_pred CcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHH-HHHHHHHHHHhcccCCcEEEEeCCccHH-HHHHHHHHhC--CCC
Q 000994 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQ-AMAFLAHLAEEKNIWGPFLVVAPASVLN-NWADEISRFC--PDL 512 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlq-aIall~~l~~~~~~~gp~LIV~P~sll~-nW~~Ei~k~~--p~l 512 (1196)
.-|-|...+-.++ .|..||=+.-+|.|||.. ++-.+..+. ..+..--.||++|..=+. |-.+.|.-.. -++
T Consensus 30 pTpiQ~~cIpkIL----eGrdcig~AkTGsGKT~AFaLPil~rLs-edP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 30 PTPIQQACIPKIL----EGRDCIGCAKTGSGKTAAFALPILNRLS-EDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCchHhhhhHHHh----cccccccccccCCCcchhhhHHHHHhhc-cCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 3567777776666 788899999999999974 222233333 222222358999975444 4444444322 356
Q ss_pred ccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcH------hhhhccCccEEEECCCccccCcccHHHHH
Q 000994 513 KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE------KYFRRVKWQYMVLDEAQAIKSSNSIRWKT 586 (1196)
Q Consensus 513 ~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~------~~l~~~~w~~VIlDEAH~iKn~~S~~~ka 586 (1196)
++.++.|+...- .... .-....|||++|.+.+.... ..+.-.+..++|+|||.++-+. .....
T Consensus 105 K~~vivGG~d~i---~qa~------~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~--~f~d~ 173 (442)
T KOG0340|consen 105 KVSVIVGGTDMI---MQAA------ILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAG--CFPDI 173 (442)
T ss_pred eEEEEEccHHHh---hhhh------hcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhcc--chhhH
Confidence 777776653221 1111 11245689999998874421 1222235578999999999665 23333
Q ss_pred HHh----c-cccceEEeecCC
Q 000994 587 LLS----F-NCRNRLLLTGTP 602 (1196)
Q Consensus 587 l~~----l-~~~~RllLTGTP 602 (1196)
|.. + ..+-.+++|+|-
T Consensus 174 L~~i~e~lP~~RQtLlfSATi 194 (442)
T KOG0340|consen 174 LEGIEECLPKPRQTLLFSATI 194 (442)
T ss_pred HhhhhccCCCccceEEEEeeh
Confidence 332 2 334679999994
No 177
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.28 E-value=0.23 Score=63.33 Aligned_cols=173 Identities=20% Similarity=0.184 Sum_probs=95.7
Q ss_pred CCCCCCCCCCcccCCchhh---ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEE
Q 000994 416 HNPSTMPVTSTVQTPELFK---GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVV 492 (1196)
Q Consensus 416 ~~~~~~~~~~~v~~P~~l~---~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV 492 (1196)
..|........+..|.... ..|-.-|+.|+...+...+ ..-|++. +|+|||-+..+++..|...+ +.+|+.
T Consensus 646 ~pP~f~~~~~~~~~p~~~~~~~~~LN~dQr~A~~k~L~aed--y~LI~GM-PGTGKTTtI~~LIkiL~~~g---kkVLLt 719 (1100)
T KOG1805|consen 646 KPPKFVDALSKVLIPKIKKIILLRLNNDQRQALLKALAAED--YALILGM-PGTGKTTTISLLIKILVALG---KKVLLT 719 (1100)
T ss_pred CCchhhcccccccCchhhHHHHhhcCHHHHHHHHHHHhccc--hheeecC-CCCCchhhHHHHHHHHHHcC---CeEEEE
Confidence 3344333333444554443 3788999999876665432 2335555 89999999988888887653 467777
Q ss_pred eC-CccHHHHHHHHHHhCCCCccccccCChhh-HHHHhhccCcc--------cccccCCCceEEEEehhhHHhcHhhhhc
Q 000994 493 AP-ASVLNNWADEISRFCPDLKTLPYWGGLQE-RMVLRKNINPK--------RLYRRDAGFHILITSYQLLVADEKYFRR 562 (1196)
Q Consensus 493 ~P-~sll~nW~~Ei~k~~p~l~v~~y~G~~~~-r~~l~~~~~~~--------~~~~~~~~~~VvItSYe~l~~d~~~l~~ 562 (1196)
+= .+.+.|-.--+..+.-. ++ --|.... ...+.+.-... .+........||.+|=--+ ....|..
T Consensus 720 syThsAVDNILiKL~~~~i~--~l-RLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi--~~plf~~ 794 (1100)
T KOG1805|consen 720 SYTHSAVDNILIKLKGFGIY--IL-RLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI--NHPLFVN 794 (1100)
T ss_pred ehhhHHHHHHHHHHhccCcc--ee-ecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC--Cchhhhc
Confidence 75 44577777666665421 11 1122111 11111110000 0001112233554442222 2445677
Q ss_pred cCccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCC
Q 000994 563 VKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQ 604 (1196)
Q Consensus 563 ~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiq 604 (1196)
.+|||+|+|||-.|--|-+ |--+.-.++.+|-|-+.|
T Consensus 795 R~FD~cIiDEASQI~lP~~-----LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 795 RQFDYCIIDEASQILLPLC-----LGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred cccCEEEEccccccccchh-----hhhhhhcceEEEeccccc
Confidence 7899999999987744422 333455677888887765
No 178
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.21 E-value=0.31 Score=61.32 Aligned_cols=139 Identities=16% Similarity=0.159 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc--CCcEEEEeCCccHHH-HHHHHHHhCCCCccc
Q 000994 439 EYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI--WGPFLVVAPASVLNN-WADEISRFCPDLKTL 515 (1196)
Q Consensus 439 pyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~--~gp~LIV~P~sll~n-W~~Ei~k~~p~l~v~ 515 (1196)
+.|..++...+ .+.-.+|.-..|.|||.++..++..+...... ...+++++|..--.. ..+-+......+..-
T Consensus 148 ~~Qk~A~~~al----~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALAL----KSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred HHHHHHHHHHh----hCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 79999987666 34567888899999999998888877654322 135889999765433 333333322111100
Q ss_pred cccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhc--------HhhhhccCccEEEECCCccccCcccHHHHHH
Q 000994 516 PYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD--------EKYFRRVKWQYMVLDEAQAIKSSNSIRWKTL 587 (1196)
Q Consensus 516 ~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d--------~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal 587 (1196)
.... ... .+-..|...+... ...-....+++||||||-.+-. ....+.+
T Consensus 224 -----~~~~----~~~------------~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~--~l~~~ll 280 (586)
T TIGR01447 224 -----EALI----AAL------------PSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL--PLMAKLL 280 (586)
T ss_pred -----hhhh----hcc------------ccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH--HHHHHHH
Confidence 0000 000 0000111111000 0001124689999999998843 3455556
Q ss_pred HhccccceEEeecCCCC
Q 000994 588 LSFNCRNRLLLTGTPIQ 604 (1196)
Q Consensus 588 ~~l~~~~RllLTGTPiq 604 (1196)
..++...|++|.|=|-|
T Consensus 281 ~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 281 KALPPNTKLILLGDKNQ 297 (586)
T ss_pred HhcCCCCEEEEECChhh
Confidence 66788889999998866
No 179
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.13 E-value=0.24 Score=63.80 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHccC---CCceEEEEecCc
Q 000994 1058 LQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR-KYRYLRLDGSSTIMDRRDMVRDFQHR---SDIFVFLLSTRA 1133 (1196)
Q Consensus 1058 L~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~r-g~~y~rLDGStk~~dR~~~V~dFq~~---~di~VfLLSTrA 1133 (1196)
...+.+.|.++...+.++|||+..-++|+.+.++|... ++. +...|. ..|..+++.|..+ ++--| |+.|.+
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~V-L~g~~s 594 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSV-LFGLQS 594 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeE-EEEecc
Confidence 44555555555445556899999999999998888643 333 444564 2588899888752 22334 666788
Q ss_pred cccccCccc--CCEEEEeCCCC-Ccc---h--------------------------HHHHHHhhhccCCCCcEEE
Q 000994 1134 GGLGINLTA--ADTVIFYESDW-NPT---L--------------------------DLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1134 GGlGINLTa--AdtVIfyDsdW-NPt---~--------------------------d~QAmdRahRiGQtK~VtV 1176 (1196)
-.+||++.. ...||+.-.++ +|. . -.||+||.-|-.+-+-|.|
T Consensus 595 f~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ 669 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVT 669 (697)
T ss_pred ccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEE
Confidence 899999964 67888876554 332 1 2377888888766665533
No 180
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.97 E-value=0.5 Score=46.61 Aligned_cols=55 Identities=27% Similarity=0.293 Sum_probs=32.6
Q ss_pred HHHHHHHhhhc--CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHH
Q 000994 444 GLQWLVNCYEQ--GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNW 501 (1196)
Q Consensus 444 gl~wL~~~~~~--~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW 501 (1196)
.++.+...... +...++.-+.|.|||..+-.++..+... ..+++.+........+
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~~~~~~ 62 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGL 62 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhhhhhhh
Confidence 33444443333 5567888999999998777666665421 2455655554444433
No 181
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=93.39 E-value=0.25 Score=66.57 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=71.5
Q ss_pred HhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccH-HHHHHHHHHhC--CCCccccccCChhhHHH
Q 000994 450 NCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL-NNWADEISRFC--PDLKTLPYWGGLQERMV 526 (1196)
Q Consensus 450 ~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll-~nW~~Ei~k~~--p~l~v~~y~G~~~~r~~ 526 (1196)
.....+.-.||+-++|.|||-|.=-++.... .+..+.+++.-|.-+. .....-+.+-. +-...+-|.-....
T Consensus 77 ~~l~~~~vvii~g~TGSGKTTqlPq~lle~~--~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~--- 151 (1283)
T TIGR01967 77 EAIAENQVVIIAGETGSGKTTQLPKICLELG--RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHD--- 151 (1283)
T ss_pred HHHHhCceEEEeCCCCCCcHHHHHHHHHHcC--CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCc---
Confidence 3344666789999999999998754443321 1222334444464442 23333333322 11111212100000
Q ss_pred HhhccCcccccccCCCceEEEEehhhHHhcHhh-hhccCccEEEECCCc-cccCcccHHH--HHHHhc-cccceEEeecC
Q 000994 527 LRKNINPKRLYRRDAGFHILITSYQLLVADEKY-FRRVKWQYMVLDEAQ-AIKSSNSIRW--KTLLSF-NCRNRLLLTGT 601 (1196)
Q Consensus 527 l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~-l~~~~w~~VIlDEAH-~iKn~~S~~~--kal~~l-~~~~RllLTGT 601 (1196)
. ....-.|.++|...+...... -.--.+++|||||+| +.-+..-... +.+... .....+++|||
T Consensus 152 -------~----~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSAT 220 (1283)
T TIGR01967 152 -------Q----VSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSAT 220 (1283)
T ss_pred -------c----cCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCC
Confidence 0 012346888998888654321 011367899999999 4656544332 223222 23356899999
Q ss_pred CC
Q 000994 602 PI 603 (1196)
Q Consensus 602 Pi 603 (1196)
.-
T Consensus 221 ld 222 (1283)
T TIGR01967 221 ID 222 (1283)
T ss_pred cC
Confidence 83
No 182
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.26 E-value=0.49 Score=61.14 Aligned_cols=135 Identities=20% Similarity=0.183 Sum_probs=81.4
Q ss_pred hccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCc
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLK 513 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~ 513 (1196)
...|-+-|.+++..+. .+.-.+|--..|.|||..+-+++..+....+ ..++++++|.........|..-. +...
T Consensus 321 ~~~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~v~l~ApTg~AA~~L~e~~g~-~a~T 394 (720)
T TIGR01448 321 RKGLSEEQKQALDTAI----QHKVVILTGGPGTGKTTITRAIIELAEELGG-LLPVGLAAPTGRAAKRLGEVTGL-TAST 394 (720)
T ss_pred CCCCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CceEEEEeCchHHHHHHHHhcCC-cccc
Confidence 3478999999998775 3446789999999999988777766654321 14788889987766655442110 0000
Q ss_pred cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhcccc
Q 000994 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCR 593 (1196)
Q Consensus 514 v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~ 593 (1196)
+. ..+. +. ... . ..... -.....++||||||+.+-. ......+..++..
T Consensus 395 ih---------~lL~--~~--------~~~--~------~~~~~--~~~~~~~llIvDEaSMvd~--~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 395 IH---------RLLG--YG--------PDT--F------RHNHL--EDPIDCDLLIVDESSMMDT--WLALSLLAALPDH 443 (720)
T ss_pred HH---------HHhh--cc--------CCc--c------chhhh--hccccCCEEEEeccccCCH--HHHHHHHHhCCCC
Confidence 00 0000 00 000 0 00000 0124578999999999843 2334455567778
Q ss_pred ceEEeecCCCCC
Q 000994 594 NRLLLTGTPIQN 605 (1196)
Q Consensus 594 ~RllLTGTPiqN 605 (1196)
.+++|-|=|-|-
T Consensus 444 ~rlilvGD~~QL 455 (720)
T TIGR01448 444 ARLLLVGDTDQL 455 (720)
T ss_pred CEEEEECccccc
Confidence 899999988663
No 183
>PRK04296 thymidine kinase; Provisional
Probab=93.13 E-value=0.17 Score=54.40 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=25.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P 494 (1196)
.++.-+||.|||..++.++..+.... ..++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEec
Confidence 36677899999999998887765432 46677755
No 184
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.76 E-value=0.27 Score=57.03 Aligned_cols=147 Identities=22% Similarity=0.322 Sum_probs=90.4
Q ss_pred cCCCeEEEeCCCCChHHHHHH--HH---HHHHHhcccCC-cEEEEeCCccH-HHHHHHHHHhC-CC-CccccccCChhhH
Q 000994 454 QGLNGILADEMGLGKTIQAMA--FL---AHLAEEKNIWG-PFLVVAPASVL-NNWADEISRFC-PD-LKTLPYWGGLQER 524 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIa--ll---~~l~~~~~~~g-p~LIV~P~sll-~nW~~Ei~k~~-p~-l~v~~y~G~~~~r 524 (1196)
+|.-+|-...+|.|||+.-+- ++ +.........+ .+||++|..-| .+-.-|..++- -+ ..+.+|.|....-
T Consensus 256 QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e 335 (629)
T KOG0336|consen 256 QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE 335 (629)
T ss_pred cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh
Confidence 777888889999999986431 11 11111112223 36888895543 45666766553 33 4455565543222
Q ss_pred HHHhhccCcccccccCCCceEEEEehhhHHhcH--hhhhccCccEEEECCCccccC--cccHHHHHHHhccccceEEeec
Q 000994 525 MVLRKNINPKRLYRRDAGFHILITSYQLLVADE--KYFRRVKWQYMVLDEAQAIKS--SNSIRWKTLLSFNCRNRLLLTG 600 (1196)
Q Consensus 525 ~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~--~~l~~~~w~~VIlDEAH~iKn--~~S~~~kal~~l~~~~RllLTG 600 (1196)
. ...+ ..+.+++|.|...+.... ..+.--...|+|||||.++-. ..-+..+.|+.++..+-.+||.
T Consensus 336 q--ie~l--------krgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTS 405 (629)
T KOG0336|consen 336 Q--IEDL--------KRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTS 405 (629)
T ss_pred H--HHHH--------hcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeec
Confidence 1 1111 246789999988775431 122223568999999999965 4567788899998888877777
Q ss_pred CCCCCChHHH
Q 000994 601 TPIQNNMAEL 610 (1196)
Q Consensus 601 TPiqN~l~EL 610 (1196)
.-....+..|
T Consensus 406 ATWP~~VrrL 415 (629)
T KOG0336|consen 406 ATWPEGVRRL 415 (629)
T ss_pred ccCchHHHHH
Confidence 6666665554
No 185
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.14 E-value=0.74 Score=58.16 Aligned_cols=141 Identities=15% Similarity=0.145 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcc-cCCcEEEEeCCccHHHHHHH-HHHhCCCCccc
Q 000994 438 KEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKN-IWGPFLVVAPASVLNNWADE-ISRFCPDLKTL 515 (1196)
Q Consensus 438 rpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~-~~gp~LIV~P~sll~nW~~E-i~k~~p~l~v~ 515 (1196)
-++|+.++.-.+ .+.-.+|.-.+|.|||.++..++..+..... ....+++++|..--..=..| +..-...+.+.
T Consensus 154 ~d~Qk~Av~~a~----~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 154 VDWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CHHHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 489999996555 3446788889999999999888887755322 12367888897654432222 22211111100
Q ss_pred cccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhc--------HhhhhccCccEEEECCCccccCcccHHHHHH
Q 000994 516 PYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD--------EKYFRRVKWQYMVLDEAQAIKSSNSIRWKTL 587 (1196)
Q Consensus 516 ~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d--------~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal 587 (1196)
. ..+. .+ ..-..|...+... ...-....+++||||||..+- .......+
T Consensus 230 ---~--~~~~----~~------------~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--~~lm~~ll 286 (615)
T PRK10875 230 ---D--EQKK----RI------------PEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--LPMMARLI 286 (615)
T ss_pred ---h--hhhh----cC------------CCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--HHHHHHHH
Confidence 0 0000 00 0000010101000 000122467999999999883 34455666
Q ss_pred HhccccceEEeecCCCCC
Q 000994 588 LSFNCRNRLLLTGTPIQN 605 (1196)
Q Consensus 588 ~~l~~~~RllLTGTPiqN 605 (1196)
..++...|++|-|=|-|-
T Consensus 287 ~al~~~~rlIlvGD~~QL 304 (615)
T PRK10875 287 DALPPHARVIFLGDRDQL 304 (615)
T ss_pred HhcccCCEEEEecchhhc
Confidence 778888999999998663
No 186
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.09 E-value=0.57 Score=59.47 Aligned_cols=44 Identities=25% Similarity=0.418 Sum_probs=38.4
Q ss_pred CchhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHH
Q 000994 430 PELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAM 473 (1196)
Q Consensus 430 P~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaI 473 (1196)
|-.|..+.++-|+.-+..++.......+|+|-+.+|.|||+.-|
T Consensus 15 ~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLL 58 (945)
T KOG1132|consen 15 PVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLL 58 (945)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHH
Confidence 44455678999999999999999999999999999999999754
No 187
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.05 E-value=0.33 Score=54.86 Aligned_cols=129 Identities=21% Similarity=0.227 Sum_probs=77.9
Q ss_pred eCCCCChHHHH-HHHHHHHHHhcccCCcEEEEeCCc----cHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcccc
Q 000994 462 DEMGLGKTIQA-MAFLAHLAEEKNIWGPFLVVAPAS----VLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRL 536 (1196)
Q Consensus 462 DeMGLGKTlqa-Iall~~l~~~~~~~gp~LIV~P~s----ll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~ 536 (1196)
.--|.|||-.- |-++..+..... .--.+|++|.. -..|-..|+.++.. +++.+-.|+..-|..+
T Consensus 129 aKNGTGKT~a~~IP~Lekid~~~~-~IQ~~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI--------- 197 (459)
T KOG0326|consen 129 AKNGTGKTAAYCIPVLEKIDPKKN-VIQAIILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDI--------- 197 (459)
T ss_pred ccCCCCCccceechhhhhcCcccc-ceeEEEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccce---------
Confidence 34799999742 222322221111 12468899943 25678888999885 8888888876554332
Q ss_pred cccCCCceEEEEehhhHHhcHhh--hhccCccEEEECCCccccCcccH--HHHHHHhc-cccceEEeecC
Q 000994 537 YRRDAGFHILITSYQLLVADEKY--FRRVKWQYMVLDEAQAIKSSNSI--RWKTLLSF-NCRNRLLLTGT 601 (1196)
Q Consensus 537 ~~~~~~~~VvItSYe~l~~d~~~--l~~~~w~~VIlDEAH~iKn~~S~--~~kal~~l-~~~~RllLTGT 601 (1196)
.+-....|++|.|...+....+. -.--+...+|+|||..+-+..-. ..+.+.-+ +.+..++.|||
T Consensus 198 ~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySAT 267 (459)
T KOG0326|consen 198 MRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSAT 267 (459)
T ss_pred eeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecc
Confidence 23346789999999988654321 11124678999999988664332 22223333 44455667777
No 188
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.80 E-value=0.38 Score=57.78 Aligned_cols=130 Identities=17% Similarity=0.176 Sum_probs=92.6
Q ss_pred cccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHH----HHHHHhCCC----cEEEEeCCCCHHHHHHHHHHHccCCCce
Q 000994 1054 DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNIL----EDYMNYRKY----RYLRLDGSSTIMDRRDMVRDFQHRSDIF 1125 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlL----ee~L~~rg~----~y~rLDGStk~~dR~~~V~dFq~~~di~ 1125 (1196)
.+.|+.-...++.++...|-|+|-|+-..+...++ .+.|..-+- ..+.+.|.-..+|||++-.+.-. +..
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~-G~L- 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG-GKL- 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC-Cee-
Confidence 37788888889999999999999999887764432 222211111 11223456667899998877644 344
Q ss_pred EEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHH
Q 000994 1126 VFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFS 1187 (1196)
Q Consensus 1126 VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEE 1187 (1196)
.=+++|.|.-+||++-.-|.||.+--+..-+.-.|-.|||+|-.. --.+|| .+..+.|+.
T Consensus 585 ~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk-~SLavy-va~~~PVDQ 644 (1034)
T KOG4150|consen 585 CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK-PSLAVY-VAFLGPVDQ 644 (1034)
T ss_pred eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC-CceEEE-EEeccchhh
Confidence 347899999999999999999999999999999999999998543 224443 333444544
No 189
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=90.99 E-value=0.87 Score=47.88 Aligned_cols=102 Identities=21% Similarity=0.253 Sum_probs=64.4
Q ss_pred hhCCCeEEEEecchHHHHHHHHHHHhCC----CcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC--ccccccCccc
Q 000994 1069 RAENHRVLLFAQMTKMLNILEDYMNYRK----YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR--AGGLGINLTA 1142 (1196)
Q Consensus 1069 k~~ghKVLIFSQ~t~mlDlLee~L~~rg----~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr--AGGlGINLTa 1142 (1196)
...+.++|||+..-++++.+.+++.... +.. ...+ ..++..++++|..+.+ .+|+++. .-.+|||+..
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v-~~q~---~~~~~~~l~~~~~~~~--~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPV-FVQG---SKSRDELLEEFKRGEG--AILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCE-EEST---CCHHHHHHHHHCCSSS--EEEEEETTSCCGSSS--EC
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhccccccee-eecC---cchHHHHHHHHHhccC--eEEEEEecccEEEeecCCC
Confidence 3456899999999999999999998764 322 2223 2479999999988444 4455555 7889999984
Q ss_pred --CCEEEEeCCCC-Ccc---h--------------------------HHHHHHhhhccCCCCcEEE
Q 000994 1143 --ADTVIFYESDW-NPT---L--------------------------DLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1143 --AdtVIfyDsdW-NPt---~--------------------------d~QAmdRahRiGQtK~VtV 1176 (1196)
+..||+.-.++ +|. + -.||+||+-|-..-+-+.|
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 77888887775 332 1 1388999988766544443
No 190
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=90.99 E-value=0.096 Score=60.14 Aligned_cols=132 Identities=27% Similarity=0.397 Sum_probs=73.9
Q ss_pred eCCCCChHHH----HHHHHHHHHH---hcccCCcE-EEEeCCccHH-HHHHHHHHh--------CCCCccccccCChhhH
Q 000994 462 DEMGLGKTIQ----AMAFLAHLAE---EKNIWGPF-LVVAPASVLN-NWADEISRF--------CPDLKTLPYWGGLQER 524 (1196)
Q Consensus 462 DeMGLGKTlq----aIall~~l~~---~~~~~gp~-LIV~P~sll~-nW~~Ei~k~--------~p~l~v~~y~G~~~~r 524 (1196)
.-+|.|||+. +|.|...--- .....||+ |||||..-|. |-.+-+..| .|.++.....|+...+
T Consensus 214 AfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~ 293 (610)
T KOG0341|consen 214 AFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVR 293 (610)
T ss_pred EeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHH
Confidence 3489999975 2333221100 01112564 9999976544 333333333 2677777777776555
Q ss_pred HHHhhccCcccccccCCCceEEEEehhhHHhc--HhhhhccCccEEEECCCccccCcccH-HHHHHHh-ccc-cceEEee
Q 000994 525 MVLRKNINPKRLYRRDAGFHILITSYQLLVAD--EKYFRRVKWQYMVLDEAQAIKSSNSI-RWKTLLS-FNC-RNRLLLT 599 (1196)
Q Consensus 525 ~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d--~~~l~~~~w~~VIlDEAH~iKn~~S~-~~kal~~-l~~-~~RllLT 599 (1196)
..+... ..+.|+|+.|...+..- .+.+.---..|+.+|||.++-.-.-. -.+.+.. |++ +..||.|
T Consensus 294 eql~~v---------~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFS 364 (610)
T KOG0341|consen 294 EQLDVV---------RRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFS 364 (610)
T ss_pred HHHHHH---------hcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeee
Confidence 433221 14678999999887552 22222223568999999998553221 1233333 333 4568888
Q ss_pred cCC
Q 000994 600 GTP 602 (1196)
Q Consensus 600 GTP 602 (1196)
+|.
T Consensus 365 ATM 367 (610)
T KOG0341|consen 365 ATM 367 (610)
T ss_pred ccc
Confidence 885
No 191
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.94 E-value=0.65 Score=45.19 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
...+|.-.+|.|||..+..++..+.... ..++++.+......|...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~ 48 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQ 48 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHH
Confidence 3567888999999999988887765432 257777776655554443
No 192
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=90.81 E-value=0.79 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=20.4
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
+.+|.-++|+|||..|-++...+..
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4589999999999999877766644
No 193
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.51 E-value=1 Score=57.44 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhcCC--Ce-EEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~--gg-ILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...++.|.+.+.++. .. ||.-..|+|||..+..|...+.+.
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4555555555555543 34 788999999999999998888654
No 194
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.43 E-value=0.68 Score=54.32 Aligned_cols=130 Identities=19% Similarity=0.185 Sum_probs=79.4
Q ss_pred CCCCChHHHH-HHHHHHHHHhcccCCcEEEEeCCccH-HH---HHHHHHHhCCCCccccccCChhhHHHHhhccCccccc
Q 000994 463 EMGLGKTIQA-MAFLAHLAEEKNIWGPFLVVAPASVL-NN---WADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLY 537 (1196)
Q Consensus 463 eMGLGKTlqa-Iall~~l~~~~~~~gp~LIV~P~sll-~n---W~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~ 537 (1196)
=+|.|||..- |-.+..++......-..||+.|..=| .| -..++.+++.--.++.|+|+..+.....-
T Consensus 66 rtgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l-------- 137 (529)
T KOG0337|consen 66 RTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILL-------- 137 (529)
T ss_pred ecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHh--------
Confidence 4789999753 33344444332222378999996533 23 55666666644444567776555433211
Q ss_pred ccCCCceEEEEehhhHHhcHh--hhhccCccEEEECCCccccC--cccHHHHHHHhcc-ccceEEeecCC
Q 000994 538 RRDAGFHILITSYQLLVADEK--YFRRVKWQYMVLDEAQAIKS--SNSIRWKTLLSFN-CRNRLLLTGTP 602 (1196)
Q Consensus 538 ~~~~~~~VvItSYe~l~~d~~--~l~~~~w~~VIlDEAH~iKn--~~S~~~kal~~l~-~~~RllLTGTP 602 (1196)
..+.|||+.|...+.-... .+.--...|||+|||.+|-. ..-+..+.+.+++ .+-.+++|||-
T Consensus 138 --~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatl 205 (529)
T KOG0337|consen 138 --NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL 205 (529)
T ss_pred --ccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC
Confidence 1356899988877643221 12223467999999999854 3456677777774 45779999995
No 195
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=89.84 E-value=76 Score=41.44 Aligned_cols=113 Identities=18% Similarity=0.152 Sum_probs=90.3
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
+.-.|..+....+.+....|..|||-+-....-..+...|..+|+++..|+-.-. .|..-+-.+--. .-..-++|.
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~--~gaVTiATN 485 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQ--PGAVTIATN 485 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCC--CCccccccc
Confidence 5578999999999999999999999999999999999999999999988887655 555555554322 223345889
Q ss_pred ccccccCccc-CC----------EEEEeCCCCCcchHHHHHHhhhccC
Q 000994 1133 AGGLGINLTA-AD----------TVIFYESDWNPTLDLQAMDRAHRLG 1169 (1196)
Q Consensus 1133 AGGlGINLTa-Ad----------tVIfyDsdWNPt~d~QAmdRahRiG 1169 (1196)
-+|.|-++.- .+ +||=-+-.=+--+|.|--||++|.|
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 9999988653 33 5777777777888999999999999
No 196
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=89.48 E-value=0.31 Score=64.16 Aligned_cols=181 Identities=26% Similarity=0.312 Sum_probs=100.8
Q ss_pred hccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCC--hHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhC-C
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLG--KTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFC-P 510 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLG--KTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~-p 510 (1196)
...+.+||.....-..... .....++++.|+| ||+.+..+........ ....+++++|..+..+|..|...+. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (866)
T COG0553 82 RFILIPHQLDIALEVLNEL--ALRVLIADEVGLGDLKTIEAGAILKELLLRG-EIKRVLILVPKTLRAQWVVELLEKFNI 158 (866)
T ss_pred ccccCcchhhhhhhhhhhh--hhchhhcccccccccccccccccchHhhhhh-hhccceeccchHHHHHHHHHhhhhccc
Confidence 3456677776654333222 2237889999999 8998877665554432 2368899999999999999987653 1
Q ss_pred CCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhc----HhhhhccCc---cEEEECCCccccCcc---
Q 000994 511 DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD----EKYFRRVKW---QYMVLDEAQAIKSSN--- 580 (1196)
Q Consensus 511 ~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d----~~~l~~~~w---~~VIlDEAH~iKn~~--- 580 (1196)
...++...+.......... ..+ ......++.+++..... ...+....| +++++||+|.+.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (866)
T COG0553 159 RLAVLDKEGLRYLLKQYDA-YNP------FSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTR 231 (866)
T ss_pred cchhhhhhhhhhhhhhhcc-ccc------ccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccc
Confidence 2222211111110000000 000 00000033444443332 223344456 899999999997742
Q ss_pred ------cHHHHHHHhcc--cc------ceEEeecCCCCCChHHHHHHHHhhCCCCCCC
Q 000994 581 ------SIRWKTLLSFN--CR------NRLLLTGTPIQNNMAELWALLHFIMPTLFDS 624 (1196)
Q Consensus 581 ------S~~~kal~~l~--~~------~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s 624 (1196)
......+.... .. ....+++||......++++...++.+..+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 232 KLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred cccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 22333333221 11 2347899999988888877777777666554
No 197
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=89.30 E-value=1.3 Score=51.42 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHHHhhhcCC-CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc
Q 000994 437 LKEYQLKGLQWLVNCYEQGL-NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS 496 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~~~~-ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s 496 (1196)
.--+|.-++.-|+. ... =..|.-.-|.|||+-|+|.-.+--......+.++|--|..
T Consensus 229 rn~eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~v 286 (436)
T COG1875 229 RNAEQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTV 286 (436)
T ss_pred ccHHHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCc
Confidence 34488888877663 222 2567778999999998877655444444456666655543
No 198
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.74 E-value=1.9 Score=52.72 Aligned_cols=42 Identities=29% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhcCC-C--eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGL-N--GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~-g--gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...+..|.+....+. + -|+.-+.|.|||..|..++..+...
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4444444444444443 2 3899999999999999998887654
No 199
>PLN03025 replication factor C subunit; Provisional
Probab=88.71 E-value=3.3 Score=48.26 Aligned_cols=41 Identities=27% Similarity=0.259 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhcC--CCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 441 QLKGLQWLVNCYEQG--LNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~--~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
|.+.+.+|......+ .+-+|.-..|.|||..+.+++..+..
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 333444444333333 24689999999999999998877753
No 200
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.55 E-value=0.22 Score=52.61 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=26.3
Q ss_pred CCceEEEEehhhHHhcHhh--h--hccCccEEEECCCccccC
Q 000994 541 AGFHILITSYQLLVADEKY--F--RRVKWQYMVLDEAQAIKS 578 (1196)
Q Consensus 541 ~~~~VvItSYe~l~~d~~~--l--~~~~w~~VIlDEAH~iKn 578 (1196)
...+|||++|..+...... + ...+-.+||+||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3468999999999876321 2 123557899999999944
No 201
>PHA02533 17 large terminase protein; Provisional
Probab=88.40 E-value=1.6 Score=54.43 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=79.3
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHH-HHHHHHHHhC---C
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN-NWADEISRFC---P 510 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~-nW~~Ei~k~~---p 510 (1196)
..|.|+|..-+..|. .+.-.++.-.=..|||..+.+++.+.....+. ..+++++|..--. .=-+.+.... |
T Consensus 58 f~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~-~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFNKD-KNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 468999999888764 12233566667899999988776655543322 3677778832211 1113333222 2
Q ss_pred CCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHh-
Q 000994 511 DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS- 589 (1196)
Q Consensus 511 ~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~- 589 (1196)
.+.-. +. ...+...+.-. .+..|.+.+ .+....+....+++|+||+|.+++.. ..+.++..
T Consensus 133 ~l~~~---~i--------~~~~~~~I~l~-NGS~I~~ls-----s~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~ 194 (534)
T PHA02533 133 DFLQP---GI--------VEWNKGSIELE-NGSKIGAYA-----SSPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPV 194 (534)
T ss_pred HHhhc---ce--------eecCccEEEeC-CCCEEEEEe-----CCCCccCCCCCceEEEeccccCCCHH-HHHHHHHHH
Confidence 21000 00 00000011001 111221211 12233566678899999999997753 33333332
Q ss_pred cc--ccceEEeecCCC-CCChHHHHHH
Q 000994 590 FN--CRNRLLLTGTPI-QNNMAELWAL 613 (1196)
Q Consensus 590 l~--~~~RllLTGTPi-qN~l~EL~sL 613 (1196)
+. ...++++..||- .|...++|.-
T Consensus 195 lasg~~~r~iiiSTp~G~n~fye~~~~ 221 (534)
T PHA02533 195 ISSGRSSKIIITSTPNGLNHFYDIWTA 221 (534)
T ss_pred HHcCCCceEEEEECCCchhhHHHHHHH
Confidence 22 224688888995 2444444443
No 202
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=88.17 E-value=1.2 Score=53.76 Aligned_cols=128 Identities=27% Similarity=0.436 Sum_probs=78.9
Q ss_pred CcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHH-H---HHHHHHHH---H-hcccCCc-EEEEeCCccHH-HHHHHHH
Q 000994 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQ-A---MAFLAHLA---E-EKNIWGP-FLVVAPASVLN-NWADEIS 506 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlq-a---Iall~~l~---~-~~~~~gp-~LIV~P~sll~-nW~~Ei~ 506 (1196)
.-|-|..++--++ +...-|...|+|.|||.- . +..|..+. + ...+.|| .+|++|.-.|. |-..|-.
T Consensus 268 ptpIqR~aipl~l----Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~ 343 (673)
T KOG0333|consen 268 PTPIQRQAIPLGL----QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETN 343 (673)
T ss_pred CchHHHhhccchh----ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHH
Confidence 3456666665333 777889999999999942 2 23333332 1 1333455 47778976655 5777888
Q ss_pred HhCC--CCccccccCChh-hHHHHhhccCcccccccCCCceEEEEehhhHHhc--HhhhhccCccEEEECCCccccC
Q 000994 507 RFCP--DLKTLPYWGGLQ-ERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD--EKYFRRVKWQYMVLDEAQAIKS 578 (1196)
Q Consensus 507 k~~p--~l~v~~y~G~~~-~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d--~~~l~~~~w~~VIlDEAH~iKn 578 (1196)
+|.- +.+++...|... +-.. +.-..+++|+|.|...+... ..+|..-...|||+|||.++-.
T Consensus 344 kf~~~lg~r~vsvigg~s~EEq~----------fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiD 410 (673)
T KOG0333|consen 344 KFGKPLGIRTVSVIGGLSFEEQG----------FQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMID 410 (673)
T ss_pred HhcccccceEEEEecccchhhhh----------hhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhc
Confidence 8862 345555545321 1110 11125688999999988654 3345555778999999998843
No 203
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.68 E-value=1.2 Score=56.74 Aligned_cols=74 Identities=24% Similarity=0.285 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHhhhcCC-CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHHHHHHhCCCCccc
Q 000994 438 KEYQLKGLQWLVNCYEQGL-NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISRFCPDLKTL 515 (1196)
Q Consensus 438 rpyQl~gl~wL~~~~~~~~-ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~Ei~k~~p~l~v~ 515 (1196)
.-.|-.++.-|.+....+. .-+|.--.|.|||+++..++..+ .+|+|||+|.-. ..||.+|++.|+|+-.|.
T Consensus 11 ~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~------~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~ 84 (655)
T TIGR00631 11 AGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV------NRPTLVIAHNKTLAAQLYNEFKEFFPENAVE 84 (655)
T ss_pred ChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHhCCCCeEE
Confidence 3467778877877776553 34577779999999988776543 269999999665 568999999999875454
Q ss_pred cc
Q 000994 516 PY 517 (1196)
Q Consensus 516 ~y 517 (1196)
.|
T Consensus 85 ~f 86 (655)
T TIGR00631 85 YF 86 (655)
T ss_pred EE
Confidence 33
No 204
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=87.62 E-value=3.7 Score=52.64 Aligned_cols=113 Identities=17% Similarity=0.244 Sum_probs=81.1
Q ss_pred HHHHHHHHH-hhCCCeEEEEecchHHHHHHHHHHHhCCCc-EEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccc
Q 000994 1060 TLDILLKRL-RAENHRVLLFAQMTKMLNILEDYMNYRKYR-YLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLG 1137 (1196)
Q Consensus 1060 ~Ld~LL~~L-k~~ghKVLIFSQ~t~mlDlLee~L~~rg~~-y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlG 1137 (1196)
.+...|..+ ...+.++|||+..-++|..+.++|...... .+..-|... +..+++.|....+. .|++.+..-.+|
T Consensus 466 ~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~EG 541 (654)
T COG1199 466 KLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWEG 541 (654)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccCc
Confidence 333333333 344559999999999999999999887663 455555554 55999999986665 778888999999
Q ss_pred cCccc--CCEEEEeCCCC-Ccc-----------------------------hHHHHHHhhhccCCCCcEEE
Q 000994 1138 INLTA--ADTVIFYESDW-NPT-----------------------------LDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1138 INLTa--AdtVIfyDsdW-NPt-----------------------------~d~QAmdRahRiGQtK~VtV 1176 (1196)
||+.. ...||+.--++ ||. .-.||+||+.|-=+-+-|.|
T Consensus 542 VD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 542 VDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred ccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 99985 47788876665 221 23599999999555555554
No 205
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=87.49 E-value=4.1 Score=52.63 Aligned_cols=144 Identities=17% Similarity=0.137 Sum_probs=84.2
Q ss_pred hcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCC--CCccccccCChhhHHHHhh
Q 000994 453 EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCP--DLKTLPYWGGLQERMVLRK 529 (1196)
Q Consensus 453 ~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p--~l~v~~y~G~~~~r~~l~~ 529 (1196)
..+.+.|.+-.++-|||+.+=-++....-.. .+..|.+.|- +++..=..++..|.- ++.|-.|.|.....
T Consensus 238 ~e~~nliys~Pts~gktlvaeilml~~~l~~--rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~----- 310 (1008)
T KOG0950|consen 238 LERKNLIYSLPTSAGKTLVAEILMLREVLCR--RRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPE----- 310 (1008)
T ss_pred hcccceEEeCCCccchHHHHHHHHHHHHHHH--hhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCC-----
Confidence 3677899999999999998744443322111 1456778884 444444455555542 45666676642211
Q ss_pred ccCcccccccCCCceEEEEehhhHHhcHhhhhc----cCccEEEECCCccccCcc--cHHHHHHHhc----ccc--ceEE
Q 000994 530 NINPKRLYRRDAGFHILITSYQLLVADEKYFRR----VKWQYMVLDEAQAIKSSN--SIRWKTLLSF----NCR--NRLL 597 (1196)
Q Consensus 530 ~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~----~~w~~VIlDEAH~iKn~~--S~~~kal~~l----~~~--~Rll 597 (1196)
.....-+|.|+|-+.-..+...+-. ..-..||+||-|.|.... ...-..+..+ ... ..++
T Consensus 311 --------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIG 382 (1008)
T KOG0950|consen 311 --------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIG 382 (1008)
T ss_pred --------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEee
Confidence 1113346899999887666544432 235689999999995432 2222222222 222 3589
Q ss_pred eecCCCCCChHHHH
Q 000994 598 LTGTPIQNNMAELW 611 (1196)
Q Consensus 598 LTGTPiqN~l~EL~ 611 (1196)
+|+|-..|.+-.-|
T Consensus 383 MSATi~N~~lL~~~ 396 (1008)
T KOG0950|consen 383 MSATIPNNSLLQDW 396 (1008)
T ss_pred eecccCChHHHHHH
Confidence 99997665544333
No 206
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.26 E-value=1.9 Score=55.98 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.1
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHh
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|+.-+.|.|||..+-.|+..+.+.
T Consensus 42 LFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 42 LFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred EEECCCCCCHHHHHHHHHHhccCc
Confidence 789999999999999998887654
No 207
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=87.16 E-value=6 Score=43.16 Aligned_cols=43 Identities=26% Similarity=0.114 Sum_probs=28.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNW 501 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW 501 (1196)
+.+.+|.-+.|.|||..+.++....... +..++.++.+.+..|
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~----~~~~~~i~~~~~~~~ 80 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEER----GKSAIYLPLAELAQA 80 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEeHHHHHHh
Confidence 4456888999999999998887766543 222444454444444
No 208
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=87.01 E-value=3 Score=52.52 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHH---------hCCC
Q 000994 442 LKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISR---------FCPD 511 (1196)
Q Consensus 442 l~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k---------~~p~ 511 (1196)
++-+.-+.+.|.+....++++ =|-|||..+..++..+....+ -.++|.+|. ++...-..++.+ |+|.
T Consensus 175 ~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~ 251 (752)
T PHA03333 175 LREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPE 251 (752)
T ss_pred HHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHHHHHHHHHhccccccCC
Confidence 345677888888888887776 999999988777666664333 368888884 333333334333 3333
Q ss_pred Ccccc-ccCChhhHHHHhhccCcccccccCCCceEEEEehhhH----------HhcHhhhhccCccEEEECCCccccCcc
Q 000994 512 LKTLP-YWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLL----------VADEKYFRRVKWQYMVLDEAQAIKSSN 580 (1196)
Q Consensus 512 l~v~~-y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l----------~~d~~~l~~~~w~~VIlDEAH~iKn~~ 580 (1196)
...++ ..|+ ...|.+...... .+.....+...++++|+|||+.|..
T Consensus 252 ~~~iv~vkgg---------------------~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~-- 308 (752)
T PHA03333 252 EFKIVTLKGT---------------------DENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP-- 308 (752)
T ss_pred CceEEEeeCC---------------------eeEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH--
Confidence 21111 1111 111122111000 1112234446789999999999966
Q ss_pred cHHHHHHHhc--cccceEEeecCCC
Q 000994 581 SIRWKTLLSF--NCRNRLLLTGTPI 603 (1196)
Q Consensus 581 S~~~kal~~l--~~~~RllLTGTPi 603 (1196)
..+.++.-+ ....++++..||.
T Consensus 309 -~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 309 -GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred -HHHHHHHHHHccCCCceEEEeCCC
Confidence 333334332 2467777777775
No 209
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=86.85 E-value=2.2 Score=50.51 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhcCCC---eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 440 YQLKGLQWLVNCYEQGLN---GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~~~g---gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
-|.+++..|...+..|.. -++.-+.|+|||..+..++..+.+.
T Consensus 27 Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 27 GHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 355667778777777763 5889999999999999999888763
No 210
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=86.77 E-value=1.9 Score=50.16 Aligned_cols=41 Identities=20% Similarity=0.133 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhcCC--CeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 441 QLKGLQWLVNCYEQGL--NGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~--ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
|...+.++......+. ..++.-+.|.|||..+.++...+..
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3334555555444554 5689999999999999998887754
No 211
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=86.72 E-value=4 Score=54.05 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=50.7
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHH-HHH
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWAD-EIS 506 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~-Ei~ 506 (1196)
..||+|.+.+..+...+..+..+++-..+|+|||+..+.-+..... . ..+++|.||... -.||.. ++.
T Consensus 245 ~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~--~~~vvi~t~t~~Lq~Ql~~~~~~ 314 (850)
T TIGR01407 245 EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T--EKPVVISTNTKVLQSQLLEKDIP 314 (850)
T ss_pred ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C--CCeEEEEeCcHHHHHHHHHHHHH
Confidence 5799999999988888878877888889999999987655444333 1 258999999654 567754 443
No 212
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=86.58 E-value=1.5 Score=50.25 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=25.9
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhccc-CCcEEEEe
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVA 493 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~-~gp~LIV~ 493 (1196)
.+.+|.-++|.|||..|.++...+...... .++++.+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 356888999999999998877776553322 23555444
No 213
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=86.42 E-value=1.5 Score=54.94 Aligned_cols=171 Identities=18% Similarity=0.252 Sum_probs=102.6
Q ss_pred CCchhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHHH-HH
Q 000994 429 TPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADE-IS 506 (1196)
Q Consensus 429 ~P~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~E-i~ 506 (1196)
.|........|||.+-+.-|.... -....+.-..-+|||...+.++.+.....+ +|+|+|.|.-- ...|..+ |.
T Consensus 9 ~pG~w~~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P--~~~l~v~Pt~~~a~~~~~~rl~ 84 (557)
T PF05876_consen 9 EPGPWRTDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQDP--GPMLYVQPTDDAAKDFSKERLD 84 (557)
T ss_pred CCCCCCCCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeCC--CCEEEEEEcHHHHHHHHHHHHH
Confidence 345566789999999887665422 234566667889999988888888776544 79999999654 5567654 44
Q ss_pred Hh---CCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccc----cCc
Q 000994 507 RF---CPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAI----KSS 579 (1196)
Q Consensus 507 k~---~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~i----Kn~ 579 (1196)
.. +|.++-.+.... .+ ..-+ ........+-.+.+..... ...|.+....++++||...+ ++.
T Consensus 85 Pmi~~sp~l~~~~~~~~--~~----~~~~-t~~~k~f~gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p~~~~~e 153 (557)
T PF05876_consen 85 PMIRASPVLRRKLSPSK--SR----DSGN-TILYKRFPGGFLYLVGANS----PSNLRSRPARYLLLDEVDRYPDDVGGE 153 (557)
T ss_pred HHHHhCHHHHHHhCchh--hc----ccCC-chhheecCCCEEEEEeCCC----CcccccCCcCEEEEechhhccccCccC
Confidence 33 233332221100 00 0000 0011111222344444433 34577888999999999988 233
Q ss_pred ccHHH---HHHHhccccceEEeecCCCCCChHHHHHHH
Q 000994 580 NSIRW---KTLLSFNCRNRLLLTGTPIQNNMAELWALL 614 (1196)
Q Consensus 580 ~S~~~---kal~~l~~~~RllLTGTPiqN~l~EL~sLL 614 (1196)
.+... +-...+....++++..||.......++.+.
T Consensus 154 Gdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 154 GDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred CCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 33333 334455677899999999887655554443
No 214
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.28 E-value=2.1 Score=50.87 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhhcCC--Ce-EEEeCCCCChHHHHHHHHHHHHH
Q 000994 440 YQLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~~~--gg-ILADeMGLGKTlqaIall~~l~~ 481 (1196)
-|...+..+.+.+..+. .+ ++.-+.|+|||..+-+++..+..
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 45555555555555442 34 89999999999999888877754
No 215
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=86.24 E-value=2.9 Score=37.47 Aligned_cols=37 Identities=35% Similarity=0.484 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000994 254 IRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALK 290 (1196)
Q Consensus 254 ~~~~r~~re~~~~wk~~e~~~~~~~~~~eke~~~~~k 290 (1196)
.+|+++++.+..||...++++....++++++.+.+++
T Consensus 36 ~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~ 72 (73)
T PF07529_consen 36 ARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALK 72 (73)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 5688899999999999999988887777777765543
No 216
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.23 E-value=0.8 Score=50.29 Aligned_cols=82 Identities=26% Similarity=0.391 Sum_probs=64.2
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
+.+..|-.+|..||.-|.=+ .|+||-..+.- +. |+. + |.+|
T Consensus 265 Lke~eKNrkl~dLLd~LeFN--QVvIFvKsv~R------------------------------l~-f~k----r--~vat 305 (387)
T KOG0329|consen 265 LKENEKNRKLNDLLDVLEFN--QVVIFVKSVQR------------------------------LS-FQK----R--LVAT 305 (387)
T ss_pred hhhhhhhhhhhhhhhhhhhc--ceeEeeehhhh------------------------------hh-hhh----h--hHHh
Confidence 34567777888888777543 78888765432 11 533 1 6688
Q ss_pred CccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCC
Q 000994 1132 RAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK 1172 (1196)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK 1172 (1196)
..-|-|++....|-||.||.+-.+.....+.+||+|.|-+-
T Consensus 306 ~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 306 DLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 99999999999999999999999999999999999999653
No 217
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.22 E-value=6 Score=44.01 Aligned_cols=26 Identities=23% Similarity=0.084 Sum_probs=20.5
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
..-+|.-..|.|||--+.++...+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35688889999999888877766553
No 218
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.01 E-value=0.93 Score=55.31 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=59.0
Q ss_pred eCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHHhCC----CCccccccCChhhHHHHhhccCcccc
Q 000994 462 DEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCP----DLKTLPYWGGLQERMVLRKNINPKRL 536 (1196)
Q Consensus 462 DeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k~~p----~l~v~~y~G~~~~r~~l~~~~~~~~~ 536 (1196)
..+|.|||+++.++|.++...+- +.+|..|- ++++..-...|..-+. --.++.|.|...+-..+ ..++
T Consensus 4 matgsgkt~~ma~lil~~y~kgy--r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkv-n~fs---- 76 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKGY--RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKV-NNFS---- 76 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhch--hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeee-cccC----
Confidence 45899999999999999887643 57787776 5555443333221110 01112222322111100 1111
Q ss_pred cccCCCceEEEEehhhHHhcHhh-------hhccC--ccEEEECCCcccc
Q 000994 537 YRRDAGFHILITSYQLLVADEKY-------FRRVK--WQYMVLDEAQAIK 577 (1196)
Q Consensus 537 ~~~~~~~~VvItSYe~l~~d~~~-------l~~~~--w~~VIlDEAH~iK 577 (1196)
.......|+.||-+.+..+.-. +...+ --+++-||||++.
T Consensus 77 -ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 77 -EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred -ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 1235567999999988776321 22222 2245669999994
No 219
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.89 E-value=7.5 Score=46.60 Aligned_cols=131 Identities=12% Similarity=0.065 Sum_probs=70.5
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcc-cCCcEEEEeCCc--cHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCc
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKN-IWGPFLVVAPAS--VLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINP 533 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~-~~gp~LIV~P~s--ll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~ 533 (1196)
..++.-..|.|||-++.-+++.+..... ...++.+|+=.. .-..|+ +..|+--+.+
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgv------------------- 234 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGI------------------- 234 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCc-------------------
Confidence 3467778999999988777766553321 123556655432 111222 4444311111
Q ss_pred ccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccH---HHHHHHhcc--ccceEEeecCCCCCChH
Q 000994 534 KRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSI---RWKTLLSFN--CRNRLLLTGTPIQNNMA 608 (1196)
Q Consensus 534 ~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~---~~kal~~l~--~~~RllLTGTPiqN~l~ 608 (1196)
++ .++.+|..+......+ -+.++||+|++.+....... ....+.... ...-|+|++|-=++.+.
T Consensus 235 --------pv-~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 235 --------PV-KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred --------ce-EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 00 2223444444333333 36899999999987532211 112222222 24568899998888888
Q ss_pred HHHHHHHhhCC
Q 000994 609 ELWALLHFIMP 619 (1196)
Q Consensus 609 EL~sLL~FL~P 619 (1196)
+.+.-...+.+
T Consensus 304 ~~~~~~~~~~~ 314 (388)
T PRK12723 304 EIFHQFSPFSY 314 (388)
T ss_pred HHHHHhcCCCC
Confidence 77765554433
No 220
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=85.51 E-value=1.9 Score=55.20 Aligned_cols=126 Identities=16% Similarity=0.201 Sum_probs=71.4
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHHHhC-CCCccccccCChhhHHHHhhccCcccc
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFC-PDLKTLPYWGGLQERMVLRKNINPKRL 536 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~k~~-p~l~v~~y~G~~~~r~~l~~~~~~~~~ 536 (1196)
++=..||.|||-..+-.+...... ....+|||.= .+++.+-..-|.... +++ +.|......
T Consensus 53 vVRSpMGTGKTtaLi~wLk~~l~~--~~~~VLvVShRrSL~~sL~~rf~~~~l~gF--v~Y~d~~~~------------- 115 (824)
T PF02399_consen 53 VVRSPMGTGKTTALIRWLKDALKN--PDKSVLVVSHRRSLTKSLAERFKKAGLSGF--VNYLDSDDY------------- 115 (824)
T ss_pred EEECCCCCCcHHHHHHHHHHhccC--CCCeEEEEEhHHHHHHHHHHHHhhcCCCcc--eeeeccccc-------------
Confidence 666789999999888777665322 2257888865 566666666665432 222 122221000
Q ss_pred cccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccC-cccHH-------HHHHHhc--cccceEEeecCC
Q 000994 537 YRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKS-SNSIR-------WKTLLSF--NCRNRLLLTGTP 602 (1196)
Q Consensus 537 ~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn-~~S~~-------~kal~~l--~~~~RllLTGTP 602 (1196)
.-....++-+++..+.+.+....+- .+||+|||||+-.+-+ --|.+ ...+..+ +++..+++=||-
T Consensus 116 ~i~~~~~~rLivqIdSL~R~~~~~l-~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 116 IIDGRPYDRLIVQIDSLHRLDGSLL-DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred cccccccCeEEEEehhhhhcccccc-cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 0011246778888888766543311 1499999999854322 11211 2222222 688888888874
No 221
>PRK06526 transposase; Provisional
Probab=85.51 E-value=1.9 Score=48.55 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHH
Q 000994 441 QLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k 507 (1196)
++.+..|+. .+.+.+|.-..|.|||..+.++...+...+ .+++++ ....|.+++..
T Consensus 88 ~l~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~----t~~~l~~~l~~ 143 (254)
T PRK06526 88 HLGTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFA----TAAQWVARLAA 143 (254)
T ss_pred HHhcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHHCC---Cchhhh----hHHHHHHHHHH
Confidence 344556764 566889999999999999999887766432 233332 33457776643
No 222
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.49 E-value=2.1 Score=51.23 Aligned_cols=40 Identities=23% Similarity=0.126 Sum_probs=28.1
Q ss_pred hhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000994 451 CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1196)
Q Consensus 451 ~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P 494 (1196)
++.++.-.+|.-|.|.|||.|.=-++......+ ...|.|.
T Consensus 58 ~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~----~~~v~CT 97 (699)
T KOG0925|consen 58 LLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH----LTGVACT 97 (699)
T ss_pred HHhcCceEEEEecCCCCccccCcHHHHHHHHhh----ccceeec
Confidence 444666789999999999999866665544332 2567774
No 223
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.34 E-value=8.5 Score=46.34 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...+..|.+...++. .-|+.-..|.|||..|.++...+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444444555444442 24688999999999999998888654
No 224
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=85.32 E-value=2 Score=45.27 Aligned_cols=48 Identities=23% Similarity=0.231 Sum_probs=37.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHh
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~ 508 (1196)
.+++-++|.|||..++.++....... .+++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g---~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG---EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC---CcEEEEECCCCHHHHHHHHHHc
Confidence 36788999999999999988876432 5889998877777776666655
No 225
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=85.30 E-value=3.3 Score=53.69 Aligned_cols=133 Identities=23% Similarity=0.236 Sum_probs=78.7
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHH----HHHHHHHHhCCC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN----NWADEISRFCPD 511 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~----nW~~Ei~k~~p~ 511 (1196)
..++-|+-|.--|. .|.|--..+|=|||+++. +.+++..-.+ ..+-||++..-|. .|...+.+|. +
T Consensus 85 r~ydVQliGgl~Lh------~G~IAEM~TGEGKTL~at-lpaylnAL~G--kgVhVVTvNdYLA~RDae~m~~vy~~L-G 154 (939)
T PRK12902 85 RHFDVQLIGGMVLH------EGQIAEMKTGEGKTLVAT-LPSYLNALTG--KGVHVVTVNDYLARRDAEWMGQVHRFL-G 154 (939)
T ss_pred CcchhHHHhhhhhc------CCceeeecCCCChhHHHH-HHHHHHhhcC--CCeEEEeCCHHHHHhHHHHHHHHHHHh-C
Confidence 44667877764442 466888889999999753 3444433333 3567777755443 5999999987 5
Q ss_pred CccccccCC--hhhHHHHhhccCcccccccCCCceEEEEehhhHHhc---------HhhhhccCccEEEECCCccccCcc
Q 000994 512 LKTLPYWGG--LQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD---------EKYFRRVKWQYMVLDEAQAIKSSN 580 (1196)
Q Consensus 512 l~v~~y~G~--~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d---------~~~l~~~~w~~VIlDEAH~iKn~~ 580 (1196)
+.|-+..++ ..+|.. ....||+.+|-..+.-| ........++++||||+..|--.
T Consensus 155 Ltvg~i~~~~~~~err~-------------aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILID- 220 (939)
T PRK12902 155 LSVGLIQQDMSPEERKK-------------NYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILID- 220 (939)
T ss_pred CeEEEECCCCChHHHHH-------------hcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeec-
Confidence 555443332 122211 13456666665554222 11223357889999999876332
Q ss_pred cHHHHHHHhccccceEEeecCC
Q 000994 581 SIRWKTLLSFNCRNRLLLTGTP 602 (1196)
Q Consensus 581 S~~~kal~~l~~~~RllLTGTP 602 (1196)
.++.-|++||.+
T Consensus 221 ----------EArTPLIISg~~ 232 (939)
T PRK12902 221 ----------EARTPLIISGQV 232 (939)
T ss_pred ----------cCCCcccccCCC
Confidence 234457788765
No 226
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=85.27 E-value=1.8 Score=47.85 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=56.5
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHh
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~ 508 (1196)
..|||-|.+-+..|.+. ..+.|.++---||-|||-..+=+++.....+. .=+-||+|++++.+=.+-+..-
T Consensus 22 iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred ceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHH
Confidence 47999999999999864 45678899999999999988877777665433 3567889999999887777643
No 227
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=85.18 E-value=11 Score=45.90 Aligned_cols=127 Identities=14% Similarity=0.210 Sum_probs=95.0
Q ss_pred ccHHHHH-HHHHHHHh-h-CCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1055 SGKLQTL-DILLKRLR-A-ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1055 SgKL~~L-d~LL~~Lk-~-~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
..++... ..+|..+. . ...++|||-..=--.=.|..||...++.|+.+.=-++.++-..+-..|.. ++..++|.+=
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~-G~~~iLL~TE 358 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH-GRKPILLYTE 358 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc-CCceEEEEEh
Confidence 4566655 44788887 3 34789999664333335789999999999999999999999999999987 6889999998
Q ss_pred Cccc-cccCcccCCEEEEeCCCCCcchHHHHHHhhhccCC----CCcEEEEEeeeC
Q 000994 1132 RAGG-LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQ----TKDVSSWLKLCH 1182 (1196)
Q Consensus 1132 rAGG-lGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQ----tK~VtVYRLIt~ 1182 (1196)
|+.= -=..+-.+.+||||.|+=||.....-+.-...-.+ ....+|.-|.++
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 8732 23456789999999999999998887765544333 344566556665
No 228
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=85.10 E-value=4.9 Score=52.69 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=76.1
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccH---HHHHHHHHHhCCCC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL---NNWADEISRFCPDL 512 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll---~nW~~Ei~k~~p~l 512 (1196)
..++-|+-|---|. .|-|-=..+|=|||++|. +-+++..-.+ .|-++|-+-..|. ..|..-+-+|. ++
T Consensus 138 ~~ydVQLiGgivLh------~G~IAEM~TGEGKTLvat-lp~yLnAL~G-~gVHvVTvNDYLA~RDaewm~p~y~fl-GL 208 (1025)
T PRK12900 138 VPYDVQLIGGIVLH------SGKISEMATGEGKTLVST-LPTFLNALTG-RGVHVVTVNDYLAQRDKEWMNPVFEFH-GL 208 (1025)
T ss_pred cccchHHhhhHHhh------cCCccccCCCCCcchHhH-HHHHHHHHcC-CCcEEEeechHhhhhhHHHHHHHHHHh-CC
Confidence 34667887765554 245666778999999864 2233322222 2566776666664 36999999987 44
Q ss_pred ccccc-cC-ChhhHHHHhhccCcccccccCCCceEEEEehhhHHh---------cHhhhhccCccEEEECCCccccCccc
Q 000994 513 KTLPY-WG-GLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVA---------DEKYFRRVKWQYMVLDEAQAIKSSNS 581 (1196)
Q Consensus 513 ~v~~y-~G-~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~---------d~~~l~~~~w~~VIlDEAH~iKn~~S 581 (1196)
.|-+. ++ +..+|.. ...+||+-+|-.-+.- ....+-...+.+.||||+..+--.
T Consensus 209 tVg~i~~~~~~~~Rr~-------------aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvLID-- 273 (1025)
T PRK12900 209 SVGVILNTMRPEERRE-------------QYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVLID-- 273 (1025)
T ss_pred eeeeeCCCCCHHHHHH-------------hCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhhhc--
Confidence 44332 22 1222221 1233444444333322 223344467899999999765221
Q ss_pred HHHHHHHhccccceEEeecC
Q 000994 582 IRWKTLLSFNCRNRLLLTGT 601 (1196)
Q Consensus 582 ~~~kal~~l~~~~RllLTGT 601 (1196)
.++.-|++||.
T Consensus 274 ---------eARTPLIISgp 284 (1025)
T PRK12900 274 ---------EARTPLIISGP 284 (1025)
T ss_pred ---------cccCceEEeCC
Confidence 45667999984
No 229
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.02 E-value=0.49 Score=51.89 Aligned_cols=106 Identities=22% Similarity=0.338 Sum_probs=65.3
Q ss_pred EEEeCCCCChHHH-HHHHHHHHHHhcccCC--cEEEEeCCc-cHHHHHHHHH---HhCCCCccccccCChhhHHHHhhcc
Q 000994 459 ILADEMGLGKTIQ-AMAFLAHLAEEKNIWG--PFLVVAPAS-VLNNWADEIS---RFCPDLKTLPYWGGLQERMVLRKNI 531 (1196)
Q Consensus 459 ILADeMGLGKTlq-aIall~~l~~~~~~~g--p~LIV~P~s-ll~nW~~Ei~---k~~p~l~v~~y~G~~~~r~~l~~~~ 531 (1196)
+.-.-.|+|||.. +++.+..+ .+..| .+||+|-.. +..|-.+|.. ++.|+.++.++.|+....+.-.
T Consensus 83 lcqaksgmgktavfvl~tlqqi---epv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee--- 156 (387)
T KOG0329|consen 83 LCQAKSGMGKTAVFVLATLQQI---EPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEE--- 156 (387)
T ss_pred heecccCCCceeeeehhhhhhc---CCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHH---
Confidence 3444579999964 34434333 33333 568888743 4557777755 5569999999999754332111
Q ss_pred CcccccccCCCceEEEEehhhHHhcH--hhhhccCccEEEECCCccc
Q 000994 532 NPKRLYRRDAGFHILITSYQLLVADE--KYFRRVKWQYMVLDEAQAI 576 (1196)
Q Consensus 532 ~~~~~~~~~~~~~VvItSYe~l~~d~--~~l~~~~w~~VIlDEAH~i 576 (1196)
... ...|||+.|...+.... +.|.--.....|+||+..+
T Consensus 157 ----~lk--~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 157 ----LLK--NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred ----HHh--CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH
Confidence 111 25689999998775532 2333334567899999865
No 230
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=84.96 E-value=3.6 Score=48.81 Aligned_cols=140 Identities=19% Similarity=0.259 Sum_probs=75.1
Q ss_pred cCCCeEEEeCCCCChHHHH-HHHHHHHHHhccc----CCc-EEEEeCC-ccHHHHHHHHHH---hCC-CCccccccCChh
Q 000994 454 QGLNGILADEMGLGKTIQA-MAFLAHLAEEKNI----WGP-FLVVAPA-SVLNNWADEISR---FCP-DLKTLPYWGGLQ 522 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqa-Iall~~l~~~~~~----~gp-~LIV~P~-sll~nW~~Ei~k---~~p-~l~v~~y~G~~~ 522 (1196)
.|...+--.-+|.|||..- |-++..+...... .+| .+|++|. -+..|-...|.+ +|+ .++++-...+..
T Consensus 55 EgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~s 134 (569)
T KOG0346|consen 55 EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMS 134 (569)
T ss_pred cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 4445555567999999863 4444444433211 233 5888895 455566666654 454 445544432211
Q ss_pred hHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh---hhccCccEEEECCCccccCcccH-HHHHHH-hcc-ccceE
Q 000994 523 ERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY---FRRVKWQYMVLDEAQAIKSSNSI-RWKTLL-SFN-CRNRL 596 (1196)
Q Consensus 523 ~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~---l~~~~w~~VIlDEAH~iKn~~S~-~~kal~-~l~-~~~Rl 596 (1196)
+.. .+.. -....+|||+|...+...... ...-...++|+|||.-+-+..-. -.+.+. .+. .-..+
T Consensus 135 dsv-~~~~--------L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~ 205 (569)
T KOG0346|consen 135 DSV-NSVA--------LMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCF 205 (569)
T ss_pred hHH-HHHH--------HccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhhe
Confidence 111 1111 124578999999988664221 11224578999999988654321 122222 222 22347
Q ss_pred EeecCC
Q 000994 597 LLTGTP 602 (1196)
Q Consensus 597 lLTGTP 602 (1196)
++|||-
T Consensus 206 LmSATl 211 (569)
T KOG0346|consen 206 LMSATL 211 (569)
T ss_pred eehhhh
Confidence 788884
No 231
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=84.78 E-value=8.4 Score=49.58 Aligned_cols=112 Identities=16% Similarity=0.320 Sum_probs=81.2
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
.+......|+..| ..|.+|-|||.-..+.++++++....+.+++.+.|..+..| |+.| .++.|++-+| +-+
T Consensus 267 ~~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W---~~~~VviYT~-~it 337 (824)
T PF02399_consen 267 DETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW---KKYDVVIYTP-VIT 337 (824)
T ss_pred chhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc---cceeEEEEec-eEE
Confidence 3344555666665 45999999998888999999999999999999999888663 3445 4577877664 666
Q ss_pred cccCcc--cCCEEEEe--CCCCCcch--HHHHHHhhhccCCCCcEEEE
Q 000994 1136 LGINLT--AADTVIFY--ESDWNPTL--DLQAMDRAHRLGQTKDVSSW 1177 (1196)
Q Consensus 1136 lGINLT--aAdtVIfy--DsdWNPt~--d~QAmdRahRiGQtK~VtVY 1177 (1196)
+|+++- --|.|+.| ...--|.+ -.|.+||+-.++.. .+.||
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~ 384 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVY 384 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccC-eEEEE
Confidence 777764 35777777 33344555 48999999998854 45555
No 232
>CHL00181 cbbX CbbX; Provisional
Probab=84.77 E-value=2.2 Score=48.99 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=25.4
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhccc-CCcEEEEe
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVA 493 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~-~gp~LIV~ 493 (1196)
+.+|.-.+|.|||..|-++...+...... .++++.|.
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 45888999999999998887766543222 24544444
No 233
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=84.73 E-value=2.1 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
-++.-..|.|||..+.++...+...
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4688999999999999998887654
No 234
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=84.53 E-value=8.2 Score=43.31 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHhhhcCC-CeEEEeCCCCChHHHHHHHHHHHH
Q 000994 438 KEYQLKGLQWLVNCYEQGL-NGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 438 rpyQl~gl~wL~~~~~~~~-ggILADeMGLGKTlqaIall~~l~ 480 (1196)
-+.+..+++.+......+. ..+|.-+.|.|||..+-.++..+.
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3455566666655555544 368899999999988877665543
No 235
>PRK08181 transposase; Validated
Probab=83.94 E-value=4.8 Score=45.83 Aligned_cols=46 Identities=24% Similarity=0.148 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
+-.-|..++.++......+.+.+|.-..|.|||..+.|+...+...
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 4456666664443233467788999999999999999988777654
No 236
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.90 E-value=3.6 Score=51.15 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhcCC--Ce-EEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~--gg-ILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...+..|.+.+..+. .. ++.-..|.|||..+-.+...+.+.
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444555555554432 23 788999999999999988888654
No 237
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.73 E-value=4.6 Score=51.02 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.1
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHh
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~ 482 (1196)
||.-..|+|||..+..+...+.+.
T Consensus 42 LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 42 LFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCC
Confidence 788899999999999999888753
No 238
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=83.58 E-value=5.6 Score=52.48 Aligned_cols=174 Identities=17% Similarity=0.163 Sum_probs=92.4
Q ss_pred CcHHHHHHHHHHHHhh----hcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccC--------------------------
Q 000994 437 LKEYQLKGLQWLVNCY----EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIW-------------------------- 486 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~----~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~-------------------------- 486 (1196)
=+-+|-++++-+..+- ++|.-|+--..+|.|||+.-.-.+..+.......
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 3669999998777643 3555577777899999998777776665433211
Q ss_pred -CcEEEEeCCcc---HHH-HHHHHH-----------HhCCCCc---cccccCChhhHHHHhhccCcccccccCCCceEEE
Q 000994 487 -GPFLVVAPASV---LNN-WADEIS-----------RFCPDLK---TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILI 547 (1196)
Q Consensus 487 -gp~LIV~P~sl---l~n-W~~Ei~-----------k~~p~l~---v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvI 547 (1196)
.-.-|++-.+. |++ +++... .|.++.. ++-|.|+..+.... ..+....-....-...|+|
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~-~~l~~~~k~~rll~apv~V 567 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELL-GRLSLDDKEKTLLAAPVLV 567 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhh-hhhccChhhhhhhcCCeEE
Confidence 01223333332 332 444221 1222222 45566653332211 1111110111122345777
Q ss_pred EehhhHHhcHhhh---------hccCccEEEECCCccccCcccHHHHHHHh---ccccceEEeecCCCCCChHHHH
Q 000994 548 TSYQLLVADEKYF---------RRVKWQYMVLDEAQAIKSSNSIRWKTLLS---FNCRNRLLLTGTPIQNNMAELW 611 (1196)
Q Consensus 548 tSYe~l~~d~~~l---------~~~~w~~VIlDEAH~iKn~~S~~~kal~~---l~~~~RllLTGTPiqN~l~EL~ 611 (1196)
+|-+.+......+ ..+--..|||||+|.+-.........+.. .-....++||||--..-...|.
T Consensus 568 ~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 568 CTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred ecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 7777665543222 23345679999999985444433333332 2457789999998665544443
No 239
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=83.57 E-value=9.4 Score=43.94 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=70.7
Q ss_pred CCchhhccCcHHHHHHHHHHHHhhhcCC-----CeEEEeCCCCChHHHHHHHHHHHHHhccc---CCcEEEE-eC-CccH
Q 000994 429 TPELFKGSLKEYQLKGLQWLVNCYEQGL-----NGILADEMGLGKTIQAMAFLAHLAEEKNI---WGPFLVV-AP-ASVL 498 (1196)
Q Consensus 429 ~P~~l~~~LrpyQl~gl~wL~~~~~~~~-----ggILADeMGLGKTlqaIall~~l~~~~~~---~gp~LIV-~P-~sll 498 (1196)
.|.++. +|.=.+++..|..++.... +-+|.-+.|.|||..+=-|.......... .-|+++| +| ....
T Consensus 33 ~~rWIg---Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 33 ADRWIG---YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred cCCeec---CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 444443 5555667777777665332 45788889999998665555432211111 1255444 34 3334
Q ss_pred HHHHHHHHHhCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccC
Q 000994 499 NNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKS 578 (1196)
Q Consensus 499 ~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn 578 (1196)
......|-.... .+|.... .....-......|..++-.++|+||.|++-.
T Consensus 110 ~~~Y~~IL~~lg----aP~~~~~--------------------------~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 110 RRFYSAILEALG----APYRPRD--------------------------RVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred HHHHHHHHHHhC----cccCCCC--------------------------CHHHHHHHHHHHHHHcCCcEEEeechHHHhc
Confidence 444444432110 0111100 0011112223568888999999999999743
Q ss_pred -cccHHHHH---HHhc--cccceEEeecCC
Q 000994 579 -SNSIRWKT---LLSF--NCRNRLLLTGTP 602 (1196)
Q Consensus 579 -~~S~~~ka---l~~l--~~~~RllLTGTP 602 (1196)
+..+.-.. ++.+ .-+--+++.||+
T Consensus 160 Gs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 160 GSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred ccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 33332222 2222 122335666775
No 240
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=83.54 E-value=3.2 Score=52.72 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhcCC--C-eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGL--N-GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~--g-gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...+..|.+.+..+. . -|+.-+.|.|||..+-.|...+.+.
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4444445555554543 2 4789999999999999999888764
No 241
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.38 E-value=1.3 Score=54.02 Aligned_cols=131 Identities=18% Similarity=0.253 Sum_probs=78.3
Q ss_pred CcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHH-HHHHHHHhc----ccCCcEEEEeC-CccHHHHHHHHHHhC-
Q 000994 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMA-FLAHLAEEK----NIWGPFLVVAP-ASVLNNWADEISRFC- 509 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIa-ll~~l~~~~----~~~gp~LIV~P-~sll~nW~~Ei~k~~- 509 (1196)
..|-|..++-.++ .+..++-+...|.|||+.-+. ++.++.... ...-..+|+.| ..+.+|-..|..++.
T Consensus 159 Pt~iq~~aipvfl----~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~ 234 (593)
T KOG0344|consen 159 PTPIQKQAIPVFL----EKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSI 234 (593)
T ss_pred CCcccchhhhhhh----cccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCC
Confidence 4566777766666 566888999999999875332 333443322 22235789999 567888999999887
Q ss_pred -CC--CccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh----hhccCccEEEECCCccccCc
Q 000994 510 -PD--LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY----FRRVKWQYMVLDEAQAIKSS 579 (1196)
Q Consensus 510 -p~--l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~----l~~~~w~~VIlDEAH~iKn~ 579 (1196)
+. +.+.-+........ .++ ......+++++.|...+...... +.-.....+|+|||..+..+
T Consensus 235 ~~~t~~~a~~~~~~~~~~q------k~a--~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 235 DEGTSLRAAQFSKPAYPSQ------KPA--FLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP 303 (593)
T ss_pred CCCCchhhhhcccccchhh------ccc--hhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh
Confidence 32 22221211100000 000 11224578888888887665332 12224456899999999888
No 242
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=83.36 E-value=25 Score=46.21 Aligned_cols=143 Identities=19% Similarity=0.222 Sum_probs=71.0
Q ss_pred HHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHH-HHHHHHHHhC-CC-CccccccCChhhH
Q 000994 448 LVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN-NWADEISRFC-PD-LKTLPYWGGLQER 524 (1196)
Q Consensus 448 L~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~-nW~~Ei~k~~-p~-l~v~~y~G~~~~r 524 (1196)
+.....++.-.||.-|+|.|||-|.=-++..... ...|.+.+.=|--+-. +=..-+..-. .. ...+-|.- |
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i----R 131 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI----R 131 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE----E
Confidence 4444557778899999999999998766654432 2223444444644321 2222222111 00 11111110 0
Q ss_pred HHHhhccCcccccccCCCceEEEEehhhHHhcHh-hhhccCccEEEECCCccccCcccHHHHHHHhc--------cc-cc
Q 000994 525 MVLRKNINPKRLYRRDAGFHILITSYQLLVADEK-YFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF--------NC-RN 594 (1196)
Q Consensus 525 ~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~-~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l--------~~-~~ 594 (1196)
+.... ...-.+-++|-.++.+... ...--+++.||+||+|. .|..+..++.+ +. =.
T Consensus 132 --fe~~~--------s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHE----RSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 132 --FESKV--------SPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHE----RSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred --eeccC--------CCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhh----hhHHHHHHHHHHHHHHhhcCCCce
Confidence 00000 1122466677777665432 12223689999999995 33333333222 21 23
Q ss_pred eEEeecCCCCCChHHH
Q 000994 595 RLLLTGTPIQNNMAEL 610 (1196)
Q Consensus 595 RllLTGTPiqN~l~EL 610 (1196)
.+++|+|-=...+.++
T Consensus 198 iIimSATld~~rfs~~ 213 (845)
T COG1643 198 LIIMSATLDAERFSAY 213 (845)
T ss_pred EEEEecccCHHHHHHH
Confidence 4788999643334443
No 243
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=82.85 E-value=5.6 Score=35.97 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000994 253 AIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEA 288 (1196)
Q Consensus 253 ~~~~~r~~re~~~~wk~~e~~~~~~~~~~eke~~~~ 288 (1196)
..+|+++++.|+.||...|+++....+|.|++.+.+
T Consensus 35 ~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~ 70 (73)
T smart00573 35 IAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRK 70 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999988876556666655433
No 244
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.79 E-value=5.7 Score=50.36 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=26.5
Q ss_pred HHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 445 LQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 445 l~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
++.|.+.+..+. .-|+.-..|.|||..|.+++..+.+.
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 444444444442 33899999999999998888877654
No 245
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=81.86 E-value=32 Score=43.34 Aligned_cols=159 Identities=24% Similarity=0.240 Sum_probs=87.7
Q ss_pred hHHHHHHHhHHHHHHhHHHHHHHH----HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000994 212 YHKTFFTFHKKQQIDAKRFAETCQ----REVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAE 287 (1196)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~k~~~~~~~r~~re~~~~wk~~e~~~~~~~~~~eke~~~ 287 (1196)
.++....+.+...+-|-|-|..-+ |-.|-.+.|+.|..++.-.=-||--|+|---.||.|||+-|..||+|.|.+.
T Consensus 368 ~q~~rstnakk~s~lC~REarr~~~rs~K~~rt~~~rakr~~Rem~~fwKk~er~~rd~rKK~EkEamer~KrEeEerEs 447 (1185)
T KOG0388|consen 368 YQSARSTNAKKTSILCAREARRWQSRSYKTSRTNPIRAKRIYREMYGFWKKNERNMRDLRKKAEKEAMERAKREEEERES 447 (1185)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhccccCcccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555655443221 2334457777788888876667777888888899999988888877766543
Q ss_pred H--HHHHHHHHHHHHHHHHHH-HhhhhhHHHHHhhhccCCCCCCCCCCCCCCCCCchhhcccCCCCCCCCCCChhHHHHH
Q 000994 288 A--LKREQELREAKRQQQRLN-FLIQQTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELK 364 (1196)
Q Consensus 288 ~--~k~~~e~~e~~rq~rkl~-fli~qtely~hf~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 364 (1196)
+ ++|-+=. --|-.=.. |....+. .+-....+.+...++....+. -.++|+++..+++
T Consensus 448 kRQarklnfL---ltQTELySHFi~rK~d------~n~se~lp~~~ne~sa~e~n~-----------~~d~eea~l~~~~ 507 (1185)
T KOG0388|consen 448 KRQARKLNFL---LTQTELYSHFIGRKND------CNLSEALPAERNEISAGEPNG-----------MKDYEEAMLQKLR 507 (1185)
T ss_pred HHHHHHhhHH---HHHHHHHHHHHhhccc------CCccccCCcccccccccCccc-----------CCChHHHHHHHHH
Confidence 2 2222211 11222222 2222221 111111111111111111110 1345667777888
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhH
Q 000994 365 KEALKAAQNAVSKQKMLTNTFDTECS 390 (1196)
Q Consensus 365 ~~a~~~a~~a~~~~~~~~~~fd~~~~ 390 (1196)
.+|+++|-.|.+..+.....|+....
T Consensus 508 lraAq~Av~a~~~t~afd~e~~~~~n 533 (1185)
T KOG0388|consen 508 LRAAQDAVSAKQITDAFDTEFGAERN 533 (1185)
T ss_pred HHHHHHHHhHHHhhhhhhhhhhhccc
Confidence 88888888899888888888877643
No 246
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=81.81 E-value=8 Score=51.72 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=47.1
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHH-H-HHHH
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN-N-WADE 504 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~-n-W~~E 504 (1196)
..||-|.+..+.+...+..+...++=..+|+|||+--+.-+...+... .+|++|-++...|. | +..+
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~--~~~vvIsT~T~~LQ~Ql~~kD 325 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK--EEPVVISTYTIQLQQQLLEKD 325 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc--CCeEEEEcCCHHHHHHHHHhh
Confidence 679999999999998888887777777999999997644333333222 25777777765554 3 4444
No 247
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=81.76 E-value=3.7 Score=52.61 Aligned_cols=77 Identities=25% Similarity=0.250 Sum_probs=58.3
Q ss_pred ccCcHHHHHHHHHHHHhhhcCC-CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHHHHHHhCCCC
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGL-NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISRFCPDL 512 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~-ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~Ei~k~~p~l 512 (1196)
..|.++|..++.-+.+....+. ..++.--.|.|||+.+.+++..+ ..|+|||+|... ..+|.+++..|+|+.
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~~------~r~vLIVt~~~~~A~~l~~dL~~~~~~~ 84 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIARL------QRPTLVLAHNKTLAAQLYSEFKEFFPEN 84 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHhcCCC
Confidence 4678899999988887776553 45677778999999876655332 259999999754 678999999998875
Q ss_pred ccccc
Q 000994 513 KTLPY 517 (1196)
Q Consensus 513 ~v~~y 517 (1196)
.|..|
T Consensus 85 ~v~~f 89 (652)
T PRK05298 85 AVEYF 89 (652)
T ss_pred eEEEe
Confidence 55444
No 248
>PRK07952 DNA replication protein DnaC; Validated
Probab=81.62 E-value=12 Score=42.05 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhh---hcC-CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHH
Q 000994 440 YQLKGLQWLVNCY---EQG-LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1196)
Q Consensus 440 yQl~gl~wL~~~~---~~~-~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k 507 (1196)
.|..++..+.... ..+ .+-+|.-..|.|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 80 ~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 80 GQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLII----TVADIMSAMKD 144 (244)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEE----EHHHHHHHHHH
Confidence 4555555444322 222 3458899999999999999998887642 355555 35667766653
No 249
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=81.59 E-value=3.9 Score=47.89 Aligned_cols=48 Identities=23% Similarity=0.137 Sum_probs=35.9
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
.++|+|....+-++..-.-...-++.-..|+|||..|.++...+....
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 358899888887776422222236788999999999999999988653
No 250
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=81.50 E-value=12 Score=43.81 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=40.7
Q ss_pred ccCcHHHHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
..++|+|....+-+...+.++. .-++.-..|+||+..+.+|+..+.+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 4689999999998888876654 347888999999999999999988753
No 251
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.48 E-value=9.4 Score=45.03 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHh-hhc--CCCeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 438 KEYQLKGLQWLVNC-YEQ--GLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 438 rpyQl~gl~wL~~~-~~~--~~ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|+.|++.+.-.+.. ... +.+.++.-+.|.|||..+-+++..+...
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 78888877544433 222 2457888999999999998888877543
No 252
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=81.30 E-value=11 Score=48.83 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=28.6
Q ss_pred CCceEEEEehhhHHhcHhh-----hhccCccEEEECCCccccC
Q 000994 541 AGFHILITSYQLLVADEKY-----FRRVKWQYMVLDEAQAIKS 578 (1196)
Q Consensus 541 ~~~~VvItSYe~l~~d~~~-----l~~~~w~~VIlDEAH~iKn 578 (1196)
...|||||++..+..|... |-.....++|+||||++-.
T Consensus 218 ~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 218 DEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 3458999999999887642 2223578899999999953
No 253
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.27 E-value=5.3 Score=49.60 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhcCCC--e-EEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGLN--G-ILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~g--g-ILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...+..|.+....+.- . ++.-..|.|||..+.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 44455555555545433 2 889999999999999998888654
No 254
>PF13245 AAA_19: Part of AAA domain
Probab=81.25 E-value=4 Score=37.17 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=32.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHh--cccCCcEEEEeCCccHHH
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEE--KNIWGPFLVVAPASVLNN 500 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~--~~~~gp~LIV~P~sll~n 500 (1196)
.++--.+|.|||.+++..+.++... .+ ..++||++|....-+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAAD 56 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHH
Confidence 4557889999999999999888743 23 468999999765443
No 255
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=81.21 E-value=6.1 Score=44.20 Aligned_cols=47 Identities=28% Similarity=0.331 Sum_probs=30.8
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccH------HHHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL------NNWADEISR 507 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll------~nW~~Ei~k 507 (1196)
-+.+.-+.|.|||+.+=+++..+.+. .-..|+.|+.++ .-|..++.-
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 45677899999999988666666532 233467776553 336666543
No 256
>PRK14974 cell division protein FtsY; Provisional
Probab=81.02 E-value=17 Score=42.83 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=29.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC----ccHHHHHHHHHH
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA----SVLNNWADEISR 507 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~----sll~nW~~Ei~k 507 (1196)
.++.-..|.|||-++..++..+... + ..++++..- ....||......
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~-g--~~V~li~~Dt~R~~a~eqL~~~a~~ 193 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKN-G--FSVVIAAGDTFRAGAIEQLEEHAER 193 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc-C--CeEEEecCCcCcHHHHHHHHHHHHH
Confidence 4667799999999887777766543 2 355666543 334566554443
No 257
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=80.79 E-value=12 Score=44.66 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=58.6
Q ss_pred HHHHHHHH-hhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccccccCCh
Q 000994 443 KGLQWLVN-CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGL 521 (1196)
Q Consensus 443 ~gl~wL~~-~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~ 521 (1196)
.++..++. -+..|.-.+|.-++|.|||..++.++..+.... +++|.|.-.-...+......++.-..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~EEs~~qi~~Ra~rlg~~~--------- 136 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGEESPEQIKLRADRLGIST--------- 136 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECCcCHHHHHHHHHHcCCCc---------
Confidence 34445542 112233358889999999999998887776532 57888876544555444333321000
Q ss_pred hhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCcccc
Q 000994 522 QERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIK 577 (1196)
Q Consensus 522 ~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iK 577 (1196)
. .+.+.....+..-...+...+.++||||+.|.+.
T Consensus 137 -------------------~--~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 137 -------------------E--NLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred -------------------c--cEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 0 1122222222222334456688999999999874
No 258
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=80.79 E-value=6.1 Score=48.93 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=49.3
Q ss_pred cCcHHHHHHHHHHHHhhh--------cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHH
Q 000994 436 SLKEYQLKGLQWLVNCYE--------QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~--------~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k 507 (1196)
..++...+.+.|.+...+ ...|.+|+-..|.|||+.+-++...+. .+|+-|-...++..|.-|..+
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC------CeEEEeeCHHHhccccchHHH
Confidence 456777777777765443 333679999999999999887775332 467766666999999999877
Q ss_pred h
Q 000994 508 F 508 (1196)
Q Consensus 508 ~ 508 (1196)
-
T Consensus 323 ~ 323 (494)
T COG0464 323 N 323 (494)
T ss_pred H
Confidence 3
No 259
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.31 E-value=5 Score=51.01 Aligned_cols=42 Identities=21% Similarity=0.047 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...+..|...+..+. .-|+.-+.|+|||..+.+++..+.+.
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 4455555555555553 33889999999999999999888764
No 260
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=79.82 E-value=23 Score=37.02 Aligned_cols=45 Identities=24% Similarity=0.263 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhcCC--Ce-EEEeCCCCChHHHHHHHHHHHHHhccc
Q 000994 441 QLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEKNI 485 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~--gg-ILADeMGLGKTlqaIall~~l~~~~~~ 485 (1196)
|.+.+..|.+.+.++. .+ |+.-+.|.||+-.+.+++..+......
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 5666777777776653 33 778889999999999999998876543
No 261
>PRK08116 hypothetical protein; Validated
Probab=79.73 E-value=11 Score=42.74 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=27.5
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEe
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~ 493 (1196)
+.+.+|.-+.|.|||..+.|++..+... + .+++++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~-~--~~v~~~~ 149 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK-G--VPVIFVN 149 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc-C--CeEEEEE
Confidence 3456899999999999999998888764 2 3555554
No 262
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.70 E-value=13 Score=48.25 Aligned_cols=96 Identities=14% Similarity=0.175 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhh-CCCeEEEEecchHHHHHHHHHHHhCCC-------cEEEEeCCCCHHHHHHHHHHHccC--CCceEEE
Q 000994 1059 QTLDILLKRLRA-ENHRVLLFAQMTKMLNILEDYMNYRKY-------RYLRLDGSSTIMDRRDMVRDFQHR--SDIFVFL 1128 (1196)
Q Consensus 1059 ~~Ld~LL~~Lk~-~ghKVLIFSQ~t~mlDlLee~L~~rg~-------~y~rLDGStk~~dR~~~V~dFq~~--~di~VfL 1128 (1196)
..|...|.++.. -...||||+..-..|+.+.+.+...|+ +-+.+-+... .++..++++|... .+--.+|
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~gavL 586 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGRGAVL 586 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCCceEE
Confidence 445555555543 467899999988888877777764332 3345555433 5889999999752 1222345
Q ss_pred Eec--CccccccCccc--CCEEEEeCCCC-Cc
Q 000994 1129 LST--RAGGLGINLTA--ADTVIFYESDW-NP 1155 (1196)
Q Consensus 1129 LST--rAGGlGINLTa--AdtVIfyDsdW-NP 1155 (1196)
+++ ..-++|||+.. +..||++-.+. ||
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCCCCC
Confidence 565 46789999985 78899987665 44
No 263
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.35 E-value=5 Score=50.09 Aligned_cols=43 Identities=28% Similarity=0.254 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhhcCC--Ce-EEEeCCCCChHHHHHHHHHHHHHh
Q 000994 440 YQLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~~~--gg-ILADeMGLGKTlqaIall~~l~~~ 482 (1196)
.|...++.+.+....+. .+ |+.-..|.|||..+-.++..+...
T Consensus 20 Gq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 20 GQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34444445554444432 23 789999999999998888877653
No 264
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=79.12 E-value=19 Score=45.74 Aligned_cols=43 Identities=30% Similarity=0.275 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 440 YQLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
.|...++.|.+.+..+. .-||.-..|+|||..+..+...+.+.
T Consensus 28 Gq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 28 GQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 35555555666555553 34788899999999999999888764
No 265
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=78.99 E-value=14 Score=42.80 Aligned_cols=40 Identities=8% Similarity=0.130 Sum_probs=24.3
Q ss_pred CccEEEECCCccccCcc--cHHHHHHHhccccceEEeecCCC
Q 000994 564 KWQYMVLDEAQAIKSSN--SIRWKTLLSFNCRNRLLLTGTPI 603 (1196)
Q Consensus 564 ~w~~VIlDEAH~iKn~~--S~~~kal~~l~~~~RllLTGTPi 603 (1196)
...+||+||+|.+.... ......+.......++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 35789999999983322 11222233345666788888654
No 266
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=78.57 E-value=17 Score=43.53 Aligned_cols=123 Identities=15% Similarity=0.235 Sum_probs=65.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC----ccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCc
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA----SVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINP 533 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~----sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~ 533 (1196)
..|.-..|.|||..+..+...+...+ ..+++|.-- ..+.||..-...
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~~G---kkVglI~aDt~RiaAvEQLk~yae~-------------------------- 294 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQDYVKT-------------------------- 294 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC---CcEEEEecCCcchHHHHHHHHHhhh--------------------------
Confidence 35666799999999888877765332 355666542 234455432111
Q ss_pred ccccccCCCceEE-EEehhhHHhcHhhhhc-cCccEEEECCCccccCcccHHHHHHHhc----ccc-ceEEeecCCCCCC
Q 000994 534 KRLYRRDAGFHIL-ITSYQLLVADEKYFRR-VKWQYMVLDEAQAIKSSNSIRWKTLLSF----NCR-NRLLLTGTPIQNN 606 (1196)
Q Consensus 534 ~~~~~~~~~~~Vv-ItSYe~l~~d~~~l~~-~~w~~VIlDEAH~iKn~~S~~~kal~~l----~~~-~RllLTGTPiqN~ 606 (1196)
.++.++ ..+...+......+.. .++++||+|-+=+.-+.. .....+..+ ... .-|.|++|--.+.
T Consensus 295 -------lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~-~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 295 -------IGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRAS-ETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred -------cCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCH-HHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 112222 2233444444444443 368999999887654332 222222222 222 2355777766666
Q ss_pred hHHHHHHHHhh
Q 000994 607 MAELWALLHFI 617 (1196)
Q Consensus 607 l~EL~sLL~FL 617 (1196)
+.+....++.+
T Consensus 367 ~~~i~~~F~~~ 377 (436)
T PRK11889 367 MIEIITNFKDI 377 (436)
T ss_pred HHHHHHHhcCC
Confidence 66666555544
No 267
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=78.34 E-value=44 Score=38.33 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhcC--CCeEEEeCCCCChHHHHHHHHHHHH
Q 000994 442 LKGLQWLVNCYEQG--LNGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 442 l~gl~wL~~~~~~~--~ggILADeMGLGKTlqaIall~~l~ 480 (1196)
.+.+..+......+ .+.+|.-+.|.|||..+-+++..+.
T Consensus 23 ~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 23 EEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 33444444443333 2469999999999998888776664
No 268
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=78.27 E-value=6.1 Score=49.01 Aligned_cols=43 Identities=19% Similarity=0.031 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 440 YQLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
-|...+..|.+.+..+. ..||.-+.|.|||..+-.+...+.+.
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 34445555555444443 56899999999999999998887654
No 269
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=78.19 E-value=6 Score=50.75 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=52.3
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccH-HHHHHH
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL-NNWADE 504 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll-~nW~~E 504 (1196)
...|+.|.+.+.-+......+..+++=..+|+|||+..++.........+ .+++|.++...+ .|-..+
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~--~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG--KKVIISTRTKALQEQLLEE 82 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC--CcEEEECCCHHHHHHHHHh
Confidence 47899999999999988888888999999999999999887777665443 466666665533 333334
No 270
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.10 E-value=5.7 Score=49.67 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhcCCC---eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGLN---GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~g---gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...++.|.+.+..+.. -|+.-+.|.|||..+-.++..+.+.
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 33444445555545432 4789999999999999998887653
No 271
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=78.05 E-value=19 Score=45.06 Aligned_cols=39 Identities=23% Similarity=0.155 Sum_probs=27.0
Q ss_pred HHHHHHHhhhcCCC--e-EEEeCCCCChHHHHHHHHHHHHHh
Q 000994 444 GLQWLVNCYEQGLN--G-ILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 444 gl~wL~~~~~~~~g--g-ILADeMGLGKTlqaIall~~l~~~ 482 (1196)
.+..|......+.- . ++.-+.|.|||-.+-+++..+...
T Consensus 22 v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 22 VSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred HHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 33444444444432 2 789999999999999998887654
No 272
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=78.04 E-value=13 Score=48.56 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=43.0
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHH
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN 499 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~ 499 (1196)
..|-+-|.+++.-+.. .+.-.+|-.-.|.|||..+-+++..+... + ..+++++|.....
T Consensus 351 ~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~~-g--~~V~~~ApTg~Aa 409 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEAA-G--YRVIGAALSGKAA 409 (744)
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHhC-C--CeEEEEeCcHHHH
Confidence 4688999999987763 23356888999999998877766555432 2 4788888987643
No 273
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=77.95 E-value=11 Score=44.16 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHHHHhhhcCC--Ce-EEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 437 LKEYQLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~~~~--gg-ILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
++|+|...-+-+.+.+.++. .+ ++.-..|+||+..|.++...+.+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888888888888777654 24 5788999999999999999988754
No 274
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=77.76 E-value=17 Score=44.12 Aligned_cols=55 Identities=11% Similarity=0.156 Sum_probs=35.8
Q ss_pred CccEEEECCCccccCcccHHHHHHHhc------cccceEEeecCCCCCChHHHHHHHHhhCC
Q 000994 564 KWQYMVLDEAQAIKSSNSIRWKTLLSF------NCRNRLLLTGTPIQNNMAELWALLHFIMP 619 (1196)
Q Consensus 564 ~w~~VIlDEAH~iKn~~S~~~kal~~l------~~~~RllLTGTPiqN~l~EL~sLL~FL~P 619 (1196)
.+++||||.+-+.... ......+..+ .....++|++|+=.+.+.+++..++.+.+
T Consensus 299 ~~DlVlIDt~G~~~~d-~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRD-KRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCC-HHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 5799999998764332 2222222222 23457899999888888888877776654
No 275
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.05 E-value=5.6 Score=48.95 Aligned_cols=24 Identities=33% Similarity=0.260 Sum_probs=20.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHH
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~ 481 (1196)
-||.-+.|.|||..|-+++..+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 489999999999999888877654
No 276
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=76.57 E-value=8 Score=49.09 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=76.3
Q ss_pred HHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHH---hcccCCcEEEEeCCcc--HH---HHHHHHHHhCCCCcccc-cc
Q 000994 448 LVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAE---EKNIWGPFLVVAPASV--LN---NWADEISRFCPDLKTLP-YW 518 (1196)
Q Consensus 448 L~~~~~~~~ggILADeMGLGKTlqaIall~~l~~---~~~~~gp~LIV~P~sl--l~---nW~~Ei~k~~p~l~v~~-y~ 518 (1196)
++...+.+.-.|+|-|+|.|||-|.=-||...-- .....|-+=|.=|.-+ +. -=..|+..+.......+ |.
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd 343 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFD 343 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEec
Confidence 3445556777899999999999999887754321 1111122333335433 11 13334444322222222 22
Q ss_pred CChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh-hhhccCccEEEECCCccccCcccHH-HHHHHhc------
Q 000994 519 GGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK-YFRRVKWQYMVLDEAQAIKSSNSIR-WKTLLSF------ 590 (1196)
Q Consensus 519 G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~-~l~~~~w~~VIlDEAH~iKn~~S~~-~kal~~l------ 590 (1196)
|+.. ..-.|-++|-..+.+... .|.--++..|||||||.= +-++-. .-+|.++
T Consensus 344 ~ti~------------------e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER-SvnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 344 GTIG------------------EDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER-SVNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred cccC------------------CCceeEEecchHHHHHHHHhHhhhhceeEEechhhhc-cchHHHHHHHHHHHHHHHHH
Confidence 3211 223477788888777543 344557899999999952 222211 1111111
Q ss_pred --------cccceEEeecCCCCCChHH
Q 000994 591 --------NCRNRLLLTGTPIQNNMAE 609 (1196)
Q Consensus 591 --------~~~~RllLTGTPiqN~l~E 609 (1196)
+.-..++||||-=-.++.|
T Consensus 405 ~~ke~~~~kpLKLIIMSATLRVsDFte 431 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLRVSDFTE 431 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEEeccccc
Confidence 1234489999975554444
No 277
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=76.56 E-value=8.3 Score=48.21 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=77.8
Q ss_pred eEEEEecchHHHHHHHHHH----HhCCCc----EEEEeCCCCHHHHHHHHHHHccCC-CceEEEEecCccccccCcccCC
Q 000994 1074 RVLLFAQMTKMLNILEDYM----NYRKYR----YLRLDGSSTIMDRRDMVRDFQHRS-DIFVFLLSTRAGGLGINLTAAD 1144 (1196)
Q Consensus 1074 KVLIFSQ~t~mlDlLee~L----~~rg~~----y~rLDGStk~~dR~~~V~dFq~~~-di~VfLLSTrAGGlGINLTaAd 1144 (1196)
-+|||=.=..-++.+.+.| ...+-. ++-+.|+.+.++... -|..-| +++=+++||..+-..|....--
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~r---vF~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSR---VFDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhc---cccCCCCCcceEEEEcceeeeeEEecceE
Confidence 5788865554444444444 333322 467899998665544 476644 7777899999988888877765
Q ss_pred EEEEeCCC------CCc-----------chHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHh
Q 000994 1145 TVIFYESD------WNP-----------TLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIG 1190 (1196)
Q Consensus 1145 tVIfyDsd------WNP-----------t~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl 1190 (1196)
.|| ||- ||| -.-+||+-|++|-|.|.+..+|||.++.-. +.|.
T Consensus 337 YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~-~~~~ 396 (674)
T KOG0922|consen 337 YVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY-DKMP 396 (674)
T ss_pred EEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH-hhcc
Confidence 554 553 465 355799999999999999999999999877 4443
No 278
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=76.52 E-value=14 Score=47.34 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...+..|.+.+..+. .-||.-..|+|||..+.++...+.+.
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3344444444444443 34889999999999999988877654
No 279
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.18 E-value=6.5 Score=49.82 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhcCCC--e-EEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGLN--G-ILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~g--g-ILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...+..|.+.+.++.- . |+.-..|.|||..+..+...+.+.
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 55666666666655532 3 788999999999999998888754
No 280
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=76.17 E-value=8.8 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
-||.-..|+|||..+..|...+.+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 3789999999999999999888764
No 281
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=75.93 E-value=4.6 Score=48.54 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=37.1
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHh
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~ 508 (1196)
+-+|+-..|.|||..+.|++.... -.+.=|.|.+|..-|.-|.++.
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~------atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESG------ATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhc------ceEeeccHHHhhhhccChHHHH
Confidence 458999999999999888775443 3677888999999998887664
No 282
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=75.93 E-value=6.5 Score=46.31 Aligned_cols=61 Identities=25% Similarity=0.476 Sum_probs=41.0
Q ss_pred ccCCchhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHH
Q 000994 427 VQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1196)
Q Consensus 427 v~~P~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~ 506 (1196)
+..|..|++.++|+ .|.+|+-.+|.|||+.|=|+.... + -+|.=|....+...|.-|=+
T Consensus 232 i~mPe~F~GirrPW---------------kgvLm~GPPGTGKTlLAKAvATEc----~--tTFFNVSsstltSKwRGeSE 290 (491)
T KOG0738|consen 232 IWMPEFFKGIRRPW---------------KGVLMVGPPGTGKTLLAKAVATEC----G--TTFFNVSSSTLTSKWRGESE 290 (491)
T ss_pred hhhHHHHhhccccc---------------ceeeeeCCCCCcHHHHHHHHHHhh----c--CeEEEechhhhhhhhccchH
Confidence 34566666666654 367899999999999887765332 1 24555555666778998876
Q ss_pred Hh
Q 000994 507 RF 508 (1196)
Q Consensus 507 k~ 508 (1196)
|.
T Consensus 291 Kl 292 (491)
T KOG0738|consen 291 KL 292 (491)
T ss_pred HH
Confidence 64
No 283
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.82 E-value=7.8 Score=48.90 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhcCC--Ce-EEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~--gg-ILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...+..|.+....+. .+ |+.-..|+|||..+.+++..+.+.
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 5555555655555543 23 789999999999999999888764
No 284
>PRK06893 DNA replication initiation factor; Validated
Probab=75.27 E-value=27 Score=38.64 Aligned_cols=25 Identities=16% Similarity=-0.032 Sum_probs=20.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
-+|.-..|+|||.-+.|+...+...
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3788999999999888887776543
No 285
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=75.06 E-value=7.7 Score=51.48 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=82.4
Q ss_pred hcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-----HHHHHHHHHHhCCCCccccccCChhhHHHH
Q 000994 453 EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-----LNNWADEISRFCPDLKTLPYWGGLQERMVL 527 (1196)
Q Consensus 453 ~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-----l~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l 527 (1196)
+.+.+.+++...|.|||+.|=-.+ +. ....+...-|+|... .+-|..-|.+- .++.++...|...--..+
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~--l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lkl 1231 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELAL--LR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLKL 1231 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHh--cC--CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchHH
Confidence 456679999999999998763222 22 222367888999764 34588888876 566777676643222111
Q ss_pred hhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccH-------HHHHHHhccccceEEeec
Q 000994 528 RKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSI-------RWKTLLSFNCRNRLLLTG 600 (1196)
Q Consensus 528 ~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~-------~~kal~~l~~~~RllLTG 600 (1196)
...-+|+|.|.+.+.... .. ..-++.|+||.|.|.....+ .-....++....|++--.
T Consensus 1232 ------------~~~~~vii~tpe~~d~lq-~i--Q~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls 1296 (1674)
T KOG0951|consen 1232 ------------LQKGQVIISTPEQWDLLQ-SI--QQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALS 1296 (1674)
T ss_pred ------------hhhcceEEechhHHHHHh-hh--hhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEee
Confidence 134579999988875542 22 24578999999999764321 333344555555554444
Q ss_pred CCCC
Q 000994 601 TPIQ 604 (1196)
Q Consensus 601 TPiq 604 (1196)
|-+.
T Consensus 1297 ~~la 1300 (1674)
T KOG0951|consen 1297 SSLA 1300 (1674)
T ss_pred hhhc
Confidence 4443
No 286
>PRK08727 hypothetical protein; Validated
Probab=74.26 E-value=14 Score=40.98 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=20.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
-+|.-..|+|||--+.|+...+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 6889999999999888887776543
No 287
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=73.84 E-value=22 Score=41.71 Aligned_cols=42 Identities=29% Similarity=0.236 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...++-+......+. .-+|.-+.|.|||-.+-++...+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3334444444443443 23789999999999998888887643
No 288
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=73.81 E-value=13 Score=43.61 Aligned_cols=132 Identities=15% Similarity=0.079 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhhhcCC--Ce-EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccc
Q 000994 439 EYQLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTL 515 (1196)
Q Consensus 439 pyQl~gl~wL~~~~~~~~--gg-ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~ 515 (1196)
-.|...+..+.+...++. .+ ++.-+.|.|||..+.+++..+....+..+. |-........-.....|++.++
T Consensus 9 ~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 9 ALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred hhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEEEe
Confidence 346666666666665543 34 889999999999999998888764322111 2222222222223334555554
Q ss_pred cccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhh----ccCccEEEECCCccccCccc-HHHHHHHhc
Q 000994 516 PYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFR----RVKWQYMVLDEAQAIKSSNS-IRWKTLLSF 590 (1196)
Q Consensus 516 ~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~----~~~w~~VIlDEAH~iKn~~S-~~~kal~~l 590 (1196)
...|.. .+.+.++.....+. .-.+.++|+||+|++..... .+.+.+-.-
T Consensus 84 ~~~~~~--------------------------i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP 137 (329)
T PRK08058 84 APDGQS--------------------------IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP 137 (329)
T ss_pred cccccc--------------------------CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC
Confidence 443321 11122222222221 12678999999999844221 222333333
Q ss_pred cccceEEeecC
Q 000994 591 NCRNRLLLTGT 601 (1196)
Q Consensus 591 ~~~~RllLTGT 601 (1196)
+..-.++|+.+
T Consensus 138 p~~~~~Il~t~ 148 (329)
T PRK08058 138 SGGTTAILLTE 148 (329)
T ss_pred CCCceEEEEeC
Confidence 45555666655
No 289
>PRK06835 DNA replication protein DnaC; Validated
Probab=73.78 E-value=27 Score=40.99 Aligned_cols=47 Identities=21% Similarity=0.147 Sum_probs=32.9
Q ss_pred cCcHHHHHHHHHHH----HhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 436 SLKEYQLKGLQWLV----NCYEQGLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~----~~~~~~~ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
..+.++..++.++. +....+.+-+|.-.+|+|||..+.|++..+...
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45666666665433 322345567888899999999999988887754
No 290
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=73.29 E-value=11 Score=47.31 Aligned_cols=133 Identities=20% Similarity=0.203 Sum_probs=68.1
Q ss_pred HHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccH----HH-HHHHHHHhCCCCccccccCChh
Q 000994 448 LVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL----NN-WADEISRFCPDLKTLPYWGGLQ 522 (1196)
Q Consensus 448 L~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll----~n-W~~Ei~k~~p~l~v~~y~G~~~ 522 (1196)
++...+.+.-.|+.-|+|.|||-|.=-++..---. ..|.+-+.=|.-+. .. =..|..--.+ .-+-|.=
T Consensus 59 il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~--~~g~I~~TQPRRVAavslA~RVAeE~~~~lG--~~VGY~I--- 131 (674)
T KOG0922|consen 59 ILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA--SSGKIACTQPRRVAAVSLAKRVAEEMGCQLG--EEVGYTI--- 131 (674)
T ss_pred HHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc--cCCcEEeecCchHHHHHHHHHHHHHhCCCcC--ceeeeEE---
Confidence 45555677788999999999999987666432211 12443444464332 21 2222211110 0011100
Q ss_pred hHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh-hhccCccEEEECCCccccCcccHHHHHHHhc-------ccc-
Q 000994 523 ERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY-FRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF-------NCR- 593 (1196)
Q Consensus 523 ~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~-l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l-------~~~- 593 (1196)
| +.+ .....-.|...|-..+.+..-. -.--++.+|||||||. .|..+..|..+ +..
T Consensus 132 -R-----Fed-----~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHE----Rsl~TDiLlGlLKki~~~R~~L 196 (674)
T KOG0922|consen 132 -R-----FED-----STSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHE----RSLHTDILLGLLKKILKKRPDL 196 (674)
T ss_pred -E-----ecc-----cCCCceeEEEecchHHHHHHhcCCccccccEEEEechhh----hhhHHHHHHHHHHHHHhcCCCc
Confidence 0 000 0011234666777777664321 0113689999999994 44444444433 333
Q ss_pred ceEEeecCC
Q 000994 594 NRLLLTGTP 602 (1196)
Q Consensus 594 ~RllLTGTP 602 (1196)
..+++|||-
T Consensus 197 klIimSATl 205 (674)
T KOG0922|consen 197 KLIIMSATL 205 (674)
T ss_pred eEEEEeeee
Confidence 447788885
No 291
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=72.98 E-value=12 Score=42.97 Aligned_cols=42 Identities=29% Similarity=0.154 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhc--CCCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 440 YQLKGLQWLVNCYEQ--GLNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~--~~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
+|...|+-|.+.... ..+-++--..|+|||-++.+|...+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 788888877765543 223477778999999999999988865
No 292
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.67 E-value=12 Score=46.24 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 442 LKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 442 l~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
...++.|.+.+..+. .-|+.-..|+|||-.|..+...+.+..
T Consensus 19 e~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 19 DVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 334444444444432 458899999999999988887776543
No 293
>PRK05642 DNA replication initiation factor; Validated
Probab=72.66 E-value=33 Score=38.09 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=18.2
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~ 480 (1196)
+-+|.-+.|+|||--+-|+...+.
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~ 70 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFE 70 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 357889999999988766655544
No 294
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=72.65 E-value=21 Score=43.80 Aligned_cols=47 Identities=15% Similarity=-0.008 Sum_probs=28.9
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
+.+|.-+.|+|||..+-|+...+....+. ..++.|.+...+......
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~-~~v~yv~~~~f~~~~~~~ 189 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSD-LKVSYMSGDEFARKAVDI 189 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEEHHHHHHHHHHH
Confidence 35789999999998887777766543322 344555444444333333
No 295
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.31 E-value=10 Score=48.02 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhhcCCCe---EEEeCCCCChHHHHHHHHHHHHH
Q 000994 440 YQLKGLQWLVNCYEQGLNG---ILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~~~gg---ILADeMGLGKTlqaIall~~l~~ 481 (1196)
.|...+..|.+.+..+.-+ |+.-+.|+|||..+..++..+..
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3556666666666555433 78999999999999999888764
No 296
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=71.95 E-value=1.5 Score=57.66 Aligned_cols=133 Identities=24% Similarity=0.284 Sum_probs=119.6
Q ss_pred cccHHHHHHHHHHHHhhC--CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1054 DSGKLQTLDILLKRLRAE--NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk~~--ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
-+.|+.....++..++-. -.+||+||||+..+|.++..+..+++++.+ +|++. +-.+.+..|.. |.||||-+
T Consensus 1201 fg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~-~~~t~--d~~dc~~~fk~---I~clll~~ 1274 (1394)
T KOG0298|consen 1201 FGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQL-DGETE--DFDDCIICFKS---IDCLLLFV 1274 (1394)
T ss_pred hccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhh-ccCCc--chhhhhhhccc---ceEEEEEe
Confidence 377888887777777655 469999999999999999999999999665 55554 77888999964 99999999
Q ss_pred CccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhcc
Q 000994 1132 RAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNG 1192 (1196)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~ 1192 (1196)
+.||-|+||+.|.|||+.+|--||.+++|||||+||+||+++|.|||+|..+||||.|+.-
T Consensus 1275 ~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l 1335 (1394)
T KOG0298|consen 1275 SKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSL 1335 (1394)
T ss_pred ccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999853
No 297
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=71.62 E-value=12 Score=47.26 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=21.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
-|+.-+.|+|||..+-.+...+.+..
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~~ 66 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCLN 66 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 36799999999999998887776543
No 298
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=71.59 E-value=18 Score=47.96 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=26.3
Q ss_pred HHHHHHhh--hcCCCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 445 LQWLVNCY--EQGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 445 l~wL~~~~--~~~~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
++.|+... ....+.||.-++|.|||..+=+++..+..
T Consensus 196 i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 196 IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 55665532 23447899999999999988777766543
No 299
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.46 E-value=11 Score=46.71 Aligned_cols=42 Identities=26% Similarity=0.129 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhcCC--Ce-EEEeCCCCChHHHHHHHHHHHHH
Q 000994 440 YQLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~~~--gg-ILADeMGLGKTlqaIall~~l~~ 481 (1196)
-|...+..|.+....+. ++ ++.-+.|.|||..+-.+...+.+
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45555555665555543 33 67999999999998888877754
No 300
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=71.36 E-value=19 Score=44.07 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=29.3
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
..+|.-..|+|||..+-++...+....+ ...++.+.....+..+...
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~ 196 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNA 196 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHH
Confidence 3578999999999999888887765432 1234444333333333333
No 301
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=70.73 E-value=18 Score=47.47 Aligned_cols=146 Identities=17% Similarity=0.140 Sum_probs=77.6
Q ss_pred hhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC----ccHHHHHHHHHHhCCCCccccccCChhhHHH
Q 000994 451 CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA----SVLNNWADEISRFCPDLKTLPYWGGLQERMV 526 (1196)
Q Consensus 451 ~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~----sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~ 526 (1196)
.++++.-.++.-|+|.|||.|+--++....-..+..-++++-=|. .-+.+|...=. ..+-...+-|.-....
T Consensus 184 ~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER-~~~~g~~VGYqvrl~~--- 259 (924)
T KOG0920|consen 184 AIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKER-GESLGEEVGYQVRLES--- 259 (924)
T ss_pred HHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHh-ccccCCeeeEEEeeec---
Confidence 344677789999999999999999987765444422232222253 22555554322 1111233333110000
Q ss_pred HhhccCcccccccCCCceEEEEehhhHHhcHhh-hhccCccEEEECCCccccCcccHHHHH-HHhc---cc-cceEEeec
Q 000994 527 LRKNINPKRLYRRDAGFHILITSYQLLVADEKY-FRRVKWQYMVLDEAQAIKSSNSIRWKT-LLSF---NC-RNRLLLTG 600 (1196)
Q Consensus 527 l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~-l~~~~w~~VIlDEAH~iKn~~S~~~ka-l~~l---~~-~~RllLTG 600 (1196)
+ ....-.+..+|+..+.+.... -.--....||+||+|. ++-.+-..-. ++.+ +. =..+|+||
T Consensus 260 -------~----~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHE-R~i~~DflLi~lk~lL~~~p~LkvILMSA 327 (924)
T KOG0920|consen 260 -------K----RSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHE-RSINTDFLLILLKDLLPRNPDLKVILMSA 327 (924)
T ss_pred -------c----cCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEE-ccCCcccHHHHHHHHhhhCCCceEEEeee
Confidence 0 011234778888887664321 1112467899999995 3444433222 2222 32 35589999
Q ss_pred CCCCCChHHHHH
Q 000994 601 TPIQNNMAELWA 612 (1196)
Q Consensus 601 TPiqN~l~EL~s 612 (1196)
|--...+.+++.
T Consensus 328 T~dae~fs~YF~ 339 (924)
T KOG0920|consen 328 TLDAELFSDYFG 339 (924)
T ss_pred ecchHHHHHHhC
Confidence 975444444444
No 302
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=70.46 E-value=16 Score=42.90 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=39.6
Q ss_pred cCcHHHHHHHHHHHHhhhcCCC--e-EEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLN--G-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~g--g-ILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
.++|+|...-+.+.+.+.++.- + ++.-+.|+||+..+.++..++.+..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~ 52 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ 52 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 4688999998888888776542 3 6889999999999999999998753
No 303
>PF13173 AAA_14: AAA domain
Probab=70.34 E-value=21 Score=35.49 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=0.0
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCc
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINP 533 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~ 533 (1196)
++.-.+|--..|.|||..+-.++..+. ....++.+-=.....+...+.. ..
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~-~~------------------------ 51 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD-LL------------------------ 51 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh-hH------------------------
Q ss_pred ccccccCCCceEEEEehhhHHhcHhhhhcc---CccEEEECCCccccCcccHHHHHHHhccccceEEeecC
Q 000994 534 KRLYRRDAGFHILITSYQLLVADEKYFRRV---KWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGT 601 (1196)
Q Consensus 534 ~~~~~~~~~~~VvItSYe~l~~d~~~l~~~---~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGT 601 (1196)
..+.+. +-.+|++||+|++.+.....-..+... ...++++||+
T Consensus 52 ------------------------~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 52 ------------------------EYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred ------------------------HHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEcc
No 304
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=69.93 E-value=3.9e+02 Score=35.92 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 000994 195 EKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDML 264 (1196)
Q Consensus 195 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~r~~re~~ 264 (1196)
+.-.+|+..++++..-+ .|.+-..+- .+.-.+|....---=++-...=..-..+|++.|-.|+-|++-
T Consensus 750 ~ved~if~~f~~~igv~-ir~Yee~~~-~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~ 817 (1141)
T KOG0018|consen 750 KVEDRIFKGFCRRIGVR-IREYEEREL-QQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVE 817 (1141)
T ss_pred HHHHHHHHHhhhhcCee-eehHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHH
Confidence 45688999999998766 887776666 555555554433222221111111112677666666555443
No 305
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=69.79 E-value=23 Score=42.70 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
.+|--..|+|||..+-++...+...
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 4789999999999998888877654
No 306
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=69.42 E-value=13 Score=43.14 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=74.7
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCC
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1196)
|..-|||+=...--.-+...|...|+..--+...+.++||.-.-..|-. ++|.|++ .|-|-|.||+-....-||.-..
T Consensus 317 gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a-~eiqviv-atvafgmgidkpdvrfvihhsl 394 (695)
T KOG0353|consen 317 GQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA-GEIQVIV-ATVAFGMGIDKPDVRFVIHHSL 394 (695)
T ss_pred CCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc-cceEEEE-EEeeecccCCCCCeeEEEeccc
Confidence 6778999888888888999999999988888888888899888888865 7888855 5689999999999999999888
Q ss_pred CCCcchHHHH
Q 000994 1152 DWNPTLDLQA 1161 (1196)
Q Consensus 1152 dWNPt~d~QA 1161 (1196)
+-.-...-||
T Consensus 395 ~ksienyyqa 404 (695)
T KOG0353|consen 395 PKSIENYYQA 404 (695)
T ss_pred chhHHHHHHH
Confidence 8777777784
No 307
>PRK11823 DNA repair protein RadA; Provisional
Probab=69.11 E-value=20 Score=43.82 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=40.1
Q ss_pred HHHHHHHH-hhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHH
Q 000994 443 KGLQWLVN-CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1196)
Q Consensus 443 ~gl~wL~~-~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k 507 (1196)
.++..++. -+..|.-.+|.-++|.|||..++.++...... .+++|.|.-.....++.....+
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccccHHHHHHHHHH
Confidence 34555552 11223335789999999999999998877643 2578888866555555544444
No 308
>PRK06921 hypothetical protein; Provisional
Probab=69.04 E-value=37 Score=38.59 Aligned_cols=28 Identities=25% Similarity=0.107 Sum_probs=23.4
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
+.+.+|.-++|+|||..+.|++..+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 4567888999999999999988887654
No 309
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=68.97 E-value=1.6e+02 Score=37.92 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc-CCcEEEEeC-CccHHHHHHHHHHh
Q 000994 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAP-ASVLNNWADEISRF 508 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~-~gp~LIV~P-~sll~nW~~Ei~k~ 508 (1196)
|-|-|.+++.+ ..+..++-.-.|.|||-+.+.-+.++....+. ...+|+|+. .....+-.+.+.+.
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 66889998854 23456666679999999999999998865332 245777765 44444455555443
No 310
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=68.84 E-value=77 Score=37.75 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHH-Hhhh--cCCCeEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 438 KEYQLKGLQWLV-NCYE--QGLNGILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 438 rpyQl~gl~wL~-~~~~--~~~ggILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
|+-|++-+.-.+ .... ...+.++.-..|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 455555553333 3222 234579999999999999999988876543
No 311
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=68.81 E-value=16 Score=46.10 Aligned_cols=43 Identities=26% Similarity=0.150 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 441 QLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
|...+..+.+.+..+. .-|+.-..|.|||..|.++...+.+..
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 3344444555444432 237899999999999999998886543
No 312
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=68.78 E-value=19 Score=48.12 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=5.4
Q ss_pred EeecCCCCCC
Q 000994 597 LLTGTPIQNN 606 (1196)
Q Consensus 597 lLTGTPiqN~ 606 (1196)
.-|||-|.|+
T Consensus 722 ~~~~~~~~~~ 731 (1021)
T PTZ00266 722 GNTGMNVNCK 731 (1021)
T ss_pred CCCcceeccc
Confidence 3456665554
No 313
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=68.00 E-value=30 Score=34.84 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=25.1
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
++.-..|.|||..+..++...... .++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATK---GGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECC
Confidence 456679999999999888877652 2577777654
No 314
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=67.79 E-value=24 Score=41.99 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 440 YQLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
-|..+...+.+.+..+. .-++.-..|+|||..+.+|...+.+..
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 36667777777766653 247888999999999999999998754
No 315
>PRK06904 replicative DNA helicase; Validated
Probab=67.45 E-value=54 Score=40.50 Aligned_cols=62 Identities=19% Similarity=0.088 Sum_probs=43.1
Q ss_pred HHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHh
Q 000994 445 LQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1196)
Q Consensus 445 l~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~ 508 (1196)
+.-+..-+..|.=.|||--+|+|||.-++.++...+...+ .|++++..---..++...+-..
T Consensus 211 LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g--~~Vl~fSlEMs~~ql~~Rlla~ 272 (472)
T PRK06904 211 LDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASE--KPVLVFSLEMPAEQIMMRMLAS 272 (472)
T ss_pred HHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEeccCCHHHHHHHHHHh
Confidence 3333333444545699999999999999888777654322 5899998877777777665433
No 316
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=67.40 E-value=27 Score=37.76 Aligned_cols=130 Identities=15% Similarity=0.209 Sum_probs=66.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcccccc
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYR 538 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~ 538 (1196)
+|.-..|.|||-++.-+.+++... + ..+.+|+--.-..-=.++++.|+--+.
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~--~~v~lis~D~~R~ga~eQL~~~a~~l~------------------------- 56 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-G--KKVALISADTYRIGAVEQLKTYAEILG------------------------- 56 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T----EEEEEESTSSTHHHHHHHHHHHHHT-------------------------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-c--ccceeecCCCCCccHHHHHHHHHHHhc-------------------------
Confidence 567789999999998888877655 2 456666653322222333333321111
Q ss_pred cCCCceEEEEeh-----hhHHhcHhhhhccCccEEEECCCccccCcccHH--HHHHHh-c-cccceEEeecCCCCCChHH
Q 000994 539 RDAGFHILITSY-----QLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIR--WKTLLS-F-NCRNRLLLTGTPIQNNMAE 609 (1196)
Q Consensus 539 ~~~~~~VvItSY-----e~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~--~kal~~-l-~~~~RllLTGTPiqN~l~E 609 (1196)
..+..... +.+......+..-++++|++|-+-+.-+..... .+.+.. . ....-|+|++|--+..+.+
T Consensus 57 ----vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~ 132 (196)
T PF00448_consen 57 ----VPFYVARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQ 132 (196)
T ss_dssp ----EEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHH
T ss_pred ----cccchhhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHH
Confidence 11111110 111122233444568999999987654332221 122222 2 3456688888887766666
Q ss_pred HHHHHHhhCCC
Q 000994 610 LWALLHFIMPT 620 (1196)
Q Consensus 610 L~sLL~FL~P~ 620 (1196)
+......+.++
T Consensus 133 ~~~~~~~~~~~ 143 (196)
T PF00448_consen 133 ALAFYEAFGID 143 (196)
T ss_dssp HHHHHHHSSTC
T ss_pred HHHHhhcccCc
Confidence 65555555443
No 317
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.38 E-value=16 Score=46.28 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=26.7
Q ss_pred HHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 445 LQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 445 l~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
+..|.+...++. .-|+.-+.|.|||..+..+...+.+.
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 344444444432 34678999999999999998888653
No 318
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=67.15 E-value=42 Score=36.80 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=21.9
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
.+.+-+|.-+.|.|||..+.++......
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3446799999999999988877766543
No 319
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=66.84 E-value=37 Score=43.87 Aligned_cols=109 Identities=14% Similarity=0.238 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhhC---C---CeEEEEecchHHHHHHHHHHHhC----CCcE-EEEeCCCCHHHHHHHHHHHccCCCceE
Q 000994 1058 LQTLDILLKRLRAE---N---HRVLLFAQMTKMLNILEDYMNYR----KYRY-LRLDGSSTIMDRRDMVRDFQHRSDIFV 1126 (1196)
Q Consensus 1058 L~~Ld~LL~~Lk~~---g---hKVLIFSQ~t~mlDlLee~L~~r----g~~y-~rLDGStk~~dR~~~V~dFq~~~di~V 1126 (1196)
-..++..|.++... | .|.|||+--....+.|.+.|... +.+| +.++|... .=+..|.+|-.+...-.
T Consensus 406 ~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~ 483 (875)
T COG4096 406 TETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPR 483 (875)
T ss_pred HHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCc
Confidence 34555555555443 4 59999999999999999888653 3344 56788764 66778899977444445
Q ss_pred EEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhcc
Q 000994 1127 FLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRL 1168 (1196)
Q Consensus 1127 fLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRi 1168 (1196)
+.+|..-...||+...+-.++|+-.--+-+--.|-+||.-|+
T Consensus 484 IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 484 IAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 577888999999999999999999999999999999999998
No 320
>PRK13342 recombination factor protein RarA; Reviewed
Probab=66.67 E-value=30 Score=41.89 Aligned_cols=22 Identities=32% Similarity=0.211 Sum_probs=17.7
Q ss_pred CeEEEeCCCCChHHHHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAH 478 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~ 478 (1196)
+.||.-+.|+|||..+-++...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999887766543
No 321
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=66.55 E-value=14 Score=36.12 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=24.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHH
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNN 500 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~n 500 (1196)
+|--.+|.|||..+-.++..+. -+++.+....+...
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~------~~~~~i~~~~~~~~ 37 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLG------FPFIEIDGSELISS 37 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTT------SEEEEEETTHHHTS
T ss_pred EEECcCCCCeeHHHHHHHhhcc------cccccccccccccc
Confidence 4566799999998887776652 36666666655433
No 322
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=66.37 E-value=12 Score=42.66 Aligned_cols=55 Identities=22% Similarity=0.179 Sum_probs=38.6
Q ss_pred CcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcc-cCCcEEEEeCCcc
Q 000994 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKN-IWGPFLVVAPASV 497 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~-~~gp~LIV~P~sl 497 (1196)
|-+-|.+.+++ . .+ ..++-.-.|.|||.+.+.-+.++....+ ....+|+|++...
T Consensus 1 l~~eQ~~~i~~-~----~~-~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~ 56 (315)
T PF00580_consen 1 LTDEQRRIIRS-T----EG-PLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNA 56 (315)
T ss_dssp S-HHHHHHHHS------SS-EEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHH
T ss_pred CCHHHHHHHhC-C----CC-CEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHH
Confidence 44678888876 2 33 4455556999999999999888877652 3357999998655
No 323
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=66.35 E-value=69 Score=34.66 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=68.7
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHH-HHHHH--HhCCCCccccccCChhhHHHHhhc
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNW-ADEIS--RFCPDLKTLPYWGGLQERMVLRKN 530 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW-~~Ei~--k~~p~l~v~~y~G~~~~r~~l~~~ 530 (1196)
.....++.--.|-|||-.|+++........ .+++||= .+-..| ..|.. +.+|.+.+..+..+..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---~~V~ivQ--FlKg~~~~GE~~~l~~l~~v~~~~~g~~~~-------- 87 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG---KKVGVVQ--FIKGAWSTGERNLLEFGGGVEFHVMGTGFT-------- 87 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC---CeEEEEE--EecCCCccCHHHHHhcCCCcEEEECCCCCc--------
Confidence 444678888999999999999887766543 3666652 111112 12221 1123322222111000
Q ss_pred cCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCc----ccHHHHHHHhccccceEEeecCCCCCC
Q 000994 531 INPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSS----NSIRWKTLLSFNCRNRLLLTGTPIQNN 606 (1196)
Q Consensus 531 ~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~----~S~~~kal~~l~~~~RllLTGTPiqN~ 606 (1196)
|.. ....-+. -.--+.+......+..-.|++|||||.-..-+. .......+..-+..--++|||--....
T Consensus 88 ~~~-----~~~~e~~-~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~ 161 (191)
T PRK05986 88 WET-----QDRERDI-AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRE 161 (191)
T ss_pred ccC-----CCcHHHH-HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 000 0000000 000011222244556678999999998765442 223334444334445799999855444
Q ss_pred hHHHHHH
Q 000994 607 MAELWAL 613 (1196)
Q Consensus 607 l~EL~sL 613 (1196)
+.|+..+
T Consensus 162 Lie~ADl 168 (191)
T PRK05986 162 LIEAADL 168 (191)
T ss_pred HHHhCch
Confidence 4444333
No 324
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=65.98 E-value=58 Score=39.85 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=25.2
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEe
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~ 493 (1196)
.-+|.-+.|+|||.-+-++...+....+. ..++.|.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~-~~v~yi~ 167 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYIT 167 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEE
Confidence 35888899999999998888777654321 2444443
No 325
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.38 E-value=44 Score=41.69 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=67.9
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEe
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR-KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLS 1130 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~r-g~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLS 1130 (1196)
.|.|||-.+...++......|.+|||-+.-.....-+.+.|..+ +.....+.|.++..+|.+...+-.. ++..| ++.
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~-g~~~I-VVG 82 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN-GEILV-VIG 82 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc-CCCCE-EEC
Confidence 57899999988888888888999999998887776666666543 6788999999998888877666543 34455 556
Q ss_pred cCccccccCcccCCEEEEeC
Q 000994 1131 TRAGGLGINLTAADTVIFYE 1150 (1196)
Q Consensus 1131 TrAGGlGINLTaAdtVIfyD 1150 (1196)
|++. +=+-+..-+.||+=|
T Consensus 83 Trsa-lf~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSA-LFLPFKNLGLIIVDE 101 (505)
T ss_pred ChHH-HcCcccCCCEEEEEC
Confidence 6652 223344445555443
No 326
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=65.19 E-value=34 Score=45.88 Aligned_cols=58 Identities=16% Similarity=0.058 Sum_probs=39.4
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHH
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN 499 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~ 499 (1196)
.|-+-|.+++..++. .+.-.+|---.|.|||.+.-+++..+ +..+ ..+++++|.....
T Consensus 346 ~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~~~~~~~-e~~G--~~V~~~ApTGkAA 403 (988)
T PRK13889 346 VLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLGVAREAW-EAAG--YEVRGAALSGIAA 403 (988)
T ss_pred CCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEecCcHHHH
Confidence 588999999987763 22246788889999998754444333 3322 3678888876543
No 327
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=65.19 E-value=8.3 Score=44.86 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=29.1
Q ss_pred CccEEEECCCccccCcccHHHH-HHHhccccceEEeecCCCCCCh
Q 000994 564 KWQYMVLDEAQAIKSSNSIRWK-TLLSFNCRNRLLLTGTPIQNNM 607 (1196)
Q Consensus 564 ~w~~VIlDEAH~iKn~~S~~~k-al~~l~~~~RllLTGTPiqN~l 607 (1196)
.=.+||+||||+ ....+.+ .|.++-...+..+||.+.|=++
T Consensus 243 ~dAfVIlDEaQN---tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 243 NDAFVILDEAQN---TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred CCeEEEEecccc---cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 446899999997 2333333 3445677889999999987554
No 328
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=64.94 E-value=24 Score=43.25 Aligned_cols=34 Identities=32% Similarity=0.233 Sum_probs=24.6
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEe
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~ 493 (1196)
+.+|.-+.|+|||..+-++...+.... .+++.+.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~---~~v~yi~ 176 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESG---GKILYVR 176 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEee
Confidence 357888999999999988887776531 3555444
No 329
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.77 E-value=17 Score=46.04 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhhcCC--Ce-EEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 441 QLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~--gg-ILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
|...+..|.+....+. .+ |+.-+.|.|||..+.+++..+.+..
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~ 66 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQ 66 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCC
Confidence 3344444444444442 34 7888999999999999998887543
No 330
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=64.67 E-value=21 Score=40.37 Aligned_cols=63 Identities=27% Similarity=0.342 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHH
Q 000994 440 YQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei 505 (1196)
.++..+.-+...+.++.|.+|--.+|.|||..++|+...+. ..+ .+++++.=+.++.+++..+
T Consensus 90 ~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 90 KALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHH
Confidence 33334433344444788889999999999999999998888 443 3666665455555555444
No 331
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=64.64 E-value=39 Score=39.51 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=39.3
Q ss_pred cCcHHHHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 436 SLKEYQLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
.++|+|...-+.+...+.++. .-++.-..|+||+..|.+++..+.+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478899888888888776654 347889999999999999999888754
No 332
>PRK05580 primosome assembly protein PriA; Validated
Probab=64.60 E-value=46 Score=43.07 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=68.9
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEe
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNY-RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLS 1130 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~-rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLS 1130 (1196)
.|.|||-.....++......|.+|||-+.-.....-+.+.|.. -|.+...+.|.++..+|.+...+... +++.| +++
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~-g~~~I-VVg 247 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR-GEAKV-VIG 247 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc-CCCCE-EEe
Confidence 4789999988888877777799999999988777766666654 47889999999998898877777654 34445 556
Q ss_pred cCccccccCcccCCEEEEeC
Q 000994 1131 TRAGGLGINLTAADTVIFYE 1150 (1196)
Q Consensus 1131 TrAGGlGINLTaAdtVIfyD 1150 (1196)
|+.. +=+.+..-..||+=|
T Consensus 248 Trsa-l~~p~~~l~liVvDE 266 (679)
T PRK05580 248 ARSA-LFLPFKNLGLIIVDE 266 (679)
T ss_pred ccHH-hcccccCCCEEEEEC
Confidence 6643 224444555555543
No 333
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=64.45 E-value=32 Score=36.43 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=38.4
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcc-------cCCcEEEEeCCccHHHHHHHHHHhC
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKN-------IWGPFLVVAPASVLNNWADEISRFC 509 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~-------~~gp~LIV~P~sll~nW~~Ei~k~~ 509 (1196)
.|.-++++-..|.|||..++.++.++....+ ..+++|+|..-....++..-+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 4445799999999999999999988875322 2358899988777667777666544
No 334
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=64.41 E-value=35 Score=44.81 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHH-Hhhh-cCC-CeE-EEeCCCCChHHHHHHHHHHHHH
Q 000994 438 KEYQLKGLQWLV-NCYE-QGL-NGI-LADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 438 rpyQl~gl~wL~-~~~~-~~~-ggI-LADeMGLGKTlqaIall~~l~~ 481 (1196)
|+-|.+.|.-.+ .... .+. +++ +.-.+|+|||.++-.++..+.+
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445555553333 2332 222 233 7999999999999998877754
No 335
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=64.09 E-value=64 Score=36.82 Aligned_cols=125 Identities=16% Similarity=0.222 Sum_probs=66.9
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC----ccHHHHHHHHHHhCCCCccccccCChhhHHHHhhcc
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA----SVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNI 531 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~----sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~ 531 (1196)
....+.-..|.|||.....+...+.... ..+.+|.-. ..+.||.......
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~---~~v~~i~~D~~ri~~~~ql~~~~~~~----------------------- 129 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQDYVKTI----------------------- 129 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEecCCCCHHHHHHHHHHhhhc-----------------------
Confidence 3456777799999998777666654321 345555542 3455665433221
Q ss_pred CcccccccCCCceEEE-EehhhHHhcHhhhhc-cCccEEEECCCccccCcccHHHHHHHhc----cc-cceEEeecCCCC
Q 000994 532 NPKRLYRRDAGFHILI-TSYQLLVADEKYFRR-VKWQYMVLDEAQAIKSSNSIRWKTLLSF----NC-RNRLLLTGTPIQ 604 (1196)
Q Consensus 532 ~~~~~~~~~~~~~VvI-tSYe~l~~d~~~l~~-~~w~~VIlDEAH~iKn~~S~~~kal~~l----~~-~~RllLTGTPiq 604 (1196)
++.+.. .+...+......+.. .++++||+|-+=+.-.. ......+..+ .. ...++|++|--.
T Consensus 130 ----------~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~-~~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 130 ----------GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRA-SETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred ----------CceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCC-HHHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 122222 122333333333433 36899999988765322 2223333322 22 234668888777
Q ss_pred CChHHHHHHHHhh
Q 000994 605 NNMAELWALLHFI 617 (1196)
Q Consensus 605 N~l~EL~sLL~FL 617 (1196)
+.+.+....++-+
T Consensus 199 ~d~~~~~~~f~~~ 211 (270)
T PRK06731 199 KDMIEIITNFKDI 211 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 7777766555544
No 336
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=63.82 E-value=39 Score=43.78 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=63.1
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHH----HHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEE
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKML----NILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~ml----DlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfL 1128 (1196)
+.|||-.+..-.+-.....|.+|+|-+.-.... +.+..++...|++...+.|+++..+|+.......+ +++.|++
T Consensus 291 TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~-g~~~IvV 369 (681)
T PRK10917 291 VGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS-GEADIVI 369 (681)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC-CCCCEEE
Confidence 679999854433333345689999998866544 35556666678999999999999999999998865 3455544
Q ss_pred EecCc-cccccCcccCCEEEE
Q 000994 1129 LSTRA-GGLGINLTAADTVIF 1148 (1196)
Q Consensus 1129 LSTrA-GGlGINLTaAdtVIf 1148 (1196)
.|.+ -...+++.....||+
T Consensus 370 -gT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 370 -GTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred -chHHHhcccchhcccceEEE
Confidence 3332 223445555555544
No 337
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.77 E-value=16 Score=46.47 Aligned_cols=43 Identities=21% Similarity=0.136 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 440 YQLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
.|...+..|.+....+. .-|+.-..|.|||..|..+...+.+.
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35566666666665542 24688999999999999998888664
No 338
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=63.73 E-value=47 Score=43.92 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=49.0
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHH--HHHHHHH
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNN--WADEISR 507 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~n--W~~Ei~k 507 (1196)
..|+-|.+..+.+.+.+..+...++-..+|.|||+.-+.-+... .. ..+++|.||...|.+ +.+++..
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~--~~--~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQ--SD--QRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHh--cC--CCcEEEEeCcHHHHHHHHHHHHHH
Confidence 78999999999999888887777788899999998654332221 11 258999999766554 4455543
No 339
>PRK09183 transposase/IS protein; Provisional
Probab=63.06 E-value=48 Score=37.53 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 441 QLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
++.++.|+ ..+.+.+|.-+.|.|||..+.++......
T Consensus 92 ~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 92 SLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred HHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45555563 36778888899999999999988655443
No 340
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=62.57 E-value=11 Score=42.11 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=20.2
Q ss_pred CCCChHHHHHHHHHHHHHhcccCCcEEEE
Q 000994 464 MGLGKTIQAMAFLAHLAEEKNIWGPFLVV 492 (1196)
Q Consensus 464 MGLGKTlqaIall~~l~~~~~~~gp~LIV 492 (1196)
=|.|||-.+.++...+...+ .++|+|
T Consensus 11 GGvG~TTltAnLA~aL~~~G---~~VlaI 36 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLG---ESVLAI 36 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCC---CcEEEE
Confidence 48999999999988887653 366665
No 341
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=62.57 E-value=81 Score=32.78 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=34.7
Q ss_pred cCccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhC
Q 000994 563 VKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIM 618 (1196)
Q Consensus 563 ~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~ 618 (1196)
-++++||+|=...+.+ ....+..+.....+++..+|-..++.+...++.++.
T Consensus 66 ~~yD~VIiD~pp~~~~----~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~ 117 (169)
T cd02037 66 GELDYLVIDMPPGTGD----EHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFK 117 (169)
T ss_pred CCCCEEEEeCCCCCcH----HHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHH
Confidence 4789999998876521 111222223446667777888888988888888774
No 342
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=61.79 E-value=31 Score=36.62 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
-+|.-+.|.|||-.+..++..+...
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4788899999999999998887654
No 343
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=61.71 E-value=22 Score=45.90 Aligned_cols=42 Identities=26% Similarity=0.168 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhcCC--C-eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGL--N-GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~--g-gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...++-|.+....+. . -++.-+.|.|||..|-+++..+.+.
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3344444444444432 2 3789999999999999998887654
No 344
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=61.05 E-value=1.7e+02 Score=34.99 Aligned_cols=225 Identities=16% Similarity=0.144 Sum_probs=113.5
Q ss_pred cCcHHHHHHHHHHHHhhhcCC--CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccH---HHHHHHHHHhCC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGL--NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL---NNWADEISRFCP 510 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~--ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll---~nW~~Ei~k~~p 510 (1196)
.-|.+|..-+.-++..-..-. ..+|--..|.|||..+-.++.... .++..+++.-+. .-|..=+.+-
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n------~~~vw~n~~ecft~~~lle~IL~~~-- 80 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN------LENVWLNCVECFTYAILLEKILNKS-- 80 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC------CcceeeehHHhccHHHHHHHHHHHh--
Confidence 468999999877764222211 237888999999999988887661 355666664321 1233333322
Q ss_pred CCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhh------c-cCccEEEECCCccccCcccHH
Q 000994 511 DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFR------R-VKWQYMVLDEAQAIKSSNSIR 583 (1196)
Q Consensus 511 ~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~------~-~~w~~VIlDEAH~iKn~~S~~ 583 (1196)
....+.|...+- ..+.+..-...|. + -.--++|+|-|..++...+..
T Consensus 81 --~~~d~dg~~~~~------------------------~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~l 134 (438)
T KOG2543|consen 81 --QLADKDGDKVEG------------------------DAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAIL 134 (438)
T ss_pred --ccCCCchhhhhh------------------------HHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHH
Confidence 111122211110 0111111111111 1 134578999999999999888
Q ss_pred HHHHHhc-----cccceEEeecCCCCCChHHHHHHHH---hhCCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHH
Q 000994 584 WKTLLSF-----NCRNRLLLTGTPIQNNMAELWALLH---FIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLH 655 (1196)
Q Consensus 584 ~kal~~l-----~~~~RllLTGTPiqN~l~EL~sLL~---FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~ql~rL~ 655 (1196)
.+.+.++ ...-+++++.++..+..---++.+. +-.|. -+.++-..-+++..- +...-.--..=||
T Consensus 135 l~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~--Ys~~e~~~Il~~~~p-----~~r~~~~ya~fl~ 207 (438)
T KOG2543|consen 135 LQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQ--YSVEETQVILSRDNP-----GKRKLDVYAQFLH 207 (438)
T ss_pred HHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCC--CCHHHHHHHHhcCCc-----cccchHHHHHHHH
Confidence 8877766 2355678888876543211001000 00111 122333333322111 0000001134578
Q ss_pred HHHHHHHH-Hhhhhh---hh-ccCCCceEEEEEcCCCHHH-HHHHHHHHHHH
Q 000994 656 AILKPFML-RRVKKD---VI-SELTTKTEVMVHCKLSSRQ-QAFYQAIKNKI 701 (1196)
Q Consensus 656 ~ILkpfmL-RR~Kkd---V~-~eLP~K~E~~V~c~LT~~Q-r~lY~~l~~~i 701 (1196)
-++++|.. -|.-.. +. .-.|.-.|-++--..++.. +.+|..++..+
T Consensus 208 v~l~vF~~~crd~~eL~~~~~~~wpky~epi~~~~i~~~d~~~L~r~ik~~L 259 (438)
T KOG2543|consen 208 VLLQVFYMACRDVNELRSLISLAWPKYCEPITKGKIDPTDKARLWRHIKPFL 259 (438)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhccccccCCCChhHHHHHHHHhhHhh
Confidence 88888743 221111 11 1346677777777777777 66666666554
No 345
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=60.83 E-value=42 Score=40.23 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=67.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCccccc
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLY 537 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~ 537 (1196)
.+++-|+|.||+-.-+-+++.+... +++|.|+-.--+.||+--..+..-
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~----~~vLYVsGEES~~QiklRA~RL~~--------------------------- 144 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKR----GKVLYVSGEESLQQIKLRADRLGL--------------------------- 144 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhc----CcEEEEeCCcCHHHHHHHHHHhCC---------------------------
Confidence 3789999999997777777776654 489999999889999988877530
Q ss_pred ccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCc
Q 000994 538 RRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSS 579 (1196)
Q Consensus 538 ~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~ 579 (1196)
...++.+.....+-.-...+...++++||+|=.|.+-++
T Consensus 145 ---~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 145 ---PTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred ---CccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecc
Confidence 113466666666666677788899999999998887554
No 346
>PRK04195 replication factor C large subunit; Provisional
Probab=60.67 E-value=69 Score=39.63 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=20.0
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHL 479 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l 479 (1196)
....+|.-+.|.|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3467999999999998887776554
No 347
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=60.35 E-value=52 Score=41.77 Aligned_cols=45 Identities=20% Similarity=0.068 Sum_probs=27.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHH
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWAD 503 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~ 503 (1196)
-+|.-..|+|||.-+.|+...+...... ..++.+.-..++..+..
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g-~~V~Yitaeef~~el~~ 361 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPG-TRVRYVSSEEFTNEFIN 361 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeHHHHHHHHHH
Confidence 5788899999999988888776543221 24444433333333333
No 348
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=60.20 E-value=86 Score=34.75 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=33.5
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~ 506 (1196)
.+.-.++.-+.|.|||..+..++..+.... .+.+.|+......+-...+.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~~~~~~~~~~~ 72 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQLTTTEFIKQMM 72 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHH
Confidence 444568899999999999988888775432 46677776544433333333
No 349
>PRK08760 replicative DNA helicase; Provisional
Probab=60.15 E-value=62 Score=40.03 Aligned_cols=55 Identities=18% Similarity=0.028 Sum_probs=41.8
Q ss_pred hcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhC
Q 000994 453 EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFC 509 (1196)
Q Consensus 453 ~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~ 509 (1196)
..|.=.|||--+|+|||.-++.++.......+ .|++++..--...+|...+....
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g--~~V~~fSlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSK--KGVAVFSMEMSASQLAMRLISSN 281 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhcC--CceEEEeccCCHHHHHHHHHHhh
Confidence 34444699999999999999999887764332 48899988877888888765543
No 350
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=60.10 E-value=17 Score=38.72 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=24.4
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
+..-.|+.|||...|..+..+...+ .+++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~---~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAG---KKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT----EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhCC---CeEEEEEec
Confidence 3446799999999888776664432 478888885
No 351
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=59.83 E-value=67 Score=41.10 Aligned_cols=96 Identities=11% Similarity=0.132 Sum_probs=62.0
Q ss_pred HHHHH-HHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHccC--CCceEEEEecC
Q 000994 1057 KLQTL-DILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR-KYRYLRLDGSSTIMDRRDMVRDFQHR--SDIFVFLLSTR 1132 (1196)
Q Consensus 1057 KL~~L-d~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~r-g~~y~rLDGStk~~dR~~~V~dFq~~--~di~VfLLSTr 1132 (1196)
-...+ +.++.-+...+-++||-+..-++|..+.+.|..+ .+. +.+-|..+ .|..++++|..+ .+..-.|+.|.
T Consensus 454 ~~~~~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~ 530 (636)
T TIGR03117 454 WLENVSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAG 530 (636)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCC
Confidence 34434 4444444445556666666667777777777553 222 44456442 578899999874 23345588889
Q ss_pred ccccccCc----------ccCCEEEEeCCCCCc
Q 000994 1133 AGGLGINL----------TAADTVIFYESDWNP 1155 (1196)
Q Consensus 1133 AGGlGINL----------TaAdtVIfyDsdWNP 1155 (1196)
+...||++ -+...||+.-.++-|
T Consensus 531 sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~ 563 (636)
T TIGR03117 531 GAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL 563 (636)
T ss_pred ccccccccCCccCCCCCCCcccEEEEEeCCCCc
Confidence 99999999 357788888777655
No 352
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=59.80 E-value=34 Score=41.38 Aligned_cols=39 Identities=23% Similarity=0.092 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHH
Q 000994 440 YQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAH 478 (1196)
Q Consensus 440 yQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~ 478 (1196)
.++..+.-|+...+.+.|.|+--..|+|||-.++++..+
T Consensus 194 ~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 344444445455668889999999999999988887665
No 353
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=59.71 E-value=48 Score=43.66 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhC-CCeEEEEecchHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHccCCCc-eEEEEecCc
Q 000994 1060 TLDILLKRLRAE-NHRVLLFAQMTKMLNILEDYMNY----RKYRYLRLDGSSTIMDRRDMVRDFQHRSDI-FVFLLSTRA 1133 (1196)
Q Consensus 1060 ~Ld~LL~~Lk~~-ghKVLIFSQ~t~mlDlLee~L~~----rg~~y~rLDGStk~~dR~~~V~dFq~~~di-~VfLLSTrA 1133 (1196)
.+...+..+..+ ..-+|||-.=.+-|+-..+.|.. .....+=|.|..+.++... -|+..+.- +=++|||..
T Consensus 246 ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNI 322 (845)
T COG1643 246 AIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNI 322 (845)
T ss_pred HHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccc
Confidence 444444444333 46899998877777777777765 3477888999999777666 68775554 436889999
Q ss_pred cccccCcccCCEEEEeCCC------CCcch-----------HHHHHHhhhccCCCCcEEEEEeeeCCcHH
Q 000994 1134 GGLGINLTAADTVIFYESD------WNPTL-----------DLQAMDRAHRLGQTKDVSSWLKLCHLFIF 1186 (1196)
Q Consensus 1134 GGlGINLTaAdtVIfyDsd------WNPt~-----------d~QAmdRahRiGQtK~VtVYRLIt~gTIE 1186 (1196)
+-.+|.....-.|| ||- |||.. -+.|.-|++|-|-+.+=..|||.+++..+
T Consensus 323 AETSLTI~gIr~VI--DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 323 AETSLTIPGIRYVI--DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred cccceeeCCeEEEe--cCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 99998887765554 443 44432 34577799999999999999999997776
No 354
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=59.66 E-value=10 Score=44.48 Aligned_cols=140 Identities=17% Similarity=0.171 Sum_probs=78.0
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHH-HHhCCC--CccccccCChhhH-HHHhh
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI-SRFCPD--LKTLPYWGGLQER-MVLRK 529 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei-~k~~p~--l~v~~y~G~~~~r-~~l~~ 529 (1196)
.|.+.+.-...|.|||..-...++..........-.||++|..-+.+-..+. ..+... .++....|...-+ ....
T Consensus 62 ~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~- 140 (397)
T KOG0327|consen 62 KGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQA- 140 (397)
T ss_pred cCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhh-
Confidence 4567777778999999983333332211111112468999988777644443 333333 3444334432221 1100
Q ss_pred ccCcccccccCCCceEEEEehhhHHh--cHhhhhccCccEEEECCCccccCcc--cHHHHHHHhccc-cceEEeecCC
Q 000994 530 NINPKRLYRRDAGFHILITSYQLLVA--DEKYFRRVKWQYMVLDEAQAIKSSN--SIRWKTLLSFNC-RNRLLLTGTP 602 (1196)
Q Consensus 530 ~~~~~~~~~~~~~~~VvItSYe~l~~--d~~~l~~~~w~~VIlDEAH~iKn~~--S~~~kal~~l~~-~~RllLTGTP 602 (1196)
-.....+|++.|...+.. +...|..-...+.|+|||..+...+ -+....+..++. -..+++|+|-
T Consensus 141 --------i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~ 210 (397)
T KOG0327|consen 141 --------LLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATM 210 (397)
T ss_pred --------hhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccC
Confidence 011346788888765533 2235566667899999999876543 344444555543 3557788885
No 355
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=59.58 E-value=37 Score=37.17 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=37.8
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhC
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFC 509 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~ 509 (1196)
-.+++-+.|.|||+.++.++.......+ .+++.|+-.....++.+.+..+.
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~g--e~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFG--EKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS-HHHHHHHHHTTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcC--CcEEEEEecCCHHHHHHHHHHcC
Confidence 4588899999999999999977665512 47888887777777888877664
No 356
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=59.49 E-value=24 Score=44.54 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=21.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
-|+.-+.|.|||..+-+++..+...
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccc
Confidence 3899999999999999998887654
No 357
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=59.39 E-value=5.6 Score=49.76 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhC-CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCH-----HHHHHHHHHHcc--CCCceEEEEec
Q 000994 1060 TLDILLKRLRAE-NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTI-----MDRRDMVRDFQH--RSDIFVFLLST 1131 (1196)
Q Consensus 1060 ~Ld~LL~~Lk~~-ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~-----~dR~~~V~dFq~--~~di~VfLLST 1131 (1196)
-|-..+..|..- ..=|++|+..-..+..+..++...|+- .||.|.-++ .--.++...|.. ..+.-.+|++.
T Consensus 616 ~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaV 694 (821)
T KOG1133|consen 616 DLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAV 694 (821)
T ss_pred HHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEE
Confidence 344444444321 346889998888899888888876651 222222110 013456666653 12223566663
Q ss_pred Ccc---ccccCccc--CCEEEEeCCCC
Q 000994 1132 RAG---GLGINLTA--ADTVIFYESDW 1153 (1196)
Q Consensus 1132 rAG---GlGINLTa--AdtVIfyDsdW 1153 (1196)
.| ++|||+.. +--|+.+-.++
T Consensus 695 -VGGKlSEGINF~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 695 -VGGKLSEGINFSDDLGRAVVVVGLPY 720 (821)
T ss_pred -eccccccccccccccccEEEEeecCC
Confidence 44 47999874 55678777665
No 358
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=59.09 E-value=1.2e+02 Score=33.51 Aligned_cols=49 Identities=10% Similarity=0.227 Sum_probs=36.1
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHh
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~ 508 (1196)
-.+++-++|.|||.-+..++...... ..+++.|.=........+.+..+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCCHHHHHHHHHHC
Confidence 45888999999999999998765443 25778887666666666666665
No 359
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=58.85 E-value=56 Score=33.50 Aligned_cols=55 Identities=13% Similarity=0.283 Sum_probs=34.2
Q ss_pred cEEEEeCCCCHHHHHHHHHHHccCCC-ceEEEEecCc--cccccCccc--CCEEEEeCCCC
Q 000994 1098 RYLRLDGSSTIMDRRDMVRDFQHRSD-IFVFLLSTRA--GGLGINLTA--ADTVIFYESDW 1153 (1196)
Q Consensus 1098 ~y~rLDGStk~~dR~~~V~dFq~~~d-i~VfLLSTrA--GGlGINLTa--AdtVIfyDsdW 1153 (1196)
+.+.+.|... .+..++++.|....+ .-.+|+++-. -++||||.. +..||+.-.++
T Consensus 21 ~~i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 21 KPVFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred ceEEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3455556543 355789999986332 0133444433 689999985 67788876554
No 360
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=58.79 E-value=56 Score=36.32 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=27.6
Q ss_pred CCCChHHHHHHHHHHHHHhcccCCcEEEEe--CCccHHHHHH
Q 000994 464 MGLGKTIQAMAFLAHLAEEKNIWGPFLVVA--PASVLNNWAD 503 (1196)
Q Consensus 464 MGLGKTlqaIall~~l~~~~~~~gp~LIV~--P~sll~nW~~ 503 (1196)
=|.|||..++.+...+...+ .+++||= |...+..|..
T Consensus 11 GGvGKTT~a~nLA~~la~~G---~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDG---KRVALFEADENRPLTRWKE 49 (231)
T ss_pred CCccHHHHHHHHHHHHHhCC---CcEEEEeCCCCCCHHHHHH
Confidence 37899999999998887653 3666664 6666788875
No 361
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=58.74 E-value=16 Score=45.81 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=23.0
Q ss_pred HHHhhhcCCCeEEEeCCCCChHHHHHHHHH
Q 000994 448 LVNCYEQGLNGILADEMGLGKTIQAMAFLA 477 (1196)
Q Consensus 448 L~~~~~~~~ggILADeMGLGKTlqaIall~ 477 (1196)
|++....+.-.|+.-|+|.|||-|.--+|.
T Consensus 364 ll~~ir~n~vvvivgETGSGKTTQl~QyL~ 393 (1042)
T KOG0924|consen 364 LLSVIRENQVVVIVGETGSGKTTQLAQYLY 393 (1042)
T ss_pred HHHHHhhCcEEEEEecCCCCchhhhHHHHH
Confidence 455555676789999999999999765553
No 362
>PF13892 DBINO: DNA-binding domain
Probab=58.62 E-value=1.2e+02 Score=31.02 Aligned_cols=60 Identities=25% Similarity=0.285 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000994 228 KRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAE 287 (1196)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~r~~re~~~~wk~~e~~~~~~~~~~eke~~~ 287 (1196)
|+-+.-+.|-.|-.+.|+-|.++|...-=|+.-+|+-..-|+-|||+.+..++++...++
T Consensus 49 rr~~~rs~k~~Kd~~~Rakrl~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k~~~E~~e~ 108 (139)
T PF13892_consen 49 RRKQSRSQKNMKDTQLRAKRLMREMLSFWKKNEKEERELRKKAEKEALEQKKKEEEKREA 108 (139)
T ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Confidence 344455666777788899999999998889999999999999999988888776655443
No 363
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=58.11 E-value=48 Score=35.29 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=33.3
Q ss_pred HhhhhccCccEEEECCCccccCcc----cHHHHHHHhccccceEEeecCCCCCChHHH
Q 000994 557 EKYFRRVKWQYMVLDEAQAIKSSN----SIRWKTLLSFNCRNRLLLTGTPIQNNMAEL 610 (1196)
Q Consensus 557 ~~~l~~~~w~~VIlDEAH~iKn~~----S~~~kal~~l~~~~RllLTGTPiqN~l~EL 610 (1196)
.+.+..-.|++|||||.-..-+.. ......+..-+..--++|||.-....+.|+
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~ 147 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLEL 147 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 445566789999999987543322 233444444344557999998554444443
No 364
>PRK10865 protein disaggregation chaperone; Provisional
Probab=58.04 E-value=37 Score=45.18 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=26.7
Q ss_pred HHHHHHhh--hcCCCeEEEeCCCCChHHHHHHHHHHHH
Q 000994 445 LQWLVNCY--EQGLNGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 445 l~wL~~~~--~~~~ggILADeMGLGKTlqaIall~~l~ 480 (1196)
++.++... ....+.||.-++|.|||..+-++...+.
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 56666532 2445789999999999999988777664
No 365
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=57.87 E-value=88 Score=38.67 Aligned_cols=147 Identities=17% Similarity=0.117 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhhhcCC------CeEEEeCCCCChHHHHHHHHHHHHHhcccCCc-EEEEeCCcc-HHHHHHHHHHhC-
Q 000994 439 EYQLKGLQWLVNCYEQGL------NGILADEMGLGKTIQAMAFLAHLAEEKNIWGP-FLVVAPASV-LNNWADEISRFC- 509 (1196)
Q Consensus 439 pyQl~gl~wL~~~~~~~~------ggILADeMGLGKTlqaIall~~l~~~~~~~gp-~LIV~P~sl-l~nW~~Ei~k~~- 509 (1196)
|+|.--+..+... ..+. .++|.-.=|=|||..+.++..+..-..+..++ ++++++..- -..=-+++..++
T Consensus 1 PwQ~fi~~~i~G~-~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGW-RKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhce-EcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6787666655532 2121 26666678999999887776665543333344 445555321 111113333332
Q ss_pred --CCCccccccCChhhHHHHhhccCccccc-ccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHH
Q 000994 510 --PDLKTLPYWGGLQERMVLRKNINPKRLY-RRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKT 586 (1196)
Q Consensus 510 --p~l~v~~y~G~~~~r~~l~~~~~~~~~~-~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~ka 586 (1196)
|.+.... + ..+.+. ....+. ...++ .+..+.++..........++|+||+|..++. ..+.+
T Consensus 80 ~~~~l~~~~--~-----~~~~~~-~~~~i~~~~~~s------~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~ 143 (477)
T PF03354_consen 80 ASPELRKRK--K-----PKIIKS-NKKEIEFPKTGS------FFKALSSDADSLDGLNPSLAIFDELHAHKDD--ELYDA 143 (477)
T ss_pred hChhhccch--h-----hhhhhh-hceEEEEcCCCc------EEEEEecCCCCccCCCCceEEEeCCCCCCCH--HHHHH
Confidence 2222110 0 000000 001110 00011 1112234556667778999999999999763 34555
Q ss_pred HHhc---cccceEEeecCC
Q 000994 587 LLSF---NCRNRLLLTGTP 602 (1196)
Q Consensus 587 l~~l---~~~~RllLTGTP 602 (1196)
+..= .....++...|+
T Consensus 144 l~~g~~~r~~pl~~~ISTa 162 (477)
T PF03354_consen 144 LESGMGARPNPLIIIISTA 162 (477)
T ss_pred HHhhhccCCCceEEEEeCC
Confidence 5432 233444554554
No 366
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=57.70 E-value=25 Score=44.58 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=28.4
Q ss_pred cCccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCCCChHHHHH
Q 000994 563 VKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWA 612 (1196)
Q Consensus 563 ~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~s 612 (1196)
..+..+|+|=.|-|--..---...|+.-++++.++| |.+..||.
T Consensus 564 C~~aIlvvdImhGlepqtiESi~lLR~rktpFivAL------NKiDRLYg 607 (1064)
T KOG1144|consen 564 CDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVAL------NKIDRLYG 607 (1064)
T ss_pred cceEEEEeehhccCCcchhHHHHHHHhcCCCeEEee------hhhhhhcc
Confidence 467889999888874433333344444477777776 66666664
No 367
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=57.29 E-value=34 Score=45.42 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=27.5
Q ss_pred HHHHHHHhhh--cCCCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 444 GLQWLVNCYE--QGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 444 gl~wL~~~~~--~~~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
-++.++.... ...+.||.-+.|.|||..+-+++..+..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3666665432 3457799999999999999887766643
No 368
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=57.29 E-value=1.1e+02 Score=37.47 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=25.0
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P 494 (1196)
..+++-..|.|||.++..++.++... + .++++|+.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~-g--~kV~lV~~ 131 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKK-G--LKVGLVAA 131 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc-C--CeEEEecC
Confidence 35778899999999998888877653 2 24455443
No 369
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.49 E-value=11 Score=41.55 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.2
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHH
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~ 480 (1196)
.+-|++-.+|.|||-.+.++...+.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHh
Confidence 3679999999999999888887765
No 370
>CHL00095 clpC Clp protease ATP binding subunit
Probab=56.47 E-value=45 Score=44.17 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=21.4
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~ 480 (1196)
..+.||.-+.|.|||..+-++...+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 34779999999999999987776664
No 371
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=55.84 E-value=52 Score=44.22 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=5.1
Q ss_pred cchhhHHHH
Q 000994 75 LDLGSLAAM 83 (1196)
Q Consensus 75 ~~~~~~~~~ 83 (1196)
.|+-||+.+
T Consensus 224 SDVWSLG~I 232 (1021)
T PTZ00266 224 SDMWALGCI 232 (1021)
T ss_pred hHHHHHHHH
Confidence 466665543
No 372
>PRK08840 replicative DNA helicase; Provisional
Probab=55.64 E-value=96 Score=38.28 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=39.8
Q ss_pred HHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHH
Q 000994 448 LVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1196)
Q Consensus 448 L~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~ 506 (1196)
+..-+..|.=.|||--+|+|||.-++.++.......+ .|++++..---..++..-+-
T Consensus 210 ~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~--~~v~~fSlEMs~~ql~~Rll 266 (464)
T PRK08840 210 KTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQD--KPVLIFSLEMPAEQLMMRML 266 (464)
T ss_pred hhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCC--CeEEEEeccCCHHHHHHHHH
Confidence 3333344445699999999999999888777654332 58899987766666666543
No 373
>PRK12377 putative replication protein; Provisional
Probab=55.62 E-value=93 Score=35.06 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=22.6
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
.+-+|.-.+|.|||..+.|++..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 355888899999999999999888754
No 374
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=55.24 E-value=42 Score=41.27 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=35.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHh
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~ 508 (1196)
.+|+-++|.|||..++.++..+.... +++|.|...-...|......++
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g---~kvlYvs~EEs~~qi~~ra~rl 144 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQ---MKVLYVSGEESLQQIKMRAIRL 144 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEECcCCHHHHHHHHHHc
Confidence 48899999999999999887776532 5788888766666665544443
No 375
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=55.15 E-value=56 Score=42.68 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=22.1
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
..+.||.-+.|.|||..+-++...+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 447899999999999998887776654
No 376
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=55.11 E-value=72 Score=43.29 Aligned_cols=58 Identities=16% Similarity=0.050 Sum_probs=40.8
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccH
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL 498 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll 498 (1196)
..|-+-|.+++..+. ..+.-++|---.|.|||.+.-++...+... + ..++.++|...-
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~-G--~~V~g~ApTgkA 437 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAA-G--YRVVGGALAGKA 437 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHc-C--CeEEEEcCcHHH
Confidence 368999999998764 233346777789999998877766555432 2 467888887543
No 377
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=54.86 E-value=68 Score=45.65 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=41.8
Q ss_pred hhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc-CCcEEEEeCCccH
Q 000994 433 FKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAPASVL 498 (1196)
Q Consensus 433 l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~-~gp~LIV~P~sll 498 (1196)
+...|-+-|.+++..++.. ...-.+|---.|.|||.+.-+++..+...... ...++.++|..-.
T Consensus 964 ~~~~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrA 1028 (1747)
T PRK13709 964 LMEGLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRA 1028 (1747)
T ss_pred hcCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHH
Confidence 3457899999999887742 23356777789999998876666554321111 1246777887643
No 378
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=54.50 E-value=31 Score=43.81 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=54.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHHHHH----HhCCCCccccccCChhhHHHHhhccC
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEIS----RFCPDLKTLPYWGGLQERMVLRKNIN 532 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~----k~~p~l~v~~y~G~~~~r~~l~~~~~ 532 (1196)
.+..-.==-|||..+.+.+..+..... .-.+++++| ..+...--+|+. +|+|...+-...|. .. ..
T Consensus 257 tVflVPRR~GKTwivv~iI~~ll~s~~-Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe---~I-~i---- 327 (738)
T PHA03368 257 TVFLVPRRHGKTWFLVPLIALALATFR-GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE---TI-SF---- 327 (738)
T ss_pred eEEEecccCCchhhHHHHHHHHHHhCC-CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc---EE-EE----
Confidence 344445668999988777765554321 137888888 344444555544 45544222111221 00 00
Q ss_pred cccccccCCCceEEEE-ehhhHHhcHhhhhccCccEEEECCCccccC
Q 000994 533 PKRLYRRDAGFHILIT-SYQLLVADEKYFRRVKWQYMVLDEAQAIKS 578 (1196)
Q Consensus 533 ~~~~~~~~~~~~VvIt-SYe~l~~d~~~l~~~~w~~VIlDEAH~iKn 578 (1196)
. +...+...+... + .....++...++++|+||||.|+.
T Consensus 328 --~-f~nG~kstI~FaSa-----rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 328 --S-FPDGSRSTIVFASS-----HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred --E-ecCCCccEEEEEec-----cCCCCccCCcccEEEEechhhCCH
Confidence 0 000010112221 2 223346667899999999999976
No 379
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=54.39 E-value=22 Score=38.83 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=27.1
Q ss_pred CccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCCCCh
Q 000994 564 KWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNM 607 (1196)
Q Consensus 564 ~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l 607 (1196)
..+++||||++.+-. .....+........+.|.|=|.|-..
T Consensus 62 ~~~~liiDE~~~~~~---g~l~~l~~~~~~~~~~l~GDp~Q~~~ 102 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPP---GYLLLLLSLSPAKNVILFGDPLQIPY 102 (234)
T ss_pred cCCEEEEeccccCCh---HHHHHHHhhccCcceEEEECchhccC
Confidence 578999999998732 22222444444456888899988543
No 380
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=54.02 E-value=47 Score=40.75 Aligned_cols=42 Identities=24% Similarity=0.143 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhcCC--C-eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNCYEQGL--N-GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~--g-gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|...+.+|.+....+. . -|+.-+.|.|||..+.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 5556666766665543 2 3778899999999999999888653
No 381
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.00 E-value=4.1e+02 Score=30.89 Aligned_cols=62 Identities=26% Similarity=0.487 Sum_probs=44.1
Q ss_pred ccCCchhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHH
Q 000994 427 VQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1196)
Q Consensus 427 v~~P~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~ 506 (1196)
|.-|..|.+.-+|+ .|-+|.-.+|.||+.-|-|+.... + .+|.-|...-++..|.-|-+
T Consensus 153 IKFPqlFtGkR~Pw---------------rgiLLyGPPGTGKSYLAKAVATEA----n--STFFSvSSSDLvSKWmGESE 211 (439)
T KOG0739|consen 153 IKFPQLFTGKRKPW---------------RGILLYGPPGTGKSYLAKAVATEA----N--STFFSVSSSDLVSKWMGESE 211 (439)
T ss_pred ccchhhhcCCCCcc---------------eeEEEeCCCCCcHHHHHHHHHhhc----C--CceEEeehHHHHHHHhccHH
Confidence 44566666655553 255788999999999887765332 2 47788888889999999977
Q ss_pred HhC
Q 000994 507 RFC 509 (1196)
Q Consensus 507 k~~ 509 (1196)
+.+
T Consensus 212 kLV 214 (439)
T KOG0739|consen 212 KLV 214 (439)
T ss_pred HHH
Confidence 643
No 382
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=53.81 E-value=82 Score=37.73 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=27.8
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
.+...+|.-..|.|||.++..++..+....+. ..+.+|+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D 176 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTD 176 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecc
Confidence 45456888999999999998888765433221 255555543
No 383
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=53.73 E-value=1.2e+02 Score=35.37 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=23.3
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P 494 (1196)
.|.-..|.|||.++..+...+.... +.++|+.-
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~~g---~~V~Li~~ 150 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKAQG---KKVLLAAG 150 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcC---CeEEEEec
Confidence 3445899999999888887776432 46666653
No 384
>PRK07004 replicative DNA helicase; Provisional
Probab=53.54 E-value=91 Score=38.45 Aligned_cols=50 Identities=24% Similarity=0.115 Sum_probs=37.2
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei 505 (1196)
.|.-.|||--+|+|||.-++.++.+.....+ .|++++..--.-.++...+
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~--~~v~~fSlEM~~~ql~~R~ 261 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYG--LPVAVFSMEMPGTQLAMRM 261 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcC--CeEEEEeCCCCHHHHHHHH
Confidence 4444699999999999999999887764332 5888888766666665554
No 385
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=53.42 E-value=52 Score=42.83 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=17.8
Q ss_pred CeEEEeCCCCChHHHHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAH 478 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~ 478 (1196)
+.||.-+.|+|||..+-++...
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999877666543
No 386
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.31 E-value=1.4e+02 Score=37.41 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=24.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEe
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~ 493 (1196)
|...+|.-..|.|||..+..++..+...+.. +.+.+|.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~g-kkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAP-RDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CceEEEe
Confidence 3334566779999999988877766544322 3455554
No 387
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=53.19 E-value=33 Score=44.77 Aligned_cols=72 Identities=28% Similarity=0.262 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCCCC-----CcchHHHHHHhhhccCC-CCcEEEEEee
Q 000994 1107 TIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDW-----NPTLDLQAMDRAHRLGQ-TKDVSSWLKL 1180 (1196)
Q Consensus 1107 k~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdW-----NPt~d~QAmdRahRiGQ-tK~VtVYRLI 1180 (1196)
+.++|.-+=..|.. +.++|++ .|....-|+||.| .+||+=-|-. .-....|.+|||+|.|= |..--+ ||
T Consensus 533 T~eER~~iE~afr~-g~i~vl~-aTSTlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~Gdsi--LI 607 (1008)
T KOG0950|consen 533 TSEEREIIEAAFRE-GNIFVLV-ATSTLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSI--LI 607 (1008)
T ss_pred ccchHHHHHHHHHh-cCeEEEE-ecchhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceE--EE
Confidence 33555444446655 6677754 4455888999984 6787766654 33556799999999984 443333 44
Q ss_pred eCC
Q 000994 1181 CHL 1183 (1196)
Q Consensus 1181 t~g 1183 (1196)
++.
T Consensus 608 ~k~ 610 (1008)
T KOG0950|consen 608 IKS 610 (1008)
T ss_pred eec
Confidence 443
No 388
>PRK05748 replicative DNA helicase; Provisional
Probab=52.58 E-value=89 Score=38.28 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=41.0
Q ss_pred HHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHH
Q 000994 444 GLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1196)
Q Consensus 444 gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei 505 (1196)
+|.-+..-+..|.-.+||--+|.|||.-++.++.......+ .+++++..--.-.+....+
T Consensus 192 ~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g--~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 192 DLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTD--KNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred HHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCC--CeEEEEeCCCCHHHHHHHH
Confidence 33334333334445699999999999999999887754332 4888888766666655554
No 389
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.37 E-value=83 Score=37.30 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 441 QLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
|...+.-+.+....+. .-++.-+.|.|||..+-++...+..
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4444454555544442 4578999999999888887666543
No 390
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=51.98 E-value=1.4e+02 Score=34.85 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHHHHhhh----cCCCeEEEeCCCCChHHHHHHHHHHH
Q 000994 437 LKEYQLKGLQWLVNCYE----QGLNGILADEMGLGKTIQAMAFLAHL 479 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~----~~~ggILADeMGLGKTlqaIall~~l 479 (1196)
-++..++.+.-++.... ...+.++.-..|+|||..+-++...+
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 45555555543333221 12357999999999999888766554
No 391
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=51.94 E-value=3.5e+02 Score=35.57 Aligned_cols=43 Identities=9% Similarity=0.052 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhhchhhHHHHHHHhHHHHHHhHHHHHHHHH
Q 000994 194 MEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQR 236 (1196)
Q Consensus 194 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1196)
.++..+-|..|.+....-.....-..+....+-++|++..|+.
T Consensus 1035 ~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~ 1077 (1189)
T KOG1265|consen 1035 VNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQT 1077 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999888888888888888888888888776653
No 392
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=51.87 E-value=42 Score=39.80 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=25.6
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL 498 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll 498 (1196)
..|.+|.-+.|.|||..+-++...+. .+++-+....+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~------~~~~~v~~~~l~ 193 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSELV 193 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCC------CCEEecchHHHH
Confidence 44679999999999998877765442 355555443333
No 393
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=51.75 E-value=18 Score=38.52 Aligned_cols=48 Identities=29% Similarity=0.332 Sum_probs=32.3
Q ss_pred hcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHH
Q 000994 453 EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1196)
Q Consensus 453 ~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k 507 (1196)
+.+.|-+|.-.+|.|||..++|++..+... + .+++.+. ...+.++++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g--~~v~f~~----~~~L~~~l~~ 92 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK-G--YSVLFIT----ASDLLDELKQ 92 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT-T----EEEEE----HHHHHHHHHC
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC-C--cceeEee----cCceeccccc
Confidence 366678899999999999999999887763 2 3555553 4456666653
No 394
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=51.48 E-value=63 Score=28.82 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHH
Q 000994 197 IGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMR-GAAIRTRKL 259 (1196)
Q Consensus 197 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~~~~~r~ 259 (1196)
...-|..+. .++.-+++.|.+.+..+...++|+|..|..-.+.......|..+ ....|-++|
T Consensus 9 ~k~h~d~lL-~e~~w~a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L 71 (73)
T PF07529_consen 9 QKTHHDHLL-EEMLWMAKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRAL 71 (73)
T ss_pred cchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 355687877 78999999999999999999999999999887766555554333 333444443
No 395
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=51.15 E-value=48 Score=38.09 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
-+|.-..|.|||..+.++...+....
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 57888899999999999999887654
No 396
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=51.15 E-value=46 Score=39.35 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHHHhhhcCCCe-EEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 437 LKEYQLKGLQWLVNCYEQGLNG-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~~~~gg-ILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
++|+|...-+-|......-..+ ++.-..|.|||..+.++...+.+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4788887777777652222234 5788999999999999999888754
No 397
>PHA02518 ParA-like protein; Provisional
Probab=50.90 E-value=86 Score=33.50 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=28.3
Q ss_pred eCCCCChHHHHHHHHHHHHHhcccCCcEEEEe--CCccHHHHHH
Q 000994 462 DEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA--PASVLNNWAD 503 (1196)
Q Consensus 462 DeMGLGKTlqaIall~~l~~~~~~~gp~LIV~--P~sll~nW~~ 503 (1196)
.-=|.|||..++.+...+...+ .++|+|- |...+..|..
T Consensus 8 ~KGGvGKTT~a~~la~~la~~g---~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 8 QKGGAGKTTVATNLASWLHADG---HKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---CeEEEEeCCCCCChHHHHH
Confidence 3347999999999988887542 3666664 7777778865
No 398
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=50.65 E-value=73 Score=40.89 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=59.8
Q ss_pred ccccHHHHH-HHHHHHHhhCCCeEEEEecchHHHH----HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEE
Q 000994 1053 TDSGKLQTL-DILLKRLRAENHRVLLFAQMTKMLN----ILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVF 1127 (1196)
Q Consensus 1053 ~~SgKL~~L-d~LL~~Lk~~ghKVLIFSQ~t~mlD----lLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~Vf 1127 (1196)
+.|||-.+- ..++.. ...|.+|+|-+....... -+..++...|++...+.|+++..+|+.+.....+ +++.|+
T Consensus 265 TGSGKT~va~l~il~~-~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~-g~~~Ii 342 (630)
T TIGR00643 265 VGSGKTLVAALAMLAA-IEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS-GQIHLV 342 (630)
T ss_pred CCCcHHHHHHHHHHHH-HHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC-CCCCEE
Confidence 779999754 334443 456889999988765544 3444555568999999999999999998888765 344443
Q ss_pred EEecCc-cccccCcccCCEEEE
Q 000994 1128 LLSTRA-GGLGINLTAADTVIF 1148 (1196)
Q Consensus 1128 LLSTrA-GGlGINLTaAdtVIf 1148 (1196)
+ .|.+ .-.++++.....||+
T Consensus 343 V-gT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 343 V-GTHALIQEKVEFKRLALVII 363 (630)
T ss_pred E-ecHHHHhccccccccceEEE
Confidence 3 3433 222344444444443
No 399
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=50.59 E-value=1.1e+02 Score=34.45 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=34.8
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei 505 (1196)
.|.-.+|+-..|.|||..++.++..+....+ .+++++.-.....++...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g--~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHG--VRVGTISLEEPVVRTARRL 78 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC--ceEEEEEcccCHHHHHHHH
Confidence 4555789999999999999998887765422 4778887644444444333
No 400
>PRK08006 replicative DNA helicase; Provisional
Probab=50.38 E-value=72 Score=39.44 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=39.9
Q ss_pred HHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHH
Q 000994 448 LVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1196)
Q Consensus 448 L~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~ 506 (1196)
+..-+..|.=.|||--+|+|||.-++.++.......+ .|++++..---..++..-+-
T Consensus 217 ~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g--~~V~~fSlEM~~~ql~~Rll 273 (471)
T PRK08006 217 KTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQD--KPVLIFSLEMPGEQIMMRML 273 (471)
T ss_pred hhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CeEEEEeccCCHHHHHHHHH
Confidence 3333334444699999999999999988877764322 58888887666666665544
No 401
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=50.11 E-value=1.3e+02 Score=36.70 Aligned_cols=50 Identities=20% Similarity=0.136 Sum_probs=35.7
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei 505 (1196)
.|.-.+|+-.+|.|||.-++.++.......+ .+++++..--.-.+....+
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g--~~vl~~SlEm~~~~i~~R~ 243 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEG--KPVAFFSLEMSAEQLAMRM 243 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCC--CeEEEEeCcCCHHHHHHHH
Confidence 4444599999999999999999887765333 4788888765555544443
No 402
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=49.95 E-value=38 Score=38.32 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEe
Q 000994 439 EYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1196)
Q Consensus 439 pyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~ 493 (1196)
|+..+-+..+......+...+|-.++|.|||..|-++...+ ..|++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 34444455555556678888999999999999998776533 14777664
No 403
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=49.80 E-value=2.2e+02 Score=31.73 Aligned_cols=40 Identities=35% Similarity=0.597 Sum_probs=29.3
Q ss_pred CCChHHHHHHHHHHHHHhcccCCcEEEEe--CCccHHHHHHHHHH
Q 000994 465 GLGKTIQAMAFLAHLAEEKNIWGPFLVVA--PASVLNNWADEISR 507 (1196)
Q Consensus 465 GLGKTlqaIall~~l~~~~~~~gp~LIV~--P~sll~nW~~Ei~k 507 (1196)
|.|||-.++++...+...+ +++.||= |..-+..|.+-..+
T Consensus 12 GaGKTT~~~~LAs~la~~G---~~V~lIDaDpn~pl~~W~~~a~~ 53 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARG---ARVALIDADPNQPLAKWAENAQR 53 (231)
T ss_pred CCcHHHHHHHHHHHHHHCC---CeEEEEeCCCCCcHHHHHHhccc
Confidence 7899999999988887653 3555554 67778899775543
No 404
>PF12622 NpwBP: mRNA biogenesis factor
Probab=49.39 E-value=8.3 Score=32.10 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=9.8
Q ss_pred EEEeCCCCCcc
Q 000994 1146 VIFYESDWNPT 1156 (1196)
Q Consensus 1146 VIfyDsdWNPt 1156 (1196)
=||||+.|||.
T Consensus 4 SiyydP~~NP~ 14 (48)
T PF12622_consen 4 SIYYDPELNPL 14 (48)
T ss_pred ceecCCccCCC
Confidence 48999999995
No 405
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=49.05 E-value=47 Score=41.79 Aligned_cols=126 Identities=22% Similarity=0.280 Sum_probs=65.4
Q ss_pred hcCCCeEEEeCCCCChHHHHHHHHHHHHH-hcccCCcEEEEeC-Ccc----HHHHHHHHHHhCCCCccccccCChhhHHH
Q 000994 453 EQGLNGILADEMGLGKTIQAMAFLAHLAE-EKNIWGPFLVVAP-ASV----LNNWADEISRFCPDLKTLPYWGGLQERMV 526 (1196)
Q Consensus 453 ~~~~ggILADeMGLGKTlqaIall~~l~~-~~~~~gp~LIV~P-~sl----l~nW~~Ei~k~~p~l~v~~y~G~~~~r~~ 526 (1196)
.|.-.+.|. .=-=|||...+++|+.+.. -.++ .+..|+- +.+ ...-...+.+|+|.-.+..-.|+ ...
T Consensus 201 KQkaTVFLV-PRRHGKTWf~VpiIsllL~s~~gI--~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~---tI~ 274 (668)
T PHA03372 201 KQKATVFLV-PRRHGKTWFIIPIISFLLKNIIGI--SIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDN---VIS 274 (668)
T ss_pred hccceEEEe-cccCCceehHHHHHHHHHHhhcCc--eEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCc---EEE
Confidence 355455554 3567999999888887765 2332 5666665 222 23334446688887554222111 000
Q ss_pred HhhccCcccccccCCCceEE-EEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhc---cccceEEeecC
Q 000994 527 LRKNINPKRLYRRDAGFHIL-ITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF---NCRNRLLLTGT 601 (1196)
Q Consensus 527 l~~~~~~~~~~~~~~~~~Vv-ItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l---~~~~RllLTGT 601 (1196)
. ..+ ..+.-++ .++|+ ...++...|+++++||||-|+-.. ...+..+ +...-+.+|-|
T Consensus 275 ~---s~p------g~Kst~~fasc~n-----~NsiRGQ~fnll~VDEA~FI~~~a---~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 275 I---DHR------GAKSTALFASCYN-----TNSIRGQNFHLLLVDEAHFIKKDA---FNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred E---ecC------CCcceeeehhhcc-----CccccCCCCCEEEEehhhccCHHH---HHHhhhhhcccCceEEEEeCC
Confidence 0 000 0010111 12132 235667789999999999996542 2333333 34444555544
No 406
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.94 E-value=1.3e+02 Score=36.73 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=33.5
Q ss_pred hhccCccEEEECCCccccCcccHHHHHHHhc--------cccceEEeecCCCCCChHHHHHHHHhhC
Q 000994 560 FRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF--------NCRNRLLLTGTPIQNNMAELWALLHFIM 618 (1196)
Q Consensus 560 l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l--------~~~~RllLTGTPiqN~l~EL~sLL~FL~ 618 (1196)
+..-.+++||+|=+-+.-.. ......+..+ .....|+|++|-=++.+.+....+..+.
T Consensus 295 l~~~~~D~VLIDTaGr~~rd-~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~ 360 (432)
T PRK12724 295 LARDGSELILIDTAGYSHRN-LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLN 360 (432)
T ss_pred HHhCCCCEEEEeCCCCCccC-HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCC
Confidence 33457899999987655222 2333333322 2245688898877666666655444443
No 407
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=48.34 E-value=37 Score=42.42 Aligned_cols=68 Identities=21% Similarity=0.216 Sum_probs=46.8
Q ss_pred hhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcc---cCCcEEEEeCCccHHHHHHH
Q 000994 432 LFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKN---IWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 432 ~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~---~~gp~LIV~P~sll~nW~~E 504 (1196)
.+..++.+-|-+.++. +.+.--|+--..|.|||-.|+--+++|...++ ..+|+||+.|..+.......
T Consensus 208 dIV~TIQkEQneIIR~-----ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 208 DIVETIQKEQNEIIRF-----EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred HHHHHhhHhHHHHHhc-----cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 3445777788777642 23333466778999999999877777665433 24689999999887655443
No 408
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=48.24 E-value=1e+02 Score=29.34 Aligned_cols=57 Identities=5% Similarity=-0.007 Sum_probs=39.4
Q ss_pred CCeEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEE
Q 000994 1072 NHRVLLFAQ------MTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1196)
Q Consensus 1072 ghKVLIFSQ------~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfL 1128 (1196)
.|+|+||+. +=..-..+..+|...|+.|..+|=....+.|..+........=..||+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 589999975 334567788899999999999987666666666555543333344554
No 409
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=48.21 E-value=31 Score=41.65 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=28.6
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNW 501 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW 501 (1196)
.+.|.+|.-..|.|||..+=+++..+. .+++.+.+..++..|
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~------~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTT------ATFIRVVGSEFVQKY 219 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEehHHHHHHh
Confidence 345779999999999998877665431 366666655444444
No 410
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=48.04 E-value=44 Score=43.67 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=21.3
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~ 480 (1196)
...+.||.-+.|.|||..+-++...+.
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 345779999999999999877765543
No 411
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=47.96 E-value=72 Score=37.26 Aligned_cols=43 Identities=21% Similarity=0.364 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 441 QLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
|...+..+.....++. .-++.-+.|.||+..+.+++..+....
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5556666666665553 348888999999999999999987653
No 412
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=47.66 E-value=90 Score=34.57 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=34.5
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhc---------ccCCcEEEEe---CCccHHHHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEK---------NIWGPFLVVA---PASVLNNWADEISR 507 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~---------~~~gp~LIV~---P~sll~nW~~Ei~k 507 (1196)
-|+|+-..|.|||..++.++..+.... ...+++|+++ |...+.+-...+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 478999999999999999988765321 1236788888 34444444444443
No 413
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=47.39 E-value=91 Score=37.70 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=31.3
Q ss_pred CccEEEECCCccccCcccHH---HHHHHhcc-ccceEEeec--CCCCCC--hHHHHHHHH
Q 000994 564 KWQYMVLDEAQAIKSSNSIR---WKTLLSFN-CRNRLLLTG--TPIQNN--MAELWALLH 615 (1196)
Q Consensus 564 ~w~~VIlDEAH~iKn~~S~~---~kal~~l~-~~~RllLTG--TPiqN~--l~EL~sLL~ 615 (1196)
.-+++++|-.|.+.+..... .-.+..+. ....+++|+ +|-+-+ ..+|.|-+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~ 234 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLE 234 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHh
Confidence 56889999999997764433 33333332 334899999 664433 234554444
No 414
>CHL00206 ycf2 Ycf2; Provisional
Probab=47.26 E-value=57 Score=46.25 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=30.6
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHH
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWA 502 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~ 502 (1196)
.|.+|.-.+|+|||..|=|++... + -|++-|....++..|.
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es----~--VPFIsISgs~fl~~~~ 1671 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNS----Y--VPFITVFLNKFLDNKP 1671 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhc----C--CceEEEEHHHHhhccc
Confidence 356889999999999887776543 2 3887777777776663
No 415
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=46.85 E-value=31 Score=42.83 Aligned_cols=43 Identities=28% Similarity=0.275 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 441 QLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
|...+..|.+...++. +-++.-.-|+|||-.+=-++..+-+..
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 4445555555554443 237777899999988877777776554
No 416
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=46.78 E-value=56 Score=42.69 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=24.0
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV 497 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl 497 (1196)
+.+.+|.-+.|.|||..+-++...+ ..+++.|....+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~i 248 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPEI 248 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHHH
Confidence 4566899999999998776654433 135555544433
No 417
>PRK04132 replication factor C small subunit; Provisional
Probab=46.63 E-value=53 Score=43.34 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=29.2
Q ss_pred CccEEEECCCccccCcc-cHHHHHHHhccccceEEeecCCCCCChHHHH
Q 000994 564 KWQYMVLDEAQAIKSSN-SIRWKTLLSFNCRNRLLLTGTPIQNNMAELW 611 (1196)
Q Consensus 564 ~w~~VIlDEAH~iKn~~-S~~~kal~~l~~~~RllLTGTPiqN~l~EL~ 611 (1196)
++.++|+||+|.+-... ..+.+.+.......+++|+.++...-+.-+-
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr 678 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 678 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh
Confidence 47899999999994321 1222233333567788888777654444433
No 418
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=46.53 E-value=1.1e+02 Score=27.73 Aligned_cols=62 Identities=23% Similarity=0.233 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhchhhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHH
Q 000994 198 GKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKL-MRGAAIRTRKLA 260 (1196)
Q Consensus 198 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~~r~~ 260 (1196)
.+-|..+. -.+--+.+-|.+.+..+...++|+|..|+.-........+|. .|+...|-++|+
T Consensus 10 k~h~d~lL-~e~~w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~ 72 (73)
T smart00573 10 KQHWDHLL-EEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLA 72 (73)
T ss_pred CchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677776 678888999999999999999999999998777666555554 445555555543
No 419
>PRK11054 helD DNA helicase IV; Provisional
Probab=46.35 E-value=42 Score=43.38 Aligned_cols=66 Identities=20% Similarity=0.122 Sum_probs=47.9
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc-CCcEEEEeCCccHHHHHHH-HHH
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAPASVLNNWADE-ISR 507 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~-~gp~LIV~P~sll~nW~~E-i~k 507 (1196)
.|-+-|.++|.. ..+ +.++-...|.|||.+.++-++++...... ...+|+++......++..| |..
T Consensus 196 ~L~~~Q~~av~~-----~~~-~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 196 PLNPSQARAVVN-----GED-SLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCHHHHHHHhC-----CCC-CeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 588999999852 123 34555569999999999999998865432 3479999998777766555 444
No 420
>CHL00176 ftsH cell division protein; Validated
Probab=46.15 E-value=85 Score=40.30 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=18.9
Q ss_pred CCeEEEeCCCCChHHHHHHHHHH
Q 000994 456 LNGILADEMGLGKTIQAMAFLAH 478 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~ 478 (1196)
.|.+|.-++|+|||..+=++...
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999988777543
No 421
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=46.02 E-value=1.1e+02 Score=37.19 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=39.0
Q ss_pred HHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHH
Q 000994 445 LQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1196)
Q Consensus 445 l~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei 505 (1196)
|.-+..-+..|.-.+||-.+|.|||.-++.++.......+ .|++++..---..+....+
T Consensus 184 LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g--~~v~~fSlEm~~~~l~~Rl 242 (421)
T TIGR03600 184 LDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREG--KPVLFFSLEMSAEQLGERL 242 (421)
T ss_pred HHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCCHHHHHHHH
Confidence 3333333334444699999999999999999877763322 5889998655555544443
No 422
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=45.83 E-value=39 Score=35.29 Aligned_cols=43 Identities=9% Similarity=0.171 Sum_probs=40.1
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHh
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNY 1094 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~ 1094 (1196)
++.++++..+-+|+.+....|+||+|++.-..+++.|.++|+.
T Consensus 9 L~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWt 51 (154)
T PRK06646 9 TSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWT 51 (154)
T ss_pred eCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcC
Confidence 4678999999999999999999999999999999999999975
No 423
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=45.47 E-value=52 Score=38.53 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 000994 296 REAKRQQQR 304 (1196)
Q Consensus 296 ~e~~rq~rk 304 (1196)
+|.+||+||
T Consensus 313 Ke~kk~~rk 321 (321)
T PF07946_consen 313 KERKKEQRK 321 (321)
T ss_pred HHHHHhccC
Confidence 444555554
No 424
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=45.35 E-value=1.4e+02 Score=30.96 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHh
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~ 482 (1196)
++.-..|.|||..+..++..+...
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC
Confidence 566789999999999888877654
No 425
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=45.16 E-value=51 Score=43.07 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=30.7
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
..|.+|.-.+|.|||..+-++...+. .+++.|-+..++..|..|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~------~~fi~v~~~~l~~~~vGe 530 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESG------ANFIAVRGPEILSKWVGE 530 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEehHHHhhcccCc
Confidence 34568888999999998877665432 477777777666655443
No 426
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=45.10 E-value=1.2e+02 Score=35.56 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=34.1
Q ss_pred CcHHHHHHHHHHHHhhhcCCCe-EEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 437 LKEYQLKGLQWLVNCYEQGLNG-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~~~~gg-ILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
++|+|...-+-+......-..+ ++.-..|+|||..+..+...+.+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~ 49 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCET 49 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 4677777776666554332233 6889999999999999998887643
No 427
>PRK05973 replicative DNA helicase; Provisional
Probab=44.96 E-value=50 Score=36.96 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=37.3
Q ss_pred HHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHH
Q 000994 448 LVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1196)
Q Consensus 448 L~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~ 506 (1196)
+..-+..|.-.+++-.+|.|||.-++.++...... + .+++++.-.-.-.+-.+.+.
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-G--e~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-G--RTGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-C--CeEEEEEEeCCHHHHHHHHH
Confidence 33333455556999999999999999998877644 2 47888875444333333333
No 428
>PRK09165 replicative DNA helicase; Provisional
Probab=44.91 E-value=1.6e+02 Score=36.71 Aligned_cols=55 Identities=20% Similarity=0.039 Sum_probs=38.5
Q ss_pred hcCCCeEEEeCCCCChHHHHHHHHHHHHHhcc------------cCCcEEEEeCCccHHHHHHHHHH
Q 000994 453 EQGLNGILADEMGLGKTIQAMAFLAHLAEEKN------------IWGPFLVVAPASVLNNWADEISR 507 (1196)
Q Consensus 453 ~~~~ggILADeMGLGKTlqaIall~~l~~~~~------------~~gp~LIV~P~sll~nW~~Ei~k 507 (1196)
..|.=.|||--+|+|||.-++.++........ ...++|++..--...++..-+-.
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la 281 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILS 281 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHH
Confidence 34444699999999999999988877764321 12578888876666666655433
No 429
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=44.58 E-value=70 Score=35.22 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHHhhC-CCeEEEEe----------------------------------------------------
Q 000994 1053 TDSGKLQTLDILLKRLRAE-NHRVLLFA---------------------------------------------------- 1079 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~-ghKVLIFS---------------------------------------------------- 1079 (1196)
..+||-..+..++..+... |++|+.||
T Consensus 22 ~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (242)
T cd00984 22 PSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSDEDWERLAEAIGELKELPIYID 101 (242)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEe
Q ss_pred -----cchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH-------------HHHHHHccCCCceEEEEe-----------
Q 000994 1080 -----QMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRR-------------DMVRDFQHRSDIFVFLLS----------- 1130 (1196)
Q Consensus 1080 -----Q~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~-------------~~V~dFq~~~di~VfLLS----------- 1130 (1196)
.+....+.|+.+....+.+.+.||.=+...... ..+..|...-++-|+++|
T Consensus 102 ~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q~~r~~~~~~~ 181 (242)
T cd00984 102 DSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQLSRGVESRAD 181 (242)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhhhccCC
Q ss_pred -----cCccccccCcccCCEEEEeCCCCCcchHHHHHHhh------hccCCCCcEEEEE
Q 000994 1131 -----TRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRA------HRLGQTKDVSSWL 1178 (1196)
Q Consensus 1131 -----TrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRa------hRiGQtK~VtVYR 1178 (1196)
....|.|.=-+.||.||+++.+.-...+.-.-+.+ +|-|++..+..+.
T Consensus 182 ~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~~~~~~~~~~~l~v~KnR~G~~g~~~l~~ 240 (242)
T cd00984 182 KRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESESKGIAEIIVAKNRNGPTGTVELRF 240 (242)
T ss_pred CCCCHHHHhhhcccccCCCEEEEEecccccccccCCCCceEEEEECCCCCCCeeEEEEe
No 430
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=44.46 E-value=84 Score=38.49 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=28.1
Q ss_pred CCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhC
Q 000994 464 MGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFC 509 (1196)
Q Consensus 464 MGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~ 509 (1196)
-|.|||+.-..=++++....+. ..++|.+=. ++-.+.+.-+.+|+
T Consensus 185 AGSGKT~~La~Kaa~lh~knPd-~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNPD-SRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cCCCchhHHHHHHHHHhcCCCC-ceEEEEeehHHHHHHHHHHHHHHH
Confidence 6999999776666666655554 467777754 34444554444443
No 431
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=44.00 E-value=59 Score=39.31 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcccccccCCCce
Q 000994 465 GLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFH 544 (1196)
Q Consensus 465 GLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~ 544 (1196)
|.|||-++.=+..++.. ++ ..+|+||--.--.-=.+.++.......|-+|.-......+
T Consensus 110 GsGKTTt~~KLA~~lkk-~~--~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv------------------ 168 (451)
T COG0541 110 GSGKTTTAGKLAKYLKK-KG--KKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPV------------------ 168 (451)
T ss_pred CCChHhHHHHHHHHHHH-cC--CceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHH------------------
Q ss_pred EEEEehhhHHhcHhhhhccCccEEEECCCccc
Q 000994 545 ILITSYQLLVADEKYFRRVKWQYMVLDEAQAI 576 (1196)
Q Consensus 545 VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~i 576 (1196)
++.......++.-.+|+||+|-|-++
T Consensus 169 ------~Iak~al~~ak~~~~DvvIvDTAGRl 194 (451)
T COG0541 169 ------EIAKAALEKAKEEGYDVVIVDTAGRL 194 (451)
T ss_pred ------HHHHHHHHHHHHcCCCEEEEeCCCcc
No 432
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=43.47 E-value=1.1e+02 Score=35.30 Aligned_cols=47 Identities=23% Similarity=0.152 Sum_probs=35.1
Q ss_pred cCcHHHHHHHHHHHHhhhcCC--CeEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 436 SLKEYQLKGLQWLVNCYEQGL--NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~--ggILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
.|...|-..+..+.....++. .++|... |.||+..|.+|+..+.+..
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 466778888888887776664 3566654 6899999999998887654
No 433
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=43.46 E-value=34 Score=44.22 Aligned_cols=53 Identities=19% Similarity=0.098 Sum_probs=38.6
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc-CCcEEEEeC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAP 494 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~-~gp~LIV~P 494 (1196)
.|-|-|.++|.+ ..+..++....|.|||.+.++-++++....++ ...+|+|+.
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTF 55 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTF 55 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEec
Confidence 367889999864 23456666679999999999999998865333 234677766
No 434
>PRK05595 replicative DNA helicase; Provisional
Probab=43.41 E-value=76 Score=38.87 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=38.3
Q ss_pred hcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHH
Q 000994 453 EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1196)
Q Consensus 453 ~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k 507 (1196)
..|.=.++|--+|+|||.-++.++.++....+ .+++++..--.-.++...+-.
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~g--~~vl~fSlEms~~~l~~R~~a 251 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALREG--KSVAIFSLEMSKEQLAYKLLC 251 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHHcC--CcEEEEecCCCHHHHHHHHHH
Confidence 34444689999999999999999887654332 478888877666666666443
No 435
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=43.34 E-value=18 Score=47.48 Aligned_cols=111 Identities=19% Similarity=0.248 Sum_probs=72.2
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-cc----HHHHHHHHHHhCCCCccccccCChhhHHHHh
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SV----LNNWADEISRFCPDLKTLPYWGGLQERMVLR 528 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sl----l~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~ 528 (1196)
-..+..+.+..|.|||+.+-..+.+.....+. +.+.+|+|. ++ ...|..-+. .|+++++-..|....-
T Consensus 942 td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd---- 1014 (1230)
T KOG0952|consen 942 TDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPD---- 1014 (1230)
T ss_pred cchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCC----
Confidence 34467889999999999886666555555554 789999994 33 344765543 3577777777743221
Q ss_pred hccCcccccccCCCceEEEEehhhHHhcHhhhhcc----CccEEEECCCccccCc
Q 000994 529 KNINPKRLYRRDAGFHILITSYQLLVADEKYFRRV----KWQYMVLDEAQAIKSS 579 (1196)
Q Consensus 529 ~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~----~w~~VIlDEAH~iKn~ 579 (1196)
.......+++|||.+............ ....+|+||.|.++..
T Consensus 1015 --------~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 --------VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred --------hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 011134579999999875543322221 3456999999998765
No 436
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=43.31 E-value=55 Score=40.78 Aligned_cols=26 Identities=35% Similarity=0.280 Sum_probs=21.4
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~ 480 (1196)
..|.+|.-.+|.|||..+-+++..+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 44678999999999999888877664
No 437
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=42.68 E-value=1.5e+02 Score=31.23 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=34.0
Q ss_pred HhhhhccCccEEEECCCccccCc----ccHHHHHHHhccccceEEeecCCCCCChHHHH
Q 000994 557 EKYFRRVKWQYMVLDEAQAIKSS----NSIRWKTLLSFNCRNRLLLTGTPIQNNMAELW 611 (1196)
Q Consensus 557 ~~~l~~~~w~~VIlDEAH~iKn~----~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~ 611 (1196)
...+....+++|||||.-..-+. .......+..-...--++|||--....+.|+.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 34455678999999998765332 22334444443445579999986555544443
No 438
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.59 E-value=1.3e+02 Score=38.61 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=20.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~ 482 (1196)
-|+.-+.|.|||-.+..+...+.+.
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4789999999999887777776543
No 439
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=42.46 E-value=15 Score=43.86 Aligned_cols=43 Identities=26% Similarity=0.552 Sum_probs=34.7
Q ss_pred cccceEEeecCCCCCChHHHHHHHHhhCCCCCC--CHHHHHHHHh
Q 000994 591 NCRNRLLLTGTPIQNNMAELWALLHFIMPTLFD--SHEQFNEWFS 633 (1196)
Q Consensus 591 ~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~--s~~~F~~~f~ 633 (1196)
+.++..++||||+.|.+.|++++-+++.++.+- ....|..|.+
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al~ergl~~fd~was 516 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGALYERGLHEFDAWAS 516 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHHHHhhhhhhhhHHH
Confidence 557779999999999999999999999888542 3456666654
No 440
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.74 E-value=60 Score=38.57 Aligned_cols=98 Identities=14% Similarity=0.256 Sum_probs=53.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcccccc
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYR 538 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~ 538 (1196)
.++-=-|.|||-++.-++.++... .|++.| ||-..-..---+.++.+....+ ++|+|+..+-
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkk--G~K~~L-vcaDTFRagAfDQLkqnA~k~~-iP~ygsyte~-------------- 166 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKK--GYKVAL-VCADTFRAGAFDQLKQNATKAR-VPFYGSYTEA-------------- 166 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhc--CCceeE-EeecccccchHHHHHHHhHhhC-CeeEeccccc--------------
Confidence 445568999999887777776544 245544 4542222222223333332222 2334421111
Q ss_pred cCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHH
Q 000994 539 RDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIR 583 (1196)
Q Consensus 539 ~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~ 583 (1196)
.+ ........+.|++-+|++||+|-+-+.+...|..
T Consensus 167 --dp-------v~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLf 202 (483)
T KOG0780|consen 167 --DP-------VKIASEGVDRFKKENFDVIIVDTSGRHKQEASLF 202 (483)
T ss_pred --ch-------HHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHH
Confidence 00 0112334566788899999999988887765543
No 441
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=41.44 E-value=81 Score=37.91 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=29.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWA 502 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~ 502 (1196)
..|.+|.-+.|.|||..+-++...+. .+++.+....++..|.
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~~~l~~~~~ 206 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSELVQKFI 206 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhC------CCEEEeehHHHhHhhc
Confidence 34678999999999999877765432 3666666665555443
No 442
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=41.36 E-value=1.1e+02 Score=28.53 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=33.2
Q ss_pred CCeEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q 000994 1072 NHRVLLFAQ------MTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVR 1116 (1196)
Q Consensus 1072 ghKVLIFSQ------~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~ 1116 (1196)
+++|+||+. +=..-..+.++|+..|+.|..+|=....+-|..+..
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~ 57 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE 57 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH
Confidence 589999987 445677888899999999999886555444444443
No 443
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=41.34 E-value=48 Score=34.03 Aligned_cols=43 Identities=19% Similarity=0.049 Sum_probs=39.3
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR 1095 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~r 1095 (1196)
+.+.++..+-+|+.+..+.|+||+|++.-....+-|.++|+.-
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~ 52 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTF 52 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 4578999999999999999999999999999999999999754
No 444
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=41.13 E-value=57 Score=38.56 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=34.5
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhC
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFC 509 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~ 509 (1196)
...|.+|-..+|+|||..|-|+....- .+++=|--..+...|--|-.|.+
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeag------a~fInv~~s~lt~KWfgE~eKlv 175 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAG------ANFINVSVSNLTSKWFGEAQKLV 175 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcC------CCcceeeccccchhhHHHHHHHH
Confidence 555778999999999998877653321 35555555666778887766643
No 445
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=40.52 E-value=2.6e+02 Score=30.71 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=19.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhc
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEK 483 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~ 483 (1196)
-+|.-+.|+|||--.-|+...+...+
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~ 62 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQH 62 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHC
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 58889999999997766666665543
No 446
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=40.41 E-value=28 Score=43.80 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=55.6
Q ss_pred HHHcc-CCCceEEEEecCccccccCcccCCEEEEe----CCCCCc-----------chHHHHHHhhhccCCCCcEEEEEe
Q 000994 1116 RDFQH-RSDIFVFLLSTRAGGLGINLTAADTVIFY----ESDWNP-----------TLDLQAMDRAHRLGQTKDVSSWLK 1179 (1196)
Q Consensus 1116 ~dFq~-~~di~VfLLSTrAGGlGINLTaAdtVIfy----DsdWNP-----------t~d~QAmdRahRiGQtK~VtVYRL 1179 (1196)
.=||. .++++-.+++|..+-..|....--.||=. -..+|| -.-++|--|++|-|.|.+-+.|||
T Consensus 614 kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRl 693 (1042)
T KOG0924|consen 614 KIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRL 693 (1042)
T ss_pred hhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeee
Confidence 34773 55677778888888877777766666521 112344 344677789999999999999999
Q ss_pred eeCCcHHHHHhcc
Q 000994 1180 LCHLFIFSMIGNG 1192 (1196)
Q Consensus 1180 It~gTIEErIl~~ 1192 (1196)
+|+.+...-|+..
T Consensus 694 YTe~ay~~eml~s 706 (1042)
T KOG0924|consen 694 YTEDAYKNEMLPS 706 (1042)
T ss_pred hhhhHHHhhcccC
Confidence 9999988877753
No 447
>PRK10867 signal recognition particle protein; Provisional
Probab=40.38 E-value=1.4e+02 Score=36.52 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcccccc
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYR 538 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~ 538 (1196)
+++-..|.|||.++.-++.++....+ .++++|+=-.--..=.+.+..|+....+-+|...
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~------------------ 163 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSG------------------ 163 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccchHHHHHHHHHHhhcCCeEEecC------------------
Q ss_pred cCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhc-----cccceEEeecC
Q 000994 539 RDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF-----NCRNRLLLTGT 601 (1196)
Q Consensus 539 ~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l-----~~~~RllLTGT 601 (1196)
..-...+...........-.+++||+|=+=++.. +......+..+ .....+++.+|
T Consensus 164 ------~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~-d~~lm~eL~~i~~~v~p~evllVlda~ 224 (433)
T PRK10867 164 ------DGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHI-DEELMDELKAIKAAVNPDEILLVVDAM 224 (433)
T ss_pred ------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCccc-CHHHHHHHHHHHHhhCCCeEEEEEecc
No 448
>PRK08506 replicative DNA helicase; Provisional
Probab=40.14 E-value=2.6e+02 Score=34.59 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=37.4
Q ss_pred hcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHH
Q 000994 453 EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1196)
Q Consensus 453 ~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~ 506 (1196)
..|.-.|+|-.+|+|||.-++.++...... ..+++++..---..++...+-
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fSlEMs~~ql~~Rll 240 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFSLEMPAEQLMLRML 240 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEeCcCCHHHHHHHHH
Confidence 344446999999999999999998877532 258889887666666655543
No 449
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=40.07 E-value=1.8e+02 Score=41.18 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=40.8
Q ss_pred hhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhc-ccCCcEEEEeCCccH
Q 000994 433 FKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEK-NIWGPFLVVAPASVL 498 (1196)
Q Consensus 433 l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~-~~~gp~LIV~P~sll 498 (1196)
+...|-+-|.+++.-++.. .+.-.+|---.|.|||.+.-+++..+.... .....++.++|..-.
T Consensus 832 ~~~~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 832 LMEKLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred hhcccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 3347999999999876632 233467777899999998755554433211 111246778886543
No 450
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=39.70 E-value=2.4e+02 Score=32.26 Aligned_cols=129 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcccccc
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYR 538 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~ 538 (1196)
++.-..|.|||-++..+..++...+ ..++||.--.--..=..++..|.
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~g---~~V~li~~D~~r~~a~~ql~~~~----------------------------- 123 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQG---KSVLLAAGDTFRAAAIEQLEEWA----------------------------- 123 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeCCCCCHHHHHHHHHHH-----------------------------
Q ss_pred cCCCceEEEEeh-----hhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhccccce-----------EEeecCC
Q 000994 539 RDAGFHILITSY-----QLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNR-----------LLLTGTP 602 (1196)
Q Consensus 539 ~~~~~~VvItSY-----e~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~R-----------llLTGTP 602 (1196)
...+..++...+ ..+.........-.+++||+|=+-+.-+ ++.....+..+..--. +++.+|-
T Consensus 124 ~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~ 202 (272)
T TIGR00064 124 KRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQN-KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT 202 (272)
T ss_pred HhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCcc-hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC
Q ss_pred CCCChHHHHHHHHhhCCC
Q 000994 603 IQNNMAELWALLHFIMPT 620 (1196)
Q Consensus 603 iqN~l~EL~sLL~FL~P~ 620 (1196)
-++.+...-.....+.+.
T Consensus 203 ~~~~~~~~~~f~~~~~~~ 220 (272)
T TIGR00064 203 GQNALEQAKVFNEAVGLT 220 (272)
T ss_pred CHHHHHHHHHHHhhCCCC
No 451
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.56 E-value=1.1e+02 Score=36.59 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000994 253 AIRTRKLARDMLLFWKRVDKEMAEVRKREEREAA 286 (1196)
Q Consensus 253 ~~~~~r~~re~~~~wk~~e~~~~~~~~~~eke~~ 286 (1196)
|+++-..-++|-++-.-...+-++.++||+||.+
T Consensus 373 Q~~~e~~~K~th~~rqEaaQ~kk~Ek~Ka~kekl 406 (440)
T KOG2357|consen 373 QRVEEEFLKLTHAARQEAAQEKKAEKKKAEKEKL 406 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433334444444455555444
No 452
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=39.33 E-value=1.3e+02 Score=37.19 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHHHHHh-hhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHh
Q 000994 441 QLKGLQWLVNC-YEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1196)
Q Consensus 441 Ql~gl~wL~~~-~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~ 508 (1196)
-..++.-|+.- +..|.-.++.-++|.|||..++-|+....... .+.|+|.---...+-......+
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~g---e~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANK---ERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEeeCCHHHHHHHHHHc
Confidence 34555555521 22333468999999999999999988776542 4788888766666666666654
No 453
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=39.09 E-value=76 Score=38.04 Aligned_cols=45 Identities=7% Similarity=0.105 Sum_probs=27.8
Q ss_pred hhhhccC-ccEEEECCCccccCcccHHHHHHHhcc---ccceEEeecCCCC
Q 000994 558 KYFRRVK-WQYMVLDEAQAIKSSNSIRWKTLLSFN---CRNRLLLTGTPIQ 604 (1196)
Q Consensus 558 ~~l~~~~-w~~VIlDEAH~iKn~~S~~~kal~~l~---~~~RllLTGTPiq 604 (1196)
..+.+.. .+++++|||..+.. ...-+.+.+++ +..++++|.||-.
T Consensus 94 ~~ik~~~~~~~~~idEa~~~~~--~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 94 NKLKSGAGIAIIWFEEASQLTF--EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred hHhhCcceeeeehhhhhhhcCH--HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 3444443 58999999999842 23333333443 2235999999954
No 454
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.80 E-value=3.5e+02 Score=34.91 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=9.5
Q ss_pred CccEEEECCCccc
Q 000994 564 KWQYMVLDEAQAI 576 (1196)
Q Consensus 564 ~w~~VIlDEAH~i 576 (1196)
.=|+||++|.|.-
T Consensus 714 pGDII~V~esq~a 726 (1118)
T KOG1029|consen 714 PGDIIIVFESQAA 726 (1118)
T ss_pred CCCEEEEehhccC
Confidence 3478899988853
No 455
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=38.41 E-value=1.8e+02 Score=35.55 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=24.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEe
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~ 493 (1196)
.+++-..|.|||.++.-++.++....+ .++++|+
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~ 135 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVA 135 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEe
Confidence 478889999999999988888753322 2455554
No 456
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=38.27 E-value=93 Score=36.05 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHh
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~ 482 (1196)
++.-+-|.|||..+.+++..+.+.
T Consensus 30 Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 30 IIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred EeECCCCCCHHHHHHHHHHHHcCC
Confidence 789999999999999998887653
No 457
>PLN03086 PRLI-interacting factor K; Provisional
Probab=38.02 E-value=94 Score=39.06 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 000994 288 ALKREQELREAKRQQQRLNFLIQQTELYSHFM 319 (1196)
Q Consensus 288 ~~k~~~e~~e~~rq~rkl~fli~qtely~hf~ 319 (1196)
.|++..|..||..++|||.-.-.|.+.=.|+-
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (567)
T PLN03086 36 EAAKQREAIEAAQRSRRLDAIEAQIKADQQMQ 67 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455788888999988888877666653
No 458
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=37.73 E-value=73 Score=35.91 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=15.7
Q ss_pred cCCCeEEEeCCCCChHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFL 476 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall 476 (1196)
.|..+++.-+.|.|||..+-.++
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~ 37 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIA 37 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45566777779999996544433
No 459
>PHA00012 I assembly protein
Probab=37.71 E-value=66 Score=37.70 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=21.5
Q ss_pred EEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc
Q 000994 460 LADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV 497 (1196)
Q Consensus 460 LADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl 497 (1196)
+.--+|.|||+.+++-|...... |. .|++-..+
T Consensus 6 ITGkPGSGKSl~aV~~I~~~L~~----Gr-~VaTNidL 38 (361)
T PHA00012 6 VTGKLGAGKTLVAVSRIQDKLVK----GC-IVATNLNL 38 (361)
T ss_pred EecCCCCCchHHHHHHHHHHHHc----CC-EEEeCCcc
Confidence 34458999999999866665544 33 55554443
No 460
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=37.58 E-value=54 Score=41.56 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=37.1
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHH
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL 479 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l 479 (1196)
-+.++-|++-++-+....+.|.-||+-..+|+|||+..|......
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltW 58 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTW 58 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHH
Confidence 467888988888888888899999999999999999876554443
No 461
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=37.35 E-value=1.2e+02 Score=33.92 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=34.2
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNN 500 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~n 500 (1196)
.|.=.+||-.+|.|||.-++.++.......+ .|+|+++.--.-.+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlEm~~~~ 62 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLEMSEEE 62 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESSS-HHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCCCCHHH
Confidence 3334699999999999999999998887543 58999998655444
No 462
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=36.83 E-value=1.1e+02 Score=38.10 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=35.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhC
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFC 509 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~ 509 (1196)
-++.-++|.|||.-+..++....... .++++|.-.....+-...+..|.
T Consensus 276 ~li~G~~G~GKT~l~~~~~~~~~~~g---~~~~yis~e~~~~~i~~~~~~~g 324 (509)
T PRK09302 276 ILVSGATGTGKTLLASKFAEAACRRG---ERCLLFAFEESRAQLIRNARSWG 324 (509)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCC---CcEEEEEecCCHHHHHHHHHHcC
Confidence 47788999999999999987765432 47788876655555555555543
No 463
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.14 E-value=1e+03 Score=30.81 Aligned_cols=349 Identities=16% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHhhhh-----hhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000994 211 KYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSL-----KLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREA 285 (1196)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~k~~~~~~~r~~re~~~~wk~~e~~~~~~~~~~eke~ 285 (1196)
+..|.+.+....++...++--.+..+.-++.-.|+. |...+...+-+.+..|=..=-++.-+.+-=.+++..|-+
T Consensus 30 ~~~~~~~s~e~~~~~d~~eR~e~e~~l~~kdk~rtr~~~e~k~~~ee~~~r~~~~~ed~~~lR~~Sr~eyl~~r~~~k~e 109 (902)
T KOG0923|consen 30 RPVRRKDSEEEERQNDLKERDELEERLEKKDKDRTRNVVERKKSYEEAAKRKALEPEDRTKLRKKSRREYLKKREQKKLE 109 (902)
T ss_pred CccccccchHHHHhhhHHHHHHHHHHHHHhhHHhhhhcccchhhHHHHHHhhccCcchhhHHhhhhhhhhhhhHHHHHHH
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHhhhhhHHHHHhhhccCCCCCCCCCCCCCCCCCchhhcccCCCCCCCCCCCh----
Q 000994 286 AEALKREQELR---EAKRQQQRLNFLIQQTELYSHFMQNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDP---- 358 (1196)
Q Consensus 286 ~~~~k~~~e~~---e~~rq~rkl~fli~qtely~hf~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 358 (1196)
.-.+..++|+- ..|--++-+.-|-...|++--.-..--.....+...+....+..-+......-.+.++++.-
T Consensus 110 ~L~~~i~D~~~lf~~eklt~~e~~ele~kkell~~~~~~~~~~~~~~e~~~~y~~~~~~d~~~~~ry~d~~~~e~~~p~~ 189 (902)
T KOG0923|consen 110 ELEAEIEDEEYLFGDEKLTKREIRELEYKKELLDRGTKETESASEVEEYRSRYDQPGELDKVEPQRYVDLDEEEKVNPGA 189 (902)
T ss_pred HHHhhhcchhhhcccchhhhhhHhhhhhHHhhhhhhhhhhhcccchHHHHhhhcccccchhhhhHHHhcccchhccChHH
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh--hhccchhhhHHHhhhhhHHHhhhhhcccCCCC--cccCCCCCCCCCCcccCCchhh
Q 000994 359 EEAELKKEALKAAQNAVSKQKM--LTNTFDTECSKLREAADTEAAMLDVSVAGSGN--IDLHNPSTMPVTSTVQTPELFK 434 (1196)
Q Consensus 359 ~~~~l~~~a~~~a~~a~~~~~~--~~~~fd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~P~~l~ 434 (1196)
+-.....+.+.||.-.....-. ....|+ ...++. ++|.+.+.++.......+..-.
T Consensus 190 eq~~WEd~ql~~a~~~~ga~~~~~~~~~ye--------------------~vfdd~~~idF~~e~~~~~~~e~~~~~~~~ 249 (902)
T KOG0923|consen 190 EQRAWEDHQLGNAMLKFGAKDAKEGSDGYE--------------------FVFDDQIVIDFIQESKLAGSNEEDAKDAPT 249 (902)
T ss_pred HHHHHHHHHhhhhHhhcCCCcCcccccCce--------------------eeccchhhhhHHHhhhccccCccccchhhH
Q ss_pred cc------------CcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHH
Q 000994 435 GS------------LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWA 502 (1196)
Q Consensus 435 ~~------------LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~ 502 (1196)
.. |==||.+.- |+.....+.--|+.-|+|.|||-|.= .+|.+.+-..+.-+|-|.-.---.-.
T Consensus 250 ~~~~~~~iee~RksLPVy~ykde--ll~av~e~QVLiI~GeTGSGKTTQiP---QyL~EaGytk~gk~IgcTQPRRVAAm 324 (902)
T KOG0923|consen 250 AYERRESIEEVRKSLPVYPYKDE--LLKAVKEHQVLIIVGETGSGKTTQIP---QYLYEAGYTKGGKKIGCTQPRRVAAM 324 (902)
T ss_pred HHHHHHHHHHHHhcCCchhhHHH--HHHHHHhCcEEEEEcCCCCCcccccc---HHHHhcccccCCceEeecCcchHHHH
Q ss_pred HHHHHhCCCCcccc---------ccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCC
Q 000994 503 DEISRFCPDLKTLP---------YWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEA 573 (1196)
Q Consensus 503 ~Ei~k~~p~l~v~~---------y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEA 573 (1196)
.-..+-...+.+.. |.....++.++ =+.|-=-.++.-.....--.+.+||+|||
T Consensus 325 SVAaRVA~EMgvkLG~eVGYsIRFEdcTSekTvl-----------------KYMTDGmLlREfL~epdLasYSViiiDEA 387 (902)
T KOG0923|consen 325 SVAARVAEEMGVKLGHEVGYSIRFEDCTSEKTVL-----------------KYMTDGMLLREFLSEPDLASYSVIIVDEA 387 (902)
T ss_pred HHHHHHHHHhCcccccccceEEEeccccCcceee-----------------eeecchhHHHHHhccccccceeEEEeehh
Q ss_pred ccccCcccHHHHHHHhc----cccceEEeecC
Q 000994 574 QAIKSSNSIRWKTLLSF----NCRNRLLLTGT 601 (1196)
Q Consensus 574 H~iKn~~S~~~kal~~l----~~~~RllLTGT 601 (1196)
|.=.-..-.+.-.+..+ ..-..|+.|||
T Consensus 388 HERTL~TDILfgLvKDIar~RpdLKllIsSAT 419 (902)
T KOG0923|consen 388 HERTLHTDILFGLVKDIARFRPDLKLLISSAT 419 (902)
T ss_pred hhhhhhhhHHHHHHHHHHhhCCcceEEeeccc
No 464
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=35.52 E-value=2e+02 Score=35.90 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=41.7
Q ss_pred HHHHHHH-hhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHh
Q 000994 444 GLQWLVN-CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1196)
Q Consensus 444 gl~wL~~-~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~ 508 (1196)
++.-++. -+..|.-.+|+-++|.|||+-++.++.......+ .++|.|.=-....+-.+.+..+
T Consensus 19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~g--e~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 19 GFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFD--EPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CCEEEEEccCCHHHHHHHHHHc
Confidence 4444442 2223444588999999999999999876665422 4788888666656655555554
No 465
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=35.25 E-value=2.8e+02 Score=31.98 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=18.4
Q ss_pred EEEEehhhHHhcHhhhhccCccEEEECCCccccC
Q 000994 545 ILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKS 578 (1196)
Q Consensus 545 VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn 578 (1196)
|.+.++..- .....+....++.+|+||+-.+..
T Consensus 79 i~~~~~~~~-~~~~~~~G~~~~~i~iDE~~~~~~ 111 (384)
T PF03237_consen 79 IQFRGADSP-DSGDNIRGFEYDLIIIDEAAKVPD 111 (384)
T ss_dssp EEEES------SHHHHHTS--SEEEEESGGGSTT
T ss_pred EEEeccccc-cccccccccccceeeeeecccCch
Confidence 444444321 134566778999999999887754
No 466
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=35.19 E-value=1.1e+02 Score=39.95 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=61.9
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEe
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR-KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLS 1130 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~r-g~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLS 1130 (1196)
+|.|||.++..+++.+..+.|..|||-..=.....-+.+.|..+ |.+...+....+..+|.+.-.+... ++.+|++ .
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~-G~~~vVI-G 302 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARR-GEARVVI-G 302 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhc-CCceEEE-E
Confidence 78999999999999999999999999877655555445554333 6788899999998888887777654 7777755 4
Q ss_pred cCc
Q 000994 1131 TRA 1133 (1196)
Q Consensus 1131 TrA 1133 (1196)
||+
T Consensus 303 tRS 305 (730)
T COG1198 303 TRS 305 (730)
T ss_pred ech
Confidence 454
No 467
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=34.62 E-value=1.3e+02 Score=32.63 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=24.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS 496 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s 496 (1196)
+..-.|..|||..-|-.+......+ .+++|..|+.
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g---~~v~vfkp~i 42 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAG---MKVLVFKPAI 42 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcC---CeEEEEeccc
Confidence 4566899999997666655554432 5788888863
No 468
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=33.80 E-value=66 Score=32.72 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=23.9
Q ss_pred HHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHH
Q 000994 447 WLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 447 wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~ 480 (1196)
.+......+.-.+|.-++|.|||.-+=+++..+.
T Consensus 14 ~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 14 AFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3444444555567889999999988877776653
No 469
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=33.64 E-value=95 Score=41.16 Aligned_cols=124 Identities=15% Similarity=0.227 Sum_probs=79.2
Q ss_pred cHHHHHHHHHHHHhhC--CCeEEEEecchHHHHHHHHHHH----hCC---CcEEEEeCCCCHHHHHHHHHHHcc-CCCce
Q 000994 1056 GKLQTLDILLKRLRAE--NHRVLLFAQMTKMLNILEDYMN----YRK---YRYLRLDGSSTIMDRRDMVRDFQH-RSDIF 1125 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~--ghKVLIFSQ~t~mlDlLee~L~----~rg---~~y~rLDGStk~~dR~~~V~dFq~-~~di~ 1125 (1196)
-....+..++..+... .-.||||---..-|.-+.+.|. +.. +-...+.+++..++.+.+ |+. -++++
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 4556677777776654 3589999776555554444443 333 556778999998777766 444 23556
Q ss_pred EEEEecCccccccCcccCCEEE--------EeCCC---------C-CcchHHHHHHhhhccCCCCcEEEEEeeeCCcH
Q 000994 1126 VFLLSTRAGGLGINLTAADTVI--------FYESD---------W-NPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFI 1185 (1196)
Q Consensus 1126 VfLLSTrAGGlGINLTaAdtVI--------fyDsd---------W-NPt~d~QAmdRahRiGQtK~VtVYRLIt~gTI 1185 (1196)
=++++|--+-.+|..-..=.|| .|||- | .-+.-.|+.|||+ ..++=.+|+|+++.-.
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAG---Rv~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAG---RVRPGICYHLYTRSRY 546 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccccc---CccCCeeEEeechhhh
Confidence 6688998888887766544443 44443 2 2234456555555 5777789999998743
No 470
>PRK10818 cell division inhibitor MinD; Provisional
Probab=33.53 E-value=1.6e+02 Score=33.00 Aligned_cols=52 Identities=13% Similarity=0.379 Sum_probs=31.3
Q ss_pred hhccCccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCCCChHHHHHHHHhh
Q 000994 560 FRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFI 617 (1196)
Q Consensus 560 l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL 617 (1196)
+....+++||+|=...+.. . .+..+..-..+++.-+|=..++..+..++..+
T Consensus 109 l~~~~yd~viiD~p~~~~~----~--~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i 160 (270)
T PRK10818 109 LKAMDFEFIVCDSPAGIET----G--ALMALYFADEAIITTNPEVSSVRDSDRILGIL 160 (270)
T ss_pred HhhcCCCEEEEeCCCCccH----H--HHHHHHhCCeEEEEcCCCchHHHhHHHHHHHH
Confidence 4334699999997665521 1 22234455566666777766666666655554
No 471
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=33.44 E-value=1.6e+02 Score=33.80 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=24.9
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEe
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~ 493 (1196)
..+++-..|.|||.++..++.++...++. ..+.||.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~-~~V~li~ 231 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGN-KKVALIT 231 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCC-CeEEEEE
Confidence 34566789999999999888887654221 2555555
No 472
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=33.36 E-value=63 Score=42.17 Aligned_cols=53 Identities=23% Similarity=0.110 Sum_probs=38.2
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc-CCcEEEEeC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAP 494 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~-~gp~LIV~P 494 (1196)
.|-|-|.++|.+ ..+..++-.-.|.|||.+.+.-++++....++ ...+|+|+-
T Consensus 9 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTF 62 (721)
T PRK11773 9 SLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTF 62 (721)
T ss_pred hcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeec
Confidence 588999999863 23355666679999999999999998864333 233666654
No 473
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=32.84 E-value=2.2e+02 Score=29.20 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=36.2
Q ss_pred cEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCccc--CCEEEEeCCC
Q 000994 1098 RYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTA--ADTVIFYESD 1152 (1196)
Q Consensus 1098 ~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTa--AdtVIfyDsd 1152 (1196)
+.+.+-|.. ..+...+++.|....+. .+|+++....+|||+.. +..||+.-.+
T Consensus 24 ~~i~~e~~~-~~~~~~~l~~f~~~~~~-~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 24 LLLLVQGED-GKETGKLLEKYVEACEN-AILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred CeEEEeCCC-hhHHHHHHHHHHHcCCC-EEEEEccceecceecCCCCeeEEEEEecC
Confidence 445555543 34678999999874332 45677766999999985 5678887644
No 474
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=32.60 E-value=2.9e+02 Score=33.88 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=30.7
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
.+.+.+|.-+.|.|||..+=++...+. .+++-|....++..|..+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~------~~fi~V~~seL~~k~~Ge 260 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETS------ATFLRVVGSELIQKYLGD 260 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC------CCEEEEecchhhhhhcch
Confidence 344679999999999998877765432 366666666665555443
No 475
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=32.52 E-value=2.4e+02 Score=33.16 Aligned_cols=122 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcccccc
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYR 538 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~ 538 (1196)
++.---|.|||-+.-=+..++...+ ..+|+.+--.-..-=.++++-|.-.+.+-+..+ ...-+|...
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~g---~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~--------~~G~DpAaV-- 209 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQG---KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG--------KEGADPAAV-- 209 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHCC---CeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc--------CCCCCcHHH--
Q ss_pred cCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhc---------cccceEEee--cCCCCCCh
Q 000994 539 RDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF---------NCRNRLLLT--GTPIQNNM 607 (1196)
Q Consensus 539 ~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l---------~~~~RllLT--GTPiqN~l 607 (1196)
+......-....+|+|++|=|-|+-| ...+...|..+ .++|.++|+ ||-=||.+
T Consensus 210 --------------afDAi~~Akar~~DvvliDTAGRLhn-k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal 274 (340)
T COG0552 210 --------------AFDAIQAAKARGIDVVLIDTAGRLHN-KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL 274 (340)
T ss_pred --------------HHHHHHHHHHcCCCEEEEeCcccccC-chhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH
Q ss_pred H
Q 000994 608 A 608 (1196)
Q Consensus 608 ~ 608 (1196)
.
T Consensus 275 ~ 275 (340)
T COG0552 275 S 275 (340)
T ss_pred H
No 476
>PRK08939 primosomal protein DnaI; Reviewed
Probab=32.43 E-value=1.1e+02 Score=35.63 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=28.0
Q ss_pred HHHHHHHhhh--cCCCeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 444 GLQWLVNCYE--QGLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 444 gl~wL~~~~~--~~~ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
+..|+.+... .+.|-+|.-.+|.|||..+.|++..+...
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~ 183 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK 183 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4566654322 23455778889999999999999888754
No 477
>KOG3272 consensus Predicted coiled-coil protein [General function prediction only]
Probab=32.43 E-value=43 Score=35.66 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000994 257 RKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQ 303 (1196)
Q Consensus 257 ~r~~re~~~~wk~~e~~~~~~~~~~eke~~~~~k~~~e~~e~~rq~r 303 (1196)
-+--+|-..=--+++||-|+++.|.|....++-++..|+.|.+++-.
T Consensus 133 ~kTkve~~~~d~~~lrEard~~er~e~k~~~~Er~~rekee~l~k~~ 179 (207)
T KOG3272|consen 133 AKTKVERFKPDFAALREARDAKERQEIKKIEQERSKREKEEMLWKEE 179 (207)
T ss_pred hhhhHhhcchhHHHHHHHHhhhhhhhHHHHHHhhhhHHHHHHHhHHH
Confidence 33334443222334455554446666665555444444444444433
No 478
>PHA00350 putative assembly protein
Probab=32.37 E-value=91 Score=37.63 Aligned_cols=15 Identities=40% Similarity=0.445 Sum_probs=12.3
Q ss_pred cEEEECCCccccCcc
Q 000994 566 QYMVLDEAQAIKSSN 580 (1196)
Q Consensus 566 ~~VIlDEAH~iKn~~ 580 (1196)
.+|||||||.+-++.
T Consensus 83 aLIViDEaq~~~p~r 97 (399)
T PHA00350 83 ALYVIDEAQMIFPKR 97 (399)
T ss_pred CEEEEECchhhcCCC
Confidence 489999999986653
No 479
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=31.70 E-value=90 Score=37.16 Aligned_cols=61 Identities=26% Similarity=0.348 Sum_probs=45.2
Q ss_pred cCcHHHHHHHHHHHHhhh--cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHH
Q 000994 436 SLKEYQLKGLQWLVNCYE--QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN 499 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~--~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~ 499 (1196)
+|-+-|...+.++++... .+..-.|--.-|.|||...=++...+... ..++++++|..+..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~---~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR---GKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc---cceEEEecchHHHH
Confidence 366789999998877663 45556888889999999887777766542 25789999976643
No 480
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=31.48 E-value=1.4e+02 Score=36.16 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=18.8
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
.|..+++.-..|.|||..+-.+...+..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 4445666667999999777665555544
No 481
>PRK14873 primosome assembly protein PriA; Provisional
Probab=31.48 E-value=2.2e+02 Score=36.87 Aligned_cols=79 Identities=13% Similarity=0.014 Sum_probs=64.1
Q ss_pred cccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhC-C-CcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1054 DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR-K-YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~r-g-~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
.|||-+...+++.+..+.|..|||-.-=.....-+.+.|..+ | -....+.+..+..+|.+.-..... ++..| ++.|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~-G~~~I-ViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR-GQARV-VVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC-CCCcE-EEEc
Confidence 589999999999999999999999988777777777777644 3 678999999999999888777754 56655 6677
Q ss_pred Ccc
Q 000994 1132 RAG 1134 (1196)
Q Consensus 1132 rAG 1134 (1196)
|++
T Consensus 248 RSA 250 (665)
T PRK14873 248 RSA 250 (665)
T ss_pred cee
Confidence 774
No 482
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=31.47 E-value=63 Score=42.12 Aligned_cols=53 Identities=21% Similarity=0.101 Sum_probs=38.6
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc-CCcEEEEeC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAP 494 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~-~gp~LIV~P 494 (1196)
.|-|-|.++|.+ .....++-.-.|.|||.+.+.-++++....++ ...+|+|+.
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTF 57 (715)
T TIGR01075 4 GLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTF 57 (715)
T ss_pred ccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeec
Confidence 588999999853 23456777789999999999999998865332 234566655
No 483
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=31.44 E-value=86 Score=40.30 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=49.5
Q ss_pred cccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCC
Q 000994 1054 DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSST 1107 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk 1107 (1196)
..||-..+..++..+.+.|.+||+.++-....|-|.+.|...+.+++||-+...
T Consensus 183 GTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~~r 236 (637)
T TIGR00376 183 GTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHPAR 236 (637)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCchh
Confidence 489999999999999999999999999999999999999888999999987665
No 484
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=31.30 E-value=2.7e+02 Score=33.34 Aligned_cols=129 Identities=22% Similarity=0.311 Sum_probs=79.3
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecc------h------------------HHHHHHHHHHHhCCCcEEEEeCCCC-
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQM------T------------------KMLNILEDYMNYRKYRYLRLDGSST- 1107 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~------t------------------~mlDlLee~L~~rg~~y~rLDGStk- 1107 (1196)
..+||-..+..++..+...|.+|+.++-- . ..++.|.+.+...+.+.+.+|.=..
T Consensus 91 pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l 170 (372)
T cd01121 91 PGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVIIDSIQTV 170 (372)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEEcchHHh
Confidence 34899999999998888778888877521 0 1134455556666888888887322
Q ss_pred -----------HHHHHHHHH---HHccCCCceEEEEe--cCcccc-cc-Cc-ccCCEEEEeCCCCCcchHHHHHHhh--h
Q 000994 1108 -----------IMDRRDMVR---DFQHRSDIFVFLLS--TRAGGL-GI-NL-TAADTVIFYESDWNPTLDLQAMDRA--H 1166 (1196)
Q Consensus 1108 -----------~~dR~~~V~---dFq~~~di~VfLLS--TrAGGl-GI-NL-TaAdtVIfyDsdWNPt~d~QAmdRa--h 1166 (1196)
..+-+..+. +|-.+.++-|||++ |+.|.. |- .| +.||+||.++-+=+ ...++=|+ .
T Consensus 171 ~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~~~---~~~R~Lri~Kn 247 (372)
T cd01121 171 YSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRH---SEYRILRSVKN 247 (372)
T ss_pred hccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcCCC---CcEEEEEEEeC
Confidence 123333333 34345678888874 443321 11 23 57999999986522 12222222 4
Q ss_pred ccCCCCcEEEEEeeeCCc
Q 000994 1167 RLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1167 RiGQtK~VtVYRLIt~gT 1184 (1196)
|.|.+.++.+|.+-..|=
T Consensus 248 R~g~~~ei~~F~i~~~Gl 265 (372)
T cd01121 248 RFGSTNELGVFEMRENGL 265 (372)
T ss_pred CCCCCCCEEEEEECCCCe
Confidence 679999999988876663
No 485
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=31.22 E-value=2.4e+02 Score=37.94 Aligned_cols=95 Identities=7% Similarity=0.064 Sum_probs=62.3
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHH----hCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEE
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMN----YRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~----~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfL 1128 (1196)
+.|||-.+....+-.....|.+|+|-+..+....-..+.+. ..+++...|.|.++..++...+..+.. +.+.|++
T Consensus 481 TGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~-g~~dIVI 559 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS-GKIDILI 559 (926)
T ss_pred CCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc-CCceEEE
Confidence 67999975443333333457899999998887666555544 346788889999999999999998875 3455544
Q ss_pred EecCccccccCcccCCEEEE
Q 000994 1129 LSTRAGGLGINLTAADTVIF 1148 (1196)
Q Consensus 1129 LSTrAGGlGINLTaAdtVIf 1148 (1196)
-+.+...-.+.+..-..||+
T Consensus 560 GTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred chHHHhhCCCCcccCCEEEe
Confidence 33322322345555555554
No 486
>PF12846 AAA_10: AAA-like domain
Probab=31.02 E-value=90 Score=35.09 Aligned_cols=61 Identities=16% Similarity=0.059 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHH---HHHHHhCCCcEEEEeCCCCHHHHHHHHHHHc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNIL---EDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQ 1119 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlL---ee~L~~rg~~y~rLDGStk~~dR~~~V~dFq 1119 (1196)
.-...+.+++++.++-|-.+++-+|-..-+.-. ...+..-+..+ -+.....+...+.+.|.
T Consensus 237 ~~~~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i---~~~~~~~~~~~l~~~~g 300 (304)
T PF12846_consen 237 SGAEFLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKI---IFRLEDSDDAELAELFG 300 (304)
T ss_pred chhhhhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEE---EecCChHHHHHHHHHcC
Confidence 344577888999999999999999987665532 34454444332 22333334444666554
No 487
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=30.83 E-value=82 Score=35.50 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=28.3
Q ss_pred HHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 446 QWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 446 ~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
.+|......+.+.+++-++|.|||-+.-+++..+...
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 4455555567778999999999999998888766543
No 488
>PRK13556 azoreductase; Provisional
Probab=30.59 E-value=32 Score=37.39 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=26.4
Q ss_pred cccCCEEEEeCCCCC---cchHHHHHHhhhccCC
Q 000994 1140 LTAADTVIFYESDWN---PTLDLQAMDRAHRLGQ 1170 (1196)
Q Consensus 1140 LTaAdtVIfyDsdWN---Pt~d~QAmdRahRiGQ 1170 (1196)
|.+||.|||.-|-|| |++.-..+||+.|.|-
T Consensus 87 l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~ 120 (208)
T PRK13556 87 FLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGK 120 (208)
T ss_pred HHHCCEEEEeccccccCCcHHHHHHHHHHhcCCc
Confidence 578999999999998 5667778999999863
No 489
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=30.55 E-value=1e+03 Score=28.53 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=34.9
Q ss_pred cCcHHHHHHHHHHHHh-hhc--CCCeEEEeCCCCChHHHHHHHHHHHHHhcc
Q 000994 436 SLKEYQLKGLQWLVNC-YEQ--GLNGILADEMGLGKTIQAMAFLAHLAEEKN 484 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~-~~~--~~ggILADeMGLGKTlqaIall~~l~~~~~ 484 (1196)
.-|+-|+..+.-.+.- +.. ..+.++.-.+|.|||.++--++..+.....
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 4578888877544432 322 235788899999999999888888776543
No 490
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=30.42 E-value=1.3e+02 Score=32.89 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=33.5
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k 507 (1196)
.|...+++-+.|.|||..+..++...... + .+++.|.-.....+..+....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g--~~~~~is~e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD-G--DPVIYVTTEESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc-C--CeEEEEEccCCHHHHHHHHHH
Confidence 34445888999999999999887665443 2 467777765554444444333
No 491
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=30.40 E-value=1.1e+02 Score=35.90 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=31.8
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHH
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~ 480 (1196)
+.+-++|.+-+. .+...+.+.+++-.+|.|||-..-+++..+.
T Consensus 127 g~~~~~~~~~L~---~~v~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 127 KIMTEAQASVIR---SAIDSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCCCHHHHHHHH---HHHHcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 346666665544 4445777889999999999998888877764
No 492
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=30.39 E-value=2.7e+02 Score=40.68 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=38.7
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc-CCcEEEEeCCcc
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAPASV 497 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~-~gp~LIV~P~sl 497 (1196)
..|-+-|..++.-++.. .+.-.++---.|.|||.+..+++..+...... ...++.++|..-
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~ 1079 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHE 1079 (1960)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHH
Confidence 47899999999877632 23345666779999999886544433221111 135677788644
No 493
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.39 E-value=1.3e+02 Score=35.75 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=38.8
Q ss_pred ceEEEEehhhHHhcHhhhhcc---CccEEEECCCccccCccc---HHHHHHHhcc-ccceEEeecC
Q 000994 543 FHILITSYQLLVADEKYFRRV---KWQYMVLDEAQAIKSSNS---IRWKTLLSFN-CRNRLLLTGT 601 (1196)
Q Consensus 543 ~~VvItSYe~l~~d~~~l~~~---~w~~VIlDEAH~iKn~~S---~~~kal~~l~-~~~RllLTGT 601 (1196)
-+|+|-|..++...-..|..+ +....|+|||..+-+... ...+....+. ....++.|+|
T Consensus 208 eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSAT 273 (477)
T KOG0332|consen 208 EQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSAT 273 (477)
T ss_pred hheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeech
Confidence 469999999887765444433 567899999998876542 1223333443 5566777877
No 494
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=30.30 E-value=4.8e+02 Score=29.02 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhchhhHHHHHH
Q 000994 196 KIGKVWVNIVRKDIPKYHKTFFT 218 (1196)
Q Consensus 196 ~~~~~w~~~~~~~~~~~~~~~~~ 218 (1196)
.....|+.|-.|-=+++.++..+
T Consensus 84 d~~t~~r~~eakvraei~~mkVt 106 (265)
T PF06409_consen 84 DLFTLWRHMEAKVRAEIRKMKVT 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888877777777765554
No 495
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.94 E-value=1e+03 Score=28.97 Aligned_cols=133 Identities=12% Similarity=0.065 Sum_probs=0.0
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc----HHHHHHHHHHhCCCCccccccCChhhHHHHhh
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV----LNNWADEISRFCPDLKTLPYWGGLQERMVLRK 529 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl----l~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~ 529 (1196)
.+..-.++-..|.|||-++..+...+.... .++.+|+--.- +.||..-....
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQLk~yae~l--------------------- 260 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQFQGYADKL--------------------- 260 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHHHHHHhhcC---------------------
Q ss_pred ccCcccccccCCCceEEEEehhhHHhcHhhhhc-cCccEEEECCCccccCcccHHHHHHHhc---cccceEEeecCCCCC
Q 000994 530 NINPKRLYRRDAGFHILITSYQLLVADEKYFRR-VKWQYMVLDEAQAIKSSNSIRWKTLLSF---NCRNRLLLTGTPIQN 605 (1196)
Q Consensus 530 ~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~-~~w~~VIlDEAH~iKn~~S~~~kal~~l---~~~~RllLTGTPiqN 605 (1196)
+-+-.+..+...+......+.. -..++||+|=+-+.- ........+..+ ....-++|...+ ..
T Consensus 261 -----------gvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~-~d~~~l~EL~~l~~~~~p~~~~LVLsa-g~ 327 (407)
T PRK12726 261 -----------DVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNY-LAEESVSEISAYTDVVHPDLTCFTFSS-GM 327 (407)
T ss_pred -----------CCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCc-cCHHHHHHHHHHhhccCCceEEEECCC-cc
Q ss_pred ChHHHHHHHHhhCCCCCC
Q 000994 606 NMAELWALLHFIMPTLFD 623 (1196)
Q Consensus 606 ~l~EL~sLL~FL~P~~f~ 623 (1196)
...++..+++....-.++
T Consensus 328 ~~~d~~~i~~~f~~l~i~ 345 (407)
T PRK12726 328 KSADVMTILPKLAEIPID 345 (407)
T ss_pred cHHHHHHHHHhcCcCCCC
No 496
>PRK05636 replicative DNA helicase; Provisional
Probab=29.85 E-value=2.7e+02 Score=34.87 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=34.8
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei 505 (1196)
.|.=.|||--+|.|||.-++.++......++ .+++++..--...++..-+
T Consensus 264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~~g--~~v~~fSlEMs~~ql~~R~ 313 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLALDFMRSASIKHN--KASVIFSLEMSKSEIVMRL 313 (505)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEeeCCHHHHHHHH
Confidence 3334589999999999999988876654332 4888887755555554443
No 497
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=29.42 E-value=1.1e+02 Score=36.60 Aligned_cols=59 Identities=27% Similarity=0.377 Sum_probs=37.0
Q ss_pred chhhccCcHHHHHHHHHHHHhhhc----CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 431 ELFKGSLKEYQLKGLQWLVNCYEQ----GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 431 ~~l~~~LrpyQl~gl~wL~~~~~~----~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
.+|.+++.. +++..-++++..+ |.+-+||..+|.|||..|+++...|-.. -||..++-.
T Consensus 24 ~GlVGQ~~A--ReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~----~PF~~isgS 86 (398)
T PF06068_consen 24 DGLVGQEKA--REAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGED----VPFVSISGS 86 (398)
T ss_dssp TTEES-HHH--HHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTT----S-EEEEEGG
T ss_pred ccccChHHH--HHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCC----CCeeEcccc
Confidence 355555544 4444446666654 3455899999999999999888777533 477776654
No 498
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=29.30 E-value=7.6e+02 Score=29.99 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcc
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPK 534 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~ 534 (1196)
++--.|.-.+|.|||-+..=+.+........ ..+=||+--+=---=...++.|+. .+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~-------------------im--- 259 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYAD-------------------IM--- 259 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHH-------------------Hh---
Confidence 4455788899999997654444443312222 344455432221112223333220 00
Q ss_pred cccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCcc-ccCcc-cHHHHHHHhc--cccceEEeecCCCCCChHHH
Q 000994 535 RLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQA-IKSSN-SIRWKTLLSF--NCRNRLLLTGTPIQNNMAEL 610 (1196)
Q Consensus 535 ~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~-iKn~~-S~~~kal~~l--~~~~RllLTGTPiqN~l~EL 610 (1196)
..++ .++.+..-+......+... ++|.+|=+-+ -++.. ....+++... ....-|.|++|-=.+.+.|+
T Consensus 260 -----~vp~-~vv~~~~el~~ai~~l~~~--d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei 331 (407)
T COG1419 260 -----GVPL-EVVYSPKELAEAIEALRDC--DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI 331 (407)
T ss_pred -----CCce-EEecCHHHHHHHHHHhhcC--CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH
Confidence 0122 3444555555555555544 8999996543 23321 1122333322 45567999999988999999
Q ss_pred HHHHHhhCCC
Q 000994 611 WALLHFIMPT 620 (1196)
Q Consensus 611 ~sLL~FL~P~ 620 (1196)
+..+.++...
T Consensus 332 ~~~f~~~~i~ 341 (407)
T COG1419 332 IKQFSLFPID 341 (407)
T ss_pred HHHhccCCcc
Confidence 9888877554
No 499
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=29.07 E-value=66 Score=41.25 Aligned_cols=68 Identities=19% Similarity=0.138 Sum_probs=50.2
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhc---ccCCcEEEEeC-CccHHHHHHHHHH
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEK---NIWGPFLVVAP-ASVLNNWADEISR 507 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~---~~~gp~LIV~P-~sll~nW~~Ei~k 507 (1196)
.|..-|..+.+.+... .-.|+--.+|+|||.+++-.+..+.... ...-|+||||= .+.+.|...-+..
T Consensus 378 ildsSq~~A~qs~lty----elsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTY----ELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eecHHHHHHHHHHhhh----hhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 6777899999888742 2346677899999999887777776543 23469999996 5678887766654
No 500
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=28.83 E-value=1.2e+03 Score=30.25 Aligned_cols=34 Identities=29% Similarity=0.229 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000994 253 AIRTRKLARDMLLFWKRVDKEMAEVRKREEREAA 286 (1196)
Q Consensus 253 ~~~~~r~~re~~~~wk~~e~~~~~~~~~~eke~~ 286 (1196)
+.|-+++--+|-.=-||-|-||++.|+.+||.++
T Consensus 923 ~er~rk~qE~~E~ER~rrEaeek~rre~ee~k~~ 956 (1259)
T KOG0163|consen 923 LERLRKIQELAEAERKRREAEEKRRREEEEKKRA 956 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4455666666666666766666665555554443
Done!