Your job contains 1 sequence.
>000996
MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR
NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP
PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGT
GDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV
DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWH
DLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASI
IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDH
SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK
ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
PAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKN
SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000996
(1195 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2119013 - symbol:NRPB2 species:3702 "Arabidops... 5676 0. 1
DICTYBASE|DDB_G0288257 - symbol:rpb2 "RNA polymerase II c... 4179 0. 1
UNIPROTKB|A5PJW8 - symbol:POLR2B "DNA-directed RNA polyme... 3996 0. 1
UNIPROTKB|E2RNN5 - symbol:POLR2B "DNA-directed RNA polyme... 3996 0. 1
UNIPROTKB|I3LGP4 - symbol:POLR2B "DNA-directed RNA polyme... 3996 0. 1
UNIPROTKB|C9J2Y9 - symbol:POLR2B "DNA-directed RNA polyme... 3990 0. 1
UNIPROTKB|P30876 - symbol:POLR2B "DNA-directed RNA polyme... 3990 0. 1
RGD|1309477 - symbol:Polr2b "polymerase (RNA) II (DNA dir... 3990 0. 1
MGI|MGI:2388280 - symbol:Polr2b "polymerase (RNA) II (DNA... 3986 0. 1
UNIPROTKB|F1NCB0 - symbol:POLR2B "DNA-directed RNA polyme... 3979 0. 1
UNIPROTKB|F1P4F2 - symbol:POLR2B "DNA-directed RNA polyme... 3970 0. 1
FB|FBgn0262955 - symbol:RpII140 "RNA polymerase II 140kD ... 3904 0. 1
UNIPROTKB|C9J4M6 - symbol:POLR2B "DNA-directed RNA polyme... 3835 0. 1
WB|WBGene00016140 - symbol:rpb-2 species:6239 "Caenorhabd... 3788 0. 1
ZFIN|ZDB-GENE-041008-1 - symbol:polr2b "polymerase (RNA) ... 3714 0. 1
GENEDB_PFALCIPARUM|PFB0715w - symbol:PFB0715w "DNA-direct... 2277 0. 2
UNIPROTKB|O96236 - symbol:PFB0715w "DNA-directed RNA poly... 2277 0. 2
POMBASE|SPAC23G3.01 - symbol:rpb2 "RNA polymerase II comp... 1989 0. 2
SGD|S000005677 - symbol:RPB2 "RNA polymerase II second la... 1930 0. 2
CGD|CAL0004145 - symbol:orf19.3349 species:5476 "Candida ... 1898 0. 2
UNIPROTKB|Q5A8Y5 - symbol:RPB140 "DNA-directed RNA polyme... 1898 0. 2
ASPGD|ASPL0000039770 - symbol:AN9120 species:162425 "Emer... 1858 0. 3
POMBASE|SPAC4G9.08c - symbol:rpc2 "DNA-directed RNA polym... 1758 5.2e-210 2
WB|WBGene00017300 - symbol:rpc-2 species:6239 "Caenorhabd... 1746 7.2e-191 2
ZFIN|ZDB-GENE-030131-2887 - symbol:polr3b "polymerase (RN... 1589 2.5e-188 2
CGD|CAL0002357 - symbol:orf19.5847 species:5476 "Candida ... 1703 2.0e-186 2
FB|FBgn0004463 - symbol:RpIII128 "RNA polymerase III 128k... 1610 1.1e-185 2
TAIR|locus:2153323 - symbol:NRPC2 "nuclear RNA polymerase... 1709 3.7e-183 2
UNIPROTKB|E1BRJ4 - symbol:POLR3B "DNA-directed RNA polyme... 1620 3.9e-179 2
UNIPROTKB|Q9NW08 - symbol:POLR3B "DNA-directed RNA polyme... 1616 1.3e-178 2
UNIPROTKB|E1BPX6 - symbol:POLR3B "Uncharacterized protein... 1616 1.3e-178 2
UNIPROTKB|E2RHZ2 - symbol:POLR3B "DNA-directed RNA polyme... 1616 1.3e-178 2
MGI|MGI:1917678 - symbol:Polr3b "polymerase (RNA) III (DN... 1613 2.7e-178 2
RGD|1565311 - symbol:Polr3b "polymerase (RNA) III (DNA di... 1613 2.7e-178 2
SGD|S000005733 - symbol:RET1 "Second-largest subunit of R... 1615 1.2e-175 2
DICTYBASE|DDB_G0288449 - symbol:rpc2 "RNA polymerase III,... 1167 1.3e-171 2
TAIR|locus:2095233 - symbol:NRPD2A "nuclear RNA polymeras... 996 5.6e-167 2
ASPGD|ASPL0000054387 - symbol:AN0321 species:162425 "Emer... 1539 6.1e-158 1
GENEDB_PFALCIPARUM|PFL0330c - symbol:PFL0330c "DNA-direct... 750 1.2e-152 3
UNIPROTKB|Q8I5X9 - symbol:PFL0330c "DNA-directed RNA poly... 750 1.2e-152 3
UNIPROTKB|F1SPQ0 - symbol:LOC100737037 "DNA-directed RNA ... 1044 3.7e-118 2
DICTYBASE|DDB_G0293560 - symbol:rpa2 "RNA polymerase I, s... 799 2.9e-111 2
CGD|CAL0002109 - symbol:RPA135 species:5476 "Candida albi... 780 7.9e-107 3
UNIPROTKB|F1NLV9 - symbol:F1NLV9 "DNA-directed RNA polyme... 830 4.0e-106 2
POMBASE|SPBP23A10.07 - symbol:rpa2 "DNA-directed RNA poly... 802 2.2e-103 2
SGD|S000006214 - symbol:RPA135 "RNA polymerase I second l... 775 6.4e-103 3
UNIPROTKB|E2REX8 - symbol:POLR1B "DNA-directed RNA polyme... 820 6.8e-103 2
ASPGD|ASPL0000012082 - symbol:AN3933 species:162425 "Emer... 764 5.5e-102 3
WB|WBGene00008781 - symbol:rpoa-2 species:6239 "Caenorhab... 766 2.9e-101 3
UNIPROTKB|Q9H9Y6 - symbol:POLR1B "DNA-directed RNA polyme... 815 6.5e-101 2
RGD|620822 - symbol:Polr1b "polymerase (RNA) I polypeptid... 797 1.5e-100 3
UNIPROTKB|O54888 - symbol:Polr1b "DNA-directed RNA polyme... 797 1.5e-100 3
UNIPROTKB|F1SUA2 - symbol:POLR1B "DNA-directed RNA polyme... 804 1.6e-100 2
UNIPROTKB|F5GZX4 - symbol:POLR1B "DNA-directed RNA polyme... 815 3.3e-100 2
UNIPROTKB|A6QLS0 - symbol:POLR1B "DNA-directed RNA polyme... 799 2.4e-99 2
MGI|MGI:108014 - symbol:Polr1b "polymerase (RNA) I polype... 802 1.2e-98 2
ZFIN|ZDB-GENE-040426-1598 - symbol:polr1b "polymerase (RN... 790 1.2e-96 3
UNIPROTKB|F5H643 - symbol:POLR1B "DNA-directed RNA polyme... 815 2.6e-95 2
UNIPROTKB|F8W898 - symbol:POLR1B "DNA-directed RNA polyme... 815 2.6e-93 2
UNIPROTKB|I3LGN1 - symbol:LOC100737037 "DNA-directed RNA ... 907 5.7e-91 1
FB|FBgn0003278 - symbol:RpI135 "RNA polymerase I 135kD su... 746 6.8e-91 2
GENEDB_PFALCIPARUM|PF11_0358 - symbol:PF11_0358 "DNA-dire... 520 1.5e-87 5
UNIPROTKB|Q8II17 - symbol:PF11_0358 "DNA-directed RNA pol... 520 1.5e-87 5
TAIR|locus:2019272 - symbol:NRPA2 "nuclear RNA polymerase... 738 2.3e-86 4
UNIPROTKB|F8VRE2 - symbol:POLR3B "DNA-directed RNA polyme... 698 7.8e-71 2
TIGR_CMR|CHY_2318 - symbol:CHY_2318 "DNA-directed RNA pol... 486 3.8e-59 3
TIGR_CMR|BA_0102 - symbol:BA_0102 "DNA-directed RNA polym... 451 7.0e-55 5
TIGR_CMR|DET_0603 - symbol:DET_0603 "DNA-directed RNA pol... 280 2.8e-48 6
TIGR_CMR|CBU_0231 - symbol:CBU_0231 "DNA-directed RNA pol... 198 7.0e-46 7
TIGR_CMR|CJE_0528 - symbol:CJE_0528 "DNA-directed RNA pol... 222 9.6e-46 6
TIGR_CMR|ECH_0952 - symbol:ECH_0952 "DNA-directed RNA pol... 195 7.9e-45 7
UNIPROTKB|P0A680 - symbol:rpoB "DNA-directed RNA polymera... 256 1.7e-44 5
UNIPROTKB|P60281 - symbol:rpoB "DNA-directed RNA polymera... 249 1.9e-43 6
UNIPROTKB|F1NRJ5 - symbol:F1NRJ5 "Uncharacterized protein... 307 2.6e-43 2
TIGR_CMR|APH_1024 - symbol:APH_1024 "DNA-directed RNA pol... 197 1.3e-42 7
TIGR_CMR|SPO_3508 - symbol:SPO_3508 "DNA-directed RNA pol... 219 1.5e-42 6
TIGR_CMR|GSU_2863 - symbol:GSU_2863 "DNA-directed RNA pol... 198 3.1e-42 6
UNIPROTKB|P0A8V2 - symbol:rpoB "RNA polymerase, beta subu... 192 1.1e-41 7
UNIPROTKB|Q9KV30 - symbol:rpoB "DNA-directed RNA polymera... 189 1.5e-41 7
TIGR_CMR|VC_0328 - symbol:VC_0328 "DNA-directed RNA polym... 189 1.5e-41 7
TIGR_CMR|SO_0224 - symbol:SO_0224 "DNA-directed RNA polym... 191 2.5e-41 6
TIGR_CMR|NSE_0678 - symbol:NSE_0678 "DNA-directed RNA pol... 199 1.6e-40 6
TIGR_CMR|CPS_4769 - symbol:CPS_4769 "DNA-directed RNA pol... 181 3.8e-40 6
UNIPROTKB|I3L6M3 - symbol:LOC100737037 "Uncharacterized p... 388 1.0e-34 1
UNIPROTKB|P0C501 - symbol:rpoB "DNA-directed RNA polymera... 301 9.8e-30 4
UNIPROTKB|P0C502 - symbol:rpoB "DNA-directed RNA polymera... 301 9.8e-30 4
UNIPROTKB|P0C503 - symbol:rpoB "DNA-directed RNA polymera... 301 9.8e-30 4
UNIPROTKB|Q6ENI4 - symbol:rpoB "DNA-directed RNA polymera... 301 9.8e-30 4
UNIPROTKB|H7C0D9 - symbol:POLR1B "DNA-directed RNA polyme... 283 1.7e-23 1
UNIPROTKB|P21421 - symbol:rpoB "DNA-directed RNA polymera... 251 1.0e-16 3
UNIPROTKB|F8VRU2 - symbol:POLR3B "DNA-directed RNA polyme... 188 2.4e-13 1
UNIPROTKB|C9JZW8 - symbol:POLR2B "DNA-directed RNA polyme... 171 1.5e-11 1
UNIPROTKB|I3LR52 - symbol:I3LR52 "Uncharacterized protein... 151 2.1e-09 1
UNIPROTKB|C9JMN3 - symbol:POLR2B "DNA-directed RNA polyme... 141 2.4e-08 1
UNIPROTKB|F8VRS3 - symbol:POLR3B "DNA-directed RNA polyme... 115 1.4e-05 1
>TAIR|locus:2119013 [details] [associations]
symbol:NRPB2 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0009506
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006351 EMBL:AL161555 EMBL:AL035527 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 EMBL:Z19120 EMBL:Z19121 IPI:IPI00524372
PIR:T05846 RefSeq:NP_193902.1 UniGene:At.112
ProteinModelPortal:P38420 STRING:P38420 PaxDb:P38420 PRIDE:P38420
EnsemblPlants:AT4G21710.1 GeneID:828259 KEGG:ath:AT4G21710
TAIR:At4g21710 HOGENOM:HOG000218612 InParanoid:P38420 KO:K03010
OMA:IMIVFRA PhylomeDB:P38420 ProtClustDB:CLSN2685591
Genevestigator:P38420 GermOnline:AT4G21710 Uniprot:P38420
Length = 1188
Score = 5676 (2003.1 bits), Expect = 0., P = 0.
Identities = 1083/1161 (93%), Positives = 1110/1161 (95%)
Query: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDFAETI
Sbjct: 26 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 85
Query: 88 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT
Sbjct: 86 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 145
Query: 148 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
ETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 146 ETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 205
Query: 208 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 267
MSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPPSTMFVRML+R SAKGGSSGQYIR TL
Sbjct: 206 MSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTL 265
Query: 268 PYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDY 327
PYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQ VALDY
Sbjct: 266 PYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQLVALDY 325
Query: 328 IGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRR 387
IGKRGATVGVT++KRIKYA++ILQKEMLPHVG G+ CETKKAYYFGYIIHRLLLCALGRR
Sbjct: 326 IGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRR 385
Query: 388 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 447
EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGK+VNLQFAIKAKTI
Sbjct: 386 PEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTI 445
Query: 448 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507
TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 446 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 505
Query: 508 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567
HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP+VI
Sbjct: 506 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPSVI 565
Query: 568 PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCS 627
PQATKIFVNG WVG+HRDP+MLVKT VDVNTEVGVVRDIRLKELRIYTDYGRCS
Sbjct: 566 PQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 625
Query: 628 RPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXND 687
RPLFIV+ Q+LLIKKRDI ALQQRES E+ GWH LVAKGF +D
Sbjct: 626 RPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISD 685
Query: 688 LVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 747
LVQARL PEEAY + YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 686 LVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 745
Query: 748 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 807
TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMN
Sbjct: 746 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMN 805
Query: 808 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 867
QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +TMGMRHGSYDKLDDDGLAPPG
Sbjct: 806 QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPG 865
Query: 868 TRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 927
TRVSGEDVIIGKTTPISQDEAQGQ+SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV
Sbjct: 866 TRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 925
Query: 928 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG+TPDIIVNPHAIPSRMTIG
Sbjct: 926 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIG 985
Query: 988 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1047
QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR LTAM
Sbjct: 986 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAM 1045
Query: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 1107
IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+
Sbjct: 1046 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1105
Query: 1108 HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1167
HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQ
Sbjct: 1106 HFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ 1165
Query: 1168 ELMAMAIAPRMLTKEDTKQSK 1188
ELM+MAIAPRMLTK K +K
Sbjct: 1166 ELMSMAIAPRMLTKH-LKSAK 1185
>DICTYBASE|DDB_G0288257 [details] [associations]
symbol:rpb2 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 dictyBase:DDB_G0288257 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR GO:GO:0006366
EMBL:AAFI02000109 GO:GO:0003899 GO:GO:0005665 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA RefSeq:XP_636812.1 STRING:Q54J75 PRIDE:Q54J75
EnsemblProtists:DDB0216277 GeneID:8626529 KEGG:ddi:DDB_G0288257
ProtClustDB:CLSZ2429137 Uniprot:Q54J75
Length = 1170
Score = 4179 (1476.1 bits), Expect = 0., P = 0.
Identities = 792/1159 (68%), Positives = 945/1159 (81%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ--SDFAET 86
W VISAYF+EKGLVRQQLDSFDEFIQNTMQEI+DES I +RPESQH+PGQ S+ T
Sbjct: 24 WTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQAVVSNNVST 83
Query: 87 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD-GEE 145
+ + FGQIYLSKP E DG + + P AR+RNLTYSAPL+VD+TK V+ G+E
Sbjct: 84 -FSVKFGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGSKSKGDE 141
Query: 146 VTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ 205
+ ++FIGKVPIMLRS YC L + ++DLT +GEC +DQGGYFIINGSEKVLIAQ
Sbjct: 142 RRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIINGSEKVLIAQ 201
Query: 206 EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 265
EKM+ NHVYVFKK P+KY+YVAE+RS E+ +RP STM+++ML T+ G G I+A
Sbjct: 202 EKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNTNK--GPVG--IKA 257
Query: 266 TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
T+PYI+ ++P+IIVFRALGFVADKDILEHICYDF+D QMM+L+RPSLEE+FVIQ+Q+VAL
Sbjct: 258 TVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEESFVIQSQEVAL 317
Query: 326 DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 385
DY+GKRG+T+G TR++RIK+A+E+LQKEMLPHV +F ETKKA+YFGYI HRLLL +L
Sbjct: 318 DYLGKRGSTMG-TREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYITHRLLLASLE 376
Query: 386 RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
RR DDRDH+ NKRLDLAGPLLG LFR LF+KLT+DVR Y+Q+C+D K+ A+K+K
Sbjct: 377 RRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDKDKEFIASSAVKSK 436
Query: 446 TITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
TITSGLKYSLATGNWG + + GT++GV+QVLNRLT+ASTLSHLRRLN+PIGREGKLAKPR
Sbjct: 437 TITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLNTPIGREGKLAKPR 496
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP- 564
QLHN+ WG++CP+ETPEGQACGLVKNLA+M YI+VGSA+ PILEFLEEW TEN EEIS
Sbjct: 497 QLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWTTENLEEISDL 556
Query: 565 AVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYG 624
+ I ATKIFVNG WVGIH P+ L+ T DV+ EV VVRDIR KELR+YTD G
Sbjct: 557 SSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVRDIREKELRLYTDPG 616
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 684
RC RPLF+V+ ++ IKK+ I L + + W DL+++G
Sbjct: 617 RCCRPLFVVQDNKVQIKKQHINKLINNDEYK---WQDLLSEGIVEYIDAEEEETVLIAMT 673
Query: 685 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
DLV P E TYTHCEIHPS+ILG+C SIIPFPDHNQSPRNTYQ+AMGKQAMG
Sbjct: 674 PEDLVPM---PNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQAAMGKQAMG 730
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
+Y+TNYQ RMDT+A+VL+YPQKPLVTTR+ME+LHFR+LPAG N VAIACYSGYNQEDSV
Sbjct: 731 VYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNVCVAIACYSGYNQEDSV 790
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
I+NQS+IDRG FRS+F+R+Y+DE+KK +L++E F +P+R GMRHGSY+K+DDDGL
Sbjct: 791 ILNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLV 850
Query: 865 PPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
PG RV+G+D+IIGKTTP+ S D+ + R+T+RD S +LR SETG+VDQV+LTT+ +
Sbjct: 851 APGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRHTKRDSSTALRSSETGIVDQVILTTSGE 910
Query: 923 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
G +F KVRVRS+R+PQIGDKFSSRHGQKGT GM Y QED+P+TVEGI PDIIVNPHAIPS
Sbjct: 911 GFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPS 970
Query: 983 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
RMTIGQLIEC++GKV+A G EGDATPFTDVTV+ IS+ALHK GYQM G E MYNGHTGR
Sbjct: 971 RMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEAISQALHKIGYQMTGHEVMYNGHTGR 1030
Query: 1043 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102
R+ A IF+GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1031 RMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMI 1090
Query: 1103 AHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1162
+HGA+ FLKERLFDQSD+YRVH+C+ CGLIAIANLKKNSFECR CKNKT I Q+ +PYA
Sbjct: 1091 SHGAAQFLKERLFDQSDSYRVHICDICGLIAIANLKKNSFECRRCKNKTQISQIRMPYAA 1150
Query: 1163 KLLFQELMAMAIAPRMLTK 1181
KLLFQELM+M+IAPRM T+
Sbjct: 1151 KLLFQELMSMSIAPRMFTQ 1169
>UNIPROTKB|A5PJW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:DAAA02017743
EMBL:BC142267 IPI:IPI00701366 RefSeq:NP_001092552.1
UniGene:Bt.103151 STRING:A5PJW8 Ensembl:ENSBTAT00000025800
GeneID:538184 KEGG:bta:538184 InParanoid:A5PJW8 NextBio:20877300
Uniprot:A5PJW8
Length = 1174
Score = 3996 (1411.7 bits), Expect = 0., P = 0.
Identities = 773/1159 (66%), Positives = 915/1159 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ + Y
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPR--Y 84
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +
Sbjct: 85 LLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQ 141
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
TQ K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM
Sbjct: 142 TQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRAT 266
+TN VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I AT
Sbjct: 201 ATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVAT 259
Query: 267 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
LPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL+
Sbjct: 260 LPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALN 319
Query: 327 YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
+IG RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGR
Sbjct: 320 FIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGR 379
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
R DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK +
Sbjct: 380 RELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRI 439
Query: 447 ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPR
Sbjct: 440 ISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPR 499
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
QLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA
Sbjct: 500 QLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPA 559
Query: 566 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYG 624
I ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD G
Sbjct: 560 AIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 619
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 684
R RPL IVEKQ+LL+KKR I L++RE + W DLVA G
Sbjct: 620 RICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMT 678
Query: 685 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
+DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 679 PDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 734
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSV
Sbjct: 735 VYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSV 794
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
IMN+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL
Sbjct: 795 IMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLI 854
Query: 865 PPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
PG RVSG+DVIIGKT P ++DE +G RYT+RD S LR SETG+VDQV++T N +
Sbjct: 855 APGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQE 914
Query: 923 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPS
Sbjct: 915 GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPS 974
Query: 983 RMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTG 1041
RMTIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TG
Sbjct: 975 RMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTG 1034
Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
R++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC
Sbjct: 1035 RKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQ 1094
Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYA
Sbjct: 1095 IAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYA 1154
Query: 1162 CKLLFQELMAMAIAPRMLT 1180
CKLLFQELM+M+IAPRM++
Sbjct: 1155 CKLLFQELMSMSIAPRMMS 1173
>UNIPROTKB|E2RNN5 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:AAEX03009093 RefSeq:XP_532382.2 ProteinModelPortal:E2RNN5
Ensembl:ENSCAFT00000003641 GeneID:475152 KEGG:cfa:475152
Uniprot:E2RNN5
Length = 1174
Score = 3996 (1411.7 bits), Expect = 0., P = 0.
Identities = 773/1159 (66%), Positives = 915/1159 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ + Y
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPR--Y 84
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +
Sbjct: 85 LLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQ 141
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
TQ K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM
Sbjct: 142 TQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRAT 266
+TN VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I AT
Sbjct: 201 ATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVAT 259
Query: 267 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
LPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL+
Sbjct: 260 LPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALN 319
Query: 327 YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
+IG RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGR
Sbjct: 320 FIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGR 379
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
R DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK +
Sbjct: 380 RELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRI 439
Query: 447 ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPR
Sbjct: 440 ISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPR 499
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
QLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA
Sbjct: 500 QLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPA 559
Query: 566 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYG 624
I ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD G
Sbjct: 560 AIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 619
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 684
R RPL IVEKQ+LL+KKR I L++RE + W DLVA G
Sbjct: 620 RICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMT 678
Query: 685 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
+DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 679 PDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 734
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSV
Sbjct: 735 VYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSV 794
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
IMN+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL
Sbjct: 795 IMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLI 854
Query: 865 PPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
PG RVSG+DVIIGKT P ++DE +G RYT+RD S LR SETG+VDQV++T N +
Sbjct: 855 APGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQE 914
Query: 923 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPS
Sbjct: 915 GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPS 974
Query: 983 RMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTG 1041
RMTIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TG
Sbjct: 975 RMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTG 1034
Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
R++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC
Sbjct: 1035 RKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQ 1094
Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYA
Sbjct: 1095 IAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYA 1154
Query: 1162 CKLLFQELMAMAIAPRMLT 1180
CKLLFQELM+M+IAPRM++
Sbjct: 1155 CKLLFQELMSMSIAPRMMS 1173
>UNIPROTKB|I3LGP4 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:FP476021 EMBL:CU984592 RefSeq:XP_003129085.2 UniGene:Ssc.55326
Ensembl:ENSSSCT00000023257 GeneID:397001 KEGG:ssc:397001
Uniprot:I3LGP4
Length = 1167
Score = 3996 (1411.7 bits), Expect = 0., P = 0.
Identities = 773/1159 (66%), Positives = 915/1159 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ + Y
Sbjct: 20 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPR--Y 77
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +
Sbjct: 78 LLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQ 134
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
TQ K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM
Sbjct: 135 TQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 193
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRAT 266
+TN VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I AT
Sbjct: 194 ATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVAT 252
Query: 267 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
LPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL+
Sbjct: 253 LPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALN 312
Query: 327 YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
+IG RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGR
Sbjct: 313 FIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGR 372
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
R DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK +
Sbjct: 373 RELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRI 432
Query: 447 ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPR
Sbjct: 433 ISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPR 492
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
QLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA
Sbjct: 493 QLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPA 552
Query: 566 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYG 624
I ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD G
Sbjct: 553 AIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 612
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 684
R RPL IVEKQ+LL+KKR I L++RE + W DLVA G
Sbjct: 613 RICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMT 671
Query: 685 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
+DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 672 PDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 727
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSV
Sbjct: 728 VYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSV 787
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
IMN+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL
Sbjct: 788 IMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLI 847
Query: 865 PPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
PG RVSG+DVIIGKT P ++DE +G RYT+RD S LR SETG+VDQV++T N +
Sbjct: 848 APGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQE 907
Query: 923 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPS
Sbjct: 908 GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPS 967
Query: 983 RMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTG 1041
RMTIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TG
Sbjct: 968 RMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTG 1027
Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
R++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC
Sbjct: 1028 RKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQ 1087
Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYA
Sbjct: 1088 IAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYA 1147
Query: 1162 CKLLFQELMAMAIAPRMLT 1180
CKLLFQELM+M+IAPRM++
Sbjct: 1148 CKLLFQELMSMSIAPRMMS 1166
>UNIPROTKB|C9J2Y9 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HGNC:HGNC:9188 IPI:IPI00894141 ProteinModelPortal:C9J2Y9
STRING:C9J2Y9 Ensembl:ENST00000441246 ArrayExpress:C9J2Y9
Bgee:C9J2Y9 Uniprot:C9J2Y9
Length = 1167
Score = 3990 (1409.6 bits), Expect = 0., P = 0.
Identities = 772/1159 (66%), Positives = 914/1159 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ + Y
Sbjct: 20 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPR--Y 77
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +
Sbjct: 78 LLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQ 134
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
TQ K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM
Sbjct: 135 TQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 193
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRAT 266
+TN VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I AT
Sbjct: 194 ATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVAT 252
Query: 267 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
LPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL+
Sbjct: 253 LPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALN 312
Query: 327 YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
+IG RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGR
Sbjct: 313 FIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGR 372
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
R DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK +
Sbjct: 373 RELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRI 432
Query: 447 ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPR
Sbjct: 433 ISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPR 492
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
QLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA
Sbjct: 493 QLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPA 552
Query: 566 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYG 624
I ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD G
Sbjct: 553 AIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 612
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 684
R RPL IVEKQ+LL+KKR I L++RE + W DLVA G
Sbjct: 613 RICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMT 671
Query: 685 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
+DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 672 PDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 727
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSV
Sbjct: 728 VYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSV 787
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
IMN+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL
Sbjct: 788 IMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLI 847
Query: 865 PPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
PG RVSG+DVIIGKT P ++DE + RYT+RD S LR SETG+VDQV++T N +
Sbjct: 848 APGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQE 907
Query: 923 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPS
Sbjct: 908 GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPS 967
Query: 983 RMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTG 1041
RMTIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TG
Sbjct: 968 RMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTG 1027
Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
R++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC
Sbjct: 1028 RKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQ 1087
Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYA
Sbjct: 1088 IAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYA 1147
Query: 1162 CKLLFQELMAMAIAPRMLT 1180
CKLLFQELM+M+IAPRM++
Sbjct: 1148 CKLLFQELMSMSIAPRMMS 1166
>UNIPROTKB|P30876 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471057
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
HOGENOM:HOG000222962 EMBL:X63563 EMBL:AK289823 EMBL:BC023503
EMBL:AF055028 IPI:IPI00027808 PIR:S28976 RefSeq:NP_000929.1
UniGene:Hs.602757 ProteinModelPortal:P30876 DIP:DIP-32910N
IntAct:P30876 MINT:MINT-1216897 STRING:P30876 PhosphoSite:P30876
DMDM:401012 PaxDb:P30876 PeptideAtlas:P30876 PRIDE:P30876
Ensembl:ENST00000314595 Ensembl:ENST00000381227 GeneID:5431
KEGG:hsa:5431 UCSC:uc003hcl.1 CTD:5431 GeneCards:GC04P057760
HGNC:HGNC:9188 HPA:HPA037506 MIM:180661 neXtProt:NX_P30876
PharmGKB:PA33508 HOVERGEN:HBG017744 InParanoid:P30876
OrthoDB:EOG4JQ3WQ PhylomeDB:P30876 GenomeRNAi:5431 NextBio:21013
ArrayExpress:P30876 Bgee:P30876 CleanEx:HS_POLR2B
Genevestigator:P30876 GermOnline:ENSG00000047315 Uniprot:P30876
Length = 1174
Score = 3990 (1409.6 bits), Expect = 0., P = 0.
Identities = 772/1159 (66%), Positives = 914/1159 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ + Y
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPR--Y 84
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +
Sbjct: 85 LLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQ 141
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
TQ K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM
Sbjct: 142 TQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRAT 266
+TN VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I AT
Sbjct: 201 ATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVAT 259
Query: 267 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
LPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL+
Sbjct: 260 LPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALN 319
Query: 327 YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
+IG RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGR
Sbjct: 320 FIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGR 379
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
R DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK +
Sbjct: 380 RELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRI 439
Query: 447 ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPR
Sbjct: 440 ISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPR 499
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
QLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA
Sbjct: 500 QLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPA 559
Query: 566 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYG 624
I ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD G
Sbjct: 560 AIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 619
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 684
R RPL IVEKQ+LL+KKR I L++RE + W DLVA G
Sbjct: 620 RICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMT 678
Query: 685 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
+DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 679 PDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 734
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSV
Sbjct: 735 VYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSV 794
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
IMN+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL
Sbjct: 795 IMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLI 854
Query: 865 PPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
PG RVSG+DVIIGKT P ++DE + RYT+RD S LR SETG+VDQV++T N +
Sbjct: 855 APGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQE 914
Query: 923 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPS
Sbjct: 915 GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPS 974
Query: 983 RMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTG 1041
RMTIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TG
Sbjct: 975 RMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTG 1034
Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
R++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC
Sbjct: 1035 RKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQ 1094
Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYA
Sbjct: 1095 IAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYA 1154
Query: 1162 CKLLFQELMAMAIAPRMLT 1180
CKLLFQELM+M+IAPRM++
Sbjct: 1155 CKLLFQELMSMSIAPRMMS 1173
>RGD|1309477 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed) polypeptide B"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1309477 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 GeneTree:ENSGT00690000102234 CTD:5431
EMBL:CH473981 RefSeq:NP_001099472.1 UniGene:Rn.153952
Ensembl:ENSRNOT00000039252 GeneID:289561 KEGG:rno:289561
NextBio:629984 Uniprot:G3V8Y5
Length = 1174
Score = 3990 (1409.6 bits), Expect = 0., P = 0.
Identities = 772/1159 (66%), Positives = 914/1159 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ + Y
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPR--Y 84
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +
Sbjct: 85 LLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQ 141
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
TQ K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM
Sbjct: 142 TQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRAT 266
+TN VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I AT
Sbjct: 201 ATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVAT 259
Query: 267 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
LPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL+
Sbjct: 260 LPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALN 319
Query: 327 YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
+IG RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGR
Sbjct: 320 FIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGR 379
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
R DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK +
Sbjct: 380 RELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRI 439
Query: 447 ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPR
Sbjct: 440 ISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPR 499
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
QLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA
Sbjct: 500 QLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPA 559
Query: 566 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYG 624
I ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD G
Sbjct: 560 AIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 619
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 684
R RPL IVEKQ+LL+KKR I L++RE + W DLVA G
Sbjct: 620 RICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMT 678
Query: 685 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
+DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 679 PDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 734
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSV
Sbjct: 735 VYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSV 794
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
IMN+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL
Sbjct: 795 IMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLI 854
Query: 865 PPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
PG RVSG+DVIIGKT P ++DE + RYT+RD S LR SETG+VDQV++T N +
Sbjct: 855 APGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQE 914
Query: 923 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPS
Sbjct: 915 GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPS 974
Query: 983 RMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTG 1041
RMTIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TG
Sbjct: 975 RMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTG 1034
Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
R++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC
Sbjct: 1035 RKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQ 1094
Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYA
Sbjct: 1095 IAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYA 1154
Query: 1162 CKLLFQELMAMAIAPRMLT 1180
CKLLFQELM+M+IAPRM++
Sbjct: 1155 CKLLFQELMSMSIAPRMMS 1173
>MGI|MGI:2388280 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:2388280 PANTHER:PTHR20856 GO:GO:0046872
GO:GO:0003677 GO:GO:0003682 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:BC038472 IPI:IPI00320034
RefSeq:NP_722493.2 UniGene:Mm.273217 ProteinModelPortal:Q8CFI7
DIP:DIP-57023N IntAct:Q8CFI7 STRING:Q8CFI7 PhosphoSite:Q8CFI7
PaxDb:Q8CFI7 PRIDE:Q8CFI7 Ensembl:ENSMUST00000031167 GeneID:231329
KEGG:mmu:231329 UCSC:uc008xwe.2 InParanoid:Q8CFI7 ChiTaRS:POLR2B
NextBio:380519 Bgee:Q8CFI7 CleanEx:MM_POLR2B Genevestigator:Q8CFI7
GermOnline:ENSMUSG00000029250 Uniprot:Q8CFI7
Length = 1174
Score = 3986 (1408.2 bits), Expect = 0., P = 0.
Identities = 771/1159 (66%), Positives = 914/1159 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ + Y
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPR--Y 84
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE +
Sbjct: 85 LLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQ 141
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
TQ K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM
Sbjct: 142 TQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRAT 266
+TN VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I AT
Sbjct: 201 ATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVAT 259
Query: 267 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
LPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL+
Sbjct: 260 LPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALN 319
Query: 327 YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
+IG RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGR
Sbjct: 320 FIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGR 379
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
R DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK +
Sbjct: 380 RELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRI 439
Query: 447 ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPR
Sbjct: 440 ISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPR 499
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
QLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA
Sbjct: 500 QLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPA 559
Query: 566 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYG 624
I ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD G
Sbjct: 560 AIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 619
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 684
R RPL IVEKQ+LL+KKR I L++RE + W DLVA G
Sbjct: 620 RICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMT 678
Query: 685 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
+DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 679 PDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 734
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSV
Sbjct: 735 VYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSV 794
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
IMN+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH Y+KLDDDGL
Sbjct: 795 IMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLI 854
Query: 865 PPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
PG RVSG+DVIIGKT P ++DE + RYT+RD S LR SETG+VDQV++T N +
Sbjct: 855 APGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQE 914
Query: 923 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPS
Sbjct: 915 GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPS 974
Query: 983 RMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTG 1041
RMTIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TG
Sbjct: 975 RMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTG 1034
Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
R++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC
Sbjct: 1035 RKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQ 1094
Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYA
Sbjct: 1095 IAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYA 1154
Query: 1162 CKLLFQELMAMAIAPRMLT 1180
CKLLFQELM+M+IAPRM++
Sbjct: 1155 CKLLFQELMSMSIAPRMMS 1173
>UNIPROTKB|F1NCB0 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 GeneTree:ENSGT00690000102234
EMBL:AADN02009110 EMBL:AADN02009111 IPI:IPI00823005
Ensembl:ENSGALT00000037965 ArrayExpress:F1NCB0 Uniprot:F1NCB0
Length = 1174
Score = 3979 (1405.7 bits), Expect = 0., P = 0.
Identities = 769/1159 (66%), Positives = 914/1159 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ + Y
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEEPPR--Y 84
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GE+ +
Sbjct: 85 LLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEDQLQ 141
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
TQ K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM
Sbjct: 142 TQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRAT 266
+TN VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I AT
Sbjct: 201 ATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVAT 259
Query: 267 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
LPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL+
Sbjct: 260 LPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALN 319
Query: 327 YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
+IG RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALGR
Sbjct: 320 FIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGR 379
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
R DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK +
Sbjct: 380 RELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRI 439
Query: 447 ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPR
Sbjct: 440 ISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPR 499
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
QLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA
Sbjct: 500 QLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPA 559
Query: 566 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYG 624
I ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD G
Sbjct: 560 AIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 619
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 684
R RPL IVEKQ+LL+KKR I L++RE + W DLVA G
Sbjct: 620 RICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMT 678
Query: 685 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
+DL + + AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 679 PDDLQEKGV----AYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 734
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSV
Sbjct: 735 VYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSV 794
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
IMN+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL
Sbjct: 795 IMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLI 854
Query: 865 PPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
PG RVSG+DVIIGKT P ++DE + R+T+RD S LR SETG+VDQV++T N +
Sbjct: 855 APGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQE 914
Query: 923 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPS
Sbjct: 915 GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPS 974
Query: 983 RMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTG 1041
RMTIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG TG
Sbjct: 975 RMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTG 1034
Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
R++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC
Sbjct: 1035 RKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQ 1094
Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PYA
Sbjct: 1095 IAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYA 1154
Query: 1162 CKLLFQELMAMAIAPRMLT 1180
CKLLFQELM+M+IAPRM++
Sbjct: 1155 CKLLFQELMSMSIAPRMMS 1173
>UNIPROTKB|F1P4F2 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:AADN02009110
EMBL:AADN02009111 IPI:IPI00580164 Ensembl:ENSGALT00000018572
ArrayExpress:F1P4F2 Uniprot:F1P4F2
Length = 1176
Score = 3970 (1402.6 bits), Expect = 0., P = 0.
Identities = 769/1160 (66%), Positives = 914/1160 (78%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ + Y
Sbjct: 28 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEEPPR--Y 85
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GE+ +
Sbjct: 86 LLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEDQLQ 142
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
TQ K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM
Sbjct: 143 TQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRAT 266
+TN VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I AT
Sbjct: 202 ATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVAT 260
Query: 267 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
LPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL+
Sbjct: 261 LPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALN 320
Query: 327 YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGY-IIHRLLLCALG 385
+IG RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY ++HRLLL ALG
Sbjct: 321 FIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYYMVHRLLLAALG 380
Query: 386 RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
RR DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK +
Sbjct: 381 RRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTR 440
Query: 446 TITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKP
Sbjct: 441 IISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKP 500
Query: 505 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 564
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISP
Sbjct: 501 RQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP 560
Query: 565 AVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDY 623
A I ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD
Sbjct: 561 AAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDA 620
Query: 624 GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXX 683
GR RPL IVEKQ+LL+KKR I L++RE + W DLVA G
Sbjct: 621 GRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAM 679
Query: 684 XXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
+DL + + AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 680 TPDDLQEKGV----AYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 735
Query: 744 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
G+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDS
Sbjct: 736 GVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDS 795
Query: 804 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
VIMN+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL
Sbjct: 796 VIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGL 855
Query: 864 APPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
PG RVSG+DVIIGKT P ++DE + R+T+RD S LR SETG+VDQV++T N
Sbjct: 856 IAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQ 915
Query: 922 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
+G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIP
Sbjct: 916 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 975
Query: 982 SRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHT 1040
SRMTIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG T
Sbjct: 976 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 1035
Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
GR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC
Sbjct: 1036 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDC 1095
Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1160
IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PY
Sbjct: 1096 QIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPY 1155
Query: 1161 ACKLLFQELMAMAIAPRMLT 1180
ACKLLFQELM+M+IAPRM++
Sbjct: 1156 ACKLLFQELMSMSIAPRMMS 1175
>FB|FBgn0262955 [details] [associations]
symbol:RpII140 "RNA polymerase II 140kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:AE014297 GO:GO:0046872
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:X05709
EMBL:BT003265 EMBL:M62972 PIR:A27826 RefSeq:NP_476706.1
UniGene:Dm.6926 ProteinModelPortal:P08266 DIP:DIP-17498N
MINT:MINT-1578011 STRING:P08266 PaxDb:P08266
EnsemblMetazoa:FBtr0082892 GeneID:41721 KEGG:dme:Dmel_CG3180
CTD:41721 FlyBase:FBgn0262955 InParanoid:P08266 OrthoDB:EOG4G1JX8
PhylomeDB:P08266 ChiTaRS:RpII140 GenomeRNAi:41721 NextBio:825231
Bgee:P08266 GermOnline:CG3180 Uniprot:P08266
Length = 1176
Score = 3904 (1379.3 bits), Expect = 0., P = 0.
Identities = 754/1158 (65%), Positives = 896/1158 (77%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S IE++ E+QH G+ +
Sbjct: 28 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE--TPPRF 85
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK K +G + E
Sbjct: 86 SLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT---KNVEGLDPVE 142
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
TQ K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSEKVLIAQEKM
Sbjct: 143 TQH-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGGSSGQYIRAT 266
+TN VYVF + KYA+ E+RS E +RP ST++V M++R S K + GQ I A
Sbjct: 202 ATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAI 260
Query: 267 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV+Q Q VAL+
Sbjct: 261 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALN 320
Query: 327 YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
+IG RGA GVT+DKRIKYAKEILQKEMLPHVG DFCETKKAY+ GY++HRLLL +LGR
Sbjct: 321 FIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGR 380
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
R DDRDHYGNKRLDLAGPLL LFR LF+ L ++VR Y QK +D GKD NL+ AIK
Sbjct: 381 RELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNI 440
Query: 447 ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
IT GL+YSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPR
Sbjct: 441 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
QLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEI+P+
Sbjct: 501 QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560
Query: 566 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYG 624
I ATKIFVNGCWVGIHRDPE L+ T +D+ +EV ++RDIR +E+RIYTD G
Sbjct: 561 AIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 620
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 684
R RPL IVE LL+KK + L++R+ + W LVA G
Sbjct: 621 RICRPLLIVENGSLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLEEETVMIAMS 679
Query: 685 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
DL Q + + AY TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 680 PYDLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
+Y+TN+ RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+GYNQEDSV
Sbjct: 737 VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 796
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
I+N S+++RGFFRS+F+RSY+D E K +E+F +P R GMR+ YDKLDDDG+
Sbjct: 797 ILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGII 856
Query: 865 PPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
PG RVSG+DV+IGKT P + DE R+++RD S LR+SETG+VDQV+LT N++
Sbjct: 857 APGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSE 916
Query: 923 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDM +T EG+ PDII+NPHAIPS
Sbjct: 917 GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPS 976
Query: 983 RMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTG 1041
RMTIG LIEC+ GK+ ++ G+ GDATPF D V V IS L + GY +RG E MYNGHTG
Sbjct: 977 RMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTG 1036
Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
R++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC
Sbjct: 1037 RKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQ 1096
Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
I+HGA+ FL+ERLF+ SD YRVH+C CGLIAIANL+ N+FEC+GCKNKT I QV +PYA
Sbjct: 1097 ISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYA 1156
Query: 1162 CKLLFQELMAMAIAPRML 1179
KLLFQELM+M IAPR++
Sbjct: 1157 AKLLFQELMSMNIAPRLM 1174
>UNIPROTKB|C9J4M6 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HGNC:HGNC:9188 IPI:IPI00873948 STRING:C9J4M6
Ensembl:ENST00000431623 UCSC:uc011caf.1 ArrayExpress:C9J4M6
Bgee:C9J4M6 Uniprot:C9J4M6
Length = 1099
Score = 3835 (1355.0 bits), Expect = 0., P = 0.
Identities = 741/1100 (67%), Positives = 870/1100 (79%)
Query: 88 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK VIK +GEE
Sbjct: 9 YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQL 65
Query: 148 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
+TQ K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 66 QTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEK 124
Query: 208 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRA 265
M+TN VYVF K+ +KYAY E RS E+ +RP ST++V ML+R AK + GQ I A
Sbjct: 125 MATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVA 183
Query: 266 TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
TLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL
Sbjct: 184 TLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVAL 243
Query: 326 DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 385
++IG RGA GVT++KRIKYAKE+LQKEMLPHVG DFCETKKAY+ GY++HRLLL ALG
Sbjct: 244 NFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 303
Query: 386 RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
RR DDRDHYGNKRLDLAGPLL LFR +F+ L ++VR Y QK +D GKD NL+ AIK +
Sbjct: 304 RRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTR 363
Query: 446 TITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
I+ GLKYSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKP
Sbjct: 364 IISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKP 423
Query: 505 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 564
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISP
Sbjct: 424 RQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP 483
Query: 565 AVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDY 623
A I ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD
Sbjct: 484 AAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDA 543
Query: 624 GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXX 683
GR RPL IVEKQ+LL+KKR I L++RE + W DLVA G
Sbjct: 544 GRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAM 602
Query: 684 XXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
+DL + E AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 603 TPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 658
Query: 744 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
G+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDS
Sbjct: 659 GVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDS 718
Query: 804 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
VIMN+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL
Sbjct: 719 VIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGL 778
Query: 864 APPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
PG RVSG+DVIIGKT P ++DE + RYT+RD S LR SETG+VDQV++T N
Sbjct: 779 IAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 838
Query: 922 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
+G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIP
Sbjct: 839 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 898
Query: 982 SRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHT 1040
SRMTIG LIEC+ GKV+A+ G+ GDATPF D V V IS L GY +RG E +YNG T
Sbjct: 899 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 958
Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
GR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC
Sbjct: 959 GRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDC 1018
Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1160
IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I V +PY
Sbjct: 1019 QIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPY 1078
Query: 1161 ACKLLFQELMAMAIAPRMLT 1180
ACKLLFQELM+M+IAPRM++
Sbjct: 1079 ACKLLFQELMSMSIAPRMMS 1098
>WB|WBGene00016140 [details] [associations]
symbol:rpb-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:FO080680 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA EMBL:U10333 PIR:E88445
PIR:T43701 RefSeq:NP_498047.1 ProteinModelPortal:Q10578 SMR:Q10578
STRING:Q10578 PaxDb:Q10578 EnsemblMetazoa:C26E6.4.1
EnsemblMetazoa:C26E6.4.2 GeneID:175668 KEGG:cel:CELE_C26E6.4
CTD:175668 WormBase:C26E6.4 GeneTree:ENSGT00690000102234
HOGENOM:HOG000222962 InParanoid:Q10578 NextBio:889138
Uniprot:Q10578
Length = 1193
Score = 3788 (1338.5 bits), Expect = 0., P = 0.
Identities = 735/1174 (62%), Positives = 884/1174 (75%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VISAYF+EKGLVRQQLDSFDEF+Q +Q IV++S +E++ E+QH + A+ +
Sbjct: 34 WVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAK--F 91
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F QIYLSKP E DG + P ARLRNLTY++PLYVD+TK V + E+V
Sbjct: 92 SLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSATEKV-- 149
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
+ KVF+GKVP+MLRSSYC L +++DLTEL ECP D GGYF+INGSEKVLIAQEKM
Sbjct: 150 ---YDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKM 206
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS--GQYIRAT 266
+TN VYVF + KYA+ E RS E+ +RP STM+V ML+R G + GQ I
Sbjct: 207 ATNTVYVFSMKD-GKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGI 265
Query: 267 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
LPYI+ EIPI+IVFRALGFV+D+DIL HI YDF D +MME+++PSL+EAFVIQ Q VAL+
Sbjct: 266 LPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVIQEQNVALN 325
Query: 327 YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
+IG RGA GVTR++RIKYA+EILQKE+LPHVG + CETKKA++ GY++HRLLL ALGR
Sbjct: 326 FIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGR 385
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
R DDRDH GNKRLDLAGPLL LFR LFR L +++R QK ++ D L +K T
Sbjct: 386 RELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALDVCVKTST 445
Query: 447 ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
IT GL YSLATGNWG Q A +RAGVSQVLNRLTY +TLSHLRR NSPIGREGKLAKPR
Sbjct: 446 ITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPR 505
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
QLHN+QWGM+CPAETPEGQA GLVKNLALM YI+VGS PILEFLEEW EN EE+SP+
Sbjct: 506 QLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPS 565
Query: 566 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYG 624
I ATKIFVNG WVGIHR+P+ L+ T +D+ +EV +VRDIR +E+RIYTD G
Sbjct: 566 AIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAG 625
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQR-ESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXX 683
R RPL IVE Q+L +KKR I L++ + W DLV G
Sbjct: 626 RVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAM 685
Query: 684 XXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
DL Y DT+THCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 686 MPEDLRSG------GYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 739
Query: 744 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
G+Y TN+ RMDTLA+VLYYPQKPLVTTR+ME+L F +LPAGINAIVAI YSGYNQEDS
Sbjct: 740 GVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDS 799
Query: 804 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
VIMN S+IDRG FRS+F+RSYRD E + +E +P R GMRH YDKLD+DG+
Sbjct: 800 VIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGI 859
Query: 864 APPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
PG RVSG+DVIIGKT P D+ +Y +RD S LR SETG+VDQV+L+ N+
Sbjct: 860 ISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSLNS 919
Query: 922 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
DG +FVK+R+RSVR+PQIGDKF+SRHGQKGT+G+ Y QEDMP+T EG+TPDII+NPHA+P
Sbjct: 920 DGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVP 979
Query: 982 SRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHT 1040
SRMTIG LIEC+ GK++A+ G+ GDATPF D V V IS L + GY +RG E MYNGHT
Sbjct: 980 SRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHT 1039
Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
G++LT IF GPTYYQRLKHMVDDKIHSR RGP+Q++ RQP EGR+RDGGLRFGEMERDC
Sbjct: 1040 GKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDC 1099
Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1160
I+HGA+ FL+ERLF+ SD Y V+VC +CGLI +ANL+ NSFEC+ C+NKT + V IPY
Sbjct: 1100 QISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPY 1159
Query: 1161 ACKLLFQELMAMAIAPRMLTK-EDTKQSKDHKKK 1193
ACKLLFQELM+M+IAPR++ K +K+SK H+ +
Sbjct: 1160 ACKLLFQELMSMSIAPRLMVKPRQSKRSK-HQSE 1192
>ZFIN|ZDB-GENE-041008-1 [details] [associations]
symbol:polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-041008-1
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102234 EMBL:AL954718 EMBL:CABZ01048450
EMBL:CABZ01048451 IPI:IPI00944344 Ensembl:ENSDART00000124865
ArrayExpress:F1QXY8 Bgee:F1QXY8 Uniprot:F1QXY8
Length = 1117
Score = 3714 (1312.5 bits), Expect = 0., P = 0.
Identities = 723/1103 (65%), Positives = 857/1103 (77%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+ + Y
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPR--Y 84
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK +IK DGEE +
Sbjct: 85 LLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK---DGEEQQQ 141
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
TQ K FIGK+PIMLRS+YC L +++DL EL ECP D GGYFIINGSEKVLIAQEKM
Sbjct: 142 TQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRAT 266
+TN VYVF K+ +KYAY E RS E+ +RP ST++V M++R K + GQ I +T
Sbjct: 201 ATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVST 259
Query: 267 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
LPYIR E+PIIIVFRALGFV+D+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL+
Sbjct: 260 LPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALN 319
Query: 327 YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
+IG RGA GVT+++RIKYAKE+LQKE+LPHVG DFCETKKAY+ GY++HRLLL ALGR
Sbjct: 320 FIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGR 379
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
R DDRDHYGNKRLDLAGPLL LFR +F+ L +++R Y QK +D GKD NL+ AIK +
Sbjct: 380 RELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRI 439
Query: 447 ITSGLKYSLATGNWGQANAAG-TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
I+ GLKYSLATGNWG A RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPR
Sbjct: 440 ISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 499
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
QLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEISPA
Sbjct: 500 QLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPA 559
Query: 566 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVN-TEVGVVRDIRLKELRIYTDYG 624
I ATKIFVNGCWVGIH+DPE L+ T +D+ +EV ++RDIR +E+RIYTD G
Sbjct: 560 AIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 619
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 684
R RPL IVEKQ+LL+K+R I L++RE + W DLVA G
Sbjct: 620 RICRPLLIVEKQKLLLKRRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMT 678
Query: 685 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
+DL + + AY TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 679 PDDLQEKGV----AYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 734
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSV
Sbjct: 735 VYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSV 794
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
IMN+S++DRGFFRS+F+RSY+++E K G +E F +P R GMRH YDKLDDDGL
Sbjct: 795 IMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLI 854
Query: 865 PPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
PG RVSGEDVIIGKT P + DE RYT+RD S LR SETG+VDQV++T N +
Sbjct: 855 APGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQE 914
Query: 923 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QE + +EGITPDII+NPHAIPS
Sbjct: 915 GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEVRVYIIEGITPDIIINPHAIPS 974
Query: 983 RMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTG 1041
RMT+G LIEC+ GKV+A+ G+ GDATPF D V V +S L + GY +RG E +YNG TG
Sbjct: 975 RMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTG 1034
Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR--DGGLRFGEMERD 1099
R+LT+ IF+GPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGRSR DGGLRFGEMERD
Sbjct: 1035 RKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRRSDGGLRFGEMERD 1094
Query: 1100 CMIAHGASHFLKERLFDQSDAYR 1122
C IAHGA+ FLKERLF+ SD Y+
Sbjct: 1095 CQIAHGAAQFLKERLFEASDPYQ 1117
>GENEDB_PFALCIPARUM|PFB0715w [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase II
second largest subunit, putative" species:5833 "Plasmodium
falciparum" [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006366 EMBL:AE001362 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 HOGENOM:HOG000222962 RefSeq:XP_001349662.2
ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 2277 (806.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 442/871 (50%), Positives = 603/871 (69%)
Query: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
+W VI ++F GLV QQ++S+++FI+ MQEI+DE IEIRP+ Q+ + + I
Sbjct: 36 SWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRTDRDEN-DNII 94
Query: 88 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR--VIKKGHDGEE 145
Y + FGQ+ L +P E + L+P+ ARLRNLTYS+ +Y+D+ + +I +
Sbjct: 95 YSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKKPV 154
Query: 146 VTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ 205
+ E + ++ +G++P+ML+S +C E ++ ++GEC YDQGGYFI+NG EKVL+AQ
Sbjct: 155 LKEKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKVLVAQ 214
Query: 206 EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS-AKGGS--SGQY 262
E+M+ N +YVFKK+QP+K+ +VAE+RS E +++ S V+M +R+ ++ GS SG
Sbjct: 215 ERMANNFIYVFKKKQPSKFGWVAEIRSQME-RSQATSGFSVKMKTRSGGSQYGSNKSGGQ 273
Query: 263 IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
+ ATLPYIRTEI + I+FRALG +D+DIL+ I YDF D M+ LR +LEE Q
Sbjct: 274 LVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEECIEYPTQD 333
Query: 323 VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
V LD+IGKRG TVG +R+KRI YAKE+L+KE+LPH+GT E+KK+Y+ GY+I+RLLL
Sbjct: 334 VCLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINRLLLA 393
Query: 383 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
LGR EDDRDH+G KRLD+AGPL+ F FRK+ +DVR +Q+ +DN K ++ AI
Sbjct: 394 ELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVRRVLQRQIDNNKPFDVAGAI 453
Query: 443 KA-KTITSGLKYSLATGNWGQ-ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 500
++ IT G++Y LATGNWG+ + R GV+QVLNRLTY+S LSHLRRLN+P+GREGK
Sbjct: 454 RSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLGREGK 513
Query: 501 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+LM I+VG++ I EFL EWG E+ +
Sbjct: 514 MAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTEWGLESLD 573
Query: 561 EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIY 620
E+ P ++ + K+F+NG WVG + L++T D++ E +VRD+ KE++I+
Sbjct: 574 EVPPELMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCDISPEASIVRDVNSKEIKIF 633
Query: 621 TDYGRCSRPLFIVE----KQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXX 676
TD GR RPL++V+ + +L + K + +++ PE W L+ +G
Sbjct: 634 TDSGRAMRPLYVVKNVNGENKLKLTKEHVNNIEKY--PETYNWDYLIQEGIIEYIDCEEE 691
Query: 677 XXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
+DL Y + +THCEIHPSLILGVCASIIPF DHNQSPRNTYQS
Sbjct: 692 ETTMISMFIDDLKTGT-----GYYNNFTHCEIHPSLILGVCASIIPFSDHNQSPRNTYQS 746
Query: 737 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
AMGKQAMGIYVTN+ R+DTLA++LYYPQKPLV T+ ME+L FR+LPAGINAIVAI CY+
Sbjct: 747 AMGKQAMGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIVAIMCYT 806
Query: 797 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 856
GYNQEDS+IMNQSSIDRG FRS+F+R+Y EEK+ G+L+ E F +P ++ G Y
Sbjct: 807 GYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKPSVRVVKNLKRGDYT 866
Query: 857 KLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
KLDDDGL PG RV G+D+IIGK +P DE
Sbjct: 867 KLDDDGLIAPGIRVLGDDIIIGKVSPNIDDE 897
Score = 1048 (374.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 186/286 (65%), Positives = 240/286 (83%)
Query: 897 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
++D S+SLR +E G++D V+L++N+ G +F KV+VRSVRIPQIGDKF+SRHGQKGT+G+T
Sbjct: 1054 KKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGIT 1113
Query: 957 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
Y EDMP++ GI PDII+NPHA+PSRMTIG L+EC+ GKVAA G EGDATPF+ +TV
Sbjct: 1114 YRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSKITVQ 1173
Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
IS+ LH GY+ G E +YNGH GR L + IF+GPTYYQRLKHMV+DKIH+R RGP+ +
Sbjct: 1174 EISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTM 1233
Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
+TRQP EGRSRDGGLRFGEMERDCMI+HG++ LKERLF++SDAYRVHVC++CGL IA+
Sbjct: 1234 ITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLCCIAD 1293
Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
+ KN++EC C +KT+I Q+++PYACKLLFQELM MAI P+++ ++
Sbjct: 1294 INKNAYECTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVLED 1339
>UNIPROTKB|O96236 [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006366 EMBL:AE001362
GO:GO:0003899 GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_001349662.2 ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 2277 (806.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 442/871 (50%), Positives = 603/871 (69%)
Query: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
+W VI ++F GLV QQ++S+++FI+ MQEI+DE IEIRP+ Q+ + + I
Sbjct: 36 SWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRTDRDEN-DNII 94
Query: 88 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR--VIKKGHDGEE 145
Y + FGQ+ L +P E + L+P+ ARLRNLTYS+ +Y+D+ + +I +
Sbjct: 95 YSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKKPV 154
Query: 146 VTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ 205
+ E + ++ +G++P+ML+S +C E ++ ++GEC YDQGGYFI+NG EKVL+AQ
Sbjct: 155 LKEKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKVLVAQ 214
Query: 206 EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS-AKGGS--SGQY 262
E+M+ N +YVFKK+QP+K+ +VAE+RS E +++ S V+M +R+ ++ GS SG
Sbjct: 215 ERMANNFIYVFKKKQPSKFGWVAEIRSQME-RSQATSGFSVKMKTRSGGSQYGSNKSGGQ 273
Query: 263 IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
+ ATLPYIRTEI + I+FRALG +D+DIL+ I YDF D M+ LR +LEE Q
Sbjct: 274 LVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEECIEYPTQD 333
Query: 323 VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
V LD+IGKRG TVG +R+KRI YAKE+L+KE+LPH+GT E+KK+Y+ GY+I+RLLL
Sbjct: 334 VCLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINRLLLA 393
Query: 383 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
LGR EDDRDH+G KRLD+AGPL+ F FRK+ +DVR +Q+ +DN K ++ AI
Sbjct: 394 ELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVRRVLQRQIDNNKPFDVAGAI 453
Query: 443 KA-KTITSGLKYSLATGNWGQ-ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 500
++ IT G++Y LATGNWG+ + R GV+QVLNRLTY+S LSHLRRLN+P+GREGK
Sbjct: 454 RSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLGREGK 513
Query: 501 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+LM I+VG++ I EFL EWG E+ +
Sbjct: 514 MAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTEWGLESLD 573
Query: 561 EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIY 620
E+ P ++ + K+F+NG WVG + L++T D++ E +VRD+ KE++I+
Sbjct: 574 EVPPELMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCDISPEASIVRDVNSKEIKIF 633
Query: 621 TDYGRCSRPLFIVE----KQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXX 676
TD GR RPL++V+ + +L + K + +++ PE W L+ +G
Sbjct: 634 TDSGRAMRPLYVVKNVNGENKLKLTKEHVNNIEKY--PETYNWDYLIQEGIIEYIDCEEE 691
Query: 677 XXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
+DL Y + +THCEIHPSLILGVCASIIPF DHNQSPRNTYQS
Sbjct: 692 ETTMISMFIDDLKTGT-----GYYNNFTHCEIHPSLILGVCASIIPFSDHNQSPRNTYQS 746
Query: 737 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
AMGKQAMGIYVTN+ R+DTLA++LYYPQKPLV T+ ME+L FR+LPAGINAIVAI CY+
Sbjct: 747 AMGKQAMGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIVAIMCYT 806
Query: 797 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 856
GYNQEDS+IMNQSSIDRG FRS+F+R+Y EEK+ G+L+ E F +P ++ G Y
Sbjct: 807 GYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKPSVRVVKNLKRGDYT 866
Query: 857 KLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
KLDDDGL PG RV G+D+IIGK +P DE
Sbjct: 867 KLDDDGLIAPGIRVLGDDIIIGKVSPNIDDE 897
Score = 1048 (374.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 186/286 (65%), Positives = 240/286 (83%)
Query: 897 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
++D S+SLR +E G++D V+L++N+ G +F KV+VRSVRIPQIGDKF+SRHGQKGT+G+T
Sbjct: 1054 KKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGIT 1113
Query: 957 YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
Y EDMP++ GI PDII+NPHA+PSRMTIG L+EC+ GKVAA G EGDATPF+ +TV
Sbjct: 1114 YRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSKITVQ 1173
Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
IS+ LH GY+ G E +YNGH GR L + IF+GPTYYQRLKHMV+DKIH+R RGP+ +
Sbjct: 1174 EISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTM 1233
Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
+TRQP EGRSRDGGLRFGEMERDCMI+HG++ LKERLF++SDAYRVHVC++CGL IA+
Sbjct: 1234 ITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLCCIAD 1293
Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
+ KN++EC C +KT+I Q+++PYACKLLFQELM MAI P+++ ++
Sbjct: 1294 INKNAYECTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVLED 1339
>POMBASE|SPAC23G3.01 [details] [associations]
symbol:rpb2 "RNA polymerase II complex subunit Rpb2"
species:4896 "Schizosaccharomyces pombe" [GO:0000775 "chromosome,
centromeric region" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0031048 "chromatin
silencing by small RNA" evidence=IMP] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PomBase:SPAC23G3.01 PANTHER:PTHR20856 GO:GO:0005829
EMBL:CU329670 GO:GO:0000775 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0003723 GO:GO:0000790 GO:GO:0006366
GO:GO:0031048 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:3H0G
PDBsum:3H0G KO:K03010 OMA:IMIVFRA HOGENOM:HOG000222962 EMBL:D13337
PIR:S35548 PIR:T50175 RefSeq:NP_593101.2 ProteinModelPortal:Q02061
IntAct:Q02061 MINT:MINT-1214536 STRING:Q02061
EnsemblFungi:SPAC23G3.01.1 GeneID:2541446 KEGG:spo:SPAC23G3.01
OrthoDB:EOG45HW5D EvolutionaryTrace:Q02061 NextBio:20802548
Uniprot:Q02061
Length = 1210
Score = 1989 (705.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 391/660 (59%), Positives = 497/660 (75%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VIS++FEE L RQQL SFDEF+QNTMQEIVD+ + + + +QH G Q D Y
Sbjct: 18 WTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHT-GAQGDVTRR-Y 75
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD----GE 144
+I+FGQIYLS+P MTE+DG T T+FP+ ARLRNLTYS+PLYVD+ K+V+ GE
Sbjct: 76 EINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGE 135
Query: 145 E--VTETQDF--TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
E + E +D +KVFIGK+PIMLRS++C L S+ +L +L ECPYDQGGYFIINGSEK
Sbjct: 136 EEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEK 195
Query: 201 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
V+IAQE+ + N V VFKK P+ AYVAE+RS E +R S+M +++++R + +SG
Sbjct: 196 VIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTE---NSG 252
Query: 261 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
Q IRATLPYIR++IPI+IVFRALG V D+DILEHICYD D QM+E+++P +EEAFVIQ+
Sbjct: 253 QTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQD 312
Query: 321 QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
+ +ALDYIGKRG+T GVTR+KR++YA +ILQKE+LPH+ T + ET+KA++ GY+IHR+L
Sbjct: 313 KDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRML 372
Query: 381 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
LCAL RR DDRDH+G KRLDLAGPLL LFRMLFRK+TRDV Y+QKCV+ ++ NL
Sbjct: 373 LCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNREFNLTL 432
Query: 441 AIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 499
A+K+ IT+GL+YSLATGNWG Q + R GVSQVLNR T+ASTLSHLRR N+PIGR+G
Sbjct: 433 AVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPIGRDG 492
Query: 500 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM Y++VGS + PI+EFLEEWG E
Sbjct: 493 KLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETL 552
Query: 560 EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRI 619
E+ +P+ P ATK+FVNG W+G+HRDP L +T +D++ EV +VRDIR KELR+
Sbjct: 553 EDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDIREKELRL 612
Query: 620 YTDYGRCSRPLFIVEKQ-------RLLIKKRDIIAL-QQRE----SPEDG-GWHDLVAKG 666
+TD GR RPLFIV+ L I+K I L + ++ PE GW LV+ G
Sbjct: 613 FTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRFGWTALVSSG 672
Score = 1877 (665.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 347/493 (70%), Positives = 415/493 (84%)
Query: 692 RLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 750
R+ P + +THCEIHP++ILG+ ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY
Sbjct: 715 RVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNY 774
Query: 751 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 810
Q RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQ+S
Sbjct: 775 QVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQAS 834
Query: 811 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 870
IDRG FRS+F+R+Y D+EKK+G V E+F RP RS T+ M+HG+YDKL+DDGL PGTRV
Sbjct: 835 IDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRV 894
Query: 871 SGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 928
SGED+IIGKT PI D E GQ ++ + +RD S LR +E+G+VDQV++TTN +GL+FVK
Sbjct: 895 SGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVK 954
Query: 929 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
VR+RS RIPQIGDKF+SRHGQKGT+GMTY EDMP++ +GI PDII+NPHAIPSRMT+
Sbjct: 955 VRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAH 1014
Query: 989 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 1048
L+EC + KV+A G EGDATPFTDVTV+ +SK L G+Q RGFE MY+GHTGR+L A +
Sbjct: 1015 LVECQLSKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQV 1074
Query: 1049 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 1108
FLGPTYYQRLKH+VDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERDC I+HG S
Sbjct: 1075 FLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSS 1134
Query: 1109 FLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1168
L+ERLFD SDAYRV VC+ CGLIAIA+ KK+S+ECR C+N+T QV++PYA KLLFQE
Sbjct: 1135 VLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQE 1194
Query: 1169 LMAMAIAPRMLTK 1181
LM+M IAPR+ TK
Sbjct: 1195 LMSMNIAPRLFTK 1207
>SGD|S000005677 [details] [associations]
symbol:RPB2 "RNA polymerase II second largest subunit B150"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005677 PANTHER:PTHR20856 GO:GO:0005739
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006366
GO:GO:0003899 EMBL:U55020 RefSeq:NP_014796.3 GeneID:854324
KEGG:sce:YOR153W KO:K08711 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:1I3Q
PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U
PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG
PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63
PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7
PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG
PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ
PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ
PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2
PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16
PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H
PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I
PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS
PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK
PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T
PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG
PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y
PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I
PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9
PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK
PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3
PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15
PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q
PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 OrthoDB:EOG45HW5D
EMBL:M15693 EMBL:Z75059 EMBL:AF527884 PIR:A25884 RefSeq:NP_014794.3
ProteinModelPortal:P08518 DIP:DIP-14N IntAct:P08518
MINT:MINT-654304 STRING:P08518 PaxDb:P08518 PeptideAtlas:P08518
PRIDE:P08518 EnsemblFungi:YOR151C GeneID:854322 KEGG:sce:YOR151C
CYGD:YOR151c EvolutionaryTrace:P08518 NextBio:976360
ArrayExpress:P08518 Genevestigator:P08518 GermOnline:YOR151C
Uniprot:P08518
Length = 1224
Score = 1930 (684.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 357/485 (73%), Positives = 413/485 (85%)
Query: 699 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
+A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A
Sbjct: 734 HATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMA 793
Query: 759 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
+LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRS
Sbjct: 794 NILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRS 853
Query: 819 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
LFFRSY D+EKK G + E F +P R+NT+ M+HG+YDKLDDDGL PG RVSGEDVIIG
Sbjct: 854 LFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIG 913
Query: 879 KTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 936
KTTPIS DE + GQ + Y ++RD S LR +E G+VDQVL+TTN DGL+FVKVRVR+ +I
Sbjct: 914 KTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKI 973
Query: 937 PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 996
PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+ LIEC++ K
Sbjct: 974 PQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSK 1033
Query: 997 VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
VAA G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A IF GPTYYQ
Sbjct: 1034 VAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQ 1093
Query: 1057 RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFD 1116
RL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL +
Sbjct: 1094 RLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLME 1153
Query: 1117 QSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIA 1175
SDA+RVH+C CGL+ IA L N FEC+GC NK DI Q+HIPYA KLLFQELMAM I
Sbjct: 1154 ASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNIT 1213
Query: 1176 PRMLT 1180
PR+ T
Sbjct: 1214 PRLYT 1218
Score = 1807 (641.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 358/653 (54%), Positives = 475/653 (72%)
Query: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
+WAVISA+F EKGLV QQLDSF++F+ T+Q+I+ E + + + +QH +SD
Sbjct: 30 SWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTT--ESDNISRK 87
Query: 88 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK----GHD- 142
Y+ISFG+IY++KPM+ ESDG T L+P+ ARLRNLTYS+ L+VDV KR + G +
Sbjct: 88 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGREL 147
Query: 143 -----GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 197
EE + + KVFIG++PIMLRS C L + +E DL +L ECP+D GGYFIING
Sbjct: 148 KYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIING 207
Query: 198 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
SEKVLIAQE+ + N V VFKK P+ ++VAE+RS E +R ST+ V++ R G
Sbjct: 208 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRE----G 263
Query: 258 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
SS + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD D QM+E+L+P +E+ FV
Sbjct: 264 SSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFV 323
Query: 318 IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
IQ+++ ALD+IG+RG +G+ ++KRI+YAK+ILQKE LPH+ + E++KA++ GY+I+
Sbjct: 324 IQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMIN 383
Query: 378 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+ LF+KLT+D+ Y+Q+ V+ D N
Sbjct: 384 RLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFN 443
Query: 438 LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
++ AI AKTITSGLKY+LATGNWG Q A +RAGVSQVLNR TY+STLSHLRR N+PIG
Sbjct: 444 MKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIG 503
Query: 497 REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
R+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+ PI+ FL EWG
Sbjct: 504 RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGM 563
Query: 557 ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKE 616
E E+ P P AT++FVNG W G+HR+P L++T D+N EV ++RDIR KE
Sbjct: 564 EPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKE 623
Query: 617 LRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-DGGWHDL 662
L+I+TD GR RPLFIVE + L ++K I L E + +GG+ D+
Sbjct: 624 LKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDV 676
>CGD|CAL0004145 [details] [associations]
symbol:orf19.3349 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 1898 (673.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 351/483 (72%), Positives = 411/483 (85%)
Query: 702 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A +L
Sbjct: 744 TYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANIL 803
Query: 762 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
YYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLFF
Sbjct: 804 YYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFF 863
Query: 822 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
RSY D EK+ G E F +P RS+T+ ++HG+Y+KLD+DGL PG RVSGED+IIGKTT
Sbjct: 864 RSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTT 923
Query: 882 PISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
PI D E GQ ++Y T+RD S LR +E+G+VDQVLLTTN DG +FVKVR+R+ ++PQI
Sbjct: 924 PIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQI 983
Query: 940 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
GDKF+SRHGQKGT+G+TY EDMP+T EGI PD+I+NPHAIPSRMT+ LIEC++ KV++
Sbjct: 984 GDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSS 1043
Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
G EGDA+PFTDVT + IS L GYQ RGFE MYNGHTG++L A +F GPTYYQRL+
Sbjct: 1044 LSGFEGDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLR 1103
Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL + SD
Sbjct: 1104 HMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASD 1163
Query: 1120 AYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
A+RVHVC CGL++ IANLKKN FECR CKNKT+I Q+HIPYA KLLFQELMAM I+PR+
Sbjct: 1164 AFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1223
Query: 1179 LTK 1181
T+
Sbjct: 1224 YTE 1226
Score = 1827 (648.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 352/616 (57%), Positives = 463/616 (75%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VI+++F+EKGLV QQLDSFDEF++ ++QE+V E + + + +QH + D Y
Sbjct: 26 WTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHT--SEKDHENKRY 83
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK------KGHD 142
+I+FG+IY+SKP TE DG T +FP+ ARLRNLTYS+PLYVD+T +V K K ++
Sbjct: 84 EITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDDNKRKDNE 143
Query: 143 GEEVTETQDF---TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
E + E D TKVF+GKVPIMLRS +C L +E + EL ECPYD GGYF+INGSE
Sbjct: 144 LEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSE 203
Query: 200 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
KVLIAQE+ + N V VFKK P+ ++VAE+RS E +R S+M +++ R G S
Sbjct: 204 KVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK--GVS 261
Query: 260 GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
G+ I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD D QM+E+L+P +EE FVIQ
Sbjct: 262 GRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQ 321
Query: 320 NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
++VALD+IG+RG +G+ R+KRI+YAK+ILQKE+LP++ + ET+KA++ GY+++RL
Sbjct: 322 EREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRL 380
Query: 380 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
LLCAL R+ DDRDH+G KRLDLAGPLL LFR+LF+KLT+D+ Y+Q+CV+NG D N+
Sbjct: 381 LLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGGDFNVT 440
Query: 440 FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLNR TY+STLSHLRR N+PIGR+
Sbjct: 441 LAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRD 500
Query: 499 GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+ + PIL FL ++G E
Sbjct: 501 GKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFLRDYGLEV 560
Query: 559 FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELR 618
E+ P+ P +T++FVNG WVG+HRDP LV D++ EV ++RDIR KE +
Sbjct: 561 LEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLSPEVSIIRDIREKEFK 620
Query: 619 IYTDYGRCSRPLFIVE 634
I+TD GR RPLFIV+
Sbjct: 621 IFTDAGRVYRPLFIVD 636
>UNIPROTKB|Q5A8Y5 [details] [associations]
symbol:RPB140 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0042493 "response to drug"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 1898 (673.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 351/483 (72%), Positives = 411/483 (85%)
Query: 702 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A +L
Sbjct: 744 TYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANIL 803
Query: 762 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
YYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLFF
Sbjct: 804 YYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFF 863
Query: 822 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
RSY D EK+ G E F +P RS+T+ ++HG+Y+KLD+DGL PG RVSGED+IIGKTT
Sbjct: 864 RSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTT 923
Query: 882 PISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
PI D E GQ ++Y T+RD S LR +E+G+VDQVLLTTN DG +FVKVR+R+ ++PQI
Sbjct: 924 PIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQI 983
Query: 940 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
GDKF+SRHGQKGT+G+TY EDMP+T EGI PD+I+NPHAIPSRMT+ LIEC++ KV++
Sbjct: 984 GDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSS 1043
Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
G EGDA+PFTDVT + IS L GYQ RGFE MYNGHTG++L A +F GPTYYQRL+
Sbjct: 1044 LSGFEGDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLR 1103
Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL + SD
Sbjct: 1104 HMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASD 1163
Query: 1120 AYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
A+RVHVC CGL++ IANLKKN FECR CKNKT+I Q+HIPYA KLLFQELMAM I+PR+
Sbjct: 1164 AFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1223
Query: 1179 LTK 1181
T+
Sbjct: 1224 YTE 1226
Score = 1827 (648.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 352/616 (57%), Positives = 463/616 (75%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VI+++F+EKGLV QQLDSFDEF++ ++QE+V E + + + +QH + D Y
Sbjct: 26 WTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHT--SEKDHENKRY 83
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK------KGHD 142
+I+FG+IY+SKP TE DG T +FP+ ARLRNLTYS+PLYVD+T +V K K ++
Sbjct: 84 EITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDDNKRKDNE 143
Query: 143 GEEVTETQDF---TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
E + E D TKVF+GKVPIMLRS +C L +E + EL ECPYD GGYF+INGSE
Sbjct: 144 LEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSE 203
Query: 200 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
KVLIAQE+ + N V VFKK P+ ++VAE+RS E +R S+M +++ R G S
Sbjct: 204 KVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK--GVS 261
Query: 260 GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
G+ I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD D QM+E+L+P +EE FVIQ
Sbjct: 262 GRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQ 321
Query: 320 NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
++VALD+IG+RG +G+ R+KRI+YAK+ILQKE+LP++ + ET+KA++ GY+++RL
Sbjct: 322 EREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRL 380
Query: 380 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
LLCAL R+ DDRDH+G KRLDLAGPLL LFR+LF+KLT+D+ Y+Q+CV+NG D N+
Sbjct: 381 LLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGGDFNVT 440
Query: 440 FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLNR TY+STLSHLRR N+PIGR+
Sbjct: 441 LAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRD 500
Query: 499 GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+ + PIL FL ++G E
Sbjct: 501 GKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFLRDYGLEV 560
Query: 559 FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELR 618
E+ P+ P +T++FVNG WVG+HRDP LV D++ EV ++RDIR KE +
Sbjct: 561 LEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLSPEVSIIRDIREKEFK 620
Query: 619 IYTDYGRCSRPLFIVE 634
I+TD GR RPLFIV+
Sbjct: 621 IFTDAGRVYRPLFIVD 636
>ASPGD|ASPL0000039770 [details] [associations]
symbol:AN9120 species:162425 "Emericella nidulans"
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA HOGENOM:HOG000222962 EnsemblFungi:CADANIAT00009490
Uniprot:C8VK81
Length = 1252
Score = 1858 (659.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 350/484 (72%), Positives = 405/484 (83%)
Query: 700 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+ RM+T+A
Sbjct: 761 AHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMAN 820
Query: 760 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
+LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSL
Sbjct: 821 ILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 880
Query: 820 FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
F+R+Y D EK +G V E F +P RS+T+GMR G+YDKLD+DG+ PG RVSGED+IIGK
Sbjct: 881 FYRTYSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPGVRVSGEDIIIGK 940
Query: 880 TTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
T P++ D E GQ ++ +T+ D S LR +E G+VDQVL+TT D LR VKVR+R ++P
Sbjct: 941 TAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMTKVP 1000
Query: 938 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
QIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD+I+NPHAIPSRMTI LIEC + KV
Sbjct: 1001 QIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKV 1060
Query: 998 AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
+A G EGDATPFTDVTVD+IS+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 1061 SALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 1120
Query: 1058 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 1117
L+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD
Sbjct: 1121 LRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDV 1180
Query: 1118 SDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAP 1176
SD +RVH+C+ CGL+ IA LKK FECR C NK I QVHIPYA KLLFQEL AM I+
Sbjct: 1181 SDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNISA 1240
Query: 1177 RMLT 1180
RM T
Sbjct: 1241 RMFT 1244
Score = 1511 (537.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 293/527 (55%), Positives = 386/527 (73%)
Query: 144 EEVTETQDFTK---VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
EE+ D K V IGK+PIML+S YC L E+ L + ECPYD GGYFIINGSEK
Sbjct: 164 EEMALPPDQAKEETVHIGKMPIMLKSKYCLLRDLGEQALYDWNECPYDSGGYFIINGSEK 223
Query: 201 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR-TSAKGGSS 259
VLIAQE+ + N V VFKK P+ YVAE+RS E +R S + +++ + SAKGG
Sbjct: 224 VLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSAKGGF- 282
Query: 260 GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
G IR+TLPYI+ +IPI+IVFRALG V+D+DIL HICYD DT M+E+L+P +EE FVIQ
Sbjct: 283 GPTIRSTLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQ 342
Query: 320 NQQVALDYIGKRGATVG-VTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
+++VALD+I KRG++ + ++R++YA+EI+QKE+LPH+ + ET+KA++ GY++HR
Sbjct: 343 DREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHR 402
Query: 379 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
LL CALGRR DDRDH+G KRLDLAGPLL LFR+LF ++TRD++ YVQ+CV++ +++ L
Sbjct: 403 LLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVESDREIYL 462
Query: 439 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
+KA T+T GL+Y+LATGNWG Q AA +AGVSQVL+R TYASTLSHLRR N+PIGR
Sbjct: 463 NVGLKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGR 522
Query: 498 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ + E
Sbjct: 523 DGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNME 582
Query: 558 NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKEL 617
EE P V P ATK+FVNG WVG+HR P LV+T ++ EV ++RDIR +E
Sbjct: 583 VLEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVETMQALRRRNMISHEVSLIRDIREREF 642
Query: 618 RIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQ-RESPED 656
+I+TD GR RPLF+V+ L++ K I L++ +E P D
Sbjct: 643 KIFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHIRKLEEDKELPPD 689
Score = 257 (95.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 46/110 (41%), Positives = 71/110 (64%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W VIS++F+ KGLV QQLDSFDEFI +T+QE+V+E + + + + Y
Sbjct: 26 WTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTLDQTIPPSEDEVDPVVVRRY 85
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
++ FG + LS+PM E DG + P ARLRN+TY++PLY+ + K++++
Sbjct: 86 ELKFGTVMLSRPMAMEGDGAATIMLPHEARLRNMTYASPLYLGIKKKIME 135
>POMBASE|SPAC4G9.08c [details] [associations]
symbol:rpc2 "DNA-directed RNA polymerase III complex
subunit Rpc2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PomBase:SPAC4G9.08c PANTHER:PTHR20856 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222962
KO:K03021 OMA:DMIMNPH EMBL:DQ156226 PIR:T38867 RefSeq:NP_593690.1
ProteinModelPortal:Q10233 DIP:DIP-29536N STRING:Q10233
EnsemblFungi:SPAC4G9.08c.1 GeneID:2543393 KEGG:spo:SPAC4G9.08c
OrthoDB:EOG4K6KC8 NextBio:20804408 Uniprot:Q10233
Length = 1165
Score = 1758 (623.9 bits), Expect = 5.2e-210, Sum P(2) = 5.2e-210
Identities = 407/1048 (38%), Positives = 584/1048 (55%)
Query: 157 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF 216
IG++P+MLRS+ C L +E ++ L ECP D GGYFI+ G+EKV++ QE++S N + V
Sbjct: 157 IGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRIIV- 215
Query: 217 KKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPI 276
+ +P K + A V S + R T + K G Y++ + +IPI
Sbjct: 216 -EAEPKKGLWQASVTS--STHERKSKTYVI-------TKNGKL--YLKHNS--VADDIPI 261
Query: 277 IIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA--FVIQNQQVALDYIGKR--- 331
++V +A+G +D++I E + + +L PS+EE I Q AL+YIG R
Sbjct: 262 VVVLKAMGLQSDQEIFELVAG--AEASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKV 319
Query: 332 GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDD 391
G R + A E+L +L H+ + KA Y G + R+L+ + DD
Sbjct: 320 NRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDD 379
Query: 392 RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK-----DVNLQFAIKAKT 446
RD+ GNKRL+LAG LL LF LF+K D++ + K + D Q + +
Sbjct: 380 RDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDH 439
Query: 447 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 506
IT G+ +L+TGNW RAGV+ VL+RL+Y S L + R+ S + K++ PR
Sbjct: 440 ITQGMVRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRS 499
Query: 507 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 566
L SQ+GM+C ++TPEG+ACGLVKNLALM +IT PI++ +G E+ IS
Sbjct: 500 LQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISGRE 559
Query: 567 I-PQATK-IFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYG 624
+ T +++NG +GI R P + V + ++ +G+ + + + I TD G
Sbjct: 560 LHSHGTYLVYLNGAILGISRYPSLFVASFRKLRRSGKISPFIGIFINTHQRAVFISTDGG 619
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 684
R RPL IV+ ++ + I L++ + G+ D + +G
Sbjct: 620 RICRPLIIVQNGLPKVESKHIRLLKEGK----WGFEDFLKQGLVEYVDVNEE-------- 667
Query: 685 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
ND + + ++ + DT TH EI P ILG A +IP+P HNQSPRNTYQ AMGKQA+G
Sbjct: 668 -NDSLIS-VYERDITPDT-THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG 724
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
N R+DTL Y++ YPQ+P+V T+ +E + + +LPAG NA VAI YSGY+ ED++
Sbjct: 725 AIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDAL 784
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
++N+SSIDRGF R F + +K + G P R G + ++DDGLA
Sbjct: 785 VLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDRIGDPQRDPETGEVVWKHGVVEDDGLA 844
Query: 865 PPGTRVSGEDVIIGKTTP-------ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLL 917
G RV + + K TP I+ Q S Y + ++ + E G +D+V+L
Sbjct: 845 GVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGY--KATPMTYKAPEPGYIDKVML 902
Query: 918 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
TT +KV +R R P++GDKFSSRHGQKG G+ QEDMP+ +GI PDII+NP
Sbjct: 903 TTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNP 962
Query: 978 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1037
H PSRMT+G++IE + GKV G T F V++ S+ L + GY G + + +
Sbjct: 963 HGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFGGTKVEDASRILVEHGYNYSGKDMLTS 1022
Query: 1038 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1097
G TG L A IF+GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEME
Sbjct: 1023 GITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 1082
Query: 1098 RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVH 1157
RDC+IA+GAS L ERL SDA V VC CGL+ C C++ ++V++
Sbjct: 1083 RDCLIAYGASQLLLERLMISSDACDVDVCGQCGLLGYKGW------CNSCQSTREVVKMT 1136
Query: 1158 IPYACKLLFQELMAMAIAPRMLTKEDTK 1185
IPYA KLLFQEL++M I PR+ +++ K
Sbjct: 1137 IPYAAKLLFQELLSMNIVPRLALEDEFK 1164
Score = 295 (108.9 bits), Expect = 5.2e-210, Sum P(2) = 5.2e-210
Identities = 70/204 (34%), Positives = 114/204 (55%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q LDS++ F+ D++++ Q N SD Y
Sbjct: 51 WQLLPAFLKVKGLVKQHLDSYNYFV------------DVDLKKIVQANEKVTSDVEPWFY 98
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ + I + P+ T++D A++ P RLR+LTY A +YVD+ G++V
Sbjct: 99 -LKYLDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYT------RGKQVVR 151
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
++ V IG++P+MLRS+ C L +E ++ L ECP D GGYFI+ G+EKV++ QE++
Sbjct: 152 RRN---VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQL 208
Query: 209 STNHVYVFKKRQPNKYAYVAEVRS 232
S N + V + +P K + A V S
Sbjct: 209 SKNRIIV--EAEPKKGLWQASVTS 230
>WB|WBGene00017300 [details] [associations]
symbol:rpc-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 EMBL:FO081001 HSSP:P08518 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH PIR:T16011 RefSeq:NP_498192.2 ProteinModelPortal:Q27492
STRING:Q27492 PaxDb:Q27492 EnsemblMetazoa:F09F7.3.1
EnsemblMetazoa:F09F7.3.2 GeneID:175767 KEGG:cel:CELE_F09F7.3
UCSC:F09F7.3.1 CTD:175767 WormBase:F09F7.3 InParanoid:Q27492
NextBio:889574 Uniprot:Q27492
Length = 1154
Score = 1746 (619.7 bits), Expect = 7.2e-191, Sum P(2) = 7.2e-191
Identities = 424/1148 (36%), Positives = 619/1148 (53%)
Query: 62 DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETAT-LFPKAARLR 120
D EIR N SD Y + + I + KP E T + P+ RLR
Sbjct: 50 DHFVQEEIRSIMLSNQKITSDANPNFY-LKYLDIRIGKPSSEEGLNMTHDKITPQECRLR 108
Query: 121 NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 180
++TYSAP+ VD+ +G+ + V + +D + IG++PIMLRSS C L +E++L
Sbjct: 109 DMTYSAPISVDIE---YTRGN--QRVFK-KD---LIIGRMPIMLRSSKCILRDLAEEELA 159
Query: 181 ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240
+ ECPYD GGYF++ GSEKV++ QE++S N + V R +K + S +E +++
Sbjct: 160 RVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMV--GRNSSKELQCEVLSSTSERKSKT 217
Query: 241 PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ 300
TM KG S ++ + T ++P+ I+F+A+G +D DI+ I ++
Sbjct: 218 YVTM---------KKGKYSVRHNQLT-----DDVPVSIIFKAMGVESDFDIVSTIGHE-- 261
Query: 301 DTQMMELLRPSLEEAFV--IQNQQVALDYIGKR-------------GATVGVTRDKRIKY 345
+ + +LEE+ + QQ AL Y+ + G +V V +
Sbjct: 262 -EKYVSAFAQTLEESINAGVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTPPKEHE 320
Query: 346 AKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 405
A + L M+ H+ D KA Y G + RL+ LG DDRD YGNKRL+LAG
Sbjct: 321 AVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELGENGLDDRDFYGNKRLELAGS 380
Query: 406 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQA 463
LL LF +F++ +++ + L ++ IT+ + +++TGNW
Sbjct: 381 LLSLLFEDVFKRFNSELKRIADNALMKTMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIK 440
Query: 464 NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 523
R GV+QVL+RL+Y S L + R+NS + K++ PR L SQWGM+CP++TPEG
Sbjct: 441 RFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 500
Query: 524 QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVG 581
+ACGLVKNLAL+ +IT S P+L L G E+ + + + P+ T IF+NG +G
Sbjct: 501 EACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIG 560
Query: 582 IHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK 641
DPE +VK ++ V V R + + + I +D GR RP IV+ ++
Sbjct: 561 TAVDPERVVKAVRDLRRSGLLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKNGTPMLT 620
Query: 642 KRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYAD 701
+ + L++ + + D V G ND + A ++ E +
Sbjct: 621 QAHVQELKEGKMI----FEDFVDDGIVEYLDVNEM---------NDALIA-VYGREIGPE 666
Query: 702 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
T TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N Q R+D++ Y+L
Sbjct: 667 T-THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLL 725
Query: 762 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
YPQ+PLV ++ +E +F +LPAG N I+A+ YSGY+ ED++++N++S+DRG+ R L +
Sbjct: 726 CYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVY 785
Query: 822 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
+ + KK + P + LD +G+ G R+ + II K
Sbjct: 786 KHVKGTAKKYPNQTFDRLLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHM 845
Query: 882 PISQDEAQ----------GQASRYTR-RDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 930
P+ E+ G A R +D SI+ + ++VLLT N D KV
Sbjct: 846 PVVSGESGPGASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVL 905
Query: 931 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 990
+R R P++GDKFSSRHGQKG G+ QEDMP+ G+ PD+I+NPH PSRMT+G+L+
Sbjct: 906 LRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLM 965
Query: 991 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 1050
E + GK G T F V ++ + L CGY G + + +G TG+ L+A I+
Sbjct: 966 ELLSGKAGVVNGTYHYGTAFGGDQVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYF 1025
Query: 1051 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFL 1110
GP YYQ+LKHMV DK+H+R RGP LTRQP EGRSR+GGLR GEMERDC+IA+GAS L
Sbjct: 1026 GPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLL 1085
Query: 1111 KERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM 1170
ERL SD ++V VC CG+I C+ C++ + + IPYACKLLFQEL
Sbjct: 1086 IERLMVSSDEFKVDVCTGCGVIGSKGW------CQKCRSSKSMANIKIPYACKLLFQELQ 1139
Query: 1171 AMAIAPRM 1178
+M I PR+
Sbjct: 1140 SMNIVPRL 1147
Score = 126 (49.4 bits), Expect = 7.2e-191, Sum P(2) = 7.2e-191
Identities = 37/117 (31%), Positives = 59/117 (50%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + +GLV+Q L SFD F+Q ++ I+ + I S NP +
Sbjct: 29 WLLVPAFLKVRGLVKQHLVSFDHFVQEEIRSIMLSNQKIT----SDANPN---------F 75
Query: 89 KISFGQIYLSKPMMTESDGETAT-LFPKAARLRNLTYSAPLYVDV-----TKRVIKK 139
+ + I + KP E T + P+ RLR++TYSAP+ VD+ +RV KK
Sbjct: 76 YLKYLDIRIGKPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQRVFKK 132
>ZFIN|ZDB-GENE-030131-2887 [details] [associations]
symbol:polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048565 "digestive tract development" evidence=IMP] [GO:0009304
"tRNA transcription" evidence=IMP] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-030131-2887
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:BX465207 IPI:IPI00505191
Ensembl:ENSDART00000091466 ArrayExpress:F1QQA2 Bgee:F1QQA2
Uniprot:F1QQA2
Length = 1129
Score = 1589 (564.4 bits), Expect = 2.5e-188, Sum P(2) = 2.5e-188
Identities = 367/928 (39%), Positives = 532/928 (57%)
Query: 273 EIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGK 330
+ PI I+F+A+G +D++I++ I + +M PSLEE Q Q AL YIG
Sbjct: 233 DAPIAIIFKAMGVESDQEIVQMIG---TEEHVMAAFAPSLEECQKAQIFTQTQALRYIGN 289
Query: 331 RGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 390
+ + + ++ A+E+L +L HV +F K Y ++ R++L A G D
Sbjct: 290 KVRRQRMWGGQ-MEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVIL-AQGDNKVD 347
Query: 391 DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTIT 448
DRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ IT
Sbjct: 348 DRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQIT 407
Query: 449 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
+G+ +++TGNW R GV+QVL+RL++ S L + R++S + K++ PR L
Sbjct: 408 NGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQ 467
Query: 509 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEIS 563
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+ EE+S
Sbjct: 468 PSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELS 527
Query: 564 PAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDY 623
P +F+NG +G+ RD + LV T +N V + ++ + + I +D
Sbjct: 528 ---YPTVFLVFLNGNILGVIRDHQKLVYTFRLMRRAGFINEFVSISTNLTDRCVYISSDG 584
Query: 624 GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXX 683
GR RP IV+ + +K + I L Q + H+ + +
Sbjct: 585 GRLCRPYIIVKNGKPAVKNKHIEELSQGYRTFEDFLHESLVE-------------YLDVN 631
Query: 684 XXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
ND A L+ DT TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAM
Sbjct: 632 EENDCNIA-LYEHMISKDT-THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAM 689
Query: 744 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
G N + R+DTL Y+L YPQ+P+V T+ +E + F +LPAG NA VA+ YSGY+ ED+
Sbjct: 690 GTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDA 749
Query: 804 VIMNQSSIDRGFFRSLFF-------RSYRDE--EKKMGTLVKEDFGRPDRSNTMGMRHGS 854
+++N++S+DRGF R L + R Y ++ +K MG ++ + +P RH
Sbjct: 750 LVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAETRKPI------WRHSI 803
Query: 855 YDKLDDDGLAPPGT-RVSGEDVIIGKTTP-ISQDEAQGQAS--RYTRRDHSISLRHSETG 910
LD DG+ PG+ +V + V++ K+ P ++Q +G A + R+ +S + +
Sbjct: 804 ---LDADGICSPGSEKVENKQVLVNKSMPTVTQTPLEGSAQPGQPQYREVPVSYKGATDS 860
Query: 911 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
+++V++++NA+ VK+ +R R P+IGDKFSSRHGQKG G+ QEDMP+ GI
Sbjct: 861 YIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGIC 920
Query: 971 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
PDII+NPH PSRMT+G+LIE + GK G+ T F V ++ + L + GY +
Sbjct: 921 PDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLIRYGYNYQ 980
Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGG
Sbjct: 981 GKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGG 1040
Query: 1091 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNK 1150
LR GEMERDC+I +GAS L ERL SDA+ V VC CGL+ + C CK+
Sbjct: 1041 LRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSS 1094
Query: 1151 TDIVQVHIPYACKLLFQELMAMAIAPRM 1178
+ + IPYACKLLFQEL +M I PR+
Sbjct: 1095 CHVSSLRIPYACKLLFQELQSMNIIPRL 1122
Score = 259 (96.2 bits), Expect = 2.5e-188, Sum P(2) = 2.5e-188
Identities = 74/230 (32%), Positives = 123/230 (53%)
Query: 66 DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
++EI+ + N SD A+ ++ + + IY+ P + ES T + P RLR++TYS
Sbjct: 52 NVEIKKIMKANEKITSD-ADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYS 110
Query: 126 APLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
AP+ VD+ +G + + + IG++PIMLRSS C L + + ++L EC
Sbjct: 111 APITVDIE---YTRG--SQRIIRNA----LPIGRMPIMLRSSNCVLTGKTPMEFSKLNEC 161
Query: 186 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
P D GGYFI+ G EKV++ QE++S N + V + R+ A V S E ++R + M
Sbjct: 162 PLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDRKGTVGASVTS--STHEKKSR--TNMI 217
Query: 246 VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 295
V K G Y++ + + PI I+F+A+G +D++I++ I
Sbjct: 218 V--------KQGRF--YLKHNT--LSEDAPIAIIFKAMGVESDQEIVQMI 255
Score = 141 (54.7 bits), Expect = 7.4e-176, Sum P(2) = 7.4e-176
Identities = 42/140 (30%), Positives = 71/140 (50%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q +DSF+ FI ++EI+ + N SD A+ ++
Sbjct: 27 WKLLPAFLKVKGLVKQHIDSFNYFI------------NVEIKKIMKANEKITSD-ADPMW 73
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHD- 142
+ + IY+ P + ES T + P RLR++TYSAP+ VD+ ++R+I+
Sbjct: 74 YLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
Query: 143 GEEVTETQDFTKVFIGKVPI 162
G + V GK P+
Sbjct: 134 GRMPIMLRSSNCVLTGKTPM 153
Score = 57 (25.1 bits), Expect = 5.6e-167, Sum P(2) = 5.6e-167
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 188 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVR 247
D YFI +K++ A EK++++ ++ + N Y + +V + + RP S R
Sbjct: 45 DSFNYFINVEIKKIMKANEKITSDADPMWYLKYLNIYVGMPDVEE-SFNVTRPVSPHECR 103
Query: 248 MLSRT-SAKGGSSGQYIRATLPYIRTEIPI 276
+ T SA +Y R + IR +PI
Sbjct: 104 LRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
>CGD|CAL0002357 [details] [associations]
symbol:orf19.5847 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 CGD:CAL0002357
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710802.1 RefSeq:XP_710813.1 STRING:Q59M52 GeneID:3647582
GeneID:3647593 KEGG:cal:CaO19.13269 KEGG:cal:CaO19.5847
Uniprot:Q59M52
Length = 1157
Score = 1703 (604.5 bits), Expect = 2.0e-186, Sum P(2) = 2.0e-186
Identities = 393/1041 (37%), Positives = 570/1041 (54%)
Query: 157 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF 216
IG++P+MLRS+ C L SE + ++ ECP D GGYF++NG+EKV++ QE++S N + V
Sbjct: 148 IGRMPVMLRSNKCMLEGMSEATMAQVEECPLDPGGYFVVNGTEKVILVQEQLSKNRIIV- 206
Query: 217 KKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPI 276
+ K A V S + R T + + K S I +IPI
Sbjct: 207 -EADEKKGIVQASVTS--STHERKSKTYVITKNDKIYLKHNS-----------ISEDIPI 252
Query: 277 IIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGKRGAT 334
+I+ +A G V+D +IL+ +C D+ +L + EEA ++ QQ AL Y+GKR T
Sbjct: 253 VIILKAAGIVSDLEILQLVCGS--DSNYQDLFVVNFEEAARLEVFTQQQALYYVGKRVKT 310
Query: 335 V---GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDD 391
+ G + +++ E + ++ H+ D +KA Y + R+++ + DD
Sbjct: 311 IRRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDD 370
Query: 392 RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK-----DVNLQFAIKAKT 446
RD+ GNKRL+LAG L+ LF LF+K D +A + K + D L I +
Sbjct: 371 RDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNN 430
Query: 447 ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 506
IT GL +++TGNW RAGV+ VL+RL+Y S L + R++S + K++ PR
Sbjct: 431 ITMGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRA 490
Query: 507 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 566
L SQ+GM+C A+TPEG+ACGLVKNLALM +IT P+ + G E + A
Sbjct: 491 LQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPVKKLCIALGCEPIFALDSAT 550
Query: 567 IPQATK--IFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYG 624
+ +++NG +G R P V V+ + + + + + I TD G
Sbjct: 551 LHVDGNFGVYLNGTLIGTTRFPVKFVHDFRHLRRVGKVSAFISIYTNTHHQAVHIATDGG 610
Query: 625 RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXX 684
R RPL IVE + + + L +E D D + G
Sbjct: 611 RICRPLIIVENGKSKVTAEHLAKLINQEWSFD----DFLTHGLVEYLDVNEENDSLIALY 666
Query: 685 XNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
+D+ +P TH EI P +LG A +IP+P HNQSPRNTYQ AMGKQA+G
Sbjct: 667 EDDITA---NP----GAIVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG 719
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
N R+DTL Y + YPQ+P+V T+ +E + + +LPAG NA VA+ YSGY+ ED++
Sbjct: 720 AIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIEYDKLPAGQNATVAVMSYSGYDIEDAL 779
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG--RPDRSNTMGMRHGSYDKLDDDG 862
++N++S+DRGF R R + KK ++ R D +N +H + L DG
Sbjct: 780 VLNKASLDRGFGRCQVVRKNTVQLKKYPNHTQDILAGMRVDENNKPIFQHQA---LGPDG 836
Query: 863 LAPPGTRVSGEDVIIGKTTPISQDEA-----QGQASRYTRRDHSISLRHSETGMVDQVLL 917
L G+R+ V K P + ++ Q Q + + R+ + E +DQV++
Sbjct: 837 LGEVGSRIFNGQVFANKCVPTNSGDSTLGAQQEQRAAESHREAPAFYKGPEPSYIDQVMM 896
Query: 918 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
+ + + +KV +R R P++GDKFSSRHGQKG G+ QED+P+ GI+PDII+NP
Sbjct: 897 SVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDSGISPDIIMNP 956
Query: 978 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1037
H PSRMT+G++IE I GK G T F ++++SK L + G+ G + +Y+
Sbjct: 957 HGFPSRMTVGKMIELISGKAGVLNGSLEYGTCFGGSKLEDMSKILIEKGFSYSGKDMLYS 1016
Query: 1038 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1097
G TG L A IF GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEME
Sbjct: 1017 GITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 1076
Query: 1098 RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVH 1157
RDC+IA+GAS L ERL SDA+ V VC CGL+ NS+ C CK+ +++++
Sbjct: 1077 RDCVIAYGASQLLLERLMISSDAFEVDVCNKCGLMGY-----NSW-CTTCKSSENVIKMT 1130
Query: 1158 IPYACKLLFQELMAMAIAPRM 1178
IPYA KLLFQEL++M IAPR+
Sbjct: 1131 IPYAAKLLFQELLSMNIAPRL 1151
Score = 127 (49.8 bits), Expect = 2.0e-186, Sum P(2) = 2.0e-186
Identities = 36/104 (34%), Positives = 58/104 (55%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q LDS++ F+ +++I+ ++ ++ + S +P +F
Sbjct: 42 WNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKII-KANELVL---SDVDP----EFYVKYL 93
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
I G SKP + E L P RLR+LTYSAP+YVDV
Sbjct: 94 DIRVGHKSTSKPGVKE-----VILPPHECRLRDLTYSAPIYVDV 132
>FB|FBgn0004463 [details] [associations]
symbol:RpIII128 "RNA polymerase III 128kD subunit"
species:7227 "Drosophila melanogaster" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS;NAS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE013599 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
EMBL:X58826 EMBL:AY121645 PIR:S16894 RefSeq:NP_523706.1
UniGene:Dm.2692 ProteinModelPortal:P25167 SMR:P25167 IntAct:P25167
MINT:MINT-285299 STRING:P25167 PaxDb:P25167
EnsemblMetazoa:FBtr0087977 GeneID:36289 KEGG:dme:Dmel_CG8344
CTD:36289 FlyBase:FBgn0004463 GeneTree:ENSGT00690000102214
InParanoid:P25167 OMA:DMIMNPH OrthoDB:EOG4C2FRC PhylomeDB:P25167
ChiTaRS:RpIII128 GenomeRNAi:36289 NextBio:797763 Bgee:P25167
GermOnline:CG8344 Uniprot:P25167
Length = 1137
Score = 1610 (571.8 bits), Expect = 1.1e-185, Sum P(2) = 1.1e-185
Identities = 356/918 (38%), Positives = 527/918 (57%)
Query: 273 EIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGK 330
+IPI+++F+ALG V+D++I I D ++ SL +A+ ++ QQ AL+Y+G
Sbjct: 240 DIPIVVIFKALGVVSDQEIQSLIGID---SKSQNRFGASLIDAYNLKVFTQQRALEYMGS 296
Query: 331 RGATV---GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRR 387
+ T + A+E+L +L HV +F KA Y ++ R++ L +
Sbjct: 297 KLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 356
Query: 388 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAK 445
DDRD+YGNKRL+LAG LL +F LF+++ +++ K + K ++A
Sbjct: 357 LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAA 416
Query: 446 TITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
IT+GL+ ++++GNW RAGV+QVL+RL+Y S L + R+NS + K++ PR
Sbjct: 417 QITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPR 476
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS-- 563
L SQWGM+CP++TPEG+ACGLVKNLALM +IT P++ G E+ E+S
Sbjct: 477 SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGN 536
Query: 564 PAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDY 623
P P +F+NG +G+ + + LV+ + + V V + + I+TD
Sbjct: 537 PINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDG 596
Query: 624 GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXX 683
GR RP IVE +R L+K+ + L + D D + G
Sbjct: 597 GRLCRPYVIVENRRPLVKQHHLDELNRGIRKFD----DFLLDGLIEYLDVNEE------- 645
Query: 684 XXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
ND A E+ D TH EI P +LGVCA ++P+P HNQSPRNTYQ AMGKQAM
Sbjct: 646 --NDSFIA--WNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAM 701
Query: 744 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
G+ N + R+D+L Y L YP P+V ++ +E +F +LPAG NA VA+ YSGY+ ED+
Sbjct: 702 GMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDA 761
Query: 804 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
+I+N++SIDRG+ R L +++ + K+ + P + +D LD DG+
Sbjct: 762 LILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGI 821
Query: 864 APPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
PG +V + ++I K P S + QGQ+++ IS + E +++V+++ NA
Sbjct: 822 VAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSANA 881
Query: 922 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
+ +K+ +R RIP+IGDKFSSRHGQKG G+ QEDMP+ GI PD+I+NPH P
Sbjct: 882 EEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFP 941
Query: 982 SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
SRMT+G+ +E + GK GK T F V++I L + G+ G + Y+G TG
Sbjct: 942 SRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITG 1001
Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
L A I+ GP YYQ+LKHMV DK+H+R RGP +LTRQP +GRSR+GGLR GEMERDC+
Sbjct: 1002 TPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCL 1061
Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
I++GAS + ERL SDA+ V VC CG +A + C C++ ++ ++ +PYA
Sbjct: 1062 ISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSW------CHFCQSSANVSKISMPYA 1115
Query: 1162 CKLLFQELMAMAIAPRML 1179
CKLLFQEL +M + P+M+
Sbjct: 1116 CKLLFQELTSMNVVPKMI 1133
Score = 213 (80.0 bits), Expect = 1.1e-185, Sum P(2) = 1.1e-185
Identities = 46/128 (35%), Positives = 73/128 (57%)
Query: 84 AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDG 143
A+ ++ + + + + KP + + T P RLR+ TYSAP+ VD+ +G
Sbjct: 77 ADPLFYLKYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIE---YTRG--- 130
Query: 144 EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLI 203
T+ + IG++P+MLR S C L SE +L++L ECP D GGYF++ G EKV++
Sbjct: 131 ---TQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVIL 187
Query: 204 AQEKMSTN 211
QE++S N
Sbjct: 188 IQEQLSWN 195
Score = 120 (47.3 bits), Expect = 7.4e-176, Sum P(2) = 7.4e-176
Identities = 29/104 (27%), Positives = 54/104 (51%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q +DSF+ FI +++IV + + + A+ ++
Sbjct: 35 WKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELV-------------TSGADPLF 81
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
+ + + + KP + + T P RLR+ TYSAP+ VD+
Sbjct: 82 YLKYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDI 125
>TAIR|locus:2153323 [details] [associations]
symbol:NRPC2 "nuclear RNA polymerase C2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002688 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03021 OMA:DMIMNPH IPI:IPI00530040 RefSeq:NP_199327.4
UniGene:At.9250 ProteinModelPortal:F4KD38 PRIDE:F4KD38
EnsemblPlants:AT5G45140.1 GeneID:834550 KEGG:ath:AT5G45140
Uniprot:F4KD38
Length = 1161
Score = 1709 (606.7 bits), Expect = 3.7e-183, Sum P(2) = 3.7e-183
Identities = 407/1118 (36%), Positives = 607/1118 (54%)
Query: 86 TIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE 145
+IY + F ++ + +P + + + P RL ++TY+AP++V++ + H G +
Sbjct: 78 SIY-LRFKKVRVGEPSIINVN-TVENINPHMCRLADMTYAAPIFVNI--EYVHGSH-GNK 132
Query: 146 VTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ 205
+D V IG++PIMLRS C L+ E++L LGECP D GGYFII G+EKVL+ Q
Sbjct: 133 AKSAKD--NVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQ 190
Query: 206 EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 265
E++S N + + ++ N A V M +S+ ++M + I
Sbjct: 191 EQLSKNRIIIDSDKKGNINASVTSSTEMTKSKT------VIQM----------EKEKIYL 234
Query: 266 TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV--IQNQQV 323
L +IPIIIV +A+G +D++I++ + +D + L PS+EE + Q+
Sbjct: 235 FLHRFVKKIPIIIVLKAMGMESDQEIVQMVG---RDPRFSASLLPSIEECVSEGVNTQKQ 291
Query: 324 ALDYIGKRGATVGV-TRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
ALDY+ + + T ++ A IL+ L HV D +K +Y G ++ R++
Sbjct: 292 ALDYLEAKVKKISYGTPPEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEA 351
Query: 383 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT----RDVRAYVQKCVDNGKDVNL 438
L + A DD+D+ GNKRL+L+G L+ LF LF+ + ++V + K + +
Sbjct: 352 MLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFS 411
Query: 439 QFAIKAK--TITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
Q K +I+ GL+ +L+TGN+ R G++QVL RL++ ++ + +++
Sbjct: 412 QCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSMGFITKISPQFE 471
Query: 497 REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
+ K++ PR L SQWGM+CP +TPEG++CGLVKNLALM ++T P++ + G
Sbjct: 472 KSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGV 531
Query: 557 ENFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRL 614
+ E +S + P + + +NG +G H P+ + + V V + +
Sbjct: 532 TDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQ 591
Query: 615 KELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXX 674
+ + +D GR RPL I +K +K+ + LQ D D + G
Sbjct: 592 HCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTFD----DFIRDGLIEYLDVN 647
Query: 675 XXXXXXXXXXXND-LVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
+D + E A ADT TH EI P ILGV A +IP+P HNQSPRNT
Sbjct: 648 EENNALIALYESDGTTELDEGAEAAKADT-THIEIEPFTILGVVAGLIPYPHHNQSPRNT 706
Query: 734 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
YQ AMGKQAMG N RMDTL Y+L YPQ+PL+TTR +E + + +L AG NA VA+
Sbjct: 707 YQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 766
Query: 794 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
+SGY+ ED+++MN+SS+DRGF R + + +K + P R+ G
Sbjct: 767 SFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRT---GPDAE 823
Query: 854 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA---SRYTRRDHSISLRHSETG 910
LDDDGLA PG + D+ I K P+ A S+Y ET
Sbjct: 824 KMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQYRPAREYFKGPEGETQ 883
Query: 911 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
+VD+V L ++ G +K +R R P++GDKFSSRHGQKG G+ QED P++ GI
Sbjct: 884 VVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGIC 943
Query: 971 PDIIVNPHAIPSRMTIGQLIECIMGKVAA-----HMGKE-GDATPFTDVTVDNISKALHK 1024
PD+I+NPH PSRMT+G++IE + K H G G+ + D V+ IS L +
Sbjct: 944 PDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHAD-KVETISATLVE 1002
Query: 1025 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1084
G+ G + +Y+G +G + A IF+GP YYQ+LKHMV DK+H+RG GP ++TRQP EG
Sbjct: 1003 KGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEG 1062
Query: 1085 RSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFEC 1144
+S++GGLR GEMERDC+IA+GAS + ERL SD + V VC CGL+ N K C
Sbjct: 1063 KSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKKAVC 1122
Query: 1145 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM-LTK 1181
CKN +I + +PYACKLLFQEL +M + PR+ LT+
Sbjct: 1123 TTCKNGDNIATMKLPYACKLLFQELQSMNVVPRLKLTE 1160
Score = 90 (36.7 bits), Expect = 3.7e-183, Sum P(2) = 3.7e-183
Identities = 27/102 (26%), Positives = 55/102 (53%)
Query: 31 VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKI 90
++ + + +GLV+Q LDSF+ FI + +IV ++ I S +P +IY +
Sbjct: 35 LVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRIT----STVDP--------SIY-L 81
Query: 91 SFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
F ++ + +P + + + P RL ++TY+AP++V++
Sbjct: 82 RFKKVRVGEPSIINVN-TVENINPHMCRLADMTYAAPIFVNI 122
>UNIPROTKB|E1BRJ4 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AADN02006293 EMBL:AADN02006294
EMBL:AADN02006295 IPI:IPI00580707 RefSeq:XP_416307.3
UniGene:Gga.54760 Ensembl:ENSGALT00000020649 GeneID:418071
KEGG:gga:418071 Uniprot:E1BRJ4
Length = 1132
Score = 1620 (575.3 bits), Expect = 3.9e-179, Sum P(2) = 3.9e-179
Identities = 372/968 (38%), Positives = 545/968 (56%)
Query: 231 RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIR-----TEIPIIIVFRALGF 285
R + E+ + T+ + S T K + ++ Y+R +IPI I+F+A+G
Sbjct: 188 RIIVEADRK--GTVGASVTSSTHEKKSRTNMVVKQGRFYLRHNTLSEDIPIAIIFKAMGV 245
Query: 286 VADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIG---KRGATVGVTRD 340
+D++I++ I + +M PSLEE Q Q AL YIG +R G +
Sbjct: 246 ESDQEIVQMIG---TEEHVMAAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKK 302
Query: 341 KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRL 400
+++ A+E+L +L HV +F K Y ++ R++L A G DDRD+YGNKRL
Sbjct: 303 TKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVIL-AQGENKVDDRDYYGNKRL 361
Query: 401 DLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATG 458
+LAG LL LF LF+K +++ + + + ++ IT+G+ +++TG
Sbjct: 362 ELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTG 421
Query: 459 NWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
NW R GV+QVL+RL+Y S L + R++S + K++ PR L SQWGM+CP+
Sbjct: 422 NWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPS 481
Query: 519 ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKI 573
+TPEG+ACGLVKNLALM +IT PI++ G E+ EE+S P +
Sbjct: 482 DTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELS---YPNVFLV 538
Query: 574 FVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
F+NG +G+ RD + LV T +N V + ++ + + I +D GR RP IV
Sbjct: 539 FLNGNILGVIRDHQKLVNTFRIMRRAGYINEFVSISTNLSDRCVYISSDGGRLCRPYIIV 598
Query: 634 EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARL 693
+KQ+ + + + L Q + D + +G ND A L
Sbjct: 599 KKQKPAVTNKHMEELAQGYR----NFEDFLHEGLVEYLDVNEE---------NDCNIA-L 644
Query: 694 HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
+ DT TH EI P +LGVCA +IP+P HNQSPRNTYQ AMGKQAMG N + R
Sbjct: 645 YEHTINKDT-THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNR 703
Query: 754 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
+DTL Y+L YPQKP+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DR
Sbjct: 704 IDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDR 763
Query: 814 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
GF R L +++ + K+ + P ++ LD DG+ PG +V +
Sbjct: 764 GFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENK 823
Query: 874 DVIIGKTTP-ISQDEAQGQA--SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 930
V++ K+ P ++Q +G + + +D ++ + + +++V++++NA+ +K+
Sbjct: 824 QVLVNKSMPTVTQTPLEGSSVPQQPQYKDVPVTYKGATDSYIEKVMISSNAEDAFLIKML 883
Query: 931 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 990
+R R P+IGDKFSSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LI
Sbjct: 884 LRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGFPSRMTVGKLI 943
Query: 991 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 1050
E + GK G+ T F V ++ + L + GY G + + +G TG L A I+
Sbjct: 944 ELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYF 1003
Query: 1051 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFL 1110
GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L
Sbjct: 1004 GPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLL 1063
Query: 1111 KERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM 1170
ERL SDA+ V VC CGL+ + C CK+ + + IPYACKLLFQEL
Sbjct: 1064 LERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQ 1117
Query: 1171 AMAIAPRM 1178
+M I PR+
Sbjct: 1118 SMNIIPRL 1125
Score = 721 (258.9 bits), Expect = 2.3e-68, P = 2.3e-68
Identities = 193/594 (32%), Positives = 306/594 (51%)
Query: 66 DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
++EI+ + N SD A+ ++ + + IY+ P + ES T + P RLR++TYS
Sbjct: 52 NVEIKKIMKANEKVTSD-ADPMWYLKYLNIYVGTPDVEESFNVTRPVSPHECRLRDMTYS 110
Query: 126 APLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
AP+ VD+ +G + + + IG++PIMLRSS C L + + +L EC
Sbjct: 111 APITVDIE---YTRG--SQRIIRNA----LPIGRMPIMLRSSNCVLTGKTPAEFAKLNEC 161
Query: 186 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
P D GGYFI+ G EKV++ QE++S N + V R+ A V S E ++R + M
Sbjct: 162 PLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGTVGASVTS--STHEKKSR--TNMV 217
Query: 246 VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
V K G Y+R + +IPI I+F+A+G +D++I++ I +
Sbjct: 218 V--------KQGRF--YLRHNT--LSEDIPIAIIFKAMGVESDQEIVQMIGTEEHVMAAF 265
Query: 306 ELLRPSLEEAFVIQNQQVALDYIGK--RGATVGVTRDKRIKYAKEILQKEMLPHVGTGDF 363
++A + Q K R G + +++ A+E+L +L HV +F
Sbjct: 266 APSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKKTKMEEARELLASTILTHVLVKEF 325
Query: 364 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 423
K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 326 NFRAKCIYTAVMVRRVIL-AQGENKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELK 384
Query: 424 AYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 481
+ + + ++ IT+G+ +++TGNW R GV+QVL+RL+Y
Sbjct: 385 KIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSY 444
Query: 482 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 445 ISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 504
Query: 542 SAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXX 596
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 505 MEDGPIIKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHQKLVNTFRIM 561
Query: 597 XXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q
Sbjct: 562 RRAGYINEFVSISTNLSDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQ 615
Score = 141 (54.7 bits), Expect = 3.9e-179, Sum P(2) = 3.9e-179
Identities = 42/139 (30%), Positives = 70/139 (50%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q +DSF+ FI ++EI+ + N SD A+ ++
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFI------------NVEIKKIMKANEKVTSD-ADPMW 73
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHD- 142
+ + IY+ P + ES T + P RLR++TYSAP+ VD+ ++R+I+
Sbjct: 74 YLKYLNIYVGTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
Query: 143 GEEVTETQDFTKVFIGKVP 161
G + V GK P
Sbjct: 134 GRMPIMLRSSNCVLTGKTP 152
Score = 56 (24.8 bits), Expect = 3.8e-170, Sum P(2) = 3.8e-170
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 188 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVR 247
D YFI +K++ A EK++++ ++ + N Y +V + + RP S R
Sbjct: 45 DSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGTPDVEE-SFNVTRPVSPHECR 103
Query: 248 MLSRT-SAKGGSSGQYIRATLPYIRTEIPI 276
+ T SA +Y R + IR +PI
Sbjct: 104 LRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
>UNIPROTKB|Q9NW08 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0045089 "positive regulation of innate
immune response" evidence=IMP] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0045087 EMBL:CH471054 GO:GO:0006351 GO:GO:0051607
GO:GO:0045089 Reactome:REACT_1788 GO:GO:0003899 GO:GO:0032728
GO:GO:0006386 GO:GO:0006385 EMBL:AC009721 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 Orphanet:88637 KO:K03021
OMA:DMIMNPH EMBL:AY092084 EMBL:AK001161 EMBL:AK001250 EMBL:AK122713
EMBL:AK291635 EMBL:AC078992 EMBL:AC080012 EMBL:BC046238
IPI:IPI00301346 IPI:IPI00930490 RefSeq:NP_001154180.1
RefSeq:NP_060552.4 UniGene:Hs.610795 UniGene:Hs.62696
ProteinModelPortal:Q9NW08 IntAct:Q9NW08 STRING:Q9NW08
PhosphoSite:Q9NW08 DMDM:29428029 PaxDb:Q9NW08 PRIDE:Q9NW08
Ensembl:ENST00000228347 Ensembl:ENST00000539066 GeneID:55703
KEGG:hsa:55703 UCSC:uc001tlp.3 CTD:55703 GeneCards:GC12P106751
H-InvDB:HIX0037055 HGNC:HGNC:30348 HPA:HPA036466 MIM:614366
MIM:614381 neXtProt:NX_Q9NW08 PharmGKB:PA134867680
InParanoid:Q9NW08 OrthoDB:EOG49ZXND PhylomeDB:Q9NW08
GenomeRNAi:55703 NextBio:60549 ArrayExpress:Q9NW08 Bgee:Q9NW08
CleanEx:HS_POLR3B Genevestigator:Q9NW08 GermOnline:ENSG00000013503
Uniprot:Q9NW08
Length = 1133
Score = 1616 (573.9 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
Identities = 373/951 (39%), Positives = 540/951 (56%)
Query: 250 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 309
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I + +M
Sbjct: 212 SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFG 266
Query: 310 PSLEEAFVIQ--NQQVALDYIGKRGATV----GVTRDKRIKYAKEILQKEMLPHVGTGDF 363
PSLEE Q Q AL YIG + G + +I+ A+E+L +L HV +F
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326
Query: 364 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 423
K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 327 NFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 385
Query: 424 AYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 481
+ + + ++ IT+G+ +++TGNW R GV+QVL+RL+Y
Sbjct: 386 KIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSY 445
Query: 482 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 446 ISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 505
Query: 542 SAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXX 596
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 506 MEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVNTFRLM 562
Query: 597 XXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 656
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q +
Sbjct: 563 RRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFE 622
Query: 657 GGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
H+ + + ND A L+ DT TH EI P +LGV
Sbjct: 623 DFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THLEIEPFTLLGV 667
Query: 717 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
CA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 777 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
+ F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ + K+
Sbjct: 728 IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 837 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----Q 891
+ P ++ LD DG+ PG +V + V++ K+ P ++Q +G Q
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 892 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
+Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 848 QPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 952 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R R
Sbjct: 966 GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARAR 1025
Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
GP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC CGL
Sbjct: 1026 GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGL 1085
Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM-LTK 1181
+ + C CK+ + + IPYACKLLFQEL +M I PR+ L+K
Sbjct: 1086 LGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 1130
Score = 724 (259.9 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 191/595 (32%), Positives = 306/595 (51%)
Query: 66 DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
++EI+ + N SD A+ ++ + + IY+ P + ES T + P RLR++TYS
Sbjct: 52 NVEIKKIMKANEKVTSD-ADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYS 110
Query: 126 APLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
AP+ VD+ +G + + + IG++PIMLRSS C L + + +L EC
Sbjct: 111 APITVDIE---YTRG--SQRIIRNA----LPIGRMPIMLRSSNCVLTGKTPAEFAKLNEC 161
Query: 186 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
P D GGYFI+ G EKV++ QE++S N + V R K A A V S +
Sbjct: 162 PLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR---KGAVGASVTSSTHEKK------- 211
Query: 246 VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I +
Sbjct: 212 ----SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAF 265
Query: 306 ELLRPSLEEAFVIQNQQVAL---DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
++A + Q + + ++ G + +I+ A+E+L +L HV +
Sbjct: 266 GPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKE 325
Query: 363 FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K ++
Sbjct: 326 FNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEM 384
Query: 423 RAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
+ + + + ++ IT+G+ +++TGNW R GV+QVL+RL+
Sbjct: 385 KKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLS 444
Query: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 445 YISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 504
Query: 541 GSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXX 595
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 505 DMEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVNTFRL 561
Query: 596 XXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q
Sbjct: 562 MRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQ 616
Score = 140 (54.3 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
Identities = 42/139 (30%), Positives = 70/139 (50%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q +DSF+ FI ++EI+ + N SD A+ ++
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFI------------NVEIKKIMKANEKVTSD-ADPMW 73
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHD- 142
+ + IY+ P + ES T + P RLR++TYSAP+ VD+ ++R+I+
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
Query: 143 GEEVTETQDFTKVFIGKVP 161
G + V GK P
Sbjct: 134 GRMPIMLRSSNCVLTGKTP 152
Score = 57 (25.1 bits), Expect = 7.8e-170, Sum P(2) = 7.8e-170
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 188 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVR 247
D YFI +K++ A EK++++ ++ + N Y + +V + + RP S R
Sbjct: 45 DSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEE-SFNVTRPVSPHECR 103
Query: 248 MLSRT-SAKGGSSGQYIRATLPYIRTEIPI 276
+ T SA +Y R + IR +PI
Sbjct: 104 LRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
>UNIPROTKB|E1BPX6 [details] [associations]
symbol:POLR3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:DAAA02013740 EMBL:DAAA02013741
EMBL:DAAA02013742 IPI:IPI00924128 RefSeq:NP_001179718.1
UniGene:Bt.42818 Ensembl:ENSBTAT00000038043 GeneID:540839
KEGG:bta:540839 NextBio:20878865 ArrayExpress:E1BPX6 Uniprot:E1BPX6
Length = 1133
Score = 1616 (573.9 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
Identities = 373/951 (39%), Positives = 540/951 (56%)
Query: 250 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 309
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I + +M
Sbjct: 212 SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFG 266
Query: 310 PSLEEAFVIQ--NQQVALDYIGKRGATV----GVTRDKRIKYAKEILQKEMLPHVGTGDF 363
PSLEE Q Q AL YIG + G + +I+ A+E+L +L HV +F
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326
Query: 364 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 423
K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 327 NFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 385
Query: 424 AYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 481
+ + + ++ IT+G+ +++TGNW R GV+QVL+RL+Y
Sbjct: 386 KIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSY 445
Query: 482 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 446 ISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 505
Query: 542 SAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXX 596
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 506 MEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVNTFRLM 562
Query: 597 XXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 656
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q +
Sbjct: 563 RRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFE 622
Query: 657 GGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
H+ + + ND A L+ DT TH EI P +LGV
Sbjct: 623 DFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THLEIEPFTLLGV 667
Query: 717 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
CA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 777 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
+ F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ + K+
Sbjct: 728 IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 837 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----Q 891
+ P ++ LD DG+ PG +V + V++ K+ P ++Q +G Q
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 892 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
+Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 848 QPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 952 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R R
Sbjct: 966 GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARAR 1025
Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
GP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC CGL
Sbjct: 1026 GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGL 1085
Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM-LTK 1181
+ + C CK+ + + IPYACKLLFQEL +M I PR+ L+K
Sbjct: 1086 LGYSGW------CHFCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 1130
Score = 721 (258.9 bits), Expect = 2.3e-68, P = 2.3e-68
Identities = 190/595 (31%), Positives = 308/595 (51%)
Query: 66 DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
++EI+ + N SD A+ ++ + + IY+ P + ES T + P RLR++TYS
Sbjct: 52 NVEIKKIMKANEKVTSD-ADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYS 110
Query: 126 APLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
AP+ VD+ +G + + + IG++PIMLRSS C L + + +L EC
Sbjct: 111 APITVDIE---YTRG--SQRIIRNA----LPIGRMPIMLRSSNCVLTGKTPAEFAKLNEC 161
Query: 186 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
P D GGYFI+ G EKV++ QE++S N + V R+ A V S E ++R
Sbjct: 162 PLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGTVGASVTS--STHEKKSR------ 213
Query: 246 VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
+ + K G Y+R + +IPI+I+F+A+G +D++I++ I +
Sbjct: 214 ----TNMAVKQGRF--YLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAF 265
Query: 306 ELLRPSLEEAFVIQNQQVAL---DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
++A + Q + + ++ G + +I+ A+E+L +L HV +
Sbjct: 266 GPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKE 325
Query: 363 FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K ++
Sbjct: 326 FNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEM 384
Query: 423 RAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
+ + + + ++ IT+G+ +++TGNW R GV+QVL+RL+
Sbjct: 385 KKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLS 444
Query: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 445 YISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 504
Query: 541 GSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXX 595
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 505 DMEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVNTFRL 561
Query: 596 XXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q
Sbjct: 562 MRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQ 616
Score = 140 (54.3 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
Identities = 42/139 (30%), Positives = 70/139 (50%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q +DSF+ FI ++EI+ + N SD A+ ++
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFI------------NVEIKKIMKANEKVTSD-ADPMW 73
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHD- 142
+ + IY+ P + ES T + P RLR++TYSAP+ VD+ ++R+I+
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
Query: 143 GEEVTETQDFTKVFIGKVP 161
G + V GK P
Sbjct: 134 GRMPIMLRSSNCVLTGKTP 152
Score = 57 (25.1 bits), Expect = 7.8e-170, Sum P(2) = 7.8e-170
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 188 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVR 247
D YFI +K++ A EK++++ ++ + N Y + +V + + RP S R
Sbjct: 45 DSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEE-SFNVTRPVSPHECR 103
Query: 248 MLSRT-SAKGGSSGQYIRATLPYIRTEIPI 276
+ T SA +Y R + IR +PI
Sbjct: 104 LRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
>UNIPROTKB|E2RHZ2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0045089 "positive regulation of innate
immune response" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AAEX03007377 RefSeq:XP_531760.2
Ensembl:ENSCAFT00000002941 GeneID:474531 KEGG:cfa:474531
NextBio:20850526 Uniprot:E2RHZ2
Length = 1133
Score = 1616 (573.9 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
Identities = 373/951 (39%), Positives = 540/951 (56%)
Query: 250 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 309
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I + +M
Sbjct: 212 SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFG 266
Query: 310 PSLEEAFVIQ--NQQVALDYIGKRGATV----GVTRDKRIKYAKEILQKEMLPHVGTGDF 363
PSLEE Q Q AL YIG + G + +I+ A+E+L +L HV +F
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326
Query: 364 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 423
K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 327 NFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 385
Query: 424 AYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 481
+ + + ++ IT+G+ +++TGNW R GV+QVL+RL+Y
Sbjct: 386 KIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSY 445
Query: 482 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 446 ISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 505
Query: 542 SAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXX 596
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 506 MEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVNTFRLM 562
Query: 597 XXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 656
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q +
Sbjct: 563 RRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFE 622
Query: 657 GGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
H+ + + ND A L+ DT TH EI P +LGV
Sbjct: 623 DFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THLEIEPFTLLGV 667
Query: 717 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
CA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 777 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
+ F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ + K+
Sbjct: 728 IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 837 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----Q 891
+ P ++ LD DG+ PG +V + V++ K+ P ++Q +G Q
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 892 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
+Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 848 QPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 952 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R R
Sbjct: 966 GSKVKDVCEDLVRHGYNYLGKDFVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARAR 1025
Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
GP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC CGL
Sbjct: 1026 GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGL 1085
Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM-LTK 1181
+ + C CK+ + + IPYACKLLFQEL +M I PR+ L+K
Sbjct: 1086 LGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 1130
Score = 721 (258.9 bits), Expect = 2.3e-68, P = 2.3e-68
Identities = 190/595 (31%), Positives = 308/595 (51%)
Query: 66 DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
++EI+ + N SD A+ ++ + + IY+ P + ES T + P RLR++TYS
Sbjct: 52 NVEIKKIMKANEKVTSD-ADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYS 110
Query: 126 APLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
AP+ VD+ +G + + + IG++PIMLRSS C L + + +L EC
Sbjct: 111 APITVDIE---YTRG--SQRIIRNA----LPIGRMPIMLRSSNCVLTGKTPAEFAKLNEC 161
Query: 186 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
P D GGYFI+ G EKV++ QE++S N + V R+ A V S E ++R
Sbjct: 162 PLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGTVGASVTS--STHEKKSR------ 213
Query: 246 VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
+ + K G Y+R + +IPI+I+F+A+G +D++I++ I +
Sbjct: 214 ----TNMAVKQGRF--YLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAF 265
Query: 306 ELLRPSLEEAFVIQNQQVAL---DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
++A + Q + + ++ G + +I+ A+E+L +L HV +
Sbjct: 266 GPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKE 325
Query: 363 FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K ++
Sbjct: 326 FNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEM 384
Query: 423 RAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
+ + + + ++ IT+G+ +++TGNW R GV+QVL+RL+
Sbjct: 385 KKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLS 444
Query: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 445 YISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 504
Query: 541 GSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXX 595
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 505 DMEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVNTFRL 561
Query: 596 XXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q
Sbjct: 562 MRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQ 616
Score = 140 (54.3 bits), Expect = 1.3e-178, Sum P(2) = 1.3e-178
Identities = 42/139 (30%), Positives = 70/139 (50%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q +DSF+ FI ++EI+ + N SD A+ ++
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFI------------NVEIKKIMKANEKVTSD-ADPMW 73
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHD- 142
+ + IY+ P + ES T + P RLR++TYSAP+ VD+ ++R+I+
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
Query: 143 GEEVTETQDFTKVFIGKVP 161
G + V GK P
Sbjct: 134 GRMPIMLRSSNCVLTGKTP 152
Score = 57 (25.1 bits), Expect = 7.8e-170, Sum P(2) = 7.8e-170
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 188 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVR 247
D YFI +K++ A EK++++ ++ + N Y + +V + + RP S R
Sbjct: 45 DSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEE-SFNVTRPVSPHECR 103
Query: 248 MLSRT-SAKGGSSGQYIRATLPYIRTEIPI 276
+ T SA +Y R + IR +PI
Sbjct: 104 LRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
>MGI|MGI:1917678 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0045087
"innate immune response" evidence=IEA] [GO:0045089 "positive
regulation of innate immune response" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:1917678 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND EMBL:BC044796 EMBL:BC068143 EMBL:AK039366
IPI:IPI00410871 RefSeq:NP_081699.1 UniGene:Mm.335007
ProteinModelPortal:P59470 STRING:P59470 PhosphoSite:P59470
PaxDb:P59470 PRIDE:P59470 Ensembl:ENSMUST00000077175 GeneID:70428
KEGG:mmu:70428 UCSC:uc007gku.1 InParanoid:P59470 NextBio:331603
Bgee:P59470 CleanEx:MM_POLR3B Genevestigator:P59470
GermOnline:ENSMUSG00000034453 Uniprot:P59470
Length = 1133
Score = 1613 (572.9 bits), Expect = 2.7e-178, Sum P(2) = 2.7e-178
Identities = 371/947 (39%), Positives = 537/947 (56%)
Query: 250 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 309
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I + +M
Sbjct: 212 SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFG 266
Query: 310 PSLEEAFVIQ--NQQVALDYIGKRGATV----GVTRDKRIKYAKEILQKEMLPHVGTGDF 363
PSLEE Q Q AL YIG + G + +I+ A+E+L +L HV +F
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326
Query: 364 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 423
K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 327 NFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 385
Query: 424 AYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 481
+ + + ++ IT+G+ +++TGNW R GV+QVL+RL+Y
Sbjct: 386 KIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSY 445
Query: 482 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 446 ISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 505
Query: 542 SAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXX 596
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 506 MEDGPIIKLAGNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVSTFRLM 562
Query: 597 XXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 656
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q +
Sbjct: 563 RRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFE 622
Query: 657 GGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
H+ + + ND A L+ DT TH EI P +LGV
Sbjct: 623 DFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THLEIEPFTLLGV 667
Query: 717 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
CA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 777 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
+ F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ + K+
Sbjct: 728 IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 837 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----Q 891
+ P ++ LD DG+ PG +V + V++ K+ P ++Q +G Q
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 892 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
+Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 848 QPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 952 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R R
Sbjct: 966 GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARAR 1025
Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
GP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC CGL
Sbjct: 1026 GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGL 1085
Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
+ + C CK+ + + IPYACKLLFQEL +M I PR+
Sbjct: 1086 LGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
Score = 723 (259.6 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 191/595 (32%), Positives = 306/595 (51%)
Query: 66 DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
++EI+ + N SD A+ ++ + + IY+ P + ES T + P RLR++TYS
Sbjct: 52 NVEIKKIMKANEKVTSD-ADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYS 110
Query: 126 APLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
AP+ VD+ +G + + + IG++PIMLRSS C L + + +L EC
Sbjct: 111 APITVDIE---YTRG--SQRIIRNA----LPIGRMPIMLRSSNCVLTGKTPAEFAKLNEC 161
Query: 186 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
P D GGYFI+ G EKV++ QE++S N + V R K A A V S +
Sbjct: 162 PLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR---KGAVGASVTSSTHEKK------- 211
Query: 246 VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I +
Sbjct: 212 ----SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAF 265
Query: 306 ELLRPSLEEAFVIQNQQVAL---DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
++A + Q + + ++ G + +I+ A+E+L +L HV +
Sbjct: 266 GPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKE 325
Query: 363 FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K ++
Sbjct: 326 FNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEM 384
Query: 423 RAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
+ + + + ++ IT+G+ +++TGNW R GV+QVL+RL+
Sbjct: 385 KKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLS 444
Query: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 445 YISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 504
Query: 541 GSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXX 595
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 505 DMEDGPIIKLAGNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVSTFRL 561
Query: 596 XXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q
Sbjct: 562 MRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQ 616
Score = 140 (54.3 bits), Expect = 2.7e-178, Sum P(2) = 2.7e-178
Identities = 42/139 (30%), Positives = 70/139 (50%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q +DSF+ FI ++EI+ + N SD A+ ++
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFI------------NVEIKKIMKANEKVTSD-ADPMW 73
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHD- 142
+ + IY+ P + ES T + P RLR++TYSAP+ VD+ ++R+I+
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
Query: 143 GEEVTETQDFTKVFIGKVP 161
G + V GK P
Sbjct: 134 GRMPIMLRSSNCVLTGKTP 152
Score = 57 (25.1 bits), Expect = 1.6e-169, Sum P(2) = 1.6e-169
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 188 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVR 247
D YFI +K++ A EK++++ ++ + N Y + +V + + RP S R
Sbjct: 45 DSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEE-SFNVTRPVSPHECR 103
Query: 248 MLSRT-SAKGGSSGQYIRATLPYIRTEIPI 276
+ T SA +Y R + IR +PI
Sbjct: 104 LRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
>RGD|1565311 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed) polypeptide
B" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA;ISO]
[GO:0045089 "positive regulation of innate immune response"
evidence=IEA;ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1565311 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND IPI:IPI00365981 RefSeq:NP_001178807.1
UniGene:Rn.37546 Ensembl:ENSRNOT00000009746 GeneID:362858
KEGG:rno:362858 UCSC:RGD:1565311 NextBio:681550 Uniprot:D3ZV30
Length = 1133
Score = 1613 (572.9 bits), Expect = 2.7e-178, Sum P(2) = 2.7e-178
Identities = 371/947 (39%), Positives = 537/947 (56%)
Query: 250 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 309
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I + +M
Sbjct: 212 SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFG 266
Query: 310 PSLEEAFVIQ--NQQVALDYIGKRGATV----GVTRDKRIKYAKEILQKEMLPHVGTGDF 363
PSLEE Q Q AL YIG + G + +I+ A+E+L +L HV +F
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326
Query: 364 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 423
K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 327 NFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 385
Query: 424 AYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 481
+ + + ++ IT+G+ +++TGNW R GV+QVL+RL+Y
Sbjct: 386 KIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSY 445
Query: 482 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 446 ISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 505
Query: 542 SAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXX 596
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 506 MEDGPIIKLAGNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVSTFRLM 562
Query: 597 XXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 656
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q +
Sbjct: 563 RRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFE 622
Query: 657 GGWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
H+ + + ND A L+ DT TH EI P +LGV
Sbjct: 623 DFLHESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THLEIEPFTLLGV 667
Query: 717 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
CA +IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 777 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
+ F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ + K+
Sbjct: 728 IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 837 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----Q 891
+ P ++ LD DG+ PG +V + V++ K+ P ++Q +G Q
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 892 ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
+Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 848 QPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 952 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+R R
Sbjct: 966 GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARAR 1025
Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
GP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC CGL
Sbjct: 1026 GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGL 1085
Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
+ + C CK+ + + IPYACKLLFQEL +M I PR+
Sbjct: 1086 LGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
Score = 723 (259.6 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 191/595 (32%), Positives = 306/595 (51%)
Query: 66 DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
++EI+ + N SD A+ ++ + + IY+ P + ES T + P RLR++TYS
Sbjct: 52 NVEIKKIMKANEKVTSD-ADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYS 110
Query: 126 APLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
AP+ VD+ +G + + + IG++PIMLRSS C L + + +L EC
Sbjct: 111 APITVDIE---YTRG--SQRIIRNA----LPIGRMPIMLRSSNCVLTGKTPAEFAKLNEC 161
Query: 186 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
P D GGYFI+ G EKV++ QE++S N + V R K A A V S +
Sbjct: 162 PLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR---KGAVGASVTSSTHEKK------- 211
Query: 246 VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I +
Sbjct: 212 ----SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAF 265
Query: 306 ELLRPSLEEAFVIQNQQVAL---DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
++A + Q + + ++ G + +I+ A+E+L +L HV +
Sbjct: 266 GPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKE 325
Query: 363 FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K ++
Sbjct: 326 FNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEM 384
Query: 423 RAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
+ + + + ++ IT+G+ +++TGNW R GV+QVL+RL+
Sbjct: 385 KKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLS 444
Query: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 445 YISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 504
Query: 541 GSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXX 595
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 505 DMEDGPIIKLAGNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVSTFRL 561
Query: 596 XXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q
Sbjct: 562 MRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQ 616
Score = 140 (54.3 bits), Expect = 2.7e-178, Sum P(2) = 2.7e-178
Identities = 42/139 (30%), Positives = 70/139 (50%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q +DSF+ FI ++EI+ + N SD A+ ++
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFI------------NVEIKKIMKANEKVTSD-ADPMW 73
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHD- 142
+ + IY+ P + ES T + P RLR++TYSAP+ VD+ ++R+I+
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
Query: 143 GEEVTETQDFTKVFIGKVP 161
G + V GK P
Sbjct: 134 GRMPIMLRSSNCVLTGKTP 152
Score = 57 (25.1 bits), Expect = 1.6e-169, Sum P(2) = 1.6e-169
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 188 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVR 247
D YFI +K++ A EK++++ ++ + N Y + +V + + RP S R
Sbjct: 45 DSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEE-SFNVTRPVSPHECR 103
Query: 248 MLSRT-SAKGGSSGQYIRATLPYIRTEIPI 276
+ T SA +Y R + IR +PI
Sbjct: 104 LRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
>SGD|S000005733 [details] [associations]
symbol:RET1 "Second-largest subunit of RNA polymerase III"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IGI;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005733 PANTHER:PTHR20856 EMBL:BK006948
GO:GO:0046872 GO:GO:0003677 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 EMBL:M38723 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 Reactome:REACT_87991
GO:GO:0042797 HOGENOM:HOG000222962 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH OrthoDB:EOG4K6KC8
EMBL:Z75115 PIR:S67099 RefSeq:NP_014850.1 ProteinModelPortal:P22276
DIP:DIP-997N IntAct:P22276 MINT:MINT-644049 STRING:P22276
PaxDb:P22276 PeptideAtlas:P22276 EnsemblFungi:YOR207C GeneID:854382
KEGG:sce:YOR207C CYGD:YOR207c NextBio:976523 Genevestigator:P22276
GermOnline:YOR207C Uniprot:P22276
Length = 1149
Score = 1615 (573.6 bits), Expect = 1.2e-175, Sum P(2) = 1.2e-175
Identities = 385/992 (38%), Positives = 541/992 (54%)
Query: 155 VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVY 214
V IG++PIMLRS+ C LY E + +L ECP D GGYFI+NG+EKV++ QE++S N +
Sbjct: 147 VEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRII 206
Query: 215 VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 274
V + K A V S + R T + K G Y++ I EI
Sbjct: 207 V--EADEKKGIVQASVTS--STHERKSKTYVI-------TKNGKI--YLKHNS--IAEEI 251
Query: 275 PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA--FVIQNQQVALDYIGKRG 332
PI IV +A G ++D +I++ +C + D+ ++ +LEE+ I QQ AL+YIG +
Sbjct: 252 PIAIVLKACGILSDLEIMQLVCGN--DSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKV 309
Query: 333 ATVGVTRDKRIKYAKEILQKEMLPH--VGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 390
T+ + ++ E + ++ H V DF E KA Y + R+++ + D
Sbjct: 310 KTMRRQKLTILQEGIEAIATTVIAHLTVEALDFRE--KALYIAMMTRRVVMAMYNPKMID 367
Query: 391 DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK-----DVNLQFAIKAK 445
DRD+ GNKRL+LAG L+ LF LF+K D + + K + D L + +
Sbjct: 368 DRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSN 427
Query: 446 TITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
ITSGL +++TGNW RAGV+ VL+RL+Y S L + R++S + K++ PR
Sbjct: 428 NITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPR 487
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+ I A
Sbjct: 488 ALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSA 547
Query: 566 VIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGR 625
+ +++NG +G R P V V+ + + + + I TD GR
Sbjct: 548 SLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGR 607
Query: 626 CSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXXXXXXXXXXX 685
RPL IV + +K + L E D D + G
Sbjct: 608 ICRPLIIVSDGQSRVKDIHLRKLLDGELDFD----DFLKLGLVEYLDVNEENDSYIALYE 663
Query: 686 NDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 745
D+V P + TH EI P ILG A +IP+P HNQSPRNTYQ AMGKQA+G
Sbjct: 664 KDIV-----P------SMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGA 712
Query: 746 YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 805
N R+DTL Y++ YPQ+P+V T+ +E + + +LPAG NA VA+ YSGY+ ED+++
Sbjct: 713 IAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALV 772
Query: 806 MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG--RPDRSNTMGMRHGSYDKLDDDGL 863
+N+SSIDRGF R R K+ ++ G R D + +H S L DGL
Sbjct: 773 LNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQS---LGPDGL 829
Query: 864 APPGTRVSGEDVIIGKTTPISQDEAQG--QASRYTR-RDHSISLRHSETGMVDQVLLTTN 920
G +V + I K+ P + +A + T+ R+ + R E +DQV+++ +
Sbjct: 830 GEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVS 889
Query: 921 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
+ +KV +R R P++GDKFSSRHGQKG G+ QEDMP+ +GI PDII+NPH
Sbjct: 890 DNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGF 949
Query: 981 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1040
PSRMT+G++IE I GK G T F ++++SK L G+ G + +Y+G T
Sbjct: 950 PSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGIT 1009
Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
G L A IF GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC
Sbjct: 1010 GECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1069
Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 1132
+IA+GAS L ERL SDA+ V VC+ CGL+
Sbjct: 1070 VIAYGASQLLLERLMISSDAFEVDVCDKCGLM 1101
Score = 1076 (383.8 bits), Expect = 1.1e-118, Sum P(2) = 1.1e-118
Identities = 230/496 (46%), Positives = 308/496 (62%)
Query: 696 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
E+ + TH EI P ILG A +IP+P HNQSPRNTYQ AMGKQA+G N R+D
Sbjct: 663 EKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRID 722
Query: 756 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
TL Y++ YPQ+P+V T+ +E + + +LPAG NA VA+ YSGY+ ED++++N+SSIDRGF
Sbjct: 723 TLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGF 782
Query: 816 FRSLFFRSYRDEEKKMGTLVKEDFG--RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
R R K+ ++ G R D + +H S L DGL G +V
Sbjct: 783 GRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQS---LGPDGLGEVGMKVQSG 839
Query: 874 DVIIGKTTPISQDEAQG--QASRYTR-RDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 930
+ I K+ P + +A + T+ R+ + R E +DQV+++ + + +KV
Sbjct: 840 QIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVL 899
Query: 931 VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 990
+R R P++GDKFSSRHGQKG G+ QEDMP+ +GI PDII+NPH PSRMT+G++I
Sbjct: 900 LRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMI 959
Query: 991 ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 1050
E I GK G T F ++++SK L G+ G + +Y+G TG L A IF
Sbjct: 960 ELISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFF 1019
Query: 1051 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFL 1110
GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+IA+GAS L
Sbjct: 1020 GPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLL 1079
Query: 1111 KERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM 1170
ERL SDA+ V VC+ CGL+ + C CK+ +I+++ IPYA KLLFQEL+
Sbjct: 1080 LERLMISSDAFEVDVCDKCGLMGYSGW------CTTCKSAENIIKMTIPYAAKLLFQELL 1133
Query: 1171 AMAIAPRMLTKEDTKQ 1186
+M IAPR L ED Q
Sbjct: 1134 SMNIAPR-LRLEDIFQ 1148
Score = 113 (44.8 bits), Expect = 1.2e-175, Sum P(2) = 1.2e-175
Identities = 33/104 (31%), Positives = 54/104 (51%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q LDSF+ F+ +++I+ + I SD Y
Sbjct: 45 WHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLI------------LSDVDPEFY 92
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
+ + I + K + S + T P RLR++TYSAP+YVD+
Sbjct: 93 -LKYVDIRVGKKS-SSSTKDYLTP-PHECRLRDMTYSAPIYVDI 133
>DICTYBASE|DDB_G0288449 [details] [associations]
symbol:rpc2 "RNA polymerase III, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0016539 "intein-mediated
protein splicing" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006141 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PROSITE:PS50817
PROSITE:PS50818 dictyBase:DDB_G0288449 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR
EMBL:AAFI02000111 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
InterPro:IPR003587 SMART:SM00306 GO:GO:0016539 TIGRFAMs:TIGR01443
TIGRFAMs:TIGR01445 HSSP:P08518 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 RefSeq:XP_636731.1
STRING:Q54IZ9 EnsemblProtists:DDB0216313 GeneID:8626608
KEGG:ddi:DDB_G0288449 KO:K03021 OMA:IRRIIMA Uniprot:Q54IZ9
Length = 1608
Score = 1167 (415.9 bits), Expect = 1.3e-171, Sum P(2) = 1.3e-171
Identities = 262/660 (39%), Positives = 365/660 (55%)
Query: 526 CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ--ATKIFVNGCWVGIH 583
CGLVKN ALM ++T + P+L G ++ ++ + A + +NG +GIH
Sbjct: 970 CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGIH 1029
Query: 584 RDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 643
P+ V T + V + ++ + + + D GR RP+ IV+ QR + +
Sbjct: 1030 NSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRLTQE 1089
Query: 644 DIIALQQRESPEDG--GWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYAD 701
I E +DG + D + +G ND A E A
Sbjct: 1090 HI------EDLKDGLRTFDDFIREGIIEYLDVNEE---------NDSFLA--WREAAIQP 1132
Query: 702 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
TH EI P +LG A +IP+P HNQSPRNTYQ AMGKQA+G N R+DTL Y+L
Sbjct: 1133 WTTHLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLL 1192
Query: 762 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
+ Q+PL TR ++ L++ +LPAG NA VA+ YSGY+ ED+++MN++S+DRGF R +
Sbjct: 1193 VHTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVL 1252
Query: 822 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
+ KK G + P ++ +R Y LD DG+A PG +++ K +
Sbjct: 1253 KKQVTSIKKHGNDTSDRIFPPTPND---LRQPKYGLLDSDGIAKPGELAQKGQILVNKYS 1309
Query: 882 PISQDEAQGQASRYTRRDHSISL---RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
P++ +A + S ++ +D+VLLT+ D +K+ +RS R P+
Sbjct: 1310 PLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPE 1369
Query: 939 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
+GDKFSSRHGQKG G+ QEDMP++ GI PDII+NPH PSRMTIG++IE + GK
Sbjct: 1370 LGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAG 1429
Query: 999 AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
GK G T F V+NISK L G+ G + + +G TG L IF GP +YQ+L
Sbjct: 1430 VLSGKFGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKL 1489
Query: 1059 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 1118
KHMV DK+H+R RGP LTRQP EGR+R GGLR GEMERDC+I +GAS + ERL S
Sbjct: 1490 KHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMERLMISS 1549
Query: 1119 DAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
D + V+ C++CG + C+ CK+ DI + IPYACKLLFQEL AM I PR+
Sbjct: 1550 DRFTVYACKNCGFLGYEGY------CQYCKSSVDISTIQIPYACKLLFQELQAMNIVPRL 1603
Score = 523 (189.2 bits), Expect = 1.3e-171, Sum P(2) = 1.3e-171
Identities = 125/382 (32%), Positives = 203/382 (53%)
Query: 155 VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVY 214
V IG +PIMLRSS C L + + + + LGECP D GGYFI+ G EKV++ E++S N +
Sbjct: 144 VHIGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQLSKNRII 203
Query: 215 VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 274
+ +K A V S + SRT + Y++ +I
Sbjct: 204 I---EMDSKGLPSASVTSSTHERK-----------SRTGVTLKNEKLYLKHNT--FGEDI 247
Query: 275 PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV--IQNQQVALDYIGKR- 331
P+ IV + +G D+++ + + D D + + PSLEE + ALDY+G R
Sbjct: 248 PVAIVLKGMGVETDQEMAQLVGSD--DV-FLNAITPSLEECQKCGVHTAAQALDYLGSRI 304
Query: 332 ---GATVGVTRDK-RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRR 387
GV K + + A++IL +L HV + K Y +I R+++ + +
Sbjct: 305 KVFRRPYGVQNKKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKS 364
Query: 388 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV---DNGKDVNLQFAIKA 444
DD+D+YGNKR++L+G L+ LF F+K +++ V + + + ++++L I+
Sbjct: 365 CLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAENLDLPKLIRT 424
Query: 445 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
TIT+G +++++G W R+GVSQVL+RL+Y S + + R+ S + K+A P
Sbjct: 425 DTITNGFTHAISSGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTRKVAGP 484
Query: 505 RQLHNSQWGMMCPAETPEGQAC 526
R L SQWGM+CP++TPEG+AC
Sbjct: 485 RSLQPSQWGMLCPSDTPEGEAC 506
Score = 286 (105.7 bits), Expect = 1.4e-146, Sum P(2) = 1.4e-146
Identities = 65/187 (34%), Positives = 107/187 (57%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + +GLV+Q +DSF+ FI M++IV + R ++++P Y
Sbjct: 40 WKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANE----RLTAENDPS---------Y 86
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F I + P TE + ++ L P+ RLR++TYSAP++V++ K ++
Sbjct: 87 FVRFTDINVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRNK------QIIS 140
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
+D V IG +PIMLRSS C L + + + + LGECP D GGYFI+ G EKV++ E++
Sbjct: 141 KRD---VHIGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQL 197
Query: 209 STNHVYV 215
S N + +
Sbjct: 198 SKNRIII 204
>TAIR|locus:2095233 [details] [associations]
symbol:NRPD2A "nuclear RNA polymerase D2A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IMP] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IDA;IPI] [GO:0005720 "nuclear
heterochromatin" evidence=IDA] [GO:0006306 "DNA methylation"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IDA;IPI] [GO:0030880 "RNA polymerase
complex" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0050776 "regulation of immune response"
evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050776 GO:GO:0006355 GO:GO:0050832
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 EMBL:AP000377
GO:GO:0006351 UniGene:At.37653 GO:GO:0030422 GO:GO:0006306
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 EMBL:AY862891 EMBL:AY935711 EMBL:AK176111
IPI:IPI00546801 RefSeq:NP_001189957.1 RefSeq:NP_189020.2
ProteinModelPortal:Q9LK40 SMR:Q9LK40 STRING:Q9LK40 PaxDb:Q9LK40
PRIDE:Q9LK40 EnsemblPlants:AT3G23780.1 EnsemblPlants:AT3G23780.2
GeneID:821960 KEGG:ath:AT3G23780 GeneFarm:4224 TAIR:At3g23780
InParanoid:Q9LK40 KO:K16252 OMA:CRICESA PhylomeDB:Q9LK40
ProtClustDB:CLSN2681572 Genevestigator:Q9LK40 Uniprot:Q9LK40
Length = 1172
Score = 996 (355.7 bits), Expect = 5.6e-167, Sum P(2) = 5.6e-167
Identities = 219/501 (43%), Positives = 297/501 (59%)
Query: 703 YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG-KQAMGIYVTNYQFRMDTLAYVL 761
YTHCE+ S +LGV +++PF +H+ R YQS +QA+G TN R DTL+ L
Sbjct: 686 YTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQL 745
Query: 762 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
+YPQKPL T A E L L G NAIVA+ + GYNQEDS++MN++S++RG FRS
Sbjct: 746 FYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQI 805
Query: 822 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH---GSYDKLDDDGLAPPGTRVSGEDVIIG 878
RSY+ E + E + D G H G D L+DDG G +S D++IG
Sbjct: 806 RSYKAEVDAKDS---EKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIG 862
Query: 879 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
+ T + DHSI L+H+E G+V +V+L++N +G F V +R VR P
Sbjct: 863 RCTE-------------SGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPC 909
Query: 939 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK-V 997
+GDKFSS HGQKG +G Q++ P+T++GI PDI++NPHA PSR T GQL+E + K +
Sbjct: 910 LGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGI 969
Query: 998 AAHMGKEGD----------ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1047
A + KEG ATPF+ V I++ LH+ G+ G E +YNG +G + +M
Sbjct: 970 ACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSM 1029
Query: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 1107
IF+GPT+YQRL HM +DK+ R GPV LTRQP R R GG++FGEMERDC+IAHGAS
Sbjct: 1030 IFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAS 1089
Query: 1108 HFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFE------CRGCKNKTDIVQVHIPY 1160
L ERLF SD+ ++H+C C A + +S CR C + +V+V++PY
Sbjct: 1090 ANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPY 1149
Query: 1161 ACKLLFQELMAMAIAPRMLTK 1181
KLL QEL +M I TK
Sbjct: 1150 GAKLLCQELFSMGITLNFDTK 1170
Score = 650 (233.9 bits), Expect = 5.6e-167, Sum P(2) = 5.6e-167
Identities = 189/631 (29%), Positives = 308/631 (48%)
Query: 33 SAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISF 92
+++F++ GL+ QL+S++ FI++ +Q + ++ + P + +D+ K F
Sbjct: 40 TSFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVK--F 97
Query: 93 GQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK----------GHD 142
G++ + KP D E L P ARL+N+TYSA + V+V V K G D
Sbjct: 98 GEVTVEKPTFFSDDKELEFL-PWHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQD 156
Query: 143 GEEVTETQDFTK--VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
+ D K + IG +P+M++S C + +++ + G+C +DQGGYF+I G+EK
Sbjct: 157 NYVEKKILDVKKQDILIGSIPVMVKSILCKTSEKGKENCKK-GDCAFDQGGYFVIKGAEK 215
Query: 201 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
V IAQE+M T +++ P + RS +NR VR+ A+
Sbjct: 216 VFIAQEQMCTKRLWI--SNSP----WTVSFRS-ENKRNR----FIVRLSENEKAEDYKRR 264
Query: 261 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLE------E 314
+ + T+ ++ TEIP+ ++F ALG +DK+ ++ I +D D + L S+ E
Sbjct: 265 EKV-LTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCE 323
Query: 315 AFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGY 374
AF N AL Y+ ++ + T+ + E L + P G KKA + GY
Sbjct: 324 AFRCGNN--ALTYVEQQ---IKSTKFPPAESVDECLHLYLFP--GLQSL--KKKARFLGY 374
Query: 375 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
++ LL G+R ++RD + NKR++LAG LL R+ R + +QK +
Sbjct: 375 MVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSGDG 434
Query: 435 DVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLN 492
D+ ++ + A IT+GL + +TG W R +GV L R TL LRR
Sbjct: 435 DLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTR 494
Query: 493 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
+ GK+ R H S WG +C TP+G+ CGLVKN++L+ ++ S ++E L
Sbjct: 495 QQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLE-SVVEKLF 553
Query: 553 EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDI 612
G E + + + K+ +NG WVG+ D E V ++ E+ + RD
Sbjct: 554 ACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDK 613
Query: 613 RLKELRIYTDYGRCSRPLFIVEK-QRLLIKK 642
E+RI+TD GR RPL +VE Q+L +K
Sbjct: 614 DDNEVRIFTDAGRLLRPLLVVENLQKLKQEK 644
Score = 41 (19.5 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 600 VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 646
+ VN +V V ++ +K + T G+ + VEK+ L +KK+DI+
Sbjct: 132 IKVNVQVEVFKNTVVKSDKFKT--GQDN----YVEKKILDVKKQDIL 172
Score = 41 (19.5 bits), Expect = 1.8e-59, Sum P(2) = 1.8e-59
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 1095 EMERDCMIAHGASHFLKE 1112
E E DC A G LKE
Sbjct: 665 EEEEDCNTAWGIKQLLKE 682
>ASPGD|ASPL0000054387 [details] [associations]
symbol:AN0321 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:DMIMNPH EnsemblFungi:CADANIAT00002388 Uniprot:C8VU19
Length = 1225
Score = 1539 (546.8 bits), Expect = 6.1e-158, P = 6.1e-158
Identities = 355/937 (37%), Positives = 517/937 (55%)
Query: 273 EIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGK 330
+IPI+I+ +A+G DK+++ + D E + EEA + QQ ALD+IG
Sbjct: 317 DIPIVILLKAMGIHTDKEMM--LLVAGVDKVYQEDFAINFEEAIKVGVFTQQQALDWIGS 374
Query: 331 RGATVGVTRDKRIKY-------AKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 383
R + + R K++ Y A E + ++ H+ D KA Y + R+L+
Sbjct: 375 R---IKINR-KQMSYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAK 430
Query: 384 LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA-- 441
DDRD+ GNKRL+LAG LL LF LF+K D++ + K ++ V A
Sbjct: 431 NDAALVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAWS 490
Query: 442 ---IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
+ + IT G+ +++TGNW RAGV+ VL+RL+Y + L + R++S +
Sbjct: 491 VIGMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKT 550
Query: 499 GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
K++ PR L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+
Sbjct: 551 RKVSGPRALQPSQFGMICLADTPEGEACGLVKNLALMTHITTNDEEGPIKNLIFMLGAED 610
Query: 559 FEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKE 616
+ + I P + I +NG + + R P+ + ++ V + + +
Sbjct: 611 IQTVGGKEIYAPGSYTISINGTPMALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQRA 670
Query: 617 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXXX 676
+ + TD GR RPL IVE + +KK + L+ D D +A+G
Sbjct: 671 VHVATDDGRICRPLIIVEDGKSRVKKHHLRKLRDGTMQFD----DFLAQGLVEYVDVNEE 726
Query: 677 XXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
ND + A ++ E+ DT TH EI P ILG A +IP+P HNQSPRNTYQ
Sbjct: 727 ---------NDSLIA-IY-EKDITDTTTHMEIEPFTILGAVAGLIPYPHHNQSPRNTYQC 775
Query: 737 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
AMGKQA+G +N R+D++ Y++ YPQKP+V +R +E + QLPAG NA VA+ YS
Sbjct: 776 AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGQNATVAVMSYS 835
Query: 797 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 856
GY+ ED++++N+ S+DRGF R FR Y K K+ P N +R +
Sbjct: 836 GYDIEDALVLNKGSVDRGFGRCQVFRKYVTNMKSYSNGTKDILSPPTYENDAPIR--KHA 893
Query: 857 KLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS-----ISLRHSETGM 911
L+ DGLA G +V+ +V I K+TP Q + G R S ++ + +
Sbjct: 894 LLESDGLAAVGEQVNAGEVYINKSTP-DQSMSSGMPGSDAGRPISYNPTPMTYKLPDPAY 952
Query: 912 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
+D+V+++ + + +KV R R P++GDKFSSRHGQKG G+ Q DMP+T +GI P
Sbjct: 953 IDKVMISATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINP 1012
Query: 972 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
DII+NPH PSRMT+G+++E + GK G+ G T F+ V+ +++ L G+ G
Sbjct: 1013 DIIMNPHGFPSRMTVGKMLELVAGKAGVLSGQHGYGTCFSGTPVEQMTQTLIDKGFSYGG 1072
Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
+ + +G TG L +F GP YYQ+LKHMV DK+HSR RGP LTRQP EGRSRDGGL
Sbjct: 1073 KDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGL 1132
Query: 1092 RFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKT 1151
R GEMERDC+IA+G S L ERL SD + V VCE CG + N C+ CK+
Sbjct: 1133 RLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCEQCGFMGYLNW------CQRCKSSR 1186
Query: 1152 DIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSK 1188
+V++ IPYA KLL QELM+M + R+ +++ ++K
Sbjct: 1187 SVVKMVIPYAAKLLIQELMSMNVTARLKLEDEFPETK 1223
Score = 726 (260.6 bits), Expect = 9.9e-69, P = 9.9e-69
Identities = 207/681 (30%), Positives = 332/681 (48%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q +DS++ ++ +++IV+ S I R + HN F + IY
Sbjct: 104 WNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSNTI--RSDVDHN--FYIKFTD-IY 158
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ F + +P ++ E +T+ P RLR+ TY+AP+ VD I+ G +
Sbjct: 159 -LGFPR-RADEPQDVRTEFEESTVTPHECRLRDTTYAAPIQVDF--EYIR----GRQRVR 210
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
+ V IG++P+MLRSS C L + +T L ECP D GGYFI+NG+EKV++ QE++
Sbjct: 211 RKG---VSIGRMPVMLRSSKCVLGNKTPAQMTVLNECPLDPGGYFIVNGTEKVILVQEQL 267
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLP 268
S N + V + P K A V S S N S ++ +L + Y++ +
Sbjct: 268 SKNRIIV--ETDPKKEIVQASVTS---SSNERKSKSYI-ILKKDRL-------YVKHNV- 313
Query: 269 YIRTEIPIIIVFRALGFVADKDILEHIC-YD--FQDTQMMELLRPSLEEAFVIQNQQVAL 325
+ +IPI+I+ +A+G DK+++ + D +Q+ + F QQ AL
Sbjct: 314 -LSEDIPIVILLKAMGIHTDKEMMLLVAGVDKVYQEDFAINFEEAIKVGVFT---QQQAL 369
Query: 326 DYIGKR---GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
D+IG R R ++ A E + ++ H+ D KA Y + R+L+
Sbjct: 370 DWIGSRIKINRKQMSYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMA 429
Query: 383 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA- 441
DDRD+ GNKRL+LAG LL LF LF+K D++ + K ++ V A
Sbjct: 430 KNDAALVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAW 489
Query: 442 ----IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
+ + IT G+ +++TGNW RAGV+ VL+RL+Y + L + R++S +
Sbjct: 490 SVIGMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEK 549
Query: 498 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
K++ PR L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E
Sbjct: 550 TRKVSGPRALQPSQFGMICLADTPEGEACGLVKNLALMTHITTNDEEGPIKNLIFMLGAE 609
Query: 558 NFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLK 615
+ + + I P + I +NG + + R P+ + ++ V + + +
Sbjct: 610 DIQTVGGKEIYAPGSYTISINGTPMALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQR 669
Query: 616 ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXXXXXXXX 675
+ + TD GR RPL IVE + +KK + L+ D D +A+G
Sbjct: 670 AVHVATDDGRICRPLIIVEDGKSRVKKHHLRKLRDGTMQFD----DFLAQGLVEYVDVNE 725
Query: 676 XXXXXXXXXXNDLVQARLHPE 696
D+ H E
Sbjct: 726 ENDSLIAIYEKDITDTTTHME 746
>GENEDB_PFALCIPARUM|PFL0330c [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase III
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE014188 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA
RefSeq:XP_001350475.1 ProteinModelPortal:Q8I5X9
EnsemblProtists:PFL0330c:mRNA GeneID:811119 KEGG:pfa:PFL0330c
EuPathDB:PlasmoDB:PF3D7_1206600 ProtClustDB:CLSZ2444941
Uniprot:Q8I5X9
Length = 1450
Score = 750 (269.1 bits), Expect = 1.2e-152, Sum P(3) = 1.2e-152
Identities = 152/371 (40%), Positives = 221/371 (59%)
Query: 823 SYRDEEKKMGTLVKEDFGRPDRSNT-------MGMRH-GSYDKLDDDGLAPPGTRVSGED 874
SY + K+ + K+ +G + SN M + Y LD DG+A G +
Sbjct: 1085 SYNNNVSKIDNVKKDSYGHKNISNESKDDIKKMANKDIRKYHSLDMDGVASIGYLIKEGQ 1144
Query: 875 VIIGKTTPIS-QDEAQ--GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
+ + K +P + +D + G+ + + I + +D+++ T N++GL+ K+ +
Sbjct: 1145 LYVNKFSPKNIKDHVKDIGKVDINDFKINEIKYKSVYPSYIDKIIFTENSEGLKLYKIIM 1204
Query: 932 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
R R+P++GDKFSSRHGQKG VG+ QEDMP+T GI PD+I+NPH PSRMT+G+L+E
Sbjct: 1205 RQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLE 1264
Query: 992 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
+ K A G+ + F+ + I++ L + G+ E +Y+G TG L IF+G
Sbjct: 1265 LVASKAAVMDGEYKYGSIFSGTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMG 1324
Query: 1052 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 1111
P YYQ+LKHMV DKIH+R RGP Q+LTRQP EGRS++GGLR GEMERDC+IA+G S+ L
Sbjct: 1325 PIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLL 1384
Query: 1112 ERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 1171
ERL SD V++CE CG++ C CK + + +PYACKLLFQEL
Sbjct: 1385 ERLMLSSDVCNVYICEDCGMMGY------DLYCTFCKKCDKNIVIQMPYACKLLFQELQT 1438
Query: 1172 MAIAPRMLTKE 1182
M + P+++ KE
Sbjct: 1439 MNVFPKIIVKE 1449
Score = 725 (260.3 bits), Expect = 1.2e-152, Sum P(3) = 1.2e-152
Identities = 183/521 (35%), Positives = 285/521 (54%)
Query: 339 RDKRIKYAKEILQ-------KEMLPHVGTGDFCETK-KAYYFGYIIHRLLLCALGRRAED 390
++K++K K+I++ + +L H+ + + KA +I R+L A + D
Sbjct: 522 KEKQVKNEKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEID 581
Query: 391 DRDHYGNKRLDLAGPLLGGLFRMLFRK--------LTRDVRAYVQ-----KCVDNGKDVN 437
D+D+YGNKRL+LAG L+ LF L+++ + + + Y+Q K G ++N
Sbjct: 582 DKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMN 641
Query: 438 LQFA-----IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
+ + IT G++ +++TGNW ++GVSQVL+RL++ + + + RLN
Sbjct: 642 DNYPDVFRNLPKDIITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLN 701
Query: 493 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP-ILEFL 551
S + K++ PR L SQWG++CP +TPEG++CGLVKNLALM ++T + ++E L
Sbjct: 702 SQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEIL 761
Query: 552 EEWGTENFEEISPAVIPQATKIFV--NGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVV 609
G E+ + ++ I + FV NG +G+H+ P+ ++ + V +
Sbjct: 762 YTLGVEDSDSLTGEEIYKEGVFFVILNGILLGVHKRPQKFMQRIRYLRRYGKIGQFVSIY 821
Query: 610 RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXX 669
+ + I TD GR RPL I+E + + + I AL+ + DL+
Sbjct: 822 DNFLHNAIYISTDGGRLCRPLIIIENGKSKLLPQHIKALENGTI----NFFDLLKSSVIE 877
Query: 670 XXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 729
N+L+ A L+ + T TH EI P ILGV A +IP+P+HNQS
Sbjct: 878 WIDVNEQ---------NNLLIA-LNESDISLST-THLEIDPLTILGVVAGLIPYPNHNQS 926
Query: 730 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
PRNTYQ AMGKQA+G N R DTL Y+L YPQKPLV ++ +E ++F +LPAG NAI
Sbjct: 927 PRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAI 986
Query: 790 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
VA+ + GY+ ED+++MN+SSIDRGF R + R + E KK
Sbjct: 987 VAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVELKK 1027
Score = 563 (203.2 bits), Expect = 1.4e-135, Sum P(3) = 1.4e-135
Identities = 160/494 (32%), Positives = 268/494 (54%)
Query: 80 QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
+SD E Y + F I + P + E+ ET L P+ R R+LTYSAP+YVDV +K
Sbjct: 284 KSDIDEHFY-VEFLDITVGTPSVEENMIETK-LTPQICRQRDLTYSAPIYVDV--EYVK- 338
Query: 140 GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
G + T++ V IG++P+MLRS C L SE++L +LGECPYD GGYFI+ G+E
Sbjct: 339 ---GNSII-TKN--NVEIGRLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTE 392
Query: 200 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
+VL+ QE++S N + V + N A + + AES++R V ++ K S
Sbjct: 393 RVLLMQEQLSKNRIIVEMDIKHNICATITS--TTAESKSR---CAIVYKNNKLYLKHNS- 446
Query: 260 GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY--DFQD---TQMMELLRPSLE- 313
+I +I + I+ RA+G+ +D++I + I ++ + + EL +++
Sbjct: 447 ---------FIE-DIGVCIILRAMGYESDQEIFQMIGSHKNYVNGILLSLYELYNENIKT 496
Query: 314 --EAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQ-------KEMLPHVGTGDFC 364
+A + +++ + K ++K++K K+I++ + +L H+
Sbjct: 497 NLDALLYIGKKIRPRLLAK--GFFSSMKEKQVKNEKDIIEEGLDFLSRVLLSHIQQKSKY 554
Query: 365 ETK-KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRK------ 417
+ + KA +I R+L A + DD+D+YGNKRL+LAG L+ LF L+++
Sbjct: 555 DFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLK 614
Query: 418 --LTRDVRAYVQ-----KCVDNGKDVNLQFA-----IKAKTITSGLKYSLATGNWGQANA 465
+ + + Y+Q K G ++N + + IT G++ +++TGNW
Sbjct: 615 KQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIITRGMQTAISTGNWNIKRF 674
Query: 466 AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQA 525
++GVSQVL+RL++ + + + RLNS + K++ PR L SQWG++CP +TPEG++
Sbjct: 675 KMEKSGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGES 734
Query: 526 CGLVKNLALMVYIT 539
CGLVKNLALM ++T
Sbjct: 735 CGLVKNLALMTHVT 748
Score = 142 (55.0 bits), Expect = 1.2e-152, Sum P(3) = 1.2e-152
Identities = 37/104 (35%), Positives = 60/104 (57%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ AY + KGLV+Q ++S++ FI+ ++ I++ + + I+ SD E Y
Sbjct: 243 WKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIK----------SDIDEHFY 292
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
+ F I + P + E+ ET L P+ R R+LTYSAP+YVDV
Sbjct: 293 -VEFLDITVGTPSVEENMIETK-LTPQICRQRDLTYSAPIYVDV 334
>UNIPROTKB|Q8I5X9 [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014188 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA RefSeq:XP_001350475.1
ProteinModelPortal:Q8I5X9 EnsemblProtists:PFL0330c:mRNA
GeneID:811119 KEGG:pfa:PFL0330c EuPathDB:PlasmoDB:PF3D7_1206600
ProtClustDB:CLSZ2444941 Uniprot:Q8I5X9
Length = 1450
Score = 750 (269.1 bits), Expect = 1.2e-152, Sum P(3) = 1.2e-152
Identities = 152/371 (40%), Positives = 221/371 (59%)
Query: 823 SYRDEEKKMGTLVKEDFGRPDRSNT-------MGMRH-GSYDKLDDDGLAPPGTRVSGED 874
SY + K+ + K+ +G + SN M + Y LD DG+A G +
Sbjct: 1085 SYNNNVSKIDNVKKDSYGHKNISNESKDDIKKMANKDIRKYHSLDMDGVASIGYLIKEGQ 1144
Query: 875 VIIGKTTPIS-QDEAQ--GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
+ + K +P + +D + G+ + + I + +D+++ T N++GL+ K+ +
Sbjct: 1145 LYVNKFSPKNIKDHVKDIGKVDINDFKINEIKYKSVYPSYIDKIIFTENSEGLKLYKIIM 1204
Query: 932 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
R R+P++GDKFSSRHGQKG VG+ QEDMP+T GI PD+I+NPH PSRMT+G+L+E
Sbjct: 1205 RQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLE 1264
Query: 992 CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
+ K A G+ + F+ + I++ L + G+ E +Y+G TG L IF+G
Sbjct: 1265 LVASKAAVMDGEYKYGSIFSGTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMG 1324
Query: 1052 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 1111
P YYQ+LKHMV DKIH+R RGP Q+LTRQP EGRS++GGLR GEMERDC+IA+G S+ L
Sbjct: 1325 PIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLL 1384
Query: 1112 ERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 1171
ERL SD V++CE CG++ C CK + + +PYACKLLFQEL
Sbjct: 1385 ERLMLSSDVCNVYICEDCGMMGY------DLYCTFCKKCDKNIVIQMPYACKLLFQELQT 1438
Query: 1172 MAIAPRMLTKE 1182
M + P+++ KE
Sbjct: 1439 MNVFPKIIVKE 1449
Score = 725 (260.3 bits), Expect = 1.2e-152, Sum P(3) = 1.2e-152
Identities = 183/521 (35%), Positives = 285/521 (54%)
Query: 339 RDKRIKYAKEILQ-------KEMLPHVGTGDFCETK-KAYYFGYIIHRLLLCALGRRAED 390
++K++K K+I++ + +L H+ + + KA +I R+L A + D
Sbjct: 522 KEKQVKNEKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEID 581
Query: 391 DRDHYGNKRLDLAGPLLGGLFRMLFRK--------LTRDVRAYVQ-----KCVDNGKDVN 437
D+D+YGNKRL+LAG L+ LF L+++ + + + Y+Q K G ++N
Sbjct: 582 DKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMN 641
Query: 438 LQFA-----IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
+ + IT G++ +++TGNW ++GVSQVL+RL++ + + + RLN
Sbjct: 642 DNYPDVFRNLPKDIITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLN 701
Query: 493 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP-ILEFL 551
S + K++ PR L SQWG++CP +TPEG++CGLVKNLALM ++T + ++E L
Sbjct: 702 SQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEIL 761
Query: 552 EEWGTENFEEISPAVIPQATKIFV--NGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVV 609
G E+ + ++ I + FV NG +G+H+ P+ ++ + V +
Sbjct: 762 YTLGVEDSDSLTGEEIYKEGVFFVILNGILLGVHKRPQKFMQRIRYLRRYGKIGQFVSIY 821
Query: 610 RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFXX 669
+ + I TD GR RPL I+E + + + I AL+ + DL+
Sbjct: 822 DNFLHNAIYISTDGGRLCRPLIIIENGKSKLLPQHIKALENGTI----NFFDLLKSSVIE 877
Query: 670 XXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 729
N+L+ A L+ + T TH EI P ILGV A +IP+P+HNQS
Sbjct: 878 WIDVNEQ---------NNLLIA-LNESDISLST-THLEIDPLTILGVVAGLIPYPNHNQS 926
Query: 730 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
PRNTYQ AMGKQA+G N R DTL Y+L YPQKPLV ++ +E ++F +LPAG NAI
Sbjct: 927 PRNTYQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAI 986
Query: 790 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
VA+ + GY+ ED+++MN+SSIDRGF R + R + E KK
Sbjct: 987 VAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVELKK 1027
Score = 563 (203.2 bits), Expect = 1.4e-135, Sum P(3) = 1.4e-135
Identities = 160/494 (32%), Positives = 268/494 (54%)
Query: 80 QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
+SD E Y + F I + P + E+ ET L P+ R R+LTYSAP+YVDV +K
Sbjct: 284 KSDIDEHFY-VEFLDITVGTPSVEENMIETK-LTPQICRQRDLTYSAPIYVDV--EYVK- 338
Query: 140 GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
G + T++ V IG++P+MLRS C L SE++L +LGECPYD GGYFI+ G+E
Sbjct: 339 ---GNSII-TKN--NVEIGRLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTE 392
Query: 200 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
+VL+ QE++S N + V + N A + + AES++R V ++ K S
Sbjct: 393 RVLLMQEQLSKNRIIVEMDIKHNICATITS--TTAESKSR---CAIVYKNNKLYLKHNS- 446
Query: 260 GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY--DFQD---TQMMELLRPSLE- 313
+I +I + I+ RA+G+ +D++I + I ++ + + EL +++
Sbjct: 447 ---------FIE-DIGVCIILRAMGYESDQEIFQMIGSHKNYVNGILLSLYELYNENIKT 496
Query: 314 --EAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQ-------KEMLPHVGTGDFC 364
+A + +++ + K ++K++K K+I++ + +L H+
Sbjct: 497 NLDALLYIGKKIRPRLLAK--GFFSSMKEKQVKNEKDIIEEGLDFLSRVLLSHIQQKSKY 554
Query: 365 ETK-KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRK------ 417
+ + KA +I R+L A + DD+D+YGNKRL+LAG L+ LF L+++
Sbjct: 555 DFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLK 614
Query: 418 --LTRDVRAYVQ-----KCVDNGKDVNLQFA-----IKAKTITSGLKYSLATGNWGQANA 465
+ + + Y+Q K G ++N + + IT G++ +++TGNW
Sbjct: 615 KQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIITRGMQTAISTGNWNIKRF 674
Query: 466 AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQA 525
++GVSQVL+RL++ + + + RLNS + K++ PR L SQWG++CP +TPEG++
Sbjct: 675 KMEKSGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGES 734
Query: 526 CGLVKNLALMVYIT 539
CGLVKNLALM ++T
Sbjct: 735 CGLVKNLALMTHVT 748
Score = 142 (55.0 bits), Expect = 1.2e-152, Sum P(3) = 1.2e-152
Identities = 37/104 (35%), Positives = 60/104 (57%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ AY + KGLV+Q ++S++ FI+ ++ I++ + + I+ SD E Y
Sbjct: 243 WKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIK----------SDIDEHFY 292
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
+ F I + P + E+ ET L P+ R R+LTYSAP+YVDV
Sbjct: 293 -VEFLDITVGTPSVEENMIETK-LTPQICRQRDLTYSAPIYVDV 334
>UNIPROTKB|F1SPQ0 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 OMA:DMIMNPH EMBL:FP565199
Ensembl:ENSSSCT00000000178 Uniprot:F1SPQ0
Length = 902
Score = 1044 (372.6 bits), Expect = 3.7e-118, Sum P(2) = 3.7e-118
Identities = 253/717 (35%), Positives = 391/717 (54%)
Query: 250 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 309
SRT+ Y+R + +IPI+I+F+A+G +D++I++ I + +M
Sbjct: 209 SRTNMAVKQGRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFG 263
Query: 310 PSLEEAFVIQ--NQQVALDYIGKRGATV----GVTRDKRIKYAKEILQKEMLPHVGTGDF 363
PSLEE Q Q AL YIG + G + +I+ A+E+L +L HV +F
Sbjct: 264 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 323
Query: 364 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 423
K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 324 NFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 382
Query: 424 AYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 481
+ + + ++ IT+G+ +++TGNW R GV+QVL+RL+Y
Sbjct: 383 KIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSY 442
Query: 482 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 443 ISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTD 502
Query: 542 SAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVKTXXXXXXX 599
PI++ G E+ + + P +F+NG +G+ RD + LV T
Sbjct: 503 MEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRA 562
Query: 600 VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q +
Sbjct: 563 GYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFL 622
Query: 660 HDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
H+ + + ND A L+ DT TH EI P +LGVCA
Sbjct: 623 HESLVE-------------YLDVNEENDCNIA-LYEHTINKDT-THLEIEPFTLLGVCAG 667
Query: 720 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
+IP+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E + F
Sbjct: 668 LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEF 727
Query: 780 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
+LPAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ + K+ +
Sbjct: 728 EKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKV 787
Query: 840 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----QASR 894
P ++ LD DG+ PG +V + V++ K+ P ++Q +G Q +
Sbjct: 788 MGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQ 847
Query: 895 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 848 Y--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 902
Score = 721 (258.9 bits), Expect = 1.2e-72, Sum P(2) = 1.2e-72
Identities = 190/595 (31%), Positives = 308/595 (51%)
Query: 66 DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
++EI+ + N SD A+ ++ + + IY+ P + ES T + P RLR++TYS
Sbjct: 49 NVEIKKIMKANEKVTSD-ADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYS 107
Query: 126 APLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
AP+ VD+ +G + + + IG++PIMLRSS C L + + +L EC
Sbjct: 108 APITVDIE---YTRG--SQRIIRNA----LPIGRMPIMLRSSNCVLTGKTPAEFAKLNEC 158
Query: 186 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
P D GGYFI+ G EKV++ QE++S N + V R+ A V S E ++R
Sbjct: 159 PLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGTVGASVTS--STHEKKSR------ 210
Query: 246 VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
+ + K G Y+R + +IPI+I+F+A+G +D++I++ I +
Sbjct: 211 ----TNMAVKQGRF--YLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAF 262
Query: 306 ELLRPSLEEAFVIQNQQVAL---DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
++A + Q + + ++ G + +I+ A+E+L +L HV +
Sbjct: 263 GPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKE 322
Query: 363 FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
F K Y ++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K ++
Sbjct: 323 FNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEM 381
Query: 423 RAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
+ + + + ++ IT+G+ +++TGNW R GV+QVL+RL+
Sbjct: 382 KKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLS 441
Query: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
Y S L + R++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT
Sbjct: 442 YISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 501
Query: 541 GSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTXXX 595
PI++ G E+ EE+S P +F+NG +G+ RD + LV T
Sbjct: 502 DMEDGPIVKLASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVNTFRL 558
Query: 596 XXXXVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
+N V + ++ + + I +D GR RP IV+KQ+ + + + L Q
Sbjct: 559 MRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQ 613
Score = 140 (54.3 bits), Expect = 3.7e-118, Sum P(2) = 3.7e-118
Identities = 42/139 (30%), Positives = 70/139 (50%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q +DSF+ FI ++EI+ + N SD A+ ++
Sbjct: 24 WRLLPAFLKVKGLVKQHIDSFNYFI------------NVEIKKIMKANEKVTSD-ADPMW 70
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIKKGHD- 142
+ + IY+ P + ES T + P RLR++TYSAP+ VD+ ++R+I+
Sbjct: 71 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPI 130
Query: 143 GEEVTETQDFTKVFIGKVP 161
G + V GK P
Sbjct: 131 GRMPIMLRSSNCVLTGKTP 149
Score = 57 (25.1 bits), Expect = 2.1e-109, Sum P(2) = 2.1e-109
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 188 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVR 247
D YFI +K++ A EK++++ ++ + N Y + +V + + RP S R
Sbjct: 42 DSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEE-SFNVTRPVSPHECR 100
Query: 248 MLSRT-SAKGGSSGQYIRATLPYIRTEIPI 276
+ T SA +Y R + IR +PI
Sbjct: 101 LRDMTYSAPITVDIEYTRGSQRIIRNALPI 130
Score = 45 (20.9 bits), Expect = 1.2e-72, Sum P(2) = 1.2e-72
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 963 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
P+T+ G+ +I PH S Q C MGK A MG G
Sbjct: 658 PFTLLGVCAGLIPYPHHNQSPRNTYQ---CAMGKQA--MGTIG 695
>DICTYBASE|DDB_G0293560 [details] [associations]
symbol:rpa2 "RNA polymerase I, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 dictyBase:DDB_G0293560
PANTHER:PTHR20856 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 EMBL:AAFI02000218 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 RefSeq:XP_629008.1 HSSP:P08518 STRING:Q54BM1
PRIDE:Q54BM1 EnsemblProtists:DDB0216278 GeneID:8629292
KEGG:ddi:DDB_G0293560 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
ProtClustDB:CLSZ2728683 GO:GO:0032549 Gene3D:2.40.270.10
Uniprot:Q54BM1
Length = 1130
Score = 799 (286.3 bits), Expect = 2.9e-111, Sum P(2) = 2.9e-111
Identities = 190/502 (37%), Positives = 268/502 (53%)
Query: 695 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
P E TH E P+ + + A++ PF D+NQSPRN YQ M KQ MG + +Y FR
Sbjct: 642 PHEVIKGVTTHIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRT 701
Query: 755 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
D Y + QKP+V T+ P G NA++A+ +GY+ ED++I+N+S+ +RG
Sbjct: 702 DNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERG 761
Query: 815 FFR-SLFFRSYRDEEKKMGTLVKED--FGRPDRSNTMGMRHGSYDK-LDDDGLAPPGTRV 870
F S++ Y D ++ + ++ FGRP NT+ DK +D DGL G +
Sbjct: 762 FGHGSVYKNEYIDLDQGLSRFEQKKTFFGRP---NTVV---DELDKFIDTDGLPFVGRLI 815
Query: 871 S-GEDVIIGKTTPISQDEAQGQASRYTRRDHS----ISLRHSETGMVDQVLLTTNADGLR 925
GE T I + + Y ++ + + + G T + +
Sbjct: 816 KPGEPYY----TYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGA------TRDPSKIN 865
Query: 926 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 985
+ V++R R P IGDKFSSRHGQKG + + + +MP+T G+ PD+I+NP+A PSRMT
Sbjct: 866 NICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMT 925
Query: 986 IGQLIECIMGKVAAHMGKEGDATPF----TDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
IG L+E + GK A GK DAT F + +D + L K G+ G E MY+G TG
Sbjct: 926 IGMLVEILAGKAGAIHGKFQDATAFQFDENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTG 985
Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
+ IF G YYQRL+HMV DK R G V LTRQP +GR GG+RFGEMERD +
Sbjct: 986 KEFECEIFFGVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSL 1045
Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCG-LIAIANLKKNS----FECRGCKNKTDIVQV 1156
+AHGAS L +RL SD ++ VC+ CG + I + K S EC+ CK+ I +
Sbjct: 1046 LAHGASFCLNDRLMKSSDFAKIKVCKLCGSTLTIYSKKDYSNQTVSECKSCKSSDSIATI 1105
Query: 1157 HIPYACKLLFQELMAMAIAPRM 1178
IPY L EL A+ I ++
Sbjct: 1106 SIPYVFTYLVAELAAVNITMKL 1127
Score = 356 (130.4 bits), Expect = 2.9e-111, Sum P(2) = 2.9e-111
Identities = 143/542 (26%), Positives = 243/542 (44%)
Query: 37 EEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIY 96
E K L++ +DSFD F + + ++ +S + +HN Q YKI F +
Sbjct: 4 ELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYF----EHNSTQ--------YKIRFTDLK 51
Query: 97 LSKPMMTESDGETATLFPKAARLRNLTYSAP------LYVDVTKRVIKKGHDGEEVT-ET 149
LS+P + E L+P +R TY+AP LY +V + + + DG EV
Sbjct: 52 LSRPTRNIVEKEIK-LYPNESRETGTTYNAPFKGAIGLY-EVNE--MDEMDDGTEVDYNK 107
Query: 150 QDFTKVF---IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206
Q+ T F +G++PIM++S YC L S + L E E +QGGYFI+NG+EKV+
Sbjct: 108 QEPTHTFEVDLGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLV 167
Query: 207 KMSTNH-VYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 265
NH V + +K N+ + + RP + L + G ++ +++
Sbjct: 168 MTKANHPVALHRKAWTNRGPGYTK-NGITIRCVRPDRSSITNNLHYIN-DGQTTLRFL-- 223
Query: 266 TLPYIRTE--IPIIIVFRALGFVADKDILEHICY-DFQDTQMMELLRPSLEEAFV--IQN 320
Y R E +P ++ +AL +K+I E+I D ++T + + + SL E + I
Sbjct: 224 ---YRRQEFFLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINT 280
Query: 321 QQVALDYIGKR--GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
Q+ LDYIG R T IK + + + + H+ + K +I +
Sbjct: 281 QEEVLDYIGSRFRARTQFPPSFSNIKIGRWFINQFVFVHLPNYN----DKYNLLILMIQK 336
Query: 379 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN- 437
L G+ D+ D + + LAG + G + + + +++V K ++ K
Sbjct: 337 LYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGD 396
Query: 438 -LQFAIKAKTITSGLK------YSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHL 488
L A+K K + K Y LATGN ++ + +G + ++L + +SH
Sbjct: 397 KLPDALK-KVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHF 455
Query: 489 RRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
R ++ K R+L WG CP TP+G CGL+ +L+ +TV +A P
Sbjct: 456 RSIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPT 515
Query: 548 LE 549
++
Sbjct: 516 VQ 517
>CGD|CAL0002109 [details] [associations]
symbol:RPA135 species:5476 "Candida albicans" [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 CGD:CAL0002109 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000024 GO:GO:0003899
eggNOG:COG0085 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:XP_720354.1 RefSeq:XP_888689.1
STRING:Q5AFK6 GeneID:3637996 GeneID:3704205 KEGG:cal:CaO19.7062
KEGG:cal:CaO19_7062 Uniprot:Q5AFK6
Length = 1166
Score = 780 (279.6 bits), Expect = 7.9e-107, Sum P(3) = 7.9e-107
Identities = 182/469 (38%), Positives = 250/469 (53%)
Query: 695 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
PEE + ++H E P+ IL + A++ PF D NQSPRN YQ MGKQ MG T R
Sbjct: 653 PEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRS 712
Query: 755 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
D Y L Q P+V + P G+NAIVA+ Y+GY+ +D++I+N+S+ +RG
Sbjct: 713 DNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERG 772
Query: 815 FFRSLFFRSYR---DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
F +++ + + ++ G + + FG + +KLD DGL G +V
Sbjct: 773 FGYGTVYKTEKVDLSQSRRRGDPITQHFGFGSDEWPEAWK----EKLDADGLPLIGVKVE 828
Query: 872 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLT---TNADGLRFVK 928
D I+ D+ G+ T HS SE +++V L +N + +
Sbjct: 829 EGDPIVAY-----YDDTLGKTKVKTY--HS-----SEPAYIEEVKLLGDDSNEQEGQQIT 876
Query: 929 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
++ R R P IGDKFSSRHGQKG + Q DMP+T G+ PD+I+NPHA PSRMTIG
Sbjct: 877 IKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGM 936
Query: 989 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
+E + GK A G D+TP+ D D + L K GY G E MY+G TG L
Sbjct: 937 FVESLAGKAGALHGIAQDSTPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEEL 996
Query: 1045 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1104
I++G YYQRL+HMV+DK R GPV LT QP +GR R GG+R GEMERD +I H
Sbjct: 997 RCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGH 1056
Query: 1105 GASHFLKERLFDQSDAYRVHVCEHCGLI-----AIANL-KKNSFECRGC 1147
G S L++RL + SD + VC CG I ++ + S CR C
Sbjct: 1057 GTSFLLQDRLLNCSDYTQTPVCRSCGSILTTQTSVPRIGSMASIRCRRC 1105
Score = 333 (122.3 bits), Expect = 7.9e-107, Sum P(3) = 7.9e-107
Identities = 119/465 (25%), Positives = 217/465 (46%)
Query: 89 KISFGQIYLSKPMMTESDGETAT--LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 146
KI + L+KP + +D + FP R R +TY + L ++VT V +D EEV
Sbjct: 78 KIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSV----NDEEEV 133
Query: 147 TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206
+E ++ G++PIML+S+ C L + S L E E + GGYFI+NG EK++
Sbjct: 134 SEVRE-----AGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLI 188
Query: 207 KMSTNH-VYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 265
NH + + + N+ A + S RP T +L + G + ++
Sbjct: 189 VQRRNHPMAIIRPSFGNRGASYTKFGIQIRSV-RPDQTSQTNVLHYLN-DGNVTFRFSWR 246
Query: 266 TLPYIRTEIPIIIVFRALGFVADKDILEHIC-YDFQD---TQMMELLRPSLEEAFVIQNQ 321
++ +P++++ +AL D++I + I D ++ T +ELL + + + + +Q
Sbjct: 247 KNEFL---VPVVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYK-TYNLYSQ 302
Query: 322 QVALDYIGKRGATV-GVTRDKR-IKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
Q L Y+G + V G + D I+ KE+L++ +L H+ K ++I +L
Sbjct: 303 QETLAYLGDKFRVVFGASPDMSDIEVGKEVLKRIVLVHLPNN----ADKFRMLLFMIRKL 358
Query: 380 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
G A D+ D ++ + L G L G + + + ++++ +Q ++ G +N
Sbjct: 359 YSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFD 418
Query: 440 --------FAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLR 489
F+ + I L+Y L+TGN + + +G + V ++ + +SH R
Sbjct: 419 DRKYMTRVFSRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFR 478
Query: 490 RLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
++ E K R+L WG +CP TP+G CGL+ +L+
Sbjct: 479 MVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLS 523
Score = 47 (21.6 bits), Expect = 7.9e-107, Sum P(3) = 7.9e-107
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 1152 DIVQVHIPYACKLLFQELMAMAIAPR 1177
D V IP+ K L EL AM I R
Sbjct: 1135 DTTTVAIPFVLKYLDSELSAMGIKMR 1160
>UNIPROTKB|F1NLV9 [details] [associations]
symbol:F1NLV9 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0017126 "nucleologenesis"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0003677 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:AADN02041199 IPI:IPI00576768
Ensembl:ENSGALT00000014017 Uniprot:F1NLV9
Length = 1016
Score = 830 (297.2 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 200/495 (40%), Positives = 268/495 (54%)
Query: 704 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
TH E+ P IL V A++IPF DHNQSPRN YQ MGKQ MG V NY+ R D Y+L+
Sbjct: 542 THQELFPHSILSVVANLIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYLLHT 601
Query: 764 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
PQ PLV R ++ P G N++VA+ YSGY+ ED++I+N+SS +RGF +
Sbjct: 602 PQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGYDMEDAMIVNKSSWERGF-------A 654
Query: 824 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKT 880
Y K + R + G+R G +KLD DGL G+ + D
Sbjct: 655 YGSVIKMESIDLSLKANRGGDNLVFGIRPGDPNVKEKLDADGLPFVGSILQPGD------ 708
Query: 881 TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RFVK--VRVRSVRIP 937
P + T ++ ++ E G+VD + L +N G +F K + VR R P
Sbjct: 709 -PF-----YSYMNLNTGETFTVYYQNKEVGIVDNIKLCSNDRGTGKFKKACITVRVPRNP 762
Query: 938 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
+GDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG LIE + GK
Sbjct: 763 TVGDKFASRHGQKGILSQLWPVEDMPFTENGMVPDILFNPHGFPSRMTIGMLIESMAGKS 822
Query: 998 AAHMGKEGDATPFTDVTVDNISK----ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1053
AA G DATPFT ++ K L GY G E MY+G +G L A IF+G
Sbjct: 823 AALHGAYYDATPFTFTEKNSALKYFGETLVSAGYNFFGTEKMYSGISGVELEADIFVGVV 882
Query: 1054 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 1113
YYQRL+HMV DK R GP +T QP +GR+ +GG+RFGEMERD ++AHG S L +R
Sbjct: 883 YYQRLRHMVSDKFQVRTTGPRDSVTNQPIKGRNVEGGIRFGEMERDALLAHGTSFLLHDR 942
Query: 1114 LFDQSDAYRVHVCEHCGLIAIANLKK---------NSFECRGCKNKTDIVQV-HIPYACK 1163
LF SD +VC CG + L++ + C C + D +Q+ +P+ +
Sbjct: 943 LFSCSDGCEAYVCTSCGSMLSPLLQRPPPSSVASSRRYSCMLC-GRMDTIQIIPVPHVFR 1001
Query: 1164 LLFQELMAMAIAPRM 1178
EL AM I R+
Sbjct: 1002 YFLAELAAMNIKLRL 1016
Score = 240 (89.5 bits), Expect = 4.0e-106, Sum P(2) = 4.0e-106
Identities = 104/404 (25%), Positives = 172/404 (42%)
Query: 157 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV---LIAQEK----MS 209
+G VPIM++S C LY S ++L + E + GGYFIING EKV LI +
Sbjct: 19 VGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKVIRMLIMPRRNFPLAM 78
Query: 210 TNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPY 269
T H + K R P Y + + + + + M G +I +
Sbjct: 79 TRHKW--KNRGPGFTEYGVVMHCVKDEHSA------INMNLHYLENGCVMVNFIFQKELF 130
Query: 270 IRTEIPIIIVFRALGFVADKDILEHICYDFQ-DTQMM----ELLRPSLEEAFVIQNQQVA 324
+P+ +AL D I E + D + DT + E+LR ++ EA Q V
Sbjct: 131 F---LPLGFALKALVNFTDYQIFEELVKDKKNDTFYVNCVTEMLR-AVAEAGCYTQQNV- 185
Query: 325 LDYIGKR-GATVGVTRDKRIKYAKE-ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
L+Y+GK + + + A + I K + H+ T+K Y + +L
Sbjct: 186 LEYLGKSFRVKLNLPEWYSNEQAADFIFNKCICIHLTD----RTEKFYLLCMMTRKLCAF 241
Query: 383 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK-DVNLQFA 441
A G ED+ D N+ + AG L + + V+ ++K + ++N
Sbjct: 242 AKGECMEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFVLEKRTEKADININADSL 301
Query: 442 IKA----KTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPI 495
+KA +T +Y LATGN G +G+ V ++L + LSH R ++
Sbjct: 302 MKAFNMTTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGS 361
Query: 496 G-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
+ + R+L WG +CP +TP+G+ CGL+ ++ + I
Sbjct: 362 AFAQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEI 405
>POMBASE|SPBP23A10.07 [details] [associations]
symbol:rpa2 "DNA-directed RNA polymerase I complex
subunit Rpa2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISO] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISO] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PomBase:SPBP23A10.07 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
OMA:EVFAGVT GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222963 PIR:T50394 RefSeq:NP_595819.2 STRING:Q9P7X8
EnsemblFungi:SPBP23A10.07.1 GeneID:2541280 KEGG:spo:SPBP23A10.07
OrthoDB:EOG4W11N4 NextBio:20802391 Uniprot:Q9P7X8
Length = 1174
Score = 802 (287.4 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 190/471 (40%), Positives = 254/471 (53%)
Query: 695 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
P+E TH E P+ +L + A++ PF D NQSPRN YQ MGKQ MG T ++R
Sbjct: 663 PKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRT 722
Query: 755 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
D Y L Q P+V + P G NA+VA+ Y+GY+ ED++I+N+S+ +RG
Sbjct: 723 DNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERG 782
Query: 815 FFRSLFFR--SYR-DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
F ++ S+ ++++ G V FG S R KLD DGL G ++
Sbjct: 783 FGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTP---RREWLQKLDADGLPFIGIKLE 839
Query: 872 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 928
D I+ DE+ GQ + H +E G VD+V L N G + +
Sbjct: 840 DGDPIVAY-----YDESTGQ--NFIETYHG-----TEPGFVDEVRLLGNDVGDSECQQIH 887
Query: 929 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
V++R R P IGDKFSSRHGQKG + DMP+T G+ PDII+NPHA PSRMTIG
Sbjct: 888 VKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGM 947
Query: 989 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
IE + GK A G D+TPF D + L K GY G E MY+G TG+ +
Sbjct: 948 FIESLAGKAGACHGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEM 1007
Query: 1045 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1104
A I++G YYQRL+HMV DK R GP+ LTRQP +GR R GG+RFGEMERD +I H
Sbjct: 1008 KADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGH 1067
Query: 1105 GASHFLKERLFDQSDAYRVHVCEHCG-LIAI-ANLKKNSF------ECRGC 1147
G S +++RL + SD + VC CG +I+I + + N CR C
Sbjct: 1068 GTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSC 1118
Score = 283 (104.7 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 121/472 (25%), Positives = 209/472 (44%)
Query: 89 KISF--GQIYLSKPMMTESDGETAT--LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 144
KISF ++ ++KPM++ + + ++P AR R TY + L + + V + G
Sbjct: 74 KISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSV----NGGP 129
Query: 145 EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 204
+E ++ +G +PIM+RS+ C L S +L E + GGYFI+NG EK++
Sbjct: 130 RQSEMRE-----VGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRM 184
Query: 205 QEKMSTNHVYV-----FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
NH F R + Y +R + Q+ +T+ L+ G +
Sbjct: 185 LILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTL--HYLNN----GVTM 238
Query: 260 GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC-YDFQDTQMMELLRPSLE--EAF 316
++ Y+ IP +++ +AL +DK+I E I D +T + + + L +++
Sbjct: 239 FRFHWRKNEYL---IPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSY 295
Query: 317 VIQNQQVALDYIGKRGATV-GVTRDKR-IKYAKEILQKEMLPHVGTGDFCETKKAY-YFG 373
+ +Q L Y+G + V GV D ++ + +LQK +L H+ E K +
Sbjct: 296 GLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLR-----EAKDKFRLLL 350
Query: 374 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN- 432
++I +L G D+ D ++ + L G L G + + +RA + V
Sbjct: 351 FMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRS 410
Query: 433 --GKDVNLQ------FAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYA 482
G D + + F+ I + L+Y L+TGN + G + V +L +
Sbjct: 411 APGVDFSDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFY 470
Query: 483 STLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
LSH R ++ E K R+L WG MCP TP+G CGL+ +LA
Sbjct: 471 RFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLA 522
>SGD|S000006214 [details] [associations]
symbol:RPA135 "RNA polymerase I second largest subunit A135"
species:4932 "Saccharomyces cerevisiae" [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 SGD:S000006214
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 EMBL:Z71255
EMBL:U31900 EMBL:BK006949 EMBL:Z49919 GO:GO:0005736 GO:GO:0003899
GO:GO:0042790 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
HOGENOM:HOG000222963 OrthoDB:EOG4W11N4 EMBL:M62804 PIR:A39607
RefSeq:NP_015335.1 ProteinModelPortal:P22138 DIP:DIP-135N
IntAct:P22138 MINT:MINT-423299 STRING:P22138 PaxDb:P22138
PeptideAtlas:P22138 EnsemblFungi:YPR010C GeneID:856119
KEGG:sce:YPR010C CYGD:YPR010c OMA:FNLLIFM NextBio:981198
Genevestigator:P22138 GermOnline:YPR010C Uniprot:P22138
Length = 1203
Score = 775 (277.9 bits), Expect = 6.4e-103, Sum P(3) = 6.4e-103
Identities = 180/449 (40%), Positives = 241/449 (53%)
Query: 695 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
P+E + +TH E P+ IL + A++ PF D NQSPRN YQ MGKQ MG R
Sbjct: 678 PQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRS 737
Query: 755 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
D Y L Q P+V + P G NA+VA+ Y+GY+ +D++I+N+S+ +RG
Sbjct: 738 DNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERG 797
Query: 815 FFRSLFFRSYRDE---EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
F +++ + + + G + + FG N + +KLD+DGL GT V
Sbjct: 798 FGYGTMYKTEKVDLALNRNRGDPITQHFGF---GNDEWPKEW-LEKLDEDGLPYIGTYVE 853
Query: 872 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG----LRFV 927
D I D+ + T HS SE +++V L + L+ V
Sbjct: 854 EGDPICAYF-----DDTLNKTKIKTY--HS-----SEPAYIEEVNLIGDESNKFQELQTV 901
Query: 928 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
++ R R PQIGDKFSSRHGQKG + DMP++ GI PDII+NPHA PSRMTIG
Sbjct: 902 SIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIG 961
Query: 988 QLIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043
+E + GK A G D+TP+ D D + L K GY G E MY+G TG
Sbjct: 962 MFVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEE 1021
Query: 1044 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1103
L A I++G YYQRL+HMV+DK R GPV LT QP +GR R GG+R GEMERD +I
Sbjct: 1022 LRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIG 1081
Query: 1104 HGASHFLKERLFDQSDAYRVHVCEHCGLI 1132
HG S L++RL + SD + VC CG I
Sbjct: 1082 HGTSFLLQDRLLNSSDYTQASVCRECGSI 1110
Score = 311 (114.5 bits), Expect = 6.4e-103, Sum P(3) = 6.4e-103
Identities = 116/498 (23%), Positives = 230/498 (46%)
Query: 61 VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTE--SDGETATLFPKAAR 118
+ E + +P + + S + +S Q+ ++KPM + S ++P +R
Sbjct: 68 IGEKVIFDGKPLNSEDEISNSGYLGNKLSVSVEQVSIAKPMSNDGVSSAVERKVYPSESR 127
Query: 119 LRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKD 178
R +Y L + + K + G E + E +D G +P+ML+S+ C L + S +
Sbjct: 128 QRLTSYRGKLLLKL-KWSVNNGE--ENLFEVRD-----CGGLPVMLQSNRCHLNKMSPYE 179
Query: 179 LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH-VYVFKKRQPNKYA----YVAEVRSM 233
L + E + GGYFI+NG EK++ NH + + + N+ A Y ++RS+
Sbjct: 180 LVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSV 239
Query: 234 AESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293
RP T +L + G + ++ Y+ +P++++ +AL +D++I +
Sbjct: 240 -----RPDQTSQTNVLHYLN-DGQVTFRFSWRKNEYL---VPVVMILKALCHTSDREIFD 290
Query: 294 HIC-YDFQD---TQMMELLRPSLEEAFV-IQNQQVALDYIGKRGATV-GVTRDKR-IKYA 346
I D +D T +ELL ++ + +QN+ L Y+G + V + D+ ++
Sbjct: 291 GIIGNDVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVG 350
Query: 347 KEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 406
+E+L + +L H+G D + K ++I +L G + D+ D ++ + L G L
Sbjct: 351 QEVLDRIVLVHLGK-DGSQDKFRMLL-FMIRKLYSLVAGECSPDNPDATQHQEVLLGGFL 408
Query: 407 LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ---FAIKA-----KTITSGLKYSLATG 458
G + + + +++ A V+ ++ G +N + + + + I S ++Y L+TG
Sbjct: 409 YGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTG 468
Query: 459 NWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMM 515
N + + +G + V ++ + +SH R ++ + K R+L WG +
Sbjct: 469 NLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFL 528
Query: 516 CPAETPEGQACGLVKNLA 533
CP TP+G CGL+ + A
Sbjct: 529 CPVHTPDGSPCGLLNHFA 546
Score = 42 (19.8 bits), Expect = 6.4e-103, Sum P(3) = 6.4e-103
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 1156 VHIPYACKLLFQELMAMAIAPR 1177
V IP+ K L EL AM I R
Sbjct: 1176 VAIPFVLKYLDSELSAMGIRLR 1197
Score = 38 (18.4 bits), Expect = 3.0e-74, Sum P(3) = 3.0e-74
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 344 KYAKEILQKEMLPHVGT 360
K A +LQ+ + PH+G+
Sbjct: 32 KSAFPLLQEAVQPHIGS 48
>UNIPROTKB|E2REX8 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
EMBL:AAEX03010908 RefSeq:XP_003639648.1 Ensembl:ENSCAFT00000011494
GeneID:100856298 KEGG:cfa:100856298 Uniprot:E2REX8
Length = 1135
Score = 820 (293.7 bits), Expect = 6.8e-103, Sum P(2) = 6.8e-103
Identities = 200/504 (39%), Positives = 268/504 (53%)
Query: 696 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
+E A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 649 DEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSD 708
Query: 756 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 709 NKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 768
Query: 816 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 871
++S + D +K +K+ D S G++ G KLDDDGL G R+
Sbjct: 769 AHGSVYKSEFIDLSEK----IKQG----DDSLVFGVKPGDPRILQKLDDDGLPFIGARLQ 820
Query: 872 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RF--VK 928
D ++ + + + Y +++ I VD + + +N G RF V
Sbjct: 821 YGDPYYSY---LNLNTGESFVTYYKSKENCI---------VDNIKVCSNDTGNGRFKCVC 868
Query: 929 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 869 ITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGM 928
Query: 989 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
LIE + GK AA G DATPFT + ++ + L GY G E +Y+G +G L
Sbjct: 929 LIESMAGKSAALHGLCHDATPFTFSEENSALEYFGELLKAAGYNFYGTERLYSGISGIEL 988
Query: 1045 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1104
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 989 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAH 1048
Query: 1105 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1154
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 1049 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCDRSDTID 1108
Query: 1155 QVHIPYACKLLFQELMAMAIAPRM 1178
V +PY + EL AM I ++
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKL 1132
Score = 245 (91.3 bits), Expect = 6.8e-103, Sum P(2) = 6.8e-103
Identities = 120/480 (25%), Positives = 202/480 (42%)
Query: 97 LSKPMMTESD-GETATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFT 153
+S PM+ + + + ++P R R TY L D++ V I KG
Sbjct: 82 ISPPMVPKGNICKELNIYPAECRGRRSTYRGKLTADISWAVNGISKG-----------II 130
Query: 154 KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL--IAQEKMSTN 211
K F+G +PIM++S C L+ K L E E + GGYFIING EKV+ + + +
Sbjct: 131 KQFLGYIPIMVKSKLCNLHSLPPKALIEHHEEVEEMGGYFIINGIEKVIRMLIMPRRNFP 190
Query: 212 HVYV---FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATL 267
+ +K R P Y + + E + V M G +I R L
Sbjct: 191 IAMIRPKWKTRGPGYTQYGVSMHCVREEHSA------VNMNLHYLENGTVMLNFIYRKEL 244
Query: 268 PYIRTEIPIIIVFRALGFVADKDILEHICY-----DFQDTQMMELLRPSLEEAFVIQNQQ 322
++ P+ +AL +D I + + F + ++LR +EE Q Q
Sbjct: 245 FFL----PLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVMEEGCSTQKQ- 299
Query: 323 VALDYIGKR-GATVGVTRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLL 380
L+Y+G+R + + + A E L + + H+ + T+K Y + +L
Sbjct: 300 -VLNYLGERFRVKLSLPDWYPNEQAAEFLFNQCICIHLKSN----TEKFYMLCLMTRKLF 354
Query: 381 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR------MLFRKLTRDVRAYVQKCVDNGK 434
A G ED+ D N+ + G L + ++ K+ D R+ N +
Sbjct: 355 ALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMESWLVSIKIALDKRSQKTNVSINTE 414
Query: 435 DVNLQFAIKAKTITSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLN 492
++ F + +T +Y LATGN G +G+ V ++L + LSH R ++
Sbjct: 415 NLMRIFNL-GTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVH 473
Query: 493 SPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 548
+ + R+L WG +CP TP+G+ CGL+ +L A+ +T V +A+ P L
Sbjct: 474 RGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQCVYTASVPTL 533
Score = 44 (20.5 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 910 GMVDQVLLTTNADGLRFVKVRVRSVRIP 937
G VD+ L + A+ LR KV ++ RIP
Sbjct: 564 GWVDKELAPSIAESLRHFKV-LKEKRIP 590
>ASPGD|ASPL0000012082 [details] [associations]
symbol:AN3933 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:BN001302 EMBL:AACD01000064
GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222963
OrthoDB:EOG4W11N4 OMA:FNLLIFM RefSeq:XP_661537.1 STRING:Q5B697
EnsemblFungi:CADANIAT00004761 GeneID:2873357 KEGG:ani:AN3933.2
Uniprot:Q5B697
Length = 1231
Score = 764 (274.0 bits), Expect = 5.5e-102, Sum P(3) = 5.5e-102
Identities = 173/450 (38%), Positives = 240/450 (53%)
Query: 695 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
P + TH E P+ IL + A++ PF D+NQSPRN YQ M KQ MG T +R
Sbjct: 687 PSDLVKGLSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRT 746
Query: 755 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
D Y L Q P+V P G NA+VAI Y+GY+ +D++I+N+SS +RG
Sbjct: 747 DNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERG 806
Query: 815 FFRSLFFRS--YRDEEK-----KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 867
F +++ + +EK K V++ FG S + LD+DG G
Sbjct: 807 FGYGTVYKTKVHSLDEKDSRRTKSKQAVQKLFGFAPGSEIRAEWRAT---LDEDGFPHIG 863
Query: 868 TRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLT---TNADGL 924
+ E I+ + D H + + SE +D + + T +
Sbjct: 864 AEIK-EGSIVAAYHTVRYDATSDSYINVDGITHFVKYKDSERAYIDSIRIMGSETGTEPA 922
Query: 925 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 984
+ + V+ R R P IGDKFSSRHGQKG + DMP++ GI PD+I+NPHA PSRM
Sbjct: 923 QAISVKYRIPRKPIIGDKFSSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRM 982
Query: 985 TIGQLIECIMGKVAAHMGKEGDATPFT---DVTV-DNISKALHKCGYQMRGFETMYNGHT 1040
TI Q+IE + GK A G D TPF + T D + L + GY G E +Y+G T
Sbjct: 983 TIAQMIESMAGKAGALHGHPQDCTPFQFSEEYTATDYFGEQLRRAGYNYYGNEPLYSGIT 1042
Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
G+ A IF+G +YQRL+HMV+DK R GPV LT QP +GR++ GG+R GEMERD
Sbjct: 1043 GKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNNLTGQPVKGRAKGGGIRVGEMERDS 1102
Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCG 1130
+IAHGA++ L++RL + SD+ R +C CG
Sbjct: 1103 LIAHGAAYILQDRLMNCSDSQRAWICRDCG 1132
Score = 230 (86.0 bits), Expect = 5.5e-102, Sum P(3) = 5.5e-102
Identities = 106/414 (25%), Positives = 195/414 (47%)
Query: 33 SAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISF 92
+A FE+ G++ L D + + E+V E+A+ + + + G+++ ++ +
Sbjct: 48 NALFEKGGIIEAGLK--DIGTRTFLDEVV-ETAE---QKQQRLAEGRRAPRRNKLH-VRI 100
Query: 93 GQIYLSKPMMTESDGETA---TLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTET 149
+++L KP + ++ TA ++P R R+ TY L + RV G E+V E
Sbjct: 101 KEVFLEKPTIPLTNKYTARNRNIYPSECRERHATYRGKLRAKIEYRV-NNGDWTEQVRE- 158
Query: 150 QDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMS 209
+G+VPIMLR++ C L + + +L + E + GGYFI+NG+EK++
Sbjct: 159 -------LGQVPIMLRTNRCYLEKATPAELVQHKEESEELGGYFIVNGNEKLIRMLIVGR 211
Query: 210 TNH-VYVFKKRQPNK-YAYVA---EVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 264
N+ + + + N+ +AY ++RS+ RP T +L + G + ++
Sbjct: 212 RNYPMAIVRNTFTNRGHAYSKFGIQIRSV-----RPDQTSQTNVLHYLN-DGNVTFRFSW 265
Query: 265 ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD--------TQMMELLRPSLEEAF 316
YI IP++++ +AL D++I E I T +ELL + + A+
Sbjct: 266 RKNEYI---IPVVMILKALVETNDREIFEGIVGSASSEGINNTFVTDRVELLLRTYK-AY 321
Query: 317 VIQNQQVALDYIGKRGATV-GVTRDKRIKYA-KEILQKEMLPHVGTGDFCETK---KAYY 371
+ ++ +IG++ V GV D + A E L+K +LPH+G + ET+ K
Sbjct: 322 KLHSRSECRAFIGEKFKPVLGVPADTPNEEAGTEFLRKVVLPHLGNQNVTETQDYDKFKM 381
Query: 372 FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
++I +L G A D+ D N+ + L G L G L + +L VR++
Sbjct: 382 LMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMLLK---ERLDEWVRSF 432
Score = 130 (50.8 bits), Expect = 5.5e-102, Sum P(3) = 5.5e-102
Identities = 51/224 (22%), Positives = 94/224 (41%)
Query: 374 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR-------MLFRKLTRDV--RA 424
++I +L G A D+ D N+ + L G L G L + F + RD R
Sbjct: 384 FMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMLLKERLDEWVRSFGPILRDWSNRN 443
Query: 425 YVQKCVDNG--KD-VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRL 479
+ + D +D V+ + I ++Y L+TGN + +G + + ++
Sbjct: 444 HGARFTDPAFERDFVSKVIRRSNENIGGAMEYFLSTGNLVSPTGLDLQQTSGYTVMAEKI 503
Query: 480 TYASTLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
+ +SH R ++ + K R+L WG +CP TP+G CGL+ +LA +
Sbjct: 504 NFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCLV 563
Query: 539 TVGSAAYPIL-EFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
L + L + G N +S + ++ + ++G +G
Sbjct: 564 ATSDTDVSHLPKLLVQLGVRNESSVS---LDESVTVQLDGRIIG 604
>WB|WBGene00008781 [details] [associations]
symbol:rpoa-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0043652 "engulfment of apoptotic cell" evidence=IMP]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006351 GO:GO:0040035 GO:GO:0043652
GO:GO:0003899 HSSP:P08518 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
HOGENOM:HOG000222963 EMBL:Z75535 PIR:T20870 RefSeq:NP_492476.1
ProteinModelPortal:Q27493 SMR:Q27493 STRING:Q27493 PaxDb:Q27493
EnsemblMetazoa:F14B4.3 GeneID:172752 KEGG:cel:CELE_F14B4.3
UCSC:F14B4.3 CTD:172752 WormBase:F14B4.3 InParanoid:Q27493
NextBio:876871 Uniprot:Q27493
Length = 1127
Score = 766 (274.7 bits), Expect = 2.9e-101, Sum P(3) = 2.9e-101
Identities = 175/447 (39%), Positives = 239/447 (53%)
Query: 693 LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 752
L PEEA H E+HPS + ++IPFPDHNQSPRN YQ MGKQ MG V +
Sbjct: 625 LDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHS 684
Query: 753 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 812
R D Y L +PQ+P++ A E + P G NA VA+ Y+GY+ ED++ +N++S
Sbjct: 685 RADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQ 744
Query: 813 RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 872
RGF + R LV E R ++ + DGL PG R
Sbjct: 745 RGFAHGTVIKVERIN------LVTE---RERKTIFYRNPREEIKTVGPDGLPIPGRRYFL 795
Query: 873 EDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
++V T + + + Y + +R E G D G + ++ R
Sbjct: 796 DEVYY-VTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDS--------GAKHALIQWR 846
Query: 933 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
R P IGDKF+SRHGQKG + E +P++ G+ PDII NPH PSRMTIG +IE
Sbjct: 847 IERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIES 906
Query: 993 IMGKVAAHMGKEGDATPFT---DVT-VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 1048
+ GK AA G+ DA+PF D T +++ + L K GY G ET Y+G GR++ I
Sbjct: 907 MAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQI 966
Query: 1049 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 1108
F G YYQRL+HM+ DK R GP+ +T QP +GR + GG+RFGEMERD +IAHG S
Sbjct: 967 FFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSF 1026
Query: 1109 FLKERLFDQSDAYRVHVCEHCG-LIAI 1134
L++RL + SD + C CG L+++
Sbjct: 1027 VLQDRLLNCSDRDVAYACRRCGSLLSV 1053
Score = 295 (108.9 bits), Expect = 2.9e-101, Sum P(3) = 2.9e-101
Identities = 135/524 (25%), Positives = 226/524 (43%)
Query: 90 ISFGQIYLSKPMM---TESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 146
+ F L KP + + +T L P R R LTY+ L V + V +G +
Sbjct: 43 MKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHV-----NGSRL 97
Query: 147 TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV---LI 203
D ++ +GKVPIMLRS C L S K+L GE P ++GGYFI+NGSEKV LI
Sbjct: 98 ----DIIEIILGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLI 153
Query: 204 AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAES--QNRPPSTMFVRMLSRTSAKGGSSGQ 261
A + + + +K K +E M S +N M + L + + + Q
Sbjct: 154 ANRRNFP--IAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQ--LALQ 209
Query: 262 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY-----DFQDTQMMELLRPSLEEAF 316
+ R + Y+ P++ + +AL D I F + ++ +L EE
Sbjct: 210 F-RREIFYV----PLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEE- 263
Query: 317 VIQNQQVALDYIGKRGATVGVTR----DKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 372
I NQ+ A+ IG R R + ++ + I+++ +L H+ + + +K +
Sbjct: 264 -ILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDE----EKFHTL 318
Query: 373 GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 432
Y+ +L+ G A + D+ + ++G +L + R + VR ++ + +
Sbjct: 319 AYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEY-MSS 377
Query: 433 GKDVNLQFA--IKAK------TITSGLKYSLATGNWGQ--ANAAGTRAGVSQVLNRLTYA 482
KD L A +KA IT G+ Y LATGN A +G S + R+
Sbjct: 378 RKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQL 437
Query: 483 STLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
+SH R ++ E + R+L WG +CP TP+G CGL+ ++ I
Sbjct: 438 RFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTD 497
Query: 542 -SAAYPILEFLEEWGTENFEEISPAVIPQATKIF---VNGCWVG 581
S + L E G + + A+ P +++ +NG ++G
Sbjct: 498 LSDNSNVPSLLAELGMYTHKTV--ALAPPGEELYPVLMNGRFLG 539
Score = 46 (21.3 bits), Expect = 2.9e-101, Sum P(3) = 2.9e-101
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTK 1185
CR C + + +P + L EL AM + ++ + +K
Sbjct: 1082 CRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIEHPSK 1123
>UNIPROTKB|Q9H9Y6 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
EMBL:AC012442 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 EMBL:AK022533 EMBL:AK022890
EMBL:AK128044 IPI:IPI00026445 IPI:IPI01010348 RefSeq:NP_001131076.1
RefSeq:NP_061887.2 UniGene:Hs.741552 ProteinModelPortal:Q9H9Y6
SMR:Q9H9Y6 DIP:DIP-27538N IntAct:Q9H9Y6 MINT:MINT-4727878
STRING:Q9H9Y6 PhosphoSite:Q9H9Y6 DMDM:92090637 SWISS-2DPAGE:Q9H9Y6
PaxDb:Q9H9Y6 PRIDE:Q9H9Y6 Ensembl:ENST00000263331
Ensembl:ENST00000417433 GeneID:84172 KEGG:hsa:84172 UCSC:uc002thw.2
UCSC:uc010fkn.2 CTD:84172 GeneCards:GC02P113299 H-InvDB:HIX0002380
HGNC:HGNC:20454 HPA:HPA037528 MIM:602000 neXtProt:NX_Q9H9Y6
PharmGKB:PA130601182 HOVERGEN:HBG017742 InParanoid:Q9H9Y6
OrthoDB:EOG4H9XJP PhylomeDB:Q9H9Y6 GenomeRNAi:84172 NextBio:73536
ArrayExpress:Q9H9Y6 Bgee:Q9H9Y6 CleanEx:HS_POLR1B
Genevestigator:Q9H9Y6 GermOnline:ENSG00000125630 GO:GO:0017126
Gene3D:2.40.50.150 Uniprot:Q9H9Y6
Length = 1135
Score = 815 (292.0 bits), Expect = 6.5e-101, Sum P(2) = 6.5e-101
Identities = 195/504 (38%), Positives = 266/504 (52%)
Query: 696 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
+E +A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 649 DEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSD 708
Query: 756 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 709 NKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 768
Query: 816 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 871
++S + D +K +K+ D S G++ G KLDDDGL G ++
Sbjct: 769 AHGSVYKSEFIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ 820
Query: 872 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 928
D ++ + + Y +++ + VD + + +N G + V
Sbjct: 821 YGDPYYSY---LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVC 868
Query: 929 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 869 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 928
Query: 989 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 929 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLEL 988
Query: 1045 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1104
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 989 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 1048
Query: 1105 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1154
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 1049 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTID 1108
Query: 1155 QVHIPYACKLLFQELMAMAIAPRM 1178
V +PY + EL AM I ++
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKL 1132
Score = 235 (87.8 bits), Expect = 6.5e-101, Sum P(2) = 6.5e-101
Identities = 127/496 (25%), Positives = 205/496 (41%)
Query: 82 DFAETIYKISFGQI--YLSKPMMTESD-GETATLFPKAARLRNLTYSAPLYVDVTKRV-- 136
+FA +ISF + +S P + + + A ++P R R TY L D+ V
Sbjct: 65 EFAFKDERISFTILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNG 124
Query: 137 IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 196
I KG K F+G VPIM++S C L + L E E + GGYFIIN
Sbjct: 125 ISKG-----------IIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIIN 173
Query: 197 GSEKVL--IAQEKMSTNHVYV---FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR 251
G EKV+ + + + + +K R P Y + + E + V M
Sbjct: 174 GIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSA------VNMNLH 227
Query: 252 TSAKGGSSGQYI-RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM----- 305
G +I R L ++ P+ +AL +D I + + +D +
Sbjct: 228 YLENGTVMLNFIYRKELFFL----PLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVS 283
Query: 306 ELLRPSLEEAFVIQNQQVALDYIGKR-GATVGVTRDKRIKYAKEILQKEMLP-HVGTGDF 363
++LR +EE Q Q L+Y+G+ + V + A E L + + H+ +
Sbjct: 284 QMLRIVMEEGCSTQKQ--VLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSN-- 339
Query: 364 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL-LGGLFRMLFRKLTRDV 422
T+K Y + +L A G ED+ D N+ + G L L L L L
Sbjct: 340 --TEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIK 397
Query: 423 RAYVQKCVDNGKDVNLQFAIKAKT----ITSGLKYSLATGNWGQANAAGTR--AGVSQVL 476
A+ +K +N ++ T +T +Y ATGN G +G+ V
Sbjct: 398 IAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVA 457
Query: 477 NRLTYASTLSHLRRLNSPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-AL 534
++L + LSH R ++ + + R+L WG +CP TP+G+ CGL+ +L A+
Sbjct: 458 DKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAV 517
Query: 535 MVYIT--VGSAAYPIL 548
+T V +A+ P L
Sbjct: 518 CEVVTQFVYTASIPAL 533
Score = 47 (21.6 bits), Expect = 9.8e-15, Sum P(2) = 9.8e-15
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 910 GMVDQVLLTTNADGLRFVKVRVRSVRIP 937
G VD+ L AD LR KV +R RIP
Sbjct: 564 GWVDKDLAPGIADSLRHFKV-LREKRIP 590
>RGD|620822 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007566 "embryo implantation"
evidence=IEA;ISO] [GO:0009303 "rRNA transcription"
evidence=IEA;ISO;IDA] [GO:0009790 "embryo development"
evidence=IEA;ISO] [GO:0017126 "nucleologenesis" evidence=IEA;ISO]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 797 (285.6 bits), Expect = 1.5e-100, Sum P(3) = 1.5e-100
Identities = 194/490 (39%), Positives = 258/490 (52%)
Query: 710 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
PS V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D Y L PQ PLV
Sbjct: 663 PSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLV 722
Query: 770 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS-YRDEE 828
+H P G NAIVA+ Y+GY+ ED++I+N++S +RGF ++S + D
Sbjct: 723 RPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID-- 780
Query: 829 KKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
+ E F + D S G++ G KLD+DGL G ++ D G ++
Sbjct: 781 ------LSEKFKQGDDSLVFGVKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGY---LNL 831
Query: 886 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVKVRVRSVRIPQIGDK 942
+ +G Y +++ + VD + + +N G + V V VR R P IGDK
Sbjct: 832 NTGEGFVVYYKSKENCV---------VDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDK 882
Query: 943 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
F+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG LIE + GK AA G
Sbjct: 883 FASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHG 942
Query: 1003 KEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
DATPF + ++ + L GY G E +Y+G +G L A IF+G YYQRL
Sbjct: 943 LCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRL 1002
Query: 1059 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 1118
+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG S L +RLF+ S
Sbjct: 1003 RHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCS 1062
Query: 1119 DAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIVQVHIPYACKLLFQE 1168
D HVC CG + L+K + C C I V +PY + E
Sbjct: 1063 DRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAE 1122
Query: 1169 LMAMAIAPRM 1178
L AM I ++
Sbjct: 1123 LAAMNIKVKL 1132
Score = 166 (63.5 bits), Expect = 1.5e-100, Sum P(3) = 1.5e-100
Identities = 73/294 (24%), Positives = 126/294 (42%)
Query: 274 IPIIIVFRALGFVADKDILEHICY-----DFQDTQMMELLRPSLEEAFVIQNQQVALDYI 328
+P+ +AL +D I + + F + ++LR +EE Q Q LDY+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQ--VLDYL 304
Query: 329 GKRGATVGVTRD--KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
G+R D + A+ + + + H+ + T K Y + +L A G
Sbjct: 305 GERFRVKLSLPDWYPNAEAAEFLFNQCICIHLKSN----TDKFYLLCLMTRKLFALARGE 360
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFR------MLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
ED+ D N+ + G L + +L K+ D RA N +++ F
Sbjct: 361 CMEDNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIF 420
Query: 441 AIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPIG-R 497
++ + +T +Y LATGN G +G+ V ++L + LSH R ++
Sbjct: 421 SMGTE-LTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 479
Query: 498 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 548
+ + R+L WG +CP TP+G CGL+ +L A+ +T V +A+ P L
Sbjct: 480 KMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPAL 533
Score = 125 (49.1 bits), Expect = 1.5e-100, Sum P(3) = 1.5e-100
Identities = 35/93 (37%), Positives = 46/93 (49%)
Query: 112 LFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYC 169
++P R R TY L D++ V + KG K F+G VPIM++S C
Sbjct: 98 IYPAECRGRRSTYRGKLTADISWAVNGVPKG-----------IIKQFLGXVPIMVKSKLC 146
Query: 170 TLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
LY + L E E + GGYFIING EKV+
Sbjct: 147 NLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVI 179
Score = 37 (18.1 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 910 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
G VD+ L AD LR KV +R R + H +K
Sbjct: 564 GWVDKELAPEVADTLRRFKV-LRERRCSSLDGGGPDSHDRK 603
>UNIPROTKB|O54888 [details] [associations]
symbol:Polr1b "DNA-directed RNA polymerase I subunit RPA2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 797 (285.6 bits), Expect = 1.5e-100, Sum P(3) = 1.5e-100
Identities = 194/490 (39%), Positives = 258/490 (52%)
Query: 710 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
PS V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D Y L PQ PLV
Sbjct: 663 PSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLV 722
Query: 770 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS-YRDEE 828
+H P G NAIVA+ Y+GY+ ED++I+N++S +RGF ++S + D
Sbjct: 723 RPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID-- 780
Query: 829 KKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
+ E F + D S G++ G KLD+DGL G ++ D G ++
Sbjct: 781 ------LSEKFKQGDDSLVFGVKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGY---LNL 831
Query: 886 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVKVRVRSVRIPQIGDK 942
+ +G Y +++ + VD + + +N G + V V VR R P IGDK
Sbjct: 832 NTGEGFVVYYKSKENCV---------VDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDK 882
Query: 943 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
F+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG LIE + GK AA G
Sbjct: 883 FASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHG 942
Query: 1003 KEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
DATPF + ++ + L GY G E +Y+G +G L A IF+G YYQRL
Sbjct: 943 LCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRL 1002
Query: 1059 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 1118
+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG S L +RLF+ S
Sbjct: 1003 RHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCS 1062
Query: 1119 DAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIVQVHIPYACKLLFQE 1168
D HVC CG + L+K + C C I V +PY + E
Sbjct: 1063 DRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAE 1122
Query: 1169 LMAMAIAPRM 1178
L AM I ++
Sbjct: 1123 LAAMNIKVKL 1132
Score = 166 (63.5 bits), Expect = 1.5e-100, Sum P(3) = 1.5e-100
Identities = 73/294 (24%), Positives = 126/294 (42%)
Query: 274 IPIIIVFRALGFVADKDILEHICY-----DFQDTQMMELLRPSLEEAFVIQNQQVALDYI 328
+P+ +AL +D I + + F + ++LR +EE Q Q LDY+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQ--VLDYL 304
Query: 329 GKRGATVGVTRD--KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
G+R D + A+ + + + H+ + T K Y + +L A G
Sbjct: 305 GERFRVKLSLPDWYPNAEAAEFLFNQCICIHLKSN----TDKFYLLCLMTRKLFALARGE 360
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFR------MLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
ED+ D N+ + G L + +L K+ D RA N +++ F
Sbjct: 361 CMEDNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIF 420
Query: 441 AIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPIG-R 497
++ + +T +Y LATGN G +G+ V ++L + LSH R ++
Sbjct: 421 SMGTE-LTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 479
Query: 498 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 548
+ + R+L WG +CP TP+G CGL+ +L A+ +T V +A+ P L
Sbjct: 480 KMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPAL 533
Score = 125 (49.1 bits), Expect = 1.5e-100, Sum P(3) = 1.5e-100
Identities = 35/93 (37%), Positives = 46/93 (49%)
Query: 112 LFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYC 169
++P R R TY L D++ V + KG K F+G VPIM++S C
Sbjct: 98 IYPAECRGRRSTYRGKLTADISWAVNGVPKG-----------IIKQFLGXVPIMVKSKLC 146
Query: 170 TLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
LY + L E E + GGYFIING EKV+
Sbjct: 147 NLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVI 179
Score = 37 (18.1 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 910 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
G VD+ L AD LR KV +R R + H +K
Sbjct: 564 GWVDKELAPEVADTLRRFKV-LRERRCSSLDGGGPDSHDRK 603
>UNIPROTKB|F1SUA2 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677 GO:GO:0009790
GO:GO:0009303 GO:GO:0007566 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:CU856034 Ensembl:ENSSSCT00000008871
Uniprot:F1SUA2
Length = 1172
Score = 804 (288.1 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 199/505 (39%), Positives = 267/505 (52%)
Query: 696 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
+E A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + ++ R D
Sbjct: 686 DEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFKDRSD 745
Query: 756 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 746 NKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMILNKASWERGF 805
Query: 816 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 871
++S + D +K +K+ D S G+R G KLDDDGL G ++
Sbjct: 806 AHGSVYKSEFIDLSEK----IKQG----DDSLVFGVRPGDPRVAQKLDDDGLPFVGAQLQ 857
Query: 872 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RF--VK 928
G D + T + + E +VD + + N G RF V
Sbjct: 858 -----YG-------DPYYSYLNLNTGESFVVYYKSKENCIVDNIKVCGNDTGSGRFKCVC 905
Query: 929 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 906 ITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGM 965
Query: 989 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 966 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNYYGTERLYSGISGLEL 1025
Query: 1045 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1104
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 1026 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 1085
Query: 1105 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1154
G S L +RLF+ SD HVC CG + L+K + C C N++D +
Sbjct: 1086 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYSCSLC-NRSDTI 1144
Query: 1155 Q-VHIPYACKLLFQELMAMAIAPRM 1178
V +PY + EL AM I ++
Sbjct: 1145 DTVSVPYVFRYFVAELAAMNIKVKL 1169
Score = 253 (94.1 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 125/463 (26%), Positives = 193/463 (41%)
Query: 112 LFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYC 169
++P R R TY L D++ V I KG K F+G VPIM++S C
Sbjct: 134 IYPAECRGRRSTYRGRLTADISWAVNGISKG-----------VIKQFLGYVPIMVKSKLC 182
Query: 170 TLYQNSEKDLTELGECPYDQGGYFIINGSEKVL--IAQEKMSTNHVYV---FKKRQPNKY 224
LY S + L E E + GGYFIING EKV+ + + + V +K R P
Sbjct: 183 NLYSLSPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYT 242
Query: 225 AYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVFRAL 283
YV V + M + L G +I R L ++ P+ +AL
Sbjct: 243 QYVG-VSMHCVREEHSAVNMNLHYLEN----GTVMLNFIYRKELFFL----PLGFALKAL 293
Query: 284 GFVADKDILEHICYDFQDTQMM-----ELLRPSLEEAFVIQNQQVALDYIGKR-GATVGV 337
+D I + + +D + ++LR +EE Q Q L+Y+G+R V +
Sbjct: 294 VSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCATQKQ--VLNYLGERFRVKVNL 351
Query: 338 TRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYG 396
+ A E L E + H+ + T+K Y + +L A G E++ D
Sbjct: 352 PDWYPNEQAAEFLFNECICIHLKSN----TEKFYMLCLMTRKLFALAKGECMEENPDSLV 407
Query: 397 NKRLDLAGPL-LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI----TSGL 451
N+ + G L L L L L A +K +N + +K + T
Sbjct: 408 NQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKAQKTSVSLNTENLMKILNLGIDLTKPF 467
Query: 452 KYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIG-REGKLAKPRQLH 508
+Y LATGN G +G+ V ++L + LSH R ++ + + R+L
Sbjct: 468 EYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLL 527
Query: 509 NSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 548
WG +CP TP+G+ CGL+ +L A +T V +A+ P L
Sbjct: 528 PESWGFLCPVHTPDGEPCGLMNHLTATCEVVTQFVYTASIPAL 570
>UNIPROTKB|F5GZX4 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00418797 Ensembl:ENST00000541869 ArrayExpress:F5GZX4
Bgee:F5GZX4 Uniprot:F5GZX4
Length = 1173
Score = 815 (292.0 bits), Expect = 3.3e-100, Sum P(2) = 3.3e-100
Identities = 195/504 (38%), Positives = 266/504 (52%)
Query: 696 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
+E +A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 687 DEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSD 746
Query: 756 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 747 NKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 806
Query: 816 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 871
++S + D +K +K+ D S G++ G KLDDDGL G ++
Sbjct: 807 AHGSVYKSEFIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ 858
Query: 872 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 928
D ++ + + Y +++ + VD + + +N G + V
Sbjct: 859 YGDPYYSY---LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVC 906
Query: 929 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 907 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 966
Query: 989 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 967 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLEL 1026
Query: 1045 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1104
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 1027 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 1086
Query: 1105 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1154
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 1087 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTID 1146
Query: 1155 QVHIPYACKLLFQELMAMAIAPRM 1178
V +PY + EL AM I ++
Sbjct: 1147 TVSVPYVFRYFVAELAAMNIKVKL 1170
Score = 235 (87.8 bits), Expect = 3.3e-100, Sum P(2) = 3.3e-100
Identities = 127/496 (25%), Positives = 205/496 (41%)
Query: 82 DFAETIYKISFGQI--YLSKPMMTESD-GETATLFPKAARLRNLTYSAPLYVDVTKRV-- 136
+FA +ISF + +S P + + + A ++P R R TY L D+ V
Sbjct: 103 EFAFKDERISFTILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNG 162
Query: 137 IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 196
I KG K F+G VPIM++S C L + L E E + GGYFIIN
Sbjct: 163 ISKG-----------IIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIIN 211
Query: 197 GSEKVL--IAQEKMSTNHVYV---FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR 251
G EKV+ + + + + +K R P Y + + E + V M
Sbjct: 212 GIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSA------VNMNLH 265
Query: 252 TSAKGGSSGQYI-RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM----- 305
G +I R L ++ P+ +AL +D I + + +D +
Sbjct: 266 YLENGTVMLNFIYRKELFFL----PLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVS 321
Query: 306 ELLRPSLEEAFVIQNQQVALDYIGKR-GATVGVTRDKRIKYAKEILQKEMLP-HVGTGDF 363
++LR +EE Q Q L+Y+G+ + V + A E L + + H+ +
Sbjct: 322 QMLRIVMEEGCSTQKQ--VLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSN-- 377
Query: 364 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL-LGGLFRMLFRKLTRDV 422
T+K Y + +L A G ED+ D N+ + G L L L L L
Sbjct: 378 --TEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIK 435
Query: 423 RAYVQKCVDNGKDVNLQFAIKAKT----ITSGLKYSLATGNWGQANAAGTR--AGVSQVL 476
A+ +K +N ++ T +T +Y ATGN G +G+ V
Sbjct: 436 IAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVA 495
Query: 477 NRLTYASTLSHLRRLNSPIG-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-AL 534
++L + LSH R ++ + + R+L WG +CP TP+G+ CGL+ +L A+
Sbjct: 496 DKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAV 555
Query: 535 MVYIT--VGSAAYPIL 548
+T V +A+ P L
Sbjct: 556 CEVVTQFVYTASIPAL 571
Score = 47 (21.6 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 910 GMVDQVLLTTNADGLRFVKVRVRSVRIP 937
G VD+ L AD LR KV +R RIP
Sbjct: 602 GWVDKDLAPGIADSLRHFKV-LREKRIP 628
>UNIPROTKB|A6QLS0 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677
GO:GO:0009790 GO:GO:0009303 GO:GO:0007566 GO:GO:0005736
GO:GO:0003899 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 HOGENOM:HOG000222963 EMBL:DAAA02031075
EMBL:BC148064 IPI:IPI00708666 RefSeq:NP_001093762.1
UniGene:Bt.13051 STRING:A6QLS0 Ensembl:ENSBTAT00000018830
GeneID:282342 KEGG:bta:282342 InParanoid:A6QLS0 NextBio:20806137
Uniprot:A6QLS0
Length = 1135
Score = 799 (286.3 bits), Expect = 2.4e-99, Sum P(2) = 2.4e-99
Identities = 195/504 (38%), Positives = 269/504 (53%)
Query: 696 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
+E A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + +Q R D
Sbjct: 649 DEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSD 708
Query: 756 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 709 NKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 768
Query: 816 FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSG 872
++S E + +K+ D S G++ G KLD+DGL G ++
Sbjct: 769 AHGSVYKS---EFIDLSERIKQG----DDSLVFGVKPGDPRVLQKLDNDGLPFIGAQLKY 821
Query: 873 EDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RF--VKV 929
D ++ + +G Y +++ I VD + + +N G +F V +
Sbjct: 822 GDPYYSY---LNLNTGEGFVMYYKSKENCI---------VDNIKVCSNDTGTGKFKCVCI 869
Query: 930 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 989
+R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG L
Sbjct: 870 TMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGML 929
Query: 990 IECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 1045
IE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 930 IESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNYYGTERLYSGISGLELE 989
Query: 1046 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 1105
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG
Sbjct: 990 ADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHG 1049
Query: 1106 ASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIVQ 1155
S L +RLF+ SD HVC CG + L+K + C C N++D +
Sbjct: 1050 TSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSALRNRKYICALC-NRSDTID 1108
Query: 1156 -VHIPYACKLLFQELMAMAIAPRM 1178
+ +PY + EL AM I ++
Sbjct: 1109 TISLPYVFRYFVAELAAMNIKVKL 1132
Score = 244 (91.0 bits), Expect = 2.4e-99, Sum P(2) = 2.4e-99
Identities = 118/464 (25%), Positives = 196/464 (42%)
Query: 112 LFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYC 169
++P R R TY L D++ V I KG K F+G VPIM++S C
Sbjct: 98 VYPAECRGRRSTYRGKLTADISWSVNGISKG-----------VIKQFLGYVPIMVKSKLC 146
Query: 170 TLYQNSEKDLTELGECPYDQGGYFIINGSEKVL--IAQEKMSTNHVYV---FKKRQPNKY 224
LY K L E E + GGYFIING EKV+ + + + V +K R P
Sbjct: 147 NLYNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYT 206
Query: 225 AYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVFRAL 283
Y + + E + V M G +I R L ++ P+ +AL
Sbjct: 207 QYGVSMHCVREEHSA------VNMNLHYLENGTVMLNFIYRKELFFL----PLGFALKAL 256
Query: 284 GFVADKDILEHICYDFQD-----TQMMELLRPSLEEAFVIQNQQVALDYIGKR-GATVGV 337
+D I + + +D + ++LR +EE Q Q L+Y+G+R + +
Sbjct: 257 VSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQ--VLNYLGERFRVKLSL 314
Query: 338 TRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYG 396
+ A E L + + H+ + T+K Y + +L A G E++ D
Sbjct: 315 PDWYPNEQAAEFLFNQCICIHLKSN----TEKFYMLCLMTRKLFALAKGECMEENPDSLM 370
Query: 397 NKRLDLAGPLLGGLFR------MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSG 450
N+ + G L + ++ K+ D ++ N +++ F++ +T
Sbjct: 371 NQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSLGID-LTKP 429
Query: 451 LKYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIG-REGKLAKPRQL 507
+Y LATGN G +G+ V ++L + LSH R ++ + + R+L
Sbjct: 430 FEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRL 489
Query: 508 HNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 548
WG +CP TP+G+ CGL+ +L A+ +T V +A+ P L
Sbjct: 490 LPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQSVYTASIPAL 533
>MGI|MGI:108014 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IMP]
[GO:0009303 "rRNA transcription" evidence=ISO;IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IMP]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Reactome:REACT_78136
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 MGI:MGI:108014 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
EMBL:CH466519 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
GO:GO:0005736 GO:GO:0003899 CleanEx:MM_RPA2 Reactome:REACT_86751
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 EMBL:U58280 EMBL:AK143501 EMBL:AK144616
EMBL:AL833780 EMBL:BX000699 IPI:IPI00112769 PIR:T42723
RefSeq:NP_033112.2 UniGene:Mm.259078 ProteinModelPortal:P70700
STRING:P70700 PhosphoSite:P70700 PaxDb:P70700 PRIDE:P70700
Ensembl:ENSMUST00000103205 GeneID:20017 KEGG:mmu:20017
HOGENOM:HOG000222963 InParanoid:Q3UMX7 NextBio:297521 Bgee:P70700
Genevestigator:P70700 GermOnline:ENSMUSG00000027395 Uniprot:P70700
Length = 1135
Score = 802 (287.4 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
Identities = 192/504 (38%), Positives = 264/504 (52%)
Query: 696 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
+E + TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 649 DEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSD 708
Query: 756 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
Y L PQ PLV + P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 709 NKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 768
Query: 816 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 871
++S + D + E F + + + G++ G KLDDDGL G ++
Sbjct: 769 AHGSVYKSEFID--------LSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLE 820
Query: 872 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 928
D ++ + +G Y +++ + VD + + +N G + +
Sbjct: 821 YGDPYYSY---LNLNTGEGFVVYYKSKENCV---------VDNIKVCSNDMGSGKFKCIC 868
Query: 929 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
+ VR R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 869 ITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGM 928
Query: 989 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 929 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMEL 988
Query: 1045 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1104
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 989 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAH 1048
Query: 1105 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1154
G S L +RLF+ SD H+C CG + L+K + C C I
Sbjct: 1049 GTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTID 1108
Query: 1155 QVHIPYACKLLFQELMAMAIAPRM 1178
V +PY + EL AM I ++
Sbjct: 1109 TVSVPYVFRYFVAELAAMNIKVKL 1132
Score = 233 (87.1 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
Identities = 122/472 (25%), Positives = 204/472 (43%)
Query: 112 LFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYC 169
++P R R TY L D++ V + KG K F+G VPIM++S C
Sbjct: 98 VYPAECRGRKSTYRGRLTADISWAVNGVPKG-----------IIKQFLGYVPIMVKSKLC 146
Query: 170 TLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAE 229
LY + L E E + GGYFIING EKV+ +M + V ++ P +A
Sbjct: 147 NLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVI----RM----LIVPRRNFP-----IAM 193
Query: 230 VRSMAESQNRPPSTMF---VRMLSRTSAKGGSSGQYIR---ATLPYI-RTEI---PIIIV 279
VR +S+ T F +R + + + Y+ L +I R E+ P+
Sbjct: 194 VRPKWKSRGLG-YTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFA 252
Query: 280 FRALGFVADKDILEHICY-----DFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT 334
+AL +D I + + F + ++LR +EE +Q+ L+Y+G+
Sbjct: 253 LKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEG--CHSQKQVLNYLGECFRV 310
Query: 335 VGVTRD--KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDR 392
D ++ A+ +L + + H+ + T K Y + +L A G +D+
Sbjct: 311 KLSLPDWYPNVEAAEFLLNQCICIHLQSN----TDKFYLLCLMTRKLFALARGECMDDNP 366
Query: 393 DHYGNKRLDLAGPLLGGLFRMLFR----------KLTRDVRAYVQKCVDNGKDVNLQFAI 442
D N+ ++ P G LF M + K+ D RA N +++ F++
Sbjct: 367 DSLVNQ--EVLSP--GQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSM 422
Query: 443 KAKTITSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIG-REG 499
+ +T +Y LATGN G +G+ V ++L + LSH R ++ +
Sbjct: 423 GTE-LTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKM 481
Query: 500 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 548
+ R+L WG +CP TP+G CGL+ +L A+ +T V +A+ P L
Sbjct: 482 RTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPAL 533
>ZFIN|ZDB-GENE-040426-1598 [details] [associations]
symbol:polr1b "polymerase (RNA) I polypeptide B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
ZFIN:ZDB-GENE-040426-1598 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
EMBL:BC097040 IPI:IPI00859868 RefSeq:NP_956812.2 UniGene:Dr.117892
STRING:Q4V967 DNASU:325603 GeneID:325603 KEGG:dre:325603
InParanoid:Q4V967 NextBio:20809377 ArrayExpress:Q4V967
Uniprot:Q4V967
Length = 1132
Score = 790 (283.2 bits), Expect = 1.2e-96, Sum P(3) = 1.2e-96
Identities = 200/497 (40%), Positives = 260/497 (52%)
Query: 704 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
TH E+ P +L V A IPF DHNQSPRN YQ M KQ MG + +YQ+R D Y L
Sbjct: 655 THQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQT 714
Query: 764 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
PQ PLV +H P G NAIVA+ Y+GY+ ED++I+N+SS +RGF
Sbjct: 715 PQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSV--- 771
Query: 824 YRDEEKKMGTLVKED----FG-RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
Y+ E + VK D FG +P MG KLD DGL G+ + D G
Sbjct: 772 YKTEIIDLSEKVKGDDSIVFGVKPGDPKVMG-------KLDADGLPFIGSVLKYGDPFYG 824
Query: 879 KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
IS + Q Y ++ + + T + + V R R P
Sbjct: 825 Y---ISLNTGQSHVYFYKYQESCV------VDNIKVCSNETGTGRFKRICVTSRVPRNPT 875
Query: 939 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
IGDKF+SRHGQKG + + EDMP+T G++PDI+ NPH PSRMTIG LIE + GK A
Sbjct: 876 IGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSA 935
Query: 999 AHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1054
+ G DATPFT + +++ + L GY G E +Y+G +G L A IF+G Y
Sbjct: 936 SLHGLCHDATPFTFSEENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVY 995
Query: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERL 1114
YQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AHG S L +RL
Sbjct: 996 YQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDRL 1055
Query: 1115 FDQSDAYRVHVCEHCGLIAIANLKK---NSFECRGCK------NKTDIVQ-VHIPYACKL 1164
F+ SD VC CG + L+K N R K NK+D ++ V +PY K
Sbjct: 1056 FNCSDRSVAQVCMDCGSLLSTLLEKPPPNWSATRHRKTICLLCNKSDSIETVSVPYVFKY 1115
Query: 1165 LFQELMAMAIAPRMLTK 1181
EL AM I ++ K
Sbjct: 1116 FVAELAAMNIKIKLDVK 1132
Score = 136 (52.9 bits), Expect = 1.2e-96, Sum P(3) = 1.2e-96
Identities = 39/116 (33%), Positives = 58/116 (50%)
Query: 90 ISFGQIYLSKPMMTESD-GETATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEV 146
+SF + + P +++ +FP R R TY A L DV+ V + KG
Sbjct: 74 LSFVEAIIHTPSVSKGGISRDLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKG------ 127
Query: 147 TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
K +G++PIM++S C L+ S K+L E E + GGYFI+NG EKV+
Sbjct: 128 -----IIKQSLGQMPIMVKSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVI 178
Score = 128 (50.1 bits), Expect = 1.2e-96, Sum P(3) = 1.2e-96
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 447 ITSGLKYSLATGNWGQANAAGT--RAGVSQVLNRLTYASTLSHLRRLNSPIG-REGKLAK 503
+T +Y LATGN G +G+ V ++L + LSH R ++ + +
Sbjct: 424 LTKAFEYLLATGNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTT 483
Query: 504 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 546
R+L WG +CP TP+G+ CGL+ ++ + + + YP
Sbjct: 484 VRKLLPESWGFLCPVHTPDGEPCGLMNHMT--AHCEIVAPVYP 524
Score = 55 (24.4 bits), Expect = 4.0e-88, Sum P(3) = 4.0e-88
Identities = 23/103 (22%), Positives = 43/103 (41%)
Query: 41 LVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKP 100
LV+ ++SFD+ + + + +V+ +E + +SF + + P
Sbjct: 37 LVKAHIESFDQAVTDGLCRVVEAIPPMEFLYKGDR------------ISLSFVEAIIHTP 84
Query: 101 MMTESD-GETATLFPKAARLRNLTYSAPLYVDVTKRV--IKKG 140
+++ +FP R R TY A L DV+ V + KG
Sbjct: 85 SVSKGGISRDLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKG 127
>UNIPROTKB|F5H643 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04565 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0005730 GO:GO:0003677 GO:GO:0009790 GO:GO:0009303
GO:GO:0007566 EMBL:AC012442 GO:GO:0005736 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 GO:GO:0017126
Gene3D:2.40.50.150 IPI:IPI01013053 ProteinModelPortal:F5H643
Ensembl:ENST00000537335 ArrayExpress:F5H643 Bgee:F5H643
Uniprot:F5H643
Length = 924
Score = 815 (292.0 bits), Expect = 2.6e-95, Sum P(2) = 2.6e-95
Identities = 195/504 (38%), Positives = 266/504 (52%)
Query: 696 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
+E +A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 438 DEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSD 497
Query: 756 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 498 NKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 557
Query: 816 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 871
++S + D +K +K+ D S G++ G KLDDDGL G ++
Sbjct: 558 AHGSVYKSEFIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ 609
Query: 872 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 928
D ++ + + Y +++ + VD + + +N G + V
Sbjct: 610 YGDPYYSY---LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVC 657
Query: 929 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 658 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 717
Query: 989 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 718 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLEL 777
Query: 1045 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1104
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 778 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 837
Query: 1105 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1154
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 838 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTID 897
Query: 1155 QVHIPYACKLLFQELMAMAIAPRM 1178
V +PY + EL AM I ++
Sbjct: 898 TVSVPYVFRYFVAELAAMNIKVKL 921
Score = 154 (59.3 bits), Expect = 2.6e-95, Sum P(2) = 2.6e-95
Identities = 73/293 (24%), Positives = 125/293 (42%)
Query: 274 IPIIIVFRALGFVADKDILEHICYDFQDTQMM-----ELLRPSLEEAFVIQNQQVALDYI 328
+P+ +AL +D I + + +D + ++LR +EE Q Q L+Y+
Sbjct: 36 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQ--VLNYL 93
Query: 329 GKR-GATVGVTRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
G+ + V + A E L + + H+ + T+K Y + +L A G
Sbjct: 94 GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSN----TEKFYMLCLMTRKLFALAKGE 149
Query: 387 RAEDDRDHYGNKRLDLAGPL-LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
ED+ D N+ + G L L L L L A+ +K +N ++
Sbjct: 150 CMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIF 209
Query: 446 T----ITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPIG-RE 498
T +T +Y ATGN G +G+ V ++L + LSH R ++ +
Sbjct: 210 TMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAK 269
Query: 499 GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL-ALMVYIT--VGSAAYPIL 548
+ R+L WG +CP TP+G+ CGL+ +L A+ +T V +A+ P L
Sbjct: 270 MRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPAL 322
Score = 47 (21.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 910 GMVDQVLLTTNADGLRFVKVRVRSVRIP 937
G VD+ L AD LR KV +R RIP
Sbjct: 353 GWVDKDLAPGIADSLRHFKV-LREKRIP 379
>UNIPROTKB|F8W898 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AC012442 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00916790 ProteinModelPortal:F8W898 SMR:F8W898
Ensembl:ENST00000409894 UCSC:uc010fko.2 ArrayExpress:F8W898
Bgee:F8W898 Uniprot:F8W898
Length = 952
Score = 815 (292.0 bits), Expect = 2.6e-93, Sum P(2) = 2.6e-93
Identities = 195/504 (38%), Positives = 266/504 (52%)
Query: 696 EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
+E +A TH E+ P +L V A+ IPF DHNQSPRN YQ MGKQ MG + YQ R D
Sbjct: 466 DEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSD 525
Query: 756 TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
Y L PQ PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF
Sbjct: 526 NKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGF 585
Query: 816 FRSLFFRS-YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 871
++S + D +K +K+ D S G++ G KLDDDGL G ++
Sbjct: 586 AHGSVYKSEFIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQ 637
Query: 872 GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVK 928
D ++ + + Y +++ + VD + + +N G + V
Sbjct: 638 YGDPYYSY---LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVC 685
Query: 929 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
+ +R R P IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSRMTIG
Sbjct: 686 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 745
Query: 989 LIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
LIE + GK AA G DATPF + ++ + L GY G E +Y+G +G L
Sbjct: 746 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLEL 805
Query: 1045 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1104
A IF+G YYQRL+HMV DK R G +T QP GR+ GG+RFGEMERD ++AH
Sbjct: 806 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 865
Query: 1105 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK----------NSFECRGCKNKTDIV 1154
G S L +RLF+ SD HVC CG + L+K + C C I
Sbjct: 866 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTID 925
Query: 1155 QVHIPYACKLLFQELMAMAIAPRM 1178
V +PY + EL AM I ++
Sbjct: 926 TVSVPYVFRYFVAELAAMNIKVKL 949
Score = 135 (52.6 bits), Expect = 2.6e-93, Sum P(2) = 2.6e-93
Identities = 86/343 (25%), Positives = 138/343 (40%)
Query: 82 DFAETIYKISFGQI--YLSKPMMTESD-GETATLFPKAARLRNLTYSAPLYVDVTKRV-- 136
+FA +ISF + +S P + + + A ++P R R TY L D+ V
Sbjct: 65 EFAFKDERISFTILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNG 124
Query: 137 IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 196
I KG K F+G VPIM++S C L + L E E + GGYFIIN
Sbjct: 125 ISKG-----------IIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIIN 173
Query: 197 GSEKVL--IAQEKMSTNHVYV---FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR 251
G EKV+ + + + + +K R P Y + + E + V M
Sbjct: 174 GIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSA------VNMNLH 227
Query: 252 TSAKGGSSGQYI-RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM----- 305
G +I R L ++ P+ +AL +D I + + +D +
Sbjct: 228 YLENGTVMLNFIYRKELFFL----PLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVS 283
Query: 306 ELLRPSLEEAFVIQNQQVALDYIGKR-GATVGVTRDKRIKYAKEILQKEMLP-HVGTGDF 363
++LR +EE Q Q L+Y+G+ + V + A E L + + H+ +
Sbjct: 284 QMLRIVMEEGCSTQKQ--VLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSN-- 339
Query: 364 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 406
T+K Y + +L A G ED+ D N+ + G L
Sbjct: 340 --TEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQL 380
>UNIPROTKB|I3LGN1 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU914657
Ensembl:ENSSSCT00000028672 OMA:MSYEGYN Uniprot:I3LGN1
Length = 425
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 188/429 (43%), Positives = 267/429 (62%)
Query: 759 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
Y+L YPQKP+V T+ +E + F +LPAG NA VA+ YSGY+ ED++++N++S+DRGF R
Sbjct: 2 YLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRC 61
Query: 819 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
L +++ + K+ + P ++ LD DG+ PG +V + V++
Sbjct: 62 LVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLVN 121
Query: 879 KTTP-ISQDEAQG----QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
K+ P ++Q +G Q +Y +D I+ + + +++V++++NA+ +K+ +R
Sbjct: 122 KSMPTVTQIPLEGSNVPQQPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQ 179
Query: 934 VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
R P+IGDKFSSRHGQKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE +
Sbjct: 180 TRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELL 239
Query: 994 MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1053
GK G+ T F V ++ + L + GY G + + +G TG L A I+ GP
Sbjct: 240 AGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPV 299
Query: 1054 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 1113
YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ER
Sbjct: 300 YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLER 359
Query: 1114 LFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 1173
L SDA+ V VC CGL+ + C CK+ + + IPYACKLLFQEL +M
Sbjct: 360 LMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMN 413
Query: 1174 IAPRM-LTK 1181
I PR+ L+K
Sbjct: 414 IIPRLKLSK 422
>FB|FBgn0003278 [details] [associations]
symbol:RpI135 "RNA polymerase I 135kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005730 EMBL:AE014134 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 EMBL:X17298 EMBL:AY075569 PIR:JQ0354
RefSeq:NP_476708.1 UniGene:Dm.30753 ProteinModelPortal:P20028
STRING:P20028 PaxDb:P20028 EnsemblMetazoa:FBtr0078054 GeneID:33210
KEGG:dme:Dmel_CG4033 CTD:33210 FlyBase:FBgn0003278
GeneTree:ENSGT00550000074993 InParanoid:P20028 OrthoDB:EOG4ZKH24
PhylomeDB:P20028 GenomeRNAi:33210 NextBio:782449 Bgee:P20028
GermOnline:CG4033 Uniprot:P20028
Length = 1129
Score = 746 (267.7 bits), Expect = 6.8e-91, Sum P(2) = 6.8e-91
Identities = 188/514 (36%), Positives = 267/514 (51%)
Query: 689 VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
++ + +E Y D TH E+ + + A++IP PD+NQSPRN YQ MGKQ MG
Sbjct: 640 MEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCL 699
Query: 749 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
N+ + Y L P PL +++ G NAIVA+ Y+GY+ ED++I+N+
Sbjct: 700 NWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINK 759
Query: 809 SSIDRGFFRSLFFRSYRDEEKKMGTLVKED--FGRPDRSNTMGMRHGSYDKLDDDGLAPP 866
++ +RGF +++ K TL K+ F R + ++H LD DGL P
Sbjct: 760 AAYERGFAYGSIYKT------KFLTLDKKSSYFARHPHMPEL-IKH-----LDTDGLPHP 807
Query: 867 GTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQV--LLTTNADGL 924
G+++S G D G+ + Y + + E +V+ + L + +
Sbjct: 808 GSKLS-----YGSPLYCYFD---GEVATYK----VVKMDEKEDCIVESIRQLGSFDLSPK 855
Query: 925 RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 984
+ V + +R R IGDKF+SR GQKG Y ED+P+T G+ PDI+ NPH PSRM
Sbjct: 856 KMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRM 915
Query: 985 TIGQLIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHT 1040
TI +IE + GK AA G DATPF + +D K L GY G E +Y+G
Sbjct: 916 TIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVD 975
Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
GR +TA IF G +YQRL+HMV DK R G V+ T QP +GR R GG+RFGEMERD
Sbjct: 976 GREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDA 1035
Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANL----KKNSF--------ECRGCK 1148
+I+HGA+ L++RLF SD VC CG I +A L K+N CR C
Sbjct: 1036 LISHGAAFLLQDRLFHNSDKTHTLVCHKCGSI-LAPLQRIVKRNETGGLSSQPDTCRLCG 1094
Query: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
+ + + + IP++ K L EL ++ I R E
Sbjct: 1095 DNSSVSMIEIPFSFKYLVTELSSVNINARFKLNE 1128
Score = 230 (86.0 bits), Expect = 6.8e-91, Sum P(2) = 6.8e-91
Identities = 108/471 (22%), Positives = 206/471 (43%)
Query: 95 IYLSKPMMTES--DGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDF 152
I+++KP + + D T ++P +R +++YS V + G V +T
Sbjct: 78 IWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSV-------RLGWSVNGVQKTP-- 128
Query: 153 TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH 212
+ +G+VPIMLRS C L Q + +++ + GE + GG F+I G+EK++ NH
Sbjct: 129 INMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNH 188
Query: 213 VYVFKKRQ-PNKYAYVAEVRSMAESQNRPPSTM--FVRMLSRTSAKGGSSGQYIRATLPY 269
K+ ++ +++ + ++ S++ V L+ +AK S +++ L Y
Sbjct: 189 PICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFS--HVKR-LSY 245
Query: 270 IRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM-MELLRPSLEEAFVIQNQQV----- 323
+ P+ ++ + L D++I + ++ Q + ++ L E +QN+ V
Sbjct: 246 V----PVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLRE---VQNENVYTHAQ 298
Query: 324 ALDYIGK--RGATVGVTRDKRIKYAKE-ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
+IG R V + + IL++ ++ H+ T + K ++I +L
Sbjct: 299 CKSFIGNLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYE----DKFQLIVFMIQKLF 354
Query: 381 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG-----KD 435
CA G+ ++ D + + L G L VR +QK + +
Sbjct: 355 QCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSA 414
Query: 436 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGT--RAGV---SQVLNRLTYASTLSHLRR 490
V Q +A + ++ LATGN G +G+ ++ +NR+ Y +SH R
Sbjct: 415 VMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRY---MSHFRA 471
Query: 491 LN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
++ + + RQL WG +CP TP+G CGL+ +L L I++
Sbjct: 472 IHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISM 522
Score = 38 (18.4 bits), Expect = 1.2e-70, Sum P(2) = 1.2e-70
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 80 QSDFAETIYKISFGQIYLSKPMMTE 104
QS+ + + ++ +G+I+ + P M E
Sbjct: 569 QSEAEKIVDELRYGKIFGTLPQMME 593
>GENEDB_PFALCIPARUM|PF11_0358 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase,
beta subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04563
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:AE014186 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 RefSeq:XP_001348029.1
ProteinModelPortal:Q8II17 EnsemblProtists:PF11_0358:mRNA
GeneID:810905 KEGG:pfa:PF11_0358 EuPathDB:PlasmoDB:PF3D7_1134700
HOGENOM:HOG000282443 OMA:ENINIDM ProtClustDB:CLSZ2433354
Uniprot:Q8II17
Length = 1517
Score = 520 (188.1 bits), Expect = 1.5e-87, Sum P(5) = 1.5e-87
Identities = 134/345 (38%), Positives = 184/345 (53%)
Query: 697 EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 756
E + + E+ + L AS+ PF DHNQSPRN YQ M KQ MGI N +
Sbjct: 924 EQIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYTFTN 983
Query: 757 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 816
Y + PQ PLV TR E P+G NA+VAI Y+GY+ ED++I+N++S DRG F
Sbjct: 984 KIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASADRGIF 1043
Query: 817 RSLFFRSYRDEEKKMGTLVKEDFGRPDR---SNTMGMRHGSYDK----LDDDGLAPPGTR 869
R+ +++ + +K+G FG R +N ++ +Y+ L+ DGL P +
Sbjct: 1044 RTHIYKTEFIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLAYENKGKFLNKDGL--PCVQ 1101
Query: 870 VSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 929
I + +P+ +G + T + S R+ VD V + N + V
Sbjct: 1102 QK-----ITEGSPLYSYINKG--NELTTYE---SFRNHGEYFVDFVSIGKNNSN-QVAVV 1150
Query: 930 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 989
++RS R PQ+GDKF+SRHGQKG V + QEDMP+ GI PDII NPH IPSRMTIG L
Sbjct: 1151 KLRSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPDIIFNPHGIPSRMTIGML 1210
Query: 990 IECIMGKVAAHMGKEGDATPFTDVTVDNI--SKALHKCGYQMRGF 1032
IE I GK A+ GK DATPF T + + CG ++GF
Sbjct: 1211 IESICGKAASLYGKRIDATPFRKYTQQKSFNNPWIDNCG--IKGF 1253
Score = 285 (105.4 bits), Expect = 1.5e-87, Sum P(5) = 1.5e-87
Identities = 70/184 (38%), Positives = 97/184 (52%)
Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
D +D +K L GY G E +Y+G G L A IF+G YYQRL+HM DK R
Sbjct: 1325 DEKIDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRT 1384
Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
GPV LT QP +G+ + GG+R GEMERD +I+HG S + ER SD + VC CGL
Sbjct: 1385 GPVCNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGL 1444
Query: 1132 IAIANLKKNS----FECR--GCKNKTDIVQ--------VHIPYACKLLFQELMAMAIAPR 1177
I ++ N+ + R G K+K + + + IPY + L EL+ + + R
Sbjct: 1445 ILSPIMQFNTTGKIMKGRSIGGKSKMAVCKSCDVSCKIIFIPYVIRYLLNELICLNVTIR 1504
Query: 1178 MLTK 1181
+ K
Sbjct: 1505 LNMK 1508
Score = 152 (58.6 bits), Expect = 1.5e-87, Sum P(5) = 1.5e-87
Identities = 41/166 (24%), Positives = 77/166 (46%)
Query: 39 KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP--GQQSDFAETIYKISFGQIY 96
K LV+ +D F+ FI ++ I + +E P+ + + +E++ K I
Sbjct: 69 KFLVQSHIDDFNSFINVYIKNIAENIPIMEFSPQQNNYSLLNMNKNNSESV-KFFVSDIQ 127
Query: 97 LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVF 156
+ PM+ GE +P +L TY L + + ++ +E+ T +
Sbjct: 128 IKNPMIKNDKGEYRADYPYLCKLSARTYEGELLIKINRQY------KDEIASTT----IC 177
Query: 157 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
G +PIM+ S+ C L ++K+L + GE GG+F+++G KV+
Sbjct: 178 AGHIPIMIMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVI 223
Score = 116 (45.9 bits), Expect = 1.5e-87, Sum P(5) = 1.5e-87
Identities = 41/166 (24%), Positives = 72/166 (43%)
Query: 378 RLLLCALGRRAEDDRDH-Y--GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
RL +L + +ED D Y N + + L +F KL R V Y ++ N
Sbjct: 477 RLNQISLSKSSEDINDSSYQDNNDYKNESKKKLKSIFINEKEKLFRSVDNYFKELY-NDN 535
Query: 435 DVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGVSQVLNRLTYASTLSHLRRLN- 492
+ L+ +S + + TGN N ++G + + +++ R ++
Sbjct: 536 YMFLENCKSFSNTSSAILFFFKTGNISSENLHYQQKSGWVIAADEINNLRLITNFRAIHR 595
Query: 493 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
++ K+ PR+L WG +CP TP+G CGL+ +LA +I
Sbjct: 596 GTFFQDVKVLTPRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHI 641
Score = 42 (19.8 bits), Expect = 2.6e-36, Sum P(5) = 2.6e-36
Identities = 19/90 (21%), Positives = 29/90 (32%)
Query: 799 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY-DK 857
+++ S + IDR + L + D + V D G S D
Sbjct: 827 SKDGSYKYEKHKIDRKLLKILDQKKNNDSDTNTDNYVSSSEYDTDSDYDYGYDSNSDGDS 886
Query: 858 LDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
+ +SG D + TT I DE
Sbjct: 887 KSNSNFDSKSDNISGSDNNMSTTTYIDSDE 916
Score = 40 (19.1 bits), Expect = 1.5e-87, Sum P(5) = 1.5e-87
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 344 KYAKEILQKEMLPHV 358
K AK+IL+ +LPH+
Sbjct: 361 KKAKDILKYCILPHI 375
Score = 38 (18.4 bits), Expect = 7.6e-69, Sum P(3) = 7.6e-69
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 80 QSDFAETIYKISFGQ 94
+ DF T+YK+ + +
Sbjct: 696 EKDFNRTVYKLKYAK 710
>UNIPROTKB|Q8II17 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014186 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
RefSeq:XP_001348029.1 ProteinModelPortal:Q8II17
EnsemblProtists:PF11_0358:mRNA GeneID:810905 KEGG:pfa:PF11_0358
EuPathDB:PlasmoDB:PF3D7_1134700 HOGENOM:HOG000282443 OMA:ENINIDM
ProtClustDB:CLSZ2433354 Uniprot:Q8II17
Length = 1517
Score = 520 (188.1 bits), Expect = 1.5e-87, Sum P(5) = 1.5e-87
Identities = 134/345 (38%), Positives = 184/345 (53%)
Query: 697 EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 756
E + + E+ + L AS+ PF DHNQSPRN YQ M KQ MGI N +
Sbjct: 924 EQIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYTFTN 983
Query: 757 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 816
Y + PQ PLV TR E P+G NA+VAI Y+GY+ ED++I+N++S DRG F
Sbjct: 984 KIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASADRGIF 1043
Query: 817 RSLFFRSYRDEEKKMGTLVKEDFGRPDR---SNTMGMRHGSYDK----LDDDGLAPPGTR 869
R+ +++ + +K+G FG R +N ++ +Y+ L+ DGL P +
Sbjct: 1044 RTHIYKTEFIDLQKVGESSNFVFGNNIRYLNNNKNNNKNLAYENKGKFLNKDGL--PCVQ 1101
Query: 870 VSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 929
I + +P+ +G + T + S R+ VD V + N + V
Sbjct: 1102 QK-----ITEGSPLYSYINKG--NELTTYE---SFRNHGEYFVDFVSIGKNNSN-QVAVV 1150
Query: 930 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 989
++RS R PQ+GDKF+SRHGQKG V + QEDMP+ GI PDII NPH IPSRMTIG L
Sbjct: 1151 KLRSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPDIIFNPHGIPSRMTIGML 1210
Query: 990 IECIMGKVAAHMGKEGDATPFTDVTVDNI--SKALHKCGYQMRGF 1032
IE I GK A+ GK DATPF T + + CG ++GF
Sbjct: 1211 IESICGKAASLYGKRIDATPFRKYTQQKSFNNPWIDNCG--IKGF 1253
Score = 285 (105.4 bits), Expect = 1.5e-87, Sum P(5) = 1.5e-87
Identities = 70/184 (38%), Positives = 97/184 (52%)
Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
D +D +K L GY G E +Y+G G L A IF+G YYQRL+HM DK R
Sbjct: 1325 DEKIDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRT 1384
Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
GPV LT QP +G+ + GG+R GEMERD +I+HG S + ER SD + VC CGL
Sbjct: 1385 GPVCNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGL 1444
Query: 1132 IAIANLKKNS----FECR--GCKNKTDIVQ--------VHIPYACKLLFQELMAMAIAPR 1177
I ++ N+ + R G K+K + + + IPY + L EL+ + + R
Sbjct: 1445 ILSPIMQFNTTGKIMKGRSIGGKSKMAVCKSCDVSCKIIFIPYVIRYLLNELICLNVTIR 1504
Query: 1178 MLTK 1181
+ K
Sbjct: 1505 LNMK 1508
Score = 152 (58.6 bits), Expect = 1.5e-87, Sum P(5) = 1.5e-87
Identities = 41/166 (24%), Positives = 77/166 (46%)
Query: 39 KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP--GQQSDFAETIYKISFGQIY 96
K LV+ +D F+ FI ++ I + +E P+ + + +E++ K I
Sbjct: 69 KFLVQSHIDDFNSFINVYIKNIAENIPIMEFSPQQNNYSLLNMNKNNSESV-KFFVSDIQ 127
Query: 97 LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVF 156
+ PM+ GE +P +L TY L + + ++ +E+ T +
Sbjct: 128 IKNPMIKNDKGEYRADYPYLCKLSARTYEGELLIKINRQY------KDEIASTT----IC 177
Query: 157 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
G +PIM+ S+ C L ++K+L + GE GG+F+++G KV+
Sbjct: 178 AGHIPIMIMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVI 223
Score = 116 (45.9 bits), Expect = 1.5e-87, Sum P(5) = 1.5e-87
Identities = 41/166 (24%), Positives = 72/166 (43%)
Query: 378 RLLLCALGRRAEDDRDH-Y--GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
RL +L + +ED D Y N + + L +F KL R V Y ++ N
Sbjct: 477 RLNQISLSKSSEDINDSSYQDNNDYKNESKKKLKSIFINEKEKLFRSVDNYFKELY-NDN 535
Query: 435 DVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGVSQVLNRLTYASTLSHLRRLN- 492
+ L+ +S + + TGN N ++G + + +++ R ++
Sbjct: 536 YMFLENCKSFSNTSSAILFFFKTGNISSENLHYQQKSGWVIAADEINNLRLITNFRAIHR 595
Query: 493 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
++ K+ PR+L WG +CP TP+G CGL+ +LA +I
Sbjct: 596 GTFFQDVKVLTPRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHI 641
Score = 42 (19.8 bits), Expect = 2.6e-36, Sum P(5) = 2.6e-36
Identities = 19/90 (21%), Positives = 29/90 (32%)
Query: 799 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY-DK 857
+++ S + IDR + L + D + V D G S D
Sbjct: 827 SKDGSYKYEKHKIDRKLLKILDQKKNNDSDTNTDNYVSSSEYDTDSDYDYGYDSNSDGDS 886
Query: 858 LDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
+ +SG D + TT I DE
Sbjct: 887 KSNSNFDSKSDNISGSDNNMSTTTYIDSDE 916
Score = 40 (19.1 bits), Expect = 1.5e-87, Sum P(5) = 1.5e-87
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 344 KYAKEILQKEMLPHV 358
K AK+IL+ +LPH+
Sbjct: 361 KKAKDILKYCILPHI 375
Score = 38 (18.4 bits), Expect = 7.6e-69, Sum P(3) = 7.6e-69
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 80 QSDFAETIYKISFGQ 94
+ DF T+YK+ + +
Sbjct: 696 EKDFNRTVYKLKYAK 710
>TAIR|locus:2019272 [details] [associations]
symbol:NRPA2 "nuclear RNA polymerase A2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002684 GO:GO:0005829 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 IPI:IPI00518589 RefSeq:NP_564341.2
UniGene:At.16301 ProteinModelPortal:F4I366 SMR:F4I366 PRIDE:F4I366
EnsemblPlants:AT1G29940.1 GeneID:839872 KEGG:ath:AT1G29940
Uniprot:F4I366
Length = 1178
Score = 738 (264.8 bits), Expect = 2.3e-86, Sum P(4) = 2.3e-86
Identities = 171/450 (38%), Positives = 244/450 (54%)
Query: 704 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
TH EIHP+ ++ V A++ P+ DHNQSPRN YQ M KQ M QFR D Y L
Sbjct: 675 THEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQT 734
Query: 764 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
PQ P+V T+ + P G NAIVA+ ++G++ ED++I+N+SS++RG +++
Sbjct: 735 PQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQT 794
Query: 824 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 883
+ + + D G +S + ++D DGL G ++ ++
Sbjct: 795 ENIDLSDQNS--RFDSG--SKSFRRSTNKAEHFRIDADGLPSVGQKLYPDEPYCS----- 845
Query: 884 SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RFVKVRVRSVRIPQIGDK 942
DE + +R+ +R + ++ +VD V + + + +R R R P IGDK
Sbjct: 846 IYDEVTNK-TRHMKR------KGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDK 898
Query: 943 FSSRHGQKGTVGMTYTQEDMPWT-VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1001
FSSRHGQKG + DMP+ V G+ PD+I+NPHA PSRMTI L+E I K +
Sbjct: 899 FSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLH 958
Query: 1002 GKEGDATPFTDVT--------------VDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1047
GK DATPF D VD++ L + G+ G ET+Y+G+ G L
Sbjct: 959 GKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCE 1018
Query: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 1107
IF+GP YYQRL+HMV DK R G V LT QP +GR R GG+RFGEMERD ++AHGAS
Sbjct: 1019 IFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGAS 1078
Query: 1108 HFLKERLFDQSDAYRVHVCEHCGLIAIANL 1137
+ L +RL SD + VC CG + +++
Sbjct: 1079 YLLHDRLHTSSDHHIADVCSLCGSLLTSSV 1108
Score = 125 (49.1 bits), Expect = 2.3e-86, Sum P(4) = 2.3e-86
Identities = 59/236 (25%), Positives = 106/236 (44%)
Query: 69 IRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 128
I+P S ++P +++ + I+ + ++ + +S L P R ++Y+
Sbjct: 45 IKPVSVYDPNTENELS--IW-LENPLVFAPQKESFKSTSRKEPLLPFECRQAKISYTGTF 101
Query: 129 YVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
DV K +DG V + DF G+ PIML S C+L + L + E +
Sbjct: 102 MADVCF----KYNDGVVVRDKFDF-----GQFPIMLMSKLCSLKGADCRKLLKCKESTSE 152
Query: 189 QGGYFIINGSEKV---LIAQEKMSTNHVY--VFKKRQPNKYAYVAEVRSMAESQNRPPST 243
GGYFI+NG E+V +IA ++ + F+ R+ + R + + Q+ T
Sbjct: 153 MGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQSSV--T 210
Query: 244 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI--CY 297
+ + L SA+ G +I Y+ +P+ +V +AL D++I E + CY
Sbjct: 211 VKLYYLRNGSARVGF---WIVGR-EYL---LPVGLVLKALTNSCDEEIYESLNCCY 259
Score = 101 (40.6 bits), Expect = 2.3e-86, Sum P(4) = 2.3e-86
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 469 RAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KLAKPRQLHNSQWGMMCPAETPEGQACG 527
RAG + RL + LS R ++ G + R+L WG +CP TP+G CG
Sbjct: 452 RAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCG 511
Query: 528 LVKNLALMVYIT 539
L+ ++ IT
Sbjct: 512 LLNHMTRTSRIT 523
Score = 50 (22.7 bits), Expect = 2.3e-86, Sum P(4) = 2.3e-86
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1174
C CK + V +PY + L EL +M I
Sbjct: 1134 CYSCKTSKGMETVAMPYVFRYLAAELASMNI 1164
>UNIPROTKB|F8VRE2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR015712
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022248 ProteinModelPortal:F8VRE2
SMR:F8VRE2 Ensembl:ENST00000551370 ArrayExpress:F8VRE2 Bgee:F8VRE2
Uniprot:F8VRE2
Length = 676
Score = 698 (250.8 bits), Expect = 7.8e-71, Sum P(2) = 7.8e-71
Identities = 178/507 (35%), Positives = 268/507 (52%)
Query: 157 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF 216
IG++PIMLRSS C L + + +L ECP D GGYFI+ G EKV++ QE++S N + V
Sbjct: 133 IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVE 192
Query: 217 KKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPI 276
R K A A V S + SRT+ Y+R + +IPI
Sbjct: 193 ADR---KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNT--LSEDIPI 236
Query: 277 IIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGKRGAT 334
+I+F+A+G +D++I++ I + +M PSLEE Q Q AL YIG +
Sbjct: 237 VIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRR 293
Query: 335 V----GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 390
G + +I+ A+E+L +L HV +F K Y ++ R++L A G D
Sbjct: 294 QRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVD 352
Query: 391 DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTIT 448
DRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ IT
Sbjct: 353 DRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQIT 412
Query: 449 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
+G+ +++TGNW R GV+QVL+RL+Y S L + R++S + K++ PR L
Sbjct: 413 NGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQ 472
Query: 509 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEIS 563
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+ EE+S
Sbjct: 473 PSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS 532
Query: 564 PAVIPQATKIFVNGCWVGIHRDPEMLVKTXXXXXXXVDVNTEVGVVRDIRLKELRIYTDY 623
P +F+NG +G+ RD + LV T +N V + ++ + + I +D
Sbjct: 533 ---YPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDG 589
Query: 624 GRCSRPLFIVEKQRLLIKKRDIIALQQ 650
GR RP IV+KQ+ + + + L Q
Sbjct: 590 GRLCRPYIIVKKQKPAVTNKHMEELAQ 616
Score = 272 (100.8 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
Identities = 74/212 (34%), Positives = 114/212 (53%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
W ++ A+ + KGLV+Q +DSF+ FI ++EI+ + N SD A+ ++
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFI------------NVEIKKIMKANEKVTSD-ADPMW 73
Query: 89 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
+ + IY+ P + ES T + P RLR++TYSAP+ VD+ +G + +
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE---YTRG--SQRIIR 128
Query: 149 TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
+ IG++PIMLRSS C L + + +L ECP D GGYFI+ G EKV++ QE++
Sbjct: 129 NA----LPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQL 184
Query: 209 STNHVYVFKKRQPNKYAYVAEVRSMA-ESQNR 239
S N + V R K A A V S E ++R
Sbjct: 185 SKNRIIVEADR---KGAVGASVTSSTHEKKSR 213
Score = 52 (23.4 bits), Expect = 7.8e-71, Sum P(2) = 7.8e-71
Identities = 18/77 (23%), Positives = 40/77 (51%)
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH--FRQLPAGINAIVAIACYSGYNQED 802
+Y+++ R+ Y++ QKP VT + ME L +R ++ ++ Y N+E+
Sbjct: 583 VYISSDGGRL-CRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHE--SLVEYLDVNEEN 639
Query: 803 --SVIMNQSSIDRGFFR 817
++ + + +I++ F R
Sbjct: 640 DCNIALYEHTINKTFSR 656
>TIGR_CMR|CHY_2318 [details] [associations]
symbol:CHY_2318 "DNA-directed RNA polymerase, beta
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 HOGENOM:HOG000218611
OMA:FMTWEGY RefSeq:YP_361127.1 ProteinModelPortal:Q3A9Q7
STRING:Q3A9Q7 PRIDE:Q3A9Q7 GeneID:3728817 KEGG:chy:CHY_2318
PATRIC:21277705 BioCyc:CHYD246194:GJCN-2317-MONOMER Uniprot:Q3A9Q7
Length = 1132
Score = 486 (176.1 bits), Expect = 3.8e-59, Sum P(3) = 3.8e-59
Identities = 135/421 (32%), Positives = 217/421 (51%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
+L G N +VA + GYN ED++++++ + F S+ Y + + L E+
Sbjct: 679 ELALGKNVLVAYMPWEGYNYEDAILISEKLVKEDVFTSIHIEEYECDARDT-KLGPEEIT 737
Query: 841 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE--AQ--------G 890
R D N +G + LD+ G+ G V D+++GK TP + E A+ G
Sbjct: 738 R-DIPN-VG--EDALKDLDERGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFG 793
Query: 891 QASRYTRRDHSISLRHSETG-MVD-QVLLTTNADGLR-----FVKVRVRSVRIPQIGDKF 943
+ +R R D S+ + H E+G +VD +V N D L V+V + R +GDK
Sbjct: 794 EKAREVR-DTSLRVPHGESGKVVDVKVFSRENGDELSPGVNMLVRVYIAQKRKISVGDKM 852
Query: 944 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
+ RHG KG V +EDMP+ +G +I++NP +PSRM IGQ++EC +G A +G
Sbjct: 853 AGRHGNKGVVARILPEEDMPFLPDGTPVEIVLNPLGVPSRMNIGQILECHLGWAAKALGI 912
Query: 1004 EGDATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
ATP F T ++I +AL K G G + +G TG + + +G Y +L H+V
Sbjct: 913 NV-ATPIFNGATEEDIFEALRKAGLPEDGKIEVRDGRTGEPFDSRVTVGYVYMLKLAHLV 971
Query: 1063 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 1122
DDKIH+R GP ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 972 DDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSDD-- 1029
Query: 1123 VHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
+ +K +G +I + +P + K+L +EL ++ + ++LT
Sbjct: 1030 ----------VVGRVKTYEAIVKG----ENIPEPGVPESFKVLIKELQSLGLDVKVLTDN 1075
Query: 1183 D 1183
D
Sbjct: 1076 D 1076
Score = 194 (73.4 bits), Expect = 3.8e-59, Sum P(3) = 3.8e-59
Identities = 118/436 (27%), Positives = 192/436 (44%)
Query: 138 KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY-DQGGYFIIN 196
K + EE E +DFT + + + +R + E+++ LG+ P + G FI N
Sbjct: 70 KPKYSVEECKE-RDFT--YSAPLRVKVRLLNKETGEIKEQEVF-LGDFPLMTEKGTFIFN 125
Query: 197 GSEKVLIAQEKMSTNHVYVFKKRQPN-KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAK 255
G+E+V+I+Q S VY ++ PN K Y+A + NR F T
Sbjct: 126 GAERVVISQMVRSPG-VYFSEQVDPNGKKMYLATI-----IPNRGAWLEF-----ETDV- 173
Query: 256 GGSSGQYIRATLPYIRTEIPIIIVFRALGF-----VA------DKDI--LEHICYDFQDT 302
+ Y+R + R ++P+ ++ +ALG+ +A DK I LE D ++
Sbjct: 174 --NDHIYVR--IDRTR-KLPVTVLLKALGYESKGRIAELFDHDDKIIATLERDNTDSREE 228
Query: 303 QMMEL---LRPSLEEAFVIQNQQVALD---YIGKRGATVGVTRDKRIK---------YAK 347
++E+ LRP E +++ + LD + KR V R K K Y +
Sbjct: 229 ALIEIYKKLRPG--EPPTVESAKTLLDSMFFDPKRYDLGNVGRYKLFKKLNHGVLYRYLE 286
Query: 348 EILQKEMLPHVGTGDFCETKKAYY-------FGYIIHRLLLCALGRRAEDDRDHYGNKRL 400
E +KE ++ D+ K+ + Y I LL G+ DD DH GN+RL
Sbjct: 287 EDGEKEYDKYLN--DYVPVKREFIRELTNEDIIYTIRYLLGLMRGQGKVDDIDHLGNRRL 344
Query: 401 DLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNW 460
G LL FR+ ++ R VR + + + + Q I + I + +K +
Sbjct: 345 RSVGELLQNQFRIGLARMERVVRE--RMTIQDADSLTPQVLINTRPIVAAIKEFFGSSQ- 401
Query: 461 GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKLAKPRQLHNSQWGMMC 516
+SQ +++ + L+H RRL++ P G RE + R +H+S +G MC
Sbjct: 402 -----------LSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMC 450
Query: 517 PAETPEGQACGLVKNL 532
P ETPEG GL+ NL
Sbjct: 451 PIETPEGPNIGLIGNL 466
Score = 65 (27.9 bits), Expect = 3.8e-59, Sum P(3) = 3.8e-59
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 686 NDLVQAR-----LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 740
+++V AR LH E + D ++ P + V S+IPF +H+ + R + M +
Sbjct: 524 DEMVNARHGSEILHVEPSKVD---FVDVSPKQVFSVATSLIPFLEHDDANRALMGANMQR 580
Query: 741 QAMGIYVT 748
QA+ + T
Sbjct: 581 QAVPLIRT 588
Score = 61 (26.5 bits), Expect = 2.9e-45, Sum P(3) = 2.9e-45
Identities = 29/113 (25%), Positives = 50/113 (44%)
Query: 81 SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
+DF + + F YL KP + + + R+ TYSAPL V V R++ K
Sbjct: 53 TDFTGNL-SLEFLDYYLGKPKYSVEE----------CKERDFTYSAPLRVKV--RLLNK- 98
Query: 141 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF 193
+ E+ E + VF+G P+M ++ +E+ + + + G YF
Sbjct: 99 -ETGEIKEQE----VFLGDFPLMTEKG-TFIFNGAERVV--ISQMVRSPGVYF 143
Score = 49 (22.3 bits), Expect = 1.4e-43, Sum P(3) = 1.4e-43
Identities = 29/122 (23%), Positives = 52/122 (42%)
Query: 206 EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-R 264
E ++ H +P+K +V ++ Q +T + L A G + R
Sbjct: 525 EMVNARHGSEILHVEPSKVDFV----DVSPKQVFSVATSLIPFLEHDDANRALMGANMQR 580
Query: 265 ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVA 324
+P IRTE P+ V + + A KD + ++ ++E R + +E VI+N Q
Sbjct: 581 QAVPLIRTEAPV--VGTGIEYKAAKD--SGVVVLAKNPGVVE--RVTADE-IVIRNDQGQ 633
Query: 325 LD 326
+D
Sbjct: 634 ID 635
Score = 42 (19.8 bits), Expect = 2.8e-43, Sum P(3) = 2.8e-43
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 36 FEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
+E KG + + D D+ I ++ D + I + PG+
Sbjct: 198 YESKGRIAELFDHDDKIIATLERDNTDSREEALIEIYKKLRPGE 241
Score = 38 (18.4 bits), Expect = 7.3e-43, Sum P(3) = 7.3e-43
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 550 FLEEWGTENFEEISP 564
FL+E E F EISP
Sbjct: 37 FLDEGLREVFREISP 51
Score = 37 (18.1 bits), Expect = 9.3e-43, Sum P(3) = 9.3e-43
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 325 LDY-IGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
LDY +GK +V +++ Y+ + K L + TG+ E
Sbjct: 64 LDYYLGKPKYSVEECKERDFTYSAPLRVKVRLLNKETGEIKE 105
>TIGR_CMR|BA_0102 [details] [associations]
symbol:BA_0102 "DNA-directed RNA polymerase, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 RefSeq:NP_842670.1
RefSeq:YP_026388.1 RefSeq:YP_052605.1 ProteinModelPortal:Q81VT8
IntAct:Q81VT8 PRIDE:Q81VT8 DNASU:1086075
EnsemblBacteria:EBBACT00000010978 EnsemblBacteria:EBBACT00000018107
EnsemblBacteria:EBBACT00000023445 GeneID:1086075 GeneID:2820986
GeneID:2850888 KEGG:ban:BA_0102 KEGG:bar:GBAA_0102 KEGG:bat:BAS0102
HOGENOM:HOG000218611 OMA:FMTWEGY BioCyc:BANT260799:GJAJ-113-MONOMER
BioCyc:BANT261594:GJ7F-115-MONOMER Uniprot:Q81VT8
Length = 1177
Score = 451 (163.8 bits), Expect = 7.0e-55, Sum P(5) = 7.0e-55
Identities = 127/423 (30%), Positives = 214/423 (50%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
+L G N +V + GYN ED++IM++ + + S+ Y E + L E+
Sbjct: 751 ELALGRNVLVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEYESEARDT-KLGPEEIT 809
Query: 841 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP--ISQDEAQ--------G 890
R D N +G + LD+ G+ G V D+++GK TP +++ A+ G
Sbjct: 810 R-DIPN-VG--EDALRNLDERGIIRVGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFG 865
Query: 891 QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF---VKVRVRS--VRIPQI--GDKF 943
+ +R R D S+ + H G++ V + DG V VR+ V+ +I GDK
Sbjct: 866 EKAREVR-DTSLRVPHGGGGIILDVKVFNREDGDELPPGVNQLVRAYIVQKRKISEGDKM 924
Query: 944 SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
+ RHG KG + +EDMP+ +G DI++NP +PSRM IGQ++E +G A ++G
Sbjct: 925 AGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARYLGI 984
Query: 1004 EGDATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
ATP F +++ + + G +Y+G TG + +G Y +L HMV
Sbjct: 985 H-IATPVFDGAREEDVWGTIEEAGMANDAKTILYDGRTGEPFDNRVSVGVMYMIKLAHMV 1043
Query: 1063 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 1122
DDK+H+R GP ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1044 DDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDD-- 1101
Query: 1123 VHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
I +K +G ++ + +P + K+L +EL ++ + +M++ +
Sbjct: 1102 ----------VIGRVKTYEAIVKG----ENVPEPGVPESFKVLIKELQSLGMDVKMMSSD 1147
Query: 1183 DTK 1185
DT+
Sbjct: 1148 DTE 1150
Score = 149 (57.5 bits), Expect = 7.0e-55, Sum P(5) = 7.0e-55
Identities = 59/212 (27%), Positives = 95/212 (44%)
Query: 332 GATVGVTRDKRIK-YAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL-----LLCALG 385
G G + IK YA E + ++ +G + K G I+ + LL +G
Sbjct: 336 GVVEGDVELQSIKIYAPESEGERVINVIGNANITRDVKHITPGDILASISYFFNLLYKVG 395
Query: 386 RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
DD DH GN+RL G LL FR+ ++ R VR + + + + Q I +
Sbjct: 396 DT--DDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMS--IQDTNAITPQALINIR 451
Query: 446 TITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKL 501
+ + +K + +SQ +++ + L+H RRL++ P G RE
Sbjct: 452 PVIAAIKEFFGSSQ------------LSQFMDQTNPLAELTHKRRLSALGPGGLTRERAG 499
Query: 502 AKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
+ R +H S +G MCP ETPEG GL+ +L+
Sbjct: 500 FEVRDVHYSHYGRMCPIETPEGPNIGLINSLS 531
Score = 85 (35.0 bits), Expect = 7.0e-55, Sum P(5) = 7.0e-55
Identities = 35/119 (29%), Positives = 60/119 (50%)
Query: 176 EKDLTELGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 234
E+D+ +G+ P + G F+ING+E+V+++Q S + Y K + K + A V
Sbjct: 108 EQDVF-MGDFPLMTETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNGKRGFTATV---- 162
Query: 235 ESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293
NR + T AK Y+R + R ++P+ ++ RALGF +D++I E
Sbjct: 163 -IPNRGAWLEY-----ETDAK---DVVYVR--IDRTR-KLPVTVLLRALGFGSDQEITE 209
Score = 62 (26.9 bits), Expect = 7.0e-55, Sum P(5) = 7.0e-55
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 120 RNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 163
R++TY+APL V V R+I K + EV E QD VF+G P+M
Sbjct: 84 RDVTYAAPLRVKV--RLINK--ETGEVKE-QD---VFMGDFPLM 119
Score = 48 (22.0 bits), Expect = 7.0e-55, Sum P(5) = 7.0e-55
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 687 DLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
D+V AR E + + ++ P ++ + IPF +++ S R + M +QA+
Sbjct: 590 DIV-ARFRGENIVTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAV 647
Score = 38 (18.4 bits), Expect = 4.2e-37, Sum P(3) = 4.2e-37
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 550 FLEEWGTENFEEISP 564
FL+E E F++ISP
Sbjct: 40 FLDEGLREMFQDISP 54
>TIGR_CMR|DET_0603 [details] [associations]
symbol:DET_0603 "DNA-directed RNA polymerase, beta
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 OMA:FMTWEGY
RefSeq:YP_181345.1 ProteinModelPortal:Q3Z8V4 STRING:Q3Z8V4
PRIDE:Q3Z8V4 GeneID:3230060 KEGG:det:DET0603 PATRIC:21608277
BioCyc:DETH243164:GJNF-604-MONOMER Uniprot:Q3Z8V4
Length = 1272
Score = 280 (103.6 bits), Expect = 2.8e-48, Sum P(6) = 2.8e-48
Identities = 83/262 (31%), Positives = 132/262 (50%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE--EKKMGTLVKED 838
+L G N +VA + G+N ED++I+++ + F S+ + E + K+G E+
Sbjct: 721 ELALGQNCVVAFMSWQGFNYEDAIILSERLVREDAFTSIHITKHELEAHDTKLGG---EE 777
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ--------- 889
R D N +G S +LD+DG+ G V +D+++GK TP + E
Sbjct: 778 ITR-DIPN-VGEE--SLRELDEDGIIRIGAEVGPDDILVGKITPKGETELSAEEKLLRAI 833
Query: 890 -GQASRYTRRDHSISLRHSETGMVDQVLLTT--NADGL-----RFVKVRVRSVRIPQIGD 941
G+ +R + D S+ + H E G V V + + N D L ++V+V V R +GD
Sbjct: 834 FGEKAREVK-DTSLRMPHGEWGKVINVRVFSRENGDDLPARVNKWVQVWVAQKRKVSVGD 892
Query: 942 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1001
K + RHG KG + + EDMP+ +G D+++NP +PSRM +GQ++E +G A H+
Sbjct: 893 KLAGRHGNKGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGW-AGHL 951
Query: 1002 GKEGDATPFTDVTVDN-ISKAL 1022
ATP D D I AL
Sbjct: 952 LGFRVATPVFDGADDTAIEDAL 973
Score = 194 (73.4 bits), Expect = 2.8e-48, Sum P(6) = 2.8e-48
Identities = 49/152 (32%), Positives = 84/152 (55%)
Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
G + +G TG + +G Y +L H+V+DK+H+R GP ++++QP G+++ GG
Sbjct: 1067 GKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDKVHARATGPYSLISQQPLGGKAQFGG 1126
Query: 1091 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNK 1150
RFGEME M A+G +H L+E L +SD IA K ++E K +
Sbjct: 1127 QRFGEMEVWAMYAYGTAHNLQEMLTIKSDD-------------IAGRAK-AYESI-VKGE 1171
Query: 1151 TDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
D++Q +P + K+L +EL ++ +A ++ +E
Sbjct: 1172 -DVIQPGVPESFKVLVKELQSLGLAVEVINEE 1202
Score = 140 (54.3 bits), Expect = 2.8e-48, Sum P(6) = 2.8e-48
Identities = 47/163 (28%), Positives = 80/163 (49%)
Query: 375 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
II R+++ G+ DD DH GN+R+ G L+ FR+ +L R R + + N +
Sbjct: 312 IIKRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRIGLVRLERVARERMS--IVNLE 369
Query: 435 DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS- 493
V + + + S +K G++ +SQ +++ + +++ RRL++
Sbjct: 370 VVTPSALVNIRPVVSAVKEFFG----------GSQ--LSQFMDQTNPLAEITNKRRLSAM 417
Query: 494 -PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
P G RE R +H S +G +CP ETPEG GL+ +LA
Sbjct: 418 GPGGLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLA 460
Score = 67 (28.6 bits), Expect = 2.8e-48, Sum P(6) = 2.8e-48
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 686 NDLVQARLHPEEAYA----DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741
++ ++ARL E Y + + ++ P I V AS+IPF +H+ + R + M +Q
Sbjct: 566 DERIEARL--AERYVIEPPEKIDYMDVSPKQIFSVAASLIPFLEHDDANRALMGANMQRQ 623
Query: 742 AM 743
A+
Sbjct: 624 AV 625
Score = 58 (25.5 bits), Expect = 2.8e-48, Sum P(6) = 2.8e-48
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 120 RNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 163
R+ TYS PLYV R+I K GE + E D +F G +P+M
Sbjct: 87 RDQTYSVPLYVKA--RLIVKT-TGE-IKEPFD---LFFGDIPLM 123
Score = 51 (23.0 bits), Expect = 2.8e-48, Sum P(6) = 2.8e-48
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 271 RTEIPIIIVFRALGFVADKDIL 292
R +IP+ + RA+G+ D DIL
Sbjct: 192 RRKIPVSTLLRAIGYSDDLDIL 213
Score = 39 (18.8 bits), Expect = 1.9e-45, Sum P(5) = 1.9e-45
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 285 FVADKDILEHICYDFQDTQMME 306
FV ++ LE I Y+F++ ++ E
Sbjct: 60 FVGNRLELEFIGYEFREPRLSE 81
>TIGR_CMR|CBU_0231 [details] [associations]
symbol:CBU_0231 "DNA-directed RNA polymerase, beta
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CP001019 EMBL:U86688 GenomeReviews:CP001019_GR eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_002304193.1 ProteinModelPortal:B6J270 STRING:B6J270
PRIDE:B6J270 GeneID:7014190 KEGG:cbg:CbuG_1774 PATRIC:17914647
OMA:HANEEIT Uniprot:B6J270
Length = 1375
Score = 198 (74.8 bits), Expect = 7.0e-46, Sum P(7) = 7.0e-46
Identities = 40/110 (36%), Positives = 64/110 (58%)
Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 1069
F T + I + L G +Y+G TG++ + +G Y +L H+VDDK+H+R
Sbjct: 1220 FDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYMLKLNHLVDDKMHAR 1279
Query: 1070 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1280 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1329
Score = 169 (64.5 bits), Expect = 7.0e-46, Sum P(7) = 7.0e-46
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 924 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
++ VKV + R Q GDK + RHG KG + EDMP+ +G DI++NP +PSR
Sbjct: 1082 IKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSR 1141
Query: 984 MTIGQLIECIMGKVAAHMGKE 1004
M IGQ++E +G A +GK+
Sbjct: 1142 MNIGQVLETHLGWAAKGLGKK 1162
Score = 132 (51.5 bits), Expect = 7.0e-46, Sum P(7) = 7.0e-46
Identities = 48/185 (25%), Positives = 87/185 (47%)
Query: 385 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDNGKDVNLQFAIK 443
G+ DD DH GN+R+ G + FR+ ++ R V+ + V+N +L +
Sbjct: 459 GKGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKDRLSLADVENLMPQDL---VN 515
Query: 444 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REG 499
AK +++ +K + +SQ +++ S ++H RR+++ P G RE
Sbjct: 516 AKPVSAAIKEFFGSSQ------------LSQFMDQNNPLSEITHKRRVSALGPGGLTRER 563
Query: 500 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT-VGSAAYPILEFLEEWGTEN 558
+ R +H + +G +CP ETPEG GL+ +LA+ G P + ++ T+
Sbjct: 564 AGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYGFLETPYRKVVDRVVTDE 623
Query: 559 FEEIS 563
E +S
Sbjct: 624 TEYLS 628
Score = 112 (44.5 bits), Expect = 7.0e-46, Sum P(7) = 7.0e-46
Identities = 27/104 (25%), Positives = 54/104 (51%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 838
+L G N +VA ++GYN EDS+++++ ++ F ++ + + + K+G E+
Sbjct: 815 ELALGQNLLVAFMPWNGYNFEDSILISERLVEEDRFTTIHIQEFTCVARDTKLGP---EE 871
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
S+ + + KLD+ G+ G V+ D+++GK TP
Sbjct: 872 I----TSDIPNVGESALAKLDESGIVHIGAEVNAGDILVGKVTP 911
Score = 90 (36.7 bits), Expect = 7.0e-46, Sum P(7) = 7.0e-46
Identities = 35/149 (23%), Positives = 73/149 (48%)
Query: 41 LVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKP 100
L+ Q++S+ +F+Q +I E + + G + F ++++ I+ Y
Sbjct: 39 LLETQIESYRKFLQK------------DIAAEKREDNGLHAAF-KSVFPITSYSGYAVLE 85
Query: 101 MMTESDGETATLFP-KAARLRNLTYSAPLYVDVTKRVI--KKGHDGEEVTETQDFTKVFI 157
+ S G +TLF + +LR LTY+APL V++ + VI K+ G++ + +V++
Sbjct: 86 YVGYSLGGESTLFDVEECKLRGLTYAAPLKVNM-RLVIYDKEAPAGKKAIKDIKEQEVYM 144
Query: 158 GKVPIMLRSSYCTLYQNSEKDLTELGECP 186
G++P+M + + +++L P
Sbjct: 145 GEIPLMTETGSLVINGTERVVVSQLHRSP 173
Score = 74 (31.1 bits), Expect = 7.0e-46, Sum P(7) = 7.0e-46
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 686 NDLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
+DL+ R E D + ++ P I+ V A++IPF +H+ + R S M +QA+
Sbjct: 652 DDLISCRYKGEFTLTTPDKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAV 711
Score = 60 (26.2 bits), Expect = 7.6e-43, Sum P(7) = 7.6e-43
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 177 KDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN---KYAYVA 228
KD+ E +GE P + G +ING+E+V+++Q S + K + + K Y A
Sbjct: 135 KDIKEQEVYMGEIPLMTETGSLVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKLLYSA 194
Query: 229 EV----RSMAESQNRPPSTMFVRM 248
V S + + P +FVR+
Sbjct: 195 RVIPYRGSWLDFEFDPKDCLFVRI 218
Score = 50 (22.7 bits), Expect = 3.4e-23, Sum P(3) = 3.4e-23
Identities = 39/157 (24%), Positives = 65/157 (41%)
Query: 36 FEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH----NPGQQS----DFAETI 87
FE+ L+ ++L D F +QE + D ++ PE N G+ + D + +
Sbjct: 834 FEDSILISERLVEEDRFTTIHIQEFTCVARDTKLGPEEITSDIPNVGESALAKLDESGIV 893
Query: 88 Y---KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 144
+ +++ G I + K +T GET L P+ LR + V T + G G
Sbjct: 894 HIGAEVNAGDILVGK--VTPK-GETQ-LTPEEKLLRAIFGEKASDVKDTSLRVTPGITGT 949
Query: 145 EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 181
V + + FT+ + K L L EKDL +
Sbjct: 950 -VIDVRIFTREGVKKDERTLEIEKAEL-SKVEKDLND 984
Score = 49 (22.3 bits), Expect = 2.6e-34, Sum P(5) = 2.6e-34
Identities = 21/95 (22%), Positives = 38/95 (40%)
Query: 188 DQGGYFII----NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
++G Y+I N EK + + +S + F P+K Y+ ++ Q +
Sbjct: 631 EEGDYYIAQANTNVDEKGRLVDDLISCRYKGEFTLTTPDKINYM----DVSPRQIVSVAA 686
Query: 244 MFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPII 277
+ L A G + R +P IR E P++
Sbjct: 687 ALIPFLEHDDANRALMGSNMQRQAVPTIRPETPLV 721
Score = 44 (20.5 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 718 ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH- 776
++ I +P+ ++ N +GK+ + I T Y +Y + QK + + ++
Sbjct: 11 SATISYPEKRRARVN-----LGKREVEILKTPYLLETQIESYRKFL-QKDIAAEKREDNG 64
Query: 777 LHFRQLPAGINAIVAIACYSGY 798
LH A ++ I YSGY
Sbjct: 65 LH-----AAFKSVFPITSYSGY 81
Score = 42 (19.8 bits), Expect = 7.0e-46, Sum P(7) = 7.0e-46
Identities = 27/119 (22%), Positives = 51/119 (42%)
Query: 271 RTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGK 330
R ++P ++ RALG YD + Q++++ + F + + V LD I +
Sbjct: 221 RRKLPATVILRALG------------YDTE--QILDMFYKT--NHFHLNQETVTLDLIPQ 264
Query: 331 R--GATVGVT-RDKRIKYAKEILQKEMLPHVGTGDFCETKKA-----YYFGYIIHRLLL 381
R G V +DK+ K E ++ H+ + E K Y +G +I + ++
Sbjct: 265 RLRGELAVVEIKDKKGKVIVEANRRISARHIRLIEKAEINKLELPDDYLYGKVIGKTII 323
Score = 41 (19.5 bits), Expect = 8.8e-46, Sum P(7) = 8.8e-46
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 200 KVLI-AQEKMSTNHVYVFKKRQPNK 223
KV++ A ++S H+ + +K + NK
Sbjct: 281 KVIVEANRRISARHIRLIEKAEINK 305
Score = 41 (19.5 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 247 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
+M R KG S +PY+ P+ IV LG
Sbjct: 1100 KMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLG 1137
>TIGR_CMR|CJE_0528 [details] [associations]
symbol:CJE_0528 "DNA-directed RNA polymerase, beta
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_178546.1 ProteinModelPortal:Q5HVY9
STRING:Q5HVY9 GeneID:3231289 KEGG:cjr:CJE0528 PATRIC:20042778
BioCyc:CJEJ195099:GJC0-543-MONOMER Uniprot:Q5HVY9
Length = 1378
Score = 222 (83.2 bits), Expect = 9.6e-46, Sum P(6) = 9.6e-46
Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 1007 ATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
+TP F V ++ SK M G +Y+G TG ++ + +G Y +L H+VD+K
Sbjct: 1214 STPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMYMLKLHHLVDEK 1273
Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
+H+R GP ++T+QP G++ GG RFGEME + A+GA+H L+E L +SD
Sbjct: 1274 VHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLTIKSD 1327
Score = 167 (63.8 bits), Expect = 9.6e-46, Sum P(6) = 9.6e-46
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 924 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
++ VKV + + R ++GDK + RHG KG V + DMP+ G + DI +NP +PSR
Sbjct: 1076 IKLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSR 1135
Query: 984 MTIGQLIECIMGKVAAHMGKE 1004
M IGQ++E +G V +G +
Sbjct: 1136 MNIGQILESHLGLVGLRLGDQ 1156
Score = 149 (57.5 bits), Expect = 9.6e-46, Sum P(6) = 9.6e-46
Identities = 51/156 (32%), Positives = 75/156 (48%)
Query: 385 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR-AYVQKCVDNGKDVNLQFAIK 443
G+ DDRDH GN+R+ G LL + K+ + +R + D K + I
Sbjct: 451 GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDL-IN 509
Query: 444 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
K IT+ + TG GQ +SQ +++ S ++H RRL S +G EG L K
Sbjct: 510 PKMITTTI-IEFFTG--GQ---------LSQFMDQTNPLSEVTHKRRL-SALG-EGGLVK 555
Query: 504 PR------QLHNSQWGMMCPAETPEGQACGLVKNLA 533
R +H + +G +CP ETPEGQ GL+ L+
Sbjct: 556 ERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLS 591
Score = 104 (41.7 bits), Expect = 9.6e-46, Sum P(6) = 9.6e-46
Identities = 26/102 (25%), Positives = 52/102 (50%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
+L G NA++A ++GYN ED++++++ I F S+ E +++ ++E
Sbjct: 804 ELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKDGIEEI-- 861
Query: 841 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
D N ++ LD+ G+A GT + +++GK +P
Sbjct: 862 TKDIPN---VKEEDVAHLDESGIAKIGTHIKPGMILVGKVSP 900
Score = 68 (29.0 bits), Expect = 9.6e-46, Sum P(6) = 9.6e-46
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 687 DLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
+ V+AR E A + ++ +++GV AS+IPF +H+ + R S M +QA+
Sbjct: 647 EFVEARQDGETILARREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAV 705
Score = 62 (26.9 bits), Expect = 9.6e-46, Sum P(6) = 9.6e-46
Identities = 32/112 (28%), Positives = 52/112 (46%)
Query: 193 FIINGSEKVLIAQEKMSTNHVYVFKKRQP----NKYAYVAEVRSMAESQNRPPSTMFVRM 248
FIING E+V++ Q S +FK+ + NK Y A++ +R F
Sbjct: 140 FIINGVERVVVNQLHRSPG--VIFKEEESSTVANKLVYTAQI-----IPDRGSWLYF--- 189
Query: 249 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ 300
AK Y+R R ++P+ ++FRALG+ +DI++ + Y Q
Sbjct: 190 --EYDAK---DVLYVRINK---RRKVPVTMLFRALGY-KKQDIIK-LFYPIQ 231
>TIGR_CMR|ECH_0952 [details] [associations]
symbol:ECH_0952 "DNA-directed RNA polymerase, beta
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
EMBL:AF389473 RefSeq:YP_507740.1 ProteinModelPortal:Q8KWX2
STRING:Q8KWX2 PRIDE:Q8KWX2 GeneID:3927386 KEGG:ech:ECH_0952
PATRIC:20577286 BioCyc:ECHA205920:GJNR-955-MONOMER Uniprot:Q8KWX2
Length = 1380
Score = 195 (73.7 bits), Expect = 7.9e-45, Sum P(7) = 7.9e-45
Identities = 44/114 (38%), Positives = 65/114 (57%)
Query: 1007 ATPFTDVTVDN-ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
A P + D+ IS L + G +Y+G G + + +G Y +L H+VDDK
Sbjct: 1211 AAPVFEGPKDSQISNLLRLADLDVSGQVDLYDGRIGEKFDRKVTVGYIYMLKLHHLVDDK 1270
Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
IH+R GP ++T+QP G+S GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1271 IHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1324
Score = 161 (61.7 bits), Expect = 7.9e-45, Sum P(7) = 7.9e-45
Identities = 38/103 (36%), Positives = 57/103 (55%)
Query: 924 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
L VKV V Q GDK + RHG KG + EDMP+ +G DII+N +PSR
Sbjct: 1076 LCIVKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLGVPSR 1135
Query: 984 MTIGQLIECIMGKVAAHMGKE-GDATPFTD-VTVDNISKALHK 1024
M +GQ++E +G + ++GK+ G D +TV ++ L++
Sbjct: 1136 MNVGQILETHLGWASVNLGKKIGHILDNLDELTVSHLRNFLYQ 1178
Score = 159 (61.0 bits), Expect = 7.9e-45, Sum P(7) = 7.9e-45
Identities = 49/170 (28%), Positives = 83/170 (48%)
Query: 374 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDN 432
++I +L+L G + DD DH GN+R+ G + FR+ +L R + Y+ DN
Sbjct: 451 HVIKKLVLLRDGEGSVDDIDHLGNRRVRSVGEFIENQFRIGILRLERMIMDYMSSVNFDN 510
Query: 433 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
+ + K + + LK ++ +SQ +++ S ++H RRL+
Sbjct: 511 AMPCDF---VNPKVLATVLKDFFSSSQ------------LSQFMDQTNPLSEVTHKRRLS 555
Query: 493 S--PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
+ P G RE + R +H + +G +CP ETPEGQ GL+ +LA+ I
Sbjct: 556 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYARI 605
Score = 121 (47.7 bits), Expect = 7.9e-45, Sum P(7) = 7.9e-45
Identities = 30/102 (29%), Positives = 48/102 (47%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
+L G N +VA + GYN EDS++++ + + F S+ + + TL E
Sbjct: 816 ELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKDVFTSIHIEEFECVVRDT-TLGPEKIM 874
Query: 841 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
R + + S LDD G+ G VS D+++GK TP
Sbjct: 875 R----SVPDINEDSLSHLDDVGIVNVGAEVSAGDILVGKVTP 912
Score = 67 (28.6 bits), Expect = 7.9e-45, Sum P(7) = 7.9e-45
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 705 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
+ ++ P I+ V AS+IPF ++N + R S M +QA+
Sbjct: 676 YIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAV 714
Score = 58 (25.5 bits), Expect = 7.9e-45, Sum P(7) = 7.9e-45
Identities = 24/87 (27%), Positives = 48/87 (55%)
Query: 120 RNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDL 179
R +T+S P+ + V + ++ K +EV+ F +V K + +S ++ E+++
Sbjct: 97 RGITFSVPIRI-VLRFIVWKV---QEVS----FKEV---KYVVDEETSEKSIKYIKEQEV 145
Query: 180 TELGECP-YDQGGYFIINGSEKVLIAQ 205
+ +G+ P G FIING E+V+++Q
Sbjct: 146 S-IGDLPTMTSHGTFIINGIERVIVSQ 171
Score = 47 (21.6 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 897 RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
+R +SL G+ + +L T D +R+VK V +P + D+F
Sbjct: 224 KRKLPVSLLLRALGLSNNDILDTFYDKIRYVKSEKGWV-VPFVADRF 269
Score = 46 (21.3 bits), Expect = 7.9e-45, Sum P(7) = 7.9e-45
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 271 RTEIPIIIVFRALGFVADKDILEHICYD 298
+ ++P+ ++ RALG +++ DIL+ YD
Sbjct: 224 KRKLPVSLLLRALG-LSNNDILDTF-YD 249
Score = 42 (19.8 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 247 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
+M R KG S +PY+ P+ I+ +LG
Sbjct: 1094 KMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLG 1131
Score = 40 (19.1 bits), Expect = 7.5e-33, Sum P(7) = 7.5e-33
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 340 DKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH--RLLLCALGRRAEDDRDHYG 396
DK + Y + + + G +T KA++ G R L +GR +D H G
Sbjct: 378 DKNVSYEDALFEIYKVLRSGESPSLDTIKAFFDGLFFEKERYDLSTVGRIKLND--HLG 434
Score = 37 (18.1 bits), Expect = 4.8e-22, Sum P(5) = 4.8e-22
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 810 SID--RGFFRSLFFRSYRDEEKKMGTLVKED 838
S+D + FF LFF R + +G + D
Sbjct: 401 SLDTIKAFFDGLFFEKERYDLSTVGRIKLND 431
>UNIPROTKB|P0A680 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0046677 GO:GO:0006351
EMBL:BX842574 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY EMBL:L27989 EMBL:U12205 EMBL:L05910 EMBL:AF143771
EMBL:AF146567 EMBL:AF147030 EMBL:AF147031 EMBL:AF147033
EMBL:AF147034 EMBL:S71246 PIR:F70535 RefSeq:NP_215181.1
RefSeq:NP_335107.1 RefSeq:YP_006514009.1 ProteinModelPortal:P0A680
SMR:P0A680 IntAct:P0A680 PRIDE:P0A680
EnsemblBacteria:EBMYCT00000001730 EnsemblBacteria:EBMYCT00000071499
GeneID:13318554 GeneID:888164 GeneID:925979 KEGG:mtc:MT0695
KEGG:mtu:Rv0667 KEGG:mtv:RVBD_0667 PATRIC:18123249
TubercuList:Rv0667 BindingDB:P0A680 ChEMBL:CHEMBL2006
Uniprot:P0A680
Length = 1178
Score = 256 (95.2 bits), Expect = 1.7e-44, Sum P(5) = 1.7e-44
Identities = 75/246 (30%), Positives = 119/246 (48%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK--KMGTLVKED 838
++ G N +VAI + G+N ED++I++ ++ S+ + + + K+G E+
Sbjct: 712 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGA---EE 768
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ--------- 889
R D N + LD+ G+ G V D+++GK TP + E
Sbjct: 769 ITR-DIPN---ISDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAI 824
Query: 890 -GQASRYTRRDHSISLRHSETGMVDQVLLTTNAD------GLR-FVKVRVRSVRIPQIGD 941
G+ +R R D S+ + H E+G V + + + D G+ V+V V R GD
Sbjct: 825 FGEKAREVR-DTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGD 883
Query: 942 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1001
K + RHG KG +G EDMP+ +G DII+N H +P RM IGQ++E +G AH
Sbjct: 884 KLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGW-CAHS 942
Query: 1002 GKEGDA 1007
G + DA
Sbjct: 943 GWKVDA 948
Score = 186 (70.5 bits), Expect = 1.7e-44, Sum P(5) = 1.7e-44
Identities = 41/99 (41%), Positives = 61/99 (61%)
Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
G +++G +G + +G Y +L H+VDDKIH+R GP ++T+QP G+++ GG
Sbjct: 1006 GKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1065
Query: 1091 LRFGEMERDCMIAHGASHFLKERLFDQSD--AYRVHVCE 1127
RFGEME M A+GA++ L+E L +SD RV V E
Sbjct: 1066 QRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYE 1104
Score = 148 (57.2 bits), Expect = 1.7e-44, Sum P(5) = 1.7e-44
Identities = 48/155 (30%), Positives = 75/155 (48%)
Query: 390 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
DD DH+GN+RL G L+ R+ ++ R VR + + + + Q I + + +
Sbjct: 368 DDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRE--RMTTQDVEAITPQTLINIRPVVA 425
Query: 450 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKLAKPR 505
+K T +SQ +++ S L+H RRL++ P G RE + R
Sbjct: 426 AIKEFFGTSQ------------LSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVR 473
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
+H S +G MCP ETPEG GL+ +L+ VY V
Sbjct: 474 DVHPSHYGRMCPIETPEGPNIGLIGSLS--VYARV 506
Score = 66 (28.3 bits), Expect = 1.7e-44, Sum P(5) = 1.7e-44
Identities = 62/269 (23%), Positives = 118/269 (43%)
Query: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTM-QEIVDESADIEIRPESQHNPGQQSDFAET 86
++A + E GL+ Q DSF+ I + +E E D+ NP E
Sbjct: 40 SFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGDV--------NP--VGGLEEV 89
Query: 87 IYKISFGQIYLSKPMMTESDGETATL-FP-KAARLRNLTYSAPLYVDVTKRVIKKGHDGE 144
+Y++S + + ++ SD + P + +++TY+APL+V T I + GE
Sbjct: 90 LYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFV--TAEFINN-NTGE 146
Query: 145 EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF---IINGSEKV 201
++T VF+G P+M + +++L P G YF I ++K
Sbjct: 147 IKSQT-----VFMGDFPMMTEKGTFIINGTERVVVSQLVRSP---GVYFDETIDKSTDKT 198
Query: 202 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA----KGG 257
L + + + + ++ + +K V VR + + R P T+ ++ L TS + G
Sbjct: 199 LHSVKVIPSRGAWL--EFDVDKRDTVG-VR--IDRKRRQPVTVLLKALGWTSEQIVERFG 253
Query: 258 SSGQYIRATLPY---IRTEIPIIIVFRAL 283
S + +R+TL + T+ ++ ++R L
Sbjct: 254 FS-EIMRSTLEKDNTVGTDEALLDIYRKL 281
Score = 54 (24.1 bits), Expect = 1.7e-44, Sum P(5) = 1.7e-44
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 705 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
+ ++ P ++ V ++IPF +H+ + R + M +QA+
Sbjct: 578 YMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 616
Score = 47 (21.6 bits), Expect = 1.5e-42, Sum P(5) = 1.5e-42
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 275 PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGK 330
P+ ++ +ALG+ +++ I+E + F E++R +LE+ + + LD K
Sbjct: 233 PVTVLLKALGWTSEQ-IVER--FGFS-----EIMRSTLEKDNTVGTDEALLDIYRK 280
Score = 47 (21.6 bits), Expect = 4.0e-33, Sum P(4) = 4.0e-33
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 472 VSQVLNRLTYASTLSHL-RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 530
VS + LT H+ + NSPI +G+ +PR L + G + P + +
Sbjct: 524 VSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVRRKAGEV--EYVPSSEVDYMDV 581
Query: 531 NLALMVYITVGSAAYPILE 549
+ MV +V +A P LE
Sbjct: 582 SPRQMV--SVATAMIPFLE 598
Score = 46 (21.3 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 215 VFKKRQPNKYAYV--AEVRSMAESQNRPPS--TMFVRMLSRTSAKGGSSGQYI-RATLPY 269
V +R+ + YV +EV M S + S T + L A G + R +P
Sbjct: 559 VLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPL 618
Query: 270 IRTEIPII 277
+R+E P++
Sbjct: 619 VRSEAPLV 626
Score = 38 (18.4 bits), Expect = 1.2e-41, Sum P(5) = 1.2e-41
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 311 SLEEAFVIQNQQVALDY-IGKRGATVGVTRDKRIKYAKEILQKEM 354
+L VI ++ L++ + KR TVGV D++ + +L K +
Sbjct: 198 TLHSVKVIPSRGAWLEFDVDKRD-TVGVRIDRKRRQPVTVLLKAL 241
>UNIPROTKB|P60281 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:246196 "Mycobacterium smegmatis str. MC2 155" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01321 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 InterPro:IPR019462
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF10385 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:CP000480 EMBL:CP001663 GenomeReviews:CP000480_GR GO:GO:0006351
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
HOGENOM:HOG000218611 OMA:FMTWEGY EMBL:AJ605718
RefSeq:YP_006566096.1 RefSeq:YP_885753.1 ProteinModelPortal:P60281
IntAct:P60281 STRING:P60281 EnsemblBacteria:EBMYCT00000043175
GeneID:13429143 GeneID:4535217 KEGG:msm:MSMEG_1367 PATRIC:18075189
BioCyc:MSME246196:GJ4Y-1367-MONOMER Uniprot:P60281
Length = 1169
Score = 249 (92.7 bits), Expect = 1.9e-43, Sum P(6) = 1.9e-43
Identities = 72/237 (30%), Positives = 115/237 (48%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK--KMGTLVKED 838
++ G N +VAI + G+N ED++I++ ++ S+ + + + K+G E+
Sbjct: 703 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGA---EE 759
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ--------- 889
R D N + LD+ G+ G V D+++GK TP + E
Sbjct: 760 ITR-DIPN---VSDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAI 815
Query: 890 -GQASRYTRRDHSISLRHSETGMVDQVLLTTNAD------GLR-FVKVRVRSVRIPQIGD 941
G+ +R R D S+ + H E+G V + + + D G+ V+V V R GD
Sbjct: 816 FGEKAREVR-DTSLKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGD 874
Query: 942 KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
K + RHG KG +G EDMP+ +G DII+N H +P RM IGQ++E +G VA
Sbjct: 875 KLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVA 931
Score = 191 (72.3 bits), Expect = 1.9e-43, Sum P(6) = 1.9e-43
Identities = 42/99 (42%), Positives = 62/99 (62%)
Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
G T+++G +G + +G Y +L H+VDDKIH+R GP ++T+QP G+++ GG
Sbjct: 997 GKSTLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1056
Query: 1091 LRFGEMERDCMIAHGASHFLKERLFDQSD--AYRVHVCE 1127
RFGEME M A+GA++ L+E L +SD RV V E
Sbjct: 1057 QRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYE 1095
Score = 148 (57.2 bits), Expect = 1.9e-43, Sum P(6) = 1.9e-43
Identities = 48/155 (30%), Positives = 75/155 (48%)
Query: 390 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
DD DH+GN+RL G L+ R+ ++ R VR + + + + Q I + + +
Sbjct: 359 DDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRE--RMTTQDVEAITPQTLINIRPVVA 416
Query: 450 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKLAKPR 505
+K T +SQ +++ S L+H RRL++ P G RE + R
Sbjct: 417 AIKEFFGTSQ------------LSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVR 464
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
+H S +G MCP ETPEG GL+ +L+ VY V
Sbjct: 465 DVHPSHYGRMCPIETPEGPNIGLIGSLS--VYARV 497
Score = 61 (26.5 bits), Expect = 1.9e-43, Sum P(6) = 1.9e-43
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 700 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
AD + ++ P ++ V ++IPF +H+ + R + M +QA+
Sbjct: 564 ADQVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 607
Score = 56 (24.8 bits), Expect = 1.9e-43, Sum P(6) = 1.9e-43
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 182 LGECPY-DQGGYFIINGSEKVLIAQ 205
+G+ P + G FIING+E+V+++Q
Sbjct: 145 MGDFPMMTEKGTFIINGTERVVVSQ 169
Score = 56 (24.8 bits), Expect = 1.9e-43, Sum P(6) = 1.9e-43
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 120 RNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDL 179
+++TY+APL+V T I + GE ++T VF+G P+M + +
Sbjct: 116 KDMTYAAPLFV--TAEFINN-NTGEIKSQT-----VFMGDFPMMTEKGTFIINGTERVVV 167
Query: 180 TELGECPYDQGGYF---IINGSEKVL 202
++L P G YF I +EK L
Sbjct: 168 SQLVRSP---GVYFDETIDKSTEKTL 190
Score = 47 (21.6 bits), Expect = 7.1e-32, Sum P(4) = 7.1e-32
Identities = 32/132 (24%), Positives = 54/132 (40%)
Query: 188 DQGGYFIINGSEKVLIAQEKMSTNH--------VYVFKKRQPNKYAYVAEVRSMAESQNR 239
DQ Y + ++ ++AQ T+ V V KK ++ +V M S +
Sbjct: 517 DQIDYLTADEEDRHVVAQANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQ 576
Query: 240 PPS--TMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPII---IVFRAL---G--FVAD 288
S T + L A G + R +P +R+E P++ + RA G VAD
Sbjct: 577 MVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAD 636
Query: 289 KD-ILEHICYDF 299
K ++E + D+
Sbjct: 637 KTGVIEEVSADY 648
Score = 37 (18.1 bits), Expect = 1.9e-43, Sum P(6) = 1.9e-43
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 311 SLEEAFVIQNQQVALDY-IGKRGATVGVTRDKRIKYAKEILQKEM 354
+L VI + L++ + KR TVGV D++ + +L K +
Sbjct: 189 TLHSVKVIPGRGAWLEFDVDKRD-TVGVRIDRKRRQPVTVLLKAL 232
>UNIPROTKB|F1NRJ5 [details] [associations]
symbol:F1NRJ5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00550000074993 EMBL:AADN02041199 IPI:IPI00820874
Ensembl:ENSGALT00000039028 Uniprot:F1NRJ5
Length = 760
Score = 307 (113.1 bits), Expect = 2.6e-43, Sum P(2) = 2.6e-43
Identities = 83/229 (36%), Positives = 116/229 (50%)
Query: 704 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
TH E+ P IL V A++IPF DHNQSPRN YQ MGKQ MG V NY+ R D Y+L+
Sbjct: 547 THQELFPHSILSVVANLIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYLLHT 606
Query: 764 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
PQ PLV R ++ P G N++VA+ YSGY+ ED++I+N+SS +RGF +
Sbjct: 607 PQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGYDMEDAMIVNKSSWERGF-------A 659
Query: 824 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKT 880
Y K + R + G+R G +KLD DGL G+ + D
Sbjct: 660 YGSVIKMESIDLSLKANRGGDNLVFGIRPGDPNVKEKLDADGLPFVGSILQPGD------ 713
Query: 881 TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL-RFVK 928
P + T ++ ++ E G+VD + L +N G +F K
Sbjct: 714 -PF-----YSYMNLNTGETFTVYYQNKEVGIVDNIKLCSNDRGTGKFKK 756
Score = 240 (89.5 bits), Expect = 2.6e-43, Sum P(2) = 2.6e-43
Identities = 104/404 (25%), Positives = 172/404 (42%)
Query: 157 IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV---LIAQEK----MS 209
+G VPIM++S C LY S ++L + E + GGYFIING EKV LI +
Sbjct: 22 VGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKVIRMLIMPRRNFPLAM 81
Query: 210 TNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPY 269
T H + K R P Y + + + + + M G +I +
Sbjct: 82 TRHKW--KNRGPGFTEYGVVMHCVKDEHSA------INMNLHYLENGCVMVNFIFQKELF 133
Query: 270 IRTEIPIIIVFRALGFVADKDILEHICYDFQ-DTQMM----ELLRPSLEEAFVIQNQQVA 324
+P+ +AL D I E + D + DT + E+LR ++ EA Q V
Sbjct: 134 F---LPLGFALKALVNFTDYQIFEELVKDKKNDTFYVNCVTEMLR-AVAEAGCYTQQNV- 188
Query: 325 LDYIGKR-GATVGVTRDKRIKYAKE-ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
L+Y+GK + + + A + I K + H+ T+K Y + +L
Sbjct: 189 LEYLGKSFRVKLNLPEWYSNEQAADFIFNKCICIHLTD----RTEKFYLLCMMTRKLCAF 244
Query: 383 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK-DVNLQFA 441
A G ED+ D N+ + AG L + + V+ ++K + ++N
Sbjct: 245 AKGECMEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFVLEKRTEKADININADSL 304
Query: 442 IKA----KTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPI 495
+KA +T +Y LATGN G +G+ V ++L + LSH R ++
Sbjct: 305 MKAFNMTTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGS 364
Query: 496 G-REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
+ + R+L WG +CP +TP+G+ CGL+ ++ + I
Sbjct: 365 AFAQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEI 408
>TIGR_CMR|APH_1024 [details] [associations]
symbol:APH_1024 "DNA-directed RNA polymerase, beta
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 RefSeq:YP_505583.1 ProteinModelPortal:Q2GJ68
STRING:Q2GJ68 PRIDE:Q2GJ68 GeneID:3930425 KEGG:aph:APH_1024
PATRIC:20950798 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
BioCyc:APHA212042:GHPM-1031-MONOMER Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 Uniprot:Q2GJ68
Length = 1383
Score = 197 (74.4 bits), Expect = 1.3e-42, Sum P(7) = 1.3e-42
Identities = 47/124 (37%), Positives = 70/124 (56%)
Query: 1007 ATPFTDVTVD-NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
A P + D IS+ L G +Y+G +G++ + +G Y +L H+VDDK
Sbjct: 1215 AAPVFEGPKDAQISRLLELADVDPSGQVDLYDGRSGQKFDRKVTVGYIYMLKLHHLVDDK 1274
Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY--RV 1123
IH+R GP ++T+QP G+S GG RFGEME + A+GA++ L+E L +SD RV
Sbjct: 1275 IHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDIVGRV 1334
Query: 1124 HVCE 1127
+ E
Sbjct: 1335 RIYE 1338
Score = 161 (61.7 bits), Expect = 1.3e-42, Sum P(7) = 1.3e-42
Identities = 55/193 (28%), Positives = 92/193 (47%)
Query: 374 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDN 432
++I +L+L G DD DH GN+R+ G + FR+ +L R + Y+ DN
Sbjct: 452 HVIKKLVLLPDGEGVVDDIDHLGNRRVRSVGEFIENQFRVGILRLERMIMDYMSSVNFDN 511
Query: 433 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
V F + K + + LK ++ +SQ +++ S ++H RRL+
Sbjct: 512 A--VPCDF-VNPKILATVLKDFFSSSQ------------LSQFMDQTNPLSEVTHKRRLS 556
Query: 493 S--PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT-VGSAAYPI 547
+ P G RE + R +H + +G +CP ETPEGQ GL+ +LA+ I G P
Sbjct: 557 ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLAIYAKINKYGFIESPY 616
Query: 548 LEFLEEWGTENFE 560
+ ++ T++ E
Sbjct: 617 RKVIDGVVTDSVE 629
Score = 154 (59.3 bits), Expect = 1.3e-42, Sum P(7) = 1.3e-42
Identities = 34/79 (43%), Positives = 44/79 (55%)
Query: 924 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
L VKV V Q GDK + RHG KG + EDMP +G DII+N +PSR
Sbjct: 1078 LTIVKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSLGVPSR 1137
Query: 984 MTIGQLIECIMGKVAAHMG 1002
M IGQ++E +G A ++G
Sbjct: 1138 MNIGQILETHLGWAAVNLG 1156
Score = 113 (44.8 bits), Expect = 1.3e-42, Sum P(7) = 1.3e-42
Identities = 33/104 (31%), Positives = 48/104 (46%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
+L G N +VA + GYN EDS++++ + R F S+ + + L E
Sbjct: 817 ELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRDVFTSIHIEEFECVVRDT-PLGPEKIM 875
Query: 841 R--PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
R PD N + H LDD G+ G VS V++GK TP
Sbjct: 876 RSVPD-VNEESLSH-----LDDVGIVNIGAEVSAGSVLVGKVTP 913
Score = 67 (28.6 bits), Expect = 1.3e-42, Sum P(7) = 1.3e-42
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 705 HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
+ ++ P I+ V AS+IPF ++N + R S M +QA+
Sbjct: 677 YIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAV 715
Score = 53 (23.7 bits), Expect = 1.3e-42, Sum P(7) = 1.3e-42
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 176 EKDLTELGECPYDQG-GYFIINGSEKVLIAQ 205
E++++ +G+ P G FIING E+V+++Q
Sbjct: 143 EQEVS-IGDLPMMTSYGTFIINGIERVIVSQ 172
Score = 40 (19.1 bits), Expect = 1.3e-42, Sum P(7) = 1.3e-42
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 41 LVRQQLDSFDEFI 53
L+R Q DS+D FI
Sbjct: 37 LIRIQRDSYDAFI 49
Score = 40 (19.1 bits), Expect = 3.0e-29, Sum P(6) = 3.0e-29
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 609 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 640
V+++ KE++ D G R + +++Q + I
Sbjct: 117 VQEVSFKEVKYVVDEGTLERSVKYMKEQEVSI 148
Score = 37 (18.1 bits), Expect = 2.1e-09, Sum P(4) = 2.1e-09
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 247 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
+M R KG S +P++ P+ I+ +LG
Sbjct: 1096 KMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSLG 1133
>TIGR_CMR|SPO_3508 [details] [associations]
symbol:SPO_3508 "DNA-directed RNA polymerase, beta
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_168703.1 ProteinModelPortal:Q5LMQ5 PRIDE:Q5LMQ5
GeneID:3196296 KEGG:sil:SPO3508 PATRIC:23380485 Uniprot:Q5LMQ5
Length = 1378
Score = 219 (82.2 bits), Expect = 1.5e-42, Sum P(6) = 1.5e-42
Identities = 48/124 (38%), Positives = 75/124 (60%)
Query: 1007 ATPFTDVTVD-NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
ATP D + +++ AL + G+ G +++G TG + + +G Y +L H+VDDK
Sbjct: 1215 ATPVFDGAKEADVNDALTRAGFDTSGQSVLFDGRTGEQFARPVTVGIKYLLKLHHLVDDK 1274
Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD--AYRV 1123
IH+R GP ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD A R
Sbjct: 1275 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRT 1334
Query: 1124 HVCE 1127
V E
Sbjct: 1335 KVYE 1338
Score = 165 (63.1 bits), Expect = 1.5e-42, Sum P(6) = 1.5e-42
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 924 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
++ VKV + R Q GDK + RHG KG + EDMP+ +G D +NP +PSR
Sbjct: 1079 MKMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSR 1138
Query: 984 MTIGQLIECIMGKVAAHMGKEGD 1006
M +GQ++E MG A +G D
Sbjct: 1139 MNVGQILETHMGWAARGLGLNVD 1161
Score = 133 (51.9 bits), Expect = 1.5e-42, Sum P(6) = 1.5e-42
Identities = 44/154 (28%), Positives = 74/154 (48%)
Query: 385 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDNGKDVNLQFAIK 443
G+ DD DH GN+R+ G L+ +R+ ++ R ++ + +D V Q I
Sbjct: 458 GKGDIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSVEIDT---VMPQDLIN 514
Query: 444 AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REG 499
AK + ++ + +SQ +++ S ++H RRL++ P G RE
Sbjct: 515 AKPAAAAVREFFGSSQ------------LSQFMDQTNPLSEVTHKRRLSALGPGGLTRER 562
Query: 500 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
+ R +H + +G MCP ETPEG GL+ +LA
Sbjct: 563 AGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLA 596
Score = 101 (40.6 bits), Expect = 1.5e-42, Sum P(6) = 1.5e-42
Identities = 30/104 (28%), Positives = 51/104 (49%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 838
+L G N +VA ++GYN EDS+++++ F S+ + + K+G E+
Sbjct: 812 ELALGKNVVVAFMPWNGYNYEDSILISERIARDDVFTSIHIEEFEVAARDTKLGP---EE 868
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
R D N +G + LD+ G+ G V D+++GK TP
Sbjct: 869 ITR-DIPN-VGEE--ALRNLDEAGIVYIGAEVQPGDILVGKITP 908
Score = 63 (27.2 bits), Expect = 1.5e-42, Sum P(6) = 1.5e-42
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 686 NDLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
N+LV R + A ++ ++ P ++ V AS+IPF +++ + R S M +QA+
Sbjct: 651 NELVNTRQAGDYTLAPMESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAV 710
Score = 60 (26.2 bits), Expect = 1.5e-42, Sum P(6) = 1.5e-42
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 175 SEKDLTE----LGECPY-DQGGYFIINGSEKVLIAQ 205
S KD+ E +G+ P G FI+NG+E+V+++Q
Sbjct: 119 SVKDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQ 154
Score = 58 (25.5 bits), Expect = 2.3e-42, Sum P(6) = 2.3e-42
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 120 RNLTYSAPLYVDVTKRVIKKGHD-GEEVTETQDFTKVFIGKVPIM 163
R++TYSAPL V + V D G + + VF+G +P+M
Sbjct: 92 RDMTYSAPLKVTLRLIVFDVDEDTGAKSVKDIKEQDVFMGDMPLM 136
Score = 40 (19.1 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 713 ILGVCASIIPFPDHNQS 729
I+GV S+ P D N++
Sbjct: 53 IMGVFQSVFPIKDFNET 69
Score = 39 (18.8 bits), Expect = 7.1e-24, Sum P(3) = 7.1e-24
Identities = 31/135 (22%), Positives = 58/135 (42%)
Query: 36 FEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH----NPGQQS----DFAETI 87
+E+ L+ +++ D F ++E + D ++ PE N G+++ D A +
Sbjct: 831 YEDSILISERIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIV 890
Query: 88 Y---KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 144
Y ++ G I + K +T GE+ + P+ LR + V T +K G G
Sbjct: 891 YIGAEVQPGDILVGK--ITPK-GESP-MTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGT 946
Query: 145 EVTETQDFTKVFIGK 159
V E + F + + K
Sbjct: 947 -VVEVRVFNRHGVDK 960
Score = 37 (18.1 bits), Expect = 3.2e-40, Sum P(6) = 3.2e-40
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 298 DFQDTQMMELLRPSLEE 314
DF +T ++E ++ LE+
Sbjct: 65 DFNETSVLEFVKYELEK 81
>TIGR_CMR|GSU_2863 [details] [associations]
symbol:GSU_2863 "DNA-directed RNA polymerase, beta
subunit" species:243231 "Geobacter sulfurreducens PCA" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218612
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 OMA:FMTWEGY
RefSeq:NP_953905.1 ProteinModelPortal:Q748Y6 PRIDE:Q748Y6
GeneID:2686783 KEGG:gsu:GSU2863 PATRIC:22028577
BioCyc:GSUL243231:GH27-2844-MONOMER Uniprot:Q748Y6
Length = 1370
Score = 198 (74.8 bits), Expect = 3.1e-42, Sum P(6) = 3.1e-42
Identities = 43/114 (37%), Positives = 67/114 (58%)
Query: 1007 ATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
A+P F + + I L K G+ ++Y+G +G + +G Y +L H+VDDK
Sbjct: 1208 ASPVFEGASEEQIRSMLDKAGFDETAQVSLYDGKSGEPFKHKVTVGVMYVLKLHHLVDDK 1267
Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
IH+R GP ++T+QP G+++ GG R GEME M A+GA++ L+E L +SD
Sbjct: 1268 IHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSD 1321
Score = 170 (64.9 bits), Expect = 3.1e-42, Sum P(6) = 3.1e-42
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 924 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
++ VKV + R Q+GDK + RHG KG V +EDMP+ +G +I++NP +PSR
Sbjct: 1075 IKMVKVYIAIKRKLQVGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSR 1134
Query: 984 MTIGQLIECIMGKVAAHMG 1002
M +GQ++E +G A +G
Sbjct: 1135 MNVGQILETHLGWAAKGIG 1153
Score = 130 (50.8 bits), Expect = 3.1e-42, Sum P(6) = 3.1e-42
Identities = 46/165 (27%), Positives = 83/165 (50%)
Query: 375 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV--RAYVQKCVDN 432
++ L+ G+ DD DH GN+R+ G LL +R+ ++ R + R +Q+ V+N
Sbjct: 436 VVRYLIDLKNGKGTIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSLQE-VEN 494
Query: 433 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
+L I +K +++ +K + +SQ +++ S ++H RRL+
Sbjct: 495 LMPHDL---INSKPVSAVVKEFFGSSQ------------LSQFMDQTNPLSEVTHKRRLS 539
Query: 493 S--PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
+ P G RE + R +H + +G +CP ETPEG GL+ +L+
Sbjct: 540 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLS 584
Score = 104 (41.7 bits), Expect = 3.1e-42, Sum P(6) = 3.1e-42
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 838
+L G N +VA + GYN EDS+++++ + + S+ + + K+G KE+
Sbjct: 801 ELALGQNVVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEFECVARDTKLG---KEE 857
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
S+ + + LD+ G+ G V D+++GK TP
Sbjct: 858 I----TSDIPNLGEEALKDLDESGIIRIGAEVKPGDILVGKITP 897
Score = 74 (31.1 bits), Expect = 3.1e-42, Sum P(6) = 3.1e-42
Identities = 67/288 (23%), Positives = 117/288 (40%)
Query: 82 DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL-YVDVTKRVIKKG 140
D + YK F QI + P ++ G A +F +++ + +A L YV T K
Sbjct: 29 DIQKNSYK-RFLQID-TPPEARKNSGLEA-VFKSVFPIKDFSDTASLEYVTYTLGAPK-- 83
Query: 141 HDGEEVTET-QDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE----LGECPY-DQGGYFI 194
+D EE + F KV +++ S +D+ E GE P + G FI
Sbjct: 84 YDVEECHQRGMTFAAPMKVKVRLVVWDVNKDTGVRSIRDIKEQEVYFGEIPLMTENGTFI 143
Query: 195 INGSEKVLIAQEKMSTNHVYVFKKRQPN---KYAYVAEV----RSMAESQNRPPSTMFVR 247
ING+E+V+++Q S Y K + + K Y A V S + + +FVR
Sbjct: 144 INGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSARVIPYRGSWLDFEFDHKDILFVR 203
Query: 248 MLSRTSAKGG----SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQ 303
+ R + G A L Y I++ + AD ++L
Sbjct: 204 IDRRRKMPATVLLKALGYSAEALLNYFYKSEEILVAAEGMWKKADPELLA------SQKA 257
Query: 304 MMELLRPSLEEAFVIQNQQ---VALDYIGKRGAT-VGVTRDKRI-KYA 346
++++ P E + N++ A+ + + G T + +T ++ + KYA
Sbjct: 258 SVDIVAPKTGEVLLKANRKFTKAAIRKMTEHGITQIPITMEEVLGKYA 305
Score = 63 (27.2 bits), Expect = 3.1e-42, Sum P(6) = 3.1e-42
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 686 NDLVQARLHPEE--AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
N+ V AR E + D ++ P ++ V AS+IPF +++ + R S M +QA+
Sbjct: 639 NEYVSARKSGEFLLVHRDELELMDVAPMQLVSVAASLIPFLENDDANRALMGSNMQRQAV 698
Score = 50 (22.7 bits), Expect = 5.7e-31, Sum P(5) = 5.7e-31
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 601 DVNTEVGVVRDIR-LKELRIYTDYGRCSRPLFIVEKQRLLIKKRD-IIALQQRESPEDGG 658
DVN + GV R IR +KE +Y +G PL + E +I + +I Q SP G
Sbjct: 110 DVNKDTGV-RSIRDIKEQEVY--FGEI--PL-MTENGTFIINGTERVIVSQLHRSP--GV 161
Query: 659 WHD 661
++D
Sbjct: 162 FYD 164
Score = 41 (19.5 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 247 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
+M R KG S +PY+ P+ IV LG
Sbjct: 1093 KMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLG 1130
>UNIPROTKB|P0A8V2 [details] [associations]
symbol:rpoB "RNA polymerase, beta subunit" species:83333
"Escherichia coli K-12" [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006351 EMBL:U00006 DrugBank:DB01045 PDB:3IYD
PDBsum:3IYD GO:GO:0003899 EMBL:V00339 PDB:3T72 PDBsum:3T72
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 PDB:3LU0 PDBsum:3LU0 KO:K03043
ProtClustDB:PRK00405 Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3
TIGRFAMs:TIGR02013 OMA:FMTWEGY EMBL:V00340 EMBL:U76222 EMBL:V00341
EMBL:M38292 EMBL:M38293 EMBL:M38287 EMBL:M38304 EMBL:U77436
EMBL:M38303 PIR:F65205 RefSeq:NP_418414.1 RefSeq:YP_491474.1
PDB:3LTI PDB:3TBI PDBsum:3LTI PDBsum:3TBI ProteinModelPortal:P0A8V2
SMR:P0A8V2 DIP:DIP-35777N IntAct:P0A8V2 MINT:MINT-1222430
SWISS-2DPAGE:P0A8V2 PaxDb:P0A8V2 PRIDE:P0A8V2
EnsemblBacteria:EBESCT00000000939 EnsemblBacteria:EBESCT00000000940
EnsemblBacteria:EBESCT00000000941 EnsemblBacteria:EBESCT00000017696
GeneID:12934478 GeneID:948488 KEGG:ecj:Y75_p3210 KEGG:eco:b3987
PATRIC:32123495 EchoBASE:EB0887 EcoGene:EG10894
BioCyc:EcoCyc:RPOB-MONOMER BioCyc:ECOL316407:JW3950-MONOMER
BioCyc:MetaCyc:RPOB-MONOMER BindingDB:P0A8V2 ChEMBL:CHEMBL1852
DrugBank:DB01220 EvolutionaryTrace:P0A8V2 Genevestigator:P0A8V2
Uniprot:P0A8V2
Length = 1342
Score = 192 (72.6 bits), Expect = 1.1e-41, Sum P(7) = 1.1e-41
Identities = 44/114 (38%), Positives = 66/114 (57%)
Query: 1007 ATPFTDVTVDNISKALHKCG-YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
ATP D + K L K G G +Y+G TG + + +G Y +L H+VDDK
Sbjct: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242
Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296
Score = 169 (64.5 bits), Expect = 1.1e-41, Sum P(7) = 1.1e-41
Identities = 44/133 (33%), Positives = 67/133 (50%)
Query: 877 IGKTTPISQDEAQGQASRYTRRDHSISLR-HSETGMVDQVLLTTNADG-LRFVKVRVRSV 934
+G T Q++ + A +Y H + ++ + Q A G L+ VKV +
Sbjct: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG--DDLAPGVLKIVKVYLAVK 1057
Query: 935 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 994
R Q GDK + RHG KG + EDMP+ G DI++NP +PSRM IGQ++E +
Sbjct: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117
Query: 995 GKVAAHMGKEGDA 1007
G A +G + +A
Sbjct: 1118 GMAAKGIGDKINA 1130
Score = 133 (51.9 bits), Expect = 1.1e-41, Sum P(7) = 1.1e-41
Identities = 46/165 (27%), Positives = 80/165 (48%)
Query: 375 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
++ +L+ G+ DD DH GN+R+ G + FR+ L R RA ++
Sbjct: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV---GLVRVERAVKERLSLGDL 484
Query: 435 DVNL-QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
D + Q I AK I++ +K + +SQ +++ S ++H RR+++
Sbjct: 485 DTLMPQDMINAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEITHKRRISA 532
Query: 494 --PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 534
P G RE + R +H + +G +CP ETPEG GL+ +L++
Sbjct: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577
Score = 109 (43.4 bits), Expect = 1.1e-41, Sum P(7) = 1.1e-41
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 838
+L G N VA ++GYN EDS+++++ + F ++ + + K+G E+
Sbjct: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP---EE 849
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
D N +G + KLD+ G+ G V+G D+++GK TP
Sbjct: 850 I-TADIPN-VG--EAALSKLDESGIVYIGAEVTGGDILVGKVTP 889
Score = 70 (29.7 bits), Expect = 1.1e-41, Sum P(7) = 1.1e-41
Identities = 37/152 (24%), Positives = 69/152 (45%)
Query: 173 QNSEKDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN---KY 224
+ + KD+ E +GE P G F+ING+E+V+++Q S + K + + K
Sbjct: 111 EGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170
Query: 225 AYVAEV----RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 280
Y A + S + + P +FVR + R R ++P I+
Sbjct: 171 LYNARIIPYRGSWLDFEFDPKDNLFVR-IDR-------------------RRKLPATIIL 210
Query: 281 RALGFVADK--DIL-EHICYDFQDTQM-MELL 308
RAL + ++ D+ E + ++ +D ++ MEL+
Sbjct: 211 RALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242
Score = 63 (27.2 bits), Expect = 1.1e-41, Sum P(7) = 1.1e-41
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 687 DLVQARLHPEEAY--ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
DLV R E + D + ++ ++ V AS+IPF +H+ + R + M +QA+
Sbjct: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690
Score = 62 (26.9 bits), Expect = 7.3e-41, Sum P(7) = 7.3e-41
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 118 RLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 163
++R +TYSAPL V + + VI + E + +V++G++P+M
Sbjct: 86 QIRGVTYSAPLRVKL-RLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130
Score = 62 (26.9 bits), Expect = 8.0e-24, Sum P(3) = 8.0e-24
Identities = 42/157 (26%), Positives = 69/157 (43%)
Query: 36 FEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH----NPGQQS----DFAETI 87
FE+ LV +++ D F +QE+ S D ++ PE N G+ + D + +
Sbjct: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 871
Query: 88 Y---KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 144
Y +++ G I + K +T GET L P+ LR + V + + G G
Sbjct: 872 YIGAEVTGGDILVGK--VTPK-GETQ-LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 927
Query: 145 EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 181
V + Q FT+ + K L L Q ++KDL+E
Sbjct: 928 -VIDVQVFTRDGVEKDKRALEIEEMQLKQ-AKKDLSE 962
Score = 39 (18.8 bits), Expect = 1.1e-41, Sum P(7) = 1.1e-41
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 41 LVRQQLDSFDEFIQ 54
L+ QLDSF +FI+
Sbjct: 27 LLSIQLDSFQKFIE 40
Score = 37 (18.1 bits), Expect = 1.4e-38, Sum P(6) = 1.4e-38
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 50 DEFIQNTMQEIVDESADIEIRPE 72
D F + + EI D +E+ PE
Sbjct: 222 DLFFEKVIFEIRDNKLQMELVPE 244
Score = 37 (18.1 bits), Expect = 1.4e-27, Sum P(4) = 1.4e-27
Identities = 24/116 (20%), Positives = 44/116 (37%)
Query: 43 RQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMM 102
R Q+D D + Q++V A + P +H+ ++ + + + + KP++
Sbjct: 647 RDQVDYMDV----STQQVVSVGASLI--PFLEHDDANRALMGANMQRQAVPTLRADKPLV 700
Query: 103 TESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD----GEEVTETQDFTK 154
+ E A YVD ++ VIK D GE + + TK
Sbjct: 701 G-TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK 755
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(4) = 0.00015
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 1060 HMVDDKIHSRGRGPVQILTRQPAE 1083
H V+D + R +G + +R +
Sbjct: 628 HFVEDLVTCRSKGESSLFSRDQVD 651
>UNIPROTKB|Q9KV30 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 189 (71.6 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 43/114 (37%), Positives = 66/114 (57%)
Query: 1007 ATPFTDVTVDNISKA-LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
ATP D ++ KA L G T+++G TG + +G Y +L H+VDDK
Sbjct: 1182 ATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDK 1241
Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1242 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295
Score = 162 (62.1 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 924 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
L+ VKV + R Q GDK + RHG KG + EDMP+ G DI++NP +PSR
Sbjct: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSR 1106
Query: 984 MTIGQLIECIMGKVAAHMG 1002
M IGQ++E +G A +G
Sbjct: 1107 MNIGQILEVHLGLAAKGIG 1125
Score = 135 (52.6 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 46/164 (28%), Positives = 81/164 (49%)
Query: 375 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDNG 433
++ +L+ G+ DD DH GN+R+ G + FR+ ++ R V+ + +DN
Sbjct: 428 VMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDN- 486
Query: 434 KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
V Q I AK I++ +K + +SQ +++ S ++H RR+++
Sbjct: 487 --VMPQDLINAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEVTHKRRISA 532
Query: 494 --PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
P G RE + R +H + +G +CP ETPEG GL+ +L+
Sbjct: 533 LGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLS 576
Score = 105 (42.0 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR--SYRDEEKKMGTLVKED 838
+L G N +A ++GYN EDS+++++ + F ++ + S + K+G E+
Sbjct: 793 ELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGA---EE 849
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
D N +G + KLD+ G+ G V G D+++GK TP
Sbjct: 850 I-TADIPN-VG--EAALSKLDESGIVYIGAEVKGGDILVGKVTP 889
Score = 74 (31.1 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 29/143 (20%), Positives = 63/143 (44%)
Query: 115 KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN 174
K ++R +TYS PL V + + K V + ++ +V++G++P+M + +
Sbjct: 83 KECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKE-QEVYMGEIPLMTENGTFVINGT 141
Query: 175 SEKDLTELGECP--YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 232
+++L P + + S KVL + ++ + P YV
Sbjct: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLYVR---- 197
Query: 233 MAESQNRPPSTMFVRMLSRTSAK 255
+ + + P+++ +R L +TSA+
Sbjct: 198 -IDRRRKLPASIILRALGKTSAE 219
Score = 68 (29.0 bits), Expect = 6.1e-41, Sum P(7) = 6.1e-41
Identities = 40/148 (27%), Positives = 68/148 (45%)
Query: 177 KDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN---KYAYVA 228
KD+ E +GE P + G F+ING+E+V+++Q S + K + + K Y A
Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174
Query: 229 EV----RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
+ S + + P ++VR + R R ++P I+ RALG
Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVR-IDR-------------------RRKLPASIILRALG 214
Query: 285 FVADK--DIL-EHICYDFQD-TQMMELL 308
+ + DI E + ++ +D T MMEL+
Sbjct: 215 KTSAEILDIFFEKVNFEVKDQTLMMELV 242
Score = 67 (28.6 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 690 QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
++ LHP E + D + ++ + ++ + AS+IPF +H+ + R + M +QA+
Sbjct: 641 ESGLHPRE-HVD---YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAV 690
Score = 48 (22.0 bits), Expect = 2.4e-21, Sum P(3) = 2.4e-21
Identities = 46/180 (25%), Positives = 76/180 (42%)
Query: 36 FEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH----NPGQQS----DFAETI 87
FE+ LV +++ D F +QE+ + D ++ E N G+ + D + +
Sbjct: 812 FEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIV 871
Query: 88 Y---KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 144
Y ++ G I + K +T GET L P+ LR + V T + G
Sbjct: 872 YIGAEVKGGDILVGK--VTPK-GETQ-LTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGT 927
Query: 145 EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 204
V + Q FT+ + K L L + ++KDLTE E +GG ++ VL+A
Sbjct: 928 -VIDVQVFTRDGVEKDKRALEIEQMQL-KEAKKDLTE--EFQILEGG--LLARVRSVLLA 981
Score = 42 (19.8 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 41 LVRQQLDSFDEFIQNTMQ-EIVDESADIEIRPESQHNPGQQSDF 83
L+ QLDSF++FI+ + + E+A + P +N + +
Sbjct: 27 LLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQSYNGNSELQY 70
Score = 37 (18.1 bits), Expect = 9.1e-38, Sum P(6) = 9.1e-38
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 39 KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
+ L + + D F + E+ D++ +E+ PE
Sbjct: 211 RALGKTSAEILDIFFEKVNFEVKDQTLMMELVPE 244
>TIGR_CMR|VC_0328 [details] [associations]
symbol:VC_0328 "DNA-directed RNA polymerase, beta subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 189 (71.6 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 43/114 (37%), Positives = 66/114 (57%)
Query: 1007 ATPFTDVTVDNISKA-LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
ATP D ++ KA L G T+++G TG + +G Y +L H+VDDK
Sbjct: 1182 ATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDK 1241
Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1242 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295
Score = 162 (62.1 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 924 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
L+ VKV + R Q GDK + RHG KG + EDMP+ G DI++NP +PSR
Sbjct: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSR 1106
Query: 984 MTIGQLIECIMGKVAAHMG 1002
M IGQ++E +G A +G
Sbjct: 1107 MNIGQILEVHLGLAAKGIG 1125
Score = 135 (52.6 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 46/164 (28%), Positives = 81/164 (49%)
Query: 375 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC-VDNG 433
++ +L+ G+ DD DH GN+R+ G + FR+ ++ R V+ + +DN
Sbjct: 428 VMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDN- 486
Query: 434 KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
V Q I AK I++ +K + +SQ +++ S ++H RR+++
Sbjct: 487 --VMPQDLINAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEVTHKRRISA 532
Query: 494 --PIG--REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
P G RE + R +H + +G +CP ETPEG GL+ +L+
Sbjct: 533 LGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLS 576
Score = 105 (42.0 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR--SYRDEEKKMGTLVKED 838
+L G N +A ++GYN EDS+++++ + F ++ + S + K+G E+
Sbjct: 793 ELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGA---EE 849
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
D N +G + KLD+ G+ G V G D+++GK TP
Sbjct: 850 I-TADIPN-VG--EAALSKLDESGIVYIGAEVKGGDILVGKVTP 889
Score = 74 (31.1 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 29/143 (20%), Positives = 63/143 (44%)
Query: 115 KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN 174
K ++R +TYS PL V + + K V + ++ +V++G++P+M + +
Sbjct: 83 KECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKE-QEVYMGEIPLMTENGTFVINGT 141
Query: 175 SEKDLTELGECP--YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 232
+++L P + + S KVL + ++ + P YV
Sbjct: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLYVR---- 197
Query: 233 MAESQNRPPSTMFVRMLSRTSAK 255
+ + + P+++ +R L +TSA+
Sbjct: 198 -IDRRRKLPASIILRALGKTSAE 219
Score = 68 (29.0 bits), Expect = 6.1e-41, Sum P(7) = 6.1e-41
Identities = 40/148 (27%), Positives = 68/148 (45%)
Query: 177 KDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN---KYAYVA 228
KD+ E +GE P + G F+ING+E+V+++Q S + K + + K Y A
Sbjct: 115 KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174
Query: 229 EV----RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
+ S + + P ++VR + R R ++P I+ RALG
Sbjct: 175 RIIPYRGSWLDFEFDPKDNLYVR-IDR-------------------RRKLPASIILRALG 214
Query: 285 FVADK--DIL-EHICYDFQD-TQMMELL 308
+ + DI E + ++ +D T MMEL+
Sbjct: 215 KTSAEILDIFFEKVNFEVKDQTLMMELV 242
Score = 67 (28.6 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 690 QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
++ LHP E + D + ++ + ++ + AS+IPF +H+ + R + M +QA+
Sbjct: 641 ESGLHPRE-HVD---YMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAV 690
Score = 48 (22.0 bits), Expect = 2.4e-21, Sum P(3) = 2.4e-21
Identities = 46/180 (25%), Positives = 76/180 (42%)
Query: 36 FEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH----NPGQQS----DFAETI 87
FE+ LV +++ D F +QE+ + D ++ E N G+ + D + +
Sbjct: 812 FEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIV 871
Query: 88 Y---KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 144
Y ++ G I + K +T GET L P+ LR + V T + G
Sbjct: 872 YIGAEVKGGDILVGK--VTPK-GETQ-LTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGT 927
Query: 145 EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 204
V + Q FT+ + K L L + ++KDLTE E +GG ++ VL+A
Sbjct: 928 -VIDVQVFTRDGVEKDKRALEIEQMQL-KEAKKDLTE--EFQILEGG--LLARVRSVLLA 981
Score = 42 (19.8 bits), Expect = 1.5e-41, Sum P(7) = 1.5e-41
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 41 LVRQQLDSFDEFIQNTMQ-EIVDESADIEIRPESQHNPGQQSDF 83
L+ QLDSF++FI+ + + E+A + P +N + +
Sbjct: 27 LLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQSYNGNSELQY 70
Score = 37 (18.1 bits), Expect = 9.1e-38, Sum P(6) = 9.1e-38
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 39 KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
+ L + + D F + E+ D++ +E+ PE
Sbjct: 211 RALGKTSAEILDIFFEKVNFEVKDQTLMMELVPE 244
>TIGR_CMR|SO_0224 [details] [associations]
symbol:SO_0224 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:NP_715864.1 ProteinModelPortal:Q8EK74
PRIDE:Q8EK74 GeneID:1168107 KEGG:son:SO_0224 PATRIC:23520141
Uniprot:Q8EK74
Length = 1345
Score = 191 (72.3 bits), Expect = 2.5e-41, Sum P(6) = 2.5e-41
Identities = 42/114 (36%), Positives = 64/114 (56%)
Query: 1007 ATP-FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
ATP F I + L G G +++G TG + +G Y +L H+VDDK
Sbjct: 1186 ATPAFDGAKEKEIKQMLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDK 1245
Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1246 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1299
Score = 165 (63.1 bits), Expect = 2.5e-41, Sum P(6) = 2.5e-41
Identities = 34/79 (43%), Positives = 47/79 (59%)
Query: 924 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
L+ VKV + R Q GDK + RHG KG + EDMP+ +G DI++NP +PSR
Sbjct: 1048 LKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLNPLGVPSR 1107
Query: 984 MTIGQLIECIMGKVAAHMG 1002
M IGQ++E +G A +G
Sbjct: 1108 MNIGQVLEVHLGAAAKGIG 1126
Score = 134 (52.2 bits), Expect = 2.5e-41, Sum P(6) = 2.5e-41
Identities = 43/148 (29%), Positives = 74/148 (50%)
Query: 390 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
DD DH GN+R+ G + FR+ ++ R VR + + + ++ Q I AK I++
Sbjct: 444 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS--LGDLNELMPQDLINAKPISA 501
Query: 450 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGKLAKPR 505
+K + +SQ +++ S ++H RR+++ P G RE + R
Sbjct: 502 AVKEFFGSSQ------------LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVR 549
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLA 533
+H + +G +CP ETPEG GL+ +LA
Sbjct: 550 DVHPTHYGRLCPIETPEGPNIGLINSLA 577
Score = 103 (41.3 bits), Expect = 2.5e-41, Sum P(6) = 2.5e-41
Identities = 45/179 (25%), Positives = 85/179 (47%)
Query: 782 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR--SYRDEEKKMGTLVKEDF 839
L G N +A ++GYN EDS+++++ F ++ + S + K+G+ E+
Sbjct: 795 LALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGS---EEI 851
Query: 840 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-----ISQDEAQGQASR 894
D N +G + KLD+ G+ G V G D+++GK TP ++ +E +A
Sbjct: 852 -TADIPN-VG--ESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIF 907
Query: 895 YTR----RDHSISLRHSETGMVDQVLLTTNADGLRFVK--VRVRSVRIPQ----IGDKF 943
+ +D S+ + +S G + V + T DG+ K + + + I Q +G++F
Sbjct: 908 GEKASDVKDSSLRVPNSVKGTIIDVQVFTR-DGVEKDKRAIEIEEMHIAQARKDLGEEF 965
Score = 69 (29.3 bits), Expect = 2.5e-41, Sum P(6) = 2.5e-41
Identities = 35/128 (27%), Positives = 54/128 (42%)
Query: 177 KDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVF---KKRQPNKYAYVA 228
KD+ E +G+ P G F+ING+E+V+++Q S + K K Y A
Sbjct: 115 KDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNA 174
Query: 229 EV----RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
+ S + + P +FVR+ R +RA L Y EI + + F +
Sbjct: 175 RIIPYRGSWLDFEFDPKDALFVRIDRRRKLPATI---ILRA-LEYSTQEI-LDLFFERVE 229
Query: 285 FVADKDIL 292
F KD L
Sbjct: 230 FKIKKDTL 237
Score = 68 (29.0 bits), Expect = 2.5e-41, Sum P(6) = 2.5e-41
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 700 ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
A + ++ P I+ V AS+IPF +H+ + R + M +QA+
Sbjct: 648 ASDIQYMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAV 691
Score = 61 (26.5 bits), Expect = 1.7e-40, Sum P(6) = 1.7e-40
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 115 KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 163
K ++R +TYSAPL V + + + V + ++ +V++G +P+M
Sbjct: 83 KECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKE-QEVYMGDIPLM 130
>TIGR_CMR|NSE_0678 [details] [associations]
symbol:NSE_0678 "DNA-directed RNA polymerase, beta
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_506556.1 ProteinModelPortal:Q2GD90
STRING:Q2GD90 GeneID:3931355 KEGG:nse:NSE_0678 PATRIC:22681375
BioCyc:NSEN222891:GHFU-692-MONOMER Uniprot:Q2GD90
Length = 1358
Score = 199 (75.1 bits), Expect = 1.6e-40, Sum P(6) = 1.6e-40
Identities = 44/113 (38%), Positives = 64/113 (56%)
Query: 1007 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
A+ F D I + L G G E +Y+G TG + + +G Y +L H+V+DKI
Sbjct: 1183 ASVFEGPKTDEIERLLVLAGKDPSGQEVLYDGVTGEKFDRKVTVGCKYMLKLHHLVNDKI 1242
Query: 1067 HSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
H+R G ++T+QP G+S GG RFGEME + A+GA+ L+E L +SD
Sbjct: 1243 HARSIGSYSLITQQPLGGKSHFGGQRFGEMECWALQAYGATFALQEMLTIKSD 1295
Score = 177 (67.4 bits), Expect = 1.6e-40, Sum P(6) = 1.6e-40
Identities = 38/85 (44%), Positives = 50/85 (58%)
Query: 921 ADG-LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
A G L VKV V Q GDK S RHG KG + EDMP+ +G DII+NP
Sbjct: 1045 AQGVLMVVKVFVAVKHTLQPGDKMSGRHGNKGVISRIVPAEDMPYLADGTPVDIILNPLG 1104
Query: 980 IPSRMTIGQLIECIMGKVAAHMGKE 1004
+PSRM +GQ++E +G A ++GK+
Sbjct: 1105 VPSRMNVGQILETHLGWAAYNLGKK 1129
Score = 119 (46.9 bits), Expect = 1.6e-40, Sum P(6) = 1.6e-40
Identities = 38/153 (24%), Positives = 74/153 (48%)
Query: 390 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
DD DH GN+R+ G + FR+ ++ + + V+N + + + I S
Sbjct: 439 DDIDHLGNRRVRSVGEFMDNQFRIGLVRMAKVI-------VENMATADFDTVMPCEMINS 491
Query: 450 GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG-REGKLA-KPR 505
+ ++ + ++A +SQ +++ S ++H RR+++ P G G+ + R
Sbjct: 492 KILGAVIR-EFFMSSA------LSQFMDQTNPLSEITHKRRISALGPGGLNRGRAGFEVR 544
Query: 506 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
+H + +G +C ETPEG GL+ +LA+ I
Sbjct: 545 DVHTTHYGRICATETPEGATIGLINSLAIYAKI 577
Score = 109 (43.4 bits), Expect = 1.6e-40, Sum P(6) = 1.6e-40
Identities = 33/104 (31%), Positives = 50/104 (48%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
+L G N +VA + GYN EDSV+++ + + F S+ + + L E+
Sbjct: 785 ELALGRNLVVAFLSWRGYNFEDSVVISSNVVRDDLFTSVHLEGFECVVRDT-RLGPEEIT 843
Query: 841 RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
R D S G+ LD+ G+A G V DV++GK TP S
Sbjct: 844 R-DVS---GVAEEFLHCLDEFGIACVGANVEAGDVLVGKVTPKS 883
Score = 60 (26.2 bits), Expect = 1.6e-40, Sum P(6) = 1.6e-40
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 686 NDLVQARLHPEEAYA--DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
+DLV R + E + ++ I+ V AS+IPF +++ + R S M +QA+
Sbjct: 627 DDLVYCRRNYENVFIPRSEVQFADVSAKQIVSVAASLIPFLENDDANRALMGSNMQRQAV 686
Score = 58 (25.5 bits), Expect = 1.6e-40, Sum P(6) = 1.6e-40
Identities = 32/125 (25%), Positives = 53/125 (42%)
Query: 177 KDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 231
KD+ E +G+ P + G FIING E+V+++Q H R P + + R
Sbjct: 115 KDVREQEIYMGDIPIMSKNGTFIINGVERVVVSQM-----H------RAPGVFFDNDKAR 163
Query: 232 SMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 291
S++ N + R Y R + ++P+ + RALG +++KDI
Sbjct: 164 SISGKLNYIARIIPYRGSWLDFEFDAKDVLYFRIDK---KRKLPVTFLLRALG-LSNKDI 219
Query: 292 LEHIC 296
C
Sbjct: 220 FAQFC 224
Score = 54 (24.1 bits), Expect = 6.0e-34, Sum P(6) = 6.0e-34
Identities = 33/138 (23%), Positives = 54/138 (39%)
Query: 325 LDYIGKRGA-TVGVTRDKRIKYAKEILQKEMLPHVGTGDF-----CETKKAYYFGYIIHR 378
+D++G R +VG D + + + K ++ ++ T DF CE + G +I
Sbjct: 441 IDHLGNRRVRSVGEFMDNQFRIGLVRMAKVIVENMATADFDTVMPCEMINSKILGAVIRE 500
Query: 379 LLLCALGRRAEDDRDHYGN----KRLDLAGPLLGGLFRMLFRKLTRDVRA--YVQKCVDN 432
+ + + D + +R+ GP GGL R RDV Y + C
Sbjct: 501 FFMSSALSQFMDQTNPLSEITHKRRISALGP--GGLNRGRAGFEVRDVHTTHYGRICATE 558
Query: 433 ---GKDVNL--QFAIKAK 445
G + L AI AK
Sbjct: 559 TPEGATIGLINSLAIYAK 576
Score = 53 (23.7 bits), Expect = 5.0e-40, Sum P(6) = 5.0e-40
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 120 RNLTYSAPLYVDVTKRVI---KKGHDGEEVTETQDFTK------VFIGKVPIMLRS 166
R +TYSAPL + + V+ + +G E T+ K +++G +PIM ++
Sbjct: 79 RGITYSAPLRA-ILRLVVFGDETSGEGSEGVSTEPAVKDVREQEIYMGDIPIMSKN 133
Score = 44 (20.5 bits), Expect = 6.6e-39, Sum P(6) = 6.6e-39
Identities = 17/71 (23%), Positives = 27/71 (38%)
Query: 642 KRDIIALQQRESPEDG-GWHDLVAKGFXXXXXXXXXXXXXXXXXXNDLVQARLHPEEAYA 700
+R + L E+P G G VA+G N +V A ++ +
Sbjct: 682 QRQAVPLIMPEAPLVGTGMEGYVARGSGAVIVAKRAGVVQYIDARN-IVVASESKDDFWI 740
Query: 701 DTYTHCEIHPS 711
D+YT C+ S
Sbjct: 741 DSYTLCKFRKS 751
Score = 40 (19.1 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 247 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
+M R KG S +PY+ P+ I+ LG
Sbjct: 1067 KMSGRHGNKGVISRIVPAEDMPYLADGTPVDIILNPLG 1104
>TIGR_CMR|CPS_4769 [details] [associations]
symbol:CPS_4769 "DNA-directed RNA polymerase, beta
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_271413.1 STRING:Q47UV9 PRIDE:Q47UV9
GeneID:3523343 KEGG:cps:CPS_4769 PATRIC:21472355
BioCyc:CPSY167879:GI48-4775-MONOMER Uniprot:Q47UV9
Length = 1342
Score = 181 (68.8 bits), Expect = 3.8e-40, Sum P(6) = 3.8e-40
Identities = 42/114 (36%), Positives = 63/114 (55%)
Query: 1007 ATPFTDVTVDNISKALHKCG-YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
ATP D + K L G + +G TGR + +G Y +L H+VDDK
Sbjct: 1183 ATPAFDGAAEKEIKELFVLADMPQSGQFVLTDGRTGREFERPVTVGYMYMLKLNHLVDDK 1242
Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
+H+R G ++T+QP G+++ GG RFGEME + A+GA++ L+E L +SD
Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296
Score = 165 (63.1 bits), Expect = 3.8e-40, Sum P(6) = 3.8e-40
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 924 LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
L+ VKV + R Q GDK + RHG KG + EDMP+ G+ DI++NP +PSR
Sbjct: 1048 LKIVKVYLAVKRHIQPGDKMAGRHGNKGVISNVVPVEDMPYDQFGVPVDIVLNPLGVPSR 1107
Query: 984 MTIGQLIECIMGKVAAHMGKE 1004
M IGQ++E +G +G++
Sbjct: 1108 MNIGQILETHLGMACRGIGEK 1128
Score = 130 (50.8 bits), Expect = 3.8e-40, Sum P(6) = 3.8e-40
Identities = 43/153 (28%), Positives = 75/153 (49%)
Query: 385 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
G+ DD DH GN+R+ G + FR+ ++ R VR + + + + Q I A
Sbjct: 439 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLS--LGDLDAIMPQDLINA 496
Query: 445 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS--PIG--REGK 500
K I++ +K + +SQ +++ S ++H RR+++ P G RE
Sbjct: 497 KPISAAVKEFFGSSQ------------LSQFMDQNNPLSEVTHKRRISALGPGGLTRERA 544
Query: 501 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
+ R +H + +G +CP ETPEG GL+ +L+
Sbjct: 545 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 577
Score = 100 (40.3 bits), Expect = 3.8e-40, Sum P(6) = 3.8e-40
Identities = 44/170 (25%), Positives = 82/170 (48%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKED 838
+L G N +A ++GYN EDS+++++ F ++ + + K+G+ E+
Sbjct: 794 ELALGQNMRIAFMPWNGYNFEDSMLLSERVAIEDRFTTIHIQELTCIARDTKLGS---EE 850
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-----ISQDEAQGQAS 893
D N +G + KLD+ G+ G V+G D+++GK TP ++ +E +A
Sbjct: 851 I-TADIPN-VG--ESALSKLDEAGVVYIGAEVNGGDILVGKVTPKGETQLTPEEKLLRAI 906
Query: 894 RYTR----RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
+ +D S+ + +S G + V + T DG V+ R+V I Q+
Sbjct: 907 FGEKAADVKDSSLRVPNSVKGTIIDVQIFTR-DG---VEKDARAVEIEQM 952
Score = 75 (31.5 bits), Expect = 3.8e-40, Sum P(6) = 3.8e-40
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 687 DLVQARLHPE---EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
DLV R E +A A+ + ++ P I+ V AS+IPF +H+ + R S M +QA+
Sbjct: 633 DLVNCRHRNEFILKASAEVQ-YMDVSPQQIISVAASLIPFLEHDDANRALMGSNMQRQAV 691
Score = 68 (29.0 bits), Expect = 3.8e-40, Sum P(6) = 3.8e-40
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 115 KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 163
K ++R +TYSAPL V + V K V + ++ +V++G++P+M
Sbjct: 83 KECQIRGVTYSAPLRVKLRLVVYDKEAAAGTVKDIKE-QEVYMGEIPLM 130
Score = 66 (28.3 bits), Expect = 6.1e-40, Sum P(6) = 6.1e-40
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 177 KDLTE----LGECPY-DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN---KYAYVA 228
KD+ E +GE P G F+ING+E+V+++Q S + K + + K Y A
Sbjct: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174
Query: 229 EV----RSMAESQNRPPSTMFVRM 248
V S + + P +FVR+
Sbjct: 175 RVIPYRGSWLDFEFDPKDNLFVRI 198
Score = 43 (20.2 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 247 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
+M R KG S +PY + +P+ IV LG
Sbjct: 1066 KMAGRHGNKGVISNVVPVEDMPYDQFGVPVDIVLNPLG 1103
Score = 37 (18.1 bits), Expect = 7.9e-22, Sum P(4) = 7.9e-22
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 431 DNGK-DVNLQFAIKAKTITSG 450
DN K D + +F +K + IT G
Sbjct: 1020 DNIKEDFDKKFEVKRRKITQG 1040
Score = 37 (18.1 bits), Expect = 7.9e-22, Sum P(4) = 7.9e-22
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 814 GFFRSLFFRSYRDEEKKMGTL 834
G F +LFF S R + +G +
Sbjct: 384 GLFSNLFFASERYDLSTVGRM 404
>UNIPROTKB|I3L6M3 [details] [associations]
symbol:LOC100737037 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU683880 EMBL:CU914657
Ensembl:ENSSSCT00000030129 OMA:LLNTTEC Uniprot:I3L6M3
Length = 232
Score = 388 (141.6 bits), Expect = 1.0e-34, P = 1.0e-34
Identities = 83/219 (37%), Positives = 134/219 (61%)
Query: 738 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
MGKQAMG N + R+DTL Y+L YPQKP+V T+ +E + F +LPAG NA VA+ YSG
Sbjct: 1 MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSG 60
Query: 798 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
Y+ ED++++N++S+DRGF R L +++ + K+ + P ++
Sbjct: 61 YDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPVLDAATRKPIWRHEI 120
Query: 858 LDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG----QASRYTRRDHSISLRHSETGMV 912
LD DG+ PG +V + V++ K+ P ++Q +G Q +Y +D I+ + + +
Sbjct: 121 LDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQY--KDVPITYKGATDSYI 178
Query: 913 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
++V++++NA+ +K+ +R R P+IGDKFSSRHGQKG
Sbjct: 179 EKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 217
>UNIPROTKB|P0C501 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522331 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218611
ProteinModelPortal:P0C501 Gramene:P0C501 Genevestigator:P0C501
Uniprot:P0C501
Length = 1075
Score = 301 (111.0 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 69/208 (33%), Positives = 106/208 (50%)
Query: 927 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
V+V + R ++GDK + RHG KG + ++DMP+ +G D++ NP +PSRM +
Sbjct: 809 VRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 868
Query: 987 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL-----HKCGYQMRG---FETMY-- 1036
GQ+ E +G + K PF + S+ L ++ Q + FE Y
Sbjct: 869 GQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPG 928
Query: 1037 -----NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
+G TG + +G +Y +L H VD+KIH R GP ++T+QP GR++ GG
Sbjct: 929 KSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQ 988
Query: 1092 RFGEMERDCMIAHGASHFLKERLFDQSD 1119
R GEME + G +H L+E L +SD
Sbjct: 989 RIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 218 (81.8 bits), Expect = 9.1e-21, Sum P(4) = 9.1e-21
Identities = 70/256 (27%), Positives = 117/256 (45%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY--RDEEKKMGTLVKED 838
+L G N +VA + GYN ED+V++++ + + S R Y + + G+ K
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDE---AQGQASR 894
P + +R+ LD +G+ G+ V D+++GK TP I+ + A+ R
Sbjct: 716 KEIPHLEEHL-LRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 895 Y-------TRRDHSISLRHSETGMVDQVLLTTNADGLRF-VKVRVRSVRIPQIGDKFSSR 946
T ++ S+ L G V V D L V+V + R ++GDK + R
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR-DPLDIMVRVYILQKREIKVGDKVAGR 828
Query: 947 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
HG KG + ++DMP+ +G D++ NP +PSRM +GQ+ E +G + K
Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888
Query: 1007 ATPFTDVTVDNISKAL 1022
PF + S+ L
Sbjct: 889 IAPFDERYEQEASRKL 904
Score = 110 (43.8 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 389 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 448
+DD +H NKR+ LL F + +L V+ +++ Q + T T
Sbjct: 303 DDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLV-TPTST 361
Query: 449 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKLA--KP 504
S L L T GT +SQV ++ + H R+++ P G G+ A +
Sbjct: 362 SIL---LITT---YETFFGTYP-LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRS 414
Query: 505 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV--GSAAYPILEFLEE 553
R +H S +G +CP +T EG GL +LA+ I GS P E E+
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 58 (25.5 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 708 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
I P + S+IPF +HN + R S M +QA+
Sbjct: 526 IFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
Score = 48 (22.0 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 176 EKDLTELGECPYDQG-GYFIINGSEKVLIAQEKMSTNHVY 214
+K +G P G FIING +++I Q +S Y
Sbjct: 93 QKQTISIGNIPIMNSLGTFIINGIYRIVINQILLSPGIYY 132
Score = 46 (21.3 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 121 NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 163
+LTYS+ LYV R+I G D ++ T + IG +PIM
Sbjct: 73 SLTYSSELYVSA--RLIF-GFDVQKQT-------ISIGNIPIM 105
Score = 37 (18.1 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 81 SDFAETIYKISFGQIYLSKPMMTE 104
S+ E + +S+ +I+LS P E
Sbjct: 187 SNLKEILDNVSYPEIFLSFPNAKE 210
>UNIPROTKB|P0C502 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522329 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 ProtClustDB:CHL00001
RefSeq:YP_654206.1 ProteinModelPortal:P0C502 GeneID:4126922
Gramene:P0C502 Uniprot:P0C502
Length = 1075
Score = 301 (111.0 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 69/208 (33%), Positives = 106/208 (50%)
Query: 927 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
V+V + R ++GDK + RHG KG + ++DMP+ +G D++ NP +PSRM +
Sbjct: 809 VRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 868
Query: 987 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL-----HKCGYQMRG---FETMY-- 1036
GQ+ E +G + K PF + S+ L ++ Q + FE Y
Sbjct: 869 GQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPG 928
Query: 1037 -----NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
+G TG + +G +Y +L H VD+KIH R GP ++T+QP GR++ GG
Sbjct: 929 KSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQ 988
Query: 1092 RFGEMERDCMIAHGASHFLKERLFDQSD 1119
R GEME + G +H L+E L +SD
Sbjct: 989 RIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 218 (81.8 bits), Expect = 9.1e-21, Sum P(4) = 9.1e-21
Identities = 70/256 (27%), Positives = 117/256 (45%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY--RDEEKKMGTLVKED 838
+L G N +VA + GYN ED+V++++ + + S R Y + + G+ K
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDE---AQGQASR 894
P + +R+ LD +G+ G+ V D+++GK TP I+ + A+ R
Sbjct: 716 KEIPHLEEHL-LRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 895 Y-------TRRDHSISLRHSETGMVDQVLLTTNADGLRF-VKVRVRSVRIPQIGDKFSSR 946
T ++ S+ L G V V D L V+V + R ++GDK + R
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR-DPLDIMVRVYILQKREIKVGDKVAGR 828
Query: 947 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
HG KG + ++DMP+ +G D++ NP +PSRM +GQ+ E +G + K
Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888
Query: 1007 ATPFTDVTVDNISKAL 1022
PF + S+ L
Sbjct: 889 IAPFDERYEQEASRKL 904
Score = 110 (43.8 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 389 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 448
+DD +H NKR+ LL F + +L V+ +++ Q + T T
Sbjct: 303 DDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLV-TPTST 361
Query: 449 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKLA--KP 504
S L L T GT +SQV ++ + H R+++ P G G+ A +
Sbjct: 362 SIL---LITT---YETFFGTYP-LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRS 414
Query: 505 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV--GSAAYPILEFLEE 553
R +H S +G +CP +T EG GL +LA+ I GS P E E+
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 58 (25.5 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 708 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
I P + S+IPF +HN + R S M +QA+
Sbjct: 526 IFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
Score = 48 (22.0 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 176 EKDLTELGECPYDQG-GYFIINGSEKVLIAQEKMSTNHVY 214
+K +G P G FIING +++I Q +S Y
Sbjct: 93 QKQTISIGNIPIMNSLGTFIINGIYRIVINQILLSPGIYY 132
Score = 46 (21.3 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 121 NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 163
+LTYS+ LYV R+I G D ++ T + IG +PIM
Sbjct: 73 SLTYSSELYVSA--RLIF-GFDVQKQT-------ISIGNIPIM 105
Score = 37 (18.1 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 81 SDFAETIYKISFGQIYLSKPMMTE 104
S+ E + +S+ +I+LS P E
Sbjct: 187 SNLKEILDNVSYPEIFLSFPNAKE 210
>UNIPROTKB|P0C503 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901
EMBL:AY522330 GenomeReviews:AY522330_GR GO:GO:0009295 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:CHL00001 PIR:JQ0213 RefSeq:NP_039373.1
ProteinModelPortal:P0C503 STRING:P0C503
EnsemblPlants:LOC_Osp1g00240.1 GeneID:3131432 KEGG:osa:3131432
Gramene:P0C503 OMA:HFLVSEK Uniprot:P0C503
Length = 1075
Score = 301 (111.0 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 69/208 (33%), Positives = 106/208 (50%)
Query: 927 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
V+V + R ++GDK + RHG KG + ++DMP+ +G D++ NP +PSRM +
Sbjct: 809 VRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 868
Query: 987 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL-----HKCGYQMRG---FETMY-- 1036
GQ+ E +G + K PF + S+ L ++ Q + FE Y
Sbjct: 869 GQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPG 928
Query: 1037 -----NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
+G TG + +G +Y +L H VD+KIH R GP ++T+QP GR++ GG
Sbjct: 929 KSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQ 988
Query: 1092 RFGEMERDCMIAHGASHFLKERLFDQSD 1119
R GEME + G +H L+E L +SD
Sbjct: 989 RIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 218 (81.8 bits), Expect = 9.1e-21, Sum P(4) = 9.1e-21
Identities = 70/256 (27%), Positives = 117/256 (45%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY--RDEEKKMGTLVKED 838
+L G N +VA + GYN ED+V++++ + + S R Y + + G+ K
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDE---AQGQASR 894
P + +R+ LD +G+ G+ V D+++GK TP I+ + A+ R
Sbjct: 716 KEIPHLEEHL-LRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 895 Y-------TRRDHSISLRHSETGMVDQVLLTTNADGLRF-VKVRVRSVRIPQIGDKFSSR 946
T ++ S+ L G V V D L V+V + R ++GDK + R
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR-DPLDIMVRVYILQKREIKVGDKVAGR 828
Query: 947 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
HG KG + ++DMP+ +G D++ NP +PSRM +GQ+ E +G + K
Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888
Query: 1007 ATPFTDVTVDNISKAL 1022
PF + S+ L
Sbjct: 889 IAPFDERYEQEASRKL 904
Score = 110 (43.8 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 389 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 448
+DD +H NKR+ LL F + +L V+ +++ Q + T T
Sbjct: 303 DDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLV-TPTST 361
Query: 449 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKLA--KP 504
S L L T GT +SQV ++ + H R+++ P G G+ A +
Sbjct: 362 SIL---LITT---YETFFGTYP-LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRS 414
Query: 505 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV--GSAAYPILEFLEE 553
R +H S +G +CP +T EG GL +LA+ I GS P E E+
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 58 (25.5 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 708 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
I P + S+IPF +HN + R S M +QA+
Sbjct: 526 IFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
Score = 48 (22.0 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 176 EKDLTELGECPYDQG-GYFIINGSEKVLIAQEKMSTNHVY 214
+K +G P G FIING +++I Q +S Y
Sbjct: 93 QKQTISIGNIPIMNSLGTFIINGIYRIVINQILLSPGIYY 132
Score = 46 (21.3 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 121 NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 163
+LTYS+ LYV R+I G D ++ T + IG +PIM
Sbjct: 73 SLTYSSELYVSA--RLIF-GFDVQKQT-------ISIGNIPIM 105
Score = 37 (18.1 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 81 SDFAETIYKISFGQIYLSKPMMTE 104
S+ E + +S+ +I+LS P E
Sbjct: 187 SNLKEILDNVSYPEIFLSFPNAKE 210
>UNIPROTKB|Q6ENI4 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AP006728 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:YP_052739.1 ProteinModelPortal:Q6ENI4
GeneID:2885962 Gramene:Q6ENI4 ProtClustDB:CHL00001 Uniprot:Q6ENI4
Length = 1075
Score = 301 (111.0 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 69/208 (33%), Positives = 106/208 (50%)
Query: 927 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
V+V + R ++GDK + RHG KG + ++DMP+ +G D++ NP +PSRM +
Sbjct: 809 VRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 868
Query: 987 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL-----HKCGYQMRG---FETMY-- 1036
GQ+ E +G + K PF + S+ L ++ Q + FE Y
Sbjct: 869 GQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPG 928
Query: 1037 -----NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
+G TG + +G +Y +L H VD+KIH R GP ++T+QP GR++ GG
Sbjct: 929 KSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQ 988
Query: 1092 RFGEMERDCMIAHGASHFLKERLFDQSD 1119
R GEME + G +H L+E L +SD
Sbjct: 989 RIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 218 (81.8 bits), Expect = 9.1e-21, Sum P(4) = 9.1e-21
Identities = 70/256 (27%), Positives = 117/256 (45%)
Query: 781 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY--RDEEKKMGTLVKED 838
+L G N +VA + GYN ED+V++++ + + S R Y + + G+ K
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 839 FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDE---AQGQASR 894
P + +R+ LD +G+ G+ V D+++GK TP I+ + A+ R
Sbjct: 716 KEIPHLEEHL-LRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 895 Y-------TRRDHSISLRHSETGMVDQVLLTTNADGLRF-VKVRVRSVRIPQIGDKFSSR 946
T ++ S+ L G V V D L V+V + R ++GDK + R
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR-DPLDIMVRVYILQKREIKVGDKVAGR 828
Query: 947 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
HG KG + ++DMP+ +G D++ NP +PSRM +GQ+ E +G + K
Sbjct: 829 HGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYR 888
Query: 1007 ATPFTDVTVDNISKAL 1022
PF + S+ L
Sbjct: 889 IAPFDERYEQEASRKL 904
Score = 110 (43.8 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 389 EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 448
+DD +H NKR+ LL F + +L V+ +++ Q + T T
Sbjct: 303 DDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLV-TPTST 361
Query: 449 SGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN--SPIGREGKLA--KP 504
S L L T GT +SQV ++ + H R+++ P G G+ A +
Sbjct: 362 SIL---LITT---YETFFGTYP-LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRS 414
Query: 505 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV--GSAAYPILEFLEE 553
R +H S +G +CP +T EG GL +LA+ I GS P E E+
Sbjct: 415 RDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 58 (25.5 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 708 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
I P + S+IPF +HN + R S M +QA+
Sbjct: 526 IFPFQYFSIGGSLIPFIEHNDANRALMSSNMQRQAV 561
Score = 48 (22.0 bits), Expect = 9.8e-30, Sum P(4) = 9.8e-30
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 176 EKDLTELGECPYDQG-GYFIINGSEKVLIAQEKMSTNHVY 214
+K +G P G FIING +++I Q +S Y
Sbjct: 93 QKQTISIGNIPIMNSLGTFIINGIYRIVINQILLSPGIYY 132
Score = 46 (21.3 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 121 NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 163
+LTYS+ LYV R+I G D ++ T + IG +PIM
Sbjct: 73 SLTYSSELYVSA--RLIF-GFDVQKQT-------ISIGNIPIM 105
Score = 37 (18.1 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 81 SDFAETIYKISFGQIYLSKPMMTE 104
S+ E + +S+ +I+LS P E
Sbjct: 187 SNLKEILDNVSYPEIFLSFPNAKE 210
>UNIPROTKB|H7C0D9 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
Ensembl:ENST00000458012 Bgee:H7C0D9 Uniprot:H7C0D9
Length = 308
Score = 283 (104.7 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 75/226 (33%), Positives = 116/226 (51%)
Query: 765 QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS- 823
Q PLV ++ P G NAIVA+ Y+GY+ ED++I+N++S +RGF ++S
Sbjct: 103 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 162
Query: 824 YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKT 880
+ D +K +K+ D S G++ G KLDDDGL G ++ D
Sbjct: 163 FIDLSEK----IKQG----DSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSY- 213
Query: 881 TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG---LRFVKVRVRSVRIP 937
++ + + Y +++ + VD + + +N G + V + +R R P
Sbjct: 214 --LNLNTGESFVMYYKSKENCV---------VDNIKVCSNDTGSGKFKCVCITMRVPRNP 262
Query: 938 QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
IGDKF+SRHGQKG + + EDMP+T G+ PDI+ NPH PSR
Sbjct: 263 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSR 308
>UNIPROTKB|P21421 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=NAS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0020011 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 PANTHER:PTHR20856:SF3
EMBL:X75544 EMBL:X95275 EMBL:X52177 PIR:S72282
ProteinModelPortal:P21421 GenomeReviews:X95275_GR Uniprot:P21421
Length = 1024
Score = 251 (93.4 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 109/423 (25%), Positives = 175/423 (41%)
Query: 785 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 844
G N +V Y GY ED++I+++ + + SL Y E + + +
Sbjct: 600 GNNLLVGYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIY---EISLNII--NNIPEICS 654
Query: 845 SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--P-ISQDEAQ--------GQAS 893
N M + + LD G+ GT + +++I K P I +++ G
Sbjct: 655 INLSKMYYKNIKHLDKYGIIKEGTYILANNILISKLMFMPFIFNNKSLINIINFLFGSKL 714
Query: 894 RYTRRDHSISLRHSETGMVDQVLLTTN------ADGLRFVKVRVRS--VRIPQIGDKFSS 945
R + IS H + G V ++ + N ++K R+ + Q+GDK +
Sbjct: 715 RIFKNKPIISTIH-DIGRVIKIEILPNHLYNKTEKNNIYLKFRIYIGIQKYLQLGDKICN 773
Query: 946 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
RHG KG + D+P+ I PDI ++ +IPSR+ IGQ+ E I G + ++
Sbjct: 774 RHGHKGIISYISEINDIPYLNNKIQPDIFISAISIPSRINIGQIFEGIYGLNSLYLNTRY 833
Query: 1006 ------DATPFTDVT-VDNISKALHKCGYQMRG-----FETMY--NGHTGRRLTAMIFLG 1051
+ + + + N K + + + + Y N TG + I L
Sbjct: 834 IISNNLNKNYYNNYNHIFNYYKYNYNNNFNINSKMSYNYNKYYLKNPFTGNMINNSICLN 893
Query: 1052 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 1111
YY +L HM+ DK R G LT+QP +G ++ GG RFGEME + A GAS+ K
Sbjct: 894 NIYYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEMEVWALEAFGASYLFK 953
Query: 1112 ERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 1171
E +SD + LK F N I I KL+ +EL +
Sbjct: 954 EFFTYKSDDIKSRKI----------LKNYLF------NNYKIKNTFISETFKLILKELQS 997
Query: 1172 MAI 1174
+AI
Sbjct: 998 LAI 1000
Score = 50 (22.7 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 713 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI-Y------VTNYQFRMDT-LAYVLYYP 764
+L ++IPF +N S RN M Q + I Y +TNY F ++ L +++
Sbjct: 470 LLSFIENLIPFIHYNDSIRNLMSIKMHTQIVPIIYPNLSNIITNYNFILNKYLNHLIISY 529
Query: 765 QKPLV 769
Q+ +V
Sbjct: 530 QEGIV 534
Score = 49 (22.3 bits), Expect = 2.0e-16, Sum P(4) = 2.0e-16
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 505 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
R+L + G + T EG CGLV L +++ +
Sbjct: 360 RELPRNILGYISLINTNEGLTCGLVNYLTTNIFLNL 395
Score = 46 (21.3 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 83 FAETIYKISFGQIYLSK 99
F + Y ISF IYL K
Sbjct: 420 FNKNFYNISFNNIYLKK 436
Score = 38 (18.4 bits), Expect = 2.0e-16, Sum P(4) = 2.0e-16
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 406 LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
+L GL++ + ++ + ++ K +N K++
Sbjct: 110 ILNGLYKTCIQLFKKNNKIFIIKFKNNNKNI 140
>UNIPROTKB|F8VRU2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR015712 Pfam:PF04561
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022585 ProteinModelPortal:F8VRU2
SMR:F8VRU2 Ensembl:ENST00000549569 ArrayExpress:F8VRU2 Bgee:F8VRU2
Uniprot:F8VRU2
Length = 170
Score = 188 (71.2 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 52/154 (33%), Positives = 80/154 (51%)
Query: 283 LGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGKRGATV----G 336
+G +D++I++ I + +M PSLEE Q Q AL YIG + G
Sbjct: 1 MGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGG 57
Query: 337 VTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYG 396
+ +I+ A+E+L +L HV +F K Y ++ R++L A G DDRD+YG
Sbjct: 58 GPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKVDDRDYYG 116
Query: 397 NKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 430
NKRL+LAG LL LF LF+K +++ + +
Sbjct: 117 NKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVI 150
>UNIPROTKB|C9JZW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007644 InterPro:IPR015712 Pfam:PF04563
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 HGNC:HGNC:9188 IPI:IPI00894524
ProteinModelPortal:C9JZW8 SMR:C9JZW8 STRING:C9JZW8
Ensembl:ENST00000433463 ArrayExpress:C9JZW8 Bgee:C9JZW8
Uniprot:C9JZW8
Length = 76
Score = 171 (65.3 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 31/51 (60%), Positives = 43/51 (84%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH G+
Sbjct: 20 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGE 70
>UNIPROTKB|I3LR52 [details] [associations]
symbol:I3LR52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR015712 Pfam:PF00562 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00690000102214 EMBL:CU683880
Ensembl:ENSSSCT00000028377 Uniprot:I3LR52
Length = 80
Score = 151 (58.2 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 962 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
MP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T F V ++ +
Sbjct: 1 MPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCED 60
Query: 1022 LHKCGYQMRGFETMYNGHTG 1041
L + GY G + + +G TG
Sbjct: 61 LVRHGYNYLGKDYVTSGITG 80
>UNIPROTKB|C9JMN3 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] InterPro:IPR007644
InterPro:IPR015712 Pfam:PF04563 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 EMBL:AC069307 GO:GO:0032549
HGNC:HGNC:9188 IPI:IPI00894248 ProteinModelPortal:C9JMN3 SMR:C9JMN3
STRING:C9JMN3 Ensembl:ENST00000450656 ArrayExpress:C9JMN3
Bgee:C9JMN3 Uniprot:C9JMN3
Length = 64
Score = 141 (54.7 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 26/36 (72%), Positives = 33/36 (91%)
Query: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDA 62
>UNIPROTKB|F8VRS3 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR015712 PANTHER:PTHR20856 GO:GO:0006351
GO:GO:0003899 EMBL:AC009721 GO:GO:0032549 EMBL:AC078992
EMBL:AC080012 HGNC:HGNC:30348 IPI:IPI01021275
ProteinModelPortal:F8VRS3 SMR:F8VRS3 Ensembl:ENST00000549195
ArrayExpress:F8VRS3 Bgee:F8VRS3 Uniprot:F8VRS3
Length = 54
Score = 115 (45.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 375 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 423
++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++
Sbjct: 1 MVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMK 48
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1195 1145 0.00092 123 3 11 22 0.37 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 95
No. of states in DFA: 625 (66 KB)
Total size of DFA: 500 KB (2233 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 91.46u 0.09s 91.55t Elapsed: 00:00:05
Total cpu time: 91.52u 0.10s 91.62t Elapsed: 00:00:05
Start: Tue May 21 02:25:26 2013 End: Tue May 21 02:25:31 2013