Query 000994
Match_columns 1196
No_of_seqs 455 out of 2549
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:24:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 3.7E-80 1.3E-84 790.6 35.9 462 429-1193 228-694 (800)
2 1z3i_X Similar to RAD54-like; 100.0 1.2E-77 4.2E-82 749.9 38.9 474 427-1193 46-538 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 4E-71 1.4E-75 671.5 41.8 430 430-1193 31-463 (500)
4 3dmq_A RNA polymerase-associat 100.0 2.1E-47 7E-52 495.8 30.5 425 434-1193 151-625 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 5E-42 1.7E-46 408.9 32.0 137 1053-1194 340-486 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 2E-42 6.7E-47 387.6 21.8 140 1054-1193 94-234 (271)
7 3hgt_A HDA1 complex subunit 3; 100.0 3.4E-40 1.2E-44 370.9 19.3 132 1053-1191 106-245 (328)
8 2fwr_A DNA repair protein RAD2 100.0 1.2E-37 4E-42 375.1 16.9 132 1054-1194 333-465 (472)
9 4a2p_A RIG-I, retinoic acid in 100.0 2E-33 6.8E-38 343.5 33.3 131 1054-1189 370-514 (556)
10 4a2w_A RIG-I, retinoic acid in 100.0 1E-33 3.5E-38 366.9 29.8 132 1054-1190 611-756 (936)
11 4a2q_A RIG-I, retinoic acid in 100.0 1.7E-33 5.7E-38 360.3 30.6 130 1054-1188 611-754 (797)
12 3tbk_A RIG-I helicase domain; 100.0 1.6E-32 5.4E-37 334.9 33.4 131 1054-1189 369-513 (555)
13 2oca_A DAR protein, ATP-depend 100.0 1.1E-30 3.9E-35 317.2 26.3 133 1057-1192 332-467 (510)
14 2ykg_A Probable ATP-dependent 100.0 4.9E-31 1.7E-35 332.4 20.3 129 1054-1187 378-520 (696)
15 4gl2_A Interferon-induced heli 100.0 8.5E-29 2.9E-33 312.0 23.5 124 1055-1184 380-520 (699)
16 3h1t_A Type I site-specific re 99.9 4.9E-27 1.7E-31 290.7 25.8 161 434-613 176-352 (590)
17 1xti_A Probable ATP-dependent 99.9 1.2E-25 4E-30 262.4 30.3 124 1055-1184 235-358 (391)
18 1s2m_A Putative ATP-dependent 99.9 7.5E-25 2.6E-29 256.8 27.5 124 1055-1184 243-366 (400)
19 1hv8_A Putative ATP-dependent 99.9 1.1E-24 3.8E-29 251.1 27.1 123 1056-1185 225-347 (367)
20 2j0s_A ATP-dependent RNA helic 99.9 5.3E-24 1.8E-28 250.6 27.4 123 1056-1184 262-384 (410)
21 2z0m_A 337AA long hypothetical 99.9 2.2E-24 7.4E-29 246.0 22.8 117 1071-1194 219-335 (337)
22 3eiq_A Eukaryotic initiation f 99.9 5E-24 1.7E-28 250.5 22.1 125 1056-1186 266-390 (414)
23 3pey_A ATP-dependent RNA helic 99.9 3.8E-23 1.3E-27 240.7 25.7 122 1056-1183 229-356 (395)
24 1fuu_A Yeast initiation factor 99.9 1.6E-24 5.4E-29 252.8 13.1 109 1072-1184 259-367 (394)
25 2db3_A ATP-dependent RNA helic 99.9 3.7E-21 1.3E-25 229.3 32.1 121 1055-1182 286-406 (434)
26 2i4i_A ATP-dependent RNA helic 99.9 1.5E-21 5.2E-26 229.7 28.1 125 1055-1184 260-384 (417)
27 3fht_A ATP-dependent RNA helic 99.9 8E-21 2.7E-25 222.8 28.7 123 1055-1183 251-379 (412)
28 3oiy_A Reverse gyrase helicase 99.9 1.6E-20 5.3E-25 221.9 29.5 115 1057-1181 240-363 (414)
29 1oyw_A RECQ helicase, ATP-depe 99.9 1.4E-20 4.8E-25 229.6 26.2 116 1057-1176 223-338 (523)
30 2eyq_A TRCF, transcription-rep 99.8 2.1E-20 7.2E-25 246.1 25.0 117 1062-1183 803-922 (1151)
31 2v1x_A ATP-dependent DNA helic 99.8 2.6E-19 8.8E-24 221.1 26.8 105 1071-1177 266-370 (591)
32 3fho_A ATP-dependent RNA helic 99.8 1.9E-20 6.6E-25 227.6 14.1 120 1056-1181 343-468 (508)
33 3sqw_A ATP-dependent RNA helic 99.8 7.9E-19 2.7E-23 216.8 28.6 121 1059-1183 273-398 (579)
34 2xgj_A ATP-dependent RNA helic 99.8 1.1E-18 3.9E-23 226.6 28.3 122 1061-1184 331-500 (1010)
35 3i5x_A ATP-dependent RNA helic 99.8 3.7E-18 1.3E-22 209.7 30.9 111 1070-1184 337-450 (563)
36 3fmp_B ATP-dependent RNA helic 99.8 1.3E-19 4.5E-24 218.3 11.5 108 1072-1183 333-446 (479)
37 1gm5_A RECG; helicase, replica 99.8 7.1E-19 2.4E-23 222.2 15.9 154 436-605 368-529 (780)
38 2p6r_A Afuhel308 helicase; pro 99.7 3.6E-17 1.2E-21 206.4 24.3 117 1070-1188 240-393 (702)
39 2va8_A SSO2462, SKI2-type heli 99.7 2.1E-16 7.3E-21 199.8 29.8 116 1070-1187 250-413 (715)
40 4a4z_A Antiviral helicase SKI2 99.7 1.9E-16 6.6E-21 205.7 29.8 130 1056-1190 322-499 (997)
41 3l9o_A ATP-dependent RNA helic 99.7 6.8E-17 2.3E-21 211.8 24.9 123 1061-1185 429-599 (1108)
42 2zj8_A DNA helicase, putative 99.7 5.3E-17 1.8E-21 205.5 22.9 116 1070-1187 235-391 (720)
43 1rif_A DAR protein, DNA helica 99.7 1E-17 3.6E-22 187.9 12.3 163 435-619 112-278 (282)
44 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 3.7E-15 1.3E-19 193.0 29.7 156 435-605 270-441 (1038)
45 2hjv_A ATP-dependent RNA helic 99.6 9.3E-16 3.2E-20 158.1 14.4 127 1052-1184 17-143 (163)
46 1t5i_A C_terminal domain of A 99.6 1.1E-15 3.7E-20 159.2 15.0 126 1052-1183 13-138 (172)
47 2fz4_A DNA repair protein RAD2 99.6 9.5E-16 3.2E-20 168.0 14.5 141 434-607 91-233 (237)
48 2jgn_A DBX, DDX3, ATP-dependen 99.6 7.8E-16 2.7E-20 162.3 11.7 128 1052-1184 27-154 (185)
49 4ddu_A Reverse gyrase; topoiso 99.6 2.2E-14 7.4E-19 188.1 27.1 129 436-578 78-210 (1104)
50 1fuk_A Eukaryotic initiation f 99.6 3.2E-15 1.1E-19 154.3 13.6 126 1055-1186 14-140 (165)
51 2p6n_A ATP-dependent RNA helic 99.6 2.4E-15 8.2E-20 159.4 11.5 124 1053-1183 38-161 (191)
52 2rb4_A ATP-dependent RNA helic 99.5 2.7E-14 9.1E-19 148.8 13.1 126 1055-1186 19-150 (175)
53 1gku_B Reverse gyrase, TOP-RG; 99.5 1.6E-13 5.6E-18 179.7 20.8 126 436-580 57-191 (1054)
54 2yjt_D ATP-dependent RNA helic 99.3 1.1E-15 3.9E-20 158.5 0.0 123 1055-1183 15-137 (170)
55 3b6e_A Interferon-induced heli 99.5 4.6E-14 1.6E-18 150.4 10.2 133 434-579 31-177 (216)
56 1t6n_A Probable ATP-dependent 99.5 1.8E-13 6.1E-18 147.2 14.0 162 436-610 36-207 (220)
57 2gxq_A Heat resistant RNA depe 99.5 2E-13 6.7E-18 145.0 14.0 160 436-609 23-191 (207)
58 3eaq_A Heat resistant RNA depe 99.5 2.4E-13 8.3E-18 146.3 14.7 126 1053-1184 14-139 (212)
59 2oxc_A Probable ATP-dependent 99.4 1.2E-12 4.2E-17 142.0 14.8 152 436-602 46-208 (230)
60 1vec_A ATP-dependent RNA helic 99.4 1.4E-12 4.6E-17 138.6 14.4 155 436-603 25-188 (206)
61 2pl3_A Probable ATP-dependent 99.4 1.7E-12 5.8E-17 141.2 15.5 154 436-603 47-213 (236)
62 1q0u_A Bstdead; DEAD protein, 99.4 8.9E-13 3.1E-17 141.8 12.1 161 436-610 26-198 (219)
63 3ber_A Probable ATP-dependent 99.4 2.4E-12 8.2E-17 141.8 13.8 155 436-603 65-228 (249)
64 2v6i_A RNA helicase; membrane, 99.4 3.6E-12 1.2E-16 151.7 16.1 99 1072-1177 171-287 (431)
65 3i32_A Heat resistant RNA depe 99.4 3.4E-12 1.1E-16 144.6 14.9 127 1052-1184 10-136 (300)
66 1qde_A EIF4A, translation init 99.4 3.6E-12 1.2E-16 137.2 14.1 153 436-603 36-197 (224)
67 3bor_A Human initiation factor 99.3 3.9E-12 1.3E-16 138.8 11.8 156 436-603 52-215 (237)
68 1wrb_A DJVLGB; RNA helicase, D 99.3 7.1E-12 2.4E-16 137.8 13.8 155 436-603 45-220 (253)
69 1yks_A Genome polyprotein [con 99.3 5E-12 1.7E-16 150.9 13.2 102 1071-1180 176-296 (440)
70 2z83_A Helicase/nucleoside tri 99.3 1.2E-11 4E-16 148.5 13.5 104 1072-1183 190-313 (459)
71 2jlq_A Serine protease subunit 99.3 1E-11 3.4E-16 148.7 11.6 93 1072-1171 188-300 (451)
72 1tf5_A Preprotein translocase 99.2 9.2E-10 3.1E-14 137.5 28.5 118 1053-1174 413-538 (844)
73 2wv9_A Flavivirin protease NS2 99.2 3.4E-11 1.2E-15 150.4 15.1 101 1071-1180 409-530 (673)
74 3dkp_A Probable ATP-dependent 99.2 5.1E-11 1.7E-15 130.2 14.4 155 436-602 51-220 (245)
75 3rc3_A ATP-dependent RNA helic 99.2 5.7E-11 1.9E-15 148.1 16.4 106 1076-1183 324-445 (677)
76 4f92_B U5 small nuclear ribonu 99.2 1.2E-09 4E-14 148.7 29.3 150 436-602 926-1093(1724)
77 2xau_A PRE-mRNA-splicing facto 99.2 2.8E-10 9.6E-15 144.5 21.7 115 1071-1189 302-449 (773)
78 2whx_A Serine protease/ntpase/ 99.2 1.4E-10 4.9E-15 143.7 16.7 103 1071-1181 354-476 (618)
79 3iuy_A Probable ATP-dependent 99.2 7.9E-11 2.7E-15 127.3 12.6 154 436-602 42-208 (228)
80 1nkt_A Preprotein translocase 99.2 1.8E-08 6E-13 126.0 33.1 120 1053-1176 441-612 (922)
81 2fsf_A Preprotein translocase 99.1 1.7E-09 5.9E-14 134.8 22.1 120 1053-1176 422-578 (853)
82 3ly5_A ATP-dependent RNA helic 99.1 3.8E-10 1.3E-14 125.1 12.9 155 436-603 76-243 (262)
83 3fe2_A Probable ATP-dependent 99.1 4.7E-10 1.6E-14 122.5 13.1 154 436-602 51-217 (242)
84 4f92_B U5 small nuclear ribonu 99.1 6.9E-09 2.4E-13 141.2 26.5 88 1096-1185 378-475 (1724)
85 3o8b_A HCV NS3 protease/helica 99.1 1.1E-09 3.8E-14 135.3 16.0 99 1072-1184 396-515 (666)
86 3jux_A Protein translocase sub 99.0 5.3E-08 1.8E-12 119.4 30.2 121 1052-1176 454-582 (822)
87 3fmo_B ATP-dependent RNA helic 98.8 7E-09 2.4E-13 117.4 10.5 153 436-603 114-278 (300)
88 1c4o_A DNA nucleotide excision 98.8 2.4E-08 8.4E-13 124.8 14.1 126 1055-1185 422-552 (664)
89 2d7d_A Uvrabc system protein B 98.7 6.1E-08 2.1E-12 121.2 14.4 126 1055-1185 428-558 (661)
90 3crv_A XPD/RAD3 related DNA he 98.3 2.1E-06 7.2E-11 105.2 12.6 135 436-578 3-187 (551)
91 3llm_A ATP-dependent RNA helic 98.2 1E-05 3.4E-10 87.9 13.7 153 436-604 61-220 (235)
92 2vl7_A XPD; helicase, unknown 98.2 3.7E-06 1.3E-10 102.7 11.3 112 1059-1176 370-516 (540)
93 4a15_A XPD helicase, ATP-depen 97.7 0.00012 4E-09 90.9 12.0 82 436-519 3-87 (620)
94 2ipc_A Preprotein translocase 97.3 0.0013 4.3E-08 82.8 13.8 145 436-614 79-239 (997)
95 4b3f_X DNA-binding protein smu 97.2 0.0021 7.1E-08 80.2 14.2 73 431-509 184-257 (646)
96 2gk6_A Regulator of nonsense t 96.6 0.013 4.4E-07 72.7 13.9 156 435-604 179-375 (624)
97 3e1s_A Exodeoxyribonuclease V, 96.3 0.014 4.7E-07 71.6 11.9 132 434-605 187-318 (574)
98 3upu_A ATP-dependent DNA helic 96.3 0.023 7.9E-07 67.7 13.5 142 435-605 24-167 (459)
99 2xzl_A ATP-dependent helicase 96.3 0.023 7.8E-07 72.4 13.9 155 435-604 359-553 (802)
100 2wjy_A Regulator of nonsense t 96.0 0.029 9.8E-07 71.4 12.9 156 435-604 355-551 (800)
101 2o0j_A Terminase, DNA packagin 95.6 0.098 3.3E-06 60.8 14.1 155 435-615 162-324 (385)
102 1w36_D RECD, exodeoxyribonucle 95.1 0.053 1.8E-06 67.0 10.4 149 438-607 151-303 (608)
103 2orw_A Thymidine kinase; TMTK, 95.0 0.058 2E-06 56.1 8.8 35 458-495 6-40 (184)
104 3cpe_A Terminase, DNA packagin 94.9 0.14 4.6E-06 63.1 13.3 151 435-605 162-316 (592)
105 2b8t_A Thymidine kinase; deoxy 93.5 0.19 6.7E-06 53.9 9.2 45 448-495 5-49 (223)
106 3lfu_A DNA helicase II; SF1 he 92.9 0.72 2.5E-05 56.9 14.5 69 434-508 7-77 (647)
107 2vl7_A XPD; helicase, unknown 92.8 0.22 7.6E-06 60.5 9.3 133 436-576 7-187 (540)
108 1c4o_A DNA nucleotide excision 92.7 0.2 6.9E-06 62.4 8.9 76 436-517 8-85 (664)
109 2j9r_A Thymidine kinase; TK1, 92.2 0.4 1.4E-05 51.1 9.1 35 459-496 32-66 (214)
110 3vkw_A Replicase large subunit 91.9 0.18 6E-06 59.5 6.5 107 458-604 164-271 (446)
111 1xx6_A Thymidine kinase; NESG, 91.7 0.44 1.5E-05 49.8 8.7 35 458-495 11-45 (191)
112 2d7d_A Uvrabc system protein B 90.9 0.37 1.3E-05 60.0 8.4 76 436-517 12-89 (661)
113 3syl_A Protein CBBX; photosynt 90.5 0.58 2E-05 51.8 8.8 39 457-495 69-108 (309)
114 1a5t_A Delta prime, HOLB; zinc 90.4 1.4 4.7E-05 49.9 11.9 46 437-482 3-51 (334)
115 1l8q_A Chromosomal replication 87.9 2.2 7.7E-05 47.6 11.3 47 455-504 37-83 (324)
116 2orv_A Thymidine kinase; TP4A 87.4 1.6 5.6E-05 46.9 9.0 34 459-495 23-56 (234)
117 3bos_A Putative DNA replicatio 86.8 2.8 9.6E-05 43.8 10.6 40 443-482 38-79 (242)
118 1njg_A DNA polymerase III subu 85.7 5.7 0.00019 41.0 12.3 43 438-480 28-70 (250)
119 2p65_A Hypothetical protein PF 85.7 3.7 0.00013 40.9 10.4 27 455-481 43-69 (187)
120 3uk6_A RUVB-like 2; hexameric 85.7 3.1 0.00011 47.1 11.0 55 437-495 48-106 (368)
121 3u61_B DNA polymerase accessor 85.7 3 0.0001 46.5 10.6 42 564-605 105-148 (324)
122 2chg_A Replication factor C sm 85.4 7.5 0.00026 39.6 12.9 25 457-481 40-64 (226)
123 1sxj_D Activator 1 41 kDa subu 84.5 1.1 3.9E-05 50.3 6.5 40 456-495 59-98 (353)
124 2ipc_A Preprotein translocase 84.5 2.5 8.7E-05 53.6 9.9 121 1053-1177 424-694 (997)
125 1jbk_A CLPB protein; beta barr 84.2 5.6 0.00019 39.5 11.0 26 456-481 44-69 (195)
126 1iqp_A RFCS; clamp loader, ext 83.8 6.5 0.00022 43.2 12.3 24 457-480 48-71 (327)
127 3e2i_A Thymidine kinase; Zn-bi 83.7 2.8 9.7E-05 44.6 8.6 35 459-496 32-66 (219)
128 1w4r_A Thymidine kinase; type 83.4 3.1 0.00011 43.5 8.7 34 459-495 24-57 (195)
129 3eie_A Vacuolar protein sortin 82.8 1.7 5.9E-05 48.7 7.0 36 456-497 52-87 (322)
130 3h4m_A Proteasome-activating n 82.5 1.6 5.4E-05 47.7 6.5 36 454-495 50-85 (285)
131 4b4t_J 26S protease regulatory 82.3 3.1 0.00011 48.4 9.0 47 454-506 181-227 (405)
132 2qby_B CDC6 homolog 3, cell di 81.8 4 0.00014 46.3 9.7 45 438-482 25-72 (384)
133 2gno_A DNA polymerase III, gam 80.9 5.3 0.00018 44.6 10.1 38 441-478 2-41 (305)
134 3ec2_A DNA replication protein 80.3 5.3 0.00018 40.3 9.1 43 439-481 17-64 (180)
135 2qp9_X Vacuolar protein sortin 79.0 2.1 7.1E-05 48.9 6.1 34 456-495 85-118 (355)
136 3vfd_A Spastin; ATPase, microt 78.9 9.6 0.00033 43.8 11.8 42 455-502 148-189 (389)
137 3n70_A Transport activator; si 78.7 2.3 7.9E-05 41.7 5.5 26 452-477 21-46 (145)
138 2z4s_A Chromosomal replication 75.9 7.6 0.00026 45.6 9.9 41 456-497 131-171 (440)
139 2qz4_A Paraplegin; AAA+, SPG7, 75.3 9 0.00031 40.8 9.6 35 456-496 40-74 (262)
140 2bjv_A PSP operon transcriptio 75.1 9.8 0.00033 40.9 9.8 42 452-496 26-67 (265)
141 2v1u_A Cell division control p 74.6 6.9 0.00024 44.1 8.8 44 438-481 24-70 (387)
142 1xwi_A SKD1 protein; VPS4B, AA 74.3 3.2 0.00011 46.6 5.8 37 456-497 46-82 (322)
143 1jr3_A DNA polymerase III subu 73.7 17 0.00059 40.8 11.9 44 438-481 21-64 (373)
144 1sxj_B Activator 1 37 kDa subu 72.9 8.3 0.00028 42.3 8.8 25 457-481 44-68 (323)
145 2zan_A Vacuolar protein sortin 70.6 5.4 0.00018 47.0 6.8 42 456-502 168-209 (444)
146 1fnn_A CDC6P, cell division co 70.5 28 0.00097 39.1 12.8 43 438-480 22-69 (389)
147 3cf0_A Transitional endoplasmi 70.4 6.7 0.00023 43.4 7.2 40 454-499 48-87 (301)
148 2r6a_A DNAB helicase, replicat 70.2 21 0.00071 42.0 11.8 59 444-504 192-250 (454)
149 2q6t_A DNAB replication FORK h 67.6 18 0.00063 42.3 10.6 59 445-505 190-248 (444)
150 4dzz_A Plasmid partitioning pr 67.6 30 0.001 35.0 11.2 111 462-617 9-121 (206)
151 4b4t_H 26S protease regulatory 67.4 9.6 0.00033 45.1 7.9 45 454-504 242-286 (467)
152 3co5_A Putative two-component 67.4 4.8 0.00016 39.3 4.6 23 453-475 25-47 (143)
153 3te6_A Regulatory protein SIR3 65.9 47 0.0016 37.2 12.9 45 438-482 25-72 (318)
154 1ojl_A Transcriptional regulat 65.5 16 0.00056 40.4 9.1 42 453-497 23-64 (304)
155 1sxj_A Activator 1 95 kDa subu 65.2 23 0.00079 42.3 11.0 24 456-479 78-101 (516)
156 2qby_A CDC6 homolog 1, cell di 65.2 20 0.00069 40.1 10.0 45 438-482 25-72 (386)
157 3t15_A Ribulose bisphosphate c 64.5 7.9 0.00027 42.7 6.2 35 457-497 38-72 (293)
158 3hu3_A Transitional endoplasmi 61.7 11 0.00037 45.0 7.1 35 454-494 237-271 (489)
159 3k1j_A LON protease, ATP-depen 61.4 18 0.00062 44.2 9.2 58 445-502 50-118 (604)
160 4b4t_M 26S protease regulatory 60.9 5.8 0.0002 46.6 4.4 44 455-504 215-258 (434)
161 4b4t_I 26S protease regulatory 60.4 11 0.00036 44.3 6.4 45 455-505 216-260 (437)
162 3b9p_A CG5977-PA, isoform A; A 60.0 13 0.00045 40.5 7.0 25 455-479 54-78 (297)
163 3d8b_A Fidgetin-like protein 1 60.0 7.6 0.00026 44.2 5.1 37 455-497 117-153 (357)
164 2w0m_A SSO2452; RECA, SSPF, un 59.4 60 0.002 33.2 11.7 50 454-506 22-71 (235)
165 1sxj_C Activator 1 40 kDa subu 58.3 27 0.00094 38.9 9.4 38 443-480 32-71 (340)
166 4b4t_L 26S protease subunit RP 57.2 8.5 0.00029 45.2 5.0 44 455-504 215-258 (437)
167 2chq_A Replication factor C sm 56.1 5.8 0.0002 43.5 3.2 24 457-480 40-63 (319)
168 1d2n_A N-ethylmaleimide-sensit 55.5 35 0.0012 36.6 9.4 22 457-478 66-87 (272)
169 4b4t_K 26S protease regulatory 55.2 11 0.00038 44.1 5.5 44 455-504 206-249 (428)
170 2zts_A Putative uncharacterize 55.1 14 0.00049 38.7 6.0 53 454-508 29-81 (251)
171 2zpa_A Uncharacterized protein 54.3 36 0.0012 42.0 10.0 54 435-496 174-227 (671)
172 1xp8_A RECA protein, recombina 53.2 32 0.0011 39.3 8.9 56 444-502 61-118 (366)
173 4fcw_A Chaperone protein CLPB; 52.7 44 0.0015 36.3 9.7 35 457-494 49-83 (311)
174 2dr3_A UPF0273 protein PH0284; 52.1 59 0.002 33.8 10.3 51 454-507 22-72 (247)
175 2qen_A Walker-type ATPase; unk 52.0 32 0.0011 37.8 8.6 37 438-477 17-53 (350)
176 1gm5_A RECG; helicase, replica 51.9 42 0.0014 42.4 10.3 98 1053-1151 398-499 (780)
177 2cvh_A DNA repair and recombin 51.2 57 0.0019 33.3 9.8 55 444-504 8-65 (220)
178 2zr9_A Protein RECA, recombina 50.5 36 0.0012 38.5 8.7 55 444-501 48-104 (349)
179 3pvs_A Replication-associated 50.4 27 0.00094 41.0 7.9 23 457-479 52-74 (447)
180 4a15_A XPD helicase, ATP-depen 50.0 35 0.0012 41.8 9.1 112 1059-1176 434-579 (620)
181 3bh0_A DNAB-like replicative h 49.8 66 0.0023 35.6 10.6 59 445-506 58-116 (315)
182 1qvr_A CLPB protein; coiled co 48.4 52 0.0018 41.9 10.6 27 455-481 191-217 (854)
183 3hjh_A Transcription-repair-co 48.3 29 0.001 41.2 7.7 49 458-512 17-66 (483)
184 1sxj_E Activator 1 40 kDa subu 48.3 53 0.0018 36.4 9.7 40 441-480 19-61 (354)
185 3rk3_E Complexin-1; snare prot 47.6 39 0.0013 27.9 5.8 36 270-305 13-48 (63)
186 2fna_A Conserved hypothetical 47.3 77 0.0026 34.7 10.8 37 438-479 18-54 (357)
187 2w58_A DNAI, primosome compone 47.3 32 0.0011 35.0 7.0 34 456-492 55-88 (202)
188 1w5s_A Origin recognition comp 45.7 38 0.0013 38.4 8.0 44 438-481 27-78 (412)
189 1r6b_X CLPA protein; AAA+, N-t 45.5 95 0.0033 38.7 12.3 28 454-481 206-233 (758)
190 3fkq_A NTRC-like two-domain pr 45.0 61 0.0021 36.8 9.6 33 458-493 147-179 (373)
191 2ce7_A Cell division protein F 44.6 64 0.0022 38.2 9.8 34 456-495 50-83 (476)
192 1uaa_A REP helicase, protein ( 43.3 29 0.00098 42.9 6.9 68 436-509 2-71 (673)
193 3oiy_A Reverse gyrase helicase 42.6 82 0.0028 35.8 10.3 96 1052-1148 44-145 (414)
194 3cf2_A TER ATPase, transitiona 42.3 18 0.00061 45.8 4.8 42 455-502 511-552 (806)
195 3sxu_A DNA polymerase III subu 41.5 1.3E+02 0.0043 29.9 9.9 41 1055-1095 22-62 (150)
196 3dm5_A SRP54, signal recogniti 39.5 80 0.0027 37.0 9.4 33 458-493 103-135 (443)
197 1kil_E Complexin I snare-compl 39.0 58 0.002 25.8 5.3 33 271-303 11-43 (49)
198 2kjq_A DNAA-related protein; s 38.6 35 0.0012 33.4 5.4 27 454-480 35-61 (149)
199 1pjr_A PCRA; DNA repair, DNA r 36.3 51 0.0017 41.1 7.6 57 434-496 9-66 (724)
200 3kl4_A SRP54, signal recogniti 36.0 1.5E+02 0.0052 34.5 11.1 32 459-493 101-132 (433)
201 1u6t_A SH3 domain-binding glut 35.6 43 0.0015 32.1 5.2 45 1075-1119 2-53 (121)
202 3nhm_A Response regulator; pro 34.8 1.3E+02 0.0043 27.4 8.5 97 1067-1169 22-123 (133)
203 2xxa_A Signal recognition part 34.5 1.2E+02 0.0039 35.5 9.8 85 1053-1139 109-198 (433)
204 3h5i_A Response regulator/sens 32.5 1.9E+02 0.0067 26.6 9.6 96 1070-1168 27-124 (140)
205 3dm5_A SRP54, signal recogniti 32.4 1.8E+02 0.006 34.1 10.8 78 1053-1131 109-190 (443)
206 3ipz_A Monothiol glutaredoxin- 31.3 1.1E+02 0.0038 28.1 7.3 53 1063-1116 9-67 (109)
207 2qgz_A Helicase loader, putati 30.7 69 0.0024 35.4 6.8 26 455-480 152-177 (308)
208 2c9o_A RUVB-like 1; hexameric 29.7 37 0.0013 39.8 4.5 60 438-501 42-105 (456)
209 3i42_A Response regulator rece 29.6 84 0.0029 28.5 6.2 95 1070-1170 25-124 (127)
210 3zyw_A Glutaredoxin-3; metal b 29.5 1.3E+02 0.0044 27.8 7.4 53 1063-1116 7-65 (111)
211 2j48_A Two-component sensor ki 29.2 99 0.0034 27.1 6.5 89 1070-1166 23-116 (119)
212 3a10_A Response regulator; pho 28.6 2.2E+02 0.0076 25.0 8.9 90 1070-1166 23-115 (116)
213 3bgw_A DNAB-like replicative h 28.3 71 0.0024 37.4 6.6 58 444-504 186-243 (444)
214 2rdm_A Response regulator rece 26.5 2E+02 0.0067 26.0 8.3 96 1070-1171 27-126 (132)
215 3gx8_A Monothiol glutaredoxin- 26.4 1.7E+02 0.0059 27.5 7.8 53 1064-1117 8-69 (121)
216 1zu4_A FTSY; GTPase, signal re 25.9 1.8E+02 0.0063 32.2 9.2 32 459-493 109-140 (320)
217 3u4q_A ATP-dependent helicase/ 25.8 65 0.0022 42.9 6.3 57 433-495 7-66 (1232)
218 2z43_A DNA repair and recombin 25.7 1.9E+02 0.0064 32.0 9.2 45 453-497 105-152 (324)
219 2r2a_A Uncharacterized protein 25.2 33 0.0011 35.6 2.7 22 458-479 8-29 (199)
220 4a1f_A DNAB helicase, replicat 25.2 1.2E+02 0.0042 34.1 7.5 58 444-504 35-92 (338)
221 3hr8_A Protein RECA; alpha and 24.9 1.2E+02 0.004 34.5 7.4 40 458-500 64-103 (356)
222 3g5j_A Putative ATP/GTP bindin 24.8 98 0.0033 28.9 5.8 52 1056-1107 73-125 (134)
223 3cmu_A Protein RECA, recombina 24.5 1.1E+02 0.0039 42.5 8.2 56 444-502 719-776 (2050)
224 3crv_A XPD/RAD3 related DNA he 24.5 2.5E+02 0.0085 33.5 10.7 88 1058-1153 378-473 (551)
225 1qvr_A CLPB protein; coiled co 23.7 2.8E+02 0.0095 35.1 11.4 33 457-492 590-622 (854)
226 2yan_A Glutaredoxin-3; oxidore 23.6 2.6E+02 0.0087 25.1 8.2 64 1063-1128 8-77 (105)
227 2eyq_A TRCF, transcription-rep 23.5 1.9E+02 0.0066 38.1 10.0 95 1053-1148 633-731 (1151)
228 2px0_A Flagellar biosynthesis 23.4 2.1E+02 0.0073 31.2 9.0 34 458-493 108-141 (296)
229 3u4q_B ATP-dependent helicase/ 22.9 84 0.0029 41.5 6.5 50 459-509 6-55 (1166)
230 4b3f_X DNA-binding protein smu 22.8 1E+02 0.0035 37.7 6.9 51 1055-1105 216-266 (646)
231 2wem_A Glutaredoxin-related pr 22.4 1.6E+02 0.0056 27.6 6.8 45 1072-1116 19-70 (118)
232 3cf2_A TER ATPase, transitiona 22.2 59 0.002 41.1 4.6 43 456-504 239-281 (806)
233 1wp9_A ATP-dependent RNA helic 22.1 2.3E+02 0.0078 32.0 9.4 109 1053-1167 32-152 (494)
234 4ddu_A Reverse gyrase; topoiso 21.8 2.1E+02 0.0071 37.6 9.8 97 1052-1149 101-203 (1104)
235 1byi_A Dethiobiotin synthase; 21.6 88 0.003 32.1 5.2 33 459-494 6-38 (224)
236 3cg4_A Response regulator rece 21.5 4.5E+02 0.016 23.8 9.9 102 1060-1168 22-127 (142)
237 3grc_A Sensor protein, kinase; 21.2 2.7E+02 0.0093 25.4 8.2 94 1070-1169 28-128 (140)
238 2j37_W Signal recognition part 21.1 3.7E+02 0.013 31.9 11.0 28 1053-1080 110-137 (504)
239 2r44_A Uncharacterized protein 20.8 53 0.0018 36.2 3.4 26 454-479 45-70 (331)
240 3io5_A Recombination and repai 20.7 2.3E+02 0.0079 31.8 8.4 41 458-499 31-71 (333)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-80 Score=790.60 Aligned_cols=462 Identities=39% Similarity=0.674 Sum_probs=381.0
Q ss_pred CCch-hhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHH
Q 000994 429 TPEL-FKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1196)
Q Consensus 429 ~P~~-l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k 507 (1196)
+|+. ..++|+|||++||+||..++..+.||||||+||||||+|+|+++.++.......+|+|||||.+++.||.+||.+
T Consensus 228 ~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~ 307 (800)
T 3mwy_W 228 QPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEK 307 (800)
T ss_dssp CCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHH
T ss_pred CCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHH
Confidence 4444 457999999999999999999999999999999999999999999987776777999999999999999999999
Q ss_pred hCCCCccccccCChhhHHHHhhccC---cccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHH
Q 000994 508 FCPDLKTLPYWGGLQERMVLRKNIN---PKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRW 584 (1196)
Q Consensus 508 ~~p~l~v~~y~G~~~~r~~l~~~~~---~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~ 584 (1196)
|+|++++++|+|+...+..++.... ..........++|+||||+++..+...|..+.|++|||||||++||..|..+
T Consensus 308 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~ 387 (800)
T 3mwy_W 308 WAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLY 387 (800)
T ss_dssp HSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHH
T ss_pred HCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHH
Confidence 9999999999999888776554211 1111123467899999999999999999999999999999999999999999
Q ss_pred HHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHHH
Q 000994 585 KTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLR 664 (1196)
Q Consensus 585 kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~ql~rL~~ILkpfmLR 664 (1196)
+++..+++.+||+|||||++|++.|||++++||.|+.|.....|.... ........+.+|+.+|+|||+|
T Consensus 388 ~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~----------~~~~~~~~~~~L~~~l~p~~lR 457 (800)
T 3mwy_W 388 ESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN----------QDEEQEEYIHDLHRRIQPFILR 457 (800)
T ss_dssp HHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C----------CTTHHHHHHHHHHHTTGGGEEE
T ss_pred HHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc----------cchhHHHHHHHHHHHHhHHHhh
Confidence 999999999999999999999999999999999999998766654211 1112345688999999999999
Q ss_pred hhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHHHHhhCCchhhccccC
Q 000994 665 RVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEG 744 (1196)
Q Consensus 665 R~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnHP~Lfer~~~ 744 (1196)
|+|++|...||++.+.+++|+||+.|+.+|+.+...... . +.. .......++++++++||++||||.|+...+.
T Consensus 458 R~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~-~-l~~----~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~ 531 (800)
T 3mwy_W 458 RLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYS-A-LTA----GAKGGHFSLLNIMNELKKASNHPYLFDNAEE 531 (800)
T ss_dssp CCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------------CTHHHHHHHHHHHHHCGGGSSSHHH
T ss_pred hhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHH-H-Hhh----ccccchhhHHHHHHHHHHHhcChhhhcchHH
Confidence 999999999999999999999999999999998765311 1 111 1112234689999999999999998642100
Q ss_pred CcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHHhHhhccchhhhhhh
Q 000994 745 SSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQS 824 (1196)
Q Consensus 745 ~s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~~~~~ 824 (1196)
.. ...+
T Consensus 532 ~~------------------------------------------------------------------~~~~-------- 537 (800)
T 3mwy_W 532 RV------------------------------------------------------------------LQKF-------- 537 (800)
T ss_dssp HH------------------------------------------------------------------CCCC--------
T ss_pred HH------------------------------------------------------------------HHhc--------
Confidence 00 0000
Q ss_pred hhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhhhccccccCCCCCcch
Q 000994 825 IFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKV 904 (1196)
Q Consensus 825 ~~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1196)
+ ++..
T Consensus 538 ------------------~-----------------------------------------------~~~~---------- 542 (800)
T 3mwy_W 538 ------------------G-----------------------------------------------DGKM---------- 542 (800)
T ss_dssp ---------------------------------------------------------------------C----------
T ss_pred ------------------c-----------------------------------------------cccc----------
Confidence 0 0000
Q ss_pred hhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccccCCcchhcccccc
Q 000994 905 RAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEE 984 (1196)
Q Consensus 905 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~ 984 (1196)
.. .
T Consensus 543 -----------------------------~~-------~----------------------------------------- 545 (800)
T 3mwy_W 543 -----------------------------TR-------E----------------------------------------- 545 (800)
T ss_dssp -----------------------------CS-------H-----------------------------------------
T ss_pred -----------------------------cH-------H-----------------------------------------
Confidence 00 0
Q ss_pred cCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCcccccccccHHHHHHHH
Q 000994 985 QHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDIL 1064 (1196)
Q Consensus 985 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~Ld~L 1064 (1196)
.. ...++..|||+.+|+++
T Consensus 546 ----~~---------------------------------------------------------~~~l~~~s~K~~~L~~l 564 (800)
T 3mwy_W 546 ----NV---------------------------------------------------------LRGLIMSSGKMVLLDQL 564 (800)
T ss_dssp ----HH---------------------------------------------------------HHHHHHTCHHHHHHHHH
T ss_pred ----HH---------------------------------------------------------HHHhhhcChHHHHHHHH
Confidence 00 00113459999999999
Q ss_pred HHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHcc-CCCceEEEEecCccccccCcccC
Q 000994 1065 LKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLLSTRAGGLGINLTAA 1143 (1196)
Q Consensus 1065 L~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~-~~di~VfLLSTrAGGlGINLTaA 1143 (1196)
|.++++.|+||||||||+.|+++|+++|..+|++|++|+|+++.++|+.++++|++ ++..+|||+||+|||+||||++|
T Consensus 565 L~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a 644 (800)
T 3mwy_W 565 LTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTA 644 (800)
T ss_dssp HHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTC
T ss_pred HHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999997 55678999999999999999999
Q ss_pred CEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1144 DTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1144 dtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
|+||+|||+|||+.+.||+|||||+||+|+|+|||||++|||||+|++.+
T Consensus 645 ~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~ 694 (800)
T 3mwy_W 645 DTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERA 694 (800)
T ss_dssp CEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHH
T ss_pred ceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998653
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-77 Score=749.93 Aligned_cols=474 Identities=30% Similarity=0.497 Sum_probs=385.7
Q ss_pred ccCCchhhccCcHHHHHHHHHHHHhh-----hcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc----CCcEEEEeCCcc
Q 000994 427 VQTPELFKGSLKEYQLKGLQWLVNCY-----EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI----WGPFLVVAPASV 497 (1196)
Q Consensus 427 v~~P~~l~~~LrpyQl~gl~wL~~~~-----~~~~ggILADeMGLGKTlqaIall~~l~~~~~~----~gp~LIV~P~sl 497 (1196)
+..|+.+...|+|||.+|++||+.++ ..+.||||||+||||||+|+|+++..+....+. .+++|||||.++
T Consensus 46 ~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sl 125 (644)
T 1z3i_X 46 VVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSL 125 (644)
T ss_dssp EECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHH
T ss_pred EeeChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHH
Confidence 45678889999999999999999876 456789999999999999999999998765432 356999999999
Q ss_pred HHHHHHHHHHhCCC-CccccccC-ChhhHH-HHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCc
Q 000994 498 LNNWADEISRFCPD-LKTLPYWG-GLQERM-VLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQ 574 (1196)
Q Consensus 498 l~nW~~Ei~k~~p~-l~v~~y~G-~~~~r~-~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH 574 (1196)
+.||.+||.+|+|. +.++.++| +...+. .+....... .....++|+||||+++..+...+....|++||+||||
T Consensus 126 l~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH 202 (644)
T 1z3i_X 126 VRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQ---GMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGH 202 (644)
T ss_dssp HHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCC---SSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGG
T ss_pred HHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhc---CCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECce
Confidence 99999999999875 55555554 433322 122211110 1113578999999999999999999999999999999
Q ss_pred cccCcccHHHHHHHhccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCc-----chH
Q 000994 575 AIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTL-----NEH 649 (1196)
Q Consensus 575 ~iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~-----~~~ 649 (1196)
++||+.++.++++..+++.+||+|||||++|++.|||++++||+|++|++...|.++|..|+..+...+... ...
T Consensus 203 ~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~ 282 (644)
T 1z3i_X 203 RLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQ 282 (644)
T ss_dssp GCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHH
T ss_pred ecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998765544322 234
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHH
Q 000994 650 QLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQL 729 (1196)
Q Consensus 650 ql~rL~~ILkpfmLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqL 729 (1196)
.+.+|+.+++|||+||+|.+|...||+|++.+++|+||+.|+.+|+.+.........+. .+ ....+.+..++.|
T Consensus 283 ~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~--~g----~~~~~~l~~l~~L 356 (644)
T 1z3i_X 283 KLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQ--TG----KISVSSLSSITSL 356 (644)
T ss_dssp HHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSC--TT----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh--cC----ccchhHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999987653322111 11 1224567889999
Q ss_pred HHhhCCchhhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHH
Q 000994 730 RKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELF 809 (1196)
Q Consensus 730 RKvCnHP~Lfer~~~~s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l 809 (1196)
||+||||.++.... .. ...+
T Consensus 357 rk~c~hp~l~~~~~----------------------------------------------~~--------~~~~------ 376 (644)
T 1z3i_X 357 KKLCNHPALIYEKC----------------------------------------------LT--------GEEG------ 376 (644)
T ss_dssp HHHHHCTHHHHHHH----------------------------------------------HH--------TCTT------
T ss_pred HHHhCCHHHHHHHH----------------------------------------------hc--------ccch------
Confidence 99999998853110 00 0000
Q ss_pred HhHhhccchhhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhh
Q 000994 810 QKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEA 889 (1196)
Q Consensus 810 ~~~~ni~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 889 (1196)
+
T Consensus 377 ----------------------------------~--------------------------------------------- 377 (644)
T 1z3i_X 377 ----------------------------------F--------------------------------------------- 377 (644)
T ss_dssp ----------------------------------C---------------------------------------------
T ss_pred ----------------------------------h---------------------------------------------
Confidence 0
Q ss_pred hccccccCCCCCcchhhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcc
Q 000994 890 MDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPIN 969 (1196)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~ 969 (1196)
++.. ...|..
T Consensus 378 -~~~~---------------------------------------------------------------~~~~~~------ 387 (644)
T 1z3i_X 378 -DGAL---------------------------------------------------------------DLFPQN------ 387 (644)
T ss_dssp -TTGG---------------------------------------------------------------GTSCSS------
T ss_pred -hhHH---------------------------------------------------------------hhcccc------
Confidence 0000 000000
Q ss_pred cccCCcchhcccccccCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCcc
Q 000994 970 VQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPA 1049 (1196)
Q Consensus 970 ~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~ 1049 (1196)
. . ...
T Consensus 388 ---------------------------------~----------------------------------~--------~~~ 392 (644)
T 1z3i_X 388 ---------------------------------Y----------------------------------S--------TKA 392 (644)
T ss_dssp ---------------------------------C----------------------------------C--------SSS
T ss_pred ---------------------------------c----------------------------------c--------ccc
Confidence 0 0 000
Q ss_pred cccccccHHHHHHHHHHHHhh-CCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCC-ceEE
Q 000994 1050 KLLTDSGKLQTLDILLKRLRA-ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSD-IFVF 1127 (1196)
Q Consensus 1050 ~li~~SgKL~~Ld~LL~~Lk~-~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~d-i~Vf 1127 (1196)
.....|||+..|+.+|..++. .|+||||||||+.++++|+++|..+|+.|++|+|+++.++|..++++|++.+. .+||
T Consensus 393 ~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~ 472 (644)
T 1z3i_X 393 VEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIF 472 (644)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEE
T ss_pred cCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEE
Confidence 002348999999999999975 58999999999999999999999999999999999999999999999998543 6799
Q ss_pred EEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1128 LLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1128 LLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
|+||+|||+||||++||+||+||++|||+.+.||+||+||+||+|+|+||+||++|||||+|++.+
T Consensus 473 L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~ 538 (644)
T 1z3i_X 473 MLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQ 538 (644)
T ss_dssp EEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHH
T ss_pred EEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998654
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4e-71 Score=671.50 Aligned_cols=430 Identities=32% Similarity=0.580 Sum_probs=377.1
Q ss_pred CchhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhC
Q 000994 430 PELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFC 509 (1196)
Q Consensus 430 P~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~ 509 (1196)
|..+...|+|||.+|+.||...+..+.||||||+||+|||+++++++..+..... .+++|||||.+++.||.+||.+|+
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEECSTTHHHHHHHHHHHC
T ss_pred ChhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEccHHHHHHHHHHHHHHC
Confidence 7888999999999999999988888999999999999999999999998875543 479999999999999999999999
Q ss_pred CCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHh
Q 000994 510 PDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS 589 (1196)
Q Consensus 510 p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~ 589 (1196)
|++++.+|+|+... .....++|+||||+.+..+.. +....|++||+||||+++|..+.+++++..
T Consensus 110 ~~~~v~~~~g~~~~--------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~ 174 (500)
T 1z63_A 110 PHLRFAVFHEDRSK--------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKE 174 (500)
T ss_dssp TTSCEEECSSSTTS--------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHT
T ss_pred CCceEEEEecCchh--------------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHh
Confidence 99999999986421 012457899999999988866 778899999999999999999999999999
Q ss_pred ccccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHHHhhhhh
Q 000994 590 FNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKD 669 (1196)
Q Consensus 590 l~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~a~~~~~~~~~ql~rL~~ILkpfmLRR~Kkd 669 (1196)
+.+.++|+|||||++|++.|||++++||.|+.|++...|.+.|..|+... +.....+|+.+++|+++||+|.+
T Consensus 175 l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~-------~~~~~~~l~~~l~~~~lrr~k~~ 247 (500)
T 1z63_A 175 LKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG-------DNMAKEELKAIISPFILRRTKYD 247 (500)
T ss_dssp SCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTT-------CHHHHHHHHHHHTTTEECCCTTC
T ss_pred hccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccc-------cHHHHHHHHHHHhhHeeeecccc
Confidence 99999999999999999999999999999999999999999999888653 34567889999999999999976
Q ss_pred --hhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhhhhhccccCCcchHhHHHHHHHHHHHHHhhCCchhhccccCCcc
Q 000994 670 --VISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSY 747 (1196)
Q Consensus 670 --V~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnHP~Lfer~~~~s~ 747 (1196)
+..+||++.+..++|+||+.|+.+|+.+...... .+.. .........++..++++|++|+||.++...+
T Consensus 248 ~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~--~~~~---~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~---- 318 (500)
T 1z63_A 248 KAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFN--NIDS---VTGIKRKGMILSTLLKLKQIVDHPALLKGGE---- 318 (500)
T ss_dssp HHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTT--TTTT---CCTHHHHHHHHHHHHHHHHHTTCTHHHHCSC----
T ss_pred cchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHH--HHHh---hhcccchHHHHHHHHHHHHHhCCHHHhcCcc----
Confidence 6779999999999999999999999998776421 1111 1122345568889999999999997742000
Q ss_pred cccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHHhHhhccchhhhhhhhhh
Q 000994 748 LYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFS 827 (1196)
Q Consensus 748 ~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~ll~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~~~~~~~~ 827 (1196)
T Consensus 319 -------------------------------------------------------------------------------- 318 (500)
T 1z63_A 319 -------------------------------------------------------------------------------- 318 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhchhhhHHhhhhccccccCCCCCcchhhh
Q 000994 828 LASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAV 907 (1196)
Q Consensus 828 ~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1196)
T Consensus 319 -------------------------------------------------------------------------------- 318 (500)
T 1z63_A 319 -------------------------------------------------------------------------------- 318 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHHHHHHhHhhhcccccccCCCCCCCcccccCCcchhcccccccCC
Q 000994 908 TRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHD 987 (1196)
Q Consensus 908 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~~~~ 987 (1196)
T Consensus 319 -------------------------------------------------------------------------------- 318 (500)
T 1z63_A 319 -------------------------------------------------------------------------------- 318 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCccchhhhhhhccCCCCCCCCCCcccccccccHHHHHHHHHHH
Q 000994 988 PWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKR 1067 (1196)
Q Consensus 988 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~Ld~LL~~ 1067 (1196)
..+..|+|+..|.++|.+
T Consensus 319 --------------------------------------------------------------~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 319 --------------------------------------------------------------QSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp --------------------------------------------------------------CCSTTCHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------chhhcchhHHHHHHHHHH
Confidence 001237899999999999
Q ss_pred HhhCCCeEEEEecchHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEE
Q 000994 1068 LRAENHRVLLFAQMTKMLNILEDYMNYR-KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTV 1146 (1196)
Q Consensus 1068 Lk~~ghKVLIFSQ~t~mlDlLee~L~~r-g~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtV 1146 (1196)
+...|+|+|||++++.+++.|+++|... |+++.+++|+++.++|..++++|++++++.|+|+||++||.||||++|++|
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred HHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 9999999999999999999999999886 999999999999999999999999987888999999999999999999999
Q ss_pred EEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1147 IFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1147 IfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
|+||++|||..+.||+||+||+||+++|+||+|+++|||||+|++.+
T Consensus 417 i~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~ 463 (500)
T 1z63_A 417 IHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLL 463 (500)
T ss_dssp EESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHH
T ss_pred EEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998654
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.1e-47 Score=495.80 Aligned_cols=425 Identities=20% Similarity=0.244 Sum_probs=318.6
Q ss_pred hccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCc
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLK 513 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~ 513 (1196)
..+|+|||.+++.|++.. .+.+|||||+||+|||+++++++..+...+. .+++|||||.+++.||..||.+++ +++
T Consensus 151 ~~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~sLl~Qw~~E~~~~f-~l~ 226 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPETLQHQWLVEMLRRF-NLR 226 (968)
T ss_dssp SSCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCTTTHHHHHHHHHHHS-CCC
T ss_pred CCCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCHHHHHHHHHHHHHHh-CCC
Confidence 468999999999999863 3668999999999999999999988876543 368999999999999999998887 678
Q ss_pred cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcH---hhhhccCccEEEECCCccccCcccHH---HHHH
Q 000994 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE---KYFRRVKWQYMVLDEAQAIKSSNSIR---WKTL 587 (1196)
Q Consensus 514 v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~---~~l~~~~w~~VIlDEAH~iKn~~S~~---~kal 587 (1196)
+.+|+|+...... ... ......++|+|+||+.+.++. ..+....|++||+||||+++|..+.. ++.+
T Consensus 227 v~v~~~~~~~~~~-~~~------~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l 299 (968)
T 3dmq_A 227 FALFDDERYAEAQ-HDA------YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAI 299 (968)
T ss_dssp CEECCHHHHHHHH-HTT------CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHH
T ss_pred EEEEccchhhhhh-hhc------ccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHH
Confidence 8888775433211 111 111246789999999998764 44667799999999999999877554 7888
Q ss_pred Hhc--cccceEEeecCCCCCChHHHHHHHHhhCCCCCCCHHHHHHHHhhhcccc-----cccC------------CCc--
Q 000994 588 LSF--NCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESH-----AEHG------------GTL-- 646 (1196)
Q Consensus 588 ~~l--~~~~RllLTGTPiqN~l~EL~sLL~FL~P~~f~s~~~F~~~f~~~ie~~-----a~~~------------~~~-- 646 (1196)
..+ +++++|+|||||++|++.|+|++++|+.|+.|++...|..++....... ...+ ..+
T Consensus 300 ~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~ 379 (968)
T 3dmq_A 300 EQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGE 379 (968)
T ss_dssp HHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCT
T ss_pred HHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcc
Confidence 877 7889999999999999999999999999999999999987754321100 0000 000
Q ss_pred -----------------chHHHHHHHHHHH-----HHHHHhhhhhhhccCCCceEEEEEcCCCHHHHHHHHHHHHHHhhh
Q 000994 647 -----------------NEHQLNRLHAILK-----PFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLA 704 (1196)
Q Consensus 647 -----------------~~~ql~rL~~ILk-----pfmLRR~KkdV~~eLP~K~E~~V~c~LT~~Qr~lY~~l~~~is~~ 704 (1196)
.......+..++. ..++|+.+..+. .+|++....+.+++++.++..|......
T Consensus 380 ~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~~~~---- 454 (968)
T 3dmq_A 380 QDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVSGIM---- 454 (968)
T ss_dssp TCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHHHHT----
T ss_pred hhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHHHhhh----
Confidence 0011122222222 334555566664 7899999999999999988888642110
Q ss_pred hhhccccCCcchHhHHHHHHHHHHHHHhhCCchhhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchh
Q 000994 705 GLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKI 784 (1196)
Q Consensus 705 ~ll~~~~~~~~~~~~~~lmnlvmqLRKvCnHP~Lfer~~~~s~~~f~~~~~~~~~~~~~~~~~~~~s~~~n~i~~~lp~l 784 (1196)
.. ........ ..|.+|+.+
T Consensus 455 ---~~--~~~~~~~~-----------~~~l~pe~~--------------------------------------------- 473 (968)
T 3dmq_A 455 ---GA--RKSAEDRA-----------RDMLYPERI--------------------------------------------- 473 (968)
T ss_dssp ---TC--CSSGGGGT-----------HHHHCSGGG---------------------------------------------
T ss_pred ---hh--hhhhHHHH-----------hhhcChHHH---------------------------------------------
Confidence 00 00000000 000000000
Q ss_pred hHHHhhhhhhhhhhcccCCchhHHHHhHhhccchhhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhH
Q 000994 785 VHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFM 864 (1196)
Q Consensus 785 l~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~ls~~e~~~~~~~~~~ 864 (1196)
.
T Consensus 474 -------------------------------------~------------------------------------------ 474 (968)
T 3dmq_A 474 -------------------------------------Y------------------------------------------ 474 (968)
T ss_dssp -------------------------------------T------------------------------------------
T ss_pred -------------------------------------H------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHhhhhhhhchhhhHHhhhhccccccCCCCCcchhhhhhhhccCccchhhhhhhhccCCCCCCCcchhhhhhHH
Q 000994 865 ERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQE 944 (1196)
Q Consensus 865 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 944 (1196)
T Consensus 475 -------------------------------------------------------------------------------- 474 (968)
T 3dmq_A 475 -------------------------------------------------------------------------------- 474 (968)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHhhhcccccccCCCCCCCcccccCCcchhcccccccCChhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCC
Q 000994 945 RLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELP 1024 (1196)
Q Consensus 945 ~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1024 (1196)
..++.
T Consensus 475 ------------------------------------------------------------------------~~l~~--- 479 (968)
T 3dmq_A 475 ------------------------------------------------------------------------QEFEG--- 479 (968)
T ss_dssp ------------------------------------------------------------------------TTTTS---
T ss_pred ------------------------------------------------------------------------HHhhh---
Confidence 00000
Q ss_pred CccchhhhhhhccCCCCCCCCCCcccccccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHh-CCCcEEEEe
Q 000994 1025 VAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNY-RKYRYLRLD 1103 (1196)
Q Consensus 1025 ~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~-rg~~y~rLD 1103 (1196)
+....+..+.|+..|.++|.. ..+.|+|||+++..+++.|.++|.. .|+++..++
T Consensus 480 ----------------------~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lh 535 (968)
T 3dmq_A 480 ----------------------DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFH 535 (968)
T ss_dssp ----------------------SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEEC
T ss_pred ----------------------hhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 000113458899999999988 5689999999999999999999995 599999999
Q ss_pred CCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1104 GSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1104 GStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
|+++..+|..++++|++..+...+|++|.++|.|||++.|++||+||++|||....|++||+||+||++.|+||++++.+
T Consensus 536 G~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 536 EGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEK 615 (968)
T ss_dssp TTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETT
T ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCC
Confidence 99999999999999998653445578999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhccC
Q 000994 1184 FIFSMIGNGM 1193 (1196)
Q Consensus 1184 TIEErIl~~~ 1193 (1196)
|+||+|++..
T Consensus 616 t~ee~i~~~~ 625 (968)
T 3dmq_A 616 TAQSVLVRWY 625 (968)
T ss_dssp SHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9999998643
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5e-42 Score=408.87 Aligned_cols=137 Identities=15% Similarity=0.216 Sum_probs=124.7
Q ss_pred ccccHHHHHHHHHHHHh--hCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeC--------CCCHHHHHHHHHHHccCC
Q 000994 1053 TDSGKLQTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDG--------SSTIMDRRDMVRDFQHRS 1122 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk--~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDG--------Stk~~dR~~~V~dFq~~~ 1122 (1196)
..++|+..|.++|.++. ..++|||||+++..+++.+.++|...|+++.+++| +++.++|+.++++|++ +
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-~ 418 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR-G 418 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH-T
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhc-C
Confidence 34889999999999987 56899999999999999999999999999999999 8888999999999997 4
Q ss_pred CceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccCC
Q 000994 1123 DIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGMQ 1194 (1196)
Q Consensus 1123 di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~~ 1194 (1196)
++.| |++|.++|.||||++|++||+||++|||....|++|||||.|| +.||+|+++||+||+|+..++
T Consensus 419 ~~~v-Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~ 486 (494)
T 1wp9_A 419 EFNV-LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSR 486 (494)
T ss_dssp SCSE-EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC
T ss_pred CceE-EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHH
Confidence 4554 8899999999999999999999999999999999999999999 999999999999999987654
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=2e-42 Score=387.57 Aligned_cols=140 Identities=29% Similarity=0.452 Sum_probs=121.2
Q ss_pred cccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1054 DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR-KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~r-g~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
.|+|+..|.++|.++.+.|+||||||||+.++++|+++|... |+++++++|+++.++|..++++|++++++.|||+||+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 389999999999999999999999999999999999999885 9999999999999999999999999888999999999
Q ss_pred ccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccC
Q 000994 1133 AGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGM 1193 (1196)
Q Consensus 1133 AGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~ 1193 (1196)
+||.||||++|++||+||++|||+.+.||+||+||+||+++|+||+|+++|||||+|++.+
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~ 234 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLL 234 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHH
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998653
No 7
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=3.4e-40 Score=370.90 Aligned_cols=132 Identities=16% Similarity=0.105 Sum_probs=111.2
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
..|||+..|++||..+++.||||||||||++|+|+||+||..+|++|+|+||++..+ +++. .+..++|||+ |+
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~-----~~~~~~i~Ll-ts 178 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA-----NDFSCTVHLF-SS 178 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------CCSEEEEEE-ES
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc-----ccCCceEEEE-EC
Confidence 459999999999999999999999999999999999999999999999999997643 2221 2457899987 57
Q ss_pred ccccccC-----cccCCEEEEeCCCCCcchH-HHHHHhhhcc--CCCCcEEEEEeeeCCcHHHHHhc
Q 000994 1133 AGGLGIN-----LTAADTVIFYESDWNPTLD-LQAMDRAHRL--GQTKDVSSWLKLCHLFIFSMIGN 1191 (1196)
Q Consensus 1133 AGGlGIN-----LTaAdtVIfyDsdWNPt~d-~QAmdRahRi--GQtK~VtVYRLIt~gTIEErIl~ 1191 (1196)
+||.||| |++||+||+|||+|||+.| .|||+|+||+ ||+|+|.|||||+.|||||.|+.
T Consensus 179 ag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~ 245 (328)
T 3hgt_A 179 EGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLF 245 (328)
T ss_dssp SCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHH
T ss_pred CCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHH
Confidence 9999997 8999999999999999999 9999999999 78999999999999999999874
No 8
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.2e-37 Score=375.09 Aligned_cols=132 Identities=11% Similarity=0.198 Sum_probs=113.4
Q ss_pred cccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCc
Q 000994 1054 DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrA 1133 (1196)
.++|+..|.++|.. ..|+|+|||++...+++.|.++|. +..++|+++..+|+.++++|++ +++.| |++|.+
T Consensus 333 ~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~-g~~~v-Lv~T~~ 403 (472)
T 2fwr_A 333 SKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT-GRFRA-IVSSQV 403 (472)
T ss_dssp CSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH-SSCSB-CBCSSC
T ss_pred ChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC-CCCCE-EEEcCc
Confidence 37899999999988 468999999999999999999984 3468899999999999999987 56666 689999
Q ss_pred cccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCC-CcEEEEEeeeCCcHHHHHhccCC
Q 000994 1134 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQT-KDVSSWLKLCHLFIFSMIGNGMQ 1194 (1196)
Q Consensus 1134 GGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQt-K~VtVYRLIt~gTIEErIl~~~~ 1194 (1196)
+|.|||++.+++||+||++|||....|++|||||.||. +.|.||.|++++|+||+|...++
T Consensus 404 ~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~ 465 (472)
T 2fwr_A 404 LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRK 465 (472)
T ss_dssp CCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------
T ss_pred hhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999 89999999999999999987765
No 9
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2e-33 Score=343.46 Aligned_cols=131 Identities=21% Similarity=0.269 Sum_probs=76.9
Q ss_pred cccHHHHHHHHHHHHh--hCCCeEEEEecchHHHHHHHHHHHhC------------CCcEEEEeCCCCHHHHHHHHHHHc
Q 000994 1054 DSGKLQTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNYR------------KYRYLRLDGSSTIMDRRDMVRDFQ 1119 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk--~~ghKVLIFSQ~t~mlDlLee~L~~r------------g~~y~rLDGStk~~dR~~~V~dFq 1119 (1196)
.++|+..|.++|.+.. ..++|+|||++++.+++.|.++|... |+.+..++|+++.++|..++++|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 4899999999998876 56899999999999999999999775 666777788899999999999999
Q ss_pred cCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHH
Q 000994 1120 HRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMI 1189 (1196)
Q Consensus 1120 ~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErI 1189 (1196)
.++++.| |++|.++|.|||++++|+||+||++|||....|++|| ||.+++.||.|++++|+||+.
T Consensus 450 ~~g~~~v-LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~~ 514 (556)
T 4a2p_A 450 TSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENE 514 (556)
T ss_dssp ----CCE-EEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHHH
T ss_pred ccCceEE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHHH
Confidence 8677776 7899999999999999999999999999999998877 777999999999999998763
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1e-33 Score=366.94 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=84.3
Q ss_pred cccHHHHHHHHHHHHh--hCCCeEEEEecchHHHHHHHHHHHhC------------CCcEEEEeCCCCHHHHHHHHHHHc
Q 000994 1054 DSGKLQTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNYR------------KYRYLRLDGSSTIMDRRDMVRDFQ 1119 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk--~~ghKVLIFSQ~t~mlDlLee~L~~r------------g~~y~rLDGStk~~dR~~~V~dFq 1119 (1196)
.++|+..|.++|.+.. ..++|||||++++++++.|.++|... |+.+..++|+++..+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 3899999999999875 45899999999999999999999876 666777788899999999999998
Q ss_pred cCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHh
Q 000994 1120 HRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIG 1190 (1196)
Q Consensus 1120 ~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl 1190 (1196)
.++++.| |++|.++|.||||+++|+||+||++|||....|++|| ||.+++.||.|++.+|+||++.
T Consensus 691 ~~g~~~V-LVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~ 756 (936)
T 4a2w_A 691 TSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK 756 (936)
T ss_dssp ---CCSE-EEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH
T ss_pred ccCCeeE-EEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH
Confidence 7667765 7899999999999999999999999999999998888 7789999999999999998765
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.7e-33 Score=360.29 Aligned_cols=130 Identities=21% Similarity=0.273 Sum_probs=80.8
Q ss_pred cccHHHHHHHHHHHHh--hCCCeEEEEecchHHHHHHHHHHHh------------CCCcEEEEeCCCCHHHHHHHHHHHc
Q 000994 1054 DSGKLQTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNY------------RKYRYLRLDGSSTIMDRRDMVRDFQ 1119 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk--~~ghKVLIFSQ~t~mlDlLee~L~~------------rg~~y~rLDGStk~~dR~~~V~dFq 1119 (1196)
.++|+..|.++|.+.. ..++|||||++++.+++.|.++|.. .|+.+..++|+++.++|..++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 4899999999999854 5679999999999999999999976 3677888899999999999999999
Q ss_pred cCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHH
Q 000994 1120 HRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSM 1188 (1196)
Q Consensus 1120 ~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEEr 1188 (1196)
+++++.| |++|.++|.|||++++|+||+||++|||....|++|| ||.+++.||+|++.+|+||+
T Consensus 691 ~~g~~~v-LVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 691 TSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN 754 (797)
T ss_dssp ---CCSE-EEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH
T ss_pred ccCCceE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCCcHHHH
Confidence 8667765 7899999999999999999999999999999998888 67799999999999999876
No 12
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.6e-32 Score=334.86 Aligned_cols=131 Identities=18% Similarity=0.284 Sum_probs=95.4
Q ss_pred cccHHHHHHHHHHHHhhC--CCeEEEEecchHHHHHHHHHHHhC------------CCcEEEEeCCCCHHHHHHHHHHHc
Q 000994 1054 DSGKLQTLDILLKRLRAE--NHRVLLFAQMTKMLNILEDYMNYR------------KYRYLRLDGSSTIMDRRDMVRDFQ 1119 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk~~--ghKVLIFSQ~t~mlDlLee~L~~r------------g~~y~rLDGStk~~dR~~~V~dFq 1119 (1196)
.++|+..|.++|.++... ++|||||+++..+++.|.++|... |..+..++|+++.++|..++++|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 489999999999988644 599999999999999999999876 456677778999999999999999
Q ss_pred cCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHH
Q 000994 1120 HRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMI 1189 (1196)
Q Consensus 1120 ~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErI 1189 (1196)
+++++.| |++|.++|.|||++++++||+||++|||....|++|| ||.+++.+|.|+++++++++.
T Consensus 449 ~~g~~~v-LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 449 ASGDNNI-LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp ---CCSE-EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHHH
T ss_pred cCCCeeE-EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHHH
Confidence 8677777 6799999999999999999999999999999997777 888999999999999998753
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=1.1e-30 Score=317.22 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhhC-CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec-Ccc
Q 000994 1057 KLQTLDILLKRLRAE-NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST-RAG 1134 (1196)
Q Consensus 1057 KL~~Ld~LL~~Lk~~-ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST-rAG 1134 (1196)
|...+..++.++... +.++|||+. +...+.|.++|...+.++..++|+++.++|..++++|++ +++.| |++| .++
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~-g~~~v-Lv~T~~~~ 408 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN-GKGII-IVASYGVF 408 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHH-CCSCE-EEEEHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhC-CCCCE-EEEEcChh
Confidence 444455555555444 556677777 888999999999998999999999999999999999986 56665 5566 999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCC-cEEEEEeeeCCcHHHHHhcc
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK-DVSSWLKLCHLFIFSMIGNG 1192 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK-~VtVYRLIt~gTIEErIl~~ 1192 (1196)
|.|||++.+++||++|++|||....|++||+||.||.+ .|+||.++...++++++.+.
T Consensus 409 ~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~~~ 467 (510)
T 2oca_A 409 STGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSANT 467 (510)
T ss_dssp HHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSSSC
T ss_pred hcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhhhhh
Confidence 99999999999999999999999999999999999987 89999999988877666544
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=4.9e-31 Score=332.35 Aligned_cols=129 Identities=19% Similarity=0.305 Sum_probs=85.6
Q ss_pred cccHHHHHHHHHHHHh--hCCCeEEEEecchHHHHHHHHHHHhCC----CcEEEEeC--------CCCHHHHHHHHHHHc
Q 000994 1054 DSGKLQTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNYRK----YRYLRLDG--------SSTIMDRRDMVRDFQ 1119 (1196)
Q Consensus 1054 ~SgKL~~Ld~LL~~Lk--~~ghKVLIFSQ~t~mlDlLee~L~~rg----~~y~rLDG--------Stk~~dR~~~V~dFq 1119 (1196)
.+.|+..|.++|.+.. ..++++|||++...+.+.|.++|...+ +++..+.| +++.++|+.++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 4789999999999874 357899999999999999999999988 89999955 899999999999998
Q ss_pred cCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHH
Q 000994 1120 HRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFS 1187 (1196)
Q Consensus 1120 ~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEE 1187 (1196)
.++++.| |++|.++|.|||++++++||+||++||+....|++|| +| .++..+|.|++.+++++
T Consensus 458 ~~g~~~v-LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR---~~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 458 ASGDHNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR---ARGSKCFLLTSNAGVIE 520 (696)
T ss_dssp ---CCSC-SEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHH
T ss_pred hcCCccE-EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-Cc---CCCceEEEEecCCCHHH
Confidence 7567776 7899999999999999999999999999999998888 66 47889999999999854
No 15
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.96 E-value=8.5e-29 Score=312.05 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=101.9
Q ss_pred ccHHHHHHHHHHHHhhC---CCeEEEEecchHHHHHHHHHHHhC------CCcEEEEeCC--------CCHHHHHHHHHH
Q 000994 1055 SGKLQTLDILLKRLRAE---NHRVLLFAQMTKMLNILEDYMNYR------KYRYLRLDGS--------STIMDRRDMVRD 1117 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~---ghKVLIFSQ~t~mlDlLee~L~~r------g~~y~rLDGS--------tk~~dR~~~V~d 1117 (1196)
+.|+..|.++|.+.... +.++|||++..++.+.|.++|... |+++..++|+ ++.++|+.++++
T Consensus 380 ~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~ 459 (699)
T 4gl2_A 380 NEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISK 459 (699)
T ss_dssp --CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHH
Confidence 56777777777775432 799999999999999999999987 9999999999 999999999999
Q ss_pred HccCCCceEEEEecCccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1118 FQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1118 Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
|+. +++.| |++|.++|.|||++++++||+||++|||....|++|||+|-| ..++.+...++
T Consensus 460 F~~-g~~~V-LVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~ 520 (699)
T 4gl2_A 460 FRT-GKINL-LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGS 520 (699)
T ss_dssp HCC----CC-SEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSS
T ss_pred Hhc-CCCcE-EEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCc
Confidence 987 55655 779999999999999999999999999999999999986655 45555666676
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=4.9e-27 Score=290.69 Aligned_cols=161 Identities=19% Similarity=0.240 Sum_probs=103.1
Q ss_pred hccCcHHHHHHHHHHHHhhhcC-CCeEEEeCCCCChHHHHHHHHHHHHHhc------ccCCcEEEEeC-CccHHHHH-HH
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQG-LNGILADEMGLGKTIQAMAFLAHLAEEK------NIWGPFLVVAP-ASVLNNWA-DE 504 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~-~ggILADeMGLGKTlqaIall~~l~~~~------~~~gp~LIV~P-~sll~nW~-~E 504 (1196)
...|+|||.+++++++..+.++ .+++|+++||+|||++++.++..+.... ...+++||||| ..|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3589999999999999877666 4589999999999999999988877643 13378999999 77889999 88
Q ss_pred HHHhCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcH------hhhhccCccEEEECCCccccC
Q 000994 505 ISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE------KYFRRVKWQYMVLDEAQAIKS 578 (1196)
Q Consensus 505 i~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~------~~l~~~~w~~VIlDEAH~iKn 578 (1196)
+..|.+.... +.+. ......+|+|+||+.+.... ..+....|++||+||||++.+
T Consensus 256 ~~~~~~~~~~--~~~~-----------------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~ 316 (590)
T 3h1t_A 256 FTPFGDARHK--IEGG-----------------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSA 316 (590)
T ss_dssp CTTTCSSEEE--CCC-------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----
T ss_pred HHhcchhhhh--hhcc-----------------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccc
Confidence 8877643222 1111 01245789999999997753 233345699999999999987
Q ss_pred cccHH-HHHHHhccccceEEeecCCCCCChHHHHHH
Q 000994 579 SNSIR-WKTLLSFNCRNRLLLTGTPIQNNMAELWAL 613 (1196)
Q Consensus 579 ~~S~~-~kal~~l~~~~RllLTGTPiqN~l~EL~sL 613 (1196)
..... ...+..+....+++|||||..+...+++.+
T Consensus 317 ~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~ 352 (590)
T 3h1t_A 317 RDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRY 352 (590)
T ss_dssp -----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHH
T ss_pred cchHHHHHHHHhCCcceEEEeccccccccchhHHHH
Confidence 64333 444555677889999999999877665543
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.94 E-value=1.2e-25 Score=262.37 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=108.3
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
..|...|..++... .+.++|||++.....+.+.++|...|+.+..++|.++.++|..+++.|++ +++.| |++|.++
T Consensus 235 ~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~v-lv~T~~~ 310 (391)
T 1xti_A 235 NEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD-FQRRI-LVATNLF 310 (391)
T ss_dssp GGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TCCSE-EEESCCC
T ss_pred hhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc-CCCcE-EEECChh
Confidence 44666777777664 57899999999999999999999999999999999999999999999986 45554 7899999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
+.|||+.++++||+||++||+....|++||++|.||+..+. .|++...
T Consensus 311 ~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~~ 358 (391)
T 1xti_A 311 GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSDEN 358 (391)
T ss_dssp SSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEE--EEECSHH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEE--EEEcccc
Confidence 99999999999999999999999999999999999876554 4666543
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.93 E-value=7.5e-25 Score=256.79 Aligned_cols=124 Identities=17% Similarity=0.264 Sum_probs=109.5
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
..|+..|..++... .+.++|||++....++.+.++|...|+.+..++|.++.++|..++++|++ +++.| |++|.++
T Consensus 243 ~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-Lv~T~~~ 318 (400)
T 1s2m_A 243 RQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ-GKVRT-LVCSDLL 318 (400)
T ss_dssp GGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT-TSSSE-EEESSCS
T ss_pred hhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc-CCCcE-EEEcCcc
Confidence 45777777777664 46799999999999999999999999999999999999999999999986 45555 7799999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
+.|||+.++++||+||++||+....|++||++|.||.. .+|.|++.+.
T Consensus 319 ~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~~ 366 (400)
T 1s2m_A 319 TRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWND 366 (400)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGGG
T ss_pred ccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccch
Confidence 99999999999999999999999999999999999764 5666777765
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=1.1e-24 Score=251.10 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=106.2
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
.|+..|..+|. ..+.++|||+......+.+.++|...|+++..++|+++.++|..++++|++ +++.| |++|.+++
T Consensus 225 ~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~v-lv~T~~~~ 299 (367)
T 1hv8_A 225 ERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ-KKIRI-LIATDVMS 299 (367)
T ss_dssp GHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHT-TSSSE-EEECTTHH
T ss_pred HHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHc-CCCeE-EEECChhh
Confidence 35555544443 568899999999999999999999999999999999999999999999986 45555 77899999
Q ss_pred cccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcH
Q 000994 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFI 1185 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTI 1185 (1196)
.|+|+..+++||+||++||+....|++||++|.|+...+ +.+++....
T Consensus 300 ~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~ 347 (367)
T 1hv8_A 300 RGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRREY 347 (367)
T ss_dssp HHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTSH
T ss_pred cCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHHH
Confidence 999999999999999999999999999999999987755 445666543
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.92 E-value=5.3e-24 Score=250.60 Aligned_cols=123 Identities=19% Similarity=0.269 Sum_probs=108.8
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
.|+..|..++.... +.++|||++.....+.+.++|...|+++..++|.++.++|..++++|++ +.+.| |++|.+++
T Consensus 262 ~k~~~l~~~~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~ 337 (410)
T 2j0s_A 262 WKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS-GASRV-LISTDVWA 337 (410)
T ss_dssp HHHHHHHHHHHHHT--SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH-TSSCE-EEECGGGS
T ss_pred hHHHHHHHHHHhcC--CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC-CCCCE-EEECChhh
Confidence 46677777777653 4599999999999999999999999999999999999999999999986 45554 77999999
Q ss_pred cccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
.|||+..+++||+||++||+....|++||++|.|++. .++.|++...
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 9999999999999999999999999999999999764 5666777765
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=2.2e-24 Score=245.97 Aligned_cols=117 Identities=14% Similarity=0.293 Sum_probs=103.1
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeC
Q 000994 1071 ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYE 1150 (1196)
Q Consensus 1071 ~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyD 1150 (1196)
.+.++|||++.....+.+.++|. ++..++|+++.++|..++++|++ +++.| |++|.+++.|||+..+++||+||
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~-~~~~v-lv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFRE-GEYDM-LITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEECHHHHTTCCCCCBSEEEESS
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHc-CCCcE-EEEcCccccCCCccCCCEEEEec
Confidence 47799999999999999888886 67899999999999999999986 45555 77899999999999999999999
Q ss_pred CCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHHhccCC
Q 000994 1151 SDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMIGNGMQ 1194 (1196)
Q Consensus 1151 sdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErIl~~~~ 1194 (1196)
++|++....|++||++|.||...+.+|.. ...+++++|.+..+
T Consensus 293 ~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 293 APQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp CCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999999888 77788888876543
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.91 E-value=5e-24 Score=250.48 Aligned_cols=125 Identities=21% Similarity=0.261 Sum_probs=96.8
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
.|+..|..++... .+.++|||+......+.+.++|...++.+..++|.++.++|..+++.|++ +.+.| |++|.+++
T Consensus 266 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~ 341 (414)
T 3eiq_A 266 WKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS-GSSRV-LITTDLLA 341 (414)
T ss_dssp THHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC-C---C-EEECSSCC
T ss_pred hHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc-CCCcE-EEECCccc
Confidence 4666666666654 35799999999999999999999999999999999999999999999976 44554 88999999
Q ss_pred cccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHH
Q 000994 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIF 1186 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIE 1186 (1196)
.|||+..+++||+||++||+....|++||++|.|+.. .+|.|++.+..+
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~~~ 390 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINMVTEEDKR 390 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC---------CEEEEECSTHHH
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHHHHH
Confidence 9999999999999999999999999999999999765 566688877543
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.91 E-value=3.8e-23 Score=240.67 Aligned_cols=122 Identities=19% Similarity=0.274 Sum_probs=104.6
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
.|+..|..++... .+.++|||++.....+.+.++|...++.+..++|.++.++|..++++|++ +++.| |++|.+++
T Consensus 229 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~~ 304 (395)
T 3pey_A 229 DKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE-GRSKV-LITTNVLA 304 (395)
T ss_dssp HHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT-TSCCE-EEECGGGS
T ss_pred HHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC-CCCCE-EEECChhh
Confidence 4555555555443 46799999999999999999999999999999999999999999999986 45555 78999999
Q ss_pred cccCcccCCEEEEeCCCC------CcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1136 LGINLTAADTVIFYESDW------NPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsdW------NPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
.|||+..+++||+||++| |+....|++||++|.|+... ++.|+..+
T Consensus 305 ~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 356 (395)
T 3pey_A 305 RGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV--AISFVHDK 356 (395)
T ss_dssp SSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEE--EEEEECSH
T ss_pred cCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCce--EEEEEech
Confidence 999999999999999999 99999999999999997654 45566654
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.91 E-value=1.6e-24 Score=252.78 Aligned_cols=109 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCC
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1196)
+.++|||+.....++.+.++|...++.+..++|+++.++|..++++|++ +++. +|++|.+++.|||++++++||+||+
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~-vlv~T~~~~~Gldi~~~~~Vi~~~~ 336 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-GSSR-ILISTDLLARGIDVQQVSLVINYDL 336 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC-CCCc-EEEECChhhcCCCcccCCEEEEeCC
Confidence 5699999999999999999999999999999999999999999999975 4454 5789999999999999999999999
Q ss_pred CCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1152 DWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1152 dWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
+|++....|++||++|.||+..+ +.|++...
T Consensus 337 p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~~ 367 (394)
T 1fuu_A 337 PANKENYIHRIGRGGRFGRKGVA--INFVTNED 367 (394)
T ss_dssp ---------------------------------
T ss_pred CCCHHHHHHHcCcccCCCCCceE--EEEEchhH
Confidence 99999999999999999987654 44566553
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.89 E-value=3.7e-21 Score=229.33 Aligned_cols=121 Identities=17% Similarity=0.305 Sum_probs=105.2
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
..|...|.++|.. .+.++|||++..+..+.+.++|...|+....++|.++.++|..++++|.+ +.+.| |++|.++
T Consensus 286 ~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~-g~~~v-LvaT~v~ 360 (434)
T 2db3_A 286 YAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKN-GSMKV-LIATSVA 360 (434)
T ss_dssp GGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHT-SSCSE-EEECGGG
T ss_pred HHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHc-CCCcE-EEEchhh
Confidence 3466666666655 34569999999999999999999999999999999999999999999986 45555 7899999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeC
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCH 1182 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~ 1182 (1196)
+.|||+..+++||+||++|++....|++||++|.|++..+. .|++.
T Consensus 361 ~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~--~~~~~ 406 (434)
T 2db3_A 361 SRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRAT--SFFDP 406 (434)
T ss_dssp TSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEE--EEECT
T ss_pred hCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEE--EEEec
Confidence 99999999999999999999999999999999999876544 45663
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.89 E-value=1.5e-21 Score=229.73 Aligned_cols=125 Identities=19% Similarity=0.260 Sum_probs=105.8
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
..|...|..+|... ..+.++|||+......+.+.++|...|+.+..++|.++.++|..++++|+. +++.| |++|.++
T Consensus 260 ~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~v-lvaT~~~ 336 (417)
T 2i4i_A 260 SDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS-GKSPI-LVATAVA 336 (417)
T ss_dssp GGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH-TSSCE-EEECHHH
T ss_pred HhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHc-CCCCE-EEECChh
Confidence 34555666666553 347899999999999999999999999999999999999999999999986 45554 7799999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
+.|||+..+++||+||++|++....|++||++|.|+. -.+|.|++...
T Consensus 337 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~~ 384 (417)
T 2i4i_A 337 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL--GLATSFFNERN 384 (417)
T ss_dssp HTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCC--ceEEEEEcccc
Confidence 9999999999999999999999999999999999976 45566676553
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.87 E-value=8e-21 Score=222.83 Aligned_cols=123 Identities=18% Similarity=0.233 Sum_probs=105.6
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
..|+..|..++... .+.++|||+......+.+.++|...++.+..++|.++.++|..++++|+. +++.| |++|.++
T Consensus 251 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~~ 326 (412)
T 3fht_A 251 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE-GKEKV-LVTTNVC 326 (412)
T ss_dssp HHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT-TSCSE-EEECGGG
T ss_pred HHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHC-CCCcE-EEEcCcc
Confidence 34666666666654 46799999999999999999999999999999999999999999999986 45555 7899999
Q ss_pred ccccCcccCCEEEEeCCCCCc------chHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1135 GLGINLTAADTVIFYESDWNP------TLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNP------t~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
+.|||+.++++||+||++||| ....|++||++|.|+.. .+|.|+...
T Consensus 327 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 379 (412)
T 3fht_A 327 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG--LAVNMVDSK 379 (412)
T ss_dssp TSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCE--EEEEEECSH
T ss_pred ccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCc--eEEEEEcCh
Confidence 999999999999999999987 48899999999999654 455566654
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.87 E-value=1.6e-20 Score=221.90 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEE-EEeCCCCHHHHHHHHHHHccCCCceEEEEe---cC
Q 000994 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYL-RLDGSSTIMDRRDMVRDFQHRSDIFVFLLS---TR 1132 (1196)
Q Consensus 1057 KL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~-rLDGStk~~dR~~~V~dFq~~~di~VfLLS---Tr 1132 (1196)
|...|..+|.. .+.++|||+......+.+.++|...|++.. .++|. +++ +++|.+ +++.|++.+ |.
T Consensus 240 ~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~-----~r~-~~~f~~-g~~~vLvat~s~T~ 309 (414)
T 3oiy_A 240 SKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKV-GKINILIGVQAYYG 309 (414)
T ss_dssp CHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH-----HHH-HHHHHT-TSCSEEEEECCTTC
T ss_pred HHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc-----chH-HHHHhC-CCCeEEEEecCcCc
Confidence 44556666666 368999999999999999999999999998 88884 444 999986 678886665 99
Q ss_pred ccccccCccc-CCEEEEeCCC--CCcchHHHHHHhhhccCCC--CcEEEEEeee
Q 000994 1133 AGGLGINLTA-ADTVIFYESD--WNPTLDLQAMDRAHRLGQT--KDVSSWLKLC 1181 (1196)
Q Consensus 1133 AGGlGINLTa-AdtVIfyDsd--WNPt~d~QAmdRahRiGQt--K~VtVYRLIt 1181 (1196)
+++.|||+.+ .++||+||++ +++....|++||++|.|+. +.-.++-|+.
T Consensus 310 ~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 310 KLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp CCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred hhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 9999999999 9999999999 9999999999999999986 6778888883
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.86 E-value=1.4e-20 Score=229.55 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcccc
Q 000994 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1196)
Q Consensus 1057 KL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGl 1136 (1196)
|+..|..+|... .|.++|||+...+..+.+.++|...|+....+.|+++.++|..+.++|.. +++.| |++|.+.|.
T Consensus 223 ~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~v-lVaT~a~~~ 298 (523)
T 1oyw_A 223 PLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR-DDLQI-VVATVAFGM 298 (523)
T ss_dssp HHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEECTTSCT
T ss_pred HHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc-CCCeE-EEEechhhC
Confidence 444455555443 57899999999999999999999999999999999999999999999987 45665 678899999
Q ss_pred ccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEE
Q 000994 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtV 1176 (1196)
|||+..++.||+||++|++....|++|||+|.|+...+.+
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 9999999999999999999999999999999998766554
No 30
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.85 E-value=2.1e-20 Score=246.11 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=100.2
Q ss_pred HHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccC
Q 000994 1062 DILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR--KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGIN 1139 (1196)
Q Consensus 1062 d~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~r--g~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGIN 1139 (1196)
..++.++ ..|.+|+||+.....++.+.+.|... ++++..++|.++..+|..++.+|.+ +++.| |++|.+++.|||
T Consensus 803 ~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~-g~~~V-LVaT~v~e~GiD 879 (1151)
T 2eyq_A 803 EAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNV-LVCTTIIETGID 879 (1151)
T ss_dssp HHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT-TSCCE-EEESSTTGGGSC
T ss_pred HHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc-CCCcE-EEECCcceeeec
Confidence 3344444 35789999999999999999999877 8899999999999999999999985 56655 778899999999
Q ss_pred cccCCEEEEeCC-CCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1140 LTAADTVIFYES-DWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1140 LTaAdtVIfyDs-dWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
+..+|+||++++ .|++....|++||++|.|+. -++|.++...
T Consensus 880 ip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~--g~~~ll~~~~ 922 (1151)
T 2eyq_A 880 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ--AYAWLLTPHP 922 (1151)
T ss_dssp CTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBC--EEEEEEECCG
T ss_pred ccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCc--eEEEEEECCc
Confidence 999999999999 58999999999999999964 5566666654
No 31
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.83 E-value=2.6e-19 Score=221.07 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=96.7
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeC
Q 000994 1071 ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYE 1150 (1196)
Q Consensus 1071 ~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyD 1150 (1196)
.+.++|||+...+..+.+.++|...|+....+.|.++.++|..++++|.. +++.| |++|.+.|.|||+...+.||+||
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~-g~~~V-lVAT~a~~~GID~p~V~~VI~~~ 343 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA-NEIQV-VVATVAFGMGIDKPDVRFVIHHS 343 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSSSE-EEECTTSCTTCCCSCEEEEEESS
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc-CCCeE-EEEechhhcCCCcccccEEEEeC
Confidence 47899999999999999999999999999999999999999999999986 55655 77899999999999999999999
Q ss_pred CCCCcchHHHHHHhhhccCCCCcEEEE
Q 000994 1151 SDWNPTLDLQAMDRAHRLGQTKDVSSW 1177 (1196)
Q Consensus 1151 sdWNPt~d~QAmdRahRiGQtK~VtVY 1177 (1196)
+++++....|++|||+|.|+...+.++
T Consensus 344 ~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 344 MSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 999999999999999999987655543
No 32
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.82 E-value=1.9e-20 Score=227.62 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccc
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGG 1135 (1196)
.|...|..++... .+.++|||+......+.+..+|...++.+..++|.++.++|+.++++|+. +++.| |++|.+++
T Consensus 343 ~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~-g~~~V-LVaT~~l~ 418 (508)
T 3fho_A 343 HKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV-GTSKV-LVTTNVIA 418 (508)
T ss_dssp HHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS-SSCCC-CEECC---
T ss_pred HHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC-CCCeE-EEeCChhh
Confidence 3455555555443 36799999999999999999999999999999999999999999999976 45554 78999999
Q ss_pred cccCcccCCEEEEeCCC------CCcchHHHHHHhhhccCCCCcEEEEEeee
Q 000994 1136 LGINLTAADTVIFYESD------WNPTLDLQAMDRAHRLGQTKDVSSWLKLC 1181 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDsd------WNPt~d~QAmdRahRiGQtK~VtVYRLIt 1181 (1196)
.|||+..+++||+||++ +++....|++||++|.|+...+.+ |+.
T Consensus 419 ~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~--l~~ 468 (508)
T 3fho_A 419 RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSIN--FVH 468 (508)
T ss_dssp --CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEE--EEC
T ss_pred cCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEE--EEe
Confidence 99999999999999999 788999999999999997665554 455
No 33
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=7.9e-19 Score=216.78 Aligned_cols=121 Identities=19% Similarity=0.335 Sum_probs=103.0
Q ss_pred HHHHHHHHHHh--hCCCeEEEEecchHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCc
Q 000994 1059 QTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNYR---KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1196)
Q Consensus 1059 ~~Ld~LL~~Lk--~~ghKVLIFSQ~t~mlDlLee~L~~r---g~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrA 1133 (1196)
..+..++..+. ..+.++|||+......+.+.++|... ++.+..++|.++.++|..++++|.. +++.| |++|.+
T Consensus 273 ~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~-g~~~v-LVaT~~ 350 (579)
T 3sqw_A 273 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK-DESGI-LVCTDV 350 (579)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-CSSEE-EEECGG
T ss_pred HHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc-CCCeE-EEEcch
Confidence 34444444444 34789999999999999999999876 9999999999999999999999987 55554 778999
Q ss_pred cccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1134 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1134 GGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
++.|||+..+++||+||++|++....|++||++|.|+... ++.|++..
T Consensus 351 ~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~--~i~~~~~~ 398 (579)
T 3sqw_A 351 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS--SVLFICKD 398 (579)
T ss_dssp GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEE--EEEEEEGG
T ss_pred hhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCce--EEEEEccc
Confidence 9999999999999999999999999999999999997644 44466654
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.1e-18 Score=226.64 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=104.8
Q ss_pred HHHHHHHHhhC-CCeEEEEecchHHHHHHHHHHHhCCCc---------------------------------------EE
Q 000994 1061 LDILLKRLRAE-NHRVLLFAQMTKMLNILEDYMNYRKYR---------------------------------------YL 1100 (1196)
Q Consensus 1061 Ld~LL~~Lk~~-ghKVLIFSQ~t~mlDlLee~L~~rg~~---------------------------------------y~ 1100 (1196)
+..++..+... +.++|||+...+..+.+..+|...++. +.
T Consensus 331 l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~ 410 (1010)
T 2xgj_A 331 IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG 410 (1010)
T ss_dssp HHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCee
Confidence 34444444443 469999999999999998888765542 67
Q ss_pred EEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEE----eCC----CCCcchHHHHHHhhhccCCCC
Q 000994 1101 RLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF----YES----DWNPTLDLQAMDRAHRLGQTK 1172 (1196)
Q Consensus 1101 rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf----yDs----dWNPt~d~QAmdRahRiGQtK 1172 (1196)
.+.|+++..+|+.+...|+. +.+.| |++|.+++.|||+.+.+.||. ||. +|+|....|++|||+|.|+..
T Consensus 411 ~~Hggl~~~eR~~ve~~F~~-G~ikV-LVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~ 488 (1010)
T 2xgj_A 411 IHHSGLLPILKEVIEILFQE-GFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDD 488 (1010)
T ss_dssp EESTTSCHHHHHHHHHHHHT-TCCSE-EEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCS
T ss_pred EECCCCCHHHHHHHHHHHhc-CCCcE-EEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCC
Confidence 89999999999999999986 67776 778899999999999999998 999 999999999999999999999
Q ss_pred cEEEEEeeeCCc
Q 000994 1173 DVSSWLKLCHLF 1184 (1196)
Q Consensus 1173 ~VtVYRLIt~gT 1184 (1196)
..+||.|++.+.
T Consensus 489 ~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 489 RGIVIMMIDEKM 500 (1010)
T ss_dssp SEEEEEEECSCC
T ss_pred ceEEEEEECCCC
Confidence 999999998773
No 35
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.81 E-value=3.7e-18 Score=209.66 Aligned_cols=111 Identities=21% Similarity=0.318 Sum_probs=98.6
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEE
Q 000994 1070 AENHRVLLFAQMTKMLNILEDYMNYR---KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTV 1146 (1196)
Q Consensus 1070 ~~ghKVLIFSQ~t~mlDlLee~L~~r---g~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtV 1146 (1196)
..+.++|||+......+.+.++|... ++.+..++|.++.++|..++++|.. +.+.| |++|.+.+.|||+.++++|
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~v-LvaT~~~~~GiDip~v~~V 414 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK-DESGI-LVCTDVGARGMDFPNVHEV 414 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-CSSEE-EEECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc-CCCCE-EEEcchhhcCCCcccCCEE
Confidence 35789999999999999999999876 9999999999999999999999987 45554 7889999999999999999
Q ss_pred EEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1147 IFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1147 IfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
|+||+++++....|++||++|.|+.. .++.|++..-
T Consensus 415 I~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~e 450 (563)
T 3i5x_A 415 LQIGVPSELANYIHRIGRTARSGKEG--SSVLFICKDE 450 (563)
T ss_dssp EEESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGGG
T ss_pred EEECCCCchhhhhhhcCccccCCCCc--eEEEEEchhH
Confidence 99999999999999999999999654 4455666553
No 36
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=218.30 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCC
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1196)
+.++|||++.....+.+.++|...++.+..++|.++..+|..+++.|.. +.+.| |++|.+++.|||+.++++||.||+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~-g~~~i-Lv~T~~~~~GlDip~v~~VI~~d~ 410 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE-GKEKV-LVTTNVCARGIDVEQVSVVINFDL 410 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHc-CCCcE-EEEccccccCCccccCCEEEEecC
Confidence 4589999999999999999999999999999999999999999999986 45555 789999999999999999999999
Q ss_pred CCCc------chHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1152 DWNP------TLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1152 dWNP------t~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
+|++ ....|++||++|.|+...+ +.|+...
T Consensus 411 p~~~~~~~s~~~~~Qr~GRagR~g~~G~~--i~~~~~~ 446 (479)
T 3fmp_B 411 PVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDSK 446 (479)
T ss_dssp --------------------------------------
T ss_pred CCCCccCCCHHHHHHHhcccccCCCCceE--EEEEcCc
Confidence 9987 5889999999999976544 4455543
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.78 E-value=7.1e-19 Score=222.18 Aligned_cols=154 Identities=16% Similarity=0.212 Sum_probs=108.1
Q ss_pred cCcHHHHHHHHHHHHhhhcC--CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCC--
Q 000994 436 SLKEYQLKGLQWLVNCYEQG--LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCP-- 510 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~--~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p-- 510 (1196)
.|+++|.+++..+......+ .+.++..++|.|||+.++..+......+ ..+||++|. .+..||.+++.++++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 78999999999998766554 3789999999999999877665554332 579999996 567789999999986
Q ss_pred CCccccccCChhhHH--HHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHH
Q 000994 511 DLKTLPYWGGLQERM--VLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLL 588 (1196)
Q Consensus 511 ~l~v~~y~G~~~~r~--~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~ 588 (1196)
++++..++|+..... .....+ ..+..+|+|+|++.+... +.-.++++||+||+|++.... ...+.
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l-------~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q---r~~l~ 511 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGL-------RNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ---REALM 511 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHH-------HSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCC
T ss_pred CceEEEEeCCCCHHHHHHHHHHH-------hcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH---HHHHH
Confidence 577888888754322 111111 124578999999987543 223467999999999983321 11111
Q ss_pred h-ccccceEEeecCCCCC
Q 000994 589 S-FNCRNRLLLTGTPIQN 605 (1196)
Q Consensus 589 ~-l~~~~RllLTGTPiqN 605 (1196)
. ....+.+++||||+.+
T Consensus 512 ~~~~~~~vL~mSATp~p~ 529 (780)
T 1gm5_A 512 NKGKMVDTLVMSATPIPR 529 (780)
T ss_dssp SSSSCCCEEEEESSCCCH
T ss_pred HhCCCCCEEEEeCCCCHH
Confidence 1 1356789999999753
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.75 E-value=3.6e-17 Score=206.45 Aligned_cols=117 Identities=18% Similarity=0.110 Sum_probs=100.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhC------------------------------CCcEEEEeCCCCHHHHHHHHHHHc
Q 000994 1070 AENHRVLLFAQMTKMLNILEDYMNYR------------------------------KYRYLRLDGSSTIMDRRDMVRDFQ 1119 (1196)
Q Consensus 1070 ~~ghKVLIFSQ~t~mlDlLee~L~~r------------------------------g~~y~rLDGStk~~dR~~~V~dFq 1119 (1196)
..+.++|||+...+..+.+...|... ++....+.|+++.++|+.+.+.|.
T Consensus 240 ~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 319 (702)
T 2p6r_A 240 AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFR 319 (702)
T ss_dssp HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHH
T ss_pred hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHH
Confidence 46789999999888888777777532 134566999999999999999998
Q ss_pred cCCCceEEEEecCccccccCcccCCEEEE----eC---CCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHH
Q 000994 1120 HRSDIFVFLLSTRAGGLGINLTAADTVIF----YE---SDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSM 1188 (1196)
Q Consensus 1120 ~~~di~VfLLSTrAGGlGINLTaAdtVIf----yD---sdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEEr 1188 (1196)
. +.+.| |++|.+.+.|||+.+.+.||. || .+++++...|++|||+|.|+.++-.+|+|++....+..
T Consensus 320 ~-g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~ 393 (702)
T 2p6r_A 320 R-GNIKV-VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIA 393 (702)
T ss_dssp T-TSCCE-EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHH
T ss_pred C-CCCeE-EEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHH
Confidence 6 56666 778999999999999999998 77 68899999999999999999999999999999886653
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.74 E-value=2.1e-16 Score=199.83 Aligned_cols=116 Identities=19% Similarity=0.108 Sum_probs=97.6
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhCC------------------------------------CcEEEEeCCCCHHHHHH
Q 000994 1070 AENHRVLLFAQMTKMLNILEDYMNYRK------------------------------------YRYLRLDGSSTIMDRRD 1113 (1196)
Q Consensus 1070 ~~ghKVLIFSQ~t~mlDlLee~L~~rg------------------------------------~~y~rLDGStk~~dR~~ 1113 (1196)
..+.+||||+...+..+.+...|.... +.+..+.|+++.++|+.
T Consensus 250 ~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~ 329 (715)
T 2va8_A 250 SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDL 329 (715)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHH
Confidence 468899999999999988888887542 34788999999999999
Q ss_pred HHHHHccCCCceEEEEecCccccccCcccCCEEEE----eC-------CCCCcchHHHHHHhhhccCCCCcEEEEEeeeC
Q 000994 1114 MVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF----YE-------SDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCH 1182 (1196)
Q Consensus 1114 ~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf----yD-------sdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~ 1182 (1196)
+.+.|.. +.+.| |++|.+.+.|||+.+.+.||. || .+++++...|++|||+|.|+.++-.+|+|++.
T Consensus 330 v~~~f~~-g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 330 IEEGFRQ-RKIKV-IVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp HHHHHHT-TCSCE-EEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred HHHHHHc-CCCeE-EEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCC
Confidence 9999986 56766 778899999999999999998 99 79999999999999999999999999999988
Q ss_pred Cc-HHH
Q 000994 1183 LF-IFS 1187 (1196)
Q Consensus 1183 gT-IEE 1187 (1196)
.. +++
T Consensus 408 ~~~~~~ 413 (715)
T 2va8_A 408 KEDVDR 413 (715)
T ss_dssp GGGHHH
T ss_pred chHHHH
Confidence 76 443
No 40
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.74 E-value=1.9e-16 Score=205.71 Aligned_cols=130 Identities=18% Similarity=0.115 Sum_probs=106.1
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCC--------------------------------------
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKY-------------------------------------- 1097 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~-------------------------------------- 1097 (1196)
.++..|...|... .+.++|||+...+..+.+..+|...++
T Consensus 322 ~~~~~li~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 322 KTWPEIVNYLRKR--ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp THHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 3455555555442 357999999999999999998876665
Q ss_pred -cEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCCCC---------CcchHHHHHHhhhc
Q 000994 1098 -RYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDW---------NPTLDLQAMDRAHR 1167 (1196)
Q Consensus 1098 -~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdW---------NPt~d~QAmdRahR 1167 (1196)
++..++|.++..+|..+...|+. +.+.| |++|.+.+.|||+.+ .+||+++..+ ++....|.+|||+|
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~-G~~kV-LvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR 476 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSK-GFIKV-LFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGR 476 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHT-TCCSE-EEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCC
T ss_pred cCeeeecCCCCHHHHHHHHHHHHC-CCCcE-EEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhccccc
Confidence 47889999999999999999986 56666 778999999999999 8888866554 89999999999999
Q ss_pred cCCCCcEEEEEeeeCCcHHHHHh
Q 000994 1168 LGQTKDVSSWLKLCHLFIFSMIG 1190 (1196)
Q Consensus 1168 iGQtK~VtVYRLIt~gTIEErIl 1190 (1196)
.|+...-+||.+...+..++.++
T Consensus 477 ~G~~~~G~vi~l~~~~~~~~~~~ 499 (997)
T 4a4z_A 477 RGLDSTGTVIVMAYNSPLSIATF 499 (997)
T ss_dssp TTTCSSEEEEEECCSSCCCHHHH
T ss_pred CCCCcceEEEEecCCCcchHHHH
Confidence 99999999999997665555443
No 41
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.74 E-value=6.8e-17 Score=211.78 Aligned_cols=123 Identities=16% Similarity=0.134 Sum_probs=100.5
Q ss_pred HHHHHHHHhhC-CCeEEEEecchHHHHHHHHHHHhCCCc---------------------------------------EE
Q 000994 1061 LDILLKRLRAE-NHRVLLFAQMTKMLNILEDYMNYRKYR---------------------------------------YL 1100 (1196)
Q Consensus 1061 Ld~LL~~Lk~~-ghKVLIFSQ~t~mlDlLee~L~~rg~~---------------------------------------y~ 1100 (1196)
+..++..+... +.++|||+......+.+...|...++. +.
T Consensus 429 l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~ 508 (1108)
T 3l9o_A 429 IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG 508 (1108)
T ss_dssp HHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCee
Confidence 33444444443 569999999999999888887543332 68
Q ss_pred EEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeCCCCCcch--------HHHHHHhhhccCCCC
Q 000994 1101 RLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTL--------DLQAMDRAHRLGQTK 1172 (1196)
Q Consensus 1101 rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~--------d~QAmdRahRiGQtK 1172 (1196)
.+.|.++..+|..+...|.. +.+.| |++|.+.+.|||+.+.++||.++..||+.. ..|++|||+|.|+..
T Consensus 509 ~~Hg~l~~~~R~~v~~~F~~-G~ikV-LVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~ 586 (1108)
T 3l9o_A 509 IHHSGLLPILKEVIEILFQE-GFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDD 586 (1108)
T ss_dssp EECSCSCHHHHHHHHHHHHH-TCCCE-EEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCS
T ss_pred eecCCCCHHHHHHHHHHHhC-CCCeE-EEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCC
Confidence 89999999999999999986 66766 678899999999999999999999888765 889999999999999
Q ss_pred cEEEEEeeeCCcH
Q 000994 1173 DVSSWLKLCHLFI 1185 (1196)
Q Consensus 1173 ~VtVYRLIt~gTI 1185 (1196)
..+||.++..+..
T Consensus 587 ~G~~ill~~~~~~ 599 (1108)
T 3l9o_A 587 RGIVIMMIDEKME 599 (1108)
T ss_dssp SEEEEEEECCCCC
T ss_pred ceEEEEEecCCcC
Confidence 9999999988743
No 42
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.74 E-value=5.3e-17 Score=205.54 Aligned_cols=116 Identities=15% Similarity=0.037 Sum_probs=99.7
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhC---------------------------------CCcEEEEeCCCCHHHHHHHHH
Q 000994 1070 AENHRVLLFAQMTKMLNILEDYMNYR---------------------------------KYRYLRLDGSSTIMDRRDMVR 1116 (1196)
Q Consensus 1070 ~~ghKVLIFSQ~t~mlDlLee~L~~r---------------------------------g~~y~rLDGStk~~dR~~~V~ 1116 (1196)
..++++|||+...+..+.+...|... .+.+..+.|+++.++|+.+.+
T Consensus 235 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 314 (720)
T 2zj8_A 235 RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEE 314 (720)
T ss_dssp HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 45788999998888877777777542 134788999999999999999
Q ss_pred HHccCCCceEEEEecCccccccCcccCCEEEE----eC----CCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHH
Q 000994 1117 DFQHRSDIFVFLLSTRAGGLGINLTAADTVIF----YE----SDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFS 1187 (1196)
Q Consensus 1117 dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf----yD----sdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEE 1187 (1196)
.|.. +.+.| |++|.+.+.|||+.+.+.||. || .+++++...|++|||+|.|+.+.-.+|.|++....+.
T Consensus 315 ~f~~-g~~~v-lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 315 NFRK-GIIKA-VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHHT-TSSCE-EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHHC-CCCeE-EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 9986 56766 678899999999999999998 88 6889999999999999999999999999999988664
No 43
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.72 E-value=1e-17 Score=187.88 Aligned_cols=163 Identities=15% Similarity=0.160 Sum_probs=121.3
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCCC--
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPD-- 511 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p~-- 511 (1196)
.+|+|||.+++.+++. +.++||+++||+|||+++++++....... .+++|||||. .++.||.+++.+|...
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 4899999999998875 35789999999999999988877665432 2589999996 7888999999999643
Q ss_pred CccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhc-
Q 000994 512 LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF- 590 (1196)
Q Consensus 512 l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l- 590 (1196)
..+..+.|+..... ......+|+|+||+.+......+ ..++++||+||||++.+. .....+..+
T Consensus 186 ~~~~~~~~~~~~~~------------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~ 250 (282)
T 1rif_A 186 AMIKKIGGGASKDD------------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLN 250 (282)
T ss_dssp GGEEECSTTCSSTT------------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCT
T ss_pred ceEEEEeCCCcchh------------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhh
Confidence 34444444321110 11245789999999987764432 236899999999999864 344455555
Q ss_pred cccceEEeecCCCCCChHHHHHHHHhhCC
Q 000994 591 NCRNRLLLTGTPIQNNMAELWALLHFIMP 619 (1196)
Q Consensus 591 ~~~~RllLTGTPiqN~l~EL~sLL~FL~P 619 (1196)
++.++++|||||. |...+++.+..+++|
T Consensus 251 ~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 251 NCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp TCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred cCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 6889999999995 556788888888765
No 44
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.68 E-value=3.7e-15 Score=192.99 Aligned_cols=156 Identities=20% Similarity=0.197 Sum_probs=108.4
Q ss_pred ccCcHHHHHHHHHHHHhhhc----------CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC-CccHHHHHH
Q 000994 435 GSLKEYQLKGLQWLVNCYEQ----------GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWAD 503 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~----------~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P-~sll~nW~~ 503 (1196)
..|+|||..++.+++..... +.+|++.+.+|+|||++++.++..+ ...+...++||||| ..|..||.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll-~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLA-TELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHH-TTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHH-HhcCCCceEEEEeCcHHHHHHHHH
Confidence 36999999999999876532 3579999999999999997666433 33233358999999 778899999
Q ss_pred HHHHhCCCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh---h-hccCccEEEECCCccccCc
Q 000994 504 EISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY---F-RRVKWQYMVLDEAQAIKSS 579 (1196)
Q Consensus 504 Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~---l-~~~~w~~VIlDEAH~iKn~ 579 (1196)
+|.+|.+.. +..+.. +..+...+ .....+|+|+|++.+...... + .--.+.+||+||||+....
T Consensus 349 ~f~~f~~~~---v~~~~s--~~~l~~~L-------~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~ 416 (1038)
T 2w00_A 349 EYQRFSPDS---VNGSEN--TAGLKRNL-------DKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG 416 (1038)
T ss_dssp HHHTTSTTC---SSSSCC--CHHHHHHH-------HCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH
T ss_pred HHHHhcccc---cccccC--HHHHHHHh-------cCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch
Confidence 999998651 222211 11111111 013568999999999764321 1 1126899999999997532
Q ss_pred ccHHHHHH-HhccccceEEeecCCCCC
Q 000994 580 NSIRWKTL-LSFNCRNRLLLTGTPIQN 605 (1196)
Q Consensus 580 ~S~~~kal-~~l~~~~RllLTGTPiqN 605 (1196)
..++.+ ..++...+++|||||+..
T Consensus 417 --~~~~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 417 --EAQKNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp --HHHHHHHHHCSSEEEEEEESSCCCS
T ss_pred --HHHHHHHHhCCcccEEEEeCCcccc
Confidence 234444 456778899999999863
No 45
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.65 E-value=9.3e-16 Score=158.06 Aligned_cols=127 Identities=18% Similarity=0.273 Sum_probs=113.3
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
+..+.|+..|..+|... .+.++|||++.....+.+.++|...|+.+..++|+++..+|..++++|+. +.+.| |++|
T Consensus 17 ~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~v-lv~T 92 (163)
T 2hjv_A 17 VREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR-GEYRY-LVAT 92 (163)
T ss_dssp CCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEEC
T ss_pred CChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEEC
Confidence 34578999999999874 57799999999999999999999999999999999999999999999986 45665 6788
Q ss_pred CccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1132 RAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
.+++.|||++.+++||+||++|||....|++||++|.||+..+ |.|++...
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~~ 143 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAFE 143 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGGG
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHHH
Confidence 9999999999999999999999999999999999999987654 55666553
No 46
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.64 E-value=1.1e-15 Score=159.18 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=112.7
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
+..+.|+..|..+|... .+.++|||++.....+.+.++|...|+++..++|.++..+|..++++|++ +.+.| |++|
T Consensus 13 ~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~v-LvaT 88 (172)
T 1t5i_A 13 LKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD-FQRRI-LVAT 88 (172)
T ss_dssp CCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEES
T ss_pred CChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC-CCCcE-EEEC
Confidence 34578999999999875 46799999999999999999999999999999999999999999999986 56666 6788
Q ss_pred CccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1132 RAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
.+++.|||++.+++||+||++|||....|++||++|.||+..+ +.|++..
T Consensus 89 ~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~ 138 (172)
T 1t5i_A 89 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSDE 138 (172)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECSH
T ss_pred CchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEE--EEEEcCh
Confidence 9999999999999999999999999999999999999987654 4466543
No 47
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.64 E-value=9.5e-16 Score=168.02 Aligned_cols=141 Identities=21% Similarity=0.300 Sum_probs=108.6
Q ss_pred hccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCCCC
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPDL 512 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p~l 512 (1196)
...|+|||.+++.+++ .+.++|+++++|+|||+++++++..+ .+++|||||. .++.||.+++.+| +.
T Consensus 91 ~~~l~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~--~~ 158 (237)
T 2fz4_A 91 EISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (237)
T ss_dssp CCCCCHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--CG
T ss_pred CCCcCHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--CC
Confidence 4589999999998766 34569999999999999999887654 2689999997 7788999999995 44
Q ss_pred c-cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhcc
Q 000994 513 K-TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFN 591 (1196)
Q Consensus 513 ~-v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~ 591 (1196)
+ +..+.|... ...+|+|+||+.+......+. -.|++||+||+|++.+.. ..+.+..++
T Consensus 159 ~~v~~~~g~~~------------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~ 217 (237)
T 2fz4_A 159 EYVGEFSGRIK------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQMSI 217 (237)
T ss_dssp GGEEEESSSCB------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHHTCC
T ss_pred CeEEEEeCCCC------------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHHhcc
Confidence 5 666666432 235799999999987766543 369999999999997653 334455668
Q ss_pred ccceEEeecCCCCCCh
Q 000994 592 CRNRLLLTGTPIQNNM 607 (1196)
Q Consensus 592 ~~~RllLTGTPiqN~l 607 (1196)
..++++|||||.+++-
T Consensus 218 ~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 218 APFRLGLTATFEREDG 233 (237)
T ss_dssp CSEEEEEEESCC----
T ss_pred CCEEEEEecCCCCCCC
Confidence 8999999999998764
No 48
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.63 E-value=7.8e-16 Score=162.28 Aligned_cols=128 Identities=19% Similarity=0.267 Sum_probs=99.8
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
+..+.|+..|.++|.... .+.++|||++.....+.+.++|...|+.+..++|+++..+|..++++|+. +.+.| |++|
T Consensus 27 v~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~-g~~~v-LvaT 103 (185)
T 2jgn_A 27 VEESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS-GKSPI-LVAT 103 (185)
T ss_dssp CCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH-TSSSE-EEEE
T ss_pred eCcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEEc
Confidence 356889999999998853 57899999999999999999999999999999999999999999999986 55665 6788
Q ss_pred CccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1132 RAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
.++|.|||++.+++||+||++|||....|++||++|.||+. .++.|++...
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~~ 154 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNERN 154 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCE--EEEEEECGGG
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCc--EEEEEEchhh
Confidence 99999999999999999999999999999999999999864 4566676543
No 49
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.62 E-value=2.2e-14 Score=188.13 Aligned_cols=129 Identities=19% Similarity=0.362 Sum_probs=95.0
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhC-CCCc
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFC-PDLK 513 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~-p~l~ 513 (1196)
.+.|+|.+++..++ .|.+.|+...+|.|||+..+..+...... .+.+|||+|. .+..|+.+.+.+|. .+++
T Consensus 78 ~pt~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~~~---~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~ 150 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLARK---GKKSALVFPTVTLVKQTLERLQKLADEKVK 150 (1104)
T ss_dssp CCCHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHHTT---TCCEEEEESSHHHHHHHHHHHHTTSCTTSC
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHHhc---CCeEEEEechHHHHHHHHHHHHHhhCCCCe
Confidence 57899999998776 57789999999999999665555444422 2579999995 56789999999976 4568
Q ss_pred cccccCChhh--HHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccC
Q 000994 514 TLPYWGGLQE--RMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKS 578 (1196)
Q Consensus 514 v~~y~G~~~~--r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn 578 (1196)
+..++|+... +......+ ..+.++|+|+|.+.+......+..-.+++||+||||++..
T Consensus 151 v~~l~Gg~~~~er~~~~~~l-------~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~ 210 (1104)
T 4ddu_A 151 IFGFYSSMKKEEKEKFEKSF-------EEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLK 210 (1104)
T ss_dssp EEEECTTCCTTHHHHHHHHH-------HTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTT
T ss_pred EEEEeCCCCHHHHHHHHHHH-------hCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCcccc
Confidence 8888886543 11111111 1134789999999997766656666899999999998754
No 50
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.61 E-value=3.2e-15 Score=154.26 Aligned_cols=126 Identities=16% Similarity=0.222 Sum_probs=109.0
Q ss_pred cc-HHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCc
Q 000994 1055 SG-KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1196)
Q Consensus 1055 Sg-KL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrA 1133 (1196)
+. |+..|..+|... .+.++|||++.....+.+.++|...|+.+..++|+++..+|..++++|+. +.+.| |++|.+
T Consensus 14 ~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-lv~T~~ 89 (165)
T 1fuk_A 14 EEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-GSSRI-LISTDL 89 (165)
T ss_dssp GGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEEEGG
T ss_pred chhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc-CCCEE-EEEcCh
Confidence 44 999999999885 56899999999999999999999999999999999999999999999986 56666 678899
Q ss_pred cccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHH
Q 000994 1134 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIF 1186 (1196)
Q Consensus 1134 GGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIE 1186 (1196)
++.|||++.+++||+||++||+....|++||++|.||+. .+|.|++.+..+
T Consensus 90 ~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~~~~~~~~~ 140 (165)
T 1fuk_A 90 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG--VAINFVTNEDVG 140 (165)
T ss_dssp GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----C--EEEEEEETTTHH
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc--eEEEEEcchHHH
Confidence 999999999999999999999999999999999999766 456678877643
No 51
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=159.40 Aligned_cols=124 Identities=18% Similarity=0.247 Sum_probs=107.2
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
..+.|+..|.++|.. .+.++|||++.....+.+.++|...|+++..++|+++.++|..++++|+. +++.| |++|.
T Consensus 38 ~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~v-LvaT~ 112 (191)
T 2p6n_A 38 KEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE-GKKDV-LVATD 112 (191)
T ss_dssp CGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHH-TSCSE-EEECH
T ss_pred ChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-CCCEE-EEEcC
Confidence 456788888777654 46799999999999999999999999999999999999999999999986 45655 77889
Q ss_pred ccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1133 AGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1133 AGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
+++.|||++.+++||+||++|||....|++||++|.||+.. ++.|++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~--~i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGI--ATTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCE--EEEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcE--EEEEEcCc
Confidence 99999999999999999999999999999999999999774 45567754
No 52
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=148.82 Aligned_cols=126 Identities=17% Similarity=0.193 Sum_probs=106.9
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
..|+..|..+|..+ .+.++|||++.....+.+..+|...|+.+..++|+++..+|..++++|++ +.+.| |++|.++
T Consensus 19 ~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~-g~~~v-LvaT~~~ 94 (175)
T 2rb4_A 19 KDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD-GKEKV-LITTNVC 94 (175)
T ss_dssp HHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT-TSCSE-EEECCSC
T ss_pred HhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEEecch
Confidence 34899888888765 46799999999999999999999999999999999999999999999986 55665 7788999
Q ss_pred ccccCcccCCEEEEeCCC------CCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHH
Q 000994 1135 GLGINLTAADTVIFYESD------WNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIF 1186 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsd------WNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIE 1186 (1196)
+.|||++.+++||+||++ |++....|++||++|.|+. -.+|.|++.+..+
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDELP 150 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGGHH
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccchHH
Confidence 999999999999999999 5557788999999999954 5778888887643
No 53
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.52 E-value=1.6e-13 Score=179.73 Aligned_cols=126 Identities=20% Similarity=0.272 Sum_probs=90.8
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCCC--C
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPD--L 512 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p~--l 512 (1196)
.+ |+|.+++..++ .|.+.|+..++|.|||+.++.++..+... ...+|||+|. .+..|+.+.+.++++. +
T Consensus 57 ~p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl~~lp~l~~~~~~---~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 57 PR-AIQKMWAKRIL----RKESFAATAPTGVGKTSFGLAMSLFLALK---GKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp CC-HHHHHHHHHHH----TTCCEECCCCBTSCSHHHHHHHHHHHHTT---SCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred CH-HHHHHHHHHHH----hCCCEEEEcCCCCCHHHHHHHHHHHHhhc---CCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 37 99999998777 67789999999999998555555554432 2579999995 5677899999998764 3
Q ss_pred ----ccccccCChhhHHH--HhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcc
Q 000994 513 ----KTLPYWGGLQERMV--LRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSN 580 (1196)
Q Consensus 513 ----~v~~y~G~~~~r~~--l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~ 580 (1196)
++..++|+...... ....+ ...+|+|+|.+.+......|. .+++||+||||++-+..
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~~l---------~~~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~ 191 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQNL---------RNFKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKAS 191 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHHSG---------GGCSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTST
T ss_pred CccceEEEEeCCCChhhHHHHHhhc---------cCCCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhcc
Confidence 56677776433221 11111 127899999999987654443 68899999999987643
No 54
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.27 E-value=1.1e-15 Score=158.48 Aligned_cols=123 Identities=18% Similarity=0.256 Sum_probs=109.6
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
+.|+..|..+|... .+.++|||++.....+.+.++|...|+.+..++|+++..+|..++++|++ +.+. +|++|.++
T Consensus 15 ~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~-g~~~-vLvaT~~~ 90 (170)
T 2yjt_D 15 EHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE-GRVN-VLVATDVA 90 (170)
Confidence 67999998888763 46899999999999999999999999999999999999999999999986 4555 57889999
Q ss_pred ccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
+.|||++.+++||+||++|||....|++||++|.||+..|.+ |++..
T Consensus 91 ~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~--~~~~~ 137 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS--LVEAH 137 (170)
Confidence 999999999999999999999999999999999999776543 45443
No 55
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.49 E-value=4.6e-14 Score=150.44 Aligned_cols=133 Identities=19% Similarity=0.240 Sum_probs=91.2
Q ss_pred hccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcc---cCCcEEEEeCC-ccHHH-HHHHHHHh
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKN---IWGPFLVVAPA-SVLNN-WADEISRF 508 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~---~~gp~LIV~P~-sll~n-W~~Ei~k~ 508 (1196)
...|+|||.+++.+++ .+.++++..++|.|||++++..+........ ..+++|||||. .++.| |.+++.+|
T Consensus 31 ~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 3479999999999887 4678999999999999999888776543321 23689999997 56678 99999998
Q ss_pred CC-CCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh--------hhccCccEEEECCCccccCc
Q 000994 509 CP-DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY--------FRRVKWQYMVLDEAQAIKSS 579 (1196)
Q Consensus 509 ~p-~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~--------l~~~~w~~VIlDEAH~iKn~ 579 (1196)
.+ .+++..+.|+......... .....+|+|+||+.+...... +....|++||+||||++...
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~---------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPE---------VVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHH---------HHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC------
T ss_pred hccCceEEEEeCCcccchhHHh---------hccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC
Confidence 75 4677777775432211100 012467999999998765432 22347899999999999643
No 56
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.48 E-value=1.8e-13 Score=147.18 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=110.6
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhC---CC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFC---PD 511 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~---p~ 511 (1196)
.++|||.+++..+. ++.++++..++|.|||+.++..+...........++|||||. .+..||.+++.++. |+
T Consensus 36 ~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 48999999998887 467899999999999998776665543332222479999996 77889999999986 46
Q ss_pred CccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh--hhccCccEEEECCCccccCccc---HHHHH
Q 000994 512 LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY--FRRVKWQYMVLDEAQAIKSSNS---IRWKT 586 (1196)
Q Consensus 512 l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~--l~~~~w~~VIlDEAH~iKn~~S---~~~ka 586 (1196)
+++..++|+.......... .....+|+|+|++.+...... +.--.++++|+||||++..... .....
T Consensus 112 ~~v~~~~g~~~~~~~~~~~--------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i 183 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEEVL--------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEI 183 (220)
T ss_dssp CCEEEESCCSCHHHHHHHH--------HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHH
T ss_pred ceEEEEeCCCChHHHHHHH--------hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHH
Confidence 7888888864432221111 013468999999998654321 2234679999999999854211 12222
Q ss_pred HHhcc-ccceEEeecCCCCCChHHH
Q 000994 587 LLSFN-CRNRLLLTGTPIQNNMAEL 610 (1196)
Q Consensus 587 l~~l~-~~~RllLTGTPiqN~l~EL 610 (1196)
+..+. ....+++||||-. .+.++
T Consensus 184 ~~~~~~~~~~i~~SAT~~~-~~~~~ 207 (220)
T 1t6n_A 184 FRMTPHEKQVMMFSATLSK-EIRPV 207 (220)
T ss_dssp HHTSCSSSEEEEEESCCCT-TTHHH
T ss_pred HHhCCCcCeEEEEEeecCH-HHHHH
Confidence 23333 4567999999944 44443
No 57
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.48 E-value=2e-13 Score=145.04 Aligned_cols=160 Identities=19% Similarity=0.154 Sum_probs=110.6
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHh---cccCCcEEEEeCC-ccHHHHHHHHHHhCCC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEE---KNIWGPFLVVAPA-SVLNNWADEISRFCPD 511 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~---~~~~gp~LIV~P~-sll~nW~~Ei~k~~p~ 511 (1196)
.++|||.+++.++. ++.++++..++|.|||++++..+...... ......+|||||. .+..||.+++.++.+.
T Consensus 23 ~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 68999999999887 56789999999999999865544433221 1123579999997 7788999999999988
Q ss_pred CccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh--hhhccCccEEEECCCccccCcc--cHHHHHH
Q 000994 512 LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK--YFRRVKWQYMVLDEAQAIKSSN--SIRWKTL 587 (1196)
Q Consensus 512 l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~--~l~~~~w~~VIlDEAH~iKn~~--S~~~kal 587 (1196)
+++..++|+.......... ....+|+|+|++.+..... .+.--.+++||+||||++.+.. ......+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~---------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~ 169 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEAL---------LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALL 169 (207)
T ss_dssp SCEEEECSSSCSHHHHHHH---------HHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHH
T ss_pred ceEEEEECCCChHHHHHHh---------hCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHH
Confidence 8888888764432221111 1246899999998865432 1223468999999999885432 2233333
Q ss_pred Hhcc-ccceEEeecCCCCCChHH
Q 000994 588 LSFN-CRNRLLLTGTPIQNNMAE 609 (1196)
Q Consensus 588 ~~l~-~~~RllLTGTPiqN~l~E 609 (1196)
..++ ....+++||||- +.+.+
T Consensus 170 ~~~~~~~~~i~~SAT~~-~~~~~ 191 (207)
T 2gxq_A 170 SATPPSRQTLLFSATLP-SWAKR 191 (207)
T ss_dssp HTSCTTSEEEEECSSCC-HHHHH
T ss_pred HhCCccCeEEEEEEecC-HHHHH
Confidence 3343 456799999983 33444
No 58
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.48 E-value=2.4e-13 Score=146.28 Aligned_cols=126 Identities=17% Similarity=0.193 Sum_probs=112.3
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
..+.|+.+|..++... .+.++|||+......+.+.+.|...|+....++|+++.++|..+++.|+. +.+.| |++|.
T Consensus 14 ~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~-g~~~v-lvaT~ 89 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ-GEVRV-LVATD 89 (212)
T ss_dssp CTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS-SSCCE-EEECT
T ss_pred CHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC-CCCeE-EEecC
Confidence 4478999999999854 47799999999999999999999999999999999999999999999986 55666 77899
Q ss_pred ccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1133 AGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1133 AGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
+++.|||+..+++||+||++|++....|++||++|.|+. -.+|.|++...
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~--g~~~~l~~~~~ 139 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPRE 139 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC----BEEEEEECGGG
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCC--CeEEEEEchhH
Confidence 999999999999999999999999999999999999976 46677887664
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.41 E-value=1.2e-12 Score=142.00 Aligned_cols=152 Identities=21% Similarity=0.184 Sum_probs=106.9
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHH-HHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhC---C
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMA-FLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFC---P 510 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIa-ll~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~---p 510 (1196)
.++|||.+++..+. .+.++|+..++|.|||+..+. ++..+... .....+|||||. .+..||.+++.++. +
T Consensus 46 ~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 120 (230)
T 2oxc_A 46 RPSPVQLKAIPLGR----CGLDLIVQAKSGTGKTCVFSTIALDSLVLE-NLSTQILILAPTREIAVQIHSVITAIGIKME 120 (230)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 58999999998876 577899999999999998543 44443322 223589999996 77889999999986 3
Q ss_pred CCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh--hhhccCccEEEECCCccccCcc---cHHHH
Q 000994 511 DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK--YFRRVKWQYMVLDEAQAIKSSN---SIRWK 585 (1196)
Q Consensus 511 ~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~--~l~~~~w~~VIlDEAH~iKn~~---S~~~k 585 (1196)
++++..++|+......... ....+|+|+|++.+..... .+.--.++++|+||||++-+.+ .....
T Consensus 121 ~~~~~~~~g~~~~~~~~~~----------~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~ 190 (230)
T 2oxc_A 121 GLECHVFIGGTPLSQDKTR----------LKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINW 190 (230)
T ss_dssp TCCEEEECTTSCHHHHHHH----------TTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHH
T ss_pred CceEEEEeCCCCHHHHHHh----------ccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHH
Confidence 6788888876443322111 1357899999999865422 2223367899999999985432 23333
Q ss_pred HHHhcc-ccceEEeecCC
Q 000994 586 TLLSFN-CRNRLLLTGTP 602 (1196)
Q Consensus 586 al~~l~-~~~RllLTGTP 602 (1196)
.+..++ ....+++|||+
T Consensus 191 i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 191 IYSSLPASKQMLAVSATY 208 (230)
T ss_dssp HHHHSCSSCEEEEEESCC
T ss_pred HHHhCCCCCeEEEEEecc
Confidence 444454 45679999996
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.41 E-value=1.4e-12 Score=138.55 Aligned_cols=155 Identities=19% Similarity=0.146 Sum_probs=106.9
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCC---C
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCP---D 511 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p---~ 511 (1196)
.++|||.+++..+. .+.++++..++|.|||+.++..+...........++|||||. .+..||.+++.++.. +
T Consensus 25 ~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 68999999998877 567899999999999987765444332222222479999995 667899999998864 6
Q ss_pred CccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh--hhhccCccEEEECCCccccCccc--HHHHHH
Q 000994 512 LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK--YFRRVKWQYMVLDEAQAIKSSNS--IRWKTL 587 (1196)
Q Consensus 512 l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~--~l~~~~w~~VIlDEAH~iKn~~S--~~~kal 587 (1196)
.++..+.|+.......... ....+|+|+|++.+..... .+.--.++++|+||||++....- .....+
T Consensus 101 ~~~~~~~g~~~~~~~~~~~---------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~ 171 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMRL---------DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDII 171 (206)
T ss_dssp CCEEEECSSSCHHHHHHHT---------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHH
T ss_pred ceEEEEeCCccHHHHHHhc---------CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHH
Confidence 6777777765443322211 1457899999999865432 11223678999999998865332 222333
Q ss_pred Hhcc-ccceEEeecCCC
Q 000994 588 LSFN-CRNRLLLTGTPI 603 (1196)
Q Consensus 588 ~~l~-~~~RllLTGTPi 603 (1196)
..++ ....+++|||+-
T Consensus 172 ~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 172 LTLPKNRQILLYSATFP 188 (206)
T ss_dssp HHSCTTCEEEEEESCCC
T ss_pred HhCCccceEEEEEeeCC
Confidence 3343 567899999983
No 61
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.41 E-value=1.7e-12 Score=141.16 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=107.4
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHH-HHHh---cccCCcEEEEeCC-ccHHHHHHHHHHhCC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAH-LAEE---KNIWGPFLVVAPA-SVLNNWADEISRFCP 510 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~-l~~~---~~~~gp~LIV~P~-sll~nW~~Ei~k~~p 510 (1196)
.++|||.+++.++. .+.++|+..++|.|||++.+..+.. +... ......+|||+|. .+..||.+++.++.+
T Consensus 47 ~~~~~Q~~~i~~~~----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 47 LVTEIQKQTIGLAL----QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp BCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh----CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 68999999999887 6778999999999999986654443 3221 1122468999996 778899999999985
Q ss_pred C--CccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh---hhccCccEEEECCCccccCcc--cHH
Q 000994 511 D--LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY---FRRVKWQYMVLDEAQAIKSSN--SIR 583 (1196)
Q Consensus 511 ~--l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~---l~~~~w~~VIlDEAH~iKn~~--S~~ 583 (1196)
. +.+..++|+......... ....+|+|+|++.+...... +....+++||+||||++.+.. ...
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~~----------~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~ 192 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAER----------INNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTM 192 (236)
T ss_dssp TSSCCEEEECCC--CHHHHHH----------HTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHH
T ss_pred CCCeeEEEEECCCCHHHHHHh----------CCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHH
Confidence 4 677777776433222111 13578999999998664322 233468899999999986543 333
Q ss_pred HHHHHhcc-ccceEEeecCCC
Q 000994 584 WKTLLSFN-CRNRLLLTGTPI 603 (1196)
Q Consensus 584 ~kal~~l~-~~~RllLTGTPi 603 (1196)
...+..++ ....+++|||+-
T Consensus 193 ~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 193 NAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp HHHHHTSCTTSEEEEEESSCC
T ss_pred HHHHHhCCCCCeEEEEEeeCC
Confidence 34444454 445799999984
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.39 E-value=8.9e-13 Score=141.83 Aligned_cols=161 Identities=14% Similarity=0.087 Sum_probs=108.3
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCC----
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCP---- 510 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p---- 510 (1196)
.++|||.+++..+. .+.++|+..++|.|||+..+..+............+|||||. .+..||.+++.++..
T Consensus 26 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 26 KPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp SCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 58999999998887 467899999999999998655444333222223579999996 678899999998864
Q ss_pred --CCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh--hhhccCccEEEECCCccccCcc--cHHH
Q 000994 511 --DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK--YFRRVKWQYMVLDEAQAIKSSN--SIRW 584 (1196)
Q Consensus 511 --~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~--~l~~~~w~~VIlDEAH~iKn~~--S~~~ 584 (1196)
...+..+.|+........ . ...+.+|+|+|++.+..... .+.-..++++|+||||++.+.. ....
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~-~--------~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~ 172 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKALE-K--------LNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVD 172 (219)
T ss_dssp GGCCCEEEECCCSHHHHTTC-C--------CSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHH
T ss_pred ccceEEEEEeCCCCHHHHHH-H--------cCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHH
Confidence 456666666543322111 0 11357899999998875322 1222467899999999986533 2233
Q ss_pred HHHHhcc-ccceEEeecCCCCCChHHH
Q 000994 585 KTLLSFN-CRNRLLLTGTPIQNNMAEL 610 (1196)
Q Consensus 585 kal~~l~-~~~RllLTGTPiqN~l~EL 610 (1196)
..+..++ ....+++|||+ .+.+.++
T Consensus 173 ~i~~~~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 173 QIAARMPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp HHHHTSCTTCEEEEEESCC-CGGGHHH
T ss_pred HHHHhCCcccEEEEEecCC-CHHHHHH
Confidence 3444443 45679999997 4455543
No 63
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.37 E-value=2.4e-12 Score=141.83 Aligned_cols=155 Identities=20% Similarity=0.178 Sum_probs=107.6
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCC--CC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCP--DL 512 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p--~l 512 (1196)
.++|||.+++..+. .+.++|+..++|.|||++.+..+............+|||+|. .+..||.+++.++.. ++
T Consensus 65 ~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 65 KPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 68999999998877 567899999999999998665554433333333469999996 667899999999865 46
Q ss_pred ccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh---hhccCccEEEECCCccccCcc--cHHHHHH
Q 000994 513 KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY---FRRVKWQYMVLDEAQAIKSSN--SIRWKTL 587 (1196)
Q Consensus 513 ~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~---l~~~~w~~VIlDEAH~iKn~~--S~~~kal 587 (1196)
++..+.|+.......... ....+|+|+|++.+...... +.--.+++||+||||++.+.. ......+
T Consensus 141 ~~~~~~g~~~~~~~~~~~---------~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~ 211 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSLAL---------AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKIL 211 (249)
T ss_dssp CEEEECTTSCHHHHHHHH---------HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHH
T ss_pred eEEEEECCCChHHHHHHh---------cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHH
Confidence 666666654332211111 13578999999998664332 222357899999999886542 2233334
Q ss_pred Hhcc-ccceEEeecCCC
Q 000994 588 LSFN-CRNRLLLTGTPI 603 (1196)
Q Consensus 588 ~~l~-~~~RllLTGTPi 603 (1196)
..++ ....+++|||+-
T Consensus 212 ~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 212 KVIPRDRKTFLFSATMT 228 (249)
T ss_dssp HSSCSSSEEEEEESSCC
T ss_pred HhCCCCCeEEEEeccCC
Confidence 4443 456799999984
No 64
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.37 E-value=3.6e-12 Score=151.67 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=85.0
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCE------
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADT------ 1145 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdt------ 1145 (1196)
+.++|||+......+.+.+.|...+++...++|. +|..++++|.+ +++.| |++|.+.+.|||+. .++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~-g~~~v-LVaT~v~e~GiDip-~~~VI~~g~ 243 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKS-EKWDF-VITTDISEMGANFK-ADRVIDPRK 243 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHH-SCCSE-EEECGGGGTSCCCC-CSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcC-CCCeE-EEECchHHcCcccC-CcEEEecCc
Confidence 5689999999999999999999999999999997 68899999976 45655 78999999999998 666
Q ss_pred -----------EEEeCCCCCcchHHHHHHhhhccCC-CCcEEEE
Q 000994 1146 -----------VIFYESDWNPTLDLQAMDRAHRLGQ-TKDVSSW 1177 (1196)
Q Consensus 1146 -----------VIfyDsdWNPt~d~QAmdRahRiGQ-tK~VtVY 1177 (1196)
||.+|.+.++....|++||++|.|. ...+.+|
T Consensus 244 ~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 244 TIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp EEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred cccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 5678888899999999999999995 4444554
No 65
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.37 E-value=3.4e-12 Score=144.55 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=110.4
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
+..+.|+.+|..++.... +.++|||+......+.+.+.|..+|+....++|.++..+|..++..|.. +.+.| |++|
T Consensus 10 ~~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~-g~~~v-LVaT 85 (300)
T 3i32_A 10 APVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQ-GEVRV-LVAT 85 (300)
T ss_dssp CCSSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHH-TSCCE-EEEC
T ss_pred CCHHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc-CCceE-EEEe
Confidence 345789999999998754 7899999999999999999999999999999999999999999999986 45655 7789
Q ss_pred CccccccCcccCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1132 RAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
.+++.|||+..+++||.||++|++....|++||++|.|+. -.+|.|++...
T Consensus 86 ~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~e 136 (300)
T 3i32_A 86 DVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPRE 136 (300)
T ss_dssp STTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-------CEEEEEECSST
T ss_pred chhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC--ceEEEEeChHH
Confidence 9999999999999999999999999999999999999987 46777887764
No 66
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.36 E-value=3.6e-12 Score=137.23 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=102.3
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHH-HHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCC--C
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQA-MAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCP--D 511 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqa-Iall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p--~ 511 (1196)
.++|||.+++..+. .+.++++..++|.|||++. +.++..+.. ......+|||+|. .+..||.+++.++.+ +
T Consensus 36 ~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (224)
T 1qde_A 36 EPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQIQKVVMALAFHMD 110 (224)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCT-TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhc-cCCCceEEEEECCHHHHHHHHHHHHHHhcccC
Confidence 68999999998877 5678999999999999984 444444432 2223589999996 667899999999875 4
Q ss_pred CccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh--hhhccCccEEEECCCccccCccc--HHHHHH
Q 000994 512 LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK--YFRRVKWQYMVLDEAQAIKSSNS--IRWKTL 587 (1196)
Q Consensus 512 l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~--~l~~~~w~~VIlDEAH~iKn~~S--~~~kal 587 (1196)
+++..++|+....... ......+|+|+|++.+..... .+.--++++||+||||++.+... .....+
T Consensus 111 ~~~~~~~g~~~~~~~~----------~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~ 180 (224)
T 1qde_A 111 IKVHACIGGTSFVEDA----------EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 180 (224)
T ss_dssp CCEEEECC--------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHH
T ss_pred ceEEEEeCCcchHHHH----------hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHH
Confidence 5666666654322111 011237899999999865422 12223589999999999855332 223333
Q ss_pred Hhcc-ccceEEeecCCC
Q 000994 588 LSFN-CRNRLLLTGTPI 603 (1196)
Q Consensus 588 ~~l~-~~~RllLTGTPi 603 (1196)
..+. ....+++|||+-
T Consensus 181 ~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 181 TLLPPTTQVVLLSATMP 197 (224)
T ss_dssp HHSCTTCEEEEEESSCC
T ss_pred HhCCccCeEEEEEeecC
Confidence 3343 445799999984
No 67
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.32 E-value=3.9e-12 Score=138.78 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=102.2
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCCC--C
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPD--L 512 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p~--l 512 (1196)
.++|||.+++..++ .+.++|+..++|.|||+..+..+............+|||+|. .+..||.+++.++... .
T Consensus 52 ~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 58999999998877 567899999999999988655444433222223589999996 6788999999999753 4
Q ss_pred ccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh--hhhccCccEEEECCCccccCc--ccHHHHHHH
Q 000994 513 KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK--YFRRVKWQYMVLDEAQAIKSS--NSIRWKTLL 588 (1196)
Q Consensus 513 ~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~--~l~~~~w~~VIlDEAH~iKn~--~S~~~kal~ 588 (1196)
.+..+.|+.......... ....++|+|+|++.+..... .+..-.+.+||+||||++... .......+.
T Consensus 128 ~~~~~~g~~~~~~~~~~l--------~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~ 199 (237)
T 3bor_A 128 TCHACIGGTNVRNEMQKL--------QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 199 (237)
T ss_dssp CEEEECC---------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHH--------hcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHH
Confidence 555555543322111110 11347899999998765322 122335789999999988433 333444445
Q ss_pred hcc-ccceEEeecCCC
Q 000994 589 SFN-CRNRLLLTGTPI 603 (1196)
Q Consensus 589 ~l~-~~~RllLTGTPi 603 (1196)
.++ ....+++|||+-
T Consensus 200 ~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 200 KLNTSIQVVLLSATMP 215 (237)
T ss_dssp HSCTTCEEEEECSSCC
T ss_pred hCCCCCeEEEEEEecC
Confidence 554 446689999984
No 68
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.32 E-value=7.1e-12 Score=137.83 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=104.8
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcc---------cCCcEEEEeCC-ccHHHHHHHH
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKN---------IWGPFLVVAPA-SVLNNWADEI 505 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~---------~~gp~LIV~P~-sll~nW~~Ei 505 (1196)
.++|||.+++..+. .+.++|+..++|.|||+..+..+........ ....+|||||. .+..||.+++
T Consensus 45 ~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 45 RPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 68999999998887 5678999999999999986655544332211 12479999996 6788999999
Q ss_pred HHhCCC--CccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh--hhccCccEEEECCCccccCcc-
Q 000994 506 SRFCPD--LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY--FRRVKWQYMVLDEAQAIKSSN- 580 (1196)
Q Consensus 506 ~k~~p~--l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~--l~~~~w~~VIlDEAH~iKn~~- 580 (1196)
.++... +.+..+.|+.......... ..+.+|+|+|++.+...... +.--.+.+||+||||++.+..
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~ 191 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIREV---------QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGF 191 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHHHH---------SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTC
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHh---------CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCch
Confidence 998753 5556666654332222111 13578999999998654321 122356899999999986442
Q ss_pred -cHHHHHHHhc--c---ccceEEeecCCC
Q 000994 581 -SIRWKTLLSF--N---CRNRLLLTGTPI 603 (1196)
Q Consensus 581 -S~~~kal~~l--~---~~~RllLTGTPi 603 (1196)
......+..+ . ....+++||||-
T Consensus 192 ~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 192 EPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp HHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred HHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 2233333322 2 345799999973
No 69
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.32 E-value=5e-12 Score=150.85 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=80.0
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEE--
Q 000994 1071 ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF-- 1148 (1196)
Q Consensus 1071 ~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf-- 1148 (1196)
.+.++|||+......+.+.+.|...+++...++| ++|..++++|.+ +++.| |++|.+.+.|||+. +++||.
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~-g~~~v-LVaT~v~e~GiDip-v~~VI~~g 248 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQ-KKPDF-ILATDIAEMGANLC-VERVLDCR 248 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC---------CCCSE-EEESSSTTCCTTCC-CSEEEECC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcC-CCceE-EEECChhheeeccC-ceEEEeCC
Confidence 3779999999999999999999999999999999 368999999986 56665 77899999999999 999996
Q ss_pred -----------------eCCCCCcchHHHHHHhhhccCCCCcEEEEEee
Q 000994 1149 -----------------YESDWNPTLDLQAMDRAHRLGQTKDVSSWLKL 1180 (1196)
Q Consensus 1149 -----------------yDsdWNPt~d~QAmdRahRiGQtK~VtVYRLI 1180 (1196)
||.+.++....|++||++|.|.. +-.+|.|+
T Consensus 249 ~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~-~g~~~~l~ 296 (440)
T 1yks_A 249 TAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR-DGDSYYYS 296 (440)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC-CCEEEEEC
T ss_pred ccceeeecccccceeeccccccCHHHHHHhccccCCCCCC-CceEEEEe
Confidence 88899999999999999998532 22344454
No 70
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.28 E-value=1.2e-11 Score=148.46 Aligned_cols=104 Identities=15% Similarity=0.093 Sum_probs=87.6
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEE---
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF--- 1148 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf--- 1148 (1196)
+.++|||+.-....+.+.+.|...|+....|.|. +|..++.+|.+ +.+.| |++|.+.+.|||+.+ ++||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~-g~~~i-LVaT~v~~~GiDip~-~~VI~~G~ 262 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKN-GDWDF-VITTDISEMGANFGA-SRVIDCRK 262 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSS-CCCSE-EEESSCC---CCCSC-SEEEECCE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccC-CCceE-EEECChHHhCeecCC-CEEEECCc
Confidence 6699999999999999999999999999999985 68889999975 55655 789999999999999 99998
Q ss_pred -----------------eCCCCCcchHHHHHHhhhccCCCCcEEEEEeeeCC
Q 000994 1149 -----------------YESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHL 1183 (1196)
Q Consensus 1149 -----------------yDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~g 1183 (1196)
||.+.++....|++||++|.|.. +-.+|.|++..
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 263 SVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp ECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred ccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 88999999999999999999963 33456677765
No 71
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.26 E-value=1e-11 Score=148.71 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=83.2
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEEeC-
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYE- 1150 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIfyD- 1150 (1196)
+.++|||+.-....+.+.++|...|+....|+|.. ++.++++|.+ +.+.| |++|.+.+.|||+.. +.||.||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~-g~~~v-LVaT~v~~~GiDip~-~~VI~~~~ 260 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKL-TDWDF-VVTTDISEMGANFRA-GRVIDPRR 260 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGS-SCCSE-EEECGGGGSSCCCCC-SEEEECCE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhcc-CCceE-EEECCHHHhCcCCCC-CEEEECCC
Confidence 55899999999999999999999999999999975 4678999975 56655 789999999999999 9999988
Q ss_pred -------------------CCCCcchHHHHHHhhhccCCC
Q 000994 1151 -------------------SDWNPTLDLQAMDRAHRLGQT 1171 (1196)
Q Consensus 1151 -------------------sdWNPt~d~QAmdRahRiGQt 1171 (1196)
.+.++....|++||++|.|..
T Consensus 261 ~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 261 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred cccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 788899999999999999973
No 72
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.25 E-value=9.2e-10 Score=137.55 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=100.8
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
+...|+.+|..++.+....|.+||||+......+.|...|..+|+++..|.|.....+|.-+...|+. .. +|++|.
T Consensus 413 ~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~---g~-VlIATd 488 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK---GA-VTIATN 488 (844)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST---TC-EEEEET
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC---Ce-EEEeCC
Confidence 44679999999998877778899999999999999999999999999999999876666544444443 23 488999
Q ss_pred ccccccCcc--------cCCEEEEeCCCCCcchHHHHHHhhhccCCCCcE
Q 000994 1133 AGGLGINLT--------AADTVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1174 (1196)
Q Consensus 1133 AGGlGINLT--------aAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~V 1174 (1196)
.+|-|++.. ...+||.||.+-++.++.|++||++|-|..-..
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999998 677999999999999999999999999986544
No 73
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.24 E-value=3.4e-11 Score=150.41 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=85.9
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEE--
Q 000994 1071 ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF-- 1148 (1196)
Q Consensus 1071 ~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf-- 1148 (1196)
.+.++|||+......+.+.++|...+++...++|. +|..++++|.+ +++.| |++|.+.+.|||+. +++||.
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~-g~~~V-LVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKN-GDWDF-VITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGT-CCCSE-EEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHC-CCceE-EEECchhhcceeeC-CcEEEECC
Confidence 47799999999999999999999999999999994 79999999976 56666 77899999999999 999997
Q ss_pred ------------------eCCCCCcchHHHHHHhhhcc-CCCCcEEEEEee
Q 000994 1149 ------------------YESDWNPTLDLQAMDRAHRL-GQTKDVSSWLKL 1180 (1196)
Q Consensus 1149 ------------------yDsdWNPt~d~QAmdRahRi-GQtK~VtVYRLI 1180 (1196)
||.+.++....|++||++|. |+.-. +|.|+
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~--ai~l~ 530 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGD--EYHYG 530 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCE--EEEEC
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCE--EEEEE
Confidence 55667888999999999999 45433 34443
No 74
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.23 E-value=5.1e-11 Score=130.21 Aligned_cols=155 Identities=14% Similarity=0.161 Sum_probs=101.8
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHh-cccCCcEEEEeCC-ccHHHHHHHHHHhCC--C
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEE-KNIWGPFLVVAPA-SVLNNWADEISRFCP--D 511 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~-~~~~gp~LIV~P~-sll~nW~~Ei~k~~p--~ 511 (1196)
.++|||.+++..+. .+.++++...+|.|||+..+..+...... ......+|||+|. .+..||.+++.+++. +
T Consensus 51 ~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 58999999998776 56789999999999999865444333322 2222369999995 578899999999975 3
Q ss_pred CccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh----hhccCccEEEECCCccccCcc-----cH
Q 000994 512 LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY----FRRVKWQYMVLDEAQAIKSSN-----SI 582 (1196)
Q Consensus 512 l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~----l~~~~w~~VIlDEAH~iKn~~-----S~ 582 (1196)
+++..+.|...... .+. .....+++|+|+|++.+...... +.--++.++|+||||++-... ..
T Consensus 127 ~~~~~~~~~~~~~~----~~~----~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 198 (245)
T 3dkp_A 127 FRIHMIHKAAVAAK----KFG----PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQ 198 (245)
T ss_dssp CCEECCCHHHHHHT----TTS----TTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHH
T ss_pred ceEEEEecCccHHH----Hhh----hhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHH
Confidence 45555555322211 111 01124678999999998654321 222357899999999985422 12
Q ss_pred HHHHHHhc--cccceEEeecCC
Q 000994 583 RWKTLLSF--NCRNRLLLTGTP 602 (1196)
Q Consensus 583 ~~kal~~l--~~~~RllLTGTP 602 (1196)
....+..+ .....+++|||+
T Consensus 199 ~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 199 LASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHHHHHCCCTTCEEEEEESSC
T ss_pred HHHHHHhcCCCCcEEEEEeccC
Confidence 22222333 245679999998
No 75
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.23 E-value=5.7e-11 Score=148.12 Aligned_cols=106 Identities=19% Similarity=0.203 Sum_probs=93.4
Q ss_pred EEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHcc-CCCceEEEEecCccccccCcccCCEEEEeCC---
Q 000994 1076 LLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLLSTRAGGLGINLTAADTVIFYES--- 1151 (1196)
Q Consensus 1076 LIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~-~~di~VfLLSTrAGGlGINLTaAdtVIfyDs--- 1151 (1196)
+||+.-.+.++.+.+.|...++....++|+++.++|..++..|+. .+.+.| |++|.+.+.|||+ .+++||+++.
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~V-LVATdi~e~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI-LVATDAIGMGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCE-EEECGGGGSSCCC-CBSEEEESCSBC-
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEE-EEeCcHHHCCcCc-CccEEEECCcccc
Confidence 677777888999999999999999999999999999999999986 234555 7888999999999 9999999999
Q ss_pred -----------CCCcchHHHHHHhhhccCCC-CcEEEEEeeeCC
Q 000994 1152 -----------DWNPTLDLQAMDRAHRLGQT-KDVSSWLKLCHL 1183 (1196)
Q Consensus 1152 -----------dWNPt~d~QAmdRahRiGQt-K~VtVYRLIt~g 1183 (1196)
+++++...|++|||+|.|+. ..-.||++...+
T Consensus 402 ~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d 445 (677)
T 3rc3_A 402 SINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED 445 (677)
T ss_dssp ----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH
T ss_pred ccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch
Confidence 77889999999999999987 557888887665
No 76
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.21 E-value=1.2e-09 Score=148.68 Aligned_cols=150 Identities=16% Similarity=0.151 Sum_probs=96.6
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHH-HHHHHHHhcccCCcEEEEeC-CccHHHHHHHHH-HhCC--
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMA-FLAHLAEEKNIWGPFLVVAP-ASVLNNWADEIS-RFCP-- 510 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIa-ll~~l~~~~~~~gp~LIV~P-~sll~nW~~Ei~-k~~p-- 510 (1196)
.+.|.|.+++.-++ +.+.+.+++..+|.|||+.+.- ++..+.... .+.+|+|+| .++..+=..++. +|.+
T Consensus 926 ~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~~--~~kavyi~P~raLa~q~~~~~~~~f~~~~ 1000 (1724)
T 4f92_B 926 FFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQSS--EGRCVYITPMEALAEQVYMDWYEKFQDRL 1000 (1724)
T ss_dssp BCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT--TCCEEEECSCHHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC--CCEEEEEcChHHHHHHHHHHHHHHhchhc
Confidence 47789999987665 4677899999999999998744 444444322 257999999 456666555554 3443
Q ss_pred CCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhc----cCccEEEECCCccccCcccHHHHH
Q 000994 511 DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRR----VKWQYMVLDEAQAIKSSNSIRWKT 586 (1196)
Q Consensus 511 ~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~----~~w~~VIlDEAH~iKn~~S~~~ka 586 (1196)
+.+|..+.|+........ ...+|+|+|++.+......... -+..+||+||+|.+.......+..
T Consensus 1001 g~~V~~ltGd~~~~~~~~------------~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~ 1068 (1724)
T 4f92_B 1001 NKKVVLLTGETSTDLKLL------------GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEV 1068 (1724)
T ss_dssp CCCEEECCSCHHHHHHHH------------HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHH
T ss_pred CCEEEEEECCCCcchhhc------------CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHH
Confidence 567888888654332211 2457999999987432211111 145899999999997654443332
Q ss_pred HH-hc--------cccceEEeecCC
Q 000994 587 LL-SF--------NCRNRLLLTGTP 602 (1196)
Q Consensus 587 l~-~l--------~~~~RllLTGTP 602 (1196)
+. .+ +....++||+|-
T Consensus 1069 il~rl~~i~~~~~~~~riI~lSATl 1093 (1724)
T 4f92_B 1069 ICSRMRYISSQIERPIRIVALSSSL 1093 (1724)
T ss_dssp HHHHHHHHHHTTSSCCEEEEEESCB
T ss_pred HHHHHHHHHhhcCCCceEEEEeCCC
Confidence 22 11 223568899984
No 77
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.21 E-value=2.8e-10 Score=144.53 Aligned_cols=115 Identities=14% Similarity=0.059 Sum_probs=96.7
Q ss_pred CCCeEEEEecchHHHHHHHHHHHh-----------CCCcEEEEeCCCCHHHHHHHHHHHcc----CCCceEEEEecCccc
Q 000994 1071 ENHRVLLFAQMTKMLNILEDYMNY-----------RKYRYLRLDGSSTIMDRRDMVRDFQH----RSDIFVFLLSTRAGG 1135 (1196)
Q Consensus 1071 ~ghKVLIFSQ~t~mlDlLee~L~~-----------rg~~y~rLDGStk~~dR~~~V~dFq~----~~di~VfLLSTrAGG 1135 (1196)
.+.+||||+.-...++.+.+.|.. .++..+.+.|+++.++|+.+++.|.. ++.+.| |++|.+.+
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV-lVAT~iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV-VISTNIAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE-EEECTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE-EEeCcHHH
Confidence 367999999999988888888864 68889999999999999999999971 245554 78999999
Q ss_pred cccCcccCCEEEEeCC------------------CCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcHHHHH
Q 000994 1136 LGINLTAADTVIFYES------------------DWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFIFSMI 1189 (1196)
Q Consensus 1136 lGINLTaAdtVIfyDs------------------dWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTIEErI 1189 (1196)
.|||+.+.+.||.++. +.++..-.|++|||+|. ++=.+|+|+++...++.+
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~~~~l 449 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAFQKEL 449 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHHHHTS
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHhcccc
Confidence 9999999999999555 67888889999999997 567899999887765543
No 78
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.18 E-value=1.4e-10 Score=143.72 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=85.7
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEE----
Q 000994 1071 ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTV---- 1146 (1196)
Q Consensus 1071 ~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtV---- 1146 (1196)
.+.++|||+.-....+.+.+.|...+++...|+|. +|..++++|.+ +.+.| |++|.+.+.|||+. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~-g~~~V-LVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKL-TDWDF-VVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHH-SCCSE-EEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcC-CCcEE-EEECcHHHcCcccC-ceEEEECc
Confidence 36699999999999999999999999999999985 78899999976 45555 78999999999996 9999
Q ss_pred ----------------EEeCCCCCcchHHHHHHhhhccCCCCcEEEEEeee
Q 000994 1147 ----------------IFYESDWNPTLDLQAMDRAHRLGQTKDVSSWLKLC 1181 (1196)
Q Consensus 1147 ----------------IfyDsdWNPt~d~QAmdRahRiGQtK~VtVYRLIt 1181 (1196)
|.||.+-++....|++||++|.|..+- .+|.|++
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~ 476 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSG 476 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECS
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEcc
Confidence 455555666679999999999986433 3566776
No 79
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.18 E-value=7.9e-11 Score=127.28 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=100.9
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHH-HHHh-----cccCCcEEEEeCC-ccHHHHHHHHHHh
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAH-LAEE-----KNIWGPFLVVAPA-SVLNNWADEISRF 508 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~-l~~~-----~~~~gp~LIV~P~-sll~nW~~Ei~k~ 508 (1196)
.++|||.+++..+. .+.++|+...+|.|||+..+..+.. +... ......+|||+|. .+..||.+++.++
T Consensus 42 ~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 68999999998877 6778999999999999986544333 2211 1123568999995 5678999999998
Q ss_pred C-CCCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh--hhhccCccEEEECCCccccCcc--cHH
Q 000994 509 C-PDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK--YFRRVKWQYMVLDEAQAIKSSN--SIR 583 (1196)
Q Consensus 509 ~-p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~--~l~~~~w~~VIlDEAH~iKn~~--S~~ 583 (1196)
. +++++..++|+.......... ..+++|+|+|++.+..... .+.--.+.+||+||||++.+.. ...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~ 188 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQIEDI---------SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQI 188 (228)
T ss_dssp CCTTCCEEEECC------CHHHH---------HSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHH
T ss_pred cccCceEEEEECCCChHHHHHHh---------cCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHH
Confidence 6 466777666654322111110 1347899999999866322 1122357899999999886542 223
Q ss_pred HHHHHhcc-ccceEEeecCC
Q 000994 584 WKTLLSFN-CRNRLLLTGTP 602 (1196)
Q Consensus 584 ~kal~~l~-~~~RllLTGTP 602 (1196)
...+..++ ....+++|||.
T Consensus 189 ~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 189 RKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp HHHHHHSCSSCEEEEEESCC
T ss_pred HHHHHhCCcCCeEEEEEeeC
Confidence 33344443 45668999996
No 80
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.15 E-value=1.8e-08 Score=126.03 Aligned_cols=120 Identities=15% Similarity=0.067 Sum_probs=100.9
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
+...|..+|..++.+....|..||||+......+.|...|..+|+++..|.|.....+|.-+...|+. . . ++++|.
T Consensus 441 t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~--G-~-VtIATn 516 (922)
T 1nkt_A 441 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR--G-G-VTVATN 516 (922)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST--T-C-EEEEET
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--C-e-EEEecc
Confidence 45679999999998888889999999999999999999999999999999999765455444455653 2 3 488999
Q ss_pred ccccccCcccC----------------------------------------------------CEEEEeCCCCCcchHHH
Q 000994 1133 AGGLGINLTAA----------------------------------------------------DTVIFYESDWNPTLDLQ 1160 (1196)
Q Consensus 1133 AGGlGINLTaA----------------------------------------------------dtVIfyDsdWNPt~d~Q 1160 (1196)
.+|-|+++... .+||.||.+-++.++.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999998753 49999999999999999
Q ss_pred HHHhhhccCCCCcEEE
Q 000994 1161 AMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1161 AmdRahRiGQtK~VtV 1176 (1196)
++||++|-|..-....
T Consensus 597 r~GRTGRqGdpG~s~f 612 (922)
T 1nkt_A 597 LRGRSGRQGDPGESRF 612 (922)
T ss_dssp HHHTSSGGGCCEEEEE
T ss_pred HhcccccCCCCeeEEE
Confidence 9999999998654433
No 81
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.12 E-value=1.7e-09 Score=134.76 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=102.7
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecC
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTr 1132 (1196)
+...|+.+|..++.+....|..||||+......+.|...|..+|+++..|.|.....+|.-+...|+. . -++++|.
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~--G--~VtIATn 497 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP--A--AVTIATN 497 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTST--T--CEEEEES
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--C--eEEEecc
Confidence 45679999999998887889999999999999999999999999999999999776666555566764 2 2588999
Q ss_pred ccccccCcccC-------------------------------------CEEEEeCCCCCcchHHHHHHhhhccCCCCcEE
Q 000994 1133 AGGLGINLTAA-------------------------------------DTVIFYESDWNPTLDLQAMDRAHRLGQTKDVS 1175 (1196)
Q Consensus 1133 AGGlGINLTaA-------------------------------------dtVIfyDsdWNPt~d~QAmdRahRiGQtK~Vt 1175 (1196)
.+|-|++.... .+||.||.+-++.++.|++||++|-|..-...
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~ 577 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSR 577 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEE
Confidence 99999998752 59999999999999999999999999865443
Q ss_pred E
Q 000994 1176 S 1176 (1196)
Q Consensus 1176 V 1176 (1196)
.
T Consensus 578 ~ 578 (853)
T 2fsf_A 578 F 578 (853)
T ss_dssp E
T ss_pred E
Confidence 3
No 82
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.09 E-value=3.8e-10 Score=125.13 Aligned_cols=155 Identities=18% Similarity=0.214 Sum_probs=102.0
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHH-HHHhc---ccCCcEEEEeCC-ccHHHHHHHHHHhCC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAH-LAEEK---NIWGPFLVVAPA-SVLNNWADEISRFCP 510 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~-l~~~~---~~~gp~LIV~P~-sll~nW~~Ei~k~~p 510 (1196)
.++|+|.+++..+. .+.++|+...+|.|||+.++..+.. +.... .....+|||+|. .+..||.+++.++..
T Consensus 76 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 58999999998777 3567899999999999986544443 33211 122468999995 678899999999875
Q ss_pred C--CccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhh---hhccCccEEEECCCccccCcc--cHH
Q 000994 511 D--LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY---FRRVKWQYMVLDEAQAIKSSN--SIR 583 (1196)
Q Consensus 511 ~--l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~---l~~~~w~~VIlDEAH~iKn~~--S~~ 583 (1196)
. ..+..+.|+.......... ..+.+|+|+|++.+...... +.--.+.+||+||||++-... ...
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~---------~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l 222 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQKL---------GNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEEL 222 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHHH---------HHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHH
T ss_pred hcCceEEEEECCCCHHHHHHHh---------cCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHH
Confidence 4 3444455543322211110 12368999999988654322 222357899999999976532 222
Q ss_pred HHHHHhcc-ccceEEeecCCC
Q 000994 584 WKTLLSFN-CRNRLLLTGTPI 603 (1196)
Q Consensus 584 ~kal~~l~-~~~RllLTGTPi 603 (1196)
...+..+. ....+++|||+-
T Consensus 223 ~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 223 KQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp HHHHHHSCSSSEEEEECSSCC
T ss_pred HHHHHhCCCCCeEEEEEecCC
Confidence 33334443 456799999984
No 83
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.08 E-value=4.7e-10 Score=122.55 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=102.0
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhc-----ccCCcEEEEeCC-ccHHHHHHHHHHhC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEK-----NIWGPFLVVAPA-SVLNNWADEISRFC 509 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~-----~~~gp~LIV~P~-sll~nW~~Ei~k~~ 509 (1196)
.++|||.+++..+. .|.++++...+|.|||+..+..+....... .....+|||+|. .+..||.+++.++.
T Consensus 51 ~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 58999999998777 567899999999999998654444333221 122468999995 56778999988875
Q ss_pred C--CCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh--hhhccCccEEEECCCccccCcc--cHH
Q 000994 510 P--DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK--YFRRVKWQYMVLDEAQAIKSSN--SIR 583 (1196)
Q Consensus 510 p--~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~--~l~~~~w~~VIlDEAH~iKn~~--S~~ 583 (1196)
. ++++..++|+.......... ..+.+|+|+|++.+..... .+.--.+.++|+||||++-... ...
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~~~---------~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~ 197 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIRDL---------ERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQI 197 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHH---------HHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHH
T ss_pred hhcCceEEEEECCCChHHHHHHh---------cCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHH
Confidence 3 56666666654332221111 1246899999998865432 1222367899999999886533 222
Q ss_pred HHHHHhc-cccceEEeecCC
Q 000994 584 WKTLLSF-NCRNRLLLTGTP 602 (1196)
Q Consensus 584 ~kal~~l-~~~~RllLTGTP 602 (1196)
...+..+ +....+++|||+
T Consensus 198 ~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 198 RKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp HHHHTTSCSSCEEEEEESCC
T ss_pred HHHHHhCCccceEEEEEeec
Confidence 2333334 345678999996
No 84
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.07 E-value=6.9e-09 Score=141.23 Aligned_cols=88 Identities=26% Similarity=0.253 Sum_probs=70.8
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEE----EeCCC------CCcchHHHHHHhh
Q 000994 1096 KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVI----FYESD------WNPTLDLQAMDRA 1165 (1196)
Q Consensus 1096 g~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVI----fyDsd------WNPt~d~QAmdRa 1165 (1196)
.+.+....|+++.++|..+-..|.. +.+.| |++|.+.+.||||.+-+.|| .||+. -++....|.+|||
T Consensus 378 ~~Gva~HHagL~~~~R~~vE~~F~~-G~i~v-lvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRA 455 (1724)
T 4f92_B 378 PYGFAIHHAGMTRVDRTLVEDLFAD-KHIQV-LVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRA 455 (1724)
T ss_dssp TTTEEEECSSSCTHHHHHHHHHHHT-TCCCE-EEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTB
T ss_pred hcCEEEEcCCCCHHHHHHHHHHHHC-CCCeE-EEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhc
Confidence 3455678999999999999999976 67877 66889999999998777666 36664 3677889999999
Q ss_pred hccCCCCcEEEEEeeeCCcH
Q 000994 1166 HRLGQTKDVSSWLKLCHLFI 1185 (1196)
Q Consensus 1166 hRiGQtK~VtVYRLIt~gTI 1185 (1196)
+|-|....-.++-+...+..
T Consensus 456 GR~g~d~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 456 GRPQYDTKGEGILITSHGEL 475 (1724)
T ss_dssp SCTTTCSCEEEEEEEESTTC
T ss_pred cCCCCCCccEEEEEecchhH
Confidence 99998777777777766543
No 85
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.05 E-value=1.1e-09 Score=135.32 Aligned_cols=99 Identities=16% Similarity=0.058 Sum_probs=81.0
Q ss_pred CCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccccCcccCCEEEE---
Q 000994 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF--- 1148 (1196)
Q Consensus 1072 ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlGINLTaAdtVIf--- 1148 (1196)
+.++|||+.-.+..+.+.+.|...|++...+.|+++.++ |.. ... -+|++|.+.+.|||+. .+.||.
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~-~~~-~VLVATdVaerGIDId-V~~VI~~Gl 465 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPT-IGD-VVVVATDALMTGYTGD-FDSVIDCNT 465 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCS-SSC-EEEEECTTHHHHCCCC-BSEEEECCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHh-CCC-cEEEECChHHccCCCC-CcEEEecCc
Confidence 679999999999999999999999999999999998654 433 333 5688999999999985 999993
Q ss_pred -------eC-----------CCCCcchHHHHHHhhhccCCCCcEEEEEeeeCCc
Q 000994 1149 -------YE-----------SDWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLF 1184 (1196)
Q Consensus 1149 -------yD-----------sdWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gT 1184 (1196)
|| .+-++....|++||++| |..- . |.|++.+.
T Consensus 466 ~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G--~-i~lvt~~e 515 (666)
T 3o8b_A 466 CVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG--I-YRFVTPGE 515 (666)
T ss_dssp EEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE--E-EEESCCCC
T ss_pred ccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC--E-EEEEecch
Confidence 54 45566788999999999 6543 2 78887754
No 86
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.05 E-value=5.3e-08 Score=119.38 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=100.7
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST 1131 (1196)
.+...|..+|..++.+....|.+||||+......+.|...|...|+++..|.|.....+|.-+...|+. . . ++++|
T Consensus 454 ~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g-~-VtVAT 529 (822)
T 3jux_A 454 RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--G-M-VTIAT 529 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--T-C-EEEEE
T ss_pred ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--C-e-EEEEc
Confidence 355789999999999988789999999999999999999999999999999998443333333344543 2 2 58899
Q ss_pred CccccccCcc--------cCCEEEEeCCCCCcchHHHHHHhhhccCCCCcEEE
Q 000994 1132 RAGGLGINLT--------AADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1132 rAGGlGINLT--------aAdtVIfyDsdWNPt~d~QAmdRahRiGQtK~VtV 1176 (1196)
..+|.|++.. .-.+||.||.+-++..+.|++||++|-|+.-....
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~ 582 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIF 582 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEE
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEE
Confidence 9999999987 56799999999999999999999999998765433
No 87
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.83 E-value=7e-09 Score=117.39 Aligned_cols=153 Identities=19% Similarity=0.180 Sum_probs=98.3
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHH-HHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhC---C
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAM-AFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFC---P 510 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaI-all~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~---p 510 (1196)
.+.|+|..++..++.. .+.+.|+...+|.|||+..+ .++..+... .....+|||+|. .+..|+...+.++. +
T Consensus 114 ~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 114 RPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp SCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhcc-CCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 6899999999776621 23688999999999999754 344333322 222368999995 56678888887765 5
Q ss_pred CCccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHh---hhhccCccEEEECCCccccCccc--HHHH
Q 000994 511 DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK---YFRRVKWQYMVLDEAQAIKSSNS--IRWK 585 (1196)
Q Consensus 511 ~l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~---~l~~~~w~~VIlDEAH~iKn~~S--~~~k 585 (1196)
.+.+..+.|+..... ......+|+|+|++.+..... .+.--...++||||||++-.... ....
T Consensus 191 ~~~~~~~~~~~~~~~------------~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~ 258 (300)
T 3fmo_B 191 ELKLAYAVRGNKLER------------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258 (300)
T ss_dssp TCCEEEESTTCCCCT------------TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHH
T ss_pred CcEEEEEeCCccHhh------------hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHH
Confidence 666666655432110 012456899999999865432 22223578999999999864211 2222
Q ss_pred HHHh-c-cccceEEeecCCC
Q 000994 586 TLLS-F-NCRNRLLLTGTPI 603 (1196)
Q Consensus 586 al~~-l-~~~~RllLTGTPi 603 (1196)
.+.. + +....+++|||+-
T Consensus 259 ~i~~~~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 259 RIQRMLPRNCQMLLFSATFE 278 (300)
T ss_dssp HHHTTSCTTCEEEEEESCCC
T ss_pred HHHHhCCCCCEEEEEeccCC
Confidence 2333 3 2345789999984
No 88
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.78 E-value=2.4e-08 Score=124.83 Aligned_cols=126 Identities=16% Similarity=0.182 Sum_probs=110.6
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
.+++..|...|......|.+||||+....+.+.|.++|...|++...+.|.++..+|..++++|.. +.+. +|++|.+.
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~-g~~~-VLvaT~~l 499 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL-GHYD-CLVGINLL 499 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT-TSCS-EEEESCCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc-CCce-EEEccChh
Confidence 467777777777777789999999999999999999999999999999999999999999999975 5555 47889999
Q ss_pred ccccCcccCCEEEEeCC-----CCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcH
Q 000994 1135 GLGINLTAADTVIFYES-----DWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFI 1185 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDs-----dWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTI 1185 (1196)
+.|||+..++.||+||. ++++....|++||++|.|. -.++.|+...+.
T Consensus 500 ~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~~ 552 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVSE 552 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCCH
T ss_pred hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCCH
Confidence 99999999999999998 7899999999999999863 356667777653
No 89
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.71 E-value=6.1e-08 Score=121.21 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=110.3
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcc
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAG 1134 (1196)
.+++..|...|......|.+||||+.-..+.+.|.++|...|++...++|.++..+|..++++|.. +.+. +|++|.+.
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~-g~~~-VLVaT~~l 505 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRL-GKYD-VLVGINLL 505 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHH-TSCS-EEEESCCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhc-CCeE-EEEecchh
Confidence 467777777777777789999999999999999999999999999999999999999999999976 4555 47889999
Q ss_pred ccccCcccCCEEEEeCC-----CCCcchHHHHHHhhhccCCCCcEEEEEeeeCCcH
Q 000994 1135 GLGINLTAADTVIFYES-----DWNPTLDLQAMDRAHRLGQTKDVSSWLKLCHLFI 1185 (1196)
Q Consensus 1135 GlGINLTaAdtVIfyDs-----dWNPt~d~QAmdRahRiGQtK~VtVYRLIt~gTI 1185 (1196)
+.|+++..++.||++|. ++++....|++||++|- +.-.++.|++..+.
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKITK 558 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCH
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCH
Confidence 99999999999999998 78999999999999996 34557778887653
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.30 E-value=2.1e-06 Score=105.16 Aligned_cols=135 Identities=14% Similarity=0.142 Sum_probs=89.8
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCC--CC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCP--DL 512 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p--~l 512 (1196)
.+||||.+.+.-+......+..+++-..+|.|||+..+.-+.. . ..++||++|. .+..||.+++.++.. ++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~---~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---V---KPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---H---CSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---C---CCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 6899999999887777778888999999999999976544433 1 2689999995 567789999988743 45
Q ss_pred ccccccCChhhHHHHh---------------hccCcc----------cc-------------------cccCCCceEEEE
Q 000994 513 KTLPYWGGLQERMVLR---------------KNINPK----------RL-------------------YRRDAGFHILIT 548 (1196)
Q Consensus 513 ~v~~y~G~~~~r~~l~---------------~~~~~~----------~~-------------------~~~~~~~~VvIt 548 (1196)
++.+..|...- -.. ..|... .. .......+|||+
T Consensus 77 ~~~~l~gr~~~--c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~ 154 (551)
T 3crv_A 77 TFSFLVGKPSS--CLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIAL 154 (551)
T ss_dssp CEEECCCHHHH--CTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEE
T ss_pred cEEEEcccccc--CcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEe
Confidence 56655552110 000 000000 00 001135689999
Q ss_pred ehhhHHhcHhh--hh-ccCccEEEECCCccccC
Q 000994 549 SYQLLVADEKY--FR-RVKWQYMVLDEAQAIKS 578 (1196)
Q Consensus 549 SYe~l~~d~~~--l~-~~~w~~VIlDEAH~iKn 578 (1196)
+|..+..+... +. .....++|+||||++-+
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 155 TYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp ETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred CchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99999876321 11 13567899999999966
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.20 E-value=1e-05 Score=87.86 Aligned_cols=153 Identities=13% Similarity=0.098 Sum_probs=88.6
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcc--cCCcEEEEeCCcc-HHHHHHHHHHhCCCC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKN--IWGPFLVVAPASV-LNNWADEISRFCPDL 512 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~--~~gp~LIV~P~sl-l~nW~~Ei~k~~p~l 512 (1196)
.+.++|.+.+..+. .|...++.-.+|.|||.+....+.......+ ....+++++|... ..+..+.+......
T Consensus 61 p~~~~q~~~i~~i~----~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~- 135 (235)
T 3llm_A 61 PVKKFESEILEAIS----QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE- 135 (235)
T ss_dssp GGGGGHHHHHHHHH----HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC-
T ss_pred ChHHHHHHHHHHHh----cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc-
Confidence 47889999998776 5667899999999999765544433222211 1236788889654 44566666655422
Q ss_pred ccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccc-cCcccH--HHHHHHh
Q 000994 513 KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAI-KSSNSI--RWKTLLS 589 (1196)
Q Consensus 513 ~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~i-Kn~~S~--~~kal~~ 589 (1196)
.+....|.. . .... .......+|+++|.+.+...... .--++++||+||||.. -+.... ..+.+..
T Consensus 136 ~~~~~~g~~-~--------~~~~-~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 136 EPGKSCGYS-V--------RFES-ILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp CTTSSEEEE-E--------TTEE-ECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred ccCceEEEe-e--------chhh-ccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 111111110 0 0000 01114578999999887665322 1236789999999973 111111 2222222
Q ss_pred -ccccceEEeecCCCC
Q 000994 590 -FNCRNRLLLTGTPIQ 604 (1196)
Q Consensus 590 -l~~~~RllLTGTPiq 604 (1196)
......+++|||+-.
T Consensus 205 ~~~~~~~il~SAT~~~ 220 (235)
T 3llm_A 205 AYPEVRIVLMSATIDT 220 (235)
T ss_dssp HCTTSEEEEEECSSCC
T ss_pred hCCCCeEEEEecCCCH
Confidence 234567999999743
No 92
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.19 E-value=3.7e-06 Score=102.72 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=67.9
Q ss_pred HHHHHHHHHHh-hCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCccccc
Q 000994 1059 QTLDILLKRLR-AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLG 1137 (1196)
Q Consensus 1059 ~~Ld~LL~~Lk-~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGlG 1137 (1196)
..+.+.|.++. ..+.++|||+..-++++.+.+.|.. +. +.+.|.. .+|..+++.|...+.+ .|.+.|..-..|
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~~i-l~~V~~~~~~EG 443 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGKYL-VMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSCCE-EEEEC-------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCCeE-EEEEecCceecc
Confidence 44545555543 4567999999999999998887754 33 4455654 4699999999873322 333367889999
Q ss_pred cCccc----CCEEEEeCCCCCcc------------------------------hHHHHHHhhhccCCCCcEEE
Q 000994 1138 INLTA----ADTVIFYESDWNPT------------------------------LDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1138 INLTa----AdtVIfyDsdWNPt------------------------------~d~QAmdRahRiGQtK~VtV 1176 (1196)
||+.. +..||++..++-+. .-.||+||+-|--.-+-|.|
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ 516 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIY 516 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEE
T ss_pred eecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEE
Confidence 99996 78899998776322 13499999998766555533
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.69 E-value=0.00012 Score=90.88 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=58.7
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc-cHHHHHHHHHHhC--CCC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS-VLNNWADEISRFC--PDL 512 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s-ll~nW~~Ei~k~~--p~l 512 (1196)
.+||+|.+.+.-+......+..+++...+|.|||+..+.-+.......+ .+++|++|.. +..|+.+++.++. ..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~--~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK--LKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC--CeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 5699999999888887788889999999999999987654433332222 5889999954 5778999988753 244
Q ss_pred ccccccC
Q 000994 513 KTLPYWG 519 (1196)
Q Consensus 513 ~v~~y~G 519 (1196)
+++...|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 4444333
No 94
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.30 E-value=0.0013 Score=82.78 Aligned_cols=145 Identities=21% Similarity=0.206 Sum_probs=90.1
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccH----HHHHHHHHHhCCC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL----NNWADEISRFCPD 511 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll----~nW~~Ei~k~~p~ 511 (1196)
...|-|..|+--|+ +|. |....+|.|||+.+..-+. +....+ ..++||||..-| .+|...+.+|. +
T Consensus 79 ~Pt~VQ~~~ip~Ll----qG~--IaeakTGeGKTLvf~Lp~~-L~aL~G--~qv~VvTPTreLA~Qdae~m~~l~~~l-G 148 (997)
T 2ipc_A 79 RHFDVQLIGGAVLH----EGK--IAEMKTGEGKTLVATLAVA-LNALTG--KGVHVVTVNDYLARRDAEWMGPVYRGL-G 148 (997)
T ss_dssp CCCHHHHHHHHHHH----TTS--EEECCSTHHHHHHHHHHHH-HHHTTC--SCCEEEESSHHHHHHHHHHHHHHHHTT-T
T ss_pred CCcHHHHhhccccc----CCc--eeeccCCCchHHHHHHHHH-HHHHhC--CCEEEEeCCHHHHHHHHHHHHHHHHhc-C
Confidence 45778888886555 444 8888899999997543332 211112 368999997654 34888888877 5
Q ss_pred CccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhc----H-----hhhhcc---CccEEEECCCccccCc
Q 000994 512 LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD----E-----KYFRRV---KWQYMVLDEAQAIKSS 579 (1196)
Q Consensus 512 l~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d----~-----~~l~~~---~w~~VIlDEAH~iKn~ 579 (1196)
+++.+..|+........ ....||++.|...+..| . ..+..- ...++||||+|.+-..
T Consensus 149 Lsv~~i~Gg~~~~~r~~-----------ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD 217 (997)
T 2ipc_A 149 LSVGVIQHASTPAERRK-----------AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID 217 (997)
T ss_dssp CCEEECCTTCCHHHHHH-----------HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS
T ss_pred CeEEEEeCCCCHHHHHH-----------HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh
Confidence 77766666433211100 02368999998887321 1 112222 5789999999965321
Q ss_pred ccHHHHHHHhccccceEEeecCCCCCChHHHHHHH
Q 000994 580 NSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALL 614 (1196)
Q Consensus 580 ~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL 614 (1196)
.++.-+++|| |+... ..+|..+
T Consensus 218 -----------eartPLIISg-p~~~~-~~lY~~~ 239 (997)
T 2ipc_A 218 -----------EARTPLIISG-PAEKA-TDLYYKM 239 (997)
T ss_dssp -----------STTSCEEEEE-SCSSC-HHHHHHH
T ss_pred -----------CCCCCeeeeC-CCccc-hHHHHHH
Confidence 3344599999 88777 4454433
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.18 E-value=0.0021 Score=80.17 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=56.2
Q ss_pred chhhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHHHHHHhC
Q 000994 431 ELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISRFC 509 (1196)
Q Consensus 431 ~~l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~Ei~k~~ 509 (1196)
..+...|-+.|.+||...+. ...-.|+.-.+|+|||.+.+.++.++.... .++||++|... +.+-...+....
T Consensus 184 ~~~~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 184 TFFNTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp CCSSTTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhcC
Confidence 34566899999999988764 333468888899999999999998887643 58999999766 666666676543
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.56 E-value=0.013 Score=72.66 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=91.9
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccH-HHHHHHHHHhCCCCc
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL-NNWADEISRFCPDLK 513 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll-~nW~~Ei~k~~p~l~ 513 (1196)
..|-+.|.+++..++ .+...++--.+|.|||.++..++..+.... ..++||++|.... .+-...+.+.. ++
T Consensus 179 ~~ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~~i~~l~~~~--~~~ilv~a~tn~A~~~l~~~l~~~~--~~ 250 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQG--NGPVLVCAPSNIAVDQLTEKIHQTG--LK 250 (624)
T ss_dssp CCCCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHHHHHHHHTSS--SCCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred CCCCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHHHHHHHHHcC--CCeEEEEeCcHHHHHHHHHHHHhcC--Ce
Confidence 368999999998766 233567788899999999988888776432 2589999998764 45555555432 22
Q ss_pred cccccCChh-----------------------hHHHHhhccCc---------ccc--------cccCCCceEEEEehhhH
Q 000994 514 TLPYWGGLQ-----------------------ERMVLRKNINP---------KRL--------YRRDAGFHILITSYQLL 553 (1196)
Q Consensus 514 v~~y~G~~~-----------------------~r~~l~~~~~~---------~~~--------~~~~~~~~VvItSYe~l 553 (1196)
++...+... ....+...... +.+ ..-....+||++|...+
T Consensus 251 ~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 251 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred EEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 221111000 00000000000 000 00013457888887665
Q ss_pred HhcHhhhhccCccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCC
Q 000994 554 VADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQ 604 (1196)
Q Consensus 554 ~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiq 604 (1196)
.. ..+....|++||||||..+-.+.+ + +.-+....+++|-|=|-|
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~~--l--i~l~~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPEC--M--VPVVLGAKQLILVGDHCQ 375 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHHH--H--HHHTTTBSEEEEEECTTS
T ss_pred cc--hhhhcCCCCEEEEecccccCcHHH--H--HHHHhcCCeEEEecChhc
Confidence 43 335667899999999966544321 1 222234568999999987
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.31 E-value=0.014 Score=71.63 Aligned_cols=132 Identities=16% Similarity=0.148 Sum_probs=82.5
Q ss_pred hccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCc
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLK 513 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~ 513 (1196)
...|-+.|..++..+. .+...++--..|.|||.++.+++..+.... .++++++|.........|.... .
T Consensus 187 ~~~L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~ApT~~Aa~~L~e~~~~----~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLCAPTGKAARRLGEVTGR----T 255 (574)
T ss_dssp TTTCCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHTS----C
T ss_pred cCCCCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEecCcHHHHHHhHhhhcc----c
Confidence 4578899999998876 345678888999999998888877765532 5899999988776655553210 0
Q ss_pred cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhcccc
Q 000994 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCR 593 (1196)
Q Consensus 514 v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~ 593 (1196)
.. .. ...+.. .. . .+ ..+ .-....+++|||||+|.+-.. .....+..+...
T Consensus 256 a~------Ti----h~ll~~------~~--~----~~---~~~--~~~~~~~dvlIIDEasml~~~--~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 256 AS------TV----HRLLGY------GP--Q----GF---RHN--HLEPAPYDLLIVDEVSMMGDA--LMLSLLAAVPPG 306 (574)
T ss_dssp EE------EH----HHHTTE------ET--T----EE---SCS--SSSCCSCSEEEECCGGGCCHH--HHHHHHTTSCTT
T ss_pred HH------HH----HHHHcC------Cc--c----hh---hhh--hcccccCCEEEEcCccCCCHH--HHHHHHHhCcCC
Confidence 00 00 000000 00 0 00 000 012247899999999998432 333334455677
Q ss_pred ceEEeecCCCCC
Q 000994 594 NRLLLTGTPIQN 605 (1196)
Q Consensus 594 ~RllLTGTPiqN 605 (1196)
.+++|.|-|-|.
T Consensus 307 ~~lilvGD~~QL 318 (574)
T 3e1s_A 307 ARVLLVGDTDQL 318 (574)
T ss_dssp CEEEEEECTTSC
T ss_pred CEEEEEeccccc
Confidence 899999999884
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.30 E-value=0.023 Score=67.68 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=82.9
Q ss_pred ccCcHHHHHHHHHHHHhhhcCC-CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhCCCCc
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGL-NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLK 513 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~-ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~p~l~ 513 (1196)
..|-+-|.+++..+......+. ..+|--..|.|||..+.+++.++..... ..+++++|...... ++.... ...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa~---~l~~~~-~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAKK---ILSKLS-GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHHH---HHHHHH-SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHHH---HHHhhh-ccc
Confidence 3789999999998876655544 5688888999999999888888876532 47899999876443 222111 000
Q ss_pred cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHh-ccc
Q 000994 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS-FNC 592 (1196)
Q Consensus 514 v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~-l~~ 592 (1196)
+..++ ..+.. .+.. ......+.... .-...+++++|+||+|.+. ......+.. +..
T Consensus 98 ~~T~h------~~~~~--~~~~----~~~~~~~~~~~--------~~~~~~~~~iiiDE~~~~~---~~~~~~l~~~~~~ 154 (459)
T 3upu_A 98 ASTIH------SILKI--NPVT----YEENVLFEQKE--------VPDLAKCRVLICDEVSMYD---RKLFKILLSTIPP 154 (459)
T ss_dssp EEEHH------HHHTE--EEEE----CSSCEEEEECS--------CCCCSSCSEEEESCGGGCC---HHHHHHHHHHSCT
T ss_pred hhhHH------HHhcc--Cccc----ccccchhcccc--------cccccCCCEEEEECchhCC---HHHHHHHHHhccC
Confidence 00000 00000 0000 00111111100 0112368999999999873 234444443 456
Q ss_pred cceEEeecCCCCC
Q 000994 593 RNRLLLTGTPIQN 605 (1196)
Q Consensus 593 ~~RllLTGTPiqN 605 (1196)
..++++.|-|-|.
T Consensus 155 ~~~~~~vGD~~Ql 167 (459)
T 3upu_A 155 WCTIIGIGDNKQI 167 (459)
T ss_dssp TCEEEEEECTTSC
T ss_pred CCEEEEECCHHHc
Confidence 7789999999873
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.023 Score=72.38 Aligned_cols=155 Identities=16% Similarity=0.233 Sum_probs=92.2
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccH-HHHHHHHHHhCCCCc
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL-NNWADEISRFCPDLK 513 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll-~nW~~Ei~k~~p~l~ 513 (1196)
..|-+.|.+++..++ .+.-.++--..|.|||.++..++..+....+ .++||++|.... .+-...+.+.. ++
T Consensus 359 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~--~~ILv~a~tn~A~d~l~~rL~~~g--~~ 430 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSATIVYHLSKIHK--DRILVCAPSNVAVDHLAAKLRDLG--LK 430 (802)
T ss_dssp CCCCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSHHHHHHHHHHHHHTT--CC
T ss_pred ccCCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHHHHHHHHhCCC--CeEEEEcCcHHHHHHHHHHHHhhC--cc
Confidence 468999999998765 2334677888999999999888887765322 589999998764 45555566542 22
Q ss_pred cccccCChh-----------hHHHHhh-----------------ccCcc---cc--------cccCCCceEEEEehhhHH
Q 000994 514 TLPYWGGLQ-----------ERMVLRK-----------------NINPK---RL--------YRRDAGFHILITSYQLLV 554 (1196)
Q Consensus 514 v~~y~G~~~-----------~r~~l~~-----------------~~~~~---~~--------~~~~~~~~VvItSYe~l~ 554 (1196)
++...+... -...+.. .+... .+ .......+||++|...+.
T Consensus 431 ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 510 (802)
T 2xzl_A 431 VVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG 510 (802)
T ss_dssp EEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG
T ss_pred EEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC
Confidence 221111000 0000000 00000 00 001134578988887665
Q ss_pred hcHhhhhccCccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCC
Q 000994 555 ADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQ 604 (1196)
Q Consensus 555 ~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiq 604 (1196)
. ..+.. .|++||||||+.+..+. . .+..+....+++|-|=|-|
T Consensus 511 ~--~~L~~-~fd~viIDEA~q~~e~~--~--li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 511 D--KRLDT-KFRTVLIDESTQASEPE--C--LIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp C--TTCCS-CCSEEEETTGGGSCHHH--H--HHHHTTTBSEEEEEECTTS
T ss_pred h--HHHhc-cCCEEEEECccccchHH--H--HHHHHhCCCEEEEEeCccc
Confidence 3 23444 89999999998764332 1 1222344578999999977
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.01 E-value=0.029 Score=71.44 Aligned_cols=156 Identities=19% Similarity=0.269 Sum_probs=91.6
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccH-HHHHHHHHHhCCCCc
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL-NNWADEISRFCPDLK 513 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll-~nW~~Ei~k~~p~l~ 513 (1196)
..|-+.|.+++...+ .+.-.++--.+|.|||.++..++..+.... ..++||++|.... .+-...+.+.. ++
T Consensus 355 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~~~i~~l~~~~--~~~ilv~a~tn~A~~~l~~~l~~~g--~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQG--NGPVLVCAPSNIAVDQLTEKIHQTG--LK 426 (800)
T ss_dssp CCCCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHHHHHHHHHTTC--SSCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred cCCCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHHHHHHHHHHcC--CCcEEEEcCcHHHHHHHHHHHHHhC--cc
Confidence 468999999998765 233467888899999999988888776432 2589999998764 34444454432 22
Q ss_pred cccccCChhh-----------HH------------HHhhc------cCc---ccc--------cccCCCceEEEEehhhH
Q 000994 514 TLPYWGGLQE-----------RM------------VLRKN------INP---KRL--------YRRDAGFHILITSYQLL 553 (1196)
Q Consensus 514 v~~y~G~~~~-----------r~------------~l~~~------~~~---~~~--------~~~~~~~~VvItSYe~l 553 (1196)
++...+...+ .. .+... +.. +.+ ..-....+||++|...+
T Consensus 427 vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~ 506 (800)
T 2wjy_A 427 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 506 (800)
T ss_dssp EEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGG
T ss_pred eEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhh
Confidence 2111110000 00 00000 000 000 00012357888887765
Q ss_pred HhcHhhhhccCccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCC
Q 000994 554 VADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQ 604 (1196)
Q Consensus 554 ~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiq 604 (1196)
.. ..+....|++||||||..+-.+. ..+..+....+++|-|=|-|
T Consensus 507 ~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 507 GD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp GC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred CC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEeccccc
Confidence 43 23566789999999996654332 11222344578999999987
No 101
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.60 E-value=0.098 Score=60.78 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=89.8
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHHHHHHhC---C
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISRFC---P 510 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~Ei~k~~---p 510 (1196)
..|.|||..-+..|. ...-.++.-.-+.|||..+.+++.+.....+ ...+++++|..- ...+-+++..++ |
T Consensus 162 ~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-SCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 479999999887663 2234677778999999988777766544322 246888988643 333446666553 3
Q ss_pred CC-ccccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHh
Q 000994 511 DL-KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS 589 (1196)
Q Consensus 511 ~l-~v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~ 589 (1196)
.+ +.. + ...+...+.-..+. .+.+.+ .+...+.....+++|+||+|.+++. ...+.++..
T Consensus 237 ~ll~~~-~-----------~~~~~~~I~f~nGs-~i~~ls-----a~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~ 297 (385)
T 2o0j_A 237 DFLQPG-I-----------VEWNKGSIELDNGS-SIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQP 297 (385)
T ss_dssp TTTSCC-E-----------EEECSSEEEETTSC-EEEEEE-----CSHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHH
T ss_pred Hhhhhh-h-----------ccCCccEEEeCCCC-EEEEEE-----CCCCCccCCCCCEEEechhhhcCCC-HHHHHHHHH
Confidence 21 100 0 00000011001122 222222 2456677888999999999999863 244444443
Q ss_pred -cc--ccceEEeecCCCCCChHHHHHHHH
Q 000994 590 -FN--CRNRLLLTGTPIQNNMAELWALLH 615 (1196)
Q Consensus 590 -l~--~~~RllLTGTPiqN~l~EL~sLL~ 615 (1196)
+. ...++++++||-..+ -+|.+..
T Consensus 298 ~ls~~~~~kiiiiSTP~g~n--~fy~l~~ 324 (385)
T 2o0j_A 298 VISSGRRSKIIITTTPNGLN--HFYDIWT 324 (385)
T ss_dssp HHHSTTCCEEEEEECCCSSS--HHHHHHH
T ss_pred HhhcCCCCcEEEEeCCCCch--hHHHHHH
Confidence 22 357899999996554 4444443
No 102
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.13 E-value=0.053 Score=67.00 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=79.3
Q ss_pred cHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhc-ccCCcEEEEeCCccHHHHH-HHHHHhCCCCccc
Q 000994 438 KEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEK-NIWGPFLVVAPASVLNNWA-DEISRFCPDLKTL 515 (1196)
Q Consensus 438 rpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~-~~~gp~LIV~P~sll~nW~-~Ei~k~~p~l~v~ 515 (1196)
-+.|..++.-.+ .+...++--..|.|||.++..++..+.... ....++++++|......-. +.+..+...+.+-
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 468999987665 455678889999999988877777765431 1123789999987655433 3333321111100
Q ss_pred cccCChhhHHHHhhccCcccccccCCCceEEEEehh--hHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhcccc
Q 000994 516 PYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQ--LLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCR 593 (1196)
Q Consensus 516 ~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe--~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~ 593 (1196)
..... .+. .....+. .++-.+.. .+... ......++++|||||+.+. .......+..+...
T Consensus 227 ~~~~~-----~~~--~~~~Tih------~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 227 DEQKK-----RIP--EDASTLH------RLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMID--LPMMSRLIDALPDH 289 (608)
T ss_dssp SCCCC-----SCS--CCCBTTT------SCC-----------C--TTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTT
T ss_pred HHHHh-----ccc--hhhhhhH------hhhccCCCchHHHhc--cCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCC
Confidence 00000 000 0000000 00000000 01000 1122378999999999774 22334445566778
Q ss_pred ceEEeecCCCCCCh
Q 000994 594 NRLLLTGTPIQNNM 607 (1196)
Q Consensus 594 ~RllLTGTPiqN~l 607 (1196)
.+++|.|=|-|-..
T Consensus 290 ~~liLvGD~~QL~~ 303 (608)
T 1w36_D 290 ARVIFLGDRDQLAS 303 (608)
T ss_dssp CEEEEEECTTSGGG
T ss_pred CEEEEEcchhhcCC
Confidence 89999999987543
No 103
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.99 E-value=0.058 Score=56.07 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=26.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
-++.-.||.|||..++.++..+.... .+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeec
Confidence 46778899999999888776665432 478888887
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.92 E-value=0.14 Score=63.10 Aligned_cols=151 Identities=18% Similarity=0.152 Sum_probs=87.8
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHHHHHHhCCCCc
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISRFCPDLK 513 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~Ei~k~~p~l~ 513 (1196)
..|.|||..-+..|. .....++.-.-|.|||..+.+++.+.....+ ...+++++|..- .......+..++-...
T Consensus 162 ~~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred CcCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 478999999887662 2344677778999999987766666554433 247899999543 3344466666542221
Q ss_pred cccccCChhhHHHHhhccCcccccccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhc-c-
Q 000994 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF-N- 591 (1196)
Q Consensus 514 v~~y~G~~~~r~~l~~~~~~~~~~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l-~- 591 (1196)
...-.+. .......+.- ..+..+... ..+...+.....+++|+||+|.+++.. ..+.++... .
T Consensus 237 ~~~~~~~--------~~~~~~~i~~-~nGs~i~~~-----s~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~ 301 (592)
T 3cpe_A 237 DFLQPGI--------VEWNKGSIEL-DNGSSIGAY-----ASSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISS 301 (592)
T ss_dssp TTTSCCE--------EEECSSEEEE-TTSCEEEEE-----ECCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSS
T ss_pred Hhhcccc--------ccCCccEEEe-cCCCEEEEE-----eCCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhcc
Confidence 1100000 0001111100 112222222 234556777789999999999997742 455555433 2
Q ss_pred -ccceEEeecCCCCC
Q 000994 592 -CRNRLLLTGTPIQN 605 (1196)
Q Consensus 592 -~~~RllLTGTPiqN 605 (1196)
...++++++||-..
T Consensus 302 ~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 302 GRRSKIIITTTPNGL 316 (592)
T ss_dssp SSCCEEEEEECCCTT
T ss_pred CCCceEEEEeCCCCc
Confidence 34789999999655
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.52 E-value=0.19 Score=53.86 Aligned_cols=45 Identities=22% Similarity=0.204 Sum_probs=29.3
Q ss_pred HHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 448 LVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 448 L~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
|......|.-.++.-+||.|||..++.++..+.... ..++++.|.
T Consensus 5 ~~~~~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~ 49 (223)
T 2b8t_A 5 NAFSKKIGWIEFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPK 49 (223)
T ss_dssp ------CCEEEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred hhhccCCcEEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEec
Confidence 333333444457788999999999998887776542 477888775
No 106
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=92.95 E-value=0.72 Score=56.87 Aligned_cols=69 Identities=19% Similarity=0.121 Sum_probs=48.6
Q ss_pred hccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhccc-CCcEEEEeCCcc-HHHHHHHHHHh
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAPASV-LNNWADEISRF 508 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~-~gp~LIV~P~sl-l~nW~~Ei~k~ 508 (1196)
-..|-+.|.++|.. .....++---.|.|||.+.+.-++++....+. ...+|+|++... ..+-.+.+.+.
T Consensus 7 ~~~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 7 LDSLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp HTTCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 35789999999951 23345666679999999999999988876432 247999998654 33444445544
No 107
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=92.80 E-value=0.22 Score=60.48 Aligned_cols=133 Identities=20% Similarity=0.201 Sum_probs=81.4
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC-ccHHHHHHHHHHhCCCCcc
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPDLKT 514 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~-sll~nW~~Ei~k~~p~l~v 514 (1196)
.++|+|.+.+.-+......+..+++-..+|.|||+..+.-+ +.. .++++|++|. .+..||.+++.++ ++++
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~--~~~----~~~~~~~~~t~~l~~q~~~~~~~l--~~~~ 78 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLG--MQL----KKKVLIFTRTHSQLDSIYKNAKLL--GLKT 78 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHH--HHH----TCEEEEEESCHHHHHHHHHHHGGG--TCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHH--HhC----CCcEEEEcCCHHHHHHHHHHHHhc--CCcE
Confidence 78999999988777777788899999999999998654333 221 2689999995 5577899999885 2334
Q ss_pred ccccCChh------hHHH----------Hh------------hccCc---------ccc-cccCCCceEEEEehhhHHhc
Q 000994 515 LPYWGGLQ------ERMV----------LR------------KNINP---------KRL-YRRDAGFHILITSYQLLVAD 556 (1196)
Q Consensus 515 ~~y~G~~~------~r~~----------l~------------~~~~~---------~~~-~~~~~~~~VvItSYe~l~~d 556 (1196)
....|... .... +. ..|.. ... -......+|||++|+.+..+
T Consensus 79 ~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~ 158 (540)
T 2vl7_A 79 GFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQK 158 (540)
T ss_dssp EEC---------------------------------------------------------CTTGGGCSEEEEETHHHHSH
T ss_pred EEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCH
Confidence 33333110 0000 00 00000 000 00123458999999999875
Q ss_pred Hhh--hh-------ccCccEEEECCCccc
Q 000994 557 EKY--FR-------RVKWQYMVLDEAQAI 576 (1196)
Q Consensus 557 ~~~--l~-------~~~w~~VIlDEAH~i 576 (1196)
... +. ..+..+||+||||++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~vIiDEAHnl 187 (540)
T 2vl7_A 159 PIRNSVFCNKDDCLKLEDYLIVIDEAHNL 187 (540)
T ss_dssp HHHHHHSCSSTTSCCGGGEEEEETTGGGG
T ss_pred HHHHhhCcccccccCcCCCEEEEEccccH
Confidence 432 21 135689999999999
No 108
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=92.67 E-value=0.2 Score=62.42 Aligned_cols=76 Identities=28% Similarity=0.330 Sum_probs=58.3
Q ss_pred cCcHHHHHHHHHHHHhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHHHHHHhCCCCc
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLN-GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISRFCPDLK 513 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~g-gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~Ei~k~~p~l~ 513 (1196)
.+.++|-.++.-+......|.. ..|.--+|.|||+++..++..+ .+|+|||+|... ..+|.+||..|+|+..
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~------~~~~lvv~~~~~~A~ql~~el~~~~~~~~ 81 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELFPENA 81 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCTTSE
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh------CCCEEEEecCHHHHHHHHHHHHHHCCCCe
Confidence 5678898888877766666643 4577789999999988777544 269999999655 6789999999998765
Q ss_pred cccc
Q 000994 514 TLPY 517 (1196)
Q Consensus 514 v~~y 517 (1196)
|..|
T Consensus 82 V~~f 85 (664)
T 1c4o_A 82 VEYF 85 (664)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5443
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.21 E-value=0.4 Score=51.05 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=26.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS 496 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s 496 (1196)
++.-.||.|||..++..+....... ..+||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~g---~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFAK---QHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEecc
Confidence 4678899999999988877665432 5789998863
No 110
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.88 E-value=0.18 Score=59.52 Aligned_cols=107 Identities=12% Similarity=0.121 Sum_probs=66.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc-cHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCcccc
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS-VLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRL 536 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s-ll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~ 536 (1196)
.++.-..|.|||.....++.. .+.||++|.. +...|.+.+.+. |..
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~--------~~~lVlTpT~~aa~~l~~kl~~~----------~~~--------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF--------EEDLILVPGRQAAEMIRRRANAS----------GII--------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT--------TTCEEEESCHHHHHHHHHHHTTT----------SCC---------------
T ss_pred EEEEcCCCCCHHHHHHHHhcc--------CCeEEEeCCHHHHHHHHHHhhhc----------Ccc---------------
Confidence 467778999999877665521 4779999964 456788887432 000
Q ss_pred cccCCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCC
Q 000994 537 YRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQ 604 (1196)
Q Consensus 537 ~~~~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiq 604 (1196)
..-.+-+.|++.+............++||+||+..+ ......++..+....+++|.|=|-|
T Consensus 211 ----~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~---~~~~l~~l~~~~~~~~vilvGD~~Q 271 (446)
T 3vkw_A 211 ----VATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML---HTGCVNFLVEMSLCDIAYVYGDTQQ 271 (446)
T ss_dssp ----CCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS---CHHHHHHHHHHTTCSEEEEEECTTS
T ss_pred ----ccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC---CHHHHHHHHHhCCCCEEEEecCccc
Confidence 000123566766544333222345899999999876 2233334433333389999999977
No 111
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.68 E-value=0.44 Score=49.80 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=26.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
.++--.||.|||..++.++......+ ..++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g---~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAK---QKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEec
Confidence 36677899999998888776665332 578999886
No 112
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=90.88 E-value=0.37 Score=60.02 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=58.3
Q ss_pred cCcHHHHHHHHHHHHhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHHHHHHhCCCCc
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLN-GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISRFCPDLK 513 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~g-gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~Ei~k~~p~l~ 513 (1196)
.+..+|..++.-+......+.. ..|.--.|.|||+.+..++... .+|+|||+|... ..+|..|+..|+|+-.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~------~~~~lvv~~~~~~A~~l~~el~~~~~~~~ 85 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV------NKPTLVIAHNKTLAGQLYSEFKEFFPNNA 85 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------CCCEEEECSSHHHHHHHHHHHHHHCTTSE
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHHcCCCc
Confidence 4577999999877777666643 4567789999999887776543 269999999665 6689999999998765
Q ss_pred cccc
Q 000994 514 TLPY 517 (1196)
Q Consensus 514 v~~y 517 (1196)
|..|
T Consensus 86 v~~f 89 (661)
T 2d7d_A 86 VEYF 89 (661)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5443
No 113
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.53 E-value=0.58 Score=51.82 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=27.3
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhccc-CCcEEEEeCC
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAPA 495 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~-~gp~LIV~P~ 495 (1196)
+.+|.-+.|.|||..+-++...+...... .++++.+.+.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 46899999999999998888777654322 2365555443
No 114
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.42 E-value=1.4 Score=49.91 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHHHhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 437 LKEYQLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~~~~---ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
++|+|.+.+.-+.+...++. .-++.-+.|.|||..+.+++..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 57999999988888776654 25888899999999999998887654
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=87.94 E-value=2.2 Score=47.60 Aligned_cols=47 Identities=11% Similarity=-0.043 Sum_probs=30.8
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
+.+.+|.-+.|+|||..+-++...+... ..+++.+........+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~~~ 83 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMVEH 83 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHHHH
Confidence 3467899999999999888877776543 2466665444433333333
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.36 E-value=1.6 Score=46.89 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=25.3
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
+..-.||.|||-.+|..+...... ...++|+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeec
Confidence 667789999999888776655432 2578888875
No 117
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.76 E-value=2.8 Score=43.82 Aligned_cols=40 Identities=18% Similarity=-0.076 Sum_probs=27.0
Q ss_pred HHHHHHHHhhh--cCCCeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 443 KGLQWLVNCYE--QGLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 443 ~gl~wL~~~~~--~~~ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
..+..+..... .+.+.+|.-+.|.|||..+-++...+...
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34444444333 34556889999999999988877766543
No 118
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.73 E-value=5.7 Score=41.03 Aligned_cols=43 Identities=21% Similarity=0.105 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHH
Q 000994 438 KEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 438 rpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~ 480 (1196)
++..++.+...+.........+|.-+.|.|||..+-++...+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4555555544333211122468899999999988877766554
No 119
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.68 E-value=3.7 Score=40.91 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=21.3
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
..+.+|.-+.|.|||..+-++...+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345688899999999998888776644
No 120
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.66 E-value=3.1 Score=47.09 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHHHhhhcCC----CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 437 LKEYQLKGLQWLVNCYEQGL----NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 437 LrpyQl~gl~wL~~~~~~~~----ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
-.+.+.+.+.++......+. +.+|.-+.|.|||..+-++...+... .|++.+...
T Consensus 48 G~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~----~~~~~~~~~ 106 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD----TPFTAIAGS 106 (368)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS----CCEEEEEGG
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc----CCcccccch
Confidence 35677777777776665543 46899999999999998887776421 366555543
No 121
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=85.65 E-value=3 Score=46.49 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=27.0
Q ss_pred CccEEEECCCcccc-C-cccHHHHHHHhccccceEEeecCCCCC
Q 000994 564 KWQYMVLDEAQAIK-S-SNSIRWKTLLSFNCRNRLLLTGTPIQN 605 (1196)
Q Consensus 564 ~w~~VIlDEAH~iK-n-~~S~~~kal~~l~~~~RllLTGTPiqN 605 (1196)
...++|+||+|.+. . ......+.+.......++++|.++...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 56789999999994 2 222233334444566788888877553
No 122
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.42 E-value=7.5 Score=39.62 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=20.3
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
+.+|.-+.|.|||..+-++...+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4788999999999988877766543
No 123
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.54 E-value=1.1 Score=50.29 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=26.3
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
.+.+|.-+.|.|||..+-++...+.........++-+.|.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 3478999999999999888877765321111244445444
No 124
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=84.47 E-value=2.5 Score=53.58 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=93.7
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHH---------------------------------------
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMN--------------------------------------- 1093 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~--------------------------------------- 1093 (1196)
+...|+.++.+-+.+..+.|.-|||++.....-..|..+|.
T Consensus 424 t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (997)
T 2ipc_A 424 TEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPA 503 (997)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSST
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccc
Confidence 56789999998899998999999999999988888888887
Q ss_pred -------------------------------------hCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEecCcccc
Q 000994 1094 -------------------------------------YRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1196)
Q Consensus 1094 -------------------------------------~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLSTrAGGl 1136 (1196)
.+|+++-.|..... +.=..+|++=- ..-.+-++|..+|-
T Consensus 504 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~h-e~EAeIIAqAG---~~GaVTIATNMAGR 579 (997)
T 2ipc_A 504 QLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHH-AREAEIVAQAG---RSKTVTIATNMAGR 579 (997)
T ss_dssp TCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSH-HHHHHHHHTTT---STTCEEEECSSTTT
T ss_pred cccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccch-HHHHHHHHhcC---CCCeEEEEecccCC
Confidence 57888888886643 22234555432 22244668899998
Q ss_pred ccCcccC-------------------C-----------------------------------------------------
Q 000994 1137 GINLTAA-------------------D----------------------------------------------------- 1144 (1196)
Q Consensus 1137 GINLTaA-------------------d----------------------------------------------------- 1144 (1196)
|-++.-. +
T Consensus 580 GTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~G 659 (997)
T 2ipc_A 580 GTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALG 659 (997)
T ss_dssp TSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcC
Confidence 8775321 2
Q ss_pred --EEEEeCCCCCcchHHHHHHhhhccCCCCcEEEE
Q 000994 1145 --TVIFYESDWNPTLDLQAMDRAHRLGQTKDVSSW 1177 (1196)
Q Consensus 1145 --tVIfyDsdWNPt~d~QAmdRahRiGQtK~VtVY 1177 (1196)
+||--+-.=|..+|.|..||++|-|..-.-..|
T Consensus 660 GLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~ 694 (997)
T 2ipc_A 660 GLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFY 694 (997)
T ss_dssp CCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEE
T ss_pred CeEEEeccCCchHHHHHHHhcccccCCCCCCeEEE
Confidence 899999999999999999999999997765554
No 125
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=84.20 E-value=5.6 Score=39.51 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.5
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
.+.+|.-+.|.|||..+-+++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999998888777654
No 126
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=83.83 E-value=6.5 Score=43.25 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.2
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~ 480 (1196)
+.+|.-+.|.|||..+-++...+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 478899999999999888877764
No 127
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=83.66 E-value=2.8 Score=44.56 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=24.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS 496 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s 496 (1196)
++.-+||.|||...+-.+...... + ..++|+.|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~-g--~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYA-K--QKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHT-T--CCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc-C--CceEEEEecc
Confidence 677789999998777776544433 2 4788888853
No 128
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=83.42 E-value=3.1 Score=43.53 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=25.1
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
++.-.||+|||...+-.+......+ ..++++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 6678899999977776666554432 578888886
No 129
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=82.76 E-value=1.7 Score=48.70 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=25.0
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV 497 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl 497 (1196)
.+.+|.-+.|.|||..+-++...+ ..+++.|....+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l 87 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDL 87 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHH
Confidence 356889999999999887776543 146666654433
No 130
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.53 E-value=1.6 Score=47.65 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=24.8
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
.+.+.+|.-+.|+|||..+-++...+ ..+++.|...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~ 85 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGS 85 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehH
Confidence 44567899999999998887765443 1455555443
No 131
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.28 E-value=3.1 Score=48.41 Aligned_cols=47 Identities=32% Similarity=0.314 Sum_probs=35.1
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~ 506 (1196)
...|.+|.-.+|.|||+.|=|++..+. .|++.|....++..|..|-.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~------~~f~~v~~s~l~sk~vGese 227 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD------CKFIRVSGAELVQKYIGEGS 227 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT------CEEEEEEGGGGSCSSTTHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC------CCceEEEhHHhhccccchHH
Confidence 345779999999999999888776542 47888888877766655543
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.81 E-value=4 Score=46.32 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHh-hhc--CCCeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 438 KEYQLKGLQWLVNC-YEQ--GLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 438 rpyQl~gl~wL~~~-~~~--~~ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
++.+++.+.-.+.. ... ..+.+|.-+.|.|||..+-+++..+...
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 55666666433332 222 2346889999999999988887776543
No 133
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=80.88 E-value=5.3 Score=44.60 Aligned_cols=38 Identities=11% Similarity=-0.074 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhcCC--CeEEEeCCCCChHHHHHHHHHH
Q 000994 441 QLKGLQWLVNCYEQGL--NGILADEMGLGKTIQAMAFLAH 478 (1196)
Q Consensus 441 Ql~gl~wL~~~~~~~~--ggILADeMGLGKTlqaIall~~ 478 (1196)
|.+.+..+.+...++. .-++.-+.|.|||-.+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3445555555554544 4588999999999888777653
No 134
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=80.35 E-value=5.3 Score=40.27 Aligned_cols=43 Identities=26% Similarity=0.194 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhh-----cCCCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 439 EYQLKGLQWLVNCYE-----QGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 439 pyQl~gl~wL~~~~~-----~~~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
+.|.+++..+..... .+.+.+|.-+.|.|||..+-+++..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 578888877765542 4556688889999999998888777653
No 135
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=79.03 E-value=2.1 Score=48.89 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=24.7
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
.+.+|.-+.|.|||..+-++...+. .+++.|...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~------~~~~~v~~~ 118 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEAN------STFFSVSSS 118 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT------CEEEEEEHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC------CCEEEeeHH
Confidence 4578899999999999887776551 365555433
No 136
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=78.94 E-value=9.6 Score=43.76 Aligned_cols=42 Identities=26% Similarity=0.280 Sum_probs=27.0
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWA 502 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~ 502 (1196)
..+.+|.-+.|.|||..+-++...+ ..+++.|.+..+...|.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSKYV 189 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC-----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhcccc
Confidence 3467999999999999887764432 25777777766655443
No 137
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=78.71 E-value=2.3 Score=41.68 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=20.5
Q ss_pred hhcCCCeEEEeCCCCChHHHHHHHHH
Q 000994 452 YEQGLNGILADEMGLGKTIQAMAFLA 477 (1196)
Q Consensus 452 ~~~~~ggILADeMGLGKTlqaIall~ 477 (1196)
...+.+.+|.-|.|.|||..|-++..
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHH
Confidence 34666789999999999988866543
No 138
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=75.86 E-value=7.6 Score=45.61 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=27.8
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV 497 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl 497 (1196)
.+.+|.-+.|+|||..+-++...+....+. .+++.+.....
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~-~~v~~v~~~~~ 171 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYITSEKF 171 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCS-SCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeHHHH
Confidence 457899999999999888877776554322 45555544333
No 139
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.35 E-value=9 Score=40.77 Aligned_cols=35 Identities=34% Similarity=0.406 Sum_probs=24.6
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS 496 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s 496 (1196)
.+.+|.-+.|.|||..+-++...+. .+++.+....
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~------~~~~~~~~~~ 74 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQ------VPFLAMAGAE 74 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT------CCEEEEETTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC------CCEEEechHH
Confidence 3568899999999998877765431 4666665544
No 140
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=75.11 E-value=9.8 Score=40.90 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=26.9
Q ss_pred hhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc
Q 000994 452 YEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS 496 (1196)
Q Consensus 452 ~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s 496 (1196)
...+.+.+|.-+.|+|||..+-++...... ...|++.|-...
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~~---~~~~~~~v~~~~ 67 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAA 67 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHTSTT---TTSCEEEEEGGG
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhcCc---cCCCeEEEecCC
Confidence 345667899999999999877665544321 124666554333
No 141
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=74.58 E-value=6.9 Score=44.10 Aligned_cols=44 Identities=30% Similarity=0.296 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHhh---hcCCCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 438 KEYQLKGLQWLVNCY---EQGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 438 rpyQl~gl~wL~~~~---~~~~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
++.+++.+.-.+... ..+.+.+|.-+.|.|||..+-+++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445555543322222 23446788999999999998888776654
No 142
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=74.30 E-value=3.2 Score=46.63 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=25.8
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV 497 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl 497 (1196)
.+.+|.-+.|.|||..+-++...+. ..+++.|....+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~-----~~~~~~i~~~~l 82 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSSDL 82 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTT-----SCEEEEEECCSS
T ss_pred ceEEEECCCCccHHHHHHHHHHHcC-----CCcEEEEEhHHH
Confidence 4568899999999999887776541 135665555444
No 143
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=73.74 E-value=17 Score=40.76 Aligned_cols=44 Identities=20% Similarity=0.080 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 438 KEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 438 rpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
++..++.+...+..-......+|.-+.|.|||..+-++...+..
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444444433332111223588999999999998888766643
No 144
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.88 E-value=8.3 Score=42.30 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=20.5
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
..+|.-+.|.|||..+-++...+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 3789999999999988888777643
No 145
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=70.56 E-value=5.4 Score=46.95 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=25.6
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHH
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWA 502 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~ 502 (1196)
.+.+|.-+.|.|||..+-++...+. ..+++.|....++..|.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~~v~~~~l~~~~~ 209 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSSDLVSKWL 209 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCC-----SSEEEEECCC-------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC-----CCCEEEEeHHHHHhhhc
Confidence 4568899999999998887776541 14666666665554443
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=70.51 E-value=28 Score=39.06 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=27.1
Q ss_pred cHHHHHHHH-HHHHhhh--cCC--CeEEEeCCCCChHHHHHHHHHHHH
Q 000994 438 KEYQLKGLQ-WLVNCYE--QGL--NGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 438 rpyQl~gl~-wL~~~~~--~~~--ggILADeMGLGKTlqaIall~~l~ 480 (1196)
++.+++.+. |+..... .+. ..+|.-+.|.|||..+-+++..+.
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 455555553 3333222 223 568899999999998877776654
No 147
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=70.43 E-value=6.7 Score=43.40 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=26.8
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN 499 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~ 499 (1196)
.+.+.+|.-+.|.|||..+-++...+. .+++.|....++.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~------~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKGPELLT 87 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT------CEEEEECHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhC------CCEEEEEhHHHHh
Confidence 445678899999999998877665431 4666554444433
No 148
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=70.23 E-value=21 Score=41.98 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=40.7
Q ss_pred HHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 444 GLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 444 gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
++..+..-+..|.-.+|+-..|.|||.-++.++..+....+ .+++++...-...++...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--~~Vl~~s~E~s~~~l~~r 250 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--ENVAIFSLEMSAQQLVMR 250 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--CCEEEEESSSCHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCCHHHHHHH
Confidence 34455544455656799999999999999988887765432 488998865444454444
No 149
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=67.61 E-value=18 Score=42.28 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=41.1
Q ss_pred HHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHH
Q 000994 445 LQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1196)
Q Consensus 445 l~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei 505 (1196)
+..+..-+..|.-.+|+-.+|.|||.-++.++.......+ .|++++...--..++...+
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSSCHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEECCCCHHHHHHHH
Confidence 4445533445555799999999999999988887765322 5889988765555555544
No 150
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=67.61 E-value=30 Score=35.02 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=62.3
Q ss_pred eCCCCChHHHHHHHHHHHHHhcccCCcEEEEe--CCccHHHHHHHHHHhCCCCccccccCChhhHHHHhhccCccccccc
Q 000994 462 DEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA--PASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRR 539 (1196)
Q Consensus 462 DeMGLGKTlqaIall~~l~~~~~~~gp~LIV~--P~sll~nW~~Ei~k~~p~l~v~~y~G~~~~r~~l~~~~~~~~~~~~ 539 (1196)
---|.|||..++.+...+...+ .++|+|- |...+..|... .
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g---~~vlliD~D~~~~~~~~~~~----------------------------------~ 51 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSG---YNIAVVDTDPQMSLTNWSKA----------------------------------G 51 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHTT----------------------------------S
T ss_pred CCCCccHHHHHHHHHHHHHHCC---CeEEEEECCCCCCHHHHHhc----------------------------------C
Confidence 3468999999999999888642 3677775 44445555430 0
Q ss_pred CCCceEEEEehhhHHhcHhhhhccCccEEEECCCccccCcccHHHHHHHhccccceEEeecCCCCCChHHHHHHHHhh
Q 000994 540 DAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFI 617 (1196)
Q Consensus 540 ~~~~~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKn~~S~~~kal~~l~~~~RllLTGTPiqN~l~EL~sLL~FL 617 (1196)
...++++-...+.+......+.. .+++||+|=.-.+ +.....+.. .+.. +++--+|-..+ ..+..++..+
T Consensus 52 ~~~~~~~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~----~~~~~~~l~-~ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 52 KAAFDVFTAASEKDVYGIRKDLA-DYDFAIVDGAGSL----SVITSAAVM-VSDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp CCSSEEEECCSHHHHHTHHHHTT-TSSEEEEECCSSS----SHHHHHHHH-HCSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred CCCCcEEecCcHHHHHHHHHhcC-CCCEEEEECCCCC----CHHHHHHHH-HCCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 01244444444555544444443 5899999977654 122222222 1333 44444555555 6666655554
No 151
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.44 E-value=9.6 Score=45.06 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=32.6
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
...|.+|.-.+|.|||+.|=|++..+. -+++.|....++..|..|
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD------ATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCCCSSSH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC------CCeEEEEhHHhhcccCCH
Confidence 345668899999999998887776542 477888777776655444
No 152
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=67.38 E-value=4.8 Score=39.29 Aligned_cols=23 Identities=22% Similarity=0.101 Sum_probs=18.1
Q ss_pred hcCCCeEEEeCCCCChHHHHHHH
Q 000994 453 EQGLNGILADEMGLGKTIQAMAF 475 (1196)
Q Consensus 453 ~~~~ggILADeMGLGKTlqaIal 475 (1196)
..+.+.+|.-+.|.|||..|-++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 45667899999999999766543
No 153
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=65.89 E-value=47 Score=37.19 Aligned_cols=45 Identities=4% Similarity=-0.096 Sum_probs=31.5
Q ss_pred cHHHHHHHH-HHHHhhhcC--CCeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 438 KEYQLKGLQ-WLVNCYEQG--LNGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 438 rpyQl~gl~-wL~~~~~~~--~ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
|+-|...+. ++......+ .+.+|.-.+|+|||.++-+++..+...
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 556666664 444444333 345788999999999999988888653
No 154
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=65.46 E-value=16 Score=40.44 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=27.6
Q ss_pred hcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc
Q 000994 453 EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV 497 (1196)
Q Consensus 453 ~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl 497 (1196)
....+.+|.-|.|+|||..+-++...... ..+|++.|-...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~---~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSAR---SDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSC---SSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcc---cCCCeEEEeCCCC
Confidence 35667899999999999887665543321 2357766644443
No 155
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.24 E-value=23 Score=42.34 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=19.7
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHH
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHL 479 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l 479 (1196)
.+.+|.-+.|.|||..+-++...+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 456889999999999888777655
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=65.21 E-value=20 Score=40.05 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHhh---hcCCCeEEEeCCCCChHHHHHHHHHHHHHh
Q 000994 438 KEYQLKGLQWLVNCY---EQGLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1196)
Q Consensus 438 rpyQl~gl~wL~~~~---~~~~ggILADeMGLGKTlqaIall~~l~~~ 482 (1196)
++.+++.+.-.+... ..+...+|.-+.|.|||..+-+++..+...
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 555655553333221 224456889999999999888877766543
No 157
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=64.46 E-value=7.9 Score=42.73 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=24.9
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV 497 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl 497 (1196)
+.+|.-++|.|||..+-++...+. .+++.|....+
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~------~~~i~v~~~~l 72 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMG------INPIMMSAGEL 72 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT------CCCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeHHHh
Confidence 457779999999999888776651 36666654443
No 158
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=61.72 E-value=11 Score=45.05 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=24.3
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P 494 (1196)
...+.+|.-+.|+|||..+-++...+ ..|++.|-.
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~vn~ 271 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANET------GAFFFLING 271 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEEEH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEEEc
Confidence 34467899999999999887764432 246666543
No 159
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=61.43 E-value=18 Score=44.17 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhc-----------ccCCcEEEEeCCccHHHHH
Q 000994 445 LQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEK-----------NIWGPFLVVAPASVLNNWA 502 (1196)
Q Consensus 445 l~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~-----------~~~gp~LIV~P~sll~nW~ 502 (1196)
++-+......+...+|.-+.|.|||..+-++...+.... ....|.+.++|.....+-.
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~ 118 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIV 118 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHH
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHH
Confidence 333333445777889999999999988877665543221 0125677778776644433
No 160
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.86 E-value=5.8 Score=46.63 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=32.8
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
..|.+|.-.+|.|||..|=|++..+. .|++.|....++..|..|
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~------~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN------ATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCSSCSSH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC------CCEEEEehhhhhhcccch
Confidence 44678899999999999887776542 478888877776655444
No 161
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.38 E-value=11 Score=44.28 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=33.5
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei 505 (1196)
..|.+|.-.+|.|||+.|-|++..+. -+++.|....++..|..|-
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~~s~l~sk~vGes 260 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVGSELIQKYLGDG 260 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEESGGGCCSSSSHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC------CCEEEEEHHHhhhccCchH
Confidence 45679999999999999888776542 4788888777766665443
No 162
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=59.99 E-value=13 Score=40.49 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=19.5
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHL 479 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l 479 (1196)
+.+.+|.-+.|.|||..+-++...+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4566889999999999887766543
No 163
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=59.96 E-value=7.6 Score=44.16 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=25.5
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV 497 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl 497 (1196)
..+.+|.-+.|.|||..+-++...+ ..+++.|....+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l 153 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSL 153 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHh
Confidence 4466899999999999887776543 146665554433
No 164
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=59.36 E-value=60 Score=33.24 Aligned_cols=50 Identities=26% Similarity=0.341 Sum_probs=32.4
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~ 506 (1196)
.|.-.+|.-+.|.|||..+..++..+.... ++++++.......+....+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~~~~~~~~~~~ 71 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEESRDSIIRQAK 71 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSSCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEcccCHHHHHHHHH
Confidence 444567888999999998887776655432 57777765444444333333
No 165
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.26 E-value=27 Score=38.94 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhcCCC--eEEEeCCCCChHHHHHHHHHHHH
Q 000994 443 KGLQWLVNCYEQGLN--GILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 443 ~gl~wL~~~~~~~~g--gILADeMGLGKTlqaIall~~l~ 480 (1196)
..++.+......|.- .+|.-+.|.|||..+-++...+.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 334444433344432 68889999999999988887764
No 166
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.21 E-value=8.5 Score=45.24 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=32.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
..|.+|.-.+|.|||..|=|++..+. -|++.|....++..|..|
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGTCCSSSSH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEehhhhccccchH
Confidence 35678899999999999988776552 477777777666555444
No 167
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=56.11 E-value=5.8 Score=43.51 Aligned_cols=24 Identities=29% Similarity=0.366 Sum_probs=20.2
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~ 480 (1196)
+.+|.-+.|.|||..+-++...+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 478999999999998888877664
No 168
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=55.52 E-value=35 Score=36.58 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=18.3
Q ss_pred CeEEEeCCCCChHHHHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAH 478 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~ 478 (1196)
+.+|.-+.|.|||..+-++...
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4688899999999988777665
No 169
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.18 E-value=11 Score=44.14 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=31.6
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
..|.+|.-.+|.|||..|=|++..+. .+++.|....++..|..|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~------~~~~~v~~~~l~~~~~Ge 249 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVNGSEFVHKYLGE 249 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHT------CEEEEEEGGGTCCSSCSH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC------CCeEEEecchhhccccch
Confidence 34568899999999999888776552 477777777665544333
No 170
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=55.14 E-value=14 Score=38.70 Aligned_cols=53 Identities=28% Similarity=0.347 Sum_probs=37.2
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHh
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~ 508 (1196)
.|.-.+++-++|.|||.-++.++.......+ ++++++.-.....+..+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~--~~v~~~s~E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CCceeecccCCHHHHHHHHHHc
Confidence 3444699999999999999888776544332 5888888765555555555544
No 171
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=54.33 E-value=36 Score=42.04 Aligned_cols=54 Identities=28% Similarity=0.377 Sum_probs=35.7
Q ss_pred ccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc
Q 000994 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS 496 (1196)
Q Consensus 435 ~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s 496 (1196)
+.+-..|.+++..+.... .+. .+|-..-|-|||..+-.+++.+. +..+|.+|..
T Consensus 174 ~~~T~dQ~~al~~~~~~~-~~~-~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~ 227 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMP-PGV-AAVTAARGRGKSALAGQLISRIA------GRAIVTAPAK 227 (671)
T ss_dssp SSCCHHHHHHHHHHTTCC-SEE-EEEEECTTSSHHHHHHHHHHHSS------SCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHHhh-hCe-EEEecCCCCCHHHHHHHHHHHHH------hCcEEECCCH
Confidence 467889999998777543 232 35555699999955544444442 3458888854
No 172
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=53.25 E-value=32 Score=39.31 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=38.8
Q ss_pred HHHHHHH--hhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHH
Q 000994 444 GLQWLVN--CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWA 502 (1196)
Q Consensus 444 gl~wL~~--~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~ 502 (1196)
+|..++. -+..|.-.+|+-..|.|||..++.++....... +++++|.......+|.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g---~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDAEHALDPVY 118 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC---CeEEEEECCCChhHHH
Confidence 3444442 233444568899999999999999888776432 5888888776666653
No 173
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=52.72 E-value=44 Score=36.32 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=25.0
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P 494 (1196)
..+|.-+.|.|||..+-++...+.... +|++.+-.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~ 83 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDM 83 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeec
Confidence 468899999999998887776664322 46665543
No 174
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=52.10 E-value=59 Score=33.77 Aligned_cols=51 Identities=22% Similarity=0.126 Sum_probs=36.0
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k 507 (1196)
.|.-.+|+-+.|.|||..++.++...... .++++++.-.....+..+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHHHHHHH
Confidence 44446888899999999998888777643 2578888876555555555543
No 175
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=52.04 E-value=32 Score=37.82 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHH
Q 000994 438 KEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLA 477 (1196)
Q Consensus 438 rpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~ 477 (1196)
|+.+++.+.-.+. .+...+|.-+.|.|||..+-.++.
T Consensus 17 R~~el~~L~~~l~---~~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 17 REEESRKLEESLE---NYPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp CHHHHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh---cCCeEEEECCCcCCHHHHHHHHHH
Confidence 6666666644332 345678889999999987666553
No 176
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=51.87 E-value=42 Score=42.41 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=64.7
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHH----HHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEE
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKML----NILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~ml----DlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfL 1128 (1196)
+.|||-.+..-.+......|.++||.+...... +-+..++...|++...+.|+++..+|+........ +++.|++
T Consensus 398 TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~-g~~~IvV 476 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN-GQIDVVI 476 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS-SCCCEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc-CCCCEEE
Confidence 779998765444444445688999998865543 34445555568999999999999999999988865 4455544
Q ss_pred EecCccccccCcccCCEEEEeCC
Q 000994 1129 LSTRAGGLGINLTAADTVIFYES 1151 (1196)
Q Consensus 1129 LSTrAGGlGINLTaAdtVIfyDs 1151 (1196)
.+....-..+++..-+.||+=+-
T Consensus 477 gT~~ll~~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 477 GTHALIQEDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp ECTTHHHHCCCCSCCCEEEEESC
T ss_pred ECHHHHhhhhhccCCceEEeccc
Confidence 43322223455666666665433
No 177
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=51.17 E-value=57 Score=33.27 Aligned_cols=55 Identities=15% Similarity=0.058 Sum_probs=34.0
Q ss_pred HHHHHHH-hhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCc--cHHHHHHH
Q 000994 444 GLQWLVN-CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS--VLNNWADE 504 (1196)
Q Consensus 444 gl~wL~~-~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~s--ll~nW~~E 504 (1196)
++..++. -+..|.-.+|+-..|.|||..+..++. . . .++++++.-.. ....|.+-
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~---~~~v~~i~~~~~~~~~~~~~~ 65 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-S---GKKVAYVDTEGGFSPERLVQM 65 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-H---CSEEEEEESSCCCCHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-c---CCcEEEEECCCCCCHHHHHHH
Confidence 3444442 233454568889999999998887776 2 1 25777776543 34455543
No 178
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=50.49 E-value=36 Score=38.54 Aligned_cols=55 Identities=16% Similarity=0.087 Sum_probs=36.7
Q ss_pred HHHHHHH--hhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHH
Q 000994 444 GLQWLVN--CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNW 501 (1196)
Q Consensus 444 gl~wL~~--~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW 501 (1196)
++..++. -+..|.-.+|+-+.|.|||..++.++....... ++++++.-.....++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG---GIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCcCHH
Confidence 4444443 233444468889999999999999887776432 577888765554444
No 179
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=50.44 E-value=27 Score=41.00 Aligned_cols=23 Identities=30% Similarity=0.157 Sum_probs=18.2
Q ss_pred CeEEEeCCCCChHHHHHHHHHHH
Q 000994 457 NGILADEMGLGKTIQAMAFLAHL 479 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l 479 (1196)
+.||.-+.|.|||..+-++...+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 57999999999998876665443
No 180
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=49.98 E-value=35 Score=41.83 Aligned_cols=112 Identities=11% Similarity=0.160 Sum_probs=67.0
Q ss_pred HHHHHHHHHHh-hCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec--Cccc
Q 000994 1059 QTLDILLKRLR-AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST--RAGG 1135 (1196)
Q Consensus 1059 ~~Ld~LL~~Lk-~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST--rAGG 1135 (1196)
..+.+.|.++. ..+.++|||+..-++|+.+.++|. ...+- ....+...+|..++++|. ++--| |+++ ..-.
T Consensus 434 ~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~--~~~~v-L~~v~~gsf~ 507 (620)
T 4a15_A 434 DRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR--RDHGT-IFAVSGGRLS 507 (620)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT--TSCCE-EEEETTSCC-
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc--cCCcE-EEEEecCcee
Confidence 34444444443 346789999999999998888876 23333 333333468999999998 23334 4554 4788
Q ss_pred cccCcc--cCCEEEEeCCCC-Ccc----------------------------hHHHHHHhhhccCCCCcEEE
Q 000994 1136 LGINLT--AADTVIFYESDW-NPT----------------------------LDLQAMDRAHRLGQTKDVSS 1176 (1196)
Q Consensus 1136 lGINLT--aAdtVIfyDsdW-NPt----------------------------~d~QAmdRahRiGQtK~VtV 1176 (1196)
+|||+. ....||+.-.++ +|. .-.||+||+-|--.-+-|.|
T Consensus 508 EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 508 EGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp -------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEE
T ss_pred ccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEE
Confidence 999997 467888876554 221 02589999988766665544
No 181
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=49.77 E-value=66 Score=35.61 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=40.3
Q ss_pred HHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHH
Q 000994 445 LQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1196)
Q Consensus 445 l~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~ 506 (1196)
+..+..-+..|.-.+|+-.+|.|||.-++.++......+ .++|++..--...+....+.
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESSSCHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECCCCHHHHHHHHH
Confidence 444443344555579999999999999988887765432 58999987655555544443
No 182
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=48.38 E-value=52 Score=41.93 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=21.8
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
..+.+|.-+.|.|||..+-++...+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 346799999999999988888777654
No 183
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=48.35 E-value=29 Score=41.24 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=37.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCcc-HHHHHHHHHHhCCCC
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISRFCPDL 512 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sl-l~nW~~Ei~k~~p~l 512 (1196)
-.|.--.|.|||+.+.+++... .+|+|||||... ..+|.+++..|.|+.
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~~------~~p~lvv~~~~~~A~~l~~~l~~~~~~~ 66 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAERH------AGPVVLIAPDMQNALRLHDEISQFTDQM 66 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHHS------SSCEEEEESSHHHHHHHHHHHHHTCSSC
T ss_pred EEEeCCCchHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHhhCCCc
Confidence 4666679999999877666332 269999999655 668999999987653
No 184
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.30 E-value=53 Score=36.45 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhh-hcCC--CeEEEeCCCCChHHHHHHHHHHHH
Q 000994 441 QLKGLQWLVNCY-EQGL--NGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 441 Ql~gl~wL~~~~-~~~~--ggILADeMGLGKTlqaIall~~l~ 480 (1196)
|...+..+.+.. ..+. ..+|.-+.|.|||..+-+++..+.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 445555555544 3332 368889999999988877766553
No 185
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=47.61 E-value=39 Score=27.86 Aligned_cols=36 Identities=28% Similarity=0.215 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000994 270 VDKEMAEVRKREEREAAEALKREQELREAKRQQQRL 305 (1196)
Q Consensus 270 ~e~~~~~~~~~~eke~~~~~k~~~e~~e~~rq~rkl 305 (1196)
-|.|-.+..+.+|.+..++-.+-|++||.-||.=+=
T Consensus 13 ke~E~~eAlrq~Ee~Rk~Kh~kME~ERE~mRQ~IRd 48 (63)
T 3rk3_E 13 KFEEAQEALRQAEEERKAKYAKMEAEREAVRQGIRD 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777778888888888888899999887443
No 186
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=47.34 E-value=77 Score=34.72 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHH
Q 000994 438 KEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL 479 (1196)
Q Consensus 438 rpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l 479 (1196)
|+.+++.+.- +.. ...+|.-+.|.|||..+-.++..+
T Consensus 18 R~~el~~L~~----l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 18 REKEIEKLKG----LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CHHHHHHHHH----TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHH----hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 5666665533 333 466888899999998877766543
No 187
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=47.32 E-value=32 Score=34.97 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=24.8
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEE
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVV 492 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV 492 (1196)
.+.+|.-+.|.|||..+-++...+.... .+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~---~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN---VSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEE
Confidence 5678889999999999888777665431 355544
No 188
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=45.72 E-value=38 Score=38.41 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHH-Hhhhc-----CCCeEE--EeCCCCChHHHHHHHHHHHHH
Q 000994 438 KEYQLKGLQWLV-NCYEQ-----GLNGIL--ADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 438 rpyQl~gl~wL~-~~~~~-----~~ggIL--ADeMGLGKTlqaIall~~l~~ 481 (1196)
|+.+++.+.-++ ..... +...+| .-+.|.|||..+-.++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 556666664443 32222 223455 689999999988887766654
No 189
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=45.51 E-value=95 Score=38.73 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=22.2
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~~ 481 (1196)
.+.+.+|.-+.|.|||..+-++...+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3446799999999999998887776643
No 190
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=45.03 E-value=61 Score=36.82 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=25.2
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEe
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~ 493 (1196)
++..---|.|||..++.+...+...+ .++|+|-
T Consensus 147 av~s~KGGvGKTT~a~nLA~~La~~g---~rVlliD 179 (373)
T 3fkq_A 147 IFTSPCGGVGTSTVAAACAIAHANMG---KKVFYLN 179 (373)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHHT---CCEEEEE
T ss_pred EEECCCCCChHHHHHHHHHHHHHhCC---CCEEEEE
Confidence 34555778999999999998887652 4778775
No 191
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=44.62 E-value=64 Score=38.24 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=23.6
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCC
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~ 495 (1196)
.|.+|.-++|.|||..+=++.... + .|++.+...
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~----~--~~f~~is~~ 83 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA----N--VPFFHISGS 83 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH----T--CCEEEEEGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc----C--CCeeeCCHH
Confidence 457889999999999887665433 1 466655443
No 192
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=43.26 E-value=29 Score=42.88 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=47.1
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcc-cCCcEEEEeCCcc-HHHHHHHHHHhC
Q 000994 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKN-IWGPFLVVAPASV-LNNWADEISRFC 509 (1196)
Q Consensus 436 ~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~-~~gp~LIV~P~sl-l~nW~~Ei~k~~ 509 (1196)
.|-|.|.++|.. .+...++---.|.|||.+.+.-+.++....+ ....+|+|+...- ...-.+.+.+..
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 477899999853 2345566678999999999998888876533 2357899987544 334444555544
No 193
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=42.61 E-value=82 Score=35.78 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=65.0
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEE
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNY---RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~---rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfL 1128 (1196)
.|.|||-....-.+..+...|.++||-+.......-+.+.+.. .+++...+.|.++..+|......+... +..|++
T Consensus 44 pTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~-~~~Iiv 122 (414)
T 3oiy_A 44 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILV 122 (414)
T ss_dssp CSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT-CCSEEE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC-CCCEEE
Confidence 3789998754444344446788999999988777766666655 688999999999998888888888653 345655
Q ss_pred EecCcccc---ccCcccCCEEEE
Q 000994 1129 LSTRAGGL---GINLTAADTVIF 1148 (1196)
Q Consensus 1129 LSTrAGGl---GINLTaAdtVIf 1148 (1196)
.+....-- -+++..-+.||+
T Consensus 123 ~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 123 FSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEHHHHHHCHHHHTTCCCSEEEE
T ss_pred ECHHHHHHHHHHhccccccEEEE
Confidence 55433210 134445555555
No 194
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=42.31 E-value=18 Score=45.79 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=28.5
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWA 502 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~ 502 (1196)
..|.+|.-.+|.|||+.|-++...+. .|++.|....++..|.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~------~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKGPELLTMWF 552 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTT------CEEEECCHHHHHTTTC
T ss_pred CceEEEecCCCCCchHHHHHHHHHhC------CceEEeccchhhcccc
Confidence 34679999999999988766664431 3666665555555453
No 195
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=41.50 E-value=1.3e+02 Score=29.88 Aligned_cols=41 Identities=20% Similarity=0.097 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhC
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR 1095 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~r 1095 (1196)
..++....+|+.+....|+||+|++.-...++.|.+.|+..
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~ 62 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWAR 62 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCC
Confidence 46788889999999999999999999999999999999864
No 196
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=39.55 E-value=80 Score=37.05 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=24.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEe
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~ 493 (1196)
.+++--.|.|||-++..++.++...+ ..+++|+
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G---~kVllv~ 135 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRG---YKVGVVC 135 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 35666799999999999988887542 3556555
No 197
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=39.05 E-value=58 Score=25.76 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000994 271 DKEMAEVRKREEREAAEALKREQELREAKRQQQ 303 (1196)
Q Consensus 271 e~~~~~~~~~~eke~~~~~k~~~e~~e~~rq~r 303 (1196)
|.+-.+.++.+|.+..++-.+-|++||.-||.=
T Consensus 11 e~E~~eAlreaEe~Rk~Kh~kmE~eRE~mRq~I 43 (49)
T 1kil_E 11 EEERQEALRQAEEERKAKYAKMEAEREVMRQGI 43 (49)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888888888888999888863
No 198
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=38.59 E-value=35 Score=33.44 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=21.0
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l~ 480 (1196)
.+...+|.-+.|.|||..+-++...+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455668888999999988877776654
No 199
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=36.34 E-value=51 Score=41.13 Aligned_cols=57 Identities=19% Similarity=0.084 Sum_probs=42.6
Q ss_pred hccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcc-cCCcEEEEeCCc
Q 000994 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKN-IWGPFLVVAPAS 496 (1196)
Q Consensus 434 ~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~-~~gp~LIV~P~s 496 (1196)
-..|-|.|.++|.. .....++-.-.|.|||.+.+.-++++....+ ....+|+|+...
T Consensus 9 l~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTn 66 (724)
T 1pjr_A 9 LAHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTN 66 (724)
T ss_dssp HTTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSH
T ss_pred HhhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccH
Confidence 34789999999853 2345666678999999999998888886533 235689998854
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=35.98 E-value=1.5e+02 Score=34.54 Aligned_cols=32 Identities=25% Similarity=0.166 Sum_probs=23.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEe
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~ 493 (1196)
+++-..|.|||-.+..++.++...+ +.+++|+
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~ 132 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVA 132 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEe
Confidence 5566789999999988888876542 3555554
No 201
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=35.64 E-value=43 Score=32.08 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=38.2
Q ss_pred EEEEecchHHH-------HHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHc
Q 000994 1075 VLLFAQMTKML-------NILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQ 1119 (1196)
Q Consensus 1075 VLIFSQ~t~ml-------DlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq 1119 (1196)
|.||+..+... ..+..+|..+|+.|--+|=+...+.|..|+....
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 67887655443 5888999999999999999999999999999984
No 202
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=34.79 E-value=1.3e+02 Score=27.44 Aligned_cols=97 Identities=14% Similarity=0.022 Sum_probs=62.0
Q ss_pred HHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHcc---CCCceEEEEecCccccccCcc--
Q 000994 1067 RLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH---RSDIFVFLLSTRAGGLGINLT-- 1141 (1196)
Q Consensus 1067 ~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~---~~di~VfLLSTrAGGlGINLT-- 1141 (1196)
.+...|..|..++.....++.+. ...+..+.+|-..+..+-.+++..... .+.+.|+++|......-...-
T Consensus 22 ~~l~~~~~v~~~~~~~~a~~~l~----~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~ 97 (133)
T 3nhm_A 22 LLLSGEFDCTTAADGASGLQQAL----AHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQP 97 (133)
T ss_dssp HHHTTTSEEEEESSHHHHHHHHH----HSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSC
T ss_pred HHHhCCcEEEEECCHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhc
Confidence 33337889888877766666554 467889999977765556666766665 357888888865422212221
Q ss_pred cCCEEEEeCCCCCcchHHHHHHhhhccC
Q 000994 1142 AADTVIFYESDWNPTLDLQAMDRAHRLG 1169 (1196)
Q Consensus 1142 aAdtVIfyDsdWNPt~d~QAmdRahRiG 1169 (1196)
.|+. |+--++++..-.+++.++-+-+
T Consensus 98 g~~~--~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 98 VPDA--YLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp CCSE--EEESSCCHHHHHHHHHHHHHHH
T ss_pred CCce--EEeccCCHHHHHHHHHHHHhhh
Confidence 2444 3445788998888888875443
No 203
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=34.48 E-value=1.2e+02 Score=35.50 Aligned_cols=85 Identities=21% Similarity=0.265 Sum_probs=53.9
Q ss_pred ccccHHHHHHHHHHHHhhC-CCeEEEEec---chHHHHHHHHHHHhCCCcEEEEeCCCCHHHH-HHHHHHHccCCCceEE
Q 000994 1053 TDSGKLQTLDILLKRLRAE-NHRVLLFAQ---MTKMLNILEDYMNYRKYRYLRLDGSSTIMDR-RDMVRDFQHRSDIFVF 1127 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~-ghKVLIFSQ---~t~mlDlLee~L~~rg~~y~rLDGStk~~dR-~~~V~dFq~~~di~Vf 1127 (1196)
..+||-.....|...+... |+||++..- .....+.+..+-...|+.++.........+. .+.+..+.. .++-++
T Consensus 109 ~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~-~~~D~V 187 (433)
T 2xxa_A 109 QGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL-KFYDVL 187 (433)
T ss_dssp TTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH-TTCSEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh-CCCCEE
Confidence 5699999999999999998 999999854 3455565555555556554332222233333 455665542 245567
Q ss_pred EEecCccccccC
Q 000994 1128 LLSTRAGGLGIN 1139 (1196)
Q Consensus 1128 LLSTrAGGlGIN 1139 (1196)
|+.| +|.++++
T Consensus 188 IIDT-pG~l~~~ 198 (433)
T 2xxa_A 188 LVDT-AGRLHVD 198 (433)
T ss_dssp EEEC-CCCCTTC
T ss_pred EEEC-CCccccc
Confidence 7787 6666653
No 204
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=32.47 E-value=1.9e+02 Score=26.62 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=58.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHHHccCCCceEEEEecCcccccc-CcccCCEEE
Q 000994 1070 AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTI-MDRRDMVRDFQHRSDIFVFLLSTRAGGLGI-NLTAADTVI 1147 (1196)
Q Consensus 1070 ~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~-~dR~~~V~dFq~~~di~VfLLSTrAGGlGI-NLTaAdtVI 1147 (1196)
..|+.|..++.....+..+.. ...+..+.+|-..+. .+-.+++......+++.|+++|......-+ ....+.-.-
T Consensus 27 ~~g~~v~~~~~~~~a~~~l~~---~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~ 103 (140)
T 3h5i_A 27 KYGYTVEIALTGEAAVEKVSG---GWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYG 103 (140)
T ss_dssp HTTCEEEEESSHHHHHHHHHT---TCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEE
T ss_pred HcCCEEEEecChHHHHHHHhc---CCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcE
Confidence 458898888777666655432 256788889865532 233344444444467888888866543222 222333344
Q ss_pred EeCCCCCcchHHHHHHhhhcc
Q 000994 1148 FYESDWNPTLDLQAMDRAHRL 1168 (1196)
Q Consensus 1148 fyDsdWNPt~d~QAmdRahRi 1168 (1196)
|+.-+.++..-.+++.++.+.
T Consensus 104 ~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 104 YVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp EEETTCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 555678898888888877553
No 205
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=32.43 E-value=1.8e+02 Score=34.12 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=46.2
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEec---chHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHHHccCCCceEEE
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQ---MTKMLNILEDYMNYRKYRYLRLDGSSTI-MDRRDMVRDFQHRSDIFVFL 1128 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ---~t~mlDlLee~L~~rg~~y~rLDGStk~-~dR~~~V~dFq~~~di~VfL 1128 (1196)
..+||-..+..|...+...|+||++++- -....+.+..+-...++.+...+....+ +--.+.+..+.. .++-++|
T Consensus 109 ~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~-~~~DvVI 187 (443)
T 3dm5_A 109 QGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS-KGVDIII 187 (443)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHH-TTCSEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHh-CCCCEEE
Confidence 5699999999999999999999999873 2334445555555555554443222222 222344444433 1233555
Q ss_pred Eec
Q 000994 1129 LST 1131 (1196)
Q Consensus 1129 LST 1131 (1196)
+.|
T Consensus 188 IDT 190 (443)
T 3dm5_A 188 VDT 190 (443)
T ss_dssp EEC
T ss_pred EEC
Confidence 554
No 206
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=31.31 E-value=1.1e+02 Score=28.06 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=36.5
Q ss_pred HHHHHHhhCCCeEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q 000994 1063 ILLKRLRAENHRVLLFAQ------MTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVR 1116 (1196)
Q Consensus 1063 ~LL~~Lk~~ghKVLIFSQ------~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~ 1116 (1196)
+.+.++.+ .++|+||+. +=..-.....+|...|+.|..+|=....+.+..+..
T Consensus 9 ~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 9 DTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 44444443 679999998 456777888889999999888875555444444433
No 207
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=30.70 E-value=69 Score=35.41 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.4
Q ss_pred CCCeEEEeCCCCChHHHHHHHHHHHH
Q 000994 455 GLNGILADEMGLGKTIQAMAFLAHLA 480 (1196)
Q Consensus 455 ~~ggILADeMGLGKTlqaIall~~l~ 480 (1196)
+.+.+|.-++|+|||..+.++...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999998888776
No 208
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=29.73 E-value=37 Score=39.78 Aligned_cols=60 Identities=23% Similarity=0.237 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHhhhcC----CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHH
Q 000994 438 KEYQLKGLQWLVNCYEQG----LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNW 501 (1196)
Q Consensus 438 rpyQl~gl~wL~~~~~~~----~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW 501 (1196)
.+..++.+..++.....+ .+.+|.-.+|.|||..+-++...+... .+++.|....+...|
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~----~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 42 QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK----VPFCPMVGSEVYSTE 105 (456)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT----SCEEEEEGGGGCCSS
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC----ceEEEEeHHHHHHHh
Confidence 445555544444444333 467999999999999998887775321 467776665554333
No 209
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.63 E-value=84 Score=28.52 Aligned_cols=95 Identities=11% Similarity=-0.032 Sum_probs=59.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHcc---CCCceEEEEecCccccccCc--ccCC
Q 000994 1070 AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH---RSDIFVFLLSTRAGGLGINL--TAAD 1144 (1196)
Q Consensus 1070 ~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~---~~di~VfLLSTrAGGlGINL--TaAd 1144 (1196)
..|+.|..++.....++.+ ....+..+.+|-..+..+-.+++..... .+.+.|+++|......-... ..|+
T Consensus 25 ~~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~ 100 (127)
T 3i42_A 25 MLGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFD 100 (127)
T ss_dssp HTTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCS
T ss_pred HcCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhH
Confidence 4488888887766666555 4467889999977665555666666654 46788888886543322211 1245
Q ss_pred EEEEeCCCCCcchHHHHHHhhhccCC
Q 000994 1145 TVIFYESDWNPTLDLQAMDRAHRLGQ 1170 (1196)
Q Consensus 1145 tVIfyDsdWNPt~d~QAmdRahRiGQ 1170 (1196)
. |+.-+.++..-.+++.++++-++
T Consensus 101 ~--~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 101 F--YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp E--EEESSCCHHHHHHHHHHHC----
T ss_pred H--heeCCCCHHHHHHHHHHhhccCC
Confidence 4 44457788888888888876554
No 210
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=29.51 E-value=1.3e+02 Score=27.84 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHHhhCCCeEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q 000994 1063 ILLKRLRAENHRVLLFAQ------MTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVR 1116 (1196)
Q Consensus 1063 ~LL~~Lk~~ghKVLIFSQ------~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~ 1116 (1196)
+.+.++.. .++|+||+. +=..-.....+|...|+.|..+|=....+.|..+..
T Consensus 7 ~~v~~~i~-~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 7 LRLKKLTH-AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHHh-cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 34444433 689999995 445667778888899999988876666555544433
No 211
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=29.19 E-value=99 Score=27.10 Aligned_cols=89 Identities=11% Similarity=0.091 Sum_probs=53.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccC---CCceEEEEecCccccccCc--ccCC
Q 000994 1070 AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHR---SDIFVFLLSTRAGGLGINL--TAAD 1144 (1196)
Q Consensus 1070 ~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~---~di~VfLLSTrAGGlGINL--TaAd 1144 (1196)
..|..|..++.....++.+.. ..+..+.+|-..+..+-.+++...... +.+.|++++...... .. ..|+
T Consensus 23 ~~g~~v~~~~~~~~~~~~l~~----~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~ 96 (119)
T 2j48_A 23 AAGFKVIWLVDGSTALDQLDL----LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQAS 96 (119)
T ss_dssp HTTCEEEEESCHHHHHHHHHH----HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCS
T ss_pred hCCcEEEEecCHHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHH
Confidence 458888887766666665544 367888888766543444555555543 567777777554332 22 1244
Q ss_pred EEEEeCCCCCcchHHHHHHhhh
Q 000994 1145 TVIFYESDWNPTLDLQAMDRAH 1166 (1196)
Q Consensus 1145 tVIfyDsdWNPt~d~QAmdRah 1166 (1196)
.+ +.-+.++..-.+++.++.
T Consensus 97 ~~--l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 97 AI--LSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EE--CSSCSTTHHHHHHHHTTC
T ss_pred Hh--ccCCCCHHHHHHHHHHHh
Confidence 33 344667776677776654
No 212
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=28.55 E-value=2.2e+02 Score=24.97 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=53.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHcc-CCCceEEEEecCccccccCc--ccCCEE
Q 000994 1070 AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLLSTRAGGLGINL--TAADTV 1146 (1196)
Q Consensus 1070 ~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~-~~di~VfLLSTrAGGlGINL--TaAdtV 1146 (1196)
..|..|..++.....++.+ ....+..+.+|-.++..+-.+++..... .+.+.|+++|...... ... ..|+.+
T Consensus 23 ~~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~ 97 (116)
T 3a10_A 23 EEGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEY 97 (116)
T ss_dssp HTTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEE
T ss_pred HCCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccce
Confidence 3588887666655555544 3456888888876654334455555543 4667788887543222 222 134443
Q ss_pred EEeCCCCCcchHHHHHHhhh
Q 000994 1147 IFYESDWNPTLDLQAMDRAH 1166 (1196)
Q Consensus 1147 IfyDsdWNPt~d~QAmdRah 1166 (1196)
+ .-++++..-.+++.++.
T Consensus 98 l--~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 98 V--VKSFNFDELKEKVKKLL 115 (116)
T ss_dssp E--ECCSSTHHHHHHHHHHT
T ss_pred E--ECCCCHHHHHHHHHHHh
Confidence 3 45677877777777664
No 213
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=28.28 E-value=71 Score=37.37 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=40.5
Q ss_pred HHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 444 GLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 444 gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
++..+..-+..|.-.+|+-.+|.|||.-++.++...... ..++|++..---..++...
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~~ql~~R 243 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKENIKR 243 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCTTHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHH
Confidence 344555434455557999999999999999998887764 2588999865444444443
No 214
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=26.54 E-value=2e+02 Score=26.00 Aligned_cols=96 Identities=13% Similarity=0.036 Sum_probs=57.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhC-CCcEEEEeCCCCH-HHHHHHHHHHcc-CCCceEEEEecCccccc-cCcccCCE
Q 000994 1070 AENHRVLLFAQMTKMLNILEDYMNYR-KYRYLRLDGSSTI-MDRRDMVRDFQH-RSDIFVFLLSTRAGGLG-INLTAADT 1145 (1196)
Q Consensus 1070 ~~ghKVLIFSQ~t~mlDlLee~L~~r-g~~y~rLDGStk~-~dR~~~V~dFq~-~~di~VfLLSTrAGGlG-INLTaAdt 1145 (1196)
..|..|..++.....++.+ ... .+..+.+|-..+. .+-.+++..... .+.+.|+++|....... ...-.++
T Consensus 27 ~~g~~v~~~~~~~~a~~~l----~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~- 101 (132)
T 2rdm_A 27 DAGFLVTAVSSGAKAIEML----KSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPDS- 101 (132)
T ss_dssp HTTCEEEEESSHHHHHHHH----HTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTTC-
T ss_pred HcCCEEEEECCHHHHHHHH----HcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCCc-
Confidence 4588888776655555544 344 6888888866553 233444555443 45778888876543221 1111222
Q ss_pred EEEeCCCCCcchHHHHHHhhhccCCC
Q 000994 1146 VIFYESDWNPTLDLQAMDRAHRLGQT 1171 (1196)
Q Consensus 1146 VIfyDsdWNPt~d~QAmdRahRiGQt 1171 (1196)
-|+.-+.++..-.+++.++.+-++.
T Consensus 102 -~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 102 -IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp -EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred -ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 2455577899999999998876654
No 215
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=26.40 E-value=1.7e+02 Score=27.45 Aligned_cols=53 Identities=8% Similarity=-0.001 Sum_probs=35.4
Q ss_pred HHHHHhhCCCeEEEEecc------hHHHHHHHHHHHhCCCc---EEEEeCCCCHHHHHHHHHH
Q 000994 1064 LLKRLRAENHRVLLFAQM------TKMLNILEDYMNYRKYR---YLRLDGSSTIMDRRDMVRD 1117 (1196)
Q Consensus 1064 LL~~Lk~~ghKVLIFSQ~------t~mlDlLee~L~~rg~~---y~rLDGStk~~dR~~~V~d 1117 (1196)
.+..+.. .++|+||+.- =..-.....+|...|+. |..+|=....+-|..+...
T Consensus 8 ~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~ 69 (121)
T 3gx8_A 8 AIEDAIE-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEF 69 (121)
T ss_dssp HHHHHHH-SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHhc-cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHH
Confidence 3344433 6799999983 45667777788888988 8878766665555554443
No 216
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=25.86 E-value=1.8e+02 Score=32.22 Aligned_cols=32 Identities=28% Similarity=0.237 Sum_probs=22.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEe
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~ 493 (1196)
.+.-..|.|||-.+..+...+.... +.++++.
T Consensus 109 ~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid 140 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKMANYYAELG---YKVLIAA 140 (320)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 3445699999999888877776432 5677765
No 217
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=25.82 E-value=65 Score=42.85 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=41.8
Q ss_pred hhccCcHHHHHHHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcc---cCCcEEEEeCC
Q 000994 433 FKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKN---IWGPFLVVAPA 495 (1196)
Q Consensus 433 l~~~LrpyQl~gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~---~~gp~LIV~P~ 495 (1196)
....|-+-|.+++.. .+.+.++....|.|||.+.+.-+.++..... ....+|||++.
T Consensus 7 ~~~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft 66 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFT 66 (1232)
T ss_dssp ---CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSS
T ss_pred CCCCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEecc
Confidence 345789999999842 4557788889999999998887777765432 23579999885
No 218
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=25.67 E-value=1.9e+02 Score=31.97 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=30.7
Q ss_pred hcCCCeEEEeCCCCChHHHHHHHHHHHHHh---cccCCcEEEEeCCcc
Q 000994 453 EQGLNGILADEMGLGKTIQAMAFLAHLAEE---KNIWGPFLVVAPASV 497 (1196)
Q Consensus 453 ~~~~ggILADeMGLGKTlqaIall~~l~~~---~~~~gp~LIV~P~sl 497 (1196)
..|.-.+|+-+.|.|||..++.++...... .+..++++.|.-...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 344456899999999999998888764322 111357788876543
No 219
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=25.24 E-value=33 Score=35.58 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=17.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHH
Q 000994 458 GILADEMGLGKTIQAMAFLAHL 479 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l 479 (1196)
.++--.+|.|||..+++.+...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 3566789999999988876554
No 220
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=25.17 E-value=1.2e+02 Score=34.11 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=39.7
Q ss_pred HHHHHHHhhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 444 GLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 444 gl~wL~~~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
.|..+..-+..|.-.+||-.+|.|||.-++.++...... .++++++..---..+....
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlEms~~ql~~R 92 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLEMSAEQLALR 92 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESSSCHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCCHHHHHHH
Confidence 344444334445457999999999999999888877652 2689999875554444443
No 221
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=24.90 E-value=1.2e+02 Score=34.48 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=29.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHH
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNN 500 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~n 500 (1196)
.+|.-+.|.|||..++.++..+.... ++++.|.+.....+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~g---g~VlyId~E~s~~~ 103 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKMG---GVAAFIDAEHALDP 103 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEecccccch
Confidence 46778899999999988887766432 57888887655443
No 222
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=24.84 E-value=98 Score=28.88 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHhhCCCeEEEEec-chHHHHHHHHHHHhCCCcEEEEeCCCC
Q 000994 1056 GKLQTLDILLKRLRAENHRVLLFAQ-MTKMLNILEDYMNYRKYRYLRLDGSST 1107 (1196)
Q Consensus 1056 gKL~~Ld~LL~~Lk~~ghKVLIFSQ-~t~mlDlLee~L~~rg~~y~rLDGStk 1107 (1196)
+++..+...+..+...+.+|+|||+ --..-......|...||+...|+|+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 73 YKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp GGHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred ccHHHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3445555555555433389999995 434445677888899999899999853
No 223
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=24.53 E-value=1.1e+02 Score=42.51 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=41.5
Q ss_pred HHHHHHH--hhhcCCCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHH
Q 000994 444 GLQWLVN--CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWA 502 (1196)
Q Consensus 444 gl~wL~~--~~~~~~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~ 502 (1196)
.+.+++. -+..+.-.+|+-++|.|||.-++.++..+... .+++++|.-.....+|.
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~---g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECCCcHHHHH
Confidence 4555553 23344456899999999999999988877643 25899998877777875
No 224
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=24.51 E-value=2.5e+02 Score=33.50 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHh-hCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEEEec--Ccc
Q 000994 1058 LQTLDILLKRLR-AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST--RAG 1134 (1196)
Q Consensus 1058 L~~Ld~LL~~Lk-~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfLLST--rAG 1134 (1196)
...|.+.|.++. ..+.++|||+..-++++.+.+. .++. +...|... .+.++++.|...+. .+|+++ ..-
T Consensus 378 ~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~-v~~q~~~~--~~~~~~~~~~~~~~--~vl~~v~gg~~ 449 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLP-KYVESEDS--SVEDLYSAISANNK--VLIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSS-EEECCSSC--CHHHHHHHTTSSSS--CEEEEESSCCS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCc-EEEcCCCC--CHHHHHHHHHhcCC--eEEEEEeccee
Confidence 345555555543 4467999999988888877762 3433 33344321 25678889964333 345554 578
Q ss_pred ccccCcc-----cCCEEEEeCCCC
Q 000994 1135 GLGINLT-----AADTVIFYESDW 1153 (1196)
Q Consensus 1135 GlGINLT-----aAdtVIfyDsdW 1153 (1196)
.+|||+. .+..||+.-.++
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCC
T ss_pred cccccccccCCcceeEEEEEcCCC
Confidence 8999999 467788875444
No 225
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=23.74 E-value=2.8e+02 Score=35.12 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=23.8
Q ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEE
Q 000994 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVV 492 (1196)
Q Consensus 457 ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV 492 (1196)
+.+|.-+.|.|||..+-++...+.... ++++.|
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~---~~~i~i 622 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRI 622 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCC---CcEEEE
Confidence 458899999999998887777665321 465554
No 226
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=23.56 E-value=2.6e+02 Score=25.06 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=41.4
Q ss_pred HHHHHHhhCCCeEEEEec------chHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEE
Q 000994 1063 ILLKRLRAENHRVLLFAQ------MTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1196)
Q Consensus 1063 ~LL~~Lk~~ghKVLIFSQ------~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfL 1128 (1196)
+.+.++.. .++|+||+. +=..-..+..+|...++.|..+|=....+.+..+...+.. +.+-+++
T Consensus 8 ~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~-~~vP~v~ 77 (105)
T 2yan_A 8 ERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW-PTYPQLY 77 (105)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC-CSSCEEE
T ss_pred HHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC-CCCCeEE
Confidence 44445444 458999985 4455667777888889999888877666666666655543 3443333
No 227
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=23.46 E-value=1.9e+02 Score=38.06 Aligned_cols=95 Identities=8% Similarity=0.049 Sum_probs=63.9
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHH----HhCCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEE
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYM----NYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L----~~rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfL 1128 (1196)
+.|||-.+....+-.+...|.+|||-+..+....-..+.+ ...+++...+.|..+..++...+..... +.+.|++
T Consensus 633 TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~-g~~dIvV 711 (1151)
T 2eyq_A 633 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE-GKIDILI 711 (1151)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT-TCCSEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhc-CCCCEEE
Confidence 7799997655444445566889999998776555444443 3446888999999999999988888865 4456665
Q ss_pred EecCccccccCcccCCEEEE
Q 000994 1129 LSTRAGGLGINLTAADTVIF 1148 (1196)
Q Consensus 1129 LSTrAGGlGINLTaAdtVIf 1148 (1196)
.+.....-.+++..-+.||+
T Consensus 712 ~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp ECTHHHHSCCCCSSEEEEEE
T ss_pred ECHHHHhCCccccccceEEE
Confidence 55444444455555554444
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=23.38 E-value=2.1e+02 Score=31.25 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=22.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEe
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~ 493 (1196)
.++.-..|.|||-.+..+...+....+ ..++++.
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~ 141 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFIT 141 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence 345556899999988888777764222 2566665
No 229
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=22.94 E-value=84 Score=41.49 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=37.5
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHHHHHhC
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFC 509 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~Ei~k~~ 509 (1196)
|+| -.|.|||.+.+.-++++...+....++|+|||.....+=...+....
T Consensus 6 V~a-gAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l 55 (1166)
T 3u4q_B 6 LVG-RSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTP 55 (1166)
T ss_dssp EEE-CTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCS
T ss_pred EEe-CCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhh
Confidence 444 48999999999999998876554478999999887666555555443
No 230
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=22.79 E-value=1e+02 Score=37.74 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=47.4
Q ss_pred ccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCC
Q 000994 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGS 1105 (1196)
Q Consensus 1055 SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGS 1105 (1196)
+||-.++.+++..+...|.+|||-++-...+|-|.+.|...+.+++|+-..
T Consensus 216 TGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~~ 266 (646)
T 4b3f_X 216 TGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHP 266 (646)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECSCC
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEecch
Confidence 899999999999999999999999999999999999999999999998543
No 231
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=22.40 E-value=1.6e+02 Score=27.57 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=33.4
Q ss_pred CCeEEEEec------chHHHHHHHHHHHhCCCc-EEEEeCCCCHHHHHHHHH
Q 000994 1072 NHRVLLFAQ------MTKMLNILEDYMNYRKYR-YLRLDGSSTIMDRRDMVR 1116 (1196)
Q Consensus 1072 ghKVLIFSQ------~t~mlDlLee~L~~rg~~-y~rLDGStk~~dR~~~V~ 1116 (1196)
.++|+||+. +=..-.....+|...|+. |..+|=....+.|..+..
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~ 70 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 70 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHH
Confidence 469999998 456777888889999995 888876666555555443
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=22.24 E-value=59 Score=41.11 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=27.3
Q ss_pred CCeEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHHHHHHH
Q 000994 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1196)
Q Consensus 456 ~ggILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~nW~~E 504 (1196)
.|.+|.-.+|.|||..+=++...+ ..+++.|-...++..|..+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~el------g~~~~~v~~~~l~sk~~ge 281 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTT------TCEEEEEEHHHHHSSCTTH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh------CCeEEEEEhHHhhcccchH
Confidence 356889999999998886655332 1356656555554444333
No 233
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=22.12 E-value=2.3e+02 Score=32.02 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=65.2
Q ss_pred ccccHHHHHHHHHHHHh-hCCCeEEEEecchHHHHHHHHHH-HhCCC---cEEEEeCCCCHHHHHHHHHHHccCCCceEE
Q 000994 1053 TDSGKLQTLDILLKRLR-AENHRVLLFAQMTKMLNILEDYM-NYRKY---RYLRLDGSSTIMDRRDMVRDFQHRSDIFVF 1127 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk-~~ghKVLIFSQ~t~mlDlLee~L-~~rg~---~y~rLDGStk~~dR~~~V~dFq~~~di~Vf 1127 (1196)
+.+||-.....++..+. ..+.+|||.+.....++-..+.+ ...+. ++..+.|.....++...... ..|+
T Consensus 32 tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~------~~iv 105 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR------AKVI 105 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH------CSEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC------CCEE
Confidence 67999987666655543 46889999999876666444444 34355 89999999998776655432 3455
Q ss_pred EEecCcccc-----ccCcccCCEEEEeCCCC--CcchHHHHHHhhhc
Q 000994 1128 LLSTRAGGL-----GINLTAADTVIFYESDW--NPTLDLQAMDRAHR 1167 (1196)
Q Consensus 1128 LLSTrAGGl-----GINLTaAdtVIfyDsdW--NPt~d~QAmdRahR 1167 (1196)
+.+...... .+++..-+.||+=+-+- |.....+.+.+..+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~ 152 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKR 152 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred EecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHh
Confidence 555433211 34566666666633331 22233444444443
No 234
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=21.84 E-value=2.1e+02 Score=37.56 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=68.0
Q ss_pred cccccHHHHHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHccCCCceEEE
Q 000994 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNY---RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1196)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~---rg~~y~rLDGStk~~dR~~~V~dFq~~~di~VfL 1128 (1196)
.|.|||-.+..-.+..+...|-++||-+.......-+.+.|.. .+++...+.|.++..+|......+.. +++.|++
T Consensus 101 pTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~-g~~~IlV 179 (1104)
T 4ddu_A 101 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE-DDYHILV 179 (1104)
T ss_dssp STTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT-SCCSEEE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC-CCCCEEE
Confidence 3789999866555555556788999999988887777777766 67899999999998888888888876 3355655
Q ss_pred EecCcccc---ccCcccCCEEEEe
Q 000994 1129 LSTRAGGL---GINLTAADTVIFY 1149 (1196)
Q Consensus 1129 LSTrAGGl---GINLTaAdtVIfy 1149 (1196)
.+....-- -+++..-+.||+=
T Consensus 180 ~Tp~rL~~~l~~l~~~~l~~lViD 203 (1104)
T 4ddu_A 180 FSTQFVSKNREKLSQKRFDFVFVD 203 (1104)
T ss_dssp EEHHHHHHSHHHHHTSCCSEEEES
T ss_pred ECHHHHHHHHHhhcccCcCEEEEe
Confidence 55432200 1344556666653
No 235
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=21.63 E-value=88 Score=32.07 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=25.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000994 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1196)
Q Consensus 459 ILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P 494 (1196)
|..-..|.|||..++.++..+...+ .++|++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G---~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG---YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT---CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcc
Confidence 5555789999999999999987653 36787766
No 236
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=21.50 E-value=4.5e+02 Score=23.78 Aligned_cols=102 Identities=11% Similarity=0.084 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHcc---CCCceEEEEecCcccc
Q 000994 1060 TLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH---RSDIFVFLLSTRAGGL 1136 (1196)
Q Consensus 1060 ~Ld~LL~~Lk~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~---~~di~VfLLSTrAGGl 1136 (1196)
.|..+|.. .|..|..++.....++.+ ....+..+.+|-..+..+-.+++..... .+.+.|+++|......
T Consensus 22 ~l~~~L~~---~g~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~ 94 (142)
T 3cg4_A 22 AVKTILSD---AGFHIISADSGGQCIDLL----KKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPD 94 (142)
T ss_dssp HHHHHHHH---TTCEEEEESSHHHHHHHH----HTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCC
T ss_pred HHHHHHHH---CCeEEEEeCCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHH
Confidence 34444443 488887777665555544 4456888888876654344455555543 4678888888654322
Q ss_pred c-cCcccCCEEEEeCCCCCcchHHHHHHhhhcc
Q 000994 1137 G-INLTAADTVIFYESDWNPTLDLQAMDRAHRL 1168 (1196)
Q Consensus 1137 G-INLTaAdtVIfyDsdWNPt~d~QAmdRahRi 1168 (1196)
- ...-.+.-.-++.-+.++..-.+++.++.+.
T Consensus 95 ~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 95 AKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp CSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 2222222233445577888888888877554
No 237
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.18 E-value=2.7e+02 Score=25.39 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=60.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHcc---CCCceEEEEecCcccccc--Ccc--c
Q 000994 1070 AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH---RSDIFVFLLSTRAGGLGI--NLT--A 1142 (1196)
Q Consensus 1070 ~~ghKVLIFSQ~t~mlDlLee~L~~rg~~y~rLDGStk~~dR~~~V~dFq~---~~di~VfLLSTrAGGlGI--NLT--a 1142 (1196)
..|+.|..++.....++.+ ....+..+.+|-..+..+-.+++..... .+++.|+++|......-+ ... .
T Consensus 28 ~~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g 103 (140)
T 3grc_A 28 KGGFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLA 103 (140)
T ss_dssp HTTCEEEEECSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTC
T ss_pred HCCCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcC
Confidence 4588888877766666555 4467889999977765556667777664 467888888865422111 222 3
Q ss_pred CCEEEEeCCCCCcchHHHHHHhhhccC
Q 000994 1143 ADTVIFYESDWNPTLDLQAMDRAHRLG 1169 (1196)
Q Consensus 1143 AdtVIfyDsdWNPt~d~QAmdRahRiG 1169 (1196)
|+.+ +.-+.++..-.+++.++.+-+
T Consensus 104 ~~~~--l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 104 VSTW--LEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp CCEE--ECSSCCHHHHHHHHHHHHHHH
T ss_pred CCEE--EeCCCCHHHHHHHHHHHHHhc
Confidence 4433 445678888888888876543
No 238
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=21.11 E-value=3.7e+02 Score=31.88 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=25.1
Q ss_pred ccccHHHHHHHHHHHHhhCCCeEEEEec
Q 000994 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQ 1080 (1196)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ 1080 (1196)
..+||-..+..|+..+...|+||+|.+-
T Consensus 110 ~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 110 QGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4599999999999999988999999875
No 239
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=20.78 E-value=53 Score=36.24 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.1
Q ss_pred cCCCeEEEeCCCCChHHHHHHHHHHH
Q 000994 454 QGLNGILADEMGLGKTIQAMAFLAHL 479 (1196)
Q Consensus 454 ~~~ggILADeMGLGKTlqaIall~~l 479 (1196)
.+.+.+|.-++|+|||..+-++...+
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 46688999999999998887765544
No 240
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=20.72 E-value=2.3e+02 Score=31.82 Aligned_cols=41 Identities=12% Similarity=-0.054 Sum_probs=30.0
Q ss_pred eEEEeCCCCChHHHHHHHHHHHHHhcccCCcEEEEeCCccHH
Q 000994 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN 499 (1196)
Q Consensus 458 gILADeMGLGKTlqaIall~~l~~~~~~~gp~LIV~P~sll~ 499 (1196)
..++-+.|.|||..++.+++...... ..+.++.|.....+.
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhh
Confidence 47889999999999999888776532 125778887755443
Done!