BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000996
         (1195 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255556051|ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
 gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
          Length = 1194

 Score = 2374 bits (6153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1151/1195 (96%), Positives = 1180/1195 (98%), Gaps = 2/1195 (0%)

Query: 2    MEDDYDYEEQ-HQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            MEDD +Y++  ++  E+++E+EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 1    MEDDQEYDQNLNEDYEDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            VDESADIEIRPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR
Sbjct: 61   VDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120

Query: 121  NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 180
            NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT
Sbjct: 121  NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 180

Query: 181  ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240
            ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP
Sbjct: 181  ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240

Query: 241  PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ 300
            PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 
Sbjct: 241  PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS 300

Query: 301  DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGT 360
            DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVT++KRIKYAKEILQKEMLPHVG 
Sbjct: 301  DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGV 360

Query: 361  GDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
            G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
Sbjct: 361  GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420

Query: 421  DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480
            DVR+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
Sbjct: 421  DVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT 480

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
Sbjct: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP+MLVKTLRRLRRRV
Sbjct: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRV 600

Query: 601  DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWH 660
            DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES E+GGWH
Sbjct: 601  DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWH 660

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASI 720
            DLVAKGFIEYIDTEEEETTMISMTI+DLVQAR++PEEAY+DTYTHCEIHPSLILGVCASI
Sbjct: 661  DLVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASI 720

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
Sbjct: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
            QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
Sbjct: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDH 900
            RPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q+EAQGQ++RYTRRDH
Sbjct: 841  RPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDH 900

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            SISLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
Sbjct: 901  SISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
            DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK
Sbjct: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020

Query: 1021 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080
            ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
Sbjct: 1021 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080

Query: 1081 PAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKN 1140
            PAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKN
Sbjct: 1081 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 1140

Query: 1141 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
            SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK D K +KD KKKGA
Sbjct: 1141 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK-DVKPTKDQKKKGA 1194


>gi|449433841|ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
 gi|449479313|ref|XP_004155566.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
          Length = 1199

 Score = 2374 bits (6153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1139/1178 (96%), Positives = 1162/1178 (98%), Gaps = 1/1178 (0%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            D+EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP
Sbjct: 23   DDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 82

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
            G QSD AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVI
Sbjct: 83   GHQSDVAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVI 142

Query: 138  KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 197
            KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING
Sbjct: 143  KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 202

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAESQNRPPSTMFVRMLSRTSAKGG
Sbjct: 203  SEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 262

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            SSGQYIRATLPYIR EIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFV
Sbjct: 263  SSGQYIRATLPYIRNEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 322

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQNQQVALDYIGKRG+TVGVT++KRIKYAKEILQKEMLPHVG G+FCETKKAYYFGYIIH
Sbjct: 323  IQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIH 382

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVN
Sbjct: 383  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN 442

Query: 438  LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
            LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR
Sbjct: 443  LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 502

Query: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
            EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE
Sbjct: 503  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 562

Query: 558  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
            NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL
Sbjct: 563  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 622

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRESPEDGGWHDLVAKGFIEYIDTEEEE
Sbjct: 623  RIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 682

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            TTMISMTI+DL+QAR++P EAY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 683  TTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 742

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG
Sbjct: 743  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 802

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK
Sbjct: 803  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 862

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLL 917
            LDDDGLAPPGTRVSGEDVIIGKTTPISQ+EAQGQA+RY+RRDHSISLRHSE G+VDQVLL
Sbjct: 863  LDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAARYSRRDHSISLRHSENGIVDQVLL 922

Query: 918  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
            TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP
Sbjct: 923  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 982

Query: 978  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1037
            HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN
Sbjct: 983  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1042

Query: 1038 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1097
            GHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME
Sbjct: 1043 GHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1102

Query: 1098 RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVH 1157
            RDCMIAHGA+HFLKERLFDQSDAYR+HVCE CGLIAIANLKK+SFECRGCKNKTDIVQV+
Sbjct: 1103 RDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVY 1162

Query: 1158 IPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
            IPYACKLLFQELMAMAIAPRM TKE  K  KD KKKG+
Sbjct: 1163 IPYACKLLFQELMAMAIAPRMFTKE-IKPLKDQKKKGS 1199


>gi|356558375|ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score = 2367 bits (6133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1126/1168 (96%), Positives = 1152/1168 (98%), Gaps = 2/1168 (0%)

Query: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDFAETI
Sbjct: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87

Query: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
            YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRV+KKGHDGEEVT
Sbjct: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVVKKGHDGEEVT 147

Query: 148  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
            ETQD TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 148  ETQDLTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207

Query: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 267
            MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS+KGGSSGQYIRATL
Sbjct: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL 267

Query: 268  PYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDY 327
            PYIRTEIPIIIVFRALGFVADKDILEHICYDF DT MMELLRPSLEEAFVIQNQQVALDY
Sbjct: 268  PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTLMMELLRPSLEEAFVIQNQQVALDY 327

Query: 328  IGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRR 387
            IGKRGATVGVT++KRIKYAKEILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRR
Sbjct: 328  IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 387

Query: 388  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 447
            AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 388  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 447

Query: 448  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507
            TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 448  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507

Query: 508  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567
            HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI
Sbjct: 508  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567

Query: 568  PQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 627
            PQATKIFVNGCW+GIHRDP+MLV+TLR+LRRRVDVNTEVGVVRDI LKELRIYTDYGRCS
Sbjct: 568  PQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIILKELRIYTDYGRCS 627

Query: 628  RPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 687
            RPLFIV+KQRLLIKK+DI ALQQRESPEDGGWHDLV+KGFIEYIDTEEEETTMISMTIND
Sbjct: 628  RPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTIND 687

Query: 688  LVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 747
            LVQAR++PE+AYA TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 688  LVQARINPEDAYAGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 747

Query: 748  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 807
            TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN
Sbjct: 748  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 807

Query: 808  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 867
            QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 808  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPG 867

Query: 868  TRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 927
            TRVSGEDVIIGKTTPISQ+EAQGQA RYTRRDHSISLRHSETG+VDQVLLTTNADGLRFV
Sbjct: 868  TRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFV 927

Query: 928  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
            KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 928  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987

Query: 988  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1047
            QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AM
Sbjct: 988  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 1047

Query: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 1107
            IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+
Sbjct: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1107

Query: 1108 HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1167
            HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQ
Sbjct: 1108 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ 1167

Query: 1168 ELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
            ELMAMAIAPRMLTKE   ++ + KKKGA
Sbjct: 1168 ELMAMAIAPRMLTKE--VKTTNQKKKGA 1193


>gi|356530409|ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score = 2365 bits (6129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1125/1168 (96%), Positives = 1152/1168 (98%), Gaps = 3/1168 (0%)

Query: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDFAETI
Sbjct: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87

Query: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
            YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEVT
Sbjct: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVT 147

Query: 148  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
            E QDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 148  EAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207

Query: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 267
            MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS+KGGSSGQYIRATL
Sbjct: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL 267

Query: 268  PYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDY 327
            PYIRTEIPIIIVFRALGFVADKDILEHICYDF  TQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 268  PYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELLRPSLEEAFVIQNQQVALDY 327

Query: 328  IGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRR 387
            IGKRGATVGVT++KRIKYAKEILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRR
Sbjct: 328  IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 387

Query: 388  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 447
            AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 388  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 447

Query: 448  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507
            TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 448  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507

Query: 508  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567
            HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI
Sbjct: 508  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567

Query: 568  PQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 627
            PQATKIFVNGCW+GIHRDP+MLV+TL++LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS
Sbjct: 568  PQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 627

Query: 628  RPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 687
            RPLFIV+KQRLLIKK+DI ALQQRESPEDGGWHDLV+KGFIEYIDTEEEETTMISMTIND
Sbjct: 628  RPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTIND 687

Query: 688  LVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 747
            LVQAR++PE+AY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV
Sbjct: 688  LVQARINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 747

Query: 748  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 807
            TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV+IACYSGYNQEDSVIMN
Sbjct: 748  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVSIACYSGYNQEDSVIMN 807

Query: 808  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 867
            QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPG
Sbjct: 808  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPG 867

Query: 868  TRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 927
            TRVSGEDVIIGKTTPISQ+EAQGQA RYTRRDHSISLRHSETG+VDQVLLTTNADGLRFV
Sbjct: 868  TRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFV 927

Query: 928  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
            KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG
Sbjct: 928  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987

Query: 988  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1047
            QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AM
Sbjct: 988  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAM 1047

Query: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 1107
            IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+
Sbjct: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1107

Query: 1108 HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1167
            HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQV+IPYACKLLFQ
Sbjct: 1108 HFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQ 1167

Query: 1168 ELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
            ELMAMAIAPRMLTKE       ++KKGA
Sbjct: 1168 ELMAMAIAPRMLTKE---VKTTNQKKGA 1192


>gi|225446351|ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera]
 gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera]
 gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera]
          Length = 1193

 Score = 2364 bits (6126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1124/1173 (95%), Positives = 1153/1173 (98%), Gaps = 1/1173 (0%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG+QSD
Sbjct: 22   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSD 81

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
            F ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR+IKKGHD
Sbjct: 82   FLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHD 141

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
             EEVTETQ+FTKVFIGKVPIMLRSSYCT+YQNSEKDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 142  LEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVL 201

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQY
Sbjct: 202  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQY 261

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 262  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 321

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
            VALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVG G++CETKKAYYFGYIIHRLLLC
Sbjct: 322  VALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 381

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
            ALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI
Sbjct: 382  ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 441

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA
Sbjct: 442  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 501

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEI
Sbjct: 502  KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEI 561

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
            SPAVIPQ+TKIFVNGCWVGIHR+P++LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTD
Sbjct: 562  SPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTD 621

Query: 623  YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMIS 682
            YGRCSRPLFIVEKQRLLIKKRDI ALQ RESPEDGGWHDLV+KGFIEY+DTEEEETTMIS
Sbjct: 622  YGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMIS 681

Query: 683  MTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742
            MTINDL+ ARL+PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 682  MTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 741

Query: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 742  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 801

Query: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDG
Sbjct: 802  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDG 861

Query: 863  LAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
            LAPPGTRVSGEDVIIGKTTPISQD++QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNAD
Sbjct: 862  LAPPGTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNAD 921

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS
Sbjct: 922  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 981

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 982  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1041

Query: 1043 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102
            RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1042 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1101

Query: 1103 AHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1162
            AHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC
Sbjct: 1102 AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1161

Query: 1163 KLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
            KLLFQELMAMAIAPRMLTKE  K  KD KKKGA
Sbjct: 1162 KLLFQELMAMAIAPRMLTKE-VKPPKDQKKKGA 1193


>gi|350534526|ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
 gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
            polypeptide
 gi|1049068|gb|AAC49273.1| RNA polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score = 2363 bits (6125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1142/1194 (95%), Positives = 1171/1194 (98%), Gaps = 5/1194 (0%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            MED+Y    + Q   +D+EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 3    MEDEY----EPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            DESADIEIRPESQHNPG QSDFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRN
Sbjct: 59   DESADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRN 118

Query: 122  LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 181
            LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE
Sbjct: 119  LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 178

Query: 182  LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP 241
            LGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMA++QNRPP
Sbjct: 179  LGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPP 238

Query: 242  STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF D
Sbjct: 239  STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFND 298

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
            TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR+KRIKYAKEILQKEMLPHVG G
Sbjct: 299  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVG 358

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            ++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD
Sbjct: 359  EYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 418

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 481
            VR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY
Sbjct: 419  VRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 478

Query: 482  ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
            ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG
Sbjct: 479  ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 538

Query: 542  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
            SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDP+MLV+TLRRLRRRVD
Sbjct: 539  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVD 598

Query: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 661
            VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL+IKK+DI  LQQRESP++GGWHD
Sbjct: 599  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHD 658

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
            LVAKG+IEYIDTEEEETTMISMTINDLVQARL+P +AY+DTYTHCEIHPSLILGVCASII
Sbjct: 659  LVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASII 718

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 719  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 778

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR
Sbjct: 779  LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 838

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 901
            PDR++TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+AQGQASRYTR+DHS
Sbjct: 839  PDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHS 898

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
             SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 899  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 958

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA
Sbjct: 959  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1018

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
            LHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
Sbjct: 1019 LHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1078

Query: 1082 AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNS 1141
            AEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNS
Sbjct: 1079 AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS 1138

Query: 1142 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
            FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK D K +KD KKKGA
Sbjct: 1139 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK-DVKLAKDQKKKGA 1191


>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 1213

 Score = 2358 bits (6112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1126/1186 (94%), Positives = 1154/1186 (97%), Gaps = 19/1186 (1%)

Query: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
            AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDFAETI
Sbjct: 29   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 88

Query: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
            YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEVT
Sbjct: 89   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVT 148

Query: 148  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
            ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 149  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 208

Query: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 267
            MSTNHVYVFKKRQPNKYAYV EVRSMAESQNRPPSTMFVRMLSR SAKGGSSGQYIRATL
Sbjct: 209  MSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRATL 268

Query: 268  PYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDY 327
            PYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 269  PYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDY 328

Query: 328  IGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRR 387
            IGKRG+TVGVT++KRIKYAK+ILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRR
Sbjct: 329  IGKRGSTVGVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 388

Query: 388  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 447
            AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 389  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 448

Query: 448  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507
            TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 449  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 508

Query: 508  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE------- 560
            HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE       
Sbjct: 509  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEVLVISFI 568

Query: 561  -EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRR----------VDVNTEVGVV 609
             EISPAVIPQATKIFVNGCW+GIHRDP+MLV+TLR+LRRR          VDVNTEVGVV
Sbjct: 569  KEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRFSAEGFDVVQVDVNTEVGVV 628

Query: 610  RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIE 669
            RDIRLKELRIYTDYGRCSRPLFIV+KQRLLIKK+DI +LQQRESPEDGGWHDLV+KGFIE
Sbjct: 629  RDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEDGGWHDLVSKGFIE 688

Query: 670  YIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 729
            YIDTEEEETTMISMTINDLVQARL+PEEAY+DTYTHCEIHPSLILGVCASIIPFPDHNQS
Sbjct: 689  YIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQS 748

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI
Sbjct: 749  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 808

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMG
Sbjct: 809  VAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMG 868

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSET 909
            MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQ+E QGQA+RY++RDHSISLRHSET
Sbjct: 869  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEQQGQAARYSKRDHSISLRHSET 928

Query: 910  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
            G+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI
Sbjct: 929  GIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 988

Query: 970  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1029
            TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM
Sbjct: 989  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1048

Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1089
            RGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG
Sbjct: 1049 RGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1108

Query: 1090 GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN 1149
            GLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKN
Sbjct: 1109 GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKN 1168

Query: 1150 KTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
            KTDIVQV+IPYACKLLFQELMAMAIAPRMLTKE  K  KD KKKGA
Sbjct: 1169 KTDIVQVYIPYACKLLFQELMAMAIAPRMLTKE-VKAIKDQKKKGA 1213


>gi|70794966|gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score = 2350 bits (6090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1136/1176 (96%), Positives = 1162/1176 (98%)

Query: 5    DYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
            D++ EE++    EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES
Sbjct: 2    DFEEEEEYDPTMEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 61

Query: 65   ADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 124
            ADIEIRPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY
Sbjct: 62   ADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 121

Query: 125  SAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 184
            SAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE
Sbjct: 122  SAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 181

Query: 185  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTM 244
            CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTM
Sbjct: 182  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTM 241

Query: 245  FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM 304
            FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQM
Sbjct: 242  FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQM 301

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVT++KRIKYAKEILQKEMLPHVG G++C
Sbjct: 302  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYC 361

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 
Sbjct: 362  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRG 421

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST 484
            YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST
Sbjct: 422  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST 481

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA
Sbjct: 482  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 541

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
            YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP+MLV+TLRRLRRRVDVNT
Sbjct: 542  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNT 601

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVA 664
            EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK++DI ALQQRE+PEDGGWHDLVA
Sbjct: 602  EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVA 661

Query: 665  KGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFP 724
            KGFIEYIDTEEEETTMISMTINDLV ARL+PEEAY++TYTHCEIHPSLILGVCASIIPFP
Sbjct: 662  KGFIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFP 721

Query: 725  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
            DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPA
Sbjct: 722  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPA 781

Query: 785  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 844
            GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR
Sbjct: 782  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 841

Query: 845  SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISL 904
            +NTMGMRHGSYDKLDDDGLAPPGTRVSGEDV+IGKTTPI+QDEAQG A+RYTRRDHS SL
Sbjct: 842  ANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSL 901

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW
Sbjct: 902  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 961

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1024
            T+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK
Sbjct: 962  TMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1021

Query: 1025 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1084
            CGYQMRGFETMYNGHTGRRLT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG
Sbjct: 1022 CGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1081

Query: 1085 RSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFEC 1144
            RSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYR+HVCE CGLIAIANLKKNSFEC
Sbjct: 1082 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFEC 1141

Query: 1145 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            RGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLT
Sbjct: 1142 RGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1177


>gi|68300814|gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score = 2350 bits (6089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1120/1174 (95%), Positives = 1155/1174 (98%), Gaps = 1/1174 (0%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            +I+QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 
Sbjct: 28   DISQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQP 87

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGH
Sbjct: 88   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGH 147

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKV
Sbjct: 148  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKV 207

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 261
            LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQ
Sbjct: 208  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAEAQNRPPSTMFVRMLSRTSAKGGSSGQ 267

Query: 262  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 321
            YIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC++  DTQMMELLRPSLEEAFVIQNQ
Sbjct: 268  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICFNSSDTQMMELLRPSLEEAFVIQNQ 327

Query: 322  QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 381
            QVALDYIGKRG+TVGVT++KRIKYAKEILQKEMLPHVG G++CETKKAYYFGYIIHRLLL
Sbjct: 328  QVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLL 387

Query: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 441
            CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQF 
Sbjct: 388  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFX 447

Query: 442  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501
            IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLBSPIGREGKL
Sbjct: 448  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLBSPIGREGKL 507

Query: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561
            AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE
Sbjct: 508  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 567

Query: 562  ISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 621
            ISPAVIPQATKIFVNG WVGIHR+P+MLV TLRRLRRRVDVNTEVGVVRDIRLKELRIYT
Sbjct: 568  ISPAVIPQATKIFVNGLWVGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 627

Query: 622  DYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMI 681
            DYGRCSRPLFIVEKQRLLIKK+D+ ALQQRESP+DGGWH+LVAKGFIEYIDTEEEETTMI
Sbjct: 628  DYGRCSRPLFIVEKQRLLIKKKDVQALQQRESPDDGGWHELVAKGFIEYIDTEEEETTMI 687

Query: 682  SMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741
            SMTINDL+ A+++P EAY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 688  SMTINDLLSAKVNPTEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 747

Query: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801
            AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 748  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 807

Query: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 861
            DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD
Sbjct: 808  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 867

Query: 862  GLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
            GLAPPGTR SGEDVIIGKTTPIS D+AQGQA+RYT+RDHS SLRHSETGMVDQVLLTTNA
Sbjct: 868  GLAPPGTRCSGEDVIIGKTTPISPDDAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNA 927

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIP
Sbjct: 928  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIP 987

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 988  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1047

Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
            RRL++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM
Sbjct: 1048 RRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1107

Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
            IAHGA+HFLKERLFDQSDAYR+HVCE CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA
Sbjct: 1108 IAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1167

Query: 1162 CKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
            CKLLFQELM+MAIAPRMLTK D KQSK+ +KK A
Sbjct: 1168 CKLLFQELMSMAIAPRMLTK-DIKQSKEQRKKAA 1200


>gi|68300812|gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score = 2345 bits (6077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1129/1173 (96%), Positives = 1158/1173 (98%), Gaps = 1/1173 (0%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSD
Sbjct: 24   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 83

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
            FAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 84   FAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 143

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
            GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVL
Sbjct: 144  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVL 203

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            IAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY
Sbjct: 204  IAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 263

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
            IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 264  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQ 323

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
            VALDYIGKRGATVGVT++KRIKYAKEILQKEMLPHVG G++CETKKAYYFGYIIHRLLLC
Sbjct: 324  VALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 383

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAI
Sbjct: 384  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 443

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA
Sbjct: 444  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 503

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE GTENFEEI
Sbjct: 504  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEXGTENFEEI 563

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
            SPAVIPQATKIFVBG W+GIHRDP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTD
Sbjct: 564  SPAVIPQATKIFVBGTWMGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 623

Query: 623  YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMIS 682
            YGRCSRPLFIVEKQ+LLIKK+DI  LQQRE+PE+GGWHDLVAKG+IEYIDTEEEETTMIS
Sbjct: 624  YGRCSRPLFIVEKQKLLIKKKDIQQLQQRETPEEGGWHDLVAKGYIEYIDTEEEETTMIS 683

Query: 683  MTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742
            MTINDLVQA ++PE+AY+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 684  MTINDLVQASINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 743

Query: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802
            MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQED
Sbjct: 744  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQED 803

Query: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR++TMGMRHGSYDKLDDDG
Sbjct: 804  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDG 863

Query: 863  LAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
            LAPPGTRVSGEDVIIGKTTPISQD+AQGQASRYTR+DHS SLRHSETGMVDQVLLTTNAD
Sbjct: 864  LAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNAD 923

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPS
Sbjct: 924  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPS 983

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 984  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1043

Query: 1043 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102
            RL AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1044 RLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1103

Query: 1103 AHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1162
            AHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC
Sbjct: 1104 AHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1163

Query: 1163 KLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
            KLLFQELMAMAIAPRMLTK D KQ++D KKKGA
Sbjct: 1164 KLLFQELMAMAIAPRMLTK-DVKQARDQKKKGA 1195


>gi|297799890|ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297313665|gb|EFH44088.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1188

 Score = 2336 bits (6055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1120/1175 (95%), Positives = 1150/1175 (97%)

Query: 7    DYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            +YE + Q  E+D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD
Sbjct: 5    EYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 64

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            IEIRPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA
Sbjct: 65   IEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 124

Query: 127  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECP
Sbjct: 125  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECP 184

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPPSTMFV
Sbjct: 185  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFV 244

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            RML+R SAKGGSSGQYIR TLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMME
Sbjct: 245  RMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMME 304

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            LLRPSLEEAFVIQNQ VALDYIGKRGATVGVT++KRIKYAK+ILQKEMLPHVG G++CET
Sbjct: 305  LLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYAKDILQKEMLPHVGIGEYCET 364

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            KKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YV
Sbjct: 365  KKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYV 424

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 486
            QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS
Sbjct: 425  QKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 484

Query: 487  HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 546
            HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP
Sbjct: 485  HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 544

Query: 547  ILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEV 606
            ILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKTLRRLRRRVDVNTEV
Sbjct: 545  ILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEV 604

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
            GVVRDIRLKELRIYTDYGRCSRPLFIV+ QRLLIKKRDI ALQQRES E+ GWH LVAKG
Sbjct: 605  GVVRDIRLKELRIYTDYGRCSRPLFIVDNQRLLIKKRDIYALQQRESAEEDGWHHLVAKG 664

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
            FIEYIDTEEEETTMISMTI+DLVQARL PEEAY + YTHCEIHPSLILGVCASIIPFPDH
Sbjct: 665  FIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDH 724

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
Sbjct: 725  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 784

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +
Sbjct: 785  NAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGS 844

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRH 906
            TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ+SRYTRRDHSISLRH
Sbjct: 845  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRH 904

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 905  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTI 964

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
Sbjct: 965  EGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1024

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            YQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1025 YQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1084

Query: 1087 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1146
            RDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRG
Sbjct: 1085 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRG 1144

Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            CKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTK
Sbjct: 1145 CKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTK 1179


>gi|15234572|ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
 gi|21542437|sp|P38420.2|RPB2_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
            polypeptide; AltName: Full=Protein EMBRYO DEFECTIVE 1989
 gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
            [Arabidopsis thaliana]
 gi|7268968|emb|CAB81278.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
            [Arabidopsis thaliana]
 gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
          Length = 1188

 Score = 2332 bits (6044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1118/1175 (95%), Positives = 1149/1175 (97%)

Query: 7    DYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            +YE + Q  E+D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD
Sbjct: 5    EYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 64

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            IEIRPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA
Sbjct: 65   IEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 124

Query: 127  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECP
Sbjct: 125  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECP 184

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPPSTMFV
Sbjct: 185  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFV 244

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            RML+R SAKGGSSGQYIR TLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMME
Sbjct: 245  RMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMME 304

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            LLRPSLEEAFVIQNQ VALDYIGKRGATVGVT++KRIKYA++ILQKEMLPHVG G+ CET
Sbjct: 305  LLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCET 364

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            KKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YV
Sbjct: 365  KKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYV 424

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 486
            QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS
Sbjct: 425  QKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 484

Query: 487  HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 546
            HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP
Sbjct: 485  HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 544

Query: 547  ILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEV 606
            ILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKTLRRLRRRVDVNTEV
Sbjct: 545  ILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEV 604

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
            GVVRDIRLKELRIYTDYGRCSRPLFIV+ Q+LLIKKRDI ALQQRES E+ GWH LVAKG
Sbjct: 605  GVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKG 664

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
            FIEYIDTEEEETTMISMTI+DLVQARL PEEAY + YTHCEIHPSLILGVCASIIPFPDH
Sbjct: 665  FIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDH 724

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
Sbjct: 725  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 784

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +
Sbjct: 785  NAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGS 844

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRH 906
            TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ+SRYTRRDHSISLRH
Sbjct: 845  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRH 904

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 905  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTI 964

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
Sbjct: 965  EGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1024

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            YQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1025 YQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1084

Query: 1087 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1146
            RDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRG
Sbjct: 1085 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRG 1144

Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            CKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTK
Sbjct: 1145 CKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTK 1179


>gi|16486|emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score = 2327 bits (6030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1116/1175 (94%), Positives = 1148/1175 (97%)

Query: 7    DYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            +YE + Q  E+D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD
Sbjct: 5    EYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 64

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            IEIRPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA
Sbjct: 65   IEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 124

Query: 127  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECP
Sbjct: 125  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECP 184

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPPSTMFV
Sbjct: 185  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFV 244

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            RML+R SAKGGSSGQYIR TLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMME
Sbjct: 245  RMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMME 304

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            LLRPSLEEAFVIQNQ VALDYIGKRGATVGVT++KRIKYA++ILQKEML +VG G+ CET
Sbjct: 305  LLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLLYVGIGEHCET 364

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            KKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YV
Sbjct: 365  KKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYV 424

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 486
            QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS
Sbjct: 425  QKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 484

Query: 487  HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 546
            HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP
Sbjct: 485  HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 544

Query: 547  ILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEV 606
            ILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKTLRRLRRRVDVNTEV
Sbjct: 545  ILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEV 604

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
            GVVRDIRLKELRIYTDYGRCSRPLFIV+ Q+LLIKKRDI ALQQRES E+ GWH LVAKG
Sbjct: 605  GVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKG 664

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
            FIEYIDTEEEETTMISMTI+DLVQARL PEEAY + YTHCEIHPSLILGVCASIIPFPDH
Sbjct: 665  FIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDH 724

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
Sbjct: 725  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 784

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +
Sbjct: 785  NAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGS 844

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRH 906
            TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ+SRYTRRDHSISLRH
Sbjct: 845  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRH 904

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 905  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTI 964

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
Sbjct: 965  EGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1024

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            YQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1025 YQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1084

Query: 1087 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1146
            RDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRG
Sbjct: 1085 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRG 1144

Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            CKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTK
Sbjct: 1145 CKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTK 1179


>gi|16488|emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score = 2325 bits (6024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1115/1175 (94%), Positives = 1147/1175 (97%)

Query: 7    DYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            +YE + Q  E+D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD
Sbjct: 5    EYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 64

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            IEIRPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA
Sbjct: 65   IEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 124

Query: 127  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECP
Sbjct: 125  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECP 184

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPPSTMFV
Sbjct: 185  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFV 244

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            RML+R SAKGGSSGQYIR TLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMME
Sbjct: 245  RMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMME 304

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            LLRPSLEEAFVIQNQ VALDYIGKRGATVGVT++KRIKYA++ILQKEML +VG G+ CET
Sbjct: 305  LLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLLYVGIGEHCET 364

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            KKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YV
Sbjct: 365  KKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYV 424

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 486
            QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS
Sbjct: 425  QKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 484

Query: 487  HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 546
            HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP
Sbjct: 485  HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 544

Query: 547  ILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEV 606
            ILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKTLRRLRRRVDVNTEV
Sbjct: 545  ILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEV 604

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
            GVVRDIRLKELRIYTDYGRCSRPLFIV+ Q+LLIKKRDI ALQQRES E+ GWH LVAKG
Sbjct: 605  GVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKG 664

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
            FIEYIDTEEEETTMISMTI+DLVQARL PEEAY + YTHCEIHPSLILGVCASIIPFPDH
Sbjct: 665  FIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDH 724

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
Sbjct: 725  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 784

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NA VAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +
Sbjct: 785  NANVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGS 844

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRH 906
            TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ+SRYTRRDHSISLRH
Sbjct: 845  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRH 904

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 905  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTI 964

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
Sbjct: 965  EGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1024

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            YQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1025 YQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1084

Query: 1087 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1146
            RDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRG
Sbjct: 1085 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRG 1144

Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            CKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTK
Sbjct: 1145 CKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTK 1179


>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
 gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score = 2314 bits (5997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1100/1188 (92%), Positives = 1149/1188 (96%), Gaps = 6/1188 (0%)

Query: 10   EQHQQEEED----EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            E+ + EE D    +EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA
Sbjct: 37   EEMEDEEADGDAPDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 96

Query: 66   DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
            DIEIRPESQHNPG+Q++FAET++KISFGQIYLSKPMMTE+DGETATLFPK+ARLRNLTYS
Sbjct: 97   DIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYS 156

Query: 126  APLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
            APLYVDV+ RV+KKGHD EEVTET ++ KVFIGKVPIMLRSSYCTL+Q SEKDLTELGEC
Sbjct: 157  APLYVDVSYRVMKKGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGEC 216

Query: 186  PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
            PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRP S+MF
Sbjct: 217  PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMF 276

Query: 246  VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
            VRMLSR  AKGGSSGQYIRATLPYIR +IPIIIVFRALGFVADKDILEHICYDF DTQMM
Sbjct: 277  VRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMM 336

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVT++KRIKYAKEILQKEMLPHVG G+FCE
Sbjct: 337  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCE 396

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            TKKAYYFGYIIHRLL+CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+Y
Sbjct: 397  TKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSY 456

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL 485
            VQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTL
Sbjct: 457  VQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTL 516

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA 
Sbjct: 517  SHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN 576

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PILEFLEEWGTENFEEISPAVIPQA KIFVNGCWVGIHR+P++LVKTLRRLRR++DVNTE
Sbjct: 577  PILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTE 636

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAK 665
            VGVVRDIRLKELR+YTDYGRCSRPLFIVE QRLLIKKR I ALQQRE+PE+ GWHDLVAK
Sbjct: 637  VGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEE-GWHDLVAK 695

Query: 666  GFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPD 725
            GFIEYIDTEEEETTMISMTINDL+ AR +PEEAY++TYTHCEIHPSLILGVCASIIPFPD
Sbjct: 696  GFIEYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPD 755

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG
Sbjct: 756  HNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 815

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
            INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R 
Sbjct: 816  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRE 875

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLR 905
            NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI QD+AQGQA+RYT+RDHS SLR
Sbjct: 876  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLR 935

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
            HSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT
Sbjct: 936  HSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 995

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
            +EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC
Sbjct: 996  IEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1055

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR
Sbjct: 1056 GYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1115

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECR 1145
            SRDGGLRFGEMERDCMIAHGA+ FLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECR
Sbjct: 1116 SRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECR 1175

Query: 1146 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 1193
            GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT +D K  KD KK+
Sbjct: 1176 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT-QDNKTGKDQKKR 1222


>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score = 2313 bits (5993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1096/1175 (93%), Positives = 1143/1175 (97%), Gaps = 2/1175 (0%)

Query: 19   EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78
            +EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG
Sbjct: 46   DEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 105

Query: 79   QQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
            +Q++FAET++KISFGQIYLSKPMMTE+DGETATLFPK+ARLRNLTYSAPLYVDV+ RV+K
Sbjct: 106  RQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMK 165

Query: 139  KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
            KGHD EEVTET ++ KVFIGKVPIMLRSSYCTL+Q SEKDLTELGECPYDQGGYFIINGS
Sbjct: 166  KGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGS 225

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRP S+MFVRMLSR  AKGGS
Sbjct: 226  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGS 285

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
            SGQYIRATLPYIR +IPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVI
Sbjct: 286  SGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVI 345

Query: 319  QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            QNQQVALDYIGKRGATVGVT++KRIKYAKEILQKEMLPHVG G+FCETKKAYYFGYIIHR
Sbjct: 346  QNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHR 405

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LL+CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGK+VNL
Sbjct: 406  LLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNL 465

Query: 439  QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
            QFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE
Sbjct: 466  QFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 525

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEWGTEN
Sbjct: 526  GKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTEN 585

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELR 618
            FEEISPAVIPQA KIFVNGCWVGIHR+P++LVKTLRRLRR++DVNTEVGVVRDIRLKELR
Sbjct: 586  FEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELR 645

Query: 619  IYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEET 678
            +YTDYGRCSRPLFIVE QRLLIKKR I ALQQRE+PE+ GWHDLVAKGFIEYIDTEEEET
Sbjct: 646  LYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEE-GWHDLVAKGFIEYIDTEEEET 704

Query: 679  TMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 738
            TMISMTINDL+ AR +PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM
Sbjct: 705  TMISMTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 764

Query: 739  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 798
            GKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY
Sbjct: 765  GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 824

Query: 799  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 858
            NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R NTMGMRHGSYDKL
Sbjct: 825  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKL 884

Query: 859  DDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLT 918
            DDDGLAPPGTRVSGEDVIIGKT+PI QD+AQGQA+RYT+RDHS SLRHSE+GMVDQVLLT
Sbjct: 885  DDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLT 944

Query: 919  TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 978
            TNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPH
Sbjct: 945  TNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPH 1004

Query: 979  AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1038
            AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG
Sbjct: 1005 AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1064

Query: 1039 HTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1098
            HTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER
Sbjct: 1065 HTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1124

Query: 1099 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 1158
            DCMIAHGA+ FLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQVHI
Sbjct: 1125 DCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHI 1184

Query: 1159 PYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 1193
            PYACKLLFQELMAMAIAPRMLT +D K  KD KK+
Sbjct: 1185 PYACKLLFQELMAMAIAPRMLT-QDNKTGKDQKKR 1218


>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Brachypodium distachyon]
          Length = 1228

 Score = 2300 bits (5960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1090/1171 (93%), Positives = 1137/1171 (97%), Gaps = 2/1171 (0%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG+Q++
Sbjct: 60   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAE 119

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
            FAET++KISFGQIYLSKPMMTE+DGETATLFPK+ARLRNLTYSAPLYVDV+ RV+KKGHD
Sbjct: 120  FAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVVKKGHD 179

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
             EEVTET ++ KVFIGKVPIMLRSSYCTL+Q SEKDLTELGECPYDQGGYF+INGSEKVL
Sbjct: 180  CEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFVINGSEKVL 239

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            IAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRP S+MFVRMLSR  AKGGSSGQY
Sbjct: 240  IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQY 299

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
            IRATLPYIR +IPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQ
Sbjct: 300  IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ 359

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
            VALDYIGKRGATVGVTR+KRIKYAKEILQKEMLPHVG G+FCETKKAYYFGYIIHRLL+C
Sbjct: 360  VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMC 419

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
            ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAI
Sbjct: 420  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 479

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            KAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA
Sbjct: 480  KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 539

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEWGTENFEEI
Sbjct: 540  KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEI 599

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
            SPAVIPQA KIFVNGCWVGIHR+P++LVKTLRRLRR++DVNTEVGVVRDIRLKELR+YTD
Sbjct: 600  SPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTD 659

Query: 623  YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMIS 682
            YGRCSRPLFIV+ QRLLIKK+ I ALQQRE+P D GWHDLVAKGFIEYIDTEEEETTMIS
Sbjct: 660  YGRCSRPLFIVDGQRLLIKKKHIRALQQRETP-DEGWHDLVAKGFIEYIDTEEEETTMIS 718

Query: 683  MTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742
            MTINDLV AR +P+EAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 719  MTINDLVSARNNPQEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 778

Query: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 779  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 838

Query: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862
            SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R NTMGMRHGSYDKLDDDG
Sbjct: 839  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDG 898

Query: 863  LAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
            LAPPGTRVSGEDVIIGKT+PI QD+AQGQA+RY++RDHS SLRHSE+GMVDQVLLTTNAD
Sbjct: 899  LAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNAD 958

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPS
Sbjct: 959  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPS 1018

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 1019 RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1078

Query: 1043 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102
            +LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1079 KLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1138

Query: 1103 AHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1162
            AHGA+ FLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC
Sbjct: 1139 AHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1198

Query: 1163 KLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 1193
            KLLFQELMAMAIAPRMLT  D K  KD KK+
Sbjct: 1199 KLLFQELMAMAIAPRMLT-HDIKSGKDQKKR 1228


>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
 gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
          Length = 1218

 Score = 2247 bits (5823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1071/1176 (91%), Positives = 1120/1176 (95%), Gaps = 17/1176 (1%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            D  +EI Q+DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP
Sbjct: 60   DLRDEIGQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 119

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
            G+Q++FAET++KISFGQIYLSKPMMTE+DGETATLFPK+ARLRNLTYSAPLYVDV+ RV+
Sbjct: 120  GRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVM 179

Query: 138  KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 197
            KKGHD EEVTET D+ KVFIGKVPIMLRSSYCTLYQ SEKDLTELGECPYDQGGYFIING
Sbjct: 180  KKGHDCEEVTETADYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIING 239

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRP S+MFVRMLSR  AKGG
Sbjct: 240  SEKVLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGG 299

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            SSGQYIRATLPYIR +IPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFV
Sbjct: 300  SSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 359

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQNQQVALDYIGKRGATVGVTR+KRIKYAKEILQKEMLPHVG G+FCETKKAYYFGYIIH
Sbjct: 360  IQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIH 419

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLL+CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM               CVDNGK+VN
Sbjct: 420  RLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM---------------CVDNGKEVN 464

Query: 438  LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
            LQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR
Sbjct: 465  LQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 524

Query: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
            EGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEWGTE
Sbjct: 525  EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTE 584

Query: 558  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
            NFEEISPAVIPQA KIFVNGCWVGIHR+P++LVKTLRRLRR++DVNTEVGVVRDIRLKEL
Sbjct: 585  NFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKEL 644

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            R+YTDYGRCSRPLFIVE QRLLIKK  IIALQ RE+P D GWH+LV+KG+IEYIDTEEEE
Sbjct: 645  RLYTDYGRCSRPLFIVEGQRLLIKKAHIIALQHRETP-DEGWHELVSKGYIEYIDTEEEE 703

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            TTMISMTI+DL  AR +PE+AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 704  TTMISMTISDLHNARHNPEDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 763

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG
Sbjct: 764  MGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 823

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R NTMGMRHGSYDK
Sbjct: 824  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDK 883

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLL 917
            LDDDGLAPPGTRVSGEDVIIGKT+PI QD+AQGQASRY++RDHS SLRHSE+GMVDQVLL
Sbjct: 884  LDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLL 943

Query: 918  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
            TTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNP
Sbjct: 944  TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNP 1003

Query: 978  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1037
            HAIPSRMTIGQLIECIMGKVAA MG+EGDATPFTDVTVDNISKALH+C YQMRGFETMYN
Sbjct: 1004 HAIPSRMTIGQLIECIMGKVAAQMGREGDATPFTDVTVDNISKALHRCNYQMRGFETMYN 1063

Query: 1038 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1097
            GHTGR+LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME
Sbjct: 1064 GHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1123

Query: 1098 RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVH 1157
            RDCMIAHGA+ FLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQVH
Sbjct: 1124 RDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVH 1183

Query: 1158 IPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 1193
            IPYACKLLFQELMAMAIAPRMLT  D K  KD KK+
Sbjct: 1184 IPYACKLLFQELMAMAIAPRMLT-HDMKTGKDQKKR 1218


>gi|70794968|gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1207

 Score = 2233 bits (5787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1061/1174 (90%), Positives = 1128/1174 (96%), Gaps = 2/1174 (0%)

Query: 20   EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
            EEEI+QEDAW VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE+ADIEI+PESQHNPG+
Sbjct: 35   EEEISQEDAWTVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDEAADIEIKPESQHNPGR 94

Query: 80   QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
            QSDF E +Y+ISFGQIYLSKPMMTESDGETA+LFPKAARLRNLTYS+PLYVDVTKRV+KK
Sbjct: 95   QSDFVEMVYRISFGQIYLSKPMMTESDGETASLFPKAARLRNLTYSSPLYVDVTKRVVKK 154

Query: 140  GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
            GHD EEVTETQ+FTKVFIGKVPIMLRSSYC+LYQ SEKDLTELGECP+DQGGYFIINGSE
Sbjct: 155  GHDCEEVTETQEFTKVFIGKVPIMLRSSYCSLYQTSEKDLTELGECPFDQGGYFIINGSE 214

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
            KVLIAQEKMSTNHVYVFK RQPNKYAYV+EVRSMAESQNRPPS MFVRM+S +SAKGGSS
Sbjct: 215  KVLIAQEKMSTNHVYVFKIRQPNKYAYVSEVRSMAESQNRPPSGMFVRMVSSSSAKGGSS 274

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQYIRATLPYIRTEIPI++VFRALGFVADKDILEHICY+F D +MM+LLRPSLEEAFVIQ
Sbjct: 275  GQYIRATLPYIRTEIPIVVVFRALGFVADKDILEHICYEFTDNKMMDLLRPSLEEAFVIQ 334

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
            NQQVALDYIGKRG+TVGVT++KRI+YAKEILQ+EMLPHVGTG++CETKKAYYFGYIIHRL
Sbjct: 335  NQQVALDYIGKRGSTVGVTKEKRIRYAKEILQREMLPHVGTGEYCETKKAYYFGYIIHRL 394

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LLCALGRR EDDRDHY NKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQ
Sbjct: 395  LLCALGRRPEDDRDHYANKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQ 454

Query: 440  FAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 499
            FAIKAKTITSGLKYSLATGNWGQAN+AG+RAGVSQVLNRLTYASTLSHLRRLNSPIGREG
Sbjct: 455  FAIKAKTITSGLKYSLATGNWGQANSAGSRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 514

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            KLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENF
Sbjct: 515  KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENF 574

Query: 560  EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 619
            EEISPAVIP ATKIFVNGCWVGIHR+PE+LV+TLR+LRR+VDVNTEVGV+RDIRLKELR+
Sbjct: 575  EEISPAVIPLATKIFVNGCWVGIHRNPELLVRTLRQLRRQVDVNTEVGVIRDIRLKELRL 634

Query: 620  YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 679
            YTD GRCSRPLFIVEKQ+L IKK+DI+ALQQRESPE+ GWHDLVAKG+IEY+DTEEEETT
Sbjct: 635  YTDCGRCSRPLFIVEKQKLQIKKKDILALQQRESPEEVGWHDLVAKGYIEYVDTEEEETT 694

Query: 680  MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
            MISMTINDL  ARL P++AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 695  MISMTINDLTSARLCPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 754

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN
Sbjct: 755  KQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 814

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDSVIMNQSSIDRGFFRS+F+RSYRDEEKKMGTLVKEDFG P+R NTMGMRHGSYDKLD
Sbjct: 815  QEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKMGTLVKEDFGCPNRENTMGMRHGSYDKLD 874

Query: 860  DDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTT 919
            DDG APPGTRV+GEDVIIGKTTPI+ D+AQGQ +RYTRRDHS  LRHSE+GMVDQVLLTT
Sbjct: 875  DDGFAPPGTRVAGEDVIIGKTTPIAPDDAQGQTARYTRRDHSTCLRHSESGMVDQVLLTT 934

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
            NADGLRFVK+R+RS+RIPQIGDKFSSRHGQKGT+GM YTQEDMPWT+EGI PDIIVNPHA
Sbjct: 935  NADGLRFVKMRMRSIRIPQIGDKFSSRHGQKGTIGMAYTQEDMPWTIEGICPDIIVNPHA 994

Query: 980  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
            IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGH
Sbjct: 995  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGH 1054

Query: 1040 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1099
            TGR LT  IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD
Sbjct: 1055 TGRPLTYTIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1114

Query: 1100 CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 1159
            CMIAHGA+HFLKERLFDQSDAYRVHVC  CG++AIANLKKNSFECR CKNKTDIVQV+IP
Sbjct: 1115 CMIAHGAAHFLKERLFDQSDAYRVHVCALCGIVAIANLKKNSFECRHCKNKTDIVQVYIP 1174

Query: 1160 YACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 1193
            YACKLL QELMAMAIAPR+LTK+    S D KK+
Sbjct: 1175 YACKLLLQELMAMAIAPRLLTKD--IDSGDGKKR 1206


>gi|68300804|gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1203

 Score = 2229 bits (5775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1052/1162 (90%), Positives = 1120/1162 (96%)

Query: 21   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 80
            +EITQ+DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE+ADIEIRPESQHNP +Q
Sbjct: 32   QEITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPARQ 91

Query: 81   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
            SDF +TIYKI F QIYLS+PMMTESDGET TLFPKAARLRNLTYS+PLYVDV K VIKKG
Sbjct: 92   SDFVDTIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVRKEVIKKG 151

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
            HD EEV+E Q+FTKVFIGKVPIMLRSSYC+LY  SEKDLTELGECPYDQGGYFI+NGSEK
Sbjct: 152  HDYEEVSECQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEK 211

Query: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
            VLIAQEKMS+NHVYVFKKRQPNKYAYVAEVRS+AE Q + PSTMFVRMLSR++AK GSSG
Sbjct: 212  VLIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSIAEGQTKAPSTMFVRMLSRSNAKVGSSG 271

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
            QYI+ATLPYI+ EIPIIIVFRALGFVADKDIL HICYDF DTQMMELLRPSLEEAFVIQN
Sbjct: 272  QYIKATLPYIKNEIPIIIVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEAFVIQN 331

Query: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            QQVALDYIGKRG+TVG +R++RIKYAKEILQ+EMLPHVGT ++CETKKAYYFGYIIHRLL
Sbjct: 332  QQVALDYIGKRGSTVGFSRERRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHRLL 391

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
            LC LGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVD+GKDVNLQF
Sbjct: 392  LCVLGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDSGKDVNLQF 451

Query: 441  AIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 500
            AIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGK
Sbjct: 452  AIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGK 511

Query: 501  LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
            LAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFE
Sbjct: 512  LAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFE 571

Query: 561  EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIY 620
            EISPAVIPQ+TKIFVNGCWVGIHR+P++LV+TLR+LRR+VDVNTEVGVVR+I LKELR+Y
Sbjct: 572  EISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTLRQLRRQVDVNTEVGVVRNINLKELRLY 631

Query: 621  TDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTM 680
            TDYGRCSRPLFIV+K++L+IKK+DI+ALQ R+S ED GWHDL AKGFIEY+DTEEEETTM
Sbjct: 632  TDYGRCSRPLFIVDKKKLIIKKKDILALQLRDSSEDSGWHDLXAKGFIEYVDTEEEETTM 691

Query: 681  ISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 740
            I+MTINDL  +RL+P EAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 692  IAMTINDLTNSRLNPSEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 751

Query: 741  QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 800
            QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQ
Sbjct: 752  QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQ 811

Query: 801  EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 860
            EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NTMGMRHGSYDKLDD
Sbjct: 812  EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRENTMGMRHGSYDKLDD 871

Query: 861  DGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTN 920
            DG APPGTRVSG+DVIIGKTTPISQD+AQGQ++RYTR+DHS SLRHSETG+VDQVLLTTN
Sbjct: 872  DGFAPPGTRVSGDDVIIGKTTPISQDDAQGQSARYTRKDHSTSLRHSETGIVDQVLLTTN 931

Query: 921  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
            ADGLRFVK+R+RSVRIPQIGDKFSSRHGQKGT+GMTYTQEDMPWT+EGITPDIIVNPHAI
Sbjct: 932  ADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWTMEGITPDIIVNPHAI 991

Query: 981  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1040
            PSRMTIGQL+EC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHT
Sbjct: 992  PSRMTIGQLVECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHT 1051

Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
            GR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC
Sbjct: 1052 GRILTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1111

Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1160
            MIAHGA+HFLKERLFDQSDAYR+HVC+ CGLIAIANLKK SFECR CKNKTDIVQV+IPY
Sbjct: 1112 MIAHGAAHFLKERLFDQSDAYRIHVCQQCGLIAIANLKKISFECRSCKNKTDIVQVYIPY 1171

Query: 1161 ACKLLFQELMAMAIAPRMLTKE 1182
            ACKLL QELM+MAIAPRMLTKE
Sbjct: 1172 ACKLLIQELMSMAIAPRMLTKE 1193


>gi|68300799|gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1203

 Score = 2224 bits (5764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1055/1167 (90%), Positives = 1120/1167 (95%), Gaps = 1/1167 (0%)

Query: 21   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 80
            +EITQ+DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE+A+IEIRPESQHNP +Q
Sbjct: 33   QEITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETANIEIRPESQHNPSRQ 92

Query: 81   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
             DF ETIYKI F QIYLS+PMMTESDGET TLFPKAARLRNLTYS+PLYVDV K VIKKG
Sbjct: 93   PDFVETIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIKKG 152

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
            HD EEVTE Q+FTKVFIGKVPIMLRSSYC+LY  SEKDLTELGECPYDQGGYFI+NGSEK
Sbjct: 153  HDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEK 212

Query: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
            VLIAQEKMS+NHVYVFKKRQPNKYAYVAEVRS+AE QN+ PS+MFVRMLSR++AKG +SG
Sbjct: 213  VLIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSIAEGQNKAPSSMFVRMLSRSNAKG-ASG 271

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
            QYIRATLPYIR EIPII+VFRALGFVADKDIL HICYDF DTQMMELLRPSLEEAFVIQN
Sbjct: 272  QYIRATLPYIRAEIPIIVVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEAFVIQN 331

Query: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            QQVALDYIGKRG+TVG TR++RIKYAKEILQ+EMLPHVGT ++CETKKAYYFGYIIHRLL
Sbjct: 332  QQVALDYIGKRGSTVGFTRERRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHRLL 391

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
            LC LGRR EDDRDHYGBKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVD+GKDVNLQF
Sbjct: 392  LCVLGRRPEDDRDHYGBKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDSGKDVNLQF 451

Query: 441  AIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 500
            AIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGK
Sbjct: 452  AIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGK 511

Query: 501  LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
            LAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFE
Sbjct: 512  LAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFE 571

Query: 561  EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIY 620
            EISPAVIPQ+TKIFVNGCWVGIHR+P++LV+TLR+LRR+VDVNTEVGVVR+I LKELR+Y
Sbjct: 572  EISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTLRQLRRQVDVNTEVGVVRNINLKELRLY 631

Query: 621  TDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTM 680
            TDYGRCSRPLFIVEK++L+IKK+DIIALQ RES ED GWHDLVAKGFIEY+DTEEEETTM
Sbjct: 632  TDYGRCSRPLFIVEKKKLIIKKKDIIALQMRESSEDSGWHDLVAKGFIEYVDTEEEETTM 691

Query: 681  ISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 740
            I+MTINDL  +RL+PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 692  IAMTINDLTNSRLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 751

Query: 741  QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 800
            QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQ
Sbjct: 752  QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQ 811

Query: 801  EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 860
            EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NTMGMRHGSYDKLDD
Sbjct: 812  EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRENTMGMRHGSYDKLDD 871

Query: 861  DGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTN 920
            DG APPGTRVSG+DVIIGKTTPISQD+AQGQ +RYT++DHS SLRHSETG+VDQVLLTTN
Sbjct: 872  DGFAPPGTRVSGDDVIIGKTTPISQDDAQGQPARYTQKDHSTSLRHSETGIVDQVLLTTN 931

Query: 921  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
            ADGLRFVK+R+RSVRIPQIGDKFSSRHGQKGT+GMTYTQEDMPW +EGITPDIIVNPHAI
Sbjct: 932  ADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWNIEGITPDIIVNPHAI 991

Query: 981  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1040
            PSRMTIGQL+ECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRGFE MYNGHT
Sbjct: 992  PSRMTIGQLVECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRGFERMYNGHT 1051

Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
            GR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC
Sbjct: 1052 GRVLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1111

Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1160
            MIAHGA+HFLKERLFDQSDAYRVHVC+ CGLIAIANLKK SFECR C+NKTD VQV+IPY
Sbjct: 1112 MIAHGAAHFLKERLFDQSDAYRVHVCQQCGLIAIANLKKMSFECRSCRNKTDNVQVYIPY 1171

Query: 1161 ACKLLFQELMAMAIAPRMLTKEDTKQS 1187
            ACKLL QELM+MAIAPRMLTKE    S
Sbjct: 1172 ACKLLIQELMSMAIAPRMLTKEPKPSS 1198


>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
 gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
          Length = 1205

 Score = 2220 bits (5753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1044/1161 (89%), Positives = 1109/1161 (95%), Gaps = 1/1161 (0%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            EITQ+DAWAVIS+YFEEKGLVRQQLDSFDEFIQNTMQEIVDE+ADIEIRPESQHNP +Q 
Sbjct: 39   EITQDDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPSRQP 98

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            DF ETIYKI F QIYLS+PMMTESDGET TLFPKAARLRNLTYS+PLYVDV K VIKKGH
Sbjct: 99   DFVETIYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIKKGH 158

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            D EEVTE Q+FTKVFIGKVPIMLRSSYC+LY  SEKDLTELGECPYDQGGYFI+NGSEKV
Sbjct: 159  DYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEKV 218

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 261
            LIAQEKMS+NHVYVFKKRQPNKYAYVAEVRS++E QN+ PS MFVRMLSR+++KG + GQ
Sbjct: 219  LIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSISEGQNKAPSGMFVRMLSRSNSKG-AYGQ 277

Query: 262  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 321
            YIRATLPYIRTEIPII+VFRALGFVADKDIL HICYDF DTQMMELLRPSLEEAFVIQNQ
Sbjct: 278  YIRATLPYIRTEIPIIVVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEAFVIQNQ 337

Query: 322  QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 381
            QVALDYIGKRG+TVG TR+KRIKYAKEILQ+EMLPHVGT ++CETKKAYYFGYIIHRLLL
Sbjct: 338  QVALDYIGKRGSTVGFTREKRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHRLLL 397

Query: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 441
            C LGRR EDDRDHY NKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVD GKDVNLQFA
Sbjct: 398  CVLGRRPEDDRDHYANKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDGGKDVNLQFA 457

Query: 442  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501
            IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKL
Sbjct: 458  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKL 517

Query: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561
            AKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEE
Sbjct: 518  AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEE 577

Query: 562  ISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 621
            ISPAVIPQ+TKIFVNGCWVGIHR+P++LV+TLR+LRR+VDVNTEVGVVR+I LKELR+YT
Sbjct: 578  ISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTLRQLRRQVDVNTEVGVVRNINLKELRLYT 637

Query: 622  DYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMI 681
            DYGRCSRPLFIV+K+RL IKK DIIALQ RES ED GWHDLVAKGFIEY+DTEEEETTMI
Sbjct: 638  DYGRCSRPLFIVDKKRLRIKKNDIIALQMRESSEDSGWHDLVAKGFIEYVDTEEEETTMI 697

Query: 682  SMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741
            +MTINDL  +R++P+EAYA+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 698  AMTINDLTNSRVNPDEAYAETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 757

Query: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801
            AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI CYSGYNQE
Sbjct: 758  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAITCYSGYNQE 817

Query: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 861
            DSVIMNQSSIDRG FRSLFFRSYRDEEKKMGTLVKEDFGRPDR +TMGMRHG+YDKL+DD
Sbjct: 818  DSVIMNQSSIDRGLFRSLFFRSYRDEEKKMGTLVKEDFGRPDREHTMGMRHGNYDKLEDD 877

Query: 862  GLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
            G APPGTRVSG+DVIIGKTTPISQDEAQGQ++RYTR+DHS SLRHSETG+VDQVLLTTNA
Sbjct: 878  GFAPPGTRVSGDDVIIGKTTPISQDEAQGQSARYTRKDHSTSLRHSETGIVDQVLLTTNA 937

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            DGLRFVK+R+RSVRIPQIGDKFSSRHGQKGT+GMTYTQEDMPW+ EGITPDIIVNPHAIP
Sbjct: 938  DGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWSAEGITPDIIVNPHAIP 997

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMTIGQL+ECIMGKVAAH+GKEGDATPFTDVTVD+IS+ LH CGYQMRGFE MYNGHTG
Sbjct: 998  SRMTIGQLVECIMGKVAAHIGKEGDATPFTDVTVDSISRTLHNCGYQMRGFERMYNGHTG 1057

Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
            R L AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM
Sbjct: 1058 RVLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1117

Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
            IAHGA+HFLKERLFDQSDAYRVHVC+ CGL+AIANLKK SFECR C+NKTD VQV+IPYA
Sbjct: 1118 IAHGAAHFLKERLFDQSDAYRVHVCQQCGLMAIANLKKMSFECRSCRNKTDNVQVYIPYA 1177

Query: 1162 CKLLFQELMAMAIAPRMLTKE 1182
            CKLL QELM+MAIAPRMLTKE
Sbjct: 1178 CKLLIQELMSMAIAPRMLTKE 1198


>gi|302781178|ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
 gi|300159830|gb|EFJ26449.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
          Length = 1178

 Score = 2210 bits (5727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1046/1178 (88%), Positives = 1111/1178 (94%), Gaps = 4/1178 (0%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES++IEI+PESQHNP
Sbjct: 2    DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSEIEIKPESQHNP 61

Query: 78   GQQSDFA-ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
            G+ ++++ ET +KI FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY D+ K V
Sbjct: 62   GRNNEYSGETTFKIKFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYADIIKYV 121

Query: 137  IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 196
             +KG DGEE TE ++  KVFIGKVPIMLRSSYCTLYQNS+KDLTELGECPYDQGGYFIIN
Sbjct: 122  TRKGEDGEEDTEQEELPKVFIGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFIIN 181

Query: 197  GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKG 256
            GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP S+MFVRMLSR  AK 
Sbjct: 182  GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGAKA 241

Query: 257  GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
            GSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDF DT MMELLRPSLEEAF
Sbjct: 242  GSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEAF 301

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            VIQNQQVALDYIGKRG+TVGVTR+KRIKYAK+ILQKEMLPHVG G++CETKKAY+FGYII
Sbjct: 302  VIQNQQVALDYIGKRGSTVGVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFGYII 361

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT+DVRAY+QKCVDNGK+V
Sbjct: 362  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCVDNGKEV 421

Query: 437  NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            NL +A+KAKTITSGLKYSLATGNWGQAN+   RAGVSQVLNRLTYASTLSHLRRLNSPIG
Sbjct: 422  NLAYAVKAKTITSGLKYSLATGNWGQANSGNARAGVSQVLNRLTYASTLSHLRRLNSPIG 481

Query: 497  REGKL-AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            REG+L AKPRQLHNS WGMMCPAETPEGQACGLVKNLALM YITVGSAA PIL FLEEW 
Sbjct: 482  REGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILVFLEEWS 541

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
            TENFEEISPAVIP ATKIFVNG WVGIHR+PE LVKTLR+LRR+VDVNTEVGVVRDIRLK
Sbjct: 542  TENFEEISPAVIPNATKIFVNGAWVGIHREPEHLVKTLRQLRRQVDVNTEVGVVRDIRLK 601

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            ELR+YTDYGRCSRPLFIVEKQRLLIKK DI ALQQ+E+ E+G WH+LV+KGFIEY+DTEE
Sbjct: 602  ELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKEAGENG-WHELVSKGFIEYVDTEE 660

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EETTMISMTI+DLV ARL+PEEAY+DTYTHCEIHPS+ILGVC SIIPFPDHNQSPRNTYQ
Sbjct: 661  EETTMISMTISDLVNARLNPEEAYSDTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQ 720

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY
Sbjct: 721  SAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 780

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSSIDRGFFRS+F+RSYRDEEKK GTLVKE+F RP+R  T GMRHGSY
Sbjct: 781  SGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKAGTLVKEEFERPNRETTTGMRHGSY 840

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            DKLDDDG+APPGTRVSGEDVIIGKTTP++QDE   QA RY++RD S  LRHSE+GM+DQV
Sbjct: 841  DKLDDDGIAPPGTRVSGEDVIIGKTTPLAQDETGTQAQRYSKRDQSTCLRHSESGMIDQV 900

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            LLTTNADGLRFVK RVRS+RIPQIGDKFSSRHGQKGT+GMTYTQEDMP+T EGITPDIIV
Sbjct: 901  LLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITPDIIV 960

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035
            NPHAIPSRMTIGQLIECIMGKVAA MGKEGDATPFTDVTVDNISKALHKC YQ+RGFETM
Sbjct: 961  NPHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTDVTVDNISKALHKCNYQLRGFETM 1020

Query: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1095
            YNGHTGRRL+AMIF+GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1021 YNGHTGRRLSAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1080

Query: 1096 MERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQ 1155
            MERDCMIAHGA+HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKN+FECR CKNKT+IVQ
Sbjct: 1081 MERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNTFECRSCKNKTEIVQ 1140

Query: 1156 VHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 1193
            VHIPYACKLLFQELMAMAIAPRM  KE  K+ K H KK
Sbjct: 1141 VHIPYACKLLFQELMAMAIAPRMFMKE-VKKLKGHVKK 1177


>gi|302780123|ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
 gi|300160135|gb|EFJ26753.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
          Length = 1178

 Score = 2210 bits (5726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1046/1178 (88%), Positives = 1110/1178 (94%), Gaps = 4/1178 (0%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES++IEI+PESQHNP
Sbjct: 2    DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSEIEIKPESQHNP 61

Query: 78   GQQSDFA-ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
            G+ ++++ ET +KI FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY D+ K V
Sbjct: 62   GRNNEYSGETTFKIKFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYADIIKYV 121

Query: 137  IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 196
             +KG DGEE TE ++  KVFIGKVPIMLRSSYCTLYQNS+KDLTELGECPYDQGGYFIIN
Sbjct: 122  TRKGEDGEEDTEQEELPKVFIGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFIIN 181

Query: 197  GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKG 256
            GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP S+MFVRMLSR  AK 
Sbjct: 182  GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGAKA 241

Query: 257  GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
            GSSGQYIRATLPYI+ EIPII+VFRALGFVADKDILEHICYDF DT MMELLRPSLEEAF
Sbjct: 242  GSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEAF 301

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            VIQNQQVALDYIGKRG+TVGVTR+KRIKYAK+ILQKEMLPHVG G++CETKKAY+FGYII
Sbjct: 302  VIQNQQVALDYIGKRGSTVGVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFGYII 361

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG LFR LFRKLT+DVRAY+QKCVDNGK+V
Sbjct: 362  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCVDNGKEV 421

Query: 437  NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            NL +A+KAKTITSGLKYSLATGNWGQAN+   RAGVSQVLNRLTYASTLSHLRRLNSPIG
Sbjct: 422  NLAYAVKAKTITSGLKYSLATGNWGQANSGNARAGVSQVLNRLTYASTLSHLRRLNSPIG 481

Query: 497  REGKL-AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            REG+L AKPRQLHNS WGMMCPAETPEGQACGLVKNLALM YITVGSAA PIL FLEEW 
Sbjct: 482  REGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILVFLEEWS 541

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
            TENFEEISPAVIP ATKIFVNG WVGIHR+PE LVKTLR+LRR+VDVNTEVGVVRDIRLK
Sbjct: 542  TENFEEISPAVIPNATKIFVNGAWVGIHREPEHLVKTLRQLRRQVDVNTEVGVVRDIRLK 601

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            ELR+YTDYGRCSRPLFIVEKQRLLIKK DI ALQQ+E+ E+G WH+LV+KGFIEY+DTEE
Sbjct: 602  ELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKEAGENG-WHELVSKGFIEYVDTEE 660

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EETTMISMTI+DLV ARL+PEEAY+DTYTHCEIHPS+ILGVC SIIPFPDHNQSPRNTYQ
Sbjct: 661  EETTMISMTISDLVNARLNPEEAYSDTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQ 720

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY
Sbjct: 721  SAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 780

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSSIDRGFFRS+F+RSYRDEEKK GTLVKE+F RP+R  T GMRHGSY
Sbjct: 781  SGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKAGTLVKEEFERPNRETTTGMRHGSY 840

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            DKLDDDG+APPGTRVSGEDVIIGKTTP+ QDE   QA RY++RD S  LRHSE+GM+DQV
Sbjct: 841  DKLDDDGIAPPGTRVSGEDVIIGKTTPLVQDETGTQAQRYSKRDQSTCLRHSESGMIDQV 900

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            LLTTNADGLRFVK RVRS+RIPQIGDKFSSRHGQKGT+GMTYTQEDMP+T EGITPDIIV
Sbjct: 901  LLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITPDIIV 960

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035
            NPHAIPSRMTIGQLIECIMGKVAA MGKEGDATPFTDVTVDNISKALHKC YQ+RGFETM
Sbjct: 961  NPHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTDVTVDNISKALHKCNYQLRGFETM 1020

Query: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1095
            YNGHTGRRL+AMIF+GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE
Sbjct: 1021 YNGHTGRRLSAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1080

Query: 1096 MERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQ 1155
            MERDCMIAHGA+HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKN+FECR CKNKT+IVQ
Sbjct: 1081 MERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNTFECRSCKNKTEIVQ 1140

Query: 1156 VHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKK 1193
            VHIPYACKLLFQELMAMAIAPRM  KE  K+ K H KK
Sbjct: 1141 VHIPYACKLLFQELMAMAIAPRMFMKE-VKKLKGHVKK 1177


>gi|168027816|ref|XP_001766425.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682334|gb|EDQ68753.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1185

 Score = 2199 bits (5697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1045/1173 (89%), Positives = 1108/1173 (94%), Gaps = 3/1173 (0%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES+DIEIRPESQHNPG+Q++
Sbjct: 15   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSDIEIRPESQHNPGRQAE 74

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
              +  YKI+FGQIYLSKPMMTE+DGETATL+PKAARLRNLTYSAPLYVDVTK V +K  D
Sbjct: 75   IGDVTYKINFGQIYLSKPMMTEADGETATLWPKAARLRNLTYSAPLYVDVTKFVTRKTED 134

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
            GEE TE +D +KV+IGKVPIMLRS YCTL++NS+KDLTELGECPYDQGGYFIINGSEKVL
Sbjct: 135  GEEETEQEDLSKVYIGKVPIMLRSRYCTLFENSDKDLTELGECPYDQGGYFIINGSEKVL 194

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            IAQEKMSTNHVYVFKKRQPNKY YVAEVRSMAE+QNRPPS MFVRMLSR  AKGGSSGQY
Sbjct: 195  IAQEKMSTNHVYVFKKRQPNKYCYVAEVRSMAENQNRPPSGMFVRMLSRAGAKGGSSGQY 254

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
            IRATLPYIRTEIPII+VFRALGFVADKDILEHICYDF DT MMELLRPSLEEAFVIQNQQ
Sbjct: 255  IRATLPYIRTEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEAFVIQNQQ 314

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
            VALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVG G+FCETKKAY+FGYIIHRLLLC
Sbjct: 315  VALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLC 374

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
            A+G  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT+DVR Y+QKCVDNGK++NL +A+
Sbjct: 375  AIGG-AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINLAYAV 433

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            KAKTITSGLKYSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA
Sbjct: 434  KAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 493

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALM YITVGSAA PILEFLEEW TENFEEI
Sbjct: 494  KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILEFLEEWSTENFEEI 553

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
            SPAVIP +TKIFVNG WVGIHR+PE+LV+TLR+LRR+VDVNTEVGVVRDIRLKELR+YTD
Sbjct: 554  SPAVIPNSTKIFVNGLWVGIHRNPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTD 613

Query: 623  YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMIS 682
            YGRCSRPLFIVEKQRLLIKK+D+ ALQ +ES E+  W+DLV+KGFIEY+DTEEEETTMIS
Sbjct: 614  YGRCSRPLFIVEKQRLLIKKQDVRALQMKESSENS-WYDLVSKGFIEYVDTEEEETTMIS 672

Query: 683  MTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742
            MTI DLV AR +PEEAY+DTYTHCEIHPS+ILGVC SIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 673  MTIADLVNARNNPEEAYSDTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQA 732

Query: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 733  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 792

Query: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862
            SVIMNQSSIDRGFFRS+F+RSYRDEEKK GTL+KE+F RP+R NT GMRHGSYDKLDDDG
Sbjct: 793  SVIMNQSSIDRGFFRSIFYRSYRDEEKKQGTLIKEEFERPNRENTTGMRHGSYDKLDDDG 852

Query: 863  LAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
            LAPPGTRVSGEDVIIGKTTP+ QD+   QA RYT+RD S  LRHSE+GM+DQVLLTTNAD
Sbjct: 853  LAPPGTRVSGEDVIIGKTTPLPQDDNASQAQRYTKRDQSTCLRHSESGMIDQVLLTTNAD 912

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            GLRFVK+RVRS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPS
Sbjct: 913  GLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPS 972

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR
Sbjct: 973  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFEVMYNGHTGR 1032

Query: 1043 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102
            RLTA IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
Sbjct: 1033 RLTAHIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1092

Query: 1103 AHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1162
            AHGA+HFLKERLFDQSDAYRVHVCEHCG+IAIANLKKN++ECRGCKN TDIVQVHIPYAC
Sbjct: 1093 AHGAAHFLKERLFDQSDAYRVHVCEHCGIIAIANLKKNTYECRGCKNNTDIVQVHIPYAC 1152

Query: 1163 KLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
            KLLFQELM+MAIAPRM TKE  K   +H KK A
Sbjct: 1153 KLLFQELMSMAIAPRMFTKE-LKMRSEHAKKAA 1184


>gi|68300802|gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1198

 Score = 2185 bits (5663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1032/1174 (87%), Positives = 1109/1174 (94%), Gaps = 5/1174 (0%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            I+QEDAW VIS+YFEEKGLVRQQLDSFDEFIQNTMQEIVDES++IEIRPESQHNPG  SD
Sbjct: 29   ISQEDAWTVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSNIEIRPESQHNPGGNSD 88

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
            FAE +Y+ISFGQIYLSKPMMTESDGET TLFPKAARLRNLTYS+PLYVDVTKRV+KKG D
Sbjct: 89   FAEAMYRISFGQIYLSKPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVTKRVVKKGFD 148

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
             EEVTETQ+F KVFIGKVPIMLRSSYC+LY   EKDL +LGECPYDQGGYFI+NGSEKVL
Sbjct: 149  CEEVTETQEFAKVFIGKVPIMLRSSYCSLYHLPEKDLMDLGECPYDQGGYFIVNGSEKVL 208

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            IAQEKMSTNHVYVFKKRQPNKY+YVAEVRS+AESQN+ PS MFVRMLSR+ AK G+SGQY
Sbjct: 209  IAQEKMSTNHVYVFKKRQPNKYSYVAEVRSIAESQNKAPSGMFVRMLSRSGAKRGTSGQY 268

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
            I ATLPYIRTE+PIII+FRALGFVADKDILEHICYDF D++MMELLRP LEEAFVIQNQQ
Sbjct: 269  IYATLPYIRTEVPIIIIFRALGFVADKDILEHICYDFNDSKMMELLRPFLEEAFVIQNQQ 328

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
            VALDYIGKRG+T+GVTRDKRIKYA+EILQ+EMLPHVGT ++CETKKAYYFGYII+RLLLC
Sbjct: 329  VALDYIGKRGSTIGVTRDKRIKYAREILQREMLPHVGTEEYCETKKAYYFGYIINRLLLC 388

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
            ALGRR EDDRDHY NKRLDLAGPLL GLFRMLFRKLTRDVR+YVQKCVDNGKDVNLQFAI
Sbjct: 389  ALGRRPEDDRDHYANKRLDLAGPLLAGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 448

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            KAKTITSGLKYS+ATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA
Sbjct: 449  KAKTITSGLKYSIATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 508

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFL+EW TENFEEI
Sbjct: 509  KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLDEWSTENFEEI 568

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
            SPAVIPQATKIFVNG W+GIHR+PE+LV+TLR+LRR+VDVNTEVG++RDI LKELR+YTD
Sbjct: 569  SPAVIPQATKIFVNGNWIGIHRNPELLVRTLRQLRRQVDVNTEVGIIRDIHLKELRLYTD 628

Query: 623  YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTM-I 681
            YGRCSRPLFIV+KQRL+IKK+DI+ALQQRES ++ GWHDLV  G +EY+DTEEEETT  I
Sbjct: 629  YGRCSRPLFIVDKQRLVIKKKDILALQQRESADEYGWHDLVRNGSVEYVDTEEEETT-MI 687

Query: 682  SMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741
            SMTINDL+ +R +P+ AY++TYTHCEIHPSL+LGVCASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 688  SMTINDLINSRHNPDAAYSETYTHCEIHPSLVLGVCASIIPFPDHNQSPRNTYQSAMGKQ 747

Query: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801
            AMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE
Sbjct: 748  AMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 807

Query: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 861
            DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG P+R NTMGMRHGSYDKL+DD
Sbjct: 808  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGCPNRDNTMGMRHGSYDKLEDD 867

Query: 862  GLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
            G APPGTRVSG+DVIIGKTTP + DE   Q  R+TR+DHS SLRHSE+G+VDQVLLTTNA
Sbjct: 868  GFAPPGTRVSGDDVIIGKTTPFTPDE--NQNIRFTRQDHSSSLRHSESGVVDQVLLTTNA 925

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGT+GMTYTQ+DMPW++EGITPDIIVNPHAIP
Sbjct: 926  DGLRFVKVRIRSVRIPQIGDKFSSRHGQKGTIGMTYTQDDMPWSIEGITPDIIVNPHAIP 985

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG
Sbjct: 986  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1045

Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
            R LT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM
Sbjct: 1046 RPLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1105

Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
            IAHGA+HFLKERLFDQSDAYRVHVCE CGL+ IANLKK+S+ECR CKNKTDIVQ++IPYA
Sbjct: 1106 IAHGAAHFLKERLFDQSDAYRVHVCERCGLMGIANLKKHSYECRSCKNKTDIVQIYIPYA 1165

Query: 1162 CKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
            CKLL QELM+MAIAPR+LT  D K  K   K G 
Sbjct: 1166 CKLLIQELMSMAIAPRLLTN-DVKSVKGQSKTGG 1198


>gi|68300810|gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1087

 Score = 2181 bits (5652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1054/1088 (96%), Positives = 1075/1088 (98%), Gaps = 1/1088 (0%)

Query: 101  MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKV 160
            MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKV
Sbjct: 1    MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKV 60

Query: 161  PIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 220
            PIMLRSSYCTLYQNSEKDLTELGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ
Sbjct: 61   PIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 120

Query: 221  PNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 280
            PNKYA+VAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF
Sbjct: 121  PNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 180

Query: 281  RALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRD 340
            RALGFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR+
Sbjct: 181  RALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRE 240

Query: 341  KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRL 400
            KRIKYAKEILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRL
Sbjct: 241  KRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRL 300

Query: 401  DLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNW 460
            DLAGPLLGG FRMLFRKLTRDVRAYVQK VDNGKDVNLQFAIKAKTITSGLKYSLATGNW
Sbjct: 301  DLAGPLLGGXFRMLFRKLTRDVRAYVQKXVDNGKDVNLQFAIKAKTITSGLKYSLATGNW 360

Query: 461  GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 520
            GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET
Sbjct: 361  GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 420

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WV
Sbjct: 421  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWV 480

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 640
            GIHRDP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI
Sbjct: 481  GIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 540

Query: 641  KKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYA 700
            KK+DI  LQQRESPE+GGWHDLVAKG+IEYIDTEEEETTMISMTINDL QARL+PEEAY+
Sbjct: 541  KKKDIQTLQQRESPEEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLXQARLNPEEAYS 600

Query: 701  DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYV 760
            DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYV
Sbjct: 601  DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYV 660

Query: 761  LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF 820
            LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGY+QEDSVIMNQSSIDRGFFRSLF
Sbjct: 661  LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYSQEDSVIMNQSSIDRGFFRSLF 720

Query: 821  FRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 880
            FRSYRDEEKKMGTLVKEDFGRPDR++TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT
Sbjct: 721  FRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 780

Query: 881  TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 940
            TPISQD+AQGQASRYTR+DHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG
Sbjct: 781  TPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 840

Query: 941  DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 1000
            DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH
Sbjct: 841  DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 900

Query: 1001 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKH
Sbjct: 901  MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKH 960

Query: 1061 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDA 1120
            MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDA
Sbjct: 961  MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDA 1020

Query: 1121 YRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            YRVHVCE CGLIAIANLKK+SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT
Sbjct: 1021 YRVHVCERCGLIAIANLKKSSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1080

Query: 1181 KEDTKQSK 1188
            K D KQ+K
Sbjct: 1081 K-DVKQAK 1087


>gi|68131916|gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
          Length = 951

 Score = 1923 bits (4981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 911/951 (95%), Positives = 938/951 (98%)

Query: 108  ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
            ETATLFPKAARLRNLTYSAPLYVDVTKR+IKKGHD EEVTETQ+FTKVFIGKVPIMLRSS
Sbjct: 1    ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDLEEVTETQEFTKVFIGKVPIMLRSS 60

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
            YCT+YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61   YCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AEVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121  AEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
            DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAK
Sbjct: 181  DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240

Query: 348  EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
            EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241  EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
            GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
            TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420

Query: 528  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
            LVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR+P+
Sbjct: 421  LVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPD 480

Query: 588  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
            +LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKKRDI A
Sbjct: 481  LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRA 540

Query: 648  LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
            LQ RESPEDGGWHDLV+KGFIEY+DTEEEETTMISMTINDL+ ARL+PEEAY++TYTHCE
Sbjct: 541  LQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLISARLNPEEAYSETYTHCE 600

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKP
Sbjct: 601  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 660

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 661  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 720

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+
Sbjct: 721  EKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDD 780

Query: 888  AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
            +QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRH
Sbjct: 781  SQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 840

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA
Sbjct: 841  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 900

Query: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 901  TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 951


>gi|68131914|gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
          Length = 951

 Score = 1917 bits (4966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 905/951 (95%), Positives = 936/951 (98%)

Query: 108  ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
            ETATLFPKAARLRNLTYSAPLYVDVTKR+IKKGHD EEVTETQ+FTKVFIGKVPIMLRSS
Sbjct: 1    ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSS 60

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
            YCT+YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61   YCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AEVRSMAESQNRPPS MFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121  AEVRSMAESQNRPPSGMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
            DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAK
Sbjct: 181  DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240

Query: 348  EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
            EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241  EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
            GGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301  GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
            TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420

Query: 528  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
            LVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P+
Sbjct: 421  LVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPD 480

Query: 588  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
            +LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI A
Sbjct: 481  LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRA 540

Query: 648  LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
            LQQRESPE+GGWHDLVAKG+IEY+DTEEEETTMISMTINDL+ A+L+PEEAY+DTYTHCE
Sbjct: 541  LQQRESPEEGGWHDLVAKGYIEYVDTEEEETTMISMTINDLITAKLNPEEAYSDTYTHCE 600

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPSLILGVCASIIPFPDHNQ+PRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKP
Sbjct: 601  IHPSLILGVCASIIPFPDHNQTPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 660

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 661  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 720

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDE
Sbjct: 721  EKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDE 780

Query: 888  AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
            +QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RS+RIPQIGDKFSSRH
Sbjct: 781  SQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSIRIPQIGDKFSSRH 840

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA
Sbjct: 841  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 900

Query: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRL
Sbjct: 901  TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRL 951


>gi|70794970|gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe sp. Yoshikawa s.n.]
          Length = 951

 Score = 1916 bits (4964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 916/951 (96%), Positives = 940/951 (98%)

Query: 108  ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
            ETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS
Sbjct: 1    ETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 60

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
            YCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61   YCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AEVRSMAESQNRPPSTMFVRML+RTSAKGGSSGQYIRATLPYIR +IPIIIVFRALGFVA
Sbjct: 121  AEVRSMAESQNRPPSTMFVRMLARTSAKGGSSGQYIRATLPYIRVDIPIIIVFRALGFVA 180

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
            DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYA+
Sbjct: 181  DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAR 240

Query: 348  EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
            EILQKEMLPHVG  ++CETKKAYYFGYIIHRLLL ALGRRAEDDRDHYGNKRLDLAGPLL
Sbjct: 241  EILQKEMLPHVGMAEYCETKKAYYFGYIIHRLLLVALGRRAEDDRDHYGNKRLDLAGPLL 300

Query: 408  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
            GGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301  GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
            TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG
Sbjct: 361  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 420

Query: 528  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
            LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP+ATKIFVNGCWVGIHRDP+
Sbjct: 421  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPEATKIFVNGCWVGIHRDPD 480

Query: 588  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
            MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI A
Sbjct: 481  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQA 540

Query: 648  LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
            LQQRE+PEDGGWHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEAY++ YTHCE
Sbjct: 541  LQQRETPEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSEYYTHCE 600

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP
Sbjct: 601  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 660

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 661  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 720

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EKKMGTLVKEDFGRP+R++TM MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+QDE
Sbjct: 721  EKKMGTLVKEDFGRPNRNDTMNMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDE 780

Query: 888  AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
            +QGQASRYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH
Sbjct: 781  SQGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 840

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA
Sbjct: 841  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 900

Query: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 901  TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 951


>gi|68131844|gb|AAY85200.1| RNA polymerase II second largest subunit [Coriaria sarmentosa]
          Length = 952

 Score = 1916 bits (4963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 922/952 (96%), Positives = 939/952 (98%), Gaps = 1/952 (0%)

Query: 108  ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
            ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS
Sbjct: 1    ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 60

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
            YCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+V
Sbjct: 61   YCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFV 120

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AEVRSMAESQNRPPSTMFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121  AEVRSMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
            DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR+KRIKYAK
Sbjct: 181  DKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAK 240

Query: 348  EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
            EILQKEMLPHVG G+FCETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241  EILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
            GGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301  GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
            TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG
Sbjct: 361  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 420

Query: 528  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
            LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR+P+
Sbjct: 421  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHREPD 480

Query: 588  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
            MLVKTLRRLRRRVDVNTEVGVVRDIRL+ELRIYTDYGRCSRPLFIVEKQRLLI+K+DI A
Sbjct: 481  MLVKTLRRLRRRVDVNTEVGVVRDIRLRELRIYTDYGRCSRPLFIVEKQRLLIRKKDIHA 540

Query: 648  LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
            LQQRESPEDGGWHDLV+KGFIEYIDTEEEETTMISMTI DLVQAR  PEEAY+D YTHCE
Sbjct: 541  LQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTIRDLVQARNSPEEAYSDNYTHCE 600

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP
Sbjct: 601  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 660

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            LVTTRAMEHLHFRQLPAGI AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 661  LVTTRAMEHLHFRQLPAGIYAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 720

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDE
Sbjct: 721  EKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDE 780

Query: 888  AQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 946
            AQGQ A+RYTR DHSISLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR
Sbjct: 781  AQGQAAARYTRSDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 840

Query: 947  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
            HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD
Sbjct: 841  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 900

Query: 1007 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 901  ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRQLSAMIFLGPTYYQRL 952


>gi|68131834|gb|AAY85195.1| RNA polymerase II second largest subunit [Callistemon subulatus]
          Length = 952

 Score = 1912 bits (4953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 921/952 (96%), Positives = 938/952 (98%), Gaps = 1/952 (0%)

Query: 108  ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
            ETATLFPKAARLRNLTYSAPLYVDV+ RVIKKGHDGEE+TE QD  KVFIGKVPIMLRSS
Sbjct: 1    ETATLFPKAARLRNLTYSAPLYVDVSMRVIKKGHDGEELTEPQDLQKVFIGKVPIMLRSS 60

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
            YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61   YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
            DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR+KRIKYAK
Sbjct: 181  DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAK 240

Query: 348  EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
            EILQKEMLPHVG  ++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL
Sbjct: 241  EILQKEMLPHVGVEEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 300

Query: 408  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
            GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
            TRAGVSQVLNRLTYASTL HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG
Sbjct: 361  TRAGVSQVLNRLTYASTLPHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 420

Query: 528  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
            LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP VIPQATKIFVNGCWVGIHRDP+
Sbjct: 421  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPVVIPQATKIFVNGCWVGIHRDPD 480

Query: 588  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
            MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI A
Sbjct: 481  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHA 540

Query: 648  LQQRE-SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 706
            LQ RE  P+D GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL+PEEAY++TYTHC
Sbjct: 541  LQLREGGPDDVGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSETYTHC 600

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK
Sbjct: 601  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 660

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
            PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD
Sbjct: 661  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 720

Query: 827  EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 886
            EEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD
Sbjct: 721  EEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQD 780

Query: 887  EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 946
            +AQGQASRY+RRDHSISLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR
Sbjct: 781  DAQGQASRYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 840

Query: 947  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
            HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD
Sbjct: 841  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 900

Query: 1007 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            ATPFTDVTVDNISKALH+CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 901  ATPFTDVTVDNISKALHRCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 952


>gi|70794972|gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
          Length = 951

 Score = 1909 bits (4944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 900/951 (94%), Positives = 935/951 (98%)

Query: 108  ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
            E+ATLFPKAARLRNLTYSAPLYVDVTKR+IKKGHD EEV ETQDFTKVFIG+VPIMLRSS
Sbjct: 1    ESATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVAETQDFTKVFIGRVPIMLRSS 60

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
            YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61   YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AEVRSMAESQNRPPS+MFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121  AEVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
            DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYA+
Sbjct: 181  DKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAR 240

Query: 348  EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
            EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241  EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
            GGLFRMLFRKLTRDVR YVQKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301  GGLFRMLFRKLTRDVRGYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
            TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420

Query: 528  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
            LVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR+PE
Sbjct: 421  LVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPE 480

Query: 588  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
            +LVKTLR+LRR+VDVNTEVGV+RDI LKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI A
Sbjct: 481  LLVKTLRQLRRQVDVNTEVGVIRDIHLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQA 540

Query: 648  LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
            LQ RESPE+GGWHDLVAKGFIEY+DTEEEETTMISMTINDLV AR++P+EAY++TYTHCE
Sbjct: 541  LQLRESPEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARVNPKEAYSETYTHCE 600

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKP
Sbjct: 601  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 660

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 661  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 720

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EKKMGTL+KEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD+
Sbjct: 721  EKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDD 780

Query: 888  AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
            +QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRH
Sbjct: 781  SQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 840

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA
Sbjct: 841  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 900

Query: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRL
Sbjct: 901  TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRL 951


>gi|68131842|gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus tuberosa]
          Length = 951

 Score = 1895 bits (4909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 898/951 (94%), Positives = 929/951 (97%)

Query: 108  ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
            ETATLFPKAARLRNLTYSAPLYV+VTKR+I+KGHD EEVTETQ+FTKVFIGKVPIMLRSS
Sbjct: 1    ETATLFPKAARLRNLTYSAPLYVNVTKRIIRKGHDLEEVTETQEFTKVFIGKVPIMLRSS 60

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
            YCT+Y NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMS NHVYVFKKRQPNKYAYV
Sbjct: 61   YCTVYHNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSDNHVYVFKKRQPNKYAYV 120

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AEVRSMAESQNRPPS+MFV+MLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121  AEVRSMAESQNRPPSSMFVQMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
            DKDILEH CYDF  TQMMEL  PSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAK
Sbjct: 181  DKDILEHTCYDFSGTQMMELPHPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240

Query: 348  EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
            EI QKEMLPHVG G++CETKKAYYFGYIIH+LLLCA GRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241  EIFQKEMLPHVGVGEYCETKKAYYFGYIIHQLLLCAFGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
            GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
            TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420

Query: 528  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
            LVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR+P+
Sbjct: 421  LVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPD 480

Query: 588  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
            +LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI A
Sbjct: 481  LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRA 540

Query: 648  LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
            LQ RESPEDGGWHDLV+KGFIEY+DTEEEETTMISMTINDLV ARL+PEEAY++TYTHCE
Sbjct: 541  LQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCE 600

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKP
Sbjct: 601  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 660

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 661  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 720

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+
Sbjct: 721  EKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDD 780

Query: 888  AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
            +QGQ SRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRH
Sbjct: 781  SQGQPSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 840

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA
Sbjct: 841  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 900

Query: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 901  TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 951


>gi|70794974|gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
          Length = 942

 Score = 1888 bits (4890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 896/943 (95%), Positives = 924/943 (97%), Gaps = 1/943 (0%)

Query: 116  AARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 175
            AARLRNLTYSAPLYVDVTKRVIKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS
Sbjct: 1    AARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 60

Query: 176  EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE 235
            EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE
Sbjct: 61   EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE 120

Query: 236  SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 295
            SQNRPPS+MFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI
Sbjct: 121  SQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 180

Query: 296  CYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEML 355
            CYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG TVGVT++KRIKYAKEILQKEML
Sbjct: 181  CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGQTVGVTKEKRIKYAKEILQKEML 240

Query: 356  PHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 415
            PHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLF
Sbjct: 241  PHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLF 300

Query: 416  RKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 475
            RKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
Sbjct: 301  RKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 360

Query: 476  LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 535
            LNRLT+ASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALM
Sbjct: 361  LNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALM 420

Query: 536  VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 595
            VYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTLR+
Sbjct: 421  VYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQ 480

Query: 596  LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPE 655
            LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+ I +LQQRE+ +
Sbjct: 481  LRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKHIRSLQQRET-Q 539

Query: 656  DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILG 715
            D GWHDLVAKGFIEY+DTEEEETTMISMTI+DLV ARL+P+EAY++TYTHCEIHPSLILG
Sbjct: 540  DEGWHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPDEAYSETYTHCEIHPSLILG 599

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAME
Sbjct: 600  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAME 659

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
            HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL+
Sbjct: 660  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLI 719

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRY 895
            KEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDE+QGQASRY
Sbjct: 720  KEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQASRY 779

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
            TRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGM
Sbjct: 780  TRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGM 839

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1015
            TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA HMGKEGDATPFTDVTV
Sbjct: 840  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAVHMGKEGDATPFTDVTV 899

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 900  DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 942


>gi|70794976|gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score = 1857 bits (4811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 878/923 (95%), Positives = 907/923 (98%)

Query: 136  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 195
            +IKKGHD EEVTETQ+FTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPYDQGGYFII
Sbjct: 1    IIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFII 60

Query: 196  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAK 255
            NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS+MFVRMLSR SAK
Sbjct: 61   NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRASAK 120

Query: 256  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA 315
            GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEA
Sbjct: 121  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFLDTQMMELLRPSLEEA 180

Query: 316  FVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 375
            FVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVG G++CETKKAYYFGYI
Sbjct: 181  FVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYI 240

Query: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 435
            IHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK+
Sbjct: 241  IHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKE 300

Query: 436  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI
Sbjct: 301  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 360

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW 
Sbjct: 361  GREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWS 420

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
            TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LV TLR+LRR+VDVNTEVGV+RDI LK
Sbjct: 421  TENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVNTLRKLRRQVDVNTEVGVIRDIHLK 480

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            ELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRE+PEDGGWHDLVAKG+IEY+DTEE
Sbjct: 481  ELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRETPEDGGWHDLVAKGYIEYVDTEE 540

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EETTMISMTINDLV ARL+PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 541  EETTMISMTINDLVTARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 600

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY
Sbjct: 601  SAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 660

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSY
Sbjct: 661  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSY 720

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            DKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q+E QGQASRYTRRDHS SLRHSE+GMVDQV
Sbjct: 721  DKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEPQGQASRYTRRDHSTSLRHSESGMVDQV 780

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            LLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV
Sbjct: 781  LLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 840

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035
            NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM
Sbjct: 841  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 900

Query: 1036 YNGHTGRRLTAMIFLGPTYYQRL 1058
            YNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 901  YNGHTGRKLSAMIFLGPTYYQRL 923


>gi|384245445|gb|EIE18939.1| RNA polymerase II second largest subunit [Coccomyxa subellipsoidea
            C-169]
          Length = 1170

 Score = 1843 bits (4774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 861/1173 (73%), Positives = 1003/1173 (85%), Gaps = 8/1173 (0%)

Query: 8    YEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 67
            Y    ++E+  ++ EITQEDAWAVISA+FE KGLVRQQLDSF+EFI + MQEIVDE   +
Sbjct: 2    YSSAAEEEDLPDDAEITQEDAWAVISAFFEAKGLVRQQLDSFNEFINSNMQEIVDEYGTL 61

Query: 68   EIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 127
             ++PESQHNPG  ++  E  YK+ FGQIYLSKP MTE+DGET  LFPK ARLRNLTY+AP
Sbjct: 62   LVKPESQHNPGM-AELEEKEYKVEFGQIYLSKPTMTEADGETVVLFPKEARLRNLTYAAP 120

Query: 128  LYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY 187
            LY+D+ K VI +  +GE  TE + + K+FIG+VPIMLRSSYC+L++ + + LT+LGECPY
Sbjct: 121  LYIDIKKTVITRVPNGEAETEEESYPKIFIGEVPIMLRSSYCSLHERTNQQLTQLGECPY 180

Query: 188  DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVR 247
            DQGGYF++NGSEKVLIAQE+M+ N VYVF+K QP+KYAY AE RS+ E+  R  S+M +R
Sbjct: 181  DQGGYFVVNGSEKVLIAQERMANNQVYVFRKSQPSKYAYQAECRSVVENSTRNTSSMSIR 240

Query: 248  MLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMEL 307
            ML+R+   GG  GQ IRATLPYIR +IPI+I+FRALG  ADKDIL+H+ YDF DT MME 
Sbjct: 241  MLARS---GGKGGQAIRATLPYIRADIPILIIFRALGLTADKDILQHVVYDFNDTAMMEA 297

Query: 308  LRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETK 367
            LRPS+EEAF IQ Q+VALD+IGKRG+  GVTR+KRI YA++ILQ+EMLPHV  G+F ETK
Sbjct: 298  LRPSIEEAFPIQTQEVALDFIGKRGSNPGVTREKRIHYARDILQREMLPHVAIGEFSETK 357

Query: 368  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 427
            KAY+FGY++HRLLL ALGRR +DDRDHY NKRLDL GPLL  LFR LFRKLT+DVR++VQ
Sbjct: 358  KAYFFGYMVHRLLLVALGRRDQDDRDHYCNKRLDLGGPLLANLFRQLFRKLTKDVRSHVQ 417

Query: 428  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 487
            K VD GK++NL  A+   TIT GL+YS+ATGNWG    AG RAGVSQVLNRLTYASTLSH
Sbjct: 418  KAVDRGKEINLMAAVNKDTITRGLRYSIATGNWGMQGTAGMRAGVSQVLNRLTYASTLSH 477

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRR++SPIGREGKLAKPRQLHNSQWG++CPAETPEGQACGLVKNLALM Y++VG  + PI
Sbjct: 478  LRRISSPIGREGKLAKPRQLHNSQWGVICPAETPEGQACGLVKNLALMSYVSVGCPSAPI 537

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 607
             EFLEEW TEN EEI+P+VI +ATK+FVNG WVGIHR P +LV TLR++RR+VD++TEVG
Sbjct: 538  GEFLEEWSTENLEEINPSVILEATKVFVNGVWVGIHRQPAVLVNTLRKMRRQVDISTEVG 597

Query: 608  VVRDIRLKELRIYTDYGRCSRPLFIV--EKQRLLIKKRDIIALQQRESPEDGGWHDLVAK 665
            +V DIRL+ELR+YTDYGRC RPLFIV  +++RL I K DI  LQ+RE     GW++LV K
Sbjct: 598  IVHDIRLQELRLYTDYGRCCRPLFIVDPDRKRLTITKDDIRQLQEREVTH-FGWNELVHK 656

Query: 666  GFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPD 725
            G IEYIDTEEEETTMI+M I DL  AR     AY++TYTHCEIHPS+ILGVCASIIPFPD
Sbjct: 657  GCIEYIDTEEEETTMIAMEIKDLENARTPGRVAYSETYTHCEIHPSMILGVCASIIPFPD 716

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQSAMGKQAMG+YVTNYQ RMDT AYVLYYPQKPLVTTRAMEHLHFR+LPAG
Sbjct: 717  HNQSPRNTYQSAMGKQAMGMYVTNYQTRMDTQAYVLYYPQKPLVTTRAMEHLHFRELPAG 776

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
             N IVAIACYSGYNQEDS++MNQSSIDRGFFRS+FFR+YR EEKK G+LV+E    PDRS
Sbjct: 777  QNTIVAIACYSGYNQEDSLMMNQSSIDRGFFRSMFFRTYRAEEKKQGSLVQEVIEVPDRS 836

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLR 905
             T+ MRHG+YDKLDDDG+APPGTRVSGEDVIIGKT+P++ DE  G A R++++D S SLR
Sbjct: 837  VTVAMRHGTYDKLDDDGIAPPGTRVSGEDVIIGKTSPLA-DEQPGVAQRFSKKDVSTSLR 895

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
            +SE+GM+DQV++TTNA+G RFVK+RVRS+RIPQ+GDKF+SRHGQKGT+GMTYTQEDMPWT
Sbjct: 896  NSESGMIDQVMVTTNAEGQRFVKIRVRSIRIPQVGDKFASRHGQKGTIGMTYTQEDMPWT 955

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
             EGI PD+I+NPHAIPSRMTIG L+E +M KVAA +GKEGDATPF +VTVDNIS ALH C
Sbjct: 956  SEGIVPDLIINPHAIPSRMTIGHLVEALMSKVAALVGKEGDATPFAEVTVDNISAALHTC 1015

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GYQ RG+ETMYNGHTGRRL A IFL PTYYQRLKHMVDDKIHSRGRGPVQILTRQP EGR
Sbjct: 1016 GYQSRGWETMYNGHTGRRLQAQIFLNPTYYQRLKHMVDDKIHSRGRGPVQILTRQPVEGR 1075

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECR 1145
            +RDGGLRFGEMERDC+I+HG++ FLKERLFDQSDAYRVHVC+ CGL A+ANLKKN F C 
Sbjct: 1076 ARDGGLRFGEMERDCIISHGSAAFLKERLFDQSDAYRVHVCDRCGLFAVANLKKNQFHCP 1135

Query: 1146 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
             CKN T IVQVH+PYACKLLFQELMAMAIAPRM
Sbjct: 1136 ACKNTTGIVQVHMPYACKLLFQELMAMAIAPRM 1168


>gi|307103930|gb|EFN52187.1| hypothetical protein CHLNCDRAFT_59036 [Chlorella variabilis]
          Length = 1175

 Score = 1829 bits (4738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 858/1164 (73%), Positives = 987/1164 (84%), Gaps = 10/1164 (0%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ- 80
            EI  +DAWAVISAYFEEKGLVRQQLDSF++FI  ++QEIVDE+  I I P+SQH PG Q 
Sbjct: 16   EIDDQDAWAVISAYFEEKGLVRQQLDSFNDFINTSLQEIVDENKLISITPQSQHVPGMQV 75

Query: 81   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
             D  E I+++ FGQIYLSKP+  E+DGETA LFPK ARLRNLTY+APLYVD+ +R     
Sbjct: 76   EDDVEKIFEVEFGQIYLSKPVFIEADGETAVLFPKEARLRNLTYAAPLYVDIERRDKVVH 135

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
             DG E  E   + KVF+G VPIMLRS YC L   SE+DL +LGECPYDQGGYF+INGSEK
Sbjct: 136  SDGSEEVEVTPYPKVFLGDVPIMLRSDYCNLSGRSERDLCDLGECPYDQGGYFVINGSEK 195

Query: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
            VLIAQE+M+ NHVYVF+K QP+KYAYVAE RS+ E   R  STM V+MLSR   KG  +G
Sbjct: 196  VLIAQERMANNHVYVFRKSQPSKYAYVAECRSVVEGSTRTVSTMQVKMLSRAGQKG--AG 253

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
            Q IRA++PY+R +IPI+I+FRALGFVADKDILEHI YDF DT MME LRPS+EEAF IQ+
Sbjct: 254  QCIRASIPYVRADIPILIIFRALGFVADKDILEHIVYDFGDTTMMEALRPSIEEAFPIQS 313

Query: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            Q+VALDYIGKRG+T+G TR+ RI+YA+E+LQKE+LPHVG  +FCETKKAY+FGY+IHRLL
Sbjct: 314  QEVALDYIGKRGSTIGATRNARIQYARELLQKELLPHVGMEEFCETKKAYFFGYVIHRLL 373

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
            L ALGRR EDDRDHYGNKRLDL GPLL  LFR LFRKL++DVR YVQKCVD GK++NL  
Sbjct: 374  LVALGRREEDDRDHYGNKRLDLGGPLLANLFRQLFRKLSKDVRGYVQKCVDKGKEINLTS 433

Query: 441  AIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 500
            AI   TIT GL+YSLATGNWG   A   R GVSQVLNRLTYASTLSHLRR+NSPIGREGK
Sbjct: 434  AINKDTITRGLRYSLATGNWGVVGAGEVRPGVSQVLNRLTYASTLSHLRRINSPIGREGK 493

Query: 501  LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
            +AKPRQLHNSQWGM+CPAETPEGQACGLVKNLALM YI+VG A+ P+L+FL+EW TE+ E
Sbjct: 494  IAKPRQLHNSQWGMICPAETPEGQACGLVKNLALMTYISVGCASNPVLDFLQEWATEDLE 553

Query: 561  EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIY 620
            EISP+VIP+ATKIFVNG WVGIHRDP+ LV+TLR +RR+VD++TEVGVV DIRL+ELR+Y
Sbjct: 554  EISPSVIPKATKIFVNGVWVGIHRDPQTLVETLRAMRRQVDISTEVGVVHDIRLQELRLY 613

Query: 621  TDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEYIDTEEEETT 679
            TDYGRC RPLFIVE Q + +KKRDII LQ RE  E G  W  ++  G+IEY+D EEEETT
Sbjct: 614  TDYGRCCRPLFIVEDQAVKVKKRDIINLQNRE--ETGFTWQSMIEAGYIEYVDVEEEETT 671

Query: 680  MISMTINDLVQARLHPEEAYADT---YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
            MI+M INDL  AR+  + A A +   YTHCEIHP++ILGVCASI+PFPDHNQSPRNTYQS
Sbjct: 672  MIAMFINDLRLARIAEDAATASSIALYTHCEIHPAMILGVCASIVPFPDHNQSPRNTYQS 731

Query: 737  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
            AMGKQAMG+YVTNYQ RMDT  YVL+YPQKPLVTTR ME+LHFR+LPAGIN IVAIACYS
Sbjct: 732  AMGKQAMGMYVTNYQVRMDTQGYVLFYPQKPLVTTRNMEYLHFRELPAGINTIVAIACYS 791

Query: 797  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 856
            GYNQEDS +MNQSSIDRG FRS+FFRSY+ EEKK G+LV+E   RP+R  T G RHG+YD
Sbjct: 792  GYNQEDSTMMNQSSIDRGIFRSIFFRSYKTEEKKQGSLVQESIERPNREITAGTRHGTYD 851

Query: 857  KLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVL 916
            KLDDDG+APPGTRVSG+D++IGKT+PI  D+  G   RY+++D S +LRHSE+GM+D VL
Sbjct: 852  KLDDDGIAPPGTRVSGDDIVIGKTSPIP-DDGSGLPQRYSKKDASTALRHSESGMIDSVL 910

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            +TT ADG RFVK+RVRSVRIPQ+GDKF+SRHGQKGT+G+TYTQEDMP++ EGI+PD+I+N
Sbjct: 911  VTTGADGQRFVKMRVRSVRIPQVGDKFASRHGQKGTIGITYTQEDMPFSAEGISPDLIIN 970

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1036
            PHAIPSRMTIG L+E +M KVAA MGKEGDATPFT VTVDNIS ALH+CGYQ RG+E MY
Sbjct: 971  PHAIPSRMTIGHLVEALMSKVAACMGKEGDATPFTSVTVDNISAALHRCGYQSRGWEVMY 1030

Query: 1037 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1096
            NGHTGR+L A IFL PTYYQRLKHMVDDKIHSRGRGPVQILTRQP EGR+RDGGLRFGEM
Sbjct: 1031 NGHTGRQLQAQIFLNPTYYQRLKHMVDDKIHSRGRGPVQILTRQPVEGRARDGGLRFGEM 1090

Query: 1097 ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQV 1156
            ERDC+I+HGA+ FLKERL+DQSDAYRVHVC  CGLIA+ANLKKN F C  CKN T IVQV
Sbjct: 1091 ERDCIISHGAAAFLKERLYDQSDAYRVHVCSVCGLIAVANLKKNQFYCTACKNTTGIVQV 1150

Query: 1157 HIPYACKLLFQELMAMAIAPRMLT 1180
             IPYACKLLFQELMAM IAPRM+ 
Sbjct: 1151 FIPYACKLLFQELMAMCIAPRMIV 1174


>gi|440801047|gb|ELR22072.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
            str. Neff]
          Length = 1196

 Score = 1822 bits (4720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 858/1156 (74%), Positives = 991/1156 (85%), Gaps = 13/1156 (1%)

Query: 29   WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
            W VISAYFEEKGLVRQQLDSFD FIQNTMQE+VDES D+ ++PESQH PG      +T Y
Sbjct: 47   WTVISAYFEEKGLVRQQLDSFDAFIQNTMQELVDESPDLILQPESQHKPGAGPQ-TQTRY 105

Query: 89   KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI-KKGHDGEEVT 147
             I+FGQIYLS+P MTE+DG T  + P  ARLRNLTYSAPL+VD++K  I   G +GE   
Sbjct: 106  IINFGQIYLSRPTMTEADGSTQAMLPNEARLRNLTYSAPLFVDMSKTTITAAGEEGETHQ 165

Query: 148  ETQDFTKVFIGKVPIMLRSSYCTLY-QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206
             T++ ++VFIGKVPIMLRS+YC L    S+KDLTELGECPYDQGGYF+INGSEKVLIAQE
Sbjct: 166  STEELSRVFIGKVPIMLRSNYCMLAGAPSDKDLTELGECPYDQGGYFVINGSEKVLIAQE 225

Query: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266
            KMS NHVYVFKK+ P+KYAYVAE+RS  E+ +RP STM+V+M+ R+    GS GQ ++AT
Sbjct: 226  KMSHNHVYVFKKQAPSKYAYVAEIRSCLETGSRPTSTMYVKMMQRS----GSKGQTLKAT 281

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            +PYIR +IPIIIVFRALGFVAD++ILE I YDF +  MME+LRPSLEEAFVIQ+Q VALD
Sbjct: 282  IPYIRQDIPIIIVFRALGFVADREILELIVYDFDNKDMMEMLRPSLEEAFVIQDQAVALD 341

Query: 327  YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
            YIGKRG T G TR+KRIKYAKEILQKEMLPHVG   +CETKKAY+FGYIIHRLLL A G+
Sbjct: 342  YIGKRGTTTGATREKRIKYAKEILQKEMLPHVGISQYCETKKAYFFGYIIHRLLLAAQGK 401

Query: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
            R  DDRDHYGNKRLDLAGPLLG LFR LF+KL +DVR Y+QKCVD+GK+ NL  A+K+KT
Sbjct: 402  RPLDDRDHYGNKRLDLAGPLLGTLFRQLFKKLNKDVRGYLQKCVDSGKEFNLMMAVKSKT 461

Query: 447  ITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 506
            IT+GLKYSLATGNW    + G ++GVSQVLNRLT+ASTLSHLRRLN+PIGREGKLAKPRQ
Sbjct: 462  ITNGLKYSLATGNWTSTRSVGAKSGVSQVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQ 521

Query: 507  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 566
            LHN+ WGM+CPAETPEGQACGLVKNLALM YI+VGSA+ PILEFLEEW TEN EEISP+ 
Sbjct: 522  LHNTHWGMICPAETPEGQACGLVKNLALMAYISVGSASAPILEFLEEWSTENLEEISPSN 581

Query: 567  IPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 626
            IP ATKIFVNG WVGIHR P+ LV+TLR LRR VDV+ EV VVRDIR +ELR+YTD GRC
Sbjct: 582  IPAATKIFVNGAWVGIHRQPDHLVQTLRSLRRCVDVSAEVSVVRDIREQELRLYTDAGRC 641

Query: 627  SRPLFIVEKQRLLIKK---RDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISM 683
             RPLFIV+KQRLL+KK   RDI  LQQ ES  + GW  LV++GF+EYID EEEET MI+M
Sbjct: 642  CRPLFIVDKQRLLLKKSDIRDIQKLQQDESLSEKGWSHLVSQGFVEYIDCEEEETVMIAM 701

Query: 684  TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
            TI+DL ++R   EEAY+ TYTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 702  TIDDLKKSR--SEEAYSYTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAM 759

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+Y TNYQ RMDTLA+VLYYPQKPL+TT +MEHLHFR+LP+G N I+AIACYSGYNQEDS
Sbjct: 760  GVYTTNYQLRMDTLAHVLYYPQKPLITTHSMEHLHFRKLPSGQNGIIAIACYSGYNQEDS 819

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            ++MNQSS+DRGFFRS+F+RSY D EK MG    E+F +P R +TMGMRHGSY+K++DDGL
Sbjct: 820  LVMNQSSVDRGFFRSVFYRSYVDSEKHMGQY-DEEFEKPIREDTMGMRHGSYEKIEDDGL 878

Query: 864  APPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG 923
              PGTRVSG+D+IIGKTTP+S +E   +A R++++D SIS+R SETG++D+V+L+TN+DG
Sbjct: 879  IAPGTRVSGDDIIIGKTTPVSPNEEDTRAQRFSKKDSSISVRSSETGIIDKVMLSTNSDG 938

Query: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
             +F KVRVRSVR PQIGDKFSSRHGQKGTVG+ Y QEDMP+ +EGITPDIIVNPHAIPSR
Sbjct: 939  YKFCKVRVRSVRTPQIGDKFSSRHGQKGTVGIMYRQEDMPFNIEGITPDIIVNPHAIPSR 998

Query: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043
            MTIGQLIEC+MGKV+A  G+EGDATPFT+ TV++IS  LH  GYQ RG E MYNGHTGR+
Sbjct: 999  MTIGQLIECLMGKVSATTGEEGDATPFTNTTVESISDLLHGVGYQRRGNEVMYNGHTGRK 1058

Query: 1044 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1103
            L A  F+GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+
Sbjct: 1059 LEAQFFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIS 1118

Query: 1104 HGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1163
            HGA+ FLKERL+DQSDAYRVHVC+ CG+IAIANL+KN+FECR C+NKT I QVHIPYACK
Sbjct: 1119 HGAAQFLKERLYDQSDAYRVHVCDLCGMIAIANLRKNTFECRSCRNKTQISQVHIPYACK 1178

Query: 1164 LLFQELMAMAIAPRML 1179
            LLFQELM+M IAPRML
Sbjct: 1179 LLFQELMSMCIAPRML 1194


>gi|68131836|gb|AAY85196.1| RNA polymerase II second largest subunit [Chimonanthus praecox]
          Length = 906

 Score = 1811 bits (4691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 856/907 (94%), Positives = 891/907 (98%), Gaps = 1/907 (0%)

Query: 108  ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
            ETATLFPKAARLRNLTYSAPLYVDVTKR+IKKGHD EEVTETQ+FTKVFIGKVPIMLRSS
Sbjct: 1    ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSS 60

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
            YCT+YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61   YCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AEVRSMAE+QNRPPS+MFVRMLSR S+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121  AEVRSMAENQNRPPSSMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
            DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT++KRIKYAK
Sbjct: 181  DKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAK 240

Query: 348  EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
            EILQKEMLPHVGTG++CETKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241  EILQKEMLPHVGTGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
            GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT+TSGLKYSLATGNWGQANAAG
Sbjct: 301  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTVTSGLKYSLATGNWGQANAAG 360

Query: 468  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
            TRAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361  TRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420

Query: 528  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
            LVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P+
Sbjct: 421  LVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPD 480

Query: 588  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
            +LVKTLR LRRRVDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI  
Sbjct: 481  LLVKTLRLLRRRVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRV 540

Query: 648  LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
            LQQRE+ E+ GWHDLVAKGFIEY+DTEEEETTMISMTI+DLV ARL+PEEAY+DTYTHCE
Sbjct: 541  LQQRETQEE-GWHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPEEAYSDTYTHCE 599

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKP
Sbjct: 600  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 659

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 660  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 719

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+QDE
Sbjct: 720  EKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDE 779

Query: 888  AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
            +QGQ SRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVR+PQIGDKFSSRH
Sbjct: 780  SQGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRH 839

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA
Sbjct: 840  GQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 899

Query: 1008 TPFTDVT 1014
            TPFTDVT
Sbjct: 900  TPFTDVT 906


>gi|303273466|ref|XP_003056094.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462178|gb|EEH59470.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1172

 Score = 1795 bits (4650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 850/1165 (72%), Positives = 982/1165 (84%), Gaps = 12/1165 (1%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV-DESADIEIRPESQHNPGQQS 81
            I QEDAW VIS++FEEKGL RQQLDSF+EFIQ+ MQEIV DE +  E+ PE QH PG++ 
Sbjct: 13   IGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHAMQEIVVDEMSSFELEPEQQHVPGEEG 72

Query: 82   DFA-ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
            +   +  YKISF QIYLSKPM+TE+DG T+TLFPK ARLRNLTYSAPLYVD+ K V    
Sbjct: 73   EGGEKKTYKISFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYVDMEKTVTTVT 132

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
             D ++  E +   KVFIGKVPIMLRS YC+L+ +++K+LTELGECPYD+GGYFIINGSEK
Sbjct: 133  LDSQKTEEVEKINKVFIGKVPIMLRSEYCSLHDHTDKELTELGECPYDEGGYFIINGSEK 192

Query: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
            VLIAQEKMS+NHVYVFKKRQP+KY +VAE RS  ES  R  S    RML     K     
Sbjct: 193  VLIAQEKMSSNHVYVFKKRQPSKYMWVAECRSSPESGARAASACVARMLHSPGTK--MEP 250

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
              IR TLPYIRT+IP+ +VFRALGFVADKDILEHI YDF D   MELLRPS+EEA  IQ+
Sbjct: 251  GCIRVTLPYIRTDIPLFVVFRALGFVADKDILEHIVYDFNDHDAMELLRPSIEEALPIQS 310

Query: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            ++VALDYIGKRG+ VGV+R+KRIKYA++ILQKE+LPHVG  + CET+KAYY GYI+HRLL
Sbjct: 311  KKVALDYIGKRGSAVGVSREKRIKYAQDILQKELLPHVGVDEECETRKAYYLGYIVHRLL 370

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
            LCALGRR EDDRDH+GNKR+DLAGPL+  LFR LFRKLT+DVR Y Q+CVD+GK++ L  
Sbjct: 371  LCALGRRNEDDRDHFGNKRMDLAGPLIAILFRQLFRKLTKDVRLYCQRCVDSGKEIQLTL 430

Query: 441  AIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 500
            A+KAKTITSGLKYSLATGNWG   A   RAGVSQVLNRL+++STLSHLRRLNSPIGREGK
Sbjct: 431  AVKAKTITSGLKYSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLRRLNSPIGREGK 490

Query: 501  LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
            LAKPRQLHNS WGM+CPAETPEGQACGLVKNL+LM  ++VGS + P+LEFLEEW  EN E
Sbjct: 491  LAKPRQLHNSHWGMVCPAETPEGQACGLVKNLSLMALVSVGSPSSPVLEFLEEWTMENLE 550

Query: 561  EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIY 620
            EISP+VI  ATKIFVNG WVG+HRDP  LV+TLR LRR+VD+ TEVG+V DIRL+ELR+Y
Sbjct: 551  EISPSVISHATKIFVNGVWVGVHRDPADLVRTLRELRRKVDITTEVGIVHDIRLQELRLY 610

Query: 621  TDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTM 680
            TDYGRC RPLFIVE QR+ IKKR+I  LQ+++      W+DLV+ G IEY+DTEEEETTM
Sbjct: 611  TDYGRCIRPLFIVEDQRMKIKKRNIEMLQEKDI-TGFTWNDLVSSGCIEYVDTEEEETTM 669

Query: 681  ISMTINDLVQARL--HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 738
            ISMTI DLVQARL  + E +    YTHCEIHPS+ILG+C SIIPFPDHNQSPRNTYQSAM
Sbjct: 670  ISMTIEDLVQARLLANNETSVQHMYTHCEIHPSMILGICGSIIPFPDHNQSPRNTYQSAM 729

Query: 739  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 798
            GKQAMG+YVTN+Q RMDTLAYVL+YPQKPLVTTRAMEHLHFR+LPAG+N +V I CY+GY
Sbjct: 730  GKQAMGMYVTNFQLRMDTLAYVLFYPQKPLVTTRAMEHLHFRELPAGVNVVVGIMCYTGY 789

Query: 799  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 858
            NQEDSVIMNQSSIDRG FRS+F+RS++DEEKK G+L KED   P    T+GMRHG+Y KL
Sbjct: 790  NQEDSVIMNQSSIDRGLFRSIFYRSFKDEEKKQGSLTKEDLECPSPETTLGMRHGTYGKL 849

Query: 859  DDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLT 918
            D DGL  PGTRVSGED+IIGKT+P+  D+    ++R+T+RD S  +++SETG++DQVLLT
Sbjct: 850  DKDGLICPGTRVSGEDIIIGKTSPLPDDDPSAASNRFTKRDCSTGMKNSETGIIDQVLLT 909

Query: 919  TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 978
            TN  GLRFVK+RVRS R PQ+GDKFSSRHGQKGT+GMTYTQEDMP+T EG+ PDIIVNPH
Sbjct: 910  TNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQKGTIGMTYTQEDMPFTCEGVVPDIIVNPH 969

Query: 979  AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1038
            AIPSRMTIGQL+EC+MGKVAA MGKEGDATPFT VTV+NIS  LH+CGYQ RG E MYNG
Sbjct: 970  AIPSRMTIGQLVECLMGKVAAMMGKEGDATPFTPVTVENISDMLHQCGYQKRGNEVMYNG 1029

Query: 1039 HTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1098
            HTGR+L A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP EGRSRDGGLRFGEMER
Sbjct: 1030 HTGRKLEAKIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMER 1089

Query: 1099 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD---IVQ 1155
            DC+I+HGA+ FLKERL DQSDAYRVHVC+ CGLIA+ANLK  +FEC  CKN ++   +VQ
Sbjct: 1090 DCIISHGAAAFLKERLMDQSDAYRVHVCQTCGLIAVANLKNQTFEC--CKNPSERMKVVQ 1147

Query: 1156 VHIPYACKLLFQELMAMAIAPRMLT 1180
            V +PYACKLLFQELM+MA+APR++T
Sbjct: 1148 VLLPYACKLLFQELMSMAVAPRLVT 1172


>gi|145340678|ref|XP_001415447.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575670|gb|ABO93739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1174

 Score = 1791 bits (4639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 847/1165 (72%), Positives = 986/1165 (84%), Gaps = 12/1165 (1%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            I QEDAW VIS++FEEKGLVRQQLDSF+EFIQ+TMQEIVDE  +IE+ PE QH PGQ  D
Sbjct: 14   IGQEDAWVVISSFFEEKGLVRQQLDSFNEFIQHTMQEIVDEMREIELTPEHQHMPGQDID 73

Query: 83   FAET-IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
              E   YKISF QIYLSKPM+TE+DG T TLFPK ARLRNLTYSAPLYVD+ K V     
Sbjct: 74   SMEKKTYKISFNQIYLSKPMVTEADGYTTTLFPKEARLRNLTYSAPLYVDMVKEVTTVQP 133

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            DGE   E +   K FIGKVPIMLRS YC+L+ +++K+LTELGECPYD+GGYF+INGSEKV
Sbjct: 134  DGETTVEKEILNKNFIGKVPIMLRSDYCSLHGHTDKELTELGECPYDEGGYFVINGSEKV 193

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 261
            LIAQE+MSTNHVYVF+K+QP+K+ + AE RS  E  +R  S+  +R L     K      
Sbjct: 194  LIAQERMSTNHVYVFEKKQPSKFMWQAECRSQPERGSRGASSCVMRQLHAPGTKDAPGP- 252

Query: 262  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 321
             IR TLPYIRT+IPI +VFRALGFVADKDILEHI YD  D +MME+LRPS+EEAFVIQ+Q
Sbjct: 253  -IRCTLPYIRTDIPIFVVFRALGFVADKDILEHIVYDLADNEMMEMLRPSIEEAFVIQSQ 311

Query: 322  QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 381
            +VALD+IGKRG+ VGV+R+KRIKYAKEILQKE+LPHVG  + CETKKAY+ GY+IHRLLL
Sbjct: 312  EVALDFIGKRGSAVGVSREKRIKYAKEILQKELLPHVGVREDCETKKAYFLGYMIHRLLL 371

Query: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 441
            C+LGRR EDDRDHYGNKRLDL GPLL  LFR LFRKLT+DVR Y Q+C+D+GK++ LQ A
Sbjct: 372  CSLGRRPEDDRDHYGNKRLDLGGPLLAQLFRQLFRKLTKDVRLYCQRCIDSGKEIQLQLA 431

Query: 442  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501
            IKAKTIT GLKYSLATGNWG   AA  RAGVSQVLNRL+Y+STLSHLRR+NSPIGREGKL
Sbjct: 432  IKAKTITQGLKYSLATGNWGSQGAADIRAGVSQVLNRLSYSSTLSHLRRINSPIGREGKL 491

Query: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561
            AKPRQLHNS WGM+CPAETPEGQA GLVKNLALM  ++VGS + PILEFL+EW  EN EE
Sbjct: 492  AKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMALVSVGSPSEPILEFLDEWTMENLEE 551

Query: 562  ISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 621
            ISP++I ++TKIF+NG WVG+HR+P  LV+TLR+LRR+ D+++ V VV DIRLKELR+YT
Sbjct: 552  ISPSLIAESTKIFLNGVWVGVHRNPADLVRTLRKLRRQCDIDSSVSVVHDIRLKELRLYT 611

Query: 622  DYGRCSRPLFIVEK-QRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTM 680
            DYGRC+RPLFIVE  Q+L IKK+ I  L +++      W++LV  GFIEY+DTEEEETTM
Sbjct: 612  DYGRCTRPLFIVEDDQKLKIKKQHIELLTEKDV-TGYTWNELVTSGFIEYVDTEEEETTM 670

Query: 681  ISMTINDLVQARLHPEE--AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 738
            ISMTI+DLV  R   E+    A  YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAM
Sbjct: 671  ISMTIDDLVAGRHAVEQNTGVAINYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM 730

Query: 739  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 798
            GKQAMG+YVTNYQ RMDTL YV++YPQKPLVTTRAME+LHFR+LPAG NA+VAI CY+GY
Sbjct: 731  GKQAMGMYVTNYQIRMDTLGYVMFYPQKPLVTTRAMEYLHFRELPAGCNAVVAIMCYTGY 790

Query: 799  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 858
            NQEDSV+MNQS+IDRG FRSL++RS++DEEKK G+L +E+F RPDR   +GMRHG+YDKL
Sbjct: 791  NQEDSVLMNQSAIDRGLFRSLYYRSFKDEEKKQGSLSREEFERPDRDTCLGMRHGTYDKL 850

Query: 859  DDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLT 918
            DDDGL  PGTRVSG+D+IIGKT P+ +D+    + R++++D S  ++H+ETG++DQVLLT
Sbjct: 851  DDDGLICPGTRVSGDDIIIGKTAPLPEDDTAVLSKRFSKKDCSTGMKHAETGIIDQVLLT 910

Query: 919  TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 978
            TN  GLRFVK+RVRS+R PQ+GDKFSSRHGQKGTVGMTYTQEDMP+T EGITPDIIVNPH
Sbjct: 911  TNDQGLRFVKLRVRSMRTPQVGDKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIVNPH 970

Query: 979  AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1038
            AIPSRMTIGQL+ECIMGKVAA MGKEGDATPFT VT ++IS  LHKCGYQ RG E MYNG
Sbjct: 971  AIPSRMTIGQLVECIMGKVAACMGKEGDATPFTPVTAEDISSMLHKCGYQKRGNEVMYNG 1030

Query: 1039 HTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1098
            HTGR L A IF+GPTYYQRLKHMVDDKIHSRGRGPVQILTRQP EGRSRDGGLRFGEMER
Sbjct: 1031 HTGRMLDAQIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMER 1090

Query: 1099 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN---KTDIVQ 1155
            DC+++HGA+ FLKERL DQSDAYR+HVC+ CGLIA+ANLK  +FEC  CKN   +T +VQ
Sbjct: 1091 DCIMSHGAASFLKERLMDQSDAYRIHVCQKCGLIAVANLKNQTFEC--CKNPSERTSVVQ 1148

Query: 1156 VHIPYACKLLFQELMAMAIAPRMLT 1180
            V +PYACKLLFQELM+MAIAPR++T
Sbjct: 1149 VMVPYACKLLFQELMSMAIAPRLIT 1173


>gi|255073731|ref|XP_002500540.1| predicted protein [Micromonas sp. RCC299]
 gi|226515803|gb|ACO61798.1| predicted protein [Micromonas sp. RCC299]
          Length = 1178

 Score = 1782 bits (4615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 838/1170 (71%), Positives = 982/1170 (83%), Gaps = 17/1170 (1%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            I QEDAW VIS++FEEKGL RQQLDSF+EFIQ+TMQEIVDE +D  I PE QH PG+++D
Sbjct: 14   IGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHTMQEIVDEMSDFTIEPEEQHMPGEEAD 73

Query: 83   F-AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
               +  YK+ F QIYLSKPM+TE+DG T+TLFPK ARLRNLTYSAPLY+D+ K  I    
Sbjct: 74   GKGKKKYKVEFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYIDMAKSTITTTD 133

Query: 142  DGE-------EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI 194
            + +       E  +T+++ KVF GKVPIMLRS YC+L+ +++K+LTELGECPYD+GGYFI
Sbjct: 134  EIDATTGKYIETIDTEEYPKVFFGKVPIMLRSQYCSLHDHTDKELTELGECPYDEGGYFI 193

Query: 195  INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA 254
            INGSEKVLIAQEKMSTNHVYVF+KRQP+KY +VAE RS  ES  R  S+   R+      
Sbjct: 194  INGSEKVLIAQEKMSTNHVYVFEKRQPSKYMWVAECRSSPESGARAASSCMARLCHAPGT 253

Query: 255  KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEE 314
            K       I  T+PYIRTEIP+ +VFRALGFVADKDILEH+ YDF+D +MM+LLR S+EE
Sbjct: 254  K--DEAGVISVTIPYIRTEIPLFVVFRALGFVADKDILEHLVYDFEDHEMMQLLRNSIEE 311

Query: 315  AFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGY 374
            A VIQ+Q VALD+IGKRG+ VGVTR KRI+YA+EILQKE+LPHVG  + CETKKAY+ GY
Sbjct: 312  AQVIQSQDVALDFIGKRGSAVGVTRPKRIQYAREILQKELLPHVGVNEGCETKKAYFLGY 371

Query: 375  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
            I++RLLLCALGR+ EDDRDH+GNKR+DL+GPL+  LFR LFRK+T+DVR Y Q+C+D+GK
Sbjct: 372  IVNRLLLCALGRKKEDDRDHFGNKRMDLSGPLIAMLFRQLFRKVTKDVRLYSQRCIDSGK 431

Query: 435  DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
            D+ L  A+KAKTITSGLKYSLATGNWG   A   RAGVSQVLNRL+++STLSHLRRLNSP
Sbjct: 432  DIQLTLAVKAKTITSGLKYSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLRRLNSP 491

Query: 495  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
            IGREGKLAKPRQLHNS WGM+CPAETPEGQA GLVKNL+LM  ++VGS + P+LEFLEEW
Sbjct: 492  IGREGKLAKPRQLHNSHWGMVCPAETPEGQAVGLVKNLSLMCLVSVGSPSAPLLEFLEEW 551

Query: 555  GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
              EN EEISP+VI  ATKIFVNG WVG+HR+P  LV+TLR LRR++D+  EVGVV DI L
Sbjct: 552  SMENLEEISPSVIVNATKIFVNGVWVGVHREPAQLVQTLRNLRRKLDITIEVGVVHDIAL 611

Query: 615  KELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTE 674
            +ELR+YTDYGRC RPLFIVE   L+IKK+DI  L ++E      W+DLVA G IEY+DTE
Sbjct: 612  RELRLYTDYGRCIRPLFIVEDNHLVIKKKDIQMLYEKEI-TGYTWNDLVATGCIEYVDTE 670

Query: 675  EEETTMISMTINDLVQARLHPEEA-YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            EEETTMI+MTI++LV  R++ E       YTHCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 671  EEETTMIAMTIDELVGQRINAEPGGVKHMYTHCEIHPSMILGICASIIPFPDHNQSPRNT 730

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMG+YVTN+Q RMDTLAYVL+YPQKPLVTTRAMEHLHFR+LPAG+N +V I 
Sbjct: 731  YQSAMGKQAMGMYVTNFQIRMDTLAYVLFYPQKPLVTTRAMEHLHFRELPAGVNVVVGIM 790

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CY+GYNQEDSVIMNQSSIDRG FRS+F+RS++DEEKK G+L KE+  RP R  T+GMRHG
Sbjct: 791  CYTGYNQEDSVIMNQSSIDRGLFRSIFYRSFKDEEKKQGSLTKEELERPSRDTTLGMRHG 850

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
            +YDKLDDDGL  PGTRVSGED+IIGKT+P+ +D+    + R+T+RD S  +++SETG++D
Sbjct: 851  TYDKLDDDGLICPGTRVSGEDIIIGKTSPLPEDDPSAVSKRFTKRDCSTGMKNSETGIID 910

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QVLLTTN  GLRFVK+RVRS R PQ+GDKFSSRHGQKGT+GMTYTQEDMP+T EGI PDI
Sbjct: 911  QVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQKGTIGMTYTQEDMPFTCEGIVPDI 970

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            IVNPHAIPSRMTIGQL+EC+MGKVAA MGKEGDATPFT VTV++IS  LH CGYQ RG E
Sbjct: 971  IVNPHAIPSRMTIGQLVECLMGKVAAMMGKEGDATPFTPVTVESISDMLHMCGYQKRGNE 1030

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
             MYNGHTGR+L A IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP EGRSRDGGLRF
Sbjct: 1031 VMYNGHTGRKLEAKIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRF 1090

Query: 1094 GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN---K 1150
            GEMERDC+I+HGA+ FLKERL DQSDAYR+HVCE CGLIA+ANLK  +FEC  CKN   +
Sbjct: 1091 GEMERDCIISHGAAAFLKERLMDQSDAYRIHVCETCGLIAVANLKNQTFEC--CKNPSER 1148

Query: 1151 TDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            T +VQV +PYACKLLFQELM+MA+APR++T
Sbjct: 1149 TKVVQVMMPYACKLLFQELMSMAVAPRLVT 1178


>gi|68300794|gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
          Length = 873

 Score = 1757 bits (4550), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 833/873 (95%), Positives = 858/873 (98%)

Query: 108 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
           ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD EEVTETQDFTKVFIGKVPIMLRSS
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSS 60

Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
           YCT+YQNSEKDLTELGECP+DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61  YCTVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            EVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121 GEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288 DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
           DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240

Query: 348 EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
           EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
           GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
           TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420

Query: 528 LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
           LVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P+
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPD 480

Query: 588 MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
           +LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI A
Sbjct: 481 LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQA 540

Query: 648 LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
           LQQRES EDGGWHDLVAKGFIEY+DTEEEETTMISMTINDL+ A+L+PEEAY++TYTHCE
Sbjct: 541 LQQRESHEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLISAKLNPEEAYSETYTHCE 600

Query: 708 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
           IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKP
Sbjct: 601 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 660

Query: 768 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
           LVTTRAMEHLHFRQLPAGINAIVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 661 LVTTRAMEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 720

Query: 828 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
           EKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+
Sbjct: 721 EKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDD 780

Query: 888 AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
           AQGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRH
Sbjct: 781 AQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 840

Query: 948 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
           GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 841 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873


>gi|68131876|gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens]
          Length = 873

 Score = 1754 bits (4544), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 830/873 (95%), Positives = 859/873 (98%)

Query: 108 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
           ETATLFPKAARLRNLTYSAPLYVDVTKR+IKKGHD EEVTETQDF KVFIGKVPIMLRSS
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQDFAKVFIGKVPIMLRSS 60

Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
           YCT+YQNSEKDLTELGECP+DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61  YCTVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
           AEVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQY+RATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121 AEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYVRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288 DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
           DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240

Query: 348 EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
           EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
           GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
           TRAGVSQVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420

Query: 528 LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
           LVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P+
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPD 480

Query: 588 MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
           +LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI A
Sbjct: 481 LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRA 540

Query: 648 LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
           LQQRESPEDGGWHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEAY+DTYTHCE
Sbjct: 541 LQQRESPEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVTARLNPEEAYSDTYTHCE 600

Query: 708 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
           IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKP
Sbjct: 601 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 660

Query: 768 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
           LVTTRAMEHLHFRQLPAGIN+IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 661 LVTTRAMEHLHFRQLPAGINSIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 720

Query: 828 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
           EKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+QD+
Sbjct: 721 EKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDD 780

Query: 888 AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
           AQG +SRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRH
Sbjct: 781 AQGVSSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 840

Query: 948 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
           GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 841 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873


>gi|68131860|gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra]
          Length = 874

 Score = 1753 bits (4541), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 832/874 (95%), Positives = 859/874 (98%), Gaps = 1/874 (0%)

Query: 108 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
           ETATLFPKAARLRNLTYSAPLYVDVTKR+IKKGHD EEVTETQ+FTKVFIGKVPIMLRSS
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSS 60

Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
           YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            EVRSMAESQNRPPS+MFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121 GEVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288 DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
           DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240

Query: 348 EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
           EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
           GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
           TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420

Query: 528 LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
           LVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPE 480

Query: 588 MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
           +LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI A
Sbjct: 481 LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRA 540

Query: 648 LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
           LQQRESP+DGGWHDLVAKGFIEY+DTEEEETTMISMTINDL+ AR++PEEAY++TYTHCE
Sbjct: 541 LQQRESPDDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLITARINPEEAYSETYTHCE 600

Query: 708 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
           IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKP
Sbjct: 601 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 660

Query: 768 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
           LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 661 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 720

Query: 828 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
           EKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q+E
Sbjct: 721 EKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEE 780

Query: 888 AQGQA-SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 946
           +QGQA SRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSR
Sbjct: 781 SQGQASSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSR 840

Query: 947 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
           HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 841 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 874


>gi|68131824|gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxicon punctatum]
          Length = 873

 Score = 1753 bits (4540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 832/873 (95%), Positives = 858/873 (98%)

Query: 108 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
           ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD EEVTETQDFTKVFIGKVPIMLRSS
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSS 60

Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
           YCT+YQNSEKDLTELGECP+DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61  YCTVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
           AEVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121 AEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288 DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
           DKDILEHICYDF DTQMMELLRPSLEEAFVIQN QVALDYIGKRG+TVGVTR+KRIKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNHQVALDYIGKRGSTVGVTREKRIKYAK 240

Query: 348 EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
           EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
           GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
           TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS W MMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWXMMCPAETPEGQACG 420

Query: 528 LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
           LVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P+
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPD 480

Query: 588 MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
           +LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI A
Sbjct: 481 LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQA 540

Query: 648 LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
           LQQRES E+GGWHDLVAKGFIEY+DTEEEETTMISMTINDL+ ARL+PEEAY++TYTHCE
Sbjct: 541 LQQRESHEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLITARLNPEEAYSETYTHCE 600

Query: 708 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
           IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKP
Sbjct: 601 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 660

Query: 768 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
           LVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 661 LVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 720

Query: 828 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
           EKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+
Sbjct: 721 EKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDD 780

Query: 888 AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
           AQGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRH
Sbjct: 781 AQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 840

Query: 948 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
           GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 841 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873


>gi|68131850|gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentra formosa]
          Length = 873

 Score = 1750 bits (4532), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 829/873 (94%), Positives = 856/873 (98%)

Query: 108 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
           ETATLFPKAARLRNLTYSAPLYVDVTKR+IKKGHD EEVTETQ+F KVFIGKVPIMLRSS
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFKKVFIGKVPIMLRSS 60

Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
           YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
           AEVRSMAESQNRPPS+MFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121 AEVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288 DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
           DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT++KRIKYA+
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAR 240

Query: 348 EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
           EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
           GGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
           TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420

Query: 528 LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
           LVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR+PE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPE 480

Query: 588 MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
           +LVKTLR LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKKRDI A
Sbjct: 481 LLVKTLRALRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRA 540

Query: 648 LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
           LQ RESP++GGWHDLVAKG+IEY+DTEEEETTMISMTINDLV ARL+PEEAY++TYTHCE
Sbjct: 541 LQLRESPDEGGWHDLVAKGYIEYVDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCE 600

Query: 708 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
           IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKP
Sbjct: 601 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 660

Query: 768 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
           LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 661 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 720

Query: 828 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
           EKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDE
Sbjct: 721 EKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDE 780

Query: 888 AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
           +QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRH
Sbjct: 781 SQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 840

Query: 948 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
           GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 841 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873


>gi|68131890|gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
          Length = 865

 Score = 1743 bits (4515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 827/865 (95%), Positives = 851/865 (98%)

Query: 116 AARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 175
           AARLRNLTYSAPLYVDVTKRVIKKGHD EEVTETQ+F KVFIGKVPIMLRSSYCTLYQNS
Sbjct: 1   AARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQEFAKVFIGKVPIMLRSSYCTLYQNS 60

Query: 176 EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE 235
           EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE
Sbjct: 61  EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE 120

Query: 236 SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 295
           SQNRPPS+MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI
Sbjct: 121 SQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 180

Query: 296 CYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEML 355
           CYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEML
Sbjct: 181 CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEML 240

Query: 356 PHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 415
           PHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF
Sbjct: 241 PHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 300

Query: 416 RKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 475
           RKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
Sbjct: 301 RKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV 360

Query: 476 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 535
           LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALM
Sbjct: 361 LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALM 420

Query: 536 VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 595
           VYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTLR+
Sbjct: 421 VYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQ 480

Query: 596 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPE 655
           LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES E
Sbjct: 481 LRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESSE 540

Query: 656 DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILG 715
           +GGWHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEAY++TYTHCEIHPSLILG
Sbjct: 541 EGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVTARLNPEEAYSETYTHCEIHPSLILG 600

Query: 716 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
           VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAME
Sbjct: 601 VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAME 660

Query: 776 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
           HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV
Sbjct: 661 HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 720

Query: 836 KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRY 895
           KEDFGRP R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++QGQ+SRY
Sbjct: 721 KEDFGRPSRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSQGQSSRY 780

Query: 896 TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
           TRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGM
Sbjct: 781 TRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGM 840

Query: 956 TYTQEDMPWTVEGITPDIIVNPHAI 980
           TYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 841 TYTQEDMPWTVEGITPDIIVNPHAI 865


>gi|68131878|gb|AAY85217.1| RNA polymerase II second largest subunit [Muehlenbeckia platyclada]
          Length = 875

 Score = 1742 bits (4511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 832/875 (95%), Positives = 854/875 (97%), Gaps = 2/875 (0%)

Query: 108 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
           ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 60

Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
           YCTLY NSEKDLTELGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61  YCTLYHNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
           AEVRSMAE+QNRPPSTMFVRMLSR  AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121 AEVRSMAENQNRPPSTMFVRMLSRAGAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288 DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
           DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVT++KRIKYA+
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAR 240

Query: 348 EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
           EILQKEMLPHVG G++CETKKAYYFGYI+HRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
           GGLFRMLFRKLTRDVR YVQKCVD GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDQGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
           TRAGVSQVLNRLTYASTLSHLRRLNSP GREGKLAKPRQLHNSQWGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPTGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 420

Query: 528 LVKNLALMVYITVGSAAYPILEFLEEWGTENF-EEISPAVIPQATKIFVNGCWVGIHRDP 586
           LVKNLALMVYITVGSAAYPILEFLEEW TENF EEISPAVIPQA KIFVNGCWVGIHRDP
Sbjct: 421 LVKNLALMVYITVGSAAYPILEFLEEWSTENFEEEISPAVIPQAAKIFVNGCWVGIHRDP 480

Query: 587 EMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 646
           ++LVKTLR+LRRRVDVNTEVGVVRDI LKELRIYTDYGRCSRPLFIV+KQRLLIKKRDI 
Sbjct: 481 DLLVKTLRQLRRRVDVNTEVGVVRDIHLKELRIYTDYGRCSRPLFIVDKQRLLIKKRDIR 540

Query: 647 ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 706
           ALQ RE+PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL+ AR++PEEAY++TYTHC
Sbjct: 541 ALQLRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLITARVNPEEAYSETYTHC 600

Query: 707 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
           EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK
Sbjct: 601 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 660

Query: 767 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
           PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD
Sbjct: 661 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 720

Query: 827 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 886
           EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT+VSGEDVIIGKTTP++ D
Sbjct: 721 EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTKVSGEDVIIGKTTPLAPD 780

Query: 887 EAQG-QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
           EAQG  A+RYTRRDHSISLRHSE G+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS
Sbjct: 781 EAQGPNAARYTRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 840

Query: 946 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
           RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 841 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 875


>gi|68131852|gb|AAY85204.1| RNA polymerase II second largest subunit [Dillenia suffruticosa]
          Length = 868

 Score = 1734 bits (4492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 823/873 (94%), Positives = 852/873 (97%), Gaps = 5/873 (0%)

Query: 108 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
           ETATLFPKAARLRNLTYSAPLYVDVTKR+IKKGHD EEVTETQDF KVFIGKVPIMLRSS
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQDFAKVFIGKVPIMLRSS 60

Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
           YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+V
Sbjct: 61  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFV 120

Query: 228 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
           AEVRSMAESQNRPPS+MFVRMLSRTSAKG     YIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121 AEVRSMAESQNRPPSSMFVRMLSRTSAKG-----YIRATLPYIRTEIPIIIVFRALGFVA 175

Query: 288 DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
           DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAK
Sbjct: 176 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 235

Query: 348 EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
           EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 236 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 295

Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
           GGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAK ITSGLKYSLATGNWGQANAAG
Sbjct: 296 GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKPITSGLKYSLATGNWGQANAAG 355

Query: 468 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
           TRAGVSQVLNRLTY+STLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 356 TRAGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 415

Query: 528 LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
           LVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P+
Sbjct: 416 LVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPD 475

Query: 588 MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
           +LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI A
Sbjct: 476 LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRA 535

Query: 648 LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
           LQQRESPE+GGWHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEAY+DTYTHCE
Sbjct: 536 LQQRESPEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSDTYTHCE 595

Query: 708 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
           IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKP
Sbjct: 596 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 655

Query: 768 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
           LVTTRAMEHLHFRQLPAGIN+IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 656 LVTTRAMEHLHFRQLPAGINSIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 715

Query: 828 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
           EKKMGTL+KEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+QD+
Sbjct: 716 EKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDD 775

Query: 888 AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
           AQG +SRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRH
Sbjct: 776 AQGVSSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 835

Query: 948 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
           GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 836 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 868


>gi|68300792|gb|AAY89339.1| RNA polymerase II second largest subunit [Berberidopsis corallina]
          Length = 853

 Score = 1711 bits (4432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 818/873 (93%), Positives = 838/873 (95%), Gaps = 20/873 (2%)

Query: 108 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
           ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD EEVTETQDFTKVFIGKVPIMLRSS
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSS 60

Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
           YCT+YQNSEKDLTELGECP+DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61  YCTVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            EVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121 GEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288 DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
           DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240

Query: 348 EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
           EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
           GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
           TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420

Query: 528 LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
           LVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCW        
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCW-------- 472

Query: 588 MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
                       VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI A
Sbjct: 473 ------------VDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQA 520

Query: 648 LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
           LQQRES EDGGWHDLVAKGFIEY+DTEEEETTMISMTINDL+ A+L+PEEAY++TYTHCE
Sbjct: 521 LQQRESHEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLITAKLNPEEAYSETYTHCE 580

Query: 708 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
           IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKP
Sbjct: 581 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 640

Query: 768 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
           LVTTRAMEHLHFRQLPAGINAIVAI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE
Sbjct: 641 LVTTRAMEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 700

Query: 828 EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
           EKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+
Sbjct: 701 EKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDD 760

Query: 888 AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
           AQGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRH
Sbjct: 761 AQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 820

Query: 948 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
           GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI
Sbjct: 821 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 853


>gi|330796313|ref|XP_003286212.1| RNA polymerase II core subunit [Dictyostelium purpureum]
 gi|325083799|gb|EGC37242.1| RNA polymerase II core subunit [Dictyostelium purpureum]
          Length = 1169

 Score = 1706 bits (4417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 813/1164 (69%), Positives = 970/1164 (83%), Gaps = 17/1164 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ-Q 80
            +ITQED W VISAYF+EKGLVRQQLDSFDEFIQNTMQEI+DES  I +RPE+QH+PGQ Q
Sbjct: 17   DITQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPEAQHHPGQTQ 76

Query: 81   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK-- 138
                 + + + FGQIYLSKP   E DG +  + P  AR+RNLTYSAPL+VD+TK V+   
Sbjct: 77   IQNTVSTFSVKFGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGP 135

Query: 139  KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
            KG   E+    +   +VFIGKVPIMLRS YC LY+ +++DLT +GECP+DQGGYF+INGS
Sbjct: 136  KGKIEEQRRNDELLKRVFIGKVPIMLRSQYCMLYEATDRDLTTMGECPFDQGGYFVINGS 195

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKVLIAQEKM+ NHVYVFKK  P+KY+YVAE+RS  E+ +RP STM+++ML  T+   G 
Sbjct: 196  EKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNTNK--GP 253

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
             G  I+AT+PYI+ ++P+IIVFRALGFVADKDILEHICYDF D QMM+L+RPSLEE+FVI
Sbjct: 254  VG--IKATIPYIKQDVPVIIVFRALGFVADKDILEHICYDFNDAQMMDLMRPSLEESFVI 311

Query: 319  QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            Q+Q+VALDY+GKRG+T+G TR++RIK+A+E+LQKEMLPHV   +F ETKKA+YFGYI+HR
Sbjct: 312  QSQEVALDYLGKRGSTIG-TREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYIVHR 370

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LLL +L RR  DDRDH+ NKRLDLAGPLLG LFR LF+KLT+DVR Y+Q+C+D  K+   
Sbjct: 371  LLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDKDKEFIP 430

Query: 439  QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
              A+K+KTITSGLKYSLATGNWG + + GT++GV+QVLNRLT+ASTLSHLRRLN+PIGRE
Sbjct: 431  SSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLNTPIGRE 490

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WG++CP+ETPEGQACGLVKNL++M YI+VGSA+ PILEFLEEW TEN
Sbjct: 491  GKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLSMMSYISVGSASQPILEFLEEWTTEN 550

Query: 559  FEEISP-AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
             EEIS  + I  ATKIFVNG WVGIH  P+ L+ TLR LRR  DV+ EV VVRDIR KEL
Sbjct: 551  LEEISDLSSIFTATKIFVNGMWVGIHHQPDKLLGTLRLLRRCGDVSVEVSVVRDIREKEL 610

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            R+YTD GRC RPLF+V+  +L +KK  I  L    + ++  W DL+ +G IEYID EEEE
Sbjct: 611  RLYTDPGRCCRPLFVVQDNKLQVKKHHISKLIN--NSDEYKWQDLLNEGIIEYIDAEEEE 668

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T +I+MT +DLV       E    TYTHCEIHPS+ILGVC SIIPFPDHNQSPRNTYQ+A
Sbjct: 669  TVLIAMTPDDLVPL---ANEQIVHTYTHCEIHPSMILGVCCSIIPFPDHNQSPRNTYQAA 725

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TNYQ RMDT+A+VL+YPQKPLVTTR+ME+LHFR+LPAG NA VAIACYSG
Sbjct: 726  MGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNACVAIACYSG 785

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVI+NQS+IDRG FRS+F+R+Y+DE+KK  +L++E F +PDR    GMRHGSY+K
Sbjct: 786  YNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEQFEKPDRDTCAGMRHGSYEK 845

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            +D+DGL  PG RV+G+D+IIGKTTP+   +D+   +  R+T+RD S +LR SE G+VDQV
Sbjct: 846  IDEDGLVAPGVRVAGDDIIIGKTTPLPPQEDDLGPKTRRHTKRDSSTALRSSENGIVDQV 905

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +LTT+ +G +F KVRVRS+R+PQIGDKFSSRHGQKGT GM Y QED+PWTVEGI PDI+V
Sbjct: 906  ILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPWTVEGIVPDIVV 965

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035
            NPHAIPSRMTIGQLIEC++GKV+A  G EGDATPFTDVTV+ IS+ALHK GYQM G E M
Sbjct: 966  NPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEAISQALHKVGYQMTGHEVM 1025

Query: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1095
            YNGHTGRR+ A IF+GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGE
Sbjct: 1026 YNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGE 1085

Query: 1096 MERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQ 1155
            MERDCMI+HG++ FL+ERLFDQSD YRVHVC+ CGLIAIANLKKNSFECR CKNKT I Q
Sbjct: 1086 MERDCMISHGSAAFLRERLFDQSDHYRVHVCDICGLIAIANLKKNSFECRRCKNKTQISQ 1145

Query: 1156 VHIPYACKLLFQELMAMAIAPRML 1179
            V +PYA KLLFQELM+M+IAPRM 
Sbjct: 1146 VRMPYAAKLLFQELMSMSIAPRMF 1169


>gi|66806179|ref|XP_636812.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
 gi|74896933|sp|Q54J75.1|RPB2_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|60465215|gb|EAL63310.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
          Length = 1170

 Score = 1704 bits (4412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 817/1187 (68%), Positives = 978/1187 (82%), Gaps = 28/1187 (2%)

Query: 1    MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            MM DD          +++   +I+QED W VISAYF+EKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 5    MMNDD---------SQDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEI 55

Query: 61   VDESADIEIRPESQHNPGQQ--SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 118
            +DES  I +RPESQH+PGQ   S+   T + + FGQIYLSKP   E DG +  + P  AR
Sbjct: 56   IDESPPITLRPESQHHPGQAVVSNNVST-FSVKFGQIYLSKPT-AEIDGVSQQVTPNQAR 113

Query: 119  LRNLTYSAPLYVDVTKRVIKKGHD-GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEK 177
            +RNLTYSAPL+VD+TK V+      G+E    +   ++FIGKVPIMLRS YC L +  ++
Sbjct: 114  IRNLTYSAPLFVDITKTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDR 173

Query: 178  DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQ 237
            DLT +GEC +DQGGYFIINGSEKVLIAQEKM+ NHVYVFKK  P+KY+YVAE+RS  E+ 
Sbjct: 174  DLTTMGECSFDQGGYFIINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETG 233

Query: 238  NRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY 297
            +RP STM+++ML  T+   G  G  I+AT+PYI+ ++P+IIVFRALGFVADKDILEHICY
Sbjct: 234  SRPTSTMYLKMLHNTNK--GPVG--IKATVPYIKQDVPVIIVFRALGFVADKDILEHICY 289

Query: 298  DFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPH 357
            DF+D QMM+L+RPSLEE+FVIQ+Q+VALDY+GKRG+T+G TR++RIK+A+E+LQKEMLPH
Sbjct: 290  DFKDAQMMDLMRPSLEESFVIQSQEVALDYLGKRGSTMG-TREQRIKFAREVLQKEMLPH 348

Query: 358  VGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRK 417
            V   +F ETKKA+YFGYI HRLLL +L RR  DDRDH+ NKRLDLAGPLLG LFR LF+K
Sbjct: 349  VSVAEFYETKKAFYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKK 408

Query: 418  LTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLN 477
            LT+DVR Y+Q+C+D  K+     A+K+KTITSGLKYSLATGNWG + + GT++GV+QVLN
Sbjct: 409  LTKDVRLYLQRCIDKDKEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLN 468

Query: 478  RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 537
            RLT+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WG++CP+ETPEGQACGLVKNLA+M Y
Sbjct: 469  RLTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSY 528

Query: 538  ITVGSAAYPILEFLEEWGTENFEEISP-AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRL 596
            I+VGSA+ PILEFLEEW TEN EEIS  + I  ATKIFVNG WVGIH  P+ L+ TLR L
Sbjct: 529  ISVGSASQPILEFLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLL 588

Query: 597  RRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 656
            RR  DV+ EV VVRDIR KELR+YTD GRC RPLF+V+  ++ IKK+ I  L   +   +
Sbjct: 589  RRCGDVSVEVSVVRDIREKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINND---E 645

Query: 657  GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
              W DL+++G +EYID EEEET +I+MT  DLV     P E    TYTHCEIHPS+ILG+
Sbjct: 646  YKWQDLLSEGIVEYIDAEEEETVLIAMTPEDLVPM---PNEQIVHTYTHCEIHPSMILGI 702

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            C SIIPFPDHNQSPRNTYQ+AMGKQAMG+Y+TNYQ RMDT+A+VL+YPQKPLVTTR+ME+
Sbjct: 703  CCSIIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEY 762

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            LHFR+LPAG N  VAIACYSGYNQEDSVI+NQS+IDRG FRS+F+R+Y+DE+KK  +L++
Sbjct: 763  LHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQTSLME 822

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASR 894
            E F +P+R    GMRHGSY+K+DDDGL  PG RV+G+D+IIGKTTP+  S D+   +  R
Sbjct: 823  EVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRR 882

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            +T+RD S +LR SETG+VDQV+LTT+ +G +F KVRVRS+R+PQIGDKFSSRHGQKGT G
Sbjct: 883  HTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCG 942

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            M Y QED+P+TVEGI PDIIVNPHAIPSRMTIGQLIEC++GKV+A  G EGDATPFTDVT
Sbjct: 943  MAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVT 1002

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1074
            V+ IS+ALHK GYQM G E MYNGHTGRR+ A IF+GPTYYQRLKHMVDDKIHSR RGPV
Sbjct: 1003 VEAISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPV 1062

Query: 1075 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAI 1134
            QILTRQP EGRSRDGGLRFGEMERDCMI+HGA+ FLKERLFDQSD+YRVH+C+ CGLIAI
Sbjct: 1063 QILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLIAI 1122

Query: 1135 ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            ANLKKNSFECR CKNKT I Q+ +PYA KLLFQELM+M+IAPRM T+
Sbjct: 1123 ANLKKNSFECRRCKNKTQISQIRMPYAAKLLFQELMSMSIAPRMFTQ 1169


>gi|384497209|gb|EIE87700.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
            99-880]
          Length = 1215

 Score = 1679 bits (4349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/1221 (65%), Positives = 969/1221 (79%), Gaps = 47/1221 (3%)

Query: 1    MMEDDYDYEEQH---QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTM 57
            +M+D Y   E       E+  E+E ITQED W VI ++FEEKGLVRQQLDSFDEF+QNTM
Sbjct: 4    IMDDSYMMAENEYFLPDEQMYEDESITQEDCWTVIGSFFEEKGLVRQQLDSFDEFVQNTM 63

Query: 58   QEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAA 117
            QE+VDE++++ +    QH  G   D  +  Y I FGQIYLSKP MTE+DG +  +FP+ A
Sbjct: 64   QELVDENSNLVL----QH-VGGDGDVTKR-YIIDFGQIYLSKPTMTEADGSSQPMFPQEA 117

Query: 118  RLRNLTYSAPLYVDVTKRV-IKKGHD-GEEVTETQDF-----------TKVFIGKVPIML 164
            R+RNLTY+APLY+D++KR  I +  D    +T   DF           TKVF+GKVP+ML
Sbjct: 118  RIRNLTYAAPLYIDMSKRTQIARPQDPNNPITNPNDFFIDEGSEAPPKTKVFVGKVPVML 177

Query: 165  RSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKY 224
            RSSYC L+   EK++ +L EC +D GGYF+INGSEKVLIAQE+M+TN VYVF K  P  +
Sbjct: 178  RSSYCILHDMPEKEMHDLNECSFDMGGYFVINGSEKVLIAQERMATNTVYVFSKAPPATF 237

Query: 225  AYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
            ++ AE+RS  E  ++  S +F++M+ R SA+ G++GQ+IRA LPYIR+EIP++IVFRALG
Sbjct: 238  SFSAEIRSQPEKGSKNASPLFIKMM-RPSAERGTAGQFIRAALPYIRSEIPVVIVFRALG 296

Query: 285  FVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIK 344
             V+D+D+LEHICYD  D +M+ELL+PS+EEAFVIQ+Q VALD+IGKRG TVG TR++RIK
Sbjct: 297  QVSDRDVLEHICYDRNDYEMLELLKPSIEEAFVIQDQDVALDFIGKRGTTVGATRERRIK 356

Query: 345  YAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 404
            YA EILQKE+LPHVGT    ET+K+Y+FGY+IHRLLL AL RR  DDRDHYG KR+DLAG
Sbjct: 357  YASEILQKELLPHVGTAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAG 416

Query: 405  PLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QA 463
            PL+ GLFR+LFRKLTRDV  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLATGNWG Q 
Sbjct: 417  PLMAGLFRILFRKLTRDVAKYLQKCIESSREFNLSLAVKSNTITNGLKYSLATGNWGDQK 476

Query: 464  NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 523
             A   RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEG
Sbjct: 477  KAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 536

Query: 524  QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 583
            QACGLVKNLALM YI+VGS+A P++ FLEEW  EN EE+S   I  +TK+FVNG W+GIH
Sbjct: 537  QACGLVKNLALMSYISVGSSANPLIMFLEEWAMENLEELSATSIADSTKVFVNGVWIGIH 596

Query: 584  RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 643
            RDP  L+ +L+++RR VD++ EV +VRDIR KELR+YTD GRC RPLF+VE Q+L + + 
Sbjct: 597  RDPGELITSLKQMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFLVENQQLRLTRE 656

Query: 644  DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA----- 698
            D+  LQ  +  +D GW DL+A+G +EY+D +EEET MI MT  DL ++R+  +       
Sbjct: 657  DVGRLQ--DPDDDFGWQDLIAEGIVEYVDADEEETAMICMTPEDLAESRMATQYGAPLQQ 714

Query: 699  --------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
                          Y  T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 715  TRSLASRVKSQTGTYTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 774

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            +Y+TN+Q RMDTLA +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSV
Sbjct: 775  VYLTNFQMRMDTLANILYYPQKPLTTTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSV 834

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRSLFFR+Y D EKK G +  E+F +P R +T+ ++HG+Y+KL++DGL 
Sbjct: 835  IMNQSSIDRGLFRSLFFRTYMDAEKKAGMMFMEEFEKPTRESTLRLKHGTYEKLEEDGLI 894

Query: 865  PPGTRVSGEDVIIGKTTPI-SQDEAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
             PGTRVSG+D+IIGKT PI ++ E  GQ  + + +RD S  LR +ETG+VDQV+LTTN D
Sbjct: 895  APGTRVSGDDIIIGKTAPIPAESEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQD 954

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            GL+FVKVRVRS R+PQ+GDKF+SRHGQKGT+G+TY QED P++ EGITPD+I+NPHAIPS
Sbjct: 955  GLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHAIPS 1014

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMTIG LIEC++GKV+   G EGDATPFTDVTV+ IS+AL   GYQ RGFE MYNG TGR
Sbjct: 1015 RMTIGHLIECLLGKVSTLTGNEGDATPFTDVTVEAISQALQAQGYQQRGFEVMYNGFTGR 1074

Query: 1043 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102
            +L A +FLGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1075 KLNAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMI 1134

Query: 1103 AHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1162
            +HG + FLKERLFD SDAYRVHVC+ CGL+AIANLKKN+FECR CKNKT I Q+HIPYAC
Sbjct: 1135 SHGVAQFLKERLFDASDAYRVHVCDICGLMAIANLKKNNFECRSCKNKTRISQIHIPYAC 1194

Query: 1163 KLLFQELMAMAIAPRMLTKED 1183
            KLLFQELMAM IAPRM    D
Sbjct: 1195 KLLFQELMAMNIAPRMFVDAD 1215


>gi|384498030|gb|EIE88521.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
            99-880]
          Length = 1193

 Score = 1675 bits (4339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 790/1200 (65%), Positives = 962/1200 (80%), Gaps = 44/1200 (3%)

Query: 19   EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78
            EEE ITQED W VI ++FEEKGLVRQQLDSFDEF+QNTMQE+VDE++++ +    QH  G
Sbjct: 3    EEEPITQEDCWTVIGSFFEEKGLVRQQLDSFDEFVQNTMQELVDENSNLVL----QH-VG 57

Query: 79   QQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV-I 137
               D  +  Y I FGQIYLSKP MTE+DG +  +FP+ AR+RNLTY+APLY+D++KR  I
Sbjct: 58   GDGDVTKR-YIIDFGQIYLSKPTMTEADGSSQPMFPQEARIRNLTYAAPLYIDMSKRTQI 116

Query: 138  KKGHDG------------EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
             +  D             +E +E    TKVF+GKVP+MLRSSYC L+   EK++ +L EC
Sbjct: 117  ARPQDPNDPRTNPNDLFVDEGSEAPPKTKVFVGKVPVMLRSSYCILHDMPEKEMHDLNEC 176

Query: 186  PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
             +D GGYF+INGSEKVLIAQE+M+TN VYVF K  P  +++ AE+RS  E  ++  S +F
Sbjct: 177  SFDMGGYFVINGSEKVLIAQERMATNTVYVFSKAPPATFSFSAEIRSQPEKGSKNASPLF 236

Query: 246  VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
            ++M+ R SA+ G++GQ+IRA LPYIR+EIP++IVFRALG V+D+D+LEHICYD  D +M+
Sbjct: 237  IKMM-RPSAERGTAGQFIRAALPYIRSEIPVVIVFRALGQVSDRDVLEHICYDRNDYEML 295

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            ELL+PS+EEAFVIQ+Q VALD+IGKRG TVG TR++RIKYA EILQKE+LPHVGT    E
Sbjct: 296  ELLKPSIEEAFVIQDQDVALDFIGKRGTTVGATRERRIKYASEILQKELLPHVGTAYKTE 355

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            T+K+Y+FGY+IHRLLL AL RR  DDRDHYG KR+DLAGPL+ GLFR+LFRKLTRDV  Y
Sbjct: 356  TRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRLLFRKLTRDVAKY 415

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +QKC+++ ++ NL  A+K+ TIT+GLKYSLATGNWG Q  A   RAGVSQVLNR T+AST
Sbjct: 416  LQKCIESSREFNLSLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFAST 475

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YI+VGS+A
Sbjct: 476  LSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSSA 535

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             P++ FLEEW  EN EE+S   I  +TK+FVNG W+GIHRDP  L+ +L+++RR VD++ 
Sbjct: 536  NPLIMFLEEWAMENLEELSATSIADSTKVFVNGVWIGIHRDPGELITSLKQMRRSVDISP 595

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVA 664
            EV +VRDIR KELR+YTD GRC RPLF+VE Q+L + + D+  LQ  +  +D GW DL+A
Sbjct: 596  EVSIVRDIREKELRMYTDAGRCCRPLFLVENQQLRLTRDDVGRLQ--DPDDDFGWQDLIA 653

Query: 665  KGFIEYIDTEEEETTMISMTINDLVQARLHPEEA-------------------YADTYTH 705
            +G +EY+D +EEET MI MT  DL ++R+  +                     YA T+TH
Sbjct: 654  EGIVEYVDADEEETAMICMTPEDLSESRMASQYGAPLQQTRSLASRVKSQTGTYAHTWTH 713

Query: 706  CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 765
            CEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q RMDTLA +LYYPQ
Sbjct: 714  CEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQMRMDTLANILYYPQ 773

Query: 766  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 825
            KPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y 
Sbjct: 774  KPLTTTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYM 833

Query: 826  DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-S 884
            D EKK G +  E+F +P R +T+ ++HG+Y+KL++DGL  PGTRVSG+D+IIGKT PI +
Sbjct: 834  DAEKKAGMMFMEEFEKPTRESTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKTAPIPA 893

Query: 885  QDEAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
            + E  GQ  + + +RD S  LR +ETG+VDQV+LTTN DGL+FVKVRVRS R+PQ+GDKF
Sbjct: 894  ESEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKF 953

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            +SRHGQKGT+G+TY QED P++ EGITPD+I+NPHAIPSRMTIG +IEC++GKV+   G 
Sbjct: 954  ASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIECLLGKVSTLTGN 1013

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            EGDATPFTDVTV+ IS+AL   GYQ RGFE MYNG TGR+L A +FLGPTYYQRLKHMVD
Sbjct: 1014 EGDATPFTDVTVEAISQALQAQGYQQRGFEVMYNGFTGRKLNAQVFLGPTYYQRLKHMVD 1073

Query: 1064 DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 1123
            DKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLKERLFD SDAYRV
Sbjct: 1074 DKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAQFLKERLFDASDAYRV 1133

Query: 1124 HVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKED 1183
            HVC+ CGL+AIANLKKN+FECR CKNKT I Q+HIPYACKLLFQELMAM IAPRM    D
Sbjct: 1134 HVCDICGLMAIANLKKNNFECRSCKNKTRISQIHIPYACKLLFQELMAMNIAPRMFVDAD 1193


>gi|301101902|ref|XP_002900039.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
            infestans T30-4]
 gi|262102614|gb|EEY60666.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
            infestans T30-4]
          Length = 1202

 Score = 1669 bits (4322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 777/1174 (66%), Positives = 940/1174 (80%), Gaps = 26/1174 (2%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ++QEDAWAVIS+YFEEKGLVRQQLDSFDEFIQNTMQE+VD+S  I I PE+Q+ PGQ   
Sbjct: 27   VSQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRSIRINPEAQYAPGQAKT 86

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
              +TIY ISFGQIYLSKP MTE+DG T+ +FP  ARLRNLTYSAPLYVDV  +  +    
Sbjct: 87   NTDTIYNISFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDVVCQKYQAPSS 146

Query: 143  GE------EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 196
            G       E  +  +  K FIG VPIMLRS YC L   ++K+LTEL EC YDQGGYFIIN
Sbjct: 147  GPANLEDMEPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFIIN 206

Query: 197  GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKG 256
            GSEKVLIAQE+MS NHVY F+K   +KY++V E RS  E   RP STM+V+M  +   K 
Sbjct: 207  GSEKVLIAQERMSNNHVYCFRKNAASKYSWVCETRSHVEHGVRPTSTMYVQMYQKGGGKS 266

Query: 257  GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
              +G  IRA +PYIR +IP++I+FRALGFVAD++ILEHICYDF D ++ME  + SLEEAF
Sbjct: 267  AITGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFSDAELMERFKSSLEEAF 326

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            VIQ Q+VALD+IG+RG+ + V++  RI+YA++ILQKEMLPHVG  D  ETKKAY+ GY++
Sbjct: 327  VIQEQEVALDFIGRRGSAINVSKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVV 386

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            H+LL+C+LGR  EDDRDHYGNKRLDLAGPLLGGLFR+LF+KLT+DV++++QKCVDNGKD 
Sbjct: 387  HKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGGLFRILFKKLTKDVKSFLQKCVDNGKDF 446

Query: 437  NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            NL  AI+++TIT+GL+YSLATGNWG   +A ++AGVSQVLNRLTYAS+LSHLRRLN+P+G
Sbjct: 447  NLTLAIRSRTITNGLRYSLATGNWGMQKSA-SKAGVSQVLNRLTYASSLSHLRRLNTPLG 505

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            REGK A+PRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI+VGS   PILEFLEEW T
Sbjct: 506  REGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWAT 565

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            EN EEI P +IP +TKIFVNG WVG+HR+P  L++TLR LRR VD++ EV V+RD+  KE
Sbjct: 566  ENLEEIKPQIIPHSTKIFVNGNWVGVHREPNELIRTLRSLRRCVDIDAEVSVIRDLMNKE 625

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEE 676
            LRIYTD GR  RPLFIVE  +LL++K  ++ LQ  +   +  WH+L+  G +E IDTEEE
Sbjct: 626  LRIYTDAGRVCRPLFIVEDNQLLLQKEQVVKLQNHKI-TNYRWHNLLTDGVVELIDTEEE 684

Query: 677  ETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
            E  MI+M   D+           +  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQS
Sbjct: 685  EVCMIAMEPKDVGTG--------SQIHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 736

Query: 737  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
            AMGKQAMGIY +N++ RMDT+A VL YPQKPLVTTRAME+LHFR+LP+GINAIV IA Y+
Sbjct: 737  AMGKQAMGIYCSNFRARMDTMANVLNYPQKPLVTTRAMEYLHFRELPSGINAIVGIASYT 796

Query: 797  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK----------EDFGRPDRSN 846
            GYNQEDS+IMNQS+IDRGFFRS F+R Y D+E+                 E+F +P R N
Sbjct: 797  GYNQEDSLIMNQSAIDRGFFRSTFYRCYIDQERNKSPHGGPGGGAGGANCEEFEKPSREN 856

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRH 906
             +G+RHGSY KLD+DGL  PGTRVSG D+IIGKT+P+ Q E      R+ +RD S +LR 
Sbjct: 857  CLGLRHGSYHKLDNDGLVAPGTRVSGNDIIIGKTSPLPQSEDSSLEQRHQKRDASTALRS 916

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
             E G++D V+LTTNADG +F KVR R++R+PQIGDKF+SRHGQKGT+GMTY QEDMP+TV
Sbjct: 917  HENGIIDSVMLTTNADGFKFTKVRFRNIRVPQIGDKFASRHGQKGTIGMTYRQEDMPFTV 976

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGITPDI+VNPHAIPSRMT+G L+EC++GKV++  G EGDATPFTDVTV  I+  LH  G
Sbjct: 977  EGITPDIVVNPHAIPSRMTVGHLVECLLGKVSSQTGDEGDATPFTDVTVQAIADTLHNLG 1036

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            YQ  G E MY+GHTGRRLTA IF+GPT+YQRLKHMVDDKIHSR RGPV +LTRQP EGR+
Sbjct: 1037 YQKHGNEVMYSGHTGRRLTAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRA 1096

Query: 1087 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1146
            R+GGLR GEMERDC+I+HG+++FL +RLF  SDAYRVHVC+ CG+IAIANL+K +FECR 
Sbjct: 1097 REGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFECRT 1156

Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            C+NKT I QVHIPY+CKLLFQELMAM+IAPR+ T
Sbjct: 1157 CRNKTQISQVHIPYSCKLLFQELMAMSIAPRLFT 1190


>gi|325186944|emb|CCA21488.1| PREDICTED: hypothetical protein [Albugo laibachii Nc14]
          Length = 1234

 Score = 1659 bits (4297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 777/1174 (66%), Positives = 937/1174 (79%), Gaps = 26/1174 (2%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ++QEDAWAVIS+YFEEKGLVRQQLDSFDEFIQNTMQE+VD+S  I I PE+Q+ PGQ   
Sbjct: 55   VSQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRHIRINPEAQYTPGQAKA 114

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
              +TIY I FGQIYLSKP MTE+DG T+ +FP  ARLRNLTYSAPLYVDV  +  +    
Sbjct: 115  ATDTIYVIQFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDVVCQKFQANAT 174

Query: 143  G-EEVTETQDFTKV-----FIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 196
            G  ++ E + + +V     FIG VPIMLRS YC L   ++K+LTEL EC YDQGGYF+IN
Sbjct: 175  GPTKIEEMEPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFLIN 234

Query: 197  GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKG 256
            GSEKVLIAQE+MS NHVY F+K   +KY++V E RS  E   RP STM+V+M  R+  K 
Sbjct: 235  GSEKVLIAQERMSNNHVYCFRKSGVSKYSWVCETRSHVEHGVRPTSTMYVQMYQRSGGKS 294

Query: 257  GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
              SG  IRA +PYIR +IP++I+FRALGFVAD++ILEHICYDF D ++ME  +PSLEEAF
Sbjct: 295  AISGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAF 354

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            VIQ Q+VALD+IG+RG+ + V +  RI+YA++ILQKEMLPHVG  D  ETKKAY+ GY++
Sbjct: 355  VIQEQEVALDFIGRRGSAINVGKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVV 414

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            H+LL+C+LGR  EDDRDHYGNKRLDLAGPLLG LFR+LF+KLT+DV+ Y+QKCVDNGKD 
Sbjct: 415  HKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGSLFRILFKKLTKDVKTYLQKCVDNGKDF 474

Query: 437  NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            NL  AI+++TIT+GL+YSLATGNWG    A ++AGVSQVLNRLTYAS+LSHLRRLN+P+G
Sbjct: 475  NLTLAIRSRTITNGLRYSLATGNWGMQKTA-SKAGVSQVLNRLTYASSLSHLRRLNTPLG 533

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            REGK A+PRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI+VGS   PILEFLEEW T
Sbjct: 534  REGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWAT 593

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            EN EEI P +IP +TKIFVNG WVG+HR+P  LV+TLR LRR VD++ EV V+RD+  +E
Sbjct: 594  ENLEEIKPQIIPHSTKIFVNGNWVGVHREPNELVRTLRSLRRCVDIDAEVSVIRDLMNRE 653

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEE 676
            LRIYTD GR  RPLFIVE+ +LL++K  ++ LQ  +   +  WH+L+  G +E IDTEEE
Sbjct: 654  LRIYTDAGRVCRPLFIVEENQLLLQKEQVVKLQNHKI-TNYRWHNLLTDGVVELIDTEEE 712

Query: 677  ETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
            E  MI+M   D+              YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQS
Sbjct: 713  EVCMIAMEPKDVGLG--------TQQYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 764

Query: 737  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
            AMGKQAMG+Y +N++ RMDT+A VL YPQKPLVTTRAME LHFR+LP+GINAIV IA Y+
Sbjct: 765  AMGKQAMGVYCSNFRARMDTMANVLNYPQKPLVTTRAMEFLHFRELPSGINAIVGIASYT 824

Query: 797  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG--------TLVK--EDFGRPDRSN 846
            GYNQEDS+IMNQS+IDRG FRS F+R Y D+E+            LV   E+F +P R N
Sbjct: 825  GYNQEDSLIMNQSAIDRGLFRSTFYRCYVDQERNKSPHGGSAATALVSNCEEFEKPSRDN 884

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRH 906
             +G+RHGSY KLD DGL  PGTRVSG D+IIGKT+P+   E      R+ +RD S SLR 
Sbjct: 885  CLGLRHGSYHKLDADGLVAPGTRVSGNDIIIGKTSPLPVSEDSSLEQRHQKRDASTSLRS 944

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
             E G++D V+LTTNADG +F KVR R++RIPQIGDKF+SRHGQKGT+GMTY QEDMP+T+
Sbjct: 945  HENGIIDSVMLTTNADGFKFTKVRFRNIRIPQIGDKFASRHGQKGTIGMTYRQEDMPFTL 1004

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGITPDIIVNPHAIPSRMT+G LIEC++GKV++  G EGDATPFTDVTV  I+  LH  G
Sbjct: 1005 EGITPDIIVNPHAIPSRMTVGHLIECLLGKVSSQTGDEGDATPFTDVTVQAIADTLHNLG 1064

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            YQ  G E +Y+GHTGR LTA IF+GPT+YQRLKHMVDDKIHSR RGPV +LTRQP EGR+
Sbjct: 1065 YQRHGNEVLYSGHTGRPLTAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRA 1124

Query: 1087 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1146
            R+GGLR GEMERDC+I+HG+++FL +RLF  SDAYRVHVC+ CG+IAIANL+K +FECR 
Sbjct: 1125 REGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFECRN 1184

Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            C+NKT I Q+HIPY+CKLLFQELM+M+IAPR+ T
Sbjct: 1185 CRNKTQISQLHIPYSCKLLFQELMSMSIAPRLFT 1218


>gi|324120604|dbj|BAJ78693.1| RNA polymerase II second largest subunit [Thermobia domestica]
          Length = 1175

 Score = 1654 bits (4282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 804/1184 (67%), Positives = 948/1184 (80%), Gaps = 20/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E   +EE+ EE   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDLDEDQYEEEDGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH  G+        Y + F QIYLSKP   E DG    + P  ARLRNLT
Sbjct: 62   SPQIDLQAEAQHTSGEIE--TPPRYLLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   +GE+  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTVIK---EGEDPVETQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +  +KYAY AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKAEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKEILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTKIITDGLKYSLATGNWGDQKKAHLARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IV+  +LL+KKR I  L++RE   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVDNGKLLLKKRHIDMLKEREY-NNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QVLVASGVVEYIDTLEEETVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K     +E F
Sbjct: 771  RELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRFCDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             RP R+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +G   RYT+
Sbjct: 831  ERPTRNTCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPDNEDELEGTTKRYTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV++T N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1011 KISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPLQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ ++FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 LRNSTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120670|dbj|BAJ78726.1| RNA polymerase II second largest subunit [Eretes sticticus]
          Length = 1174

 Score = 1650 bits (4274), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 802/1183 (67%), Positives = 944/1183 (79%), Gaps = 21/1183 (1%)

Query: 8    YEEQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
            YEE+  Q EED EE   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S
Sbjct: 2    YEEEGDQYEEDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDS 61

Query: 65   ADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 124
              I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLTY
Sbjct: 62   PQIDLQAEAQHTSGEIENPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY 119

Query: 125  SAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 184
            SAPLYVD+TK ++K   DGE+  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL E
Sbjct: 120  SAPLYVDITKTIVK---DGEDPIETQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNE 175

Query: 185  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTM 244
            CP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY AE+RS  E  +RP ST+
Sbjct: 176  CPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKD-GKYAYKAEIRSCLEHSSRPTSTL 234

Query: 245  FVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDT 302
            +V M++R   + K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF+D 
Sbjct: 235  WVNMMARGGQAIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDP 294

Query: 303  QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
            +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  D
Sbjct: 295  EMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTKEKRIKYAREILQKEMLPHVGVSD 354

Query: 363  FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
            FCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++V
Sbjct: 355  FCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEV 414

Query: 423  RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTY 481
            R Y QK +D GKD NL  AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+
Sbjct: 415  RMYAQKFIDKGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTF 474

Query: 482  ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
            ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VG
Sbjct: 475  ASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVG 534

Query: 542  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
            S   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D
Sbjct: 535  SQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMD 594

Query: 602  -VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWH 660
             + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++RE   + GW 
Sbjct: 595  IIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKRHIDMLKEREY-NNYGWQ 653

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASI 720
             LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASI
Sbjct: 654  VLVASGVVEYIDTLEEETVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPAMILGVCASI 710

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR
Sbjct: 711  IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFR 770

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
            +LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F 
Sbjct: 771  ELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAESKRLGDQEEQFE 830

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRR 898
            +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE  G   RYT+R
Sbjct: 831  KPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPENDDELDGTTKRYTKR 890

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y 
Sbjct: 891  DASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYR 950

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDN 1017
            QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  
Sbjct: 951  QEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQK 1010

Query: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1077
            IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL
Sbjct: 1011 ISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1070

Query: 1078 TRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANL 1137
             RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL
Sbjct: 1071 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1130

Query: 1138 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            + N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1173


>gi|324120638|dbj|BAJ78710.1| RNA polymerase II second largest subunit [Tenodera aridifolia]
          Length = 1175

 Score = 1649 bits (4271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 802/1184 (67%), Positives = 946/1184 (79%), Gaps = 22/1184 (1%)

Query: 8    YEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YE +  Q EED+ EEI+    QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YELEEDQYEEDDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPQIDLQAEAQHTSGEIENPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK ++K   DGEE  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTIVK---DGEEPIETQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   K+AY AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q +AL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNIALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDKGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHMARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++RE   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGSLLLKKRHIDMLKEREY-NNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LVA G +EYIDT EEET MISM+ +DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QVLVASGVVEYIDTLEEETVMISMSPDDLRQDK---EYAYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI CY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +G   R+T+
Sbjct: 831  EKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELEGTTKRFTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|324120598|dbj|BAJ78690.1| RNA polymerase II second largest subunit [Pedetontus unimaculatus]
          Length = 1176

 Score = 1649 bits (4271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 798/1181 (67%), Positives = 946/1181 (80%), Gaps = 21/1181 (1%)

Query: 10   EQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            ++ Q EEED EE   ++ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  
Sbjct: 5    DEDQFEEEDAEEVSSDLWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQ 64

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            I+++ E+QH  G+  +     Y + F QIYLSKP   E DG    + P  ARLRNLTYSA
Sbjct: 65   IDLQAEAQHTSGEIENPPR--YLLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSA 122

Query: 127  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            PLYVD+TK V+K   DGE+  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP
Sbjct: 123  PLYVDITKTVVK---DGEDPIETQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECP 178

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
             D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY +E+RS  E  +RP ST++V
Sbjct: 179  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWV 237

Query: 247  RMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM 304
             ML+R   S K  S GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +M
Sbjct: 238  NMLARGGQSVKKSSVGQKIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            ME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFC
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGGRGAKPGVTKEKRIKYAREILQKEMLPHVGVSDFC 357

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR 
Sbjct: 358  ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLMKEVRM 417

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+AS
Sbjct: 418  YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 477

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS 
Sbjct: 478  TLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 537

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-V 602
              PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D +
Sbjct: 538  PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMSTLRKLRRQMDII 597

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDL 662
             +EV ++RDIR +E+RIYTD GR  RPL IVE  RLL+KKR +  L++RE   + GW DL
Sbjct: 598  VSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGRLLLKKRHVDMLKEREY-NNYGWQDL 656

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
            VA   +EYIDT EEET MI+M+++DL Q +   E AY  TYTHCEIHP++ILGVCASIIP
Sbjct: 657  VASSAVEYIDTLEEETVMIAMSLDDLRQDK---EYAYCTTYTHCEIHPAMILGVCASIIP 713

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+L
Sbjct: 714  FPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFREL 773

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+F R+Y+D E K     +E F +P
Sbjct: 774  PAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFMRAYKDSESKRVGDQEEQFEKP 833

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDH 900
             R    GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE +G   RYT+RD 
Sbjct: 834  TRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTRRYTKRDA 893

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QE
Sbjct: 894  STFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 953

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNIS 1019
            DMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V  IS
Sbjct: 954  DMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKIS 1013

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
              L + GYQ+RG E M+NGH+GR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL R
Sbjct: 1014 ALLQEYGYQLRGNEVMFNGHSGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVR 1073

Query: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK 1139
            QP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ 
Sbjct: 1074 QPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRN 1133

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1134 NTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|154707850|ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus]
 gi|73975053|ref|XP_532382.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Canis lupus familiaris]
 gi|301765482|ref|XP_002918158.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Ailuropoda melanoleuca]
 gi|410957577|ref|XP_003985402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Felis catus]
 gi|426231739|ref|XP_004009895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ovis aries]
 gi|148744083|gb|AAI42268.1| POLR2B protein [Bos taurus]
 gi|296486557|tpg|DAA28670.1| TPA: DNA directed RNA polymerase II polypeptide B [Bos taurus]
          Length = 1174

 Score = 1649 bits (4270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 799/1184 (67%), Positives = 952/1184 (80%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235  IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770  RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +G   RYT+
Sbjct: 830  EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1010 KISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|355687402|gb|EHH25986.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
          Length = 1174

 Score = 1649 bits (4270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 799/1184 (67%), Positives = 952/1184 (80%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235  IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE  +  GW
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-KTTGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770  RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+
Sbjct: 830  EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1010 KISNLLSDYGYHLRGKEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|194209129|ref|XP_001916826.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Equus caballus]
          Length = 1174

 Score = 1649 bits (4269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 799/1184 (67%), Positives = 951/1184 (80%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235  IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NLQ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRIYAQKFIDRGKDFNLQLAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770  RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+
Sbjct: 830  EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1010 KISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|324120606|dbj|BAJ78694.1| RNA polymerase II second largest subunit [Isolepisma japonica]
          Length = 1176

 Score = 1647 bits (4266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 801/1184 (67%), Positives = 946/1184 (79%), Gaps = 20/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E   +EE+ EE   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDLDEDQYEEEDGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH  G+        Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPQIDLQAEAQHTSGEIE--TPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   +GE+  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTVIK---EGEDPIETQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIVAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTKIITDGLKYSLATGNWGDQKKAHLARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV +VRDIR +E+RIYTD GR  RPL IV+  RLL+KKR I  L++RE   + GW
Sbjct: 595  DIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVDNGRLLLKKRHIDMLKEREY-NNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LVA G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QVLVASGVVEYIDTLEEETVMIAMSPEDLRQDK---EYAYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIACY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAIACYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRICDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +G   RYT+
Sbjct: 831  EKPTRTTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNDDELEGTTKRYTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV++T N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1011 KISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPLQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            ++ ++FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 MRNSTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120648|dbj|BAJ78715.1| RNA polymerase II second largest subunit [Cryptotympana facialis]
          Length = 1175

 Score = 1647 bits (4266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 800/1184 (67%), Positives = 946/1184 (79%), Gaps = 22/1184 (1%)

Query: 8    YEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YE    Q EEDE EEI+    QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YELDEDQYEEDEAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH  G+        Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPQIDLQAEAQHTSGEIE--TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK ++K   +GE+  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTIVK---EGEDPIETQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   K+AY AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++R+   + GW
Sbjct: 595  DIIVSEVSIIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDNLKERDY-NNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LV+ G +EYIDT EEETTMI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QVLVSSGVVEYIDTLEEETTMIAMSPDDLRQDK---EYAYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIACY+GYNQEDSVI+N S+++RGFFRS+FFRSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRVGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +G   RYT+
Sbjct: 831  EKPTRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTMTLPDNEDELEGTTKRYTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGI+PDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGISPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GYQ+RG E MYNGHTGR++ A IF+GPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFIGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|291401757|ref|XP_002717206.1| PREDICTED: DNA directed RNA polymerase II polypeptide B [Oryctolagus
            cuniculus]
          Length = 1174

 Score = 1647 bits (4265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 799/1184 (67%), Positives = 951/1184 (80%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235  IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770  RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+
Sbjct: 830  EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L   GY +RG E +YNG TGR++T+ IFLGPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1010 KISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPIQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|4505941|ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]
 gi|157822127|ref|NP_001099472.1| DNA-directed RNA polymerase II subunit RPB2 [Rattus norvegicus]
 gi|387849108|ref|NP_001248426.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|114594586|ref|XP_517275.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Pan
            troglodytes]
 gi|296196473|ref|XP_002745851.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Callithrix
            jacchus]
 gi|297673513|ref|XP_002814803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 4
            [Pongo abelii]
 gi|332238537|ref|XP_003268457.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nomascus
            leucogenys]
 gi|348571889|ref|XP_003471727.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cavia
            porcellus]
 gi|354498860|ref|XP_003511530.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Cricetulus griseus]
 gi|395851369|ref|XP_003798233.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Otolemur garnettii]
 gi|402869719|ref|XP_003898895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Papio anubis]
 gi|401012|sp|P30876.1|RPB2_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
            AltName: Full=DNA-directed RNA polymerase II subunit B;
            AltName: Full=RNA polymerase II subunit 2; AltName:
            Full=RNA polymerase II subunit B2
 gi|36122|emb|CAA45124.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
 gi|254869|gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
            largest subunit [human, HeLa cells, Peptide, 1174 aa]
 gi|33870592|gb|AAH23503.2| Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
            sapiens]
 gi|119625924|gb|EAX05519.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
            sapiens]
 gi|149035168|gb|EDL89872.1| polymerase (RNA) II (DNA directed) polypeptide B (predicted) [Rattus
            norvegicus]
 gi|158260669|dbj|BAF82512.1| unnamed protein product [Homo sapiens]
 gi|168277428|dbj|BAG10692.1| DNA-directed RNA polymerase II subunit RPB2 [synthetic construct]
 gi|355749385|gb|EHH53784.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca fascicularis]
 gi|380783295|gb|AFE63523.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|383413177|gb|AFH29802.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|384941246|gb|AFI34228.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|410224966|gb|JAA09702.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410261216|gb|JAA18574.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306896|gb|JAA32048.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306898|gb|JAA32049.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306900|gb|JAA32050.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410350135|gb|JAA41671.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
          Length = 1174

 Score = 1647 bits (4265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 798/1184 (67%), Positives = 951/1184 (80%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235  IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770  RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+
Sbjct: 830  EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1010 KISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|324120622|dbj|BAJ78702.1| RNA polymerase II second largest subunit [Karoophasma biedouwense]
          Length = 1176

 Score = 1647 bits (4265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 801/1184 (67%), Positives = 943/1184 (79%), Gaps = 22/1184 (1%)

Query: 8    YEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YE    Q EED+ EEI+    QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YEIDEDQYEEDDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPQIDLQAEAQHTSGEIENPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK ++K   DGEE  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTIVK---DGEEPIETQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   K+AY AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIIAVLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++RE   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDMLKEREY-NNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LVA G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QVLVASGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI CY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +G   R+T+
Sbjct: 831  EKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPENDDELEGTTKRFTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GY +RG E MYNGHTGR+++A IFLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISTLLQEYGYHLRGNEVMYNGHTGRKISAQIFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|226958589|ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]
 gi|51702009|sp|Q8CFI7.2|RPB2_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
            AltName: Full=DNA-directed RNA polymerase II subunit B;
            AltName: Full=RNA polymerase II subunit 2; AltName:
            Full=RNA polymerase II subunit B2
 gi|148705989|gb|EDL37936.1| polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1174

 Score = 1645 bits (4261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 797/1184 (67%), Positives = 951/1184 (80%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235  IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770  RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  Y+KLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+
Sbjct: 830  EKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1010 KISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|324120608|dbj|BAJ78695.1| RNA polymerase II second largest subunit [Epiophlebia superstes]
          Length = 1175

 Score = 1645 bits (4260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 798/1184 (67%), Positives = 946/1184 (79%), Gaps = 22/1184 (1%)

Query: 8    YEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YE   +Q EED+ EEI+    QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YELDEEQYEEDDGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPQIDLQAEAQHTSGEIENPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK V K   +GEE  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTVAK---EGEEPIETQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   K+A+ AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAFKAEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSRT--SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARCGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KR+KYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRVKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++RE   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKRHIEMLKEREY-NNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LVA G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QVLVASGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCSTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+F+RSY+D+E K     +E F
Sbjct: 771  RELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYKDQESKRVGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +G   R+T+
Sbjct: 831  EKPTRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPENDDELEGTTKRFTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV++T N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISSLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|126331583|ref|XP_001362455.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Monodelphis
            domestica]
 gi|395542735|ref|XP_003773281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sarcophilus
            harrisii]
          Length = 1174

 Score = 1645 bits (4259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 797/1184 (67%), Positives = 951/1184 (80%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHATGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235  IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770  RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+
Sbjct: 830  EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1010 KISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|198418494|ref|XP_002128916.1| PREDICTED: similar to POLR2B protein [Ciona intestinalis]
          Length = 1173

 Score = 1644 bits (4258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 799/1166 (68%), Positives = 930/1166 (79%), Gaps = 20/1166 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  IE++ ESQH   + S
Sbjct: 20   EMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPIIELQAESQHTSTEVS 79

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
                T Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK V+K  H
Sbjct: 80   --VPTKYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVK--H 135

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            + + V ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKV
Sbjct: 136  EAQPV-ETQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKV 193

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVFKK+  +KYA+ +E+RS  E+ +RP S+M+V ML+R     K  + 
Sbjct: 194  LIAQEKMATNTVYVFKKKD-SKYAFTSEIRSSLENSSRPTSSMWVNMLARGGQGVKKSAI 252

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A +PYIR EIPIIIVFRALGFV+D+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 253  GQRITAIIPYIRQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 312

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 313  EQNVALNFIGSRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRL 372

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            L  ALGRR  DDRDHYGNKRLDLAGPLL  LFR LFR L ++VR Y QK +D GKD NL+
Sbjct: 373  LSAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRLYAQKFIDRGKDFNLE 432

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK + IT GLKYSLATGNWG Q  A   RAGVSQVLNRLTYASTLSHLRRLNSPIGR+
Sbjct: 433  LAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSHLRRLNSPIGRD 492

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHNS WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 493  GKLAKPRQLHNSLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 552

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEISP+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV +VRDIR +E+
Sbjct: 553  LEEISPSAIANATKIFVNGCWVGIHRDPEQLMNTLRKLRRQMDIIVSEVSMVRDIREREI 612

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE Q+LL+K R I  L  +E      W DLVA G +EYID  EEE
Sbjct: 613  RIYTDAGRICRPLLIVENQKLLLKTRHIDQL--KEDYNSYSWQDLVASGVVEYIDPLEEE 670

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T M++M   DL        E Y  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 671  TIMLAMFPEDLQDK----GEQYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 726

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGINAIVAI+ Y+G
Sbjct: 727  MGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAISTYTG 786

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDS+I+N+SS+DRGFFRS+F+RSY+D E K     +E F RP+RS   GMRH  YDK
Sbjct: 787  YNQEDSIIVNKSSVDRGFFRSVFYRSYKDAENKSAYDQEETFERPERSFCTGMRHAIYDK 846

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDGL  PG RVSG+DV+IGKT   P ++DE +G   R+ +RD S  LR SETG+VDQV
Sbjct: 847  LDDDGLVSPGIRVSGDDVVIGKTVMLPENEDELEGTTQRFKKRDVSTFLRTSETGIVDQV 906

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +++ N DG +F K+RVRSVR+PQIGDKF+SRHGQKGT G+TY  EDMP+T EG+ PD+IV
Sbjct: 907  MISINQDGYKFTKIRVRSVRVPQIGDKFASRHGQKGTCGITYRAEDMPFTSEGVQPDLIV 966

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  IS  LH+ GYQ RG E 
Sbjct: 967  NPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDTVNVQKISNLLHEYGYQQRGNEV 1026

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            +YNGHTGR+L   +F GPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGRSRDGGLRFG
Sbjct: 1027 LYNGHTGRKLNTQVFFGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFG 1086

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC IAHGA+ FL+ERLF+ SD YRVHVC  CGLIAIANL+ ++FECRGCKNKT I 
Sbjct: 1087 EMERDCQIAHGAAQFLRERLFEASDPYRVHVCNLCGLIAIANLRSHTFECRGCKNKTHIS 1146

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
            QV +PYACKLLFQELM+M+IAPRM+ 
Sbjct: 1147 QVRMPYACKLLFQELMSMSIAPRMMV 1172


>gi|156538773|ref|XP_001607902.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nasonia
            vitripennis]
          Length = 1175

 Score = 1644 bits (4256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/1183 (67%), Positives = 948/1183 (80%), Gaps = 20/1183 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            Y  EE+H ++++ EE   ++ QE  W VI+AYF+EKGLVRQQLDSFDEFI+ ++Q IV+E
Sbjct: 2    YALEEEHYEDDDSEEISSKVWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEE 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH  G       T + + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPQIDLQAEAQHRTGDIE--TPTRHLVKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   +GEE TETQ   K FIGK+PIMLRS YC L   S++DLTEL 
Sbjct: 120  YSAPLYVDITKTVIK---EGEEPTETQ-HQKTFIGKIPIMLRSKYCLLAGLSDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSIKD-GKYAYKAEIRSCLEHSSRPVST 234

Query: 244  MFVRMLSRTSA--KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            +++ M+S++ A  K  + GQ I A LPYIR EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWINMMSKSGAAIKKSAIGQRIIAILPYIRQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RIKYA+EILQKE LPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGARPGVTKERRIKYAREILQKETLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLA+PRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLARPRQLHNTLWGMLCPAETPEGQAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV +VRDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R+   D GW
Sbjct: 595  DIIVSEVSMVRDIRDREIRIYTDAGRISRPLLIVENQLLLLKKRHIEMLKERDYNND-GW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             +LV++G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QELVSQGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI CY+GYNQEDS+I+N S+++RGFFRS+F+RSY+D E K    V+E F
Sbjct: 771  RELPAGINSIVAILCYTGYNQEDSIILNTSAVERGFFRSVFYRSYKDSETKRLGDVEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P+R    GMR+  YDKLD+DG+  PG RVSG+DVIIGKT   P + D+      R+T+
Sbjct: 831  EKPNRQTCQGMRNAIYDKLDEDGIISPGIRVSGDDVIIGKTMTLPETDDDLDSSTKRFTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGMTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISTLLMEYGYQLRGNEIMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLM 1173


>gi|324120612|dbj|BAJ78697.1| RNA polymerase II second largest subunit [Ephemera japonica]
          Length = 1179

 Score = 1644 bits (4256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 797/1190 (66%), Positives = 948/1190 (79%), Gaps = 21/1190 (1%)

Query: 2    MEDDYDYEEQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQ 58
            M+  YD +E+   ++ED+EE   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q
Sbjct: 1    MDRTYDMDEEPLDDQEDKEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQ 60

Query: 59   EIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 118
             IV++S  I+++ E+QH  G+    +   Y + F QIYLSKP   E DG    + P  AR
Sbjct: 61   RIVEDSPQIDLQAEAQHTSGEIE--SPPKYFLKFEQIYLSKPTHWEKDGAPTPMMPNEAR 118

Query: 119  LRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKD 178
            LRNLTYSAPLYVD+TK V+K   DGE   ETQ   K FIGK+PIMLRS+YC L   S++D
Sbjct: 119  LRNLTYSAPLYVDITKLVVK---DGENTVETQ-HQKTFIGKIPIMLRSTYCLLSGLSDRD 174

Query: 179  LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQN 238
            LTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   K+AY AE+RS  E  +
Sbjct: 175  LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKD-GKFAYKAEIRSCQEHSS 233

Query: 239  RPPSTMFVRMLSRT--SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC 296
            RP ST++V M++R+  S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI 
Sbjct: 234  RPTSTLWVNMMARSGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHII 293

Query: 297  YDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLP 356
            YDF D +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLP
Sbjct: 294  YDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLP 353

Query: 357  HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR 416
            HVG  DFCETKKAY+ GY++HRLLL AL RR  DDRDHYGNKRLDLAGPLL  LFR LF+
Sbjct: 354  HVGVSDFCETKKAYFLGYMVHRLLLAALSRRELDDRDHYGNKRLDLAGPLLAFLFRGLFK 413

Query: 417  KLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQV 475
             L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQV
Sbjct: 414  NLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQV 473

Query: 476  LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 535
            LNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM
Sbjct: 474  LNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALM 533

Query: 536  VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 595
             YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+
Sbjct: 534  AYISVGSQPSPILEFLEEWSMENLEEIAPSAILDATKIFVNGCWVGIHRDPEQLMSTLRK 593

Query: 596  LRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESP 654
            LRR++D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  I  L+ R+  
Sbjct: 594  LRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKVHIDMLKDRDY- 652

Query: 655  EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLIL 714
             + GW  LV+ G +EYIDT EEET MI+M+ +DL   +   E AY  TYTHCEIHP++IL
Sbjct: 653  NNYGWQFLVSSGVVEYIDTLEEETVMIAMSPDDLNHEK---EYAYCTTYTHCEIHPAMIL 709

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            GVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+M
Sbjct: 710  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSM 769

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E+L FR+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+F+RSY+D+E K    
Sbjct: 770  EYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSIFYRSYKDQESKKIGD 829

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQA 892
             +E F +P+R+   GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE +G  
Sbjct: 830  QEEQFEKPNRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVIIGKTITLPENDDELEGST 889

Query: 893  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
             +Y +RD S  LR+SETG+VDQV++T N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 890  KKYVKRDASTFLRNSETGIVDQVMITLNSEGYKFSKIRVRSVRIPQIGDKFASRHGQKGT 949

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
             G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D
Sbjct: 950  CGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFND 1009

Query: 1013 -VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
             V V  IS  L + GY +RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR R
Sbjct: 1010 AVNVQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRAR 1069

Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
            GPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGL
Sbjct: 1070 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 1129

Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            IAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ +
Sbjct: 1130 IAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVE 1179


>gi|324120628|dbj|BAJ78705.1| RNA polymerase II second largest subunit [Teleogryllus emma]
          Length = 1174

 Score = 1643 bits (4255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 797/1166 (68%), Positives = 936/1166 (80%), Gaps = 18/1166 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+  
Sbjct: 19   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIE 78

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK +IK   
Sbjct: 79   NPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 133

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            DGEE  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKV
Sbjct: 134  DGEEPIETQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV 192

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF  +   KYAY AE+RS  E  +RP ST++V M++R   S K  + 
Sbjct: 193  LIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAI 251

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 252  GQRIIAVLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 311

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 312  EQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 371

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL+
Sbjct: 372  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLE 431

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 432  LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 491

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 492  GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 551

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 552  LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREI 611

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE   LL+KKR I  L++RE   + GW  LVA G +EYIDT EEE
Sbjct: 612  RIYTDAGRICRPLLIVENGNLLLKKRHIDMLKEREY-NNFGWQVLVASGVVEYIDTLEEE 670

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 671  TVMIAMSPDDLRQEK---EYAYCMTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 727

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+G
Sbjct: 728  MGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTG 787

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMN S+++RGFFRS+FFRSY+D E K     +E F +P R    GMR+  YDK
Sbjct: 788  YNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDK 847

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDG+  PG RVSG+DV+IGKT   P ++DE +G   RYT+RD S  LR+SETG+VDQV
Sbjct: 848  LDDDGIISPGIRVSGDDVVIGKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQV 907

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+
Sbjct: 908  MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIII 967

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V  IS  L + GYQ+RG E 
Sbjct: 968  NPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEV 1027

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFG
Sbjct: 1028 MYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1087

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKNKT I 
Sbjct: 1088 EMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQIS 1147

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
            QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1148 QVRLPYAAKLLFQELMAMNIAPRLMV 1173


>gi|224049409|ref|XP_002192218.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Taeniopygia
            guttata]
          Length = 1174

 Score = 1643 bits (4254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/1184 (67%), Positives = 951/1184 (80%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   +GE+  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTVIK---EGEDQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235  IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770  RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    R+T+
Sbjct: 830  EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1010 KISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|440903358|gb|ELR54029.1| DNA-directed RNA polymerase II subunit RPB2 [Bos grunniens mutus]
          Length = 1175

 Score = 1643 bits (4254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 796/1177 (67%), Positives = 948/1177 (80%), Gaps = 21/1177 (1%)

Query: 13   QQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70
            Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++
Sbjct: 10   QYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQ 69

Query: 71   PESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
             E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYV
Sbjct: 70   AEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 127

Query: 131  DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
            D+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D G
Sbjct: 128  DITKTVIK---EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPG 183

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+
Sbjct: 184  GYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLA 242

Query: 251  R--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
            R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME++
Sbjct: 243  RGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMV 302

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            +PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKK
Sbjct: 303  KPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKK 362

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            AY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK
Sbjct: 363  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQK 422

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 487
             +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSH
Sbjct: 423  FIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSH 482

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PI
Sbjct: 483  LRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPI 542

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEV 606
            LEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV
Sbjct: 543  LEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEV 602

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
             ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G
Sbjct: 603  SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASG 661

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDH
Sbjct: 662  VVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDH 717

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGI
Sbjct: 718  NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 777

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            N+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R  
Sbjct: 778  NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRET 837

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISL 904
              GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +G   RYT+RD S  L
Sbjct: 838  CQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFL 897

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+
Sbjct: 898  RTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 957

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALH 1023
            T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L 
Sbjct: 958  TCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLS 1017

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
              GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP E
Sbjct: 1018 DYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPME 1077

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE 1143
            GRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++E
Sbjct: 1078 GRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYE 1137

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1138 CRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1174


>gi|324120610|dbj|BAJ78696.1| RNA polymerase II second largest subunit [Mnais pruinosa pruinosa]
          Length = 1175

 Score = 1643 bits (4254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 796/1184 (67%), Positives = 946/1184 (79%), Gaps = 22/1184 (1%)

Query: 8    YEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YE   +Q EED+ EEI+    QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YELDEEQYEEDDGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPQIDLQAEAQHTSGEIENPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK V K   +GEE  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTVAK---EGEEPIETQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   K+A+ AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAFKAEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KR+KYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRVKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L++RE   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKRHIEMLKEREY-NNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LVA G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QVLVASGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+F+RSY+D+E K     +E F
Sbjct: 771  RELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYKDQESKRVGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +G   R+T+
Sbjct: 831  EKPTRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPENDDELEGTTKRFTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV++T N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GYQ+RG E M+NGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISSLLQEYGYQLRGNEVMFNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120630|dbj|BAJ78706.1| RNA polymerase II second largest subunit [Oyamia lugubris]
          Length = 1175

 Score = 1642 bits (4253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 796/1184 (67%), Positives = 944/1184 (79%), Gaps = 22/1184 (1%)

Query: 8    YEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YE      EED+ EEI+    QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YEVDEDNFEEDDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPQIDLQAEAQHTSGEIENPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK ++K   DGEE  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTIVK---DGEEPIETQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   K+AY AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR +  L++RE   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGNLLLKKRHVDMLKEREY-NNFGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QVLVASGVVEYIDTLEEETVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAESKRIGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +G   RYT+
Sbjct: 831  EKPTRATCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNEDELEGTTKRYTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDM +T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 951  RQEDMAFTAEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120640|dbj|BAJ78711.1| RNA polymerase II second largest subunit [Blattella nipponica]
          Length = 1175

 Score = 1642 bits (4253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 797/1184 (67%), Positives = 943/1184 (79%), Gaps = 22/1184 (1%)

Query: 8    YEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            Y+    Q EED+ EEI+    QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDADEDQYEEDDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPQIDLQAEAQHTSGEIENPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK ++K   DGE+  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTIVK---DGEDPIETQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   K+AY AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+D+RIKYAKEILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKDRRIKYAKEILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHLARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR +  L+++E   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGTLLLKKRHVDMLKEKEY-NNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LVA G +EYIDT EEET MI+M+  DL   R+  E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QVLVASGVVEYIDTLEEETVMIAMSPEDL---RVDKEYAYCQTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI CY+GYNQEDSVIMN S+++RGFFRS+FFRSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +G   R+T+
Sbjct: 831  EKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNDDELEGTTKRFTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y +HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYAIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M+IAPR++ 
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMSIAPRLMV 1174


>gi|324120626|dbj|BAJ78704.1| RNA polymerase II second largest subunit [Euconocephalus varius]
          Length = 1175

 Score = 1642 bits (4252), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 801/1184 (67%), Positives = 944/1184 (79%), Gaps = 22/1184 (1%)

Query: 8    YEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YE    Q EED+ EEI+    QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YEIDEDQYEEDDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPQIDLQAEAQHISGEIENPPH--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK + K   +GEE  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTIEK---EGEEPIETQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGARPGVTKEKRIKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKTLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHMARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHNS WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK+ I  L++RE   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGSLLLKKKHIDMLKEREY-NNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QVLVASGVVEYIDTLEEETVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+FFRSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRIGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +G   R+T+
Sbjct: 831  EKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTIMLPETEDELEGTTKRFTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|335293559|ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa]
          Length = 1167

 Score = 1642 bits (4252), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 796/1177 (67%), Positives = 948/1177 (80%), Gaps = 21/1177 (1%)

Query: 13   QQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70
            Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++
Sbjct: 2    QYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQ 61

Query: 71   PESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
             E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYV
Sbjct: 62   AEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 119

Query: 131  DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
            D+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D G
Sbjct: 120  DITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPG 175

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+
Sbjct: 176  GYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLA 234

Query: 251  R--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
            R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME++
Sbjct: 235  RGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMV 294

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            +PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKK
Sbjct: 295  KPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKK 354

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            AY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK
Sbjct: 355  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQK 414

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 487
             +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSH
Sbjct: 415  FIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSH 474

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PI
Sbjct: 475  LRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPI 534

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEV 606
            LEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV
Sbjct: 535  LEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEV 594

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
             ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G
Sbjct: 595  SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASG 653

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDH
Sbjct: 654  VVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDH 709

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGI
Sbjct: 710  NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 769

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            N+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R  
Sbjct: 770  NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRET 829

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISL 904
              GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +G   RYT+RD S  L
Sbjct: 830  CQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFL 889

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+
Sbjct: 890  RTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 949

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALH 1023
            T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L 
Sbjct: 950  TCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLS 1009

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
              GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP E
Sbjct: 1010 DYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPME 1069

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE 1143
            GRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++E
Sbjct: 1070 GRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYE 1129

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 CRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1166


>gi|281352499|gb|EFB28083.1| hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
          Length = 1168

 Score = 1642 bits (4252), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 796/1177 (67%), Positives = 948/1177 (80%), Gaps = 21/1177 (1%)

Query: 13   QQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70
            Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++
Sbjct: 3    QYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQ 62

Query: 71   PESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
             E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYV
Sbjct: 63   AEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 120

Query: 131  DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
            D+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D G
Sbjct: 121  DITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPG 176

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+
Sbjct: 177  GYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLA 235

Query: 251  R--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
            R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME++
Sbjct: 236  RGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMV 295

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            +PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKK
Sbjct: 296  KPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKK 355

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            AY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK
Sbjct: 356  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQK 415

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 487
             +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSH
Sbjct: 416  FIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSH 475

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PI
Sbjct: 476  LRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPI 535

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEV 606
            LEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV
Sbjct: 536  LEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEV 595

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
             ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G
Sbjct: 596  SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASG 654

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDH
Sbjct: 655  VVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDH 710

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGI
Sbjct: 711  NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 770

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            N+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R  
Sbjct: 771  NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRET 830

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISL 904
              GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +G   RYT+RD S  L
Sbjct: 831  CQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFL 890

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+
Sbjct: 891  RTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 950

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALH 1023
            T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L 
Sbjct: 951  TCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLS 1010

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
              GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP E
Sbjct: 1011 DYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPME 1070

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE 1143
            GRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++E
Sbjct: 1071 GRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYE 1130

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1131 CRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1167


>gi|324120674|dbj|BAJ78728.1| RNA polymerase II second largest subunit [Papilio polytes]
          Length = 1176

 Score = 1642 bits (4251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 793/1184 (66%), Positives = 945/1184 (79%), Gaps = 20/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD E+   +EE++EE   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDTEDDQFEEEDNEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  IE++ E+QH+ G+     +  Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPPIELQAEAQHSSGEIETPPK--YLLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK ++K   + EE  ETQ   K+FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTIVK---ENEEPIETQ-HQKIFIGKIPIMLRSTYCLLSNLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY  E+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKTEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A +PYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RIKYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK+ I  L++R+   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGALLLKKKHIDHLKERDY-NNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             +LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QNLVASGVVEYIDTLEEETVMIAMSPDDLAQVK---EYAYCSTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRLGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +G   RYT+
Sbjct: 831  EKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTRRYTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMVTLNREGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIECI GKV+++ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISSLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|348676682|gb|EGZ16499.1| hypothetical protein PHYSODRAFT_262616 [Phytophthora sojae]
          Length = 1171

 Score = 1642 bits (4251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 767/1159 (66%), Positives = 927/1159 (79%), Gaps = 30/1159 (2%)

Query: 32   ISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKIS 91
            ++A   EKGLVRQQLDSFDEFIQNTMQE+VD+S  I I PE+Q+ PGQ     +TIY IS
Sbjct: 21   LAAGSAEKGLVRQQLDSFDEFIQNTMQELVDDSRSIRINPEAQYAPGQAKANTDTIYNIS 80

Query: 92   FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQD 151
            FGQIYLSKP MTE+DG T+ +FP  ARLRNLTYSAPLYVDV         D  +  ET  
Sbjct: 81   FGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDVDM-------DPYDQVET-- 131

Query: 152  FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTN 211
              K FIG VPIMLRS YC L   ++K+LTEL EC YDQGGYFIINGSEKVLIAQE+MS N
Sbjct: 132  -PKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFIINGSEKVLIAQERMSNN 190

Query: 212  HVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIR 271
            HVY F+K   +KY++V E RS  E   RP STM+V+M  ++  K   +G  IRA +PYIR
Sbjct: 191  HVYCFRKNAASKYSWVCETRSHVEHGVRPTSTMYVQMYQKSGGKSAITGNQIRAVIPYIR 250

Query: 272  TEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKR 331
             +IP++I+FRALGFVAD++ILEHICYDF D ++ME  + SLEEAFVIQ Q+VALD+IG+R
Sbjct: 251  QDIPVVIIFRALGFVADREILEHICYDFSDAELMERFKSSLEEAFVIQEQEVALDFIGRR 310

Query: 332  GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDD 391
            G+ + V++  RI+YA++ILQKEMLPHVG  D  ETKKAY+ GY++H+LL+C+LGR  EDD
Sbjct: 311  GSAINVSKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDD 370

Query: 392  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGL 451
            RDHYGNKRLDLAGPLLGGLFR+LF+KLT+DV++++QKCVDNGKD NL  AI+++TIT+GL
Sbjct: 371  RDHYGNKRLDLAGPLLGGLFRILFKKLTKDVKSFLQKCVDNGKDFNLTLAIRSRTITNGL 430

Query: 452  KYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            +YSLATGNWG   +A ++AGVSQVLNRLTYAS+LSHLRRLN+P+GREGK A+PRQLHN+ 
Sbjct: 431  RYSLATGNWGMQKSA-SKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAQPRQLHNTH 489

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQA GLVKNLALM YI+VGS   PILEFLEEW TEN EEI P +IP +T
Sbjct: 490  WGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWATENLEEIKPQIIPHST 549

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNG WVG+HR+P  L++TLR LRR VD++ EV V+RD+  KELRIYTD GR  RPLF
Sbjct: 550  KIFVNGNWVGVHREPNELIRTLRSLRRCVDIDAEVSVIRDLMNKELRIYTDAGRVCRPLF 609

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVE  +LL++K  ++ LQ  +   +  WH+L+  G +E IDTEEEE  MI+M   D+   
Sbjct: 610  IVEDNQLLLQKEQVVKLQNHKI-TNYRWHNLLTDGVVELIDTEEEEVCMIAMEPKDVGTG 668

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
                    +  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY +N++
Sbjct: 669  --------SQIHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYCSNFR 720

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDT+A VL YPQKPLVTTRAME+LHFR+LP+GINAIV IA Y+GYNQEDS+IMNQS+I
Sbjct: 721  ARMDTMANVLNYPQKPLVTTRAMEYLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAI 780

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVK----------EDFGRPDRSNTMGMRHGSYDKLDDD 861
            DRGFFRS F+R Y D+E+                 E+F +P R N +G+RHGSY KLD+D
Sbjct: 781  DRGFFRSTFYRCYIDQERNKSPHGGPGGGAGGANCEEFEKPSRENCLGLRHGSYHKLDND 840

Query: 862  GLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
            GL  PGTRVSG D+IIGKT+P+ Q E      R+ +RD S +LR  E G++D V+LTTNA
Sbjct: 841  GLVAPGTRVSGNDIIIGKTSPLPQSEDSSLEQRHQKRDASTALRSHENGIIDSVMLTTNA 900

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            DG +F KVR R++R+PQIGDKF+SRHGQKGT+GMTY QEDMP+TVEGITPDI+VNPHAIP
Sbjct: 901  DGFKFTKVRFRNIRVPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGITPDIVVNPHAIP 960

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMT+G L+EC++GKV++  G EGDATPFTDVTV  I+  LH  GYQ  G E MY+GHTG
Sbjct: 961  SRMTVGHLVECLLGKVSSQTGDEGDATPFTDVTVQAIADTLHNLGYQKHGNEVMYSGHTG 1020

Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
            RRLTA IF+GPT+YQRLKHMVDDKIHSR RGPV +LTRQP EGR+R+GGLR GEMERDC+
Sbjct: 1021 RRLTAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCL 1080

Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYA 1161
            I+HG+++FL +RLF  SDAYRVHVC+ CG+IAIANL+K +FECR C+NKT I QVHIPY+
Sbjct: 1081 ISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFECRTCRNKTQISQVHIPYS 1140

Query: 1162 CKLLFQELMAMAIAPRMLT 1180
            CKLLFQELMAM+IAPR+ T
Sbjct: 1141 CKLLFQELMAMSIAPRLFT 1159


>gi|327279896|ref|XP_003224691.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Anolis
            carolinensis]
          Length = 1174

 Score = 1642 bits (4251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 794/1184 (67%), Positives = 951/1184 (80%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHATGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK V+K   +GE+  +TQ   K FIGK+PIMLRS+YC L   +++DL +L 
Sbjct: 120  YSAPLYVDITKTVVK---EGEDQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCQLN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235  IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGI----AYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770  RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+
Sbjct: 830  EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR SETG+VDQV++T N +G +F K++VRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIKVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1010 KISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CGL+AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|194379208|dbj|BAG58155.1| unnamed protein product [Homo sapiens]
          Length = 1167

 Score = 1641 bits (4249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/1177 (67%), Positives = 947/1177 (80%), Gaps = 21/1177 (1%)

Query: 13   QQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70
            Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++
Sbjct: 2    QYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQ 61

Query: 71   PESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
             E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYV
Sbjct: 62   AEAQHASGEVEEPPR--YLLKFEQIYLSKPTHRERDGAPSPMMPNEARLRNLTYSAPLYV 119

Query: 131  DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
            D+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D G
Sbjct: 120  DITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPG 175

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+
Sbjct: 176  GYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLA 234

Query: 251  R--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
            R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME++
Sbjct: 235  RGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMV 294

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            +PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKK
Sbjct: 295  KPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKK 354

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            AY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK
Sbjct: 355  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQK 414

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 487
             +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSH
Sbjct: 415  FIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSH 474

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PI
Sbjct: 475  LRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPI 534

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEV 606
            LEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV
Sbjct: 535  LEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEV 594

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
             ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G
Sbjct: 595  SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASG 653

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDH
Sbjct: 654  VVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDH 709

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGI
Sbjct: 710  NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 769

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            N+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R  
Sbjct: 770  NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRET 829

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISL 904
              GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+RD S  L
Sbjct: 830  CQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFL 889

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+
Sbjct: 890  RTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 949

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALH 1023
            T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L 
Sbjct: 950  TCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLS 1009

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
              GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP E
Sbjct: 1010 DYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPME 1069

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE 1143
            GRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++E
Sbjct: 1070 GRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYE 1129

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 CRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1166


>gi|297673503|ref|XP_002814800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Pongo abelii]
 gi|410038417|ref|XP_003950400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
            troglodytes]
          Length = 1167

 Score = 1640 bits (4248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/1177 (67%), Positives = 947/1177 (80%), Gaps = 21/1177 (1%)

Query: 13   QQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70
            Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++
Sbjct: 2    QYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQ 61

Query: 71   PESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
             E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYV
Sbjct: 62   AEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 119

Query: 131  DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
            D+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D G
Sbjct: 120  DITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPG 175

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+
Sbjct: 176  GYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLA 234

Query: 251  R--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
            R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME++
Sbjct: 235  RGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMV 294

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            +PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKK
Sbjct: 295  KPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKK 354

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            AY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK
Sbjct: 355  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQK 414

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 487
             +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSH
Sbjct: 415  FIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSH 474

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PI
Sbjct: 475  LRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPI 534

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEV 606
            LEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV
Sbjct: 535  LEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEV 594

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
             ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G
Sbjct: 595  SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASG 653

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDH
Sbjct: 654  VVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDH 709

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGI
Sbjct: 710  NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 769

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            N+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R  
Sbjct: 770  NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRET 829

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISL 904
              GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+RD S  L
Sbjct: 830  CQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFL 889

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+
Sbjct: 890  RTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 949

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALH 1023
            T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L 
Sbjct: 950  TCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLS 1009

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
              GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP E
Sbjct: 1010 DYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPME 1069

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE 1143
            GRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++E
Sbjct: 1070 GRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYE 1129

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 CRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1166


>gi|324120600|dbj|BAJ78691.1| RNA polymerase II second largest subunit [Petrobiellus takunagae]
          Length = 1151

 Score = 1640 bits (4248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 790/1160 (68%), Positives = 933/1160 (80%), Gaps = 18/1160 (1%)

Query: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
             W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+  +     
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPR-- 58

Query: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
            Y + F QIYLSKP   E DG    + P  ARLRNLTYSAPLYVD+TK V+K   DGE+  
Sbjct: 59   YLLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKTVVK---DGEDPI 115

Query: 148  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
            ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 116  ETQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 174

Query: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRA 265
            M+TN VYVF  +   KYAY +E+RS  E  +RP ST++V ML+R   S K  S GQ I A
Sbjct: 175  MATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWVNMLARGGQSVKKSSVGQKIIA 233

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
             LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL
Sbjct: 234  ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 293

Query: 326  DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 385
            ++IG RGA  GVTR+KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRLLL ALG
Sbjct: 294  NFIGGRGAKPGVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 353

Query: 386  RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
            RR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK +D GKD NL+ AIK K
Sbjct: 354  RRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLMKEVRMYAQKFIDRGKDFNLELAIKTK 413

Query: 446  TITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
             IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKP
Sbjct: 414  IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 473

Query: 505  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 564
            RQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN EEI+P
Sbjct: 474  RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 533

Query: 565  AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDY 623
            + I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+RIYTD 
Sbjct: 534  SAIADATKIFVNGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDA 593

Query: 624  GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISM 683
            GR  RPL IVE  RLL+KKR +  L++RE   + GW DLVA   +EYIDT EEET MI+M
Sbjct: 594  GRICRPLLIVENGRLLLKKRHVDMLKEREY-NNYGWQDLVASSAVEYIDTLEEETVMIAM 652

Query: 684  TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
            +++DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 653  SLDDLRQDK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 709

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN++VAIACY+GYNQEDS
Sbjct: 710  GVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDS 769

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            VIMN S+++RGFFRS+F R+Y+D E K     +E F +P R    GMR+  YDKLDDDG+
Sbjct: 770  VIMNASAVERGFFRSVFMRAYKDSESKRVGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGI 829

Query: 864  APPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG+DVIIGKT   P + DE +G   RYT+RD S  LR+SETG+VDQV+LT N+
Sbjct: 830  IAPGIRVSGDDVIIGKTITLPENDDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNS 889

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+NPHAIP
Sbjct: 890  EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIP 949

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHT 1040
            SRMTIG LIEC+ GKV+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGH+
Sbjct: 950  SRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISALLQEYGYQLRGNEVMFNGHS 1009

Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
            GR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC
Sbjct: 1010 GRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDC 1069

Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1160
             IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKNKT I QV +PY
Sbjct: 1070 QIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPY 1129

Query: 1161 ACKLLFQELMAMAIAPRMLT 1180
            A KLLFQELM+M IAPR++ 
Sbjct: 1130 AAKLLFQELMSMNIAPRLMV 1149


>gi|387018202|gb|AFJ51219.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Crotalus
            adamanteus]
          Length = 1167

 Score = 1640 bits (4247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/1177 (67%), Positives = 947/1177 (80%), Gaps = 21/1177 (1%)

Query: 13   QQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70
            Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++
Sbjct: 2    QYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQ 61

Query: 71   PESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
             E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYV
Sbjct: 62   AEAQHATGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 119

Query: 131  DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
            D+TK VIK   +GE+  +TQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D G
Sbjct: 120  DITKTVIK---EGEDQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPG 175

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+
Sbjct: 176  GYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLA 234

Query: 251  R--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
            R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME++
Sbjct: 235  RGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMV 294

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            +PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKK
Sbjct: 295  KPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKK 354

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            AY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK
Sbjct: 355  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQK 414

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 487
             +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSH
Sbjct: 415  FIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSH 474

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PI
Sbjct: 475  LRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPI 534

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEV 606
            LEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV
Sbjct: 535  LEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEV 594

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
             ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G
Sbjct: 595  SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASG 653

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS+ILGVCASIIPFPDH
Sbjct: 654  VVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPSMILGVCASIIPFPDH 709

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGI
Sbjct: 710  NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 769

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            N+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R  
Sbjct: 770  NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPSRET 829

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISL 904
              GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+RD S  L
Sbjct: 830  CQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFL 889

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+
Sbjct: 890  RTSETGIVDQVMITLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 949

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALH 1023
            T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L 
Sbjct: 950  TCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLS 1009

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
              GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP E
Sbjct: 1010 DYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPME 1069

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE 1143
            GRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CGL+AIAN + +++E
Sbjct: 1070 GRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYE 1129

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CRGC+NKT I  V +PYACKLLFQELM+M+IAPRML+
Sbjct: 1130 CRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMLS 1166


>gi|443726751|gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
          Length = 1174

 Score = 1640 bits (4247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 791/1175 (67%), Positives = 939/1175 (79%), Gaps = 25/1175 (2%)

Query: 14   QEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPES 73
            +E ED   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++ E+
Sbjct: 14   EEAEDISSDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAEA 73

Query: 74   QHNPGQQSDFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 131
            QH  G      ET   Y I F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD
Sbjct: 74   QHTSGT----VETPPRYLIKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVD 129

Query: 132  VTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
            +TK +IK+G D  E        K F+GKVPIMLRS+YC L   +++DLTEL ECP D GG
Sbjct: 130  ITKTLIKEGDDPIEALSQ----KTFVGKVPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 185

Query: 192  YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR 251
            YFIINGSEKVLIAQEKM+TN VYVF +++ +KYAY  E+RS  E  +RP ST+++ M++R
Sbjct: 186  YFIINGSEKVLIAQEKMATNTVYVFSQKE-SKYAYKTEIRSCLEHSSRPTSTLWINMMAR 244

Query: 252  TS--AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 309
                 +  + GQ I A LPYIR EIP+IIVFRALGFV+D+DILEHI YDF D +MME+++
Sbjct: 245  GGHGVRKNAIGQRIIAILPYIRQEIPVIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVK 304

Query: 310  PSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKA 369
            PSL+EAFV+Q Q VAL++IG RGA  GVT++KRIKYAKEILQKEMLPHVG  DFCETKKA
Sbjct: 305  PSLDEAFVVQEQNVALNFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKA 364

Query: 370  YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC 429
            Y+ GYI+HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LFR LT++VR + QK 
Sbjct: 365  YFLGYIVHRLLLAALGRRECDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEVRLFSQKF 424

Query: 430  VDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHL 488
            +D GKD NL+ AI+ +TIT GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ STLSHL
Sbjct: 425  IDQGKDFNLELAIRTRTITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFVSTLSHL 484

Query: 489  RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
            RRLNSP+GR+GKLA+PRQLHN+QWGM+CPAETPEG   GLVKNLALM YI+VGS   PIL
Sbjct: 485  RRLNSPVGRDGKLARPRQLHNTQWGMICPAETPEGSCVGLVKNLALMAYISVGSQPSPIL 544

Query: 549  EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVG 607
            EFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TL++LRR++D + +EV 
Sbjct: 545  EFLEEWSMENLEEIAPSAIQDATKIFVNGCWVGIHRDPEQLMNTLKKLRRQMDIIVSEVS 604

Query: 608  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGF 667
            +VRDI  +E+RIYTD GR  RPL IVE Q+LL+KKR I  L++RE   + GW DLVA G 
Sbjct: 605  MVRDISDREIRIYTDAGRICRPLLIVENQKLLLKKRHIDLLKEREY-NNYGWQDLVASGV 663

Query: 668  IEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 727
            +EYIDT EEET M+SM+ + L       E  Y  +YTHCEIHPS+ILGVCASIIPFPDHN
Sbjct: 664  VEYIDTLEEETIMLSMSPDQL------QESGYCSSYTHCEIHPSMILGVCASIIPFPDHN 717

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VL+YPQKPLVTTR+ME+L FR+LPAGIN
Sbjct: 718  QSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAGIN 777

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AIVAIA Y+GYNQEDSVI+N+ ++DRGFFRS+F+RSY+D E K G   +E F RPD ++ 
Sbjct: 778  AIVAIASYTGYNQEDSVILNEGAVDRGFFRSVFYRSYKDSESKKGLDQEELFERPDPNHV 837

Query: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK--TTPISQDEAQGQASRYTRRDHSISLR 905
             GMR   YDKLDDDG+  PGTRVSG+DV+IGK  T P ++DE   QA R+T+RD S+ +R
Sbjct: 838  QGMRMAVYDKLDDDGIIAPGTRVSGDDVLIGKTLTLPENEDELDAQAKRFTKRDCSVFMR 897

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
             SETG++DQV++T N +G +F K+RVR+V+ PQIGDKF+SRHGQKGT G+ Y QEDMP+T
Sbjct: 898  RSETGIIDQVMVTINQEGYKFCKIRVRTVKTPQIGDKFASRHGQKGTCGIRYRQEDMPFT 957

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHK 1024
             EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATPF D V V  IS  L  
Sbjct: 958  CEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVRKISDLLQD 1017

Query: 1025 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1084
             GY +RG E ++NGHTGR+L A IF+GPTYYQRLKHMVDDKIHSR RGPVQIL RQP EG
Sbjct: 1018 YGYHLRGNEVLFNGHTGRKLNAQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEG 1077

Query: 1085 RSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFEC 1144
            RSRDGGLRFGEMERDC IAHGA+ FLKERLF+ SD YRVHVC  CGLIAIANL+ N+FEC
Sbjct: 1078 RSRDGGLRFGEMERDCQIAHGAAQFLKERLFEISDPYRVHVCNICGLIAIANLRNNTFEC 1137

Query: 1145 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            RGCKNKT I QV +PYACKLLFQELM+M+IAPRM+
Sbjct: 1138 RGCKNKTQISQVRMPYACKLLFQELMSMSIAPRMM 1172


>gi|431893877|gb|ELK03694.1| DNA-directed RNA polymerase II subunit RPB2 [Pteropus alecto]
          Length = 1167

 Score = 1640 bits (4247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/1177 (67%), Positives = 946/1177 (80%), Gaps = 21/1177 (1%)

Query: 13   QQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70
            Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++
Sbjct: 2    QYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQ 61

Query: 71   PESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
             E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYV
Sbjct: 62   AEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 119

Query: 131  DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
            D+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D G
Sbjct: 120  DITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPG 175

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+
Sbjct: 176  GYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLA 234

Query: 251  R--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
            R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME++
Sbjct: 235  RGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMV 294

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            +PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKK
Sbjct: 295  KPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKK 354

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            AY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK
Sbjct: 355  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQK 414

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 487
             +D GKD NL+ AI  K I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSH
Sbjct: 415  FIDRGKDFNLELAINTKIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSH 474

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PI
Sbjct: 475  LRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPI 534

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEV 606
            LEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV
Sbjct: 535  LEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEV 594

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
             ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G
Sbjct: 595  SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASG 653

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDH
Sbjct: 654  VVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDH 709

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGI
Sbjct: 710  NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 769

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            N+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R  
Sbjct: 770  NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRET 829

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISL 904
              GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+RD S  L
Sbjct: 830  CQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFL 889

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+
Sbjct: 890  RTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 949

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALH 1023
            T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L 
Sbjct: 950  TCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLS 1009

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
              GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP E
Sbjct: 1010 DYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPME 1069

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE 1143
            GRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++E
Sbjct: 1070 GRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYE 1129

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 CRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1166


>gi|348542471|ref|XP_003458708.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Oreochromis
            niloticus]
          Length = 1174

 Score = 1640 bits (4246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 792/1184 (66%), Positives = 949/1184 (80%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E +Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHTSGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK +IK   +GE+  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTIIK---EGEDQLQTQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY AE RS  E+ +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTAECRSCLENSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R     K  + GQ I +TLPYIR E+PIIIVFRALGFV+D+DILEHI YDF D
Sbjct: 235  IWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RIKYAKE+LQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGVSQVLNRLT 480
            +R Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG    A   RAGVSQVLNRLT
Sbjct: 415  IRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+K+R I  L++RE   +  W
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770  RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  YDKLDDDGL  PG RVSGEDVIIGKT   P + DE      RYT+
Sbjct: 830  EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             +S  L + GY +RG E +YNG TGR+LT+ IF+GPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1010 KVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CGL+AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM+T
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT 1173


>gi|57530101|ref|NP_001006448.1| DNA-directed RNA polymerase II subunit RPB2 [Gallus gallus]
 gi|53127025|emb|CAG31004.1| hypothetical protein RCJMB04_1i14 [Gallus gallus]
          Length = 1174

 Score = 1639 bits (4245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 794/1184 (67%), Positives = 951/1184 (80%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E  Q +E+D+E   ++ QE  W VIS+YF+E+GLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDADEDMQYDEDDDEITPDLWQEARWIVISSYFDEEGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHATGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   +GE+  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTVIK---EGEDQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235  IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770  RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    R+T+
Sbjct: 830  EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1010 KISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173


>gi|23512288|gb|AAH38472.1| Polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1167

 Score = 1639 bits (4244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 794/1177 (67%), Positives = 947/1177 (80%), Gaps = 21/1177 (1%)

Query: 13   QQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70
            Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++
Sbjct: 2    QYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQ 61

Query: 71   PESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
             E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYV
Sbjct: 62   AEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 119

Query: 131  DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
            D+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D G
Sbjct: 120  DITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPG 175

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+
Sbjct: 176  GYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLA 234

Query: 251  R--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
            R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME++
Sbjct: 235  RGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMV 294

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            +PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKK
Sbjct: 295  KPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKK 354

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            AY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK
Sbjct: 355  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQK 414

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 487
             +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSH
Sbjct: 415  FIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSH 474

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PI
Sbjct: 475  LRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPI 534

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEV 606
            LEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV
Sbjct: 535  LEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEV 594

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
             ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G
Sbjct: 595  SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASG 653

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDH
Sbjct: 654  VVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDH 709

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGI
Sbjct: 710  NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 769

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            N+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R  
Sbjct: 770  NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRET 829

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISL 904
              GMRH  Y+KLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+RD S  L
Sbjct: 830  CQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFL 889

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+
Sbjct: 890  RTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 949

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALH 1023
            T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L 
Sbjct: 950  TCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLS 1009

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
              GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP E
Sbjct: 1010 DYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPME 1069

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE 1143
            GRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++E
Sbjct: 1070 GRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYE 1129

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 CRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1166


>gi|302488402|ref|NP_001019632.2| DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]
          Length = 1174

 Score = 1639 bits (4244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 793/1184 (66%), Positives = 947/1184 (79%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHTSGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK +IK   DGEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTIIK---DGEEQQQTQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R     K  + GQ I +TLPYIR E+PIIIVFRALGFV+D+DILEHI YDF D
Sbjct: 235  IWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RIKYAKE+LQKE+LPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGVSQVLNRLT 480
            +R Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG    A   RAGVSQVLNRLT
Sbjct: 415  IRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+K+R I  L++RE   +  W
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770  RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  YDKLDDDGL  PG RVSGEDVIIGKT   P + DE      RYT+
Sbjct: 830  EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             +S  L + GY +RG E +YNG TGR+LT+ IF+GPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1010 KVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FLKERLF+ SD Y+VHVC  CGL+AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM+T
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT 1173


>gi|324120596|dbj|BAJ78689.1| RNA polymerase II second largest subunit [Lepidocampa weberi]
          Length = 1179

 Score = 1639 bits (4243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 801/1191 (67%), Positives = 947/1191 (79%), Gaps = 25/1191 (2%)

Query: 2    MEDDYDYEEQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQ 58
            M   Y+ E+    E+E+ EE   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q
Sbjct: 1    MAGVYEAEDDVYGEDEEMEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQ 60

Query: 59   EIVDESADIEIRPESQHNPGQQSDFAETI--YKISFGQIYLSKPMMTESDGETATLFPKA 116
             IV++S  I+++ E+QH  G+     ET   Y + F QIYLSKP   E DG    + P  
Sbjct: 61   RIVEDSPQIDLQAEAQHTTGE----VETPPRYLLKFEQIYLSKPTHWEKDGAPTPMMPNE 116

Query: 117  ARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 176
            ARLRNLTYSAPLYVD+TK VIK   +GEE  ETQ   K FIGK+PIMLRS+YC L   ++
Sbjct: 117  ARLRNLTYSAPLYVDITKSVIK---EGEEAIETQ-HQKTFIGKIPIMLRSTYCLLNGLTD 172

Query: 177  KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAES 236
            +DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY AE+RS  E 
Sbjct: 173  RDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEH 231

Query: 237  QNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 294
             +RP ST++V ML+R   S K  + GQ I A +PYI+ EIPI+IVFRALGFVAD+DILEH
Sbjct: 232  SSRPTSTLWVNMLARGGQSIKKSAIGQRIIAVVPYIKQEIPIMIVFRALGFVADRDILEH 291

Query: 295  ICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEM 354
            I YDF D +MME+++PSL+EAFV+Q Q VAL++IG RGA  GVT++KRIKYA+EILQKEM
Sbjct: 292  IIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEM 351

Query: 355  LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 414
            LPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR L
Sbjct: 352  LPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGL 411

Query: 415  FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 473
            F+ L ++VR Y QK +D GKD NL+ AIK + IT GL+YSLATGNWG Q  A   RAGVS
Sbjct: 412  FKNLLKEVRIYSQKFIDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGVS 471

Query: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
            QVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLA
Sbjct: 472  QVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLA 531

Query: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593
            LM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TL
Sbjct: 532  LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMSTL 591

Query: 594  RRLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 652
            R+LRR++D + +EV ++RDIR +E+RIYTD GR  RPL IVE  RL +KKR I  L++RE
Sbjct: 592  RKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGRLALKKRHIEMLKERE 651

Query: 653  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 712
               + GW DLVA G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP++
Sbjct: 652  Y-NNYGWQDLVASGVVEYIDTLEEETVMIAMSPEDLRQDK---EYAYCTTYTHCEIHPAM 707

Query: 713  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 772
            ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VL+YPQKPLVTTR
Sbjct: 708  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPQKPLVTTR 767

Query: 773  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 832
            +ME+L FR+LPAGIN++VAIACY+GYNQEDSVIMN S+++RGFFRS+F+RSY+D+E K  
Sbjct: 768  SMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYKDQECKRS 827

Query: 833  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQG 890
               +E F +P +    GMR+  YDKLD+DG+  PG RVSG+DVIIGKT   P + DE +G
Sbjct: 828  GDQEEQFEKPTKETCQGMRNAIYDKLDEDGIIAPGIRVSGDDVIIGKTITLPENDDELEG 887

Query: 891  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
               R+T+RD S  LR+SETG+VDQV++T NA+G +F K+RVRSVRIPQIGDKF+SRHGQK
Sbjct: 888  TTRRFTKRDASTFLRNSETGIVDQVMVTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQK 947

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GT G+ Y QEDM +T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF
Sbjct: 948  GTCGIQYRQEDMIFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPF 1007

Query: 1011 TD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 1069
             D V V  IS  L + GYQ+RG E MYNG +GR++ A IFLGPTYYQRLKHMVDDKIHSR
Sbjct: 1008 NDTVNVQKISNLLQEYGYQLRGNEVMYNGQSGRKINAQIFLGPTYYQRLKHMVDDKIHSR 1067

Query: 1070 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 1129
             RGPVQIL RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  C
Sbjct: 1068 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLC 1127

Query: 1130 GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            GLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPRM+ 
Sbjct: 1128 GLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRMMV 1178


>gi|324120650|dbj|BAJ78716.1| RNA polymerase II second largest subunit [Anacanthocoris striicornis]
          Length = 1175

 Score = 1638 bits (4242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 797/1186 (67%), Positives = 948/1186 (79%), Gaps = 26/1186 (2%)

Query: 8    YEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YE   +Q E+DE EEI+    QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YELDEEQYEDDEAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            S  I+++ E+QH  G+     ET   Y + F QIYLSKP   E DG  + + P  ARLRN
Sbjct: 62   SPQIDLQAEAQHTSGE----VETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRN 117

Query: 122  LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 181
            LTYSAPLYVD+TK +I+   +GEE  E+Q   K FIGK+PIMLRS+YC L   +++DLTE
Sbjct: 118  LTYSAPLYVDITKTIIR---EGEEPIESQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 173

Query: 182  LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP 241
            L ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   K+AY AE+RS  E  +RP 
Sbjct: 174  LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPT 232

Query: 242  STMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 299
            ST++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF
Sbjct: 233  STLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF 292

Query: 300  QDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVG 359
             D +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RIKYA+EILQKEMLPHVG
Sbjct: 293  DDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVG 352

Query: 360  TGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 419
              DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L 
Sbjct: 353  VSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLM 412

Query: 420  RDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNR 478
            ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNR
Sbjct: 413  KEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR 472

Query: 479  LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
            LT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI
Sbjct: 473  LTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYI 532

Query: 539  TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRR 598
            +VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR
Sbjct: 533  SVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRR 592

Query: 599  RVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG 657
            ++D + +EV ++RDIR +E+RIYTD GR  RPL IVE  +LL+KKR I  L++R+   + 
Sbjct: 593  QMDIIVSEVSIIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRHIENLKERDY-NNY 651

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVC 717
            GW  LV+ G +EYIDT EEETTMI+++  DL Q +   E AY  TYTHCEIHP++ILGVC
Sbjct: 652  GWQVLVSSGVVEYIDTLEEETTMIAISPEDLRQDK---EYAYCTTYTHCEIHPAMILGVC 708

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L
Sbjct: 709  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
             FR+LPAGIN+IVAIACY+GYNQEDSVI+N S+++RGFFRS+FFRSY+D E K     +E
Sbjct: 769  RFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRVGDQEE 828

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRY 895
             F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +G   ++
Sbjct: 829  QFEKPMRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDELEGTTKKF 888

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
            T+RD S  LR+SETG+VDQV+LT NA+G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+
Sbjct: 889  TKRDASTFLRNSETGIVDQVMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 948

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VT 1014
             Y QEDMP+T EG++PDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V 
Sbjct: 949  QYRQEDMPFTCEGLSPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVN 1008

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1074
            V  IS  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPV
Sbjct: 1009 VQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPV 1068

Query: 1075 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAI 1134
            QIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAI
Sbjct: 1069 QILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNLCGLIAI 1128

Query: 1135 ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            ANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1129 ANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120652|dbj|BAJ78717.1| RNA polymerase II second largest subunit [Bemisia tabaci]
          Length = 1176

 Score = 1638 bits (4241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 792/1184 (66%), Positives = 944/1184 (79%), Gaps = 20/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD E+ +  +E+  E   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDLEDDNYGDEDSGEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH  G+        Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPQIDLQAEAQHTSGEIE--TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   DG+E   T+   K FIGK+PIMLRS++C L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTVIK---DGQEPVVTE-HEKSFIGKIPIMLRSTFCLLSGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+DKRIKYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD N++ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNMELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE Q LL+K+  +  L+QR+   +  W
Sbjct: 595  DIIVSEVSIIRDIRDREIRIYTDAGRICRPLLIVENQTLLLKRSHVDNLKQRDY-NNYKW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             +LV+ G +EYIDT EEETTMI+M+  DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QELVSSGVVEYIDTLEEETTMIAMSPEDLRQDK---EYAYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+FFRSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDSESKRIGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P+RS   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +G   RY++
Sbjct: 831  EKPNRSTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDELEGTTKRYSK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EG+ PDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GYQ+RG E MYNGH+GR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISTLLQEYGYQLRGNEVMYNGHSGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC +CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNYCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|324120654|dbj|BAJ78718.1| RNA polymerase II second largest subunit [Uroleucon
            nigrotuberculatum]
          Length = 1177

 Score = 1638 bits (4241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 792/1166 (67%), Positives = 940/1166 (80%), Gaps = 18/1166 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI++YF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE++ ESQH  G+  
Sbjct: 21   ELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAESQHTHGEID 80

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
                T Y+I F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK VIK   
Sbjct: 81   --TPTKYQIKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 135

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            DGEE   TQ  +K FIGK+PIMLRS+YC L+  +++DLTEL ECP D GGYFIINGSEKV
Sbjct: 136  DGEEPVVTQH-SKSFIGKIPIMLRSTYCLLFGLNDRDLTELNECPLDPGGYFIINGSEKV 194

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF  +   KYA+ AE+RS  E  +RP ST++V M++R   S K  + 
Sbjct: 195  LIAQEKMATNTVYVFSMKD-GKYAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAI 253

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 254  GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 313

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT+DKRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 314  EQNVALNFIGSRGARPGVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 373

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL 
Sbjct: 374  LLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLD 433

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 434  LAIKTKLITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 493

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 494  GKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 553

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 554  LEEIAPSAIVDATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREI 613

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE  +LL+KKR I +L++R+   + GW  LV+ G +EYIDT EEE
Sbjct: 614  RIYTDAGRICRPLLIVENGKLLLKKRHIDSLKERDY-NNYGWQVLVSNGVVEYIDTLEEE 672

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            TTMI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 673  TTMIAMSPDDLRQEK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 729

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+G
Sbjct: 730  MGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTG 789

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVI+N S+++RGFFRS+FFRSY+D E K     +E F +P+R +  GMR+  YDK
Sbjct: 790  YNQEDSVILNASAVERGFFRSVFFRSYKDSESKRIGDQEEVFEKPNRQSCQGMRNAIYDK 849

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDG+  PG RVSG+DVIIGKT   P ++DE +G   +Y++RD S  LR+SETG++DQV
Sbjct: 850  LDDDGIISPGLRVSGDDVIIGKTMTLPDNEDELEGTTKKYSKRDCSTFLRNSETGLIDQV 909

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            LLT N++G +F K+RVRS RIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+
Sbjct: 910  LLTLNSEGYKFCKIRVRSERIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 969

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L + GYQ+RG E 
Sbjct: 970  NPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEV 1029

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MYNG +GR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFG
Sbjct: 1030 MYNGFSGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1089

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC IAHGA+ FL+ERLF+ SD YR+H+C  CGLIAIANL+ N+FEC+GCKNKT I 
Sbjct: 1090 EMERDCQIAHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQIS 1149

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
            QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1150 QVKLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|397469837|ref|XP_003806546.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan paniscus]
          Length = 1226

 Score = 1637 bits (4240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/1177 (67%), Positives = 947/1177 (80%), Gaps = 21/1177 (1%)

Query: 13   QQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70
            Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++
Sbjct: 61   QYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQ 120

Query: 71   PESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
             E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYV
Sbjct: 121  AEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 178

Query: 131  DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
            D+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D G
Sbjct: 179  DITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPG 234

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+
Sbjct: 235  GYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLA 293

Query: 251  R--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
            R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME++
Sbjct: 294  RGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMV 353

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            +PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKK
Sbjct: 354  KPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKK 413

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            AY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK
Sbjct: 414  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQK 473

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 487
             +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSH
Sbjct: 474  FIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSH 533

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PI
Sbjct: 534  LRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPI 593

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEV 606
            LEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV
Sbjct: 594  LEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEV 653

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
             ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G
Sbjct: 654  SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASG 712

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDH
Sbjct: 713  VVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDH 768

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGI
Sbjct: 769  NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 828

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            N+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R  
Sbjct: 829  NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRET 888

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISL 904
              GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+RD S  L
Sbjct: 889  CQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFL 948

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+
Sbjct: 949  RTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 1008

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALH 1023
            T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L 
Sbjct: 1009 TCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLS 1068

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
              GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP E
Sbjct: 1069 DYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPME 1128

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE 1143
            GRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++E
Sbjct: 1129 GRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYE 1188

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1189 CRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1225


>gi|324120666|dbj|BAJ78724.1| RNA polymerase II second largest subunit [Chrysoperla nipponensis]
          Length = 1175

 Score = 1637 bits (4238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 792/1184 (66%), Positives = 941/1184 (79%), Gaps = 20/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD EE    E   EE   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDEEEDVYDEGAGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  IE++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPQIELQAEAQHTSGEMENPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK ++K   +GEE   TQ   K FIGK+PIMLRSS+C L + +++DLTEL 
Sbjct: 120  YSAPLYVDITKTIVK---EGEEPIVTQH-QKTFIGKIPIMLRSSFCLLSKLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYA+ +E+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKSEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL  AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR SRPL IVE   LL+KK  I  L+ RE   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRISRPLIIVENGSLLLKKSHIDMLKDREY-NNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LV  G +EYIDT EEETTMI+++ +DL  ++   E AY  TYTHCEIHP++ILG+CAS
Sbjct: 654  QGLVGSGVVEYIDTLEEETTMIAISPDDLRNSK---EYAYCSTYTHCEIHPAMILGICAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGEQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +G   RYT+
Sbjct: 831  EKPTRQTCSGMRHALYDKLDDDGIISPGVRVSGDDVVIGKTMTLPENEDELEGTTKRYTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GKV+++ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GYQ+RG E MYNGHTGR++ A +F GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1011 KISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFFGPTYYQRLKHMVDDKIHSRARGPLQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP+EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPSEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|449676040|ref|XP_002163509.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Hydra
            magnipapillata]
          Length = 1184

 Score = 1636 bits (4237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 800/1190 (67%), Positives = 949/1190 (79%), Gaps = 23/1190 (1%)

Query: 2    MEDDYDYEEQH--QQEEEDE-EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQ 58
            M D  D ++ H    EE+DE  +E+ QE  W VIS+YFEEKGLVRQQLDSFDEFIQ ++Q
Sbjct: 1    MYDPIDEDDDHYDNTEEDDEISKELWQEACWTVISSYFEEKGLVRQQLDSFDEFIQMSVQ 60

Query: 59   EIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 118
             IV+ES  IE++ E+Q+   +  +   T Y++ F QIYLSKP   E DG    + P  AR
Sbjct: 61   RIVEESPPIELQAETQYTENEIEE--PTRYQLKFEQIYLSKPTHWEKDGAPKPMMPNEAR 118

Query: 119  LRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKD 178
            LRNLTYSAPLYVD++K + + G +     ET++ +K++IGK+PIMLRS+YC L    ++D
Sbjct: 119  LRNLTYSAPLYVDISKTITRSGQE----PETEEHSKIYIGKIPIMLRSTYCVLSGLVDRD 174

Query: 179  LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQN 238
            LTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E+RS  E  +
Sbjct: 175  LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFHKKD-SKYAYSCEIRSCLEQSS 233

Query: 239  RPPSTMFVRMLSRTSAKGGSS---GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 295
            RP STMF+ ML++    G      GQ I AT+PYIR EIPI+IVFRALGFV+D+DILEHI
Sbjct: 234  RPTSTMFISMLAKGGGGGAKKSAIGQRIIATIPYIRQEIPIMIVFRALGFVSDRDILEHI 293

Query: 296  CYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEML 355
             YDF D +MME+++PSL+EAFV+Q Q VAL++IG RGA  GVT++KRIKYA+EILQKEML
Sbjct: 294  IYDFTDQEMMEMVKPSLDEAFVVQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEML 353

Query: 356  PHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 415
            PHVGT DFCETKKAY+ GY++HR+LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF
Sbjct: 354  PHVGTSDFCETKKAYFLGYMVHRILLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLF 413

Query: 416  RKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQ 474
            + L ++VR Y QK +D GKD  ++ AIK KTIT GL+YSLATGNWG Q  A   RAGVSQ
Sbjct: 414  KNLMKEVRLYAQKFIDKGKDFKIELAIKTKTITDGLRYSLATGNWGDQKKAHQARAGVSQ 473

Query: 475  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 534
            VLNRLT+ASTLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEGQA GLVKNLAL
Sbjct: 474  VLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTHWGMICPAETPEGQAVGLVKNLAL 533

Query: 535  MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 594
            M YI+VGS   PILEFLEEW  EN EEISP+ I  ATKIFVNGCWVGIHRDPE L+ TLR
Sbjct: 534  MAYISVGSQPSPILEFLEEWAMENLEEISPSAIKDATKIFVNGCWVGIHRDPEQLILTLR 593

Query: 595  RLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 653
            RLRR++D + +EV +VRDIR KE+RIYTD GR  RPL IVE Q+LL+KK  +  L++RE 
Sbjct: 594  RLRRQMDIIVSEVSMVRDIRDKEIRIYTDAGRVCRPLLIVENQKLLLKKSHVDQLKEREM 653

Query: 654  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 713
              + GW DLV+KG +EYID  EEET MI+M++ DL +     E  Y+ TYTH EIHPS+I
Sbjct: 654  -NNFGWQDLVSKGVVEYIDVNEEETAMIAMSLEDLEER----EHKYSSTYTHSEIHPSMI 708

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+
Sbjct: 709  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRS 768

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            M+ L FR+LPAGIN+IVAIA Y+GYNQEDSV++N S+I+RG +RS+F+RSYRDEE + G 
Sbjct: 769  MDFLKFRELPAGINSIVAIASYTGYNQEDSVLLNASAINRGLYRSVFYRSYRDEESRKGL 828

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQ 891
              +E F +P+R  T GMR   YDKLDDDGL PPG+RVSG+DVIIGKT   P  +DE   Q
Sbjct: 829  DQEEKFEKPNRDETTGMRAAIYDKLDDDGLIPPGSRVSGDDVIIGKTVTLPDDEDETDSQ 888

Query: 892  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
            A  + +RD S  LR SETG+VDQV+LT N +G +F K++VRSVRIPQIGDKF+SRHGQKG
Sbjct: 889  AKHFKKRDASTFLRASETGIVDQVMLTINEEGYKFCKIKVRSVRIPQIGDKFASRHGQKG 948

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T G+TY QEDMP+T EGI+PDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF 
Sbjct: 949  TCGITYRQEDMPFTCEGISPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFN 1008

Query: 1012 D-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 1070
            D V V  +S  L + GY +RG E +YNG TGR+L A +FLGPTYYQRLKHMVDDKIHSR 
Sbjct: 1009 DAVNVQLVSSLLQEYGYHLRGNEVLYNGFTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRA 1068

Query: 1071 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 1130
            RGPVQILTRQP EGRSRDGGLRFGEMERDC IAHGA+ FL ERLF+ SDAYRVHVC  CG
Sbjct: 1069 RGPVQILTRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLNERLFEASDAYRVHVCNLCG 1128

Query: 1131 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            LIAIANL+ N+FECR CKNKT + Q+ IPYACKLLFQELM+M+IAPRM+ 
Sbjct: 1129 LIAIANLRNNTFECRSCKNKTQVSQIRIPYACKLLFQELMSMSIAPRMMV 1178


>gi|357621065|gb|EHJ73034.1| hypothetical protein KGM_12615 [Danaus plexippus]
          Length = 1176

 Score = 1636 bits (4236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 792/1184 (66%), Positives = 942/1184 (79%), Gaps = 20/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD E+   +EEE E+   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDTEDDQYEEEEVEDISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  IE++ E+QH+ G+     +  Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPPIELQAEAQHSSGEIETPPK--YHLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK ++K   + E+  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTIVK---ENEDPIETQ-HQKTFIGKIPIMLRSTYCLLSNLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF   Q  KYAY  E+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM-QGGKYAYKTEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A +PYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIVAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL +IG RGA  GVT+++RIKYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALSFIGARGARPGVTKERRIKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDKGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK+ I  L++R+   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKKHIDQLKERDY-NNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             +LVA G +EYIDT EEET MI+M  +DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QNLVASGVVEYIDTLEEETVMIAMNPDDLQQIK---EYAYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VL+YP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPHKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE +G   R+T+
Sbjct: 831  EKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTKRFTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIECI GKV+++ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISSLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120594|dbj|BAJ78688.1| RNA polymerase II second largest subunit [Metriocampa sp. 44]
          Length = 1176

 Score = 1636 bits (4236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 790/1165 (67%), Positives = 936/1165 (80%), Gaps = 18/1165 (1%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            + QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+  +
Sbjct: 22   LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTTGEVEN 81

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                 Y + F QIYLSKP   E DG    + P  ARLRNLTYSAPLYVD+TK ++K   +
Sbjct: 82   PPR--YLLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKSIVK---E 136

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
            GEE  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKVL
Sbjct: 137  GEEAVETQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 195

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSG 260
            IAQEKM+TN VYVF  +   KYAY +E+RS  E  +RP ST++V ML+R   S K  + G
Sbjct: 196  IAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWVNMLARGGQSIKKSAIG 254

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
            Q I A +PYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV+Q 
Sbjct: 255  QRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQE 314

Query: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRLL
Sbjct: 315  QNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 374

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
            L ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL+ 
Sbjct: 375  LAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFIDRGKDFNLEL 434

Query: 441  AIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 499
            AIK + IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+G
Sbjct: 435  AIKTRIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG 494

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN 
Sbjct: 495  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 554

Query: 560  EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELR 618
            EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+R
Sbjct: 555  EEIAPSAIADATKIFVNGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIR 614

Query: 619  IYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEET 678
            IYTD GR  RPL IVE  +L +KKR I  L++RE   + GW DLVA G +EYIDT EEET
Sbjct: 615  IYTDAGRICRPLLIVEGGKLSLKKRHIEMLKEREY-NNYGWQDLVASGVVEYIDTLEEET 673

Query: 679  TMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 738
             MI+M+  DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAM
Sbjct: 674  VMIAMSPEDLRQDK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM 730

Query: 739  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 798
            GKQAMG+Y+TN+  RMDTLA+VL+YPQKPLVTTR+ME+L FR+LPAGIN+IVAIACY+GY
Sbjct: 731  GKQAMGVYITNFHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAGINSIVAIACYTGY 790

Query: 799  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 858
            NQEDSVIMN S+++RGFFRS+F+R+Y+D+E K     +E F +P R +  GMR+  YDKL
Sbjct: 791  NQEDSVIMNTSAVERGFFRSVFYRAYKDQECKRSGDQEEQFEKPTRESCQGMRNAIYDKL 850

Query: 859  DDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVL 916
            DDDG+  PG RVSG+DVIIGKT   PI+ DE +G   R+++RD S  LR+SETG+VDQV+
Sbjct: 851  DDDGIIAPGIRVSGDDVIIGKTITLPITDDELEGTTKRFSKRDASTFLRNSETGIVDQVM 910

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            +T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+N
Sbjct: 911  VTLNNEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIIN 970

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETM 1035
            PHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L + GYQ+RG E M
Sbjct: 971  PHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDTVNVQKISNLLQEYGYQLRGNEVM 1030

Query: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1095
            YNG TGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGE
Sbjct: 1031 YNGQTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGE 1090

Query: 1096 MERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQ 1155
            MERDC IAHGA+ FL+ERLF+ SD YRVHVC  CGLIAIANL+ N+FEC+GCKNKT I Q
Sbjct: 1091 MERDCQIAHGAAQFLRERLFEVSDPYRVHVCNLCGLIAIANLRNNTFECKGCKNKTQISQ 1150

Query: 1156 VHIPYACKLLFQELMAMAIAPRMLT 1180
            V +PYA KLLFQELMAM IAPR++ 
Sbjct: 1151 VRLPYAAKLLFQELMAMNIAPRLMV 1175


>gi|449270676|gb|EMC81333.1| DNA-directed RNA polymerase II subunit RPB2, partial [Columba livia]
          Length = 1168

 Score = 1635 bits (4235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 792/1177 (67%), Positives = 947/1177 (80%), Gaps = 21/1177 (1%)

Query: 13   QQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70
            Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++
Sbjct: 3    QYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQ 62

Query: 71   PESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
             E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYV
Sbjct: 63   AEAQHATGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 120

Query: 131  DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
            D+TK VIK   +GE+  +TQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D G
Sbjct: 121  DITKTVIK---EGEDQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPG 176

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+
Sbjct: 177  GYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLA 235

Query: 251  R--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
            R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME++
Sbjct: 236  RGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMV 295

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            +PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKK
Sbjct: 296  KPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKK 355

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            AY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK
Sbjct: 356  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQK 415

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 487
             +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSH
Sbjct: 416  FIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSH 475

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PI
Sbjct: 476  LRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPI 535

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEV 606
            LEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV
Sbjct: 536  LEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEV 595

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
             ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G
Sbjct: 596  SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASG 654

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS+ILGVCASIIPFPDH
Sbjct: 655  VVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPSMILGVCASIIPFPDH 710

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGI
Sbjct: 711  NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 770

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            N+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R  
Sbjct: 771  NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRET 830

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISL 904
              GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    R+T+RD S  L
Sbjct: 831  CQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFL 890

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+
Sbjct: 891  RTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 950

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALH 1023
            T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L 
Sbjct: 951  TCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLS 1010

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
              GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP E
Sbjct: 1011 DYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPME 1070

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE 1143
            GRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++E
Sbjct: 1071 GRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYE 1130

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1131 CRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1167


>gi|324120632|dbj|BAJ78707.1| RNA polymerase II second largest subunit [Euborellia plebeja]
          Length = 1174

 Score = 1635 bits (4235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 794/1166 (68%), Positives = 933/1166 (80%), Gaps = 18/1166 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+  
Sbjct: 19   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTAGEIE 78

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK +IK   
Sbjct: 79   NPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 133

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            D EE  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKV
Sbjct: 134  DKEEPIETQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKV 192

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF  +   K+AY AE+RS  E  +RP ST++V M++R   S K  + 
Sbjct: 193  LIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAI 251

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 252  GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 311

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVTR+KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 312  EQNVALNFIGARGARPGVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 371

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL 
Sbjct: 372  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLD 431

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 432  LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 491

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 492  GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 551

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 552  LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREI 611

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE   LL+KKR I  L++RE   + GW  LVA G +EYIDT EEE
Sbjct: 612  RIYTDAGRICRPLLIVENGSLLLKKRHIDMLKEREY-NNYGWQVLVASGVVEYIDTLEEE 670

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 671  TVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 727

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+G
Sbjct: 728  MGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTG 787

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMN S+++RGFFRS+FFRSY+D E K     +E F +P R    GMR+  YDK
Sbjct: 788  YNQEDSVIMNASAVERGFFRSVFFRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNALYDK 847

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDG+  PG RVSG+DV+IGKT   P ++DE  G   RYT+RD S  LR+SETG+VDQV
Sbjct: 848  LDDDGIISPGLRVSGDDVVIGKTITLPENEDELDGTTKRYTKRDASTFLRNSETGIVDQV 907

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+
Sbjct: 908  MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIII 967

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V  IS  L + GYQ+RG E 
Sbjct: 968  NPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEV 1027

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFG
Sbjct: 1028 MYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1087

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I 
Sbjct: 1088 EMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLCGLIAIANMRNNTFECKGCKNKTQIS 1147

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
            QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1148 QVRLPYAAKLLFQELMSMNIAPRLMV 1173


>gi|324120618|dbj|BAJ78700.1| RNA polymerase II second largest subunit [Aposthonia japonica]
          Length = 1150

 Score = 1635 bits (4235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 788/1160 (67%), Positives = 933/1160 (80%), Gaps = 18/1160 (1%)

Query: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
             W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+        
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHASGEIE--TPPR 58

Query: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
            Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK +++   DGEE  
Sbjct: 59   YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVR---DGEEPI 115

Query: 148  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
            ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 116  ETQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 174

Query: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRA 265
            M+TN VYVF  +   KYAY  E+RS  E  +RP ST++V M++R   S K  + GQ I A
Sbjct: 175  MATNTVYVFSMKD-GKYAYKTEIRSCQEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIA 233

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
             LPYIR EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL
Sbjct: 234  ILPYIRQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 293

Query: 326  DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 385
            ++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRLLL ALG
Sbjct: 294  NFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 353

Query: 386  RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
            RR  DDRDHYGNKRLDLAGPLL  LFR LF+ LT++VR Y QK +D GKD NL+ AIK K
Sbjct: 354  RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLTKEVRMYAQKFIDRGKDFNLELAIKTK 413

Query: 446  TITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
             IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKP
Sbjct: 414  IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 473

Query: 505  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 564
            RQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN EEI+P
Sbjct: 474  RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIAP 533

Query: 565  AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDY 623
            + I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+RIYTD 
Sbjct: 534  SAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDA 593

Query: 624  GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISM 683
            GR  RPL IVE   LL+KKR +  L++RE   + GW  LVA+G +EYIDT EEET MI+M
Sbjct: 594  GRICRPLLIVENGSLLLKKRHVDMLKEREY-NNYGWQVLVAQGVVEYIDTLEEETVMIAM 652

Query: 684  TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
            + +DL Q +   E AY +TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 653  STDDLKQDK---EFAYCNTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 709

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN++VAI CY+GYNQEDS
Sbjct: 710  GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVAILCYTGYNQEDS 769

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            VIMN S+++RGFFRS+FFRSY+D E K     +E F +P R    GMR+  YDKLDDDG+
Sbjct: 770  VIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGI 829

Query: 864  APPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG+DV+IGKT   P ++DE +G   R+T+RD S  LR+SETG+VDQV+LT N+
Sbjct: 830  ISPGIRVSGDDVVIGKTITLPDNEDELEGSTKRFTKRDASTFLRNSETGIVDQVMLTLNS 889

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+NPHAIP
Sbjct: 890  EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIP 949

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHT 1040
            SRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L + GYQ+RG E MYNGHT
Sbjct: 950  SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHT 1009

Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
            GR++ A IFLGPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGR+RDGGLRFGEMERDC
Sbjct: 1010 GRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPLQILVRQPMEGRARDGGLRFGEMERDC 1069

Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1160
             I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKNKT I QV +PY
Sbjct: 1070 QISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRSNTFECKGCKNKTQISQVRLPY 1129

Query: 1161 ACKLLFQELMAMAIAPRMLT 1180
            A KLLFQELM+M IAPR++ 
Sbjct: 1130 AAKLLFQELMSMNIAPRLMV 1149


>gi|324120636|dbj|BAJ78709.1| RNA polymerase II second largest subunit [Zorotypus sp. 154-1]
          Length = 1173

 Score = 1635 bits (4234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 794/1182 (67%), Positives = 943/1182 (79%), Gaps = 18/1182 (1%)

Query: 6    YDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            YD ++Q+++E E+   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S 
Sbjct: 2    YDDDDQYEEEGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 61

Query: 66   DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
             IE++ E+QH  G+        Y + F QIYLSKP   E DG  + + P  ARLRNLTYS
Sbjct: 62   QIELQAEAQHTTGEIE--TPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYS 119

Query: 126  APLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
            APLYVD+TK +++   DGE+  E Q   K FIGK+PIMLRS+YC L   +++DLTEL EC
Sbjct: 120  APLYVDITKTIVR---DGEDPIEAQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNEC 175

Query: 186  PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
            P D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY +E+RS  E  +RP ST++
Sbjct: 176  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLW 234

Query: 246  VRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQ 303
            V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +
Sbjct: 235  VNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPE 294

Query: 304  MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDF 363
            MME+++PSL+EAFVIQ Q VAL++IG RGA  GVTR+KRIKYAKEILQKEMLPHVG  DF
Sbjct: 295  MMEMVKPSLDEAFVIQEQNVALNFIGSRGARPGVTREKRIKYAKEILQKEMLPHVGVSDF 354

Query: 364  CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 423
            CETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR
Sbjct: 355  CETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVR 414

Query: 424  AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYA 482
             Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+A
Sbjct: 415  LYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFA 474

Query: 483  STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 542
            STLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS
Sbjct: 475  STLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGS 534

Query: 543  AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD- 601
               PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR +D 
Sbjct: 535  QPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRREMDI 594

Query: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 661
            + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KKR I  L+ RE   + GW  
Sbjct: 595  IVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDMLKDREY-NNYGWQV 653

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
            LV+ G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASII
Sbjct: 654  LVSSGLVEYIDTLEEETVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPAMILGVCASII 710

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+
Sbjct: 711  PFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRE 770

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+FFRSY+D E K     +E F +
Sbjct: 771  LPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEK 830

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRD 899
            P+R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT  +  + DE +G   R+T+RD
Sbjct: 831  PNRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTMTLHETDDELEGTTKRFTKRD 890

Query: 900  HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 959
             S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y Q
Sbjct: 891  ASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQ 950

Query: 960  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNI 1018
            EDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V  I
Sbjct: 951  EDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKI 1010

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
            S  L + GYQ+RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL 
Sbjct: 1011 STLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILV 1070

Query: 1079 RQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLK 1138
            RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+
Sbjct: 1071 RQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLR 1130

Query: 1139 KNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++ 
Sbjct: 1131 NNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMV 1172


>gi|324120616|dbj|BAJ78699.1| RNA polymerase II second largest subunit [Phraortes illepidus]
          Length = 1150

 Score = 1635 bits (4233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 790/1160 (68%), Positives = 929/1160 (80%), Gaps = 18/1160 (1%)

Query: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
             W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+  +     
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPR-- 58

Query: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
            Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK +IK   DG+E  
Sbjct: 59   YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK---DGDEPM 115

Query: 148  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
            E+Q   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 116  ESQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 174

Query: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRA 265
            M+TN VYVF  +   KYAY AE+RS  E  +RP ST++V M++R   S K  + GQ I A
Sbjct: 175  MATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIA 233

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
             +PYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL
Sbjct: 234  IMPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDQEMMEMVKPSLDEAFVIQEQNVAL 293

Query: 326  DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 385
            ++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRLLL ALG
Sbjct: 294  NFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 353

Query: 386  RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
            RR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL+ AIK K
Sbjct: 354  RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKTLMKEVRMYAQKFIDRGKDFNLELAIKTK 413

Query: 446  TITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
             IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKP
Sbjct: 414  IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 473

Query: 505  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 564
            RQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN EEI+P
Sbjct: 474  RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 533

Query: 565  AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDY 623
            + I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+RIYTD 
Sbjct: 534  SAIADATKIFVNGCWVGIHRDPEQLMTTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDA 593

Query: 624  GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISM 683
            GR  RPL IVE  +LL+KKR I  L+ RE   + GW  LVA G +EYIDT EEET MI+M
Sbjct: 594  GRICRPLLIVENGKLLLKKRHIDMLKDREY-NNYGWQVLVASGVVEYIDTLEEETVMIAM 652

Query: 684  TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
               D+   +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 653  MTEDMKHEK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 709

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+Y+TNY  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN++VAI CY+GYNQEDS
Sbjct: 710  GVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVAILCYTGYNQEDS 769

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            VIMN S+++RGFFRS+FFRSY+D E K     +E F +P R    GMR+  YDKLDDDG+
Sbjct: 770  VIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGI 829

Query: 864  APPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG+DV+IGKT   P ++DE +G   R+T+RD S  LR+SETG+VDQV+LT NA
Sbjct: 830  IAPGIRVSGDDVVIGKTITLPDNEDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNA 889

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+NPHAIP
Sbjct: 890  EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIP 949

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHT 1040
            SRMTIG LIEC+ GKV+++ G+ GDATPF D V V  IS  L + GYQ+RG E MYNGHT
Sbjct: 950  SRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISALLQEYGYQLRGNEVMYNGHT 1009

Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
            GR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGRSRDGGLRFGEMERDC
Sbjct: 1010 GRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRSRDGGLRFGEMERDC 1069

Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1160
             IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKNKT I QV +PY
Sbjct: 1070 QIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPY 1129

Query: 1161 ACKLLFQELMAMAIAPRMLT 1180
            A KLLFQELMAM IAPR++ 
Sbjct: 1130 AAKLLFQELMAMNIAPRLMV 1149


>gi|324120634|dbj|BAJ78708.1| RNA polymerase II second largest subunit [Forficula hiromasai]
          Length = 1174

 Score = 1634 bits (4232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 791/1166 (67%), Positives = 932/1166 (79%), Gaps = 18/1166 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE++ E+QH  G+  
Sbjct: 19   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTAGEIE 78

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            +  +  Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK +IK   
Sbjct: 79   NPPK--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 133

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            D EE  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKV
Sbjct: 134  DKEEPIETQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKV 192

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF  +   KYAY +E+RS  E  +RP ST++V M++R   S K  + 
Sbjct: 193  LIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAI 251

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 252  GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 311

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVTR+KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 312  EQNVALNFIGARGARPGVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 371

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL 
Sbjct: 372  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLD 431

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 432  LAIKTKIITDGLRYSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 491

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 492  GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 551

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 552  LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREI 611

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE   LL+KK  I  L++RE   + GW  LVA G +EYIDT EEE
Sbjct: 612  RIYTDAGRICRPLLIVENGNLLLKKHHIDMLKEREH-NNYGWQVLVASGVVEYIDTLEEE 670

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 671  TVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 727

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+G
Sbjct: 728  MGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTG 787

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMN S+++RG FRS+F+RSY+D E K     +E F +P R    GMR+  YDK
Sbjct: 788  YNQEDSVIMNASAVERGLFRSVFYRSYKDSESKRNGDQEEQFEKPTRQTCQGMRNALYDK 847

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDG+  PG RVSG+DV+IGKT   P ++DE  G   RYT+RD S  LR+SETG+VDQV
Sbjct: 848  LDDDGIISPGLRVSGDDVVIGKTITLPENEDELDGTTKRYTKRDASTFLRNSETGIVDQV 907

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+
Sbjct: 908  MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIII 967

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V  IS  L + GYQ+RG E 
Sbjct: 968  NPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEV 1027

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFG
Sbjct: 1028 MYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1087

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC IAHGA+ FL+ERLF+ SD YR+H+C  CGLIAIAN++ N+FEC+GCKNKT I 
Sbjct: 1088 EMERDCQIAHGAAQFLRERLFEVSDPYRIHICNLCGLIAIANMRNNTFECKGCKNKTQIS 1147

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
            QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1148 QVKLPYAAKLLFQELMSMNIAPRLMV 1173


>gi|324120602|dbj|BAJ78692.1| RNA polymerase II second largest subunit [Nipponatelura sp. 66-1]
          Length = 1175

 Score = 1634 bits (4232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 788/1165 (67%), Positives = 937/1165 (80%), Gaps = 18/1165 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF++KGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+  
Sbjct: 20   ELWQEACWIVINAYFDDKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIE 79

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK +IK   
Sbjct: 80   NPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK--- 134

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            DG+E  ETQ+  K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKV
Sbjct: 135  DGDEPVETQN-QKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV 193

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF  +   KYA+ +E+RS  E  +RP ST++V M++R   S K  + 
Sbjct: 194  LIAQEKMATNTVYVFSMKD-GKYAFKSEIRSCQEHSSRPTSTLWVNMMARGGQSIKKSAI 252

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 253  GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 312

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 313  EQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 372

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL+
Sbjct: 373  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLE 432

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 433  LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 492

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 493  GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 552

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 553  LEEIAPSAISDATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREI 612

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE   LL+KK+ I  L+++E   + GW  LVA+G +EYIDT EEE
Sbjct: 613  RIYTDAGRICRPLLIVENGHLLLKKKHIDMLKEKEY-NNYGWQVLVAQGVVEYIDTLEEE 671

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T MI+MT +DL Q +   E AY   YTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 672  TVMIAMTPDDLRQDK---EYAYCTNYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 728

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN++VAIACY+G
Sbjct: 729  MGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVAIACYTG 788

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMN S+++RGFFRS+FFRSY+D E K     +E F +P R+   GMR+  YDK
Sbjct: 789  YNQEDSVIMNASAVERGFFRSVFFRSYKDAESKGMGDQEEQFEKPSRTTCQGMRNAIYDK 848

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDG+  PG RVSG+DV+IGKT   P + DE +G   RYT+RD S  LR+SETG+VDQV
Sbjct: 849  LDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTKRYTKRDASTFLRNSETGIVDQV 908

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+
Sbjct: 909  MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIII 968

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V  IS  L + GY +RG E 
Sbjct: 969  NPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEV 1028

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFG
Sbjct: 1029 MYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1088

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC IAHGA+ FL+ERLF+ SD YRVHVC  CG+IAIANL+ N+FEC+GCKNKT I 
Sbjct: 1089 EMERDCQIAHGAAQFLRERLFEVSDPYRVHVCNFCGIIAIANLRNNTFECKGCKNKTQIS 1148

Query: 1155 QVHIPYACKLLFQELMAMAIAPRML 1179
            Q+ +PYA KLLFQELM+M IAPR++
Sbjct: 1149 QIRLPYAAKLLFQELMSMNIAPRLM 1173


>gi|324120658|dbj|BAJ78720.1| RNA polymerase II second largest subunit [Neocolochelyna itoi]
          Length = 1175

 Score = 1634 bits (4231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 790/1181 (66%), Positives = 940/1181 (79%), Gaps = 21/1181 (1%)

Query: 10   EQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            E  Q ++ED EE   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  
Sbjct: 5    EDDQYDDEDAEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQ 64

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            I+++ E+QH  G+  +    + K  F QIYLSKP   E DG  + + P  ARLRNLTYSA
Sbjct: 65   IDLQAEAQHTSGEIENPVRHLLK--FEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSA 122

Query: 127  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            PLYVD+TK ++K   D E+  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP
Sbjct: 123  PLYVDITKTIVK---DAEDPVETQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECP 178

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
             D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY AE+RS  E  +RP ST++V
Sbjct: 179  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWV 237

Query: 247  RMLSRTSA--KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM 304
             M++++ A  K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +M
Sbjct: 238  NMMAKSGASIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            ME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFC
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFC 357

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR 
Sbjct: 358  ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRL 417

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+AS
Sbjct: 418  YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 477

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS 
Sbjct: 478  TLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQ 537

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-V 602
              PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D +
Sbjct: 538  PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDII 597

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDL 662
             +EV ++RDIR +E+RIYTD GR  RPL IVE Q LL+KKR I  L++R+   + GW  L
Sbjct: 598  VSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGQNLLLKKRHIDMLKERDY-TNYGWQVL 656

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
            VA G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP++ILGVCASIIP
Sbjct: 657  VASGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPAMILGVCASIIP 713

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+L
Sbjct: 714  FPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFREL 773

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F +P
Sbjct: 774  PAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKP 833

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDH 900
             R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+T+RD 
Sbjct: 834  TRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPETDDELDSATKRFTKRDA 893

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QE
Sbjct: 894  STFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 953

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNIS 1019
            DMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  IS
Sbjct: 954  DMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKIS 1013

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
              L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL R
Sbjct: 1014 TLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVR 1073

Query: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK 1139
            QP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  CGLIAIANL+ 
Sbjct: 1074 QPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRN 1133

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++ 
Sbjct: 1134 NTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|324120680|dbj|BAJ78731.1| RNA polymerase II second largest subunit [Ctenocephalides felis]
          Length = 1175

 Score = 1634 bits (4230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 790/1184 (66%), Positives = 945/1184 (79%), Gaps = 20/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E+  +E+++EE   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDVDEEQYREDDEEEISTELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPAIDLQAEAQHTSGEIENPPR--YVLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK +I    DG++  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTIIM---DGKDPVETQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   K+A+ AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAFKAEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFV+Q Q VAL++IG RGA  GVT+DKRIKYA+EILQKEMLPHVG  
Sbjct: 295  QEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMTTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE + LL+KKR I  L++R+   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENRTLLLKKRHIDMLKERDY-TNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LVA G +EYIDT EEET MI+M+ +DL Q R +   AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QVLVASGVVEYIDTLEEETVMIAMSPDDLRQERAY---AYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSETKRMGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P+R    GMR+  YDKLD+DG+  PG RVSG+DVIIGKT   P + DE +G   R+T+
Sbjct: 831  EKPNRQTCQGMRNALYDKLDEDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTKRHTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EG+ PDII+NPHAIPSRMTIG LIECI GK+ A+ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGLMPDIIINPHAIPSRMTIGHLIECIQGKLGANKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 LRSNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|307182559|gb|EFN69752.1| DNA-directed RNA polymerase II subunit RPB2 [Camponotus floridanus]
          Length = 1178

 Score = 1633 bits (4228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 786/1180 (66%), Positives = 942/1180 (79%), Gaps = 21/1180 (1%)

Query: 10   EQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            E  Q ++ED EE   ++ QE  W +I+AYF+EKGLVRQQLDSFDEFI+ ++Q IV++S  
Sbjct: 8    EDDQYDDEDAEEISSKLWQEACWILINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQ 67

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            I+++ E+QH  G+  +    + K  F QIYLSKP   E DG  + + P  ARLRNLTYSA
Sbjct: 68   IDLQAEAQHTTGEIENPVRHLLK--FEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSA 125

Query: 127  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            PLYVD+TK ++K   DGE+  ETQ   K FIGK+PIMLRS YC L   S++DLTEL ECP
Sbjct: 126  PLYVDITKTIVK---DGEDPVETQ-HQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECP 181

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
             D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY AE+RS  E  +RP ST+++
Sbjct: 182  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWI 240

Query: 247  RMLSRTSA--KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM 304
             M++++ A  K  + GQ I A +PYI+ EIPI++VFRALGFVAD+DILEHI YDF D +M
Sbjct: 241  NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRDILEHIIYDFDDPEM 300

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            ME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFC
Sbjct: 301  MEMVKPSLDEAFVIQEQNVALNFIGTRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFC 360

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR 
Sbjct: 361  ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRL 420

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+AS
Sbjct: 421  YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 480

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS 
Sbjct: 481  TLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQ 540

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-V 602
              PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ TLR+LRR++D +
Sbjct: 541  PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDII 600

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDL 662
             +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R+   D GW +L
Sbjct: 601  VSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNND-GWQEL 659

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
            V  G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASIIP
Sbjct: 660  VGSGVVEYIDTLEEETVMIAMSPDDLKQDK---EYAYCTTYTHCEIHPAMILGVCASIIP 716

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+L
Sbjct: 717  FPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFREL 776

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY++ E K     +E F +P
Sbjct: 777  PAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKEAESKKIGDQEEQFEKP 836

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDH 900
             R    GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE      R+T+RD 
Sbjct: 837  SRLTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDA 896

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QE
Sbjct: 897  STFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 956

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNIS 1019
            DMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  IS
Sbjct: 957  DMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKIS 1016

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
              L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL R
Sbjct: 1017 TLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVR 1076

Query: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK 1139
            QP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  CGLIAIANL+ 
Sbjct: 1077 QPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRN 1136

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++
Sbjct: 1137 NTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLM 1176


>gi|383851705|ref|XP_003701372.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Megachile rotundata]
          Length = 1175

 Score = 1632 bits (4227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 788/1181 (66%), Positives = 941/1181 (79%), Gaps = 21/1181 (1%)

Query: 10   EQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            E  Q ++ED EE   ++ QE  W VI+AYF+EKGLVRQQLDSFDEFI+ ++Q IV++S  
Sbjct: 5    EDDQYDDEDAEEISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQ 64

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            I+++ E+QH  G+  +    + K  F QIYLSKP   E DG  + + P  ARLRNLTYSA
Sbjct: 65   IDLQAEAQHTSGEIENPVRHLLK--FEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSA 122

Query: 127  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            PLYVD+TK ++K   DGE+  ETQ   K FIGK+PIMLRS YC L   S++DLTEL ECP
Sbjct: 123  PLYVDITKTIVK---DGEDPIETQ-HQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECP 178

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
             D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY +E+RS  E  +RP ST+++
Sbjct: 179  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWI 237

Query: 247  RMLSRTSA--KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM 304
             M++++ A  K  + GQ I A +PYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +M
Sbjct: 238  NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            ME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFC
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFC 357

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR 
Sbjct: 358  ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRL 417

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+AS
Sbjct: 418  YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 477

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS 
Sbjct: 478  TLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQ 537

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-V 602
              PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ TLR+LRR++D +
Sbjct: 538  PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDII 597

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDL 662
             +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R+   D GW +L
Sbjct: 598  VSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNND-GWQEL 656

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
            V  G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP++ILGVCASIIP
Sbjct: 657  VGSGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPAMILGVCASIIP 713

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+L
Sbjct: 714  FPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFREL 773

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F +P
Sbjct: 774  PAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKP 833

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDH 900
             R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+T+RD 
Sbjct: 834  TRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDELDSTTKRFTKRDA 893

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QE
Sbjct: 894  STFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 953

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNIS 1019
            DMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  IS
Sbjct: 954  DMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKIS 1013

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
              L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL R
Sbjct: 1014 TLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVR 1073

Query: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK 1139
            QP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  CGLIAIANL+ 
Sbjct: 1074 QPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRN 1133

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1134 NTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|291190610|ref|NP_001167150.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
 gi|223648370|gb|ACN10943.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
          Length = 1174

 Score = 1632 bits (4227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 788/1184 (66%), Positives = 947/1184 (79%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E  Q +E+++E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  D     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHTSGEVEDPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK +IK   +GE+  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTIIK---EGEDQLQTQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP S+
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSS 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R     K  + GQ I +TLPYIR E+PIIIVFRALGFV+D+DILEHI YDF D
Sbjct: 235  IWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RIKYAKE+LQKE+LPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGVSQVLNRLT 480
            +R Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG    A   RAGVSQVLNRLT
Sbjct: 415  IRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+K+R I  L++RE   +  W
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +  +    AY  TY+HCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYSHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770  RELPAGINSIVAIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMRH  YDKLDDDGL  PG RVSGEDVIIGKT   P + DE      RYT+
Sbjct: 830  EKPTRETCSGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPETDDELDSTNRRYTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             +S  L + GY +RG E +YNG TGR++T+ IFLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1010 KVSNLLSEYGYHLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CGL+AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM+T
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT 1173


>gi|324120642|dbj|BAJ78712.1| RNA polymerase II second largest subunit [Reticulitermes speratus]
          Length = 1150

 Score = 1632 bits (4227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/1160 (68%), Positives = 933/1160 (80%), Gaps = 18/1160 (1%)

Query: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
             W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+  +     
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPR-- 58

Query: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
            Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK ++K   DGE+  
Sbjct: 59   YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK---DGEDPI 115

Query: 148  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
            ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 116  ETQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 174

Query: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRA 265
            M+TN VYVF  +   K+A+ AE+RS  E  +RP ST++V M++R   S K  + GQ I A
Sbjct: 175  MATNTVYVFSMKD-GKFAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIA 233

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
             LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL
Sbjct: 234  ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 293

Query: 326  DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 385
            ++IG RGA  GVT+DKRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRLLL ALG
Sbjct: 294  NFIGARGARPGVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 353

Query: 386  RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
            RR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL+ AIK K
Sbjct: 354  RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRIYAQKFIDRGKDFNLELAIKTK 413

Query: 446  TITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
             IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKP
Sbjct: 414  IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 473

Query: 505  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 564
            RQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN EEI+P
Sbjct: 474  RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 533

Query: 565  AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDY 623
            + I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+RIYTD 
Sbjct: 534  SAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDA 593

Query: 624  GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISM 683
            GR  RPL IVE   LL+KKR I  L++RE   + GW  LVA G +EYIDT EEET MI+M
Sbjct: 594  GRICRPLLIVEGGNLLLKKRHIDMLKEREY-NNYGWQVLVASGVVEYIDTLEEETVMIAM 652

Query: 684  TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
            + +DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 653  SPDDLRQDK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 709

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+GYNQEDS
Sbjct: 710  GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 769

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            VIMN S+++RGFFRS+FFR+Y+D E K     +E F +P R+   GMR+  YDKLDDDG+
Sbjct: 770  VIMNASAVERGFFRSVFFRAYKDAESKRIGDQEEQFEKPTRTTCQGMRNALYDKLDDDGI 829

Query: 864  APPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG+DV+IGKT   P ++DE +G   R+T+RD S  LR+SETG+VDQV+LT N+
Sbjct: 830  ISPGIRVSGDDVVIGKTITLPDTEDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNS 889

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+NPHAIP
Sbjct: 890  EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIP 949

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHT 1040
            SRMTIG LIEC+ GKV+++ G+ GDATPF D V V  IS  L + GYQ+RG E MYNGHT
Sbjct: 950  SRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHT 1009

Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
            GR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC
Sbjct: 1010 GRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDC 1069

Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1160
             IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKNKT I QV +PY
Sbjct: 1070 QIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPY 1129

Query: 1161 ACKLLFQELMAMAIAPRMLT 1180
            A KLLFQELMAM IAPR++ 
Sbjct: 1130 AAKLLFQELMAMNIAPRLMV 1149


>gi|340726257|ref|XP_003401477.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
            terrestris]
 gi|350425904|ref|XP_003494269.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
            impatiens]
          Length = 1175

 Score = 1632 bits (4225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 787/1181 (66%), Positives = 941/1181 (79%), Gaps = 21/1181 (1%)

Query: 10   EQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            E  Q ++ED EE   ++ QE  W VI+AYF+EKGLVRQQLDSFDEFI+ ++Q IV++S  
Sbjct: 5    EDDQYDDEDAEEISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQ 64

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            I+++ E+QH  G+  +    + K  F QIYLSKP   E DG  + + P  ARLRNLTYSA
Sbjct: 65   IDLQAEAQHTSGEIENPVRHLLK--FEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSA 122

Query: 127  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            PLYVD+TK ++K   DGE+  ETQ   K FIGK+PIMLRS YC L   S++DLTEL ECP
Sbjct: 123  PLYVDITKTIVK---DGEDPIETQ-HQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECP 178

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
             D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY +E+RS  E  +RP ST+++
Sbjct: 179  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWI 237

Query: 247  RMLSRTSA--KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM 304
             M++++ A  K  + GQ I A +PYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +M
Sbjct: 238  NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            ME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFC
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFC 357

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR 
Sbjct: 358  ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRL 417

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+AS
Sbjct: 418  YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 477

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS 
Sbjct: 478  TLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQ 537

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-V 602
              PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ TLR+LRR++D +
Sbjct: 538  PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDII 597

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDL 662
             +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R+   D GW +L
Sbjct: 598  VSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQTLLLKKRHIDMLKERDYNND-GWQEL 656

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
            V  G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP++ILGVCASIIP
Sbjct: 657  VGSGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPAMILGVCASIIP 713

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+L
Sbjct: 714  FPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFREL 773

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F +P
Sbjct: 774  PAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKP 833

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDH 900
             R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+T+RD 
Sbjct: 834  TRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDELDSTTKRFTKRDA 893

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QE
Sbjct: 894  STFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 953

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNIS 1019
            DMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  IS
Sbjct: 954  DMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKIS 1013

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
              L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL R
Sbjct: 1014 TLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVR 1073

Query: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK 1139
            QP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  CGLIAIANL+ 
Sbjct: 1074 QPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRN 1133

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++ 
Sbjct: 1134 NTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|324120660|dbj|BAJ78721.1| RNA polymerase II second largest subunit [Vespa analis insularis]
          Length = 1175

 Score = 1631 bits (4224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/1181 (66%), Positives = 940/1181 (79%), Gaps = 21/1181 (1%)

Query: 10   EQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            E  Q ++ED EE   ++ QE  W VI+AYF+EKGLVRQQLDSFDEFI+ ++Q IV++S  
Sbjct: 5    EDDQYDDEDAEEISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQ 64

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            I+++ E+QH  G+  +    + K  F QIYLSKP   E DG  + + P  ARLRNLTYSA
Sbjct: 65   IDLQAEAQHTSGEIENPVRHLLK--FEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSA 122

Query: 127  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            PLYVD+TK + K   DGE+  ETQ   K FIGK+PIMLRS YC L   S++DLTEL ECP
Sbjct: 123  PLYVDITKTIEK---DGEDPIETQ-HQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECP 178

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
             D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY AE+RS  E  +RP ST+++
Sbjct: 179  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWI 237

Query: 247  RMLSRTSA--KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM 304
             M++++ A  K  + GQ I A +PYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +M
Sbjct: 238  NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            ME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFC
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFC 357

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR 
Sbjct: 358  ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRL 417

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+AS
Sbjct: 418  YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 477

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS 
Sbjct: 478  TLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQ 537

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-V 602
              PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ TLR+LRR++D +
Sbjct: 538  PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDII 597

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDL 662
             +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R+   D GW +L
Sbjct: 598  VSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNND-GWQEL 656

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
            V  G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP++ILGVCASIIP
Sbjct: 657  VGSGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPAMILGVCASIIP 713

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+L
Sbjct: 714  FPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFREL 773

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F +P
Sbjct: 774  PAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKP 833

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDH 900
             R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+T+RD 
Sbjct: 834  TRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPETDDELDSTTKRFTKRDA 893

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QE
Sbjct: 894  STFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 953

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNIS 1019
            DMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  IS
Sbjct: 954  DMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKIS 1013

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
              L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL R
Sbjct: 1014 TLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVR 1073

Query: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK 1139
            QP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  CGLIAIANL+ 
Sbjct: 1074 QPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRN 1133

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1134 NTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|324120664|dbj|BAJ78723.1| RNA polymerase II second largest subunit [Inocellia japonica]
          Length = 1175

 Score = 1631 bits (4224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/1165 (67%), Positives = 931/1165 (79%), Gaps = 18/1165 (1%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            + QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH   +   
Sbjct: 21   LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSAEIET 80

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                 Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK +IK   D
Sbjct: 81   PPH--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK---D 135

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
            G++  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKVL
Sbjct: 136  GDDPIETQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVL 194

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSG 260
            IAQEKM+TN VYVF  +  +KYAY AE+RS  E  +RP S+++V M++R   + K  + G
Sbjct: 195  IAQEKMATNTVYVFSMKD-SKYAYKAEIRSCLEHSSRPTSSLWVNMMARGGQAIKKAAIG 253

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
            Q I A LPYIR EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ 
Sbjct: 254  QRIIAILPYIRQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 313

Query: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRLL
Sbjct: 314  QNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 373

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
            L ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL  
Sbjct: 374  LAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDL 433

Query: 441  AIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 499
            AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+G
Sbjct: 434  AIKTKMITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG 493

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN 
Sbjct: 494  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 553

Query: 560  EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELR 618
            EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+R
Sbjct: 554  EEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIR 613

Query: 619  IYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEET 678
            IYTD GR  RPL IVE   LL+KK  +  L+ RE   + GW  LVA G +EYIDT EEET
Sbjct: 614  IYTDAGRICRPLLIVENGNLLLKKSHVDMLKDREY-NNYGWQVLVASGVVEYIDTLEEET 672

Query: 679  TMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 738
             MI+M+  DL Q +   E AY +TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAM
Sbjct: 673  VMIAMSPEDLRQDK---ENAYCNTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM 729

Query: 739  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 798
            GKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+GY
Sbjct: 730  GKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGY 789

Query: 799  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 858
            NQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F +P R    GMR+  YDKL
Sbjct: 790  NQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAHYDKL 849

Query: 859  DDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVL 916
            DDDG+  PG RVSG+DV+IGKT   P ++DE +G   RYT+RD S  LR+SETG+VDQV+
Sbjct: 850  DDDGIISPGIRVSGDDVVIGKTIMLPENEDELEGTTKRYTKRDASTFLRNSETGVVDQVM 909

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+N
Sbjct: 910  LTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIIN 969

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETM 1035
            PHAIPSRMTIG LIECI GKV+++ G+ GDATPF D V V  IS  L + GYQ+RG E M
Sbjct: 970  PHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM 1029

Query: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1095
            YNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGE
Sbjct: 1030 YNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGE 1089

Query: 1096 MERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQ 1155
            MERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIANLK N+FEC+GCKNKT I Q
Sbjct: 1090 MERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLKNNTFECKGCKNKTQISQ 1149

Query: 1156 VHIPYACKLLFQELMAMAIAPRMLT 1180
            V +PYA KLLFQELMAM IAPR++ 
Sbjct: 1150 VRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|324120624|dbj|BAJ78703.1| RNA polymerase II second largest subunit [Nomadacris japonica]
          Length = 1173

 Score = 1631 bits (4223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/1166 (67%), Positives = 932/1166 (79%), Gaps = 18/1166 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE++ E+QH  G+  
Sbjct: 18   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTSGEIE 77

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+ KRV K   
Sbjct: 78   NPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDILKRVEKHK- 134

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
              EE  ET    K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKV
Sbjct: 135  --EEPVETLH-QKTFIGKIPIMLRSTYCLLSTLTDRDLTELNECPLDPGGYFIINGSEKV 191

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF  +   KYAY AE+RS  E  +RP ST++V M++R   S K  + 
Sbjct: 192  LIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAI 250

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A LPYI+ EIPIII FRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV+Q
Sbjct: 251  GQRIVAILPYIKQEIPIIIAFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQ 310

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT+++RIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 311  EQNVALNFIGTRGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 370

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL+
Sbjct: 371  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLE 430

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 431  LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 490

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 491  GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 550

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 551  LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREI 610

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE   LL+KKR I  L++R+  ++ GW  LVA+G +EYIDT EEE
Sbjct: 611  RIYTDAGRICRPLLIVENGSLLLKKRHIDRLKERDY-DNYGWQMLVAEGVVEYIDTLEEE 669

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T MI+M+++DL   R     AY  T+THCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 670  TVMIAMSLDDL---RHDKSYAYCSTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 726

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN++VAI CY+G
Sbjct: 727  MGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVAILCYTG 786

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMN S+++RGFFRS+FFRSY+D E K     +E F +P R    GMR+  YDK
Sbjct: 787  YNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDK 846

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDG+  PG RVSG+DV+IGKT   P ++DE +G   RYT+RD S  LR+SETG+VDQV
Sbjct: 847  LDDDGIISPGIRVSGDDVVIGKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQV 906

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+
Sbjct: 907  MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 966

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V  IS  L + GYQ+RG E 
Sbjct: 967  NPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISSLLQEYGYQLRGNEV 1026

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFG
Sbjct: 1027 MYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1086

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKNKT I 
Sbjct: 1087 EMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQIS 1146

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
            QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1147 QVRLPYAAKLLFQELMAMNIAPRLMV 1172


>gi|380024797|ref|XP_003696177.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Apis florea]
          Length = 1175

 Score = 1630 bits (4222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 786/1181 (66%), Positives = 941/1181 (79%), Gaps = 21/1181 (1%)

Query: 10   EQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            E+ Q ++ED EE   ++ QE  W VI+AYF+EKGLVRQQLDSFDEFI+ ++Q IV++S  
Sbjct: 5    EEDQYDDEDAEEISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQ 64

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            I+++ E+QH  G+  +    + K  F QIYLSKP   E DG  + + P  ARL NLTYSA
Sbjct: 65   IDLQAEAQHTSGEIENPVRHLLK--FEQIYLSKPTHWEKDGAPSPMMPNEARLXNLTYSA 122

Query: 127  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            PLYVD+TK ++K   DGE+  ETQ   K FIGK+PIMLRS YC L   S++DLTEL ECP
Sbjct: 123  PLYVDITKTIVK---DGEDPIETQ-HQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECP 178

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
             D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY +E+RS  E  +RP ST+++
Sbjct: 179  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWI 237

Query: 247  RMLSRTSA--KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM 304
             M++++ A  K  + GQ I A +PYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +M
Sbjct: 238  NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            ME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFC
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFC 357

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR 
Sbjct: 358  ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRL 417

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+AS
Sbjct: 418  YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 477

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS 
Sbjct: 478  TLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQ 537

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-V 602
              PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ TLR+LRR++D +
Sbjct: 538  PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDII 597

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDL 662
             +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R+   D GW +L
Sbjct: 598  VSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNND-GWQEL 656

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
            V  G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP++ILGVCASIIP
Sbjct: 657  VGSGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPAMILGVCASIIP 713

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+L
Sbjct: 714  FPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFREL 773

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F +P
Sbjct: 774  PAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKP 833

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDH 900
             R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+T+RD 
Sbjct: 834  TRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDELDSTTKRFTKRDA 893

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QE
Sbjct: 894  STFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 953

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNIS 1019
            DMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  IS
Sbjct: 954  DMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKIS 1013

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
              L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL R
Sbjct: 1014 TLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVR 1073

Query: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK 1139
            QP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  CGLIAIANL+ 
Sbjct: 1074 QPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRN 1133

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++ 
Sbjct: 1134 NTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|324120646|dbj|BAJ78714.1| RNA polymerase II second largest subunit [Gynaikothrips ficorum]
          Length = 1150

 Score = 1630 bits (4222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 786/1162 (67%), Positives = 938/1162 (80%), Gaps = 22/1162 (1%)

Query: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
             W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+     ET 
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTTGE----VETP 56

Query: 88   --YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE 145
              Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK +I++G D + 
Sbjct: 57   PRYLLKFEQIYLSKPTHWEKDGAPSAMMPNEARLRNLTYSAPLYVDITKTIIREGED-QV 115

Query: 146  VTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ 205
            VT+     K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKVLIAQ
Sbjct: 116  VTQN---PKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQ 172

Query: 206  EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYI 263
            EKM+TN VYVF  +   K+AY +E+RS  E  +RP ST++V M++R   S K  + GQ I
Sbjct: 173  EKMATNTVYVFAMKD-GKFAYKSEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRI 231

Query: 264  RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQV 323
             A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ Q V
Sbjct: 232  IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNV 291

Query: 324  ALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 383
            AL++IG RGA  GVT++KRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++HRLLL A
Sbjct: 292  ALNFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAA 351

Query: 384  LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIK 443
            LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL+ AIK
Sbjct: 352  LGRRELDDRDHYGNKRLDLAGPLLAFLFRALFKNLMKEVRMYAQKFIDRGKDFNLELAIK 411

Query: 444  AKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
             K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLA
Sbjct: 412  TKIITDGLRYSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLA 471

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN EEI
Sbjct: 472  KPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 531

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYT 621
            +P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+RIYT
Sbjct: 532  APSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYT 591

Query: 622  DYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMI 681
            D GR  RPL IVE  +LL+KKR+I  L++R+   + GW  LVA G +EYIDT EEET MI
Sbjct: 592  DAGRICRPLLIVENGQLLLKKRNIDQLKERDY-NNYGWQMLVASGVVEYIDTLEEETVMI 650

Query: 682  SMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741
            +M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 651  AMSPDDLNQDK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQ 707

Query: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801
            AMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+GYNQE
Sbjct: 708  AMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQE 767

Query: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 861
            DSVI+N ++++RGFFRS+F+RSY+D E K     +E F +P+RSN  GMR+  YDKLDDD
Sbjct: 768  DSVILNATAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPNRSNCQGMRNALYDKLDDD 827

Query: 862  GLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTT 919
            G+  PG RVSG+DV+IGKT   P + DE +G   R+T+RD S  LR+SETG+VDQV+LT 
Sbjct: 828  GIIAPGLRVSGDDVVIGKTITLPETDDELEGTTRRHTKRDASTFLRNSETGIVDQVMLTL 887

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
            N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+NPHA
Sbjct: 888  NSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHA 947

Query: 980  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNG 1038
            IPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V  IS  L + GYQ+RG E MYNG
Sbjct: 948  IPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNG 1007

Query: 1039 HTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1098
            HTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMER
Sbjct: 1008 HTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 1067

Query: 1099 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 1158
            DC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKNKT I QV +
Sbjct: 1068 DCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRL 1127

Query: 1159 PYACKLLFQELMAMAIAPRMLT 1180
            PYA KLLFQELM+M+IAPR++ 
Sbjct: 1128 PYAAKLLFQELMSMSIAPRLMV 1149


>gi|324120678|dbj|BAJ78730.1| RNA polymerase II second largest subunit [Panorpa takenouchii]
          Length = 1172

 Score = 1630 bits (4221), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 786/1166 (67%), Positives = 933/1166 (80%), Gaps = 18/1166 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+  
Sbjct: 17   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIDLQAEAQHTSGEIE 76

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
                  Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK +++   
Sbjct: 77   --TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTIVQ--- 131

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            DG++  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKV
Sbjct: 132  DGKDSVETQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV 190

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF  +   K+AY AE+RS  E  +RP ST++V M++R   S K  + 
Sbjct: 191  LIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAI 249

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV+Q
Sbjct: 250  GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDQEMMEMVKPSLDEAFVVQ 309

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT+DKRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 310  EQNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 369

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL+
Sbjct: 370  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDKGKDFNLE 429

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 430  LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRINSPIGRD 489

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 490  GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 549

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 550  LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREI 609

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE + LL+KKR +  L++R+   + GW  LVA G +EYIDT EEE
Sbjct: 610  RIYTDAGRICRPLLIVENRNLLLKKRHVDMLKERDY-NNYGWQVLVASGVVEYIDTLEEE 668

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 669  TVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 725

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TNY  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN IVAI CY+G
Sbjct: 726  MGKQAMGVYITNYHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINTIVAILCYTG 785

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F +P R +  GMR+  YDK
Sbjct: 786  YNQEDSVILNASAVERGFFRSVFYRSYKDSETKRLGDQEEQFEKPTRQSCQGMRNALYDK 845

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LD+DG+  PG RVSG+DVIIGKT   P + DE +G   R+T+RD S  LR+SETG+VDQV
Sbjct: 846  LDEDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTKRHTKRDASTFLRNSETGIVDQV 905

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+
Sbjct: 906  MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIII 965

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIECI GK+ A+ G+ GDATPF D V V  IS  L + GY +RG E 
Sbjct: 966  NPHAIPSRMTIGHLIECIQGKLGANKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEV 1025

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFG
Sbjct: 1026 MYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1085

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKNKT I 
Sbjct: 1086 EMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRSNTFECKGCKNKTQIS 1145

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
            QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1146 QVRLPYAAKLLFQELMSMNIAPRLMV 1171


>gi|156372267|ref|XP_001628960.1| predicted protein [Nematostella vectensis]
 gi|156215949|gb|EDO36897.1| predicted protein [Nematostella vectensis]
          Length = 1182

 Score = 1630 bits (4221), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/1194 (66%), Positives = 947/1194 (79%), Gaps = 22/1194 (1%)

Query: 2    MEDDYDYEEQH---QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQ 58
            M + YD+++     + E ED   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q
Sbjct: 1    MSNVYDHDDDAGYGEDEGEDITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQ 60

Query: 59   EIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 118
             IV++S +I+++ ESQH        A  + K  F QIYLSKP   E DG  + + P  AR
Sbjct: 61   RIVEDSPEIDLQAESQHMTSDTEIPARFVLK--FEQIYLSKPTHWEKDGAPSPMMPNEAR 118

Query: 119  LRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKD 178
            LRNLTYSAP YVD+TK  IK   D EE  +    +K+FIGK+PIMLRS+YC L    ++D
Sbjct: 119  LRNLTYSAPFYVDITKTRIK---DNEE-PQVTTHSKMFIGKIPIMLRSTYCLLNGLLDRD 174

Query: 179  LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQN 238
            LTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KY+Y AE+RS  E  +
Sbjct: 175  LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSKKD-SKYSYTAEIRSCLEHSS 233

Query: 239  RPPSTMFVRMLSRTSAKGGSS--GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC 296
            RP STM+V ML++ S+ G  S  GQ I  +LPYI+ EIPI+IVFRALGFVAD+DILEHI 
Sbjct: 234  RPTSTMWVSMLAKGSSGGRRSAIGQRIVGSLPYIKQEIPIMIVFRALGFVADRDILEHII 293

Query: 297  YDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLP 356
            YDF+D +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RIKYAKEILQKEMLP
Sbjct: 294  YDFEDQEMMEMVKPSLDEAFVIQEQNVALNFIGSRGARPGVTKERRIKYAKEILQKEMLP 353

Query: 357  HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR 416
            HVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LFR
Sbjct: 354  HVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFR 413

Query: 417  KLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQV 475
             L ++VR Y QK +D GKD N++ A+K K IT GL+YSLATGNWG Q  A   RAGVSQV
Sbjct: 414  NLMKEVRMYAQKFIDRGKDFNIELALKPKVITDGLRYSLATGNWGDQKKAHQARAGVSQV 473

Query: 476  LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 535
            LNRLT+ASTLSHLRRLNSPIGREGKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM
Sbjct: 474  LNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNTHWGMICPAETPEGHAVGLVKNLALM 533

Query: 536  VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 595
             YI+VGS   PILEF+EEW  EN EEI+P+ I  +TKIFVNGCWVGIHRDP+ L+ TLR+
Sbjct: 534  AYISVGSQPSPILEFMEEWTMENLEEITPSAINTSTKIFVNGCWVGIHRDPDQLMSTLRK 593

Query: 596  LRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESP 654
            LRRR+D + +EV +VRD R +E+RIY+D GR  RPL IVE Q+LL+KK  I  L++RE  
Sbjct: 594  LRRRMDIIVSEVSMVRDFREREIRIYSDAGRICRPLLIVENQKLLLKKNHIDQLKEREYN 653

Query: 655  EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLIL 714
            E   W +LVA G +EYID  EEET M++MT ++LV+      +AY  TYTHCEIHPS+IL
Sbjct: 654  E-YSWQELVANGIVEYIDVNEEETVMVAMTPDELVEK----GQAYCSTYTHCEIHPSMIL 708

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            GVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYPQKPLVTTR+M
Sbjct: 709  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSM 768

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E+L FR+LPAGINAIVAIA Y+GYNQEDSVIMN S+IDRG +RS+F+RSYRD+E K G  
Sbjct: 769  EYLRFRELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGLYRSVFYRSYRDQESKKGLD 828

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQA 892
             +E F +P R    GMR+ SYDKLD+DGL  PG RVSG+DVI+GKT   P + DE +G A
Sbjct: 829  QEETFEKPTRDAVQGMRNASYDKLDEDGLIAPGIRVSGDDVIVGKTVTLPDNDDELEGTA 888

Query: 893  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
             +Y+++D S  LR SETG+VDQV++T N +G +F K++VRSVR+PQIGDKF+SRHGQKGT
Sbjct: 889  RKYSKKDASTFLRPSETGIVDQVMVTINQEGFKFTKIKVRSVRVPQIGDKFASRHGQKGT 948

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
             G+TY QEDMP+T EG++PD+I+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D
Sbjct: 949  CGITYRQEDMPFTCEGLSPDVIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFND 1008

Query: 1013 -VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
             V V  IS+ L+  GY +RG E +Y+G TGR+L   +FLGPTYYQRLKHMVDDKIHSR R
Sbjct: 1009 AVNVQKISQLLNDYGYHLRGNEVLYSGFTGRKLNTQVFLGPTYYQRLKHMVDDKIHSRAR 1068

Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
            GP+QILTRQP EGRSRDGGLRFGEMERDCMIAHG++ FL ERLF+ SD Y  HVC  CGL
Sbjct: 1069 GPLQILTRQPMEGRSRDGGLRFGEMERDCMIAHGSAQFLNERLFEVSDPYSCHVCNLCGL 1128

Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTK 1185
            IAIANL+ N+FECRGCKNKT + ++ +PYA KLLFQELM+M+IAPRM+  +  K
Sbjct: 1129 IAIANLRNNTFECRGCKNKTQVSRIRMPYAAKLLFQELMSMSIAPRMMVCDPVK 1182


>gi|170042980|ref|XP_001849183.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
            quinquefasciatus]
 gi|167866385|gb|EDS29768.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
            quinquefasciatus]
          Length = 1176

 Score = 1630 bits (4220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 791/1185 (66%), Positives = 937/1185 (79%), Gaps = 21/1185 (1%)

Query: 6    YDYEEQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            Y+ E+    EEED EE   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV+
Sbjct: 2    YENEDGDHFEEEDPEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61

Query: 63   ESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
            +S  IE+  E+QH  G       T Y + F QIYLSKP   E DG  + + P  ARLRNL
Sbjct: 62   DSPAIELTAEAQHTTGDIE--TPTRYVLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNL 119

Query: 123  TYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 182
            TYSAPLYVD+TK  I +G D     ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL
Sbjct: 120  TYSAPLYVDITKTKIVEGQDP---VETQ-HQKTFIGKIPIMLRSTYCLLSQLTDRDLTEL 175

Query: 183  GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS 242
             ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY +E+RS  E  +RP S
Sbjct: 176  NECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTS 234

Query: 243  TMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ 300
            T++  M++R   S K  + GQ + A LPY++ EIPI+IVFRALGFVAD+DILEHI YDF 
Sbjct: 235  TLWCNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRDILEHIIYDFD 294

Query: 301  DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGT 360
            D +MME+++PSL+EAFV+Q Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG 
Sbjct: 295  DPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGV 354

Query: 361  GDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
             DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L +
Sbjct: 355  SDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLK 414

Query: 421  DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRL 479
            +VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRL
Sbjct: 415  EVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRL 474

Query: 480  TYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 539
            T+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+
Sbjct: 475  TFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS 534

Query: 540  VGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRR 599
            VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR+
Sbjct: 535  VGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQ 594

Query: 600  VD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG 658
            +D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL++K  +  L++R+   + G
Sbjct: 595  MDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLRKNHVDMLKERDY-NNYG 653

Query: 659  WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCA 718
            W  LVA G +EYIDT EEET MI+MT  DL Q +   E AY  TYTHCEIHP++ILGVCA
Sbjct: 654  WQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDK---EYAYCTTYTHCEIHPAMILGVCA 710

Query: 719  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 778
            SIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L 
Sbjct: 711  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLR 770

Query: 779  FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 838
            FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E 
Sbjct: 771  FRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKKIGDQEEQ 830

Query: 839  FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYT 896
            F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + D+  G   RY+
Sbjct: 831  FEKPNRQTCQGMRNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDLDGTTKRYS 890

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            +RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ 
Sbjct: 891  KRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQ 950

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTV 1015
            Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GK+ ++ G+ GDATPF D V V
Sbjct: 951  YRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATPFNDAVNV 1010

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1075
              IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQ
Sbjct: 1011 QKISTFLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 1070

Query: 1076 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIA 1135
            IL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIA
Sbjct: 1071 ILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIA 1130

Query: 1136 NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            N++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 NMRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|324120620|dbj|BAJ78701.1| RNA polymerase II second largest subunit [Galloisiana yuasai]
          Length = 1175

 Score = 1630 bits (4220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 787/1166 (67%), Positives = 935/1166 (80%), Gaps = 18/1166 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+  
Sbjct: 20   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIE 79

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK ++K   
Sbjct: 80   NPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTILK--- 134

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            + EE  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKV
Sbjct: 135  ENEEPVETQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKV 193

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF  +   K+A+ AE+RS  E  +RP ST++V M++R   S K  + 
Sbjct: 194  LIAQEKMATNTVYVFSMKD-GKFAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAI 252

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 253  GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 312

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 313  EQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 372

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL+
Sbjct: 373  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLE 432

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 433  LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 492

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 493  GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 552

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 553  LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREI 612

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IV+   LL+KKR I  L++RE   + GW  LVA G +EYIDT EEE
Sbjct: 613  RIYTDAGRICRPLLIVDGGNLLLKKRHIDMLKEREY-NNYGWQVLVASGVVEYIDTLEEE 671

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 672  TVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 728

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+G
Sbjct: 729  MGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTG 788

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMN S+++RGFFRS+FFRSY+D E K     +E F +P R    GMR+  YDK
Sbjct: 789  YNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRLTCQGMRNALYDK 848

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDG+  PG RVSG+DV+IGKT   P + DE +G   RYT+RD S  LR+SETG+VDQV
Sbjct: 849  LDDDGIISPGIRVSGDDVVIGKTITLPENDDELEGATKRYTKRDASTFLRNSETGIVDQV 908

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+
Sbjct: 909  MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIII 968

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V  IS  L + GYQ+RG E 
Sbjct: 969  NPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEI 1028

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            M+NGHTGR+++A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFG
Sbjct: 1029 MFNGHTGRKISAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1088

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC IAHGA+ FL+ERLF+ SD YR+H+C  CG+IAIAN++ N+FEC+GCKNKT I 
Sbjct: 1089 EMERDCQIAHGAAQFLRERLFEVSDPYRIHICNFCGIIAIANMRNNTFECKGCKNKTQIS 1148

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
            QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1149 QVKLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|332022245|gb|EGI62560.1| DNA-directed RNA polymerase II subunit RPB2 [Acromyrmex echinatior]
          Length = 1178

 Score = 1630 bits (4220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 787/1181 (66%), Positives = 941/1181 (79%), Gaps = 21/1181 (1%)

Query: 10   EQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            E  Q +EED+EE   ++ QE  W +I+AYF+EKGLVRQQLDSFDEFI+ ++Q IV++S  
Sbjct: 8    EDDQYDEEDKEEISSKLWQEACWILINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQ 67

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            IE++ E+QH  G+     + + K  F QIYLSKP   E DG  + + P  ARLRNLTYSA
Sbjct: 68   IELQAEAQHTTGEIEKPVKHLLK--FEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSA 125

Query: 127  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            PLYVD+TK + K   DGE+  ETQ   K FIGK+PIMLRS YC L   S++DLTEL ECP
Sbjct: 126  PLYVDITKTIEK---DGEDPVETQ-HQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECP 181

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
             D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY AE+RS  E  +RP ST+++
Sbjct: 182  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLEHSSRPTSTLWI 240

Query: 247  RMLSRTSA--KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM 304
             M++++ A  K  + GQ I A +PYI+ EIPI++VFRALGFVAD+DILEHI YDF D +M
Sbjct: 241  NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRDILEHIIYDFDDPEM 300

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            ME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFC
Sbjct: 301  MEMVKPSLDEAFVIQEQNVALNFIGTRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFC 360

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR 
Sbjct: 361  ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRL 420

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+AS
Sbjct: 421  YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 480

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS 
Sbjct: 481  TLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQ 540

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-V 602
              PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ TLR+LRR++D +
Sbjct: 541  PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDII 600

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDL 662
             +EV +VRDIR +E+RIYTD GR SRPL IVE Q LL++ R I  L++R+   D GW +L
Sbjct: 601  VSEVSMVRDIRDREIRIYTDAGRISRPLLIVEGQNLLLQTRHINMLKERDYNND-GWQEL 659

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
            V  G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASIIP
Sbjct: 660  VGSGVVEYIDTLEEETVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPAMILGVCASIIP 716

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+L
Sbjct: 717  FPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFREL 776

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY++ E K     +E F +P
Sbjct: 777  PAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKESESKKIGDQEEQFEKP 836

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDH 900
             R    GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE      R+T+RD 
Sbjct: 837  SRLTCSGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDA 896

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QE
Sbjct: 897  STFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 956

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNIS 1019
            DMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  IS
Sbjct: 957  DMPFSSEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKIS 1016

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
              L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL R
Sbjct: 1017 TLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVR 1076

Query: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK 1139
            QP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  CGLIAIANL+ 
Sbjct: 1077 QPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRN 1136

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++T
Sbjct: 1137 NTFECKGCKNKTQIAQIRLPYAAKLLFQELMAMNIAPRLMT 1177


>gi|291241363|ref|XP_002740582.1| PREDICTED: DNA directed RNA polymerase II polypeptide B-like
            [Saccoglossus kowalevskii]
          Length = 1175

 Score = 1628 bits (4216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/1184 (67%), Positives = 948/1184 (80%), Gaps = 23/1184 (1%)

Query: 8    YEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YE++ +  +EDE +EIT    QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YEQEDEIYDEDESDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  IE++ E+ H   +      T Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPPIELQAEATHTTIEVE--VPTRYILKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK ++K   +G+E  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKTIVK---EGDEPQETQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R     +  + GQ I A LPYIR EIPI+IVFRALGFV+D+DILEHI YDF D
Sbjct: 235  LWVHMMARGGQGVRKSAIGQRIVAALPYIRQEIPIMIVFRALGFVSDRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RIKYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRHLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + IT GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRIYAQKFIDKGKDFNLELAIKTRIITDGLKYSLATGNWGEQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGQAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+ + I +ATKIFVNGCWVGIHRDPE L+ TL++LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAASAINEATKIFVNGCWVGIHRDPEQLMNTLKKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV +VRDIR KE+RIYTD GR  RPL IVEKQ+LL+KK+ I  L++RE   +  W
Sbjct: 595  DIIVSEVSMVRDIREKEIRIYTDAGRICRPLLIVEKQKLLLKKKHIDMLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +  +     Y  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGM----GYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAIA Y+GYNQEDSVIMN S+++RGFFRS+F+RSYRD+E K G   +E F
Sbjct: 770  RELPAGINSIVAIASYTGYNQEDSVIMNLSAVERGFFRSVFYRSYRDQESKKGLDQEEVF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +PDR +  GMR   YDKLDDDG+  PG+RVSG+DV+IGKT   P + DE +G   R+T+
Sbjct: 830  EKPDRESCQGMRMAVYDKLDDDGIIAPGSRVSGDDVLIGKTVTLPENDDELEGTTRRFTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  +R +ETG+VDQV+++ N +G +F K+++RSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDSSTFMRRTETGIVDQVMVSINQEGYKFCKIKIRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDTVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  LH+ GY +RG E +YNG TGR+L   IF+GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1010 KISNLLHEYGYHLRGNEVLYNGFTGRKLGTQIFIGPTYYQRLKHMVDDKIHSRARGPLQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVHVC  CGLIAIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHVCNLCGLIAIAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FECRGCKNKT I Q+ +PYACKLLFQELM+M+IAPRM+ 
Sbjct: 1130 LRNNTFECRGCKNKTQISQIRLPYACKLLFQELMSMSIAPRMMV 1173


>gi|91090964|ref|XP_974653.1| PREDICTED: similar to AGAP003648-PA [Tribolium castaneum]
 gi|270013197|gb|EFA09645.1| hypothetical protein TcasGA2_TC011771 [Tribolium castaneum]
          Length = 1175

 Score = 1628 bits (4216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 786/1165 (67%), Positives = 934/1165 (80%), Gaps = 18/1165 (1%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            + QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+  +
Sbjct: 21   LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGELEN 80

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
             +   Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK ++K   D
Sbjct: 81   PSR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK---D 135

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
            GE+  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKVL
Sbjct: 136  GEDPIETQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 194

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSG 260
            IAQEKM+TN VYVF  +   KYA+ +E+RS  E  +RP ST++V M++R   + K  + G
Sbjct: 195  IAQEKMATNTVYVFSMKD-GKYAFKSEIRSCLEHSSRPTSTLWVNMMARGGQAIKKAAIG 253

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
            Q I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF+D +MME+++PSL+EAFVIQ 
Sbjct: 254  QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQE 313

Query: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            Q +AL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRLL
Sbjct: 314  QNIALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 373

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
            L ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL  
Sbjct: 374  LAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDL 433

Query: 441  AIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 499
            AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+G
Sbjct: 434  AIKTKLITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG 493

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN 
Sbjct: 494  KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 553

Query: 560  EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELR 618
            EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+R
Sbjct: 554  EEIAPSAIANATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIR 613

Query: 619  IYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEET 678
            IYTD GR  RPL IVE   LL+KKR I  L++RE   + GW  LVA G +EYIDT EEET
Sbjct: 614  IYTDAGRICRPLLIVENGTLLLKKRHIDMLKEREY-NNYGWQVLVASGVVEYIDTLEEET 672

Query: 679  TMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 738
             MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAM
Sbjct: 673  VMIAMSPDDLRQEK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM 729

Query: 739  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 798
            GKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAIACY+GY
Sbjct: 730  GKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAIACYTGY 789

Query: 799  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 858
            NQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F +P R    GMR+  YDKL
Sbjct: 790  NQEDSVILNASAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKL 849

Query: 859  DDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVL 916
            DDDG+  PG RVSG+DV+IGKT   P + DE  G   R+T+RD S  LR+SETG+VDQV+
Sbjct: 850  DDDGIIAPGIRVSGDDVVIGKTMTLPENDDELDGTTKRFTKRDASTFLRNSETGVVDQVM 909

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDM +T EG+TPDII+N
Sbjct: 910  LTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMIFTCEGLTPDIIIN 969

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETM 1035
            PHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  IS  L + GYQ+RG E M
Sbjct: 970  PHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM 1029

Query: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1095
            YNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGE
Sbjct: 1030 YNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGE 1089

Query: 1096 MERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQ 1155
            MERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I Q
Sbjct: 1090 MERDCQISHGAAQFLRERLFEVSDQYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQ 1149

Query: 1156 VHIPYACKLLFQELMAMAIAPRMLT 1180
            V +PYA KLLFQELM+M IAPR++ 
Sbjct: 1150 VRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|403182531|gb|EJY57456.1| AAEL017213-PA [Aedes aegypti]
          Length = 1176

 Score = 1628 bits (4215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 791/1185 (66%), Positives = 934/1185 (78%), Gaps = 21/1185 (1%)

Query: 6    YDYEEQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            ++ E+    EEED EE   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV+
Sbjct: 2    FENEDGDHFEEEDPEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 61

Query: 63   ESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
            +S  IE+  E+QH  G       T Y + F QIYLSKP   E DG  + + P  ARLRNL
Sbjct: 62   DSPAIELTAEAQHTSGDIE--TPTRYVLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNL 119

Query: 123  TYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 182
            TYSAPLYVD+TK  I +G D     ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL
Sbjct: 120  TYSAPLYVDITKTKIVEGQDP---VETQ-HQKTFIGKIPIMLRSTYCLLSQLTDRDLTEL 175

Query: 183  GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS 242
             ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY +E+RS  E  +RP S
Sbjct: 176  NECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTS 234

Query: 243  TMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ 300
            T++  M++R   S K  + GQ + A LPY++ EIPI+IVFRALGFVAD+DILEHI YDF 
Sbjct: 235  TLWCNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRDILEHIIYDFD 294

Query: 301  DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGT 360
            D +MME+++PSL+EAFV+Q Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG 
Sbjct: 295  DPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGV 354

Query: 361  GDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
             DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPL+  LFR LF+ L +
Sbjct: 355  SDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMALLFRGLFKSLVK 414

Query: 421  DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRL 479
            +VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRL
Sbjct: 415  EVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRL 474

Query: 480  TYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 539
            T+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+
Sbjct: 475  TFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS 534

Query: 540  VGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRR 599
            VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L  TLR+LRR+
Sbjct: 535  VGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLTATLRKLRRQ 594

Query: 600  VD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG 658
            +D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL++K  +  L+ R+   + G
Sbjct: 595  MDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLRKNHVDMLKDRDY-NNYG 653

Query: 659  WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCA 718
            W  LVA G +EYIDT EEET MI+MT  DL Q +   E AY  TYTHCEIHP++ILGVCA
Sbjct: 654  WQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDK---EYAYCTTYTHCEIHPAMILGVCA 710

Query: 719  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 778
            SIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L 
Sbjct: 711  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLR 770

Query: 779  FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 838
            FR+LPAGIN IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E 
Sbjct: 771  FRELPAGINTIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKKIGDQEEQ 830

Query: 839  FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYT 896
            F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + D+  G   RYT
Sbjct: 831  FEKPNRQTCQGMRNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDLDGTTKRYT 890

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            +RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ 
Sbjct: 891  KRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQ 950

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTV 1015
            Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIECI GK+ ++ G+ GDATPF D V V
Sbjct: 951  YRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATPFNDAVNV 1010

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1075
              IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQ
Sbjct: 1011 QKISTFLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 1070

Query: 1076 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIA 1135
            IL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIA
Sbjct: 1071 ILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIA 1130

Query: 1136 NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            N++ N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1131 NMRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMAMNIAPRLMV 1175


>gi|340382420|ref|XP_003389717.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amphimedon
            queenslandica]
          Length = 1175

 Score = 1627 bits (4214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 791/1175 (67%), Positives = 939/1175 (79%), Gaps = 24/1175 (2%)

Query: 17   EDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
            +DE++EI+    QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  +E++ E
Sbjct: 11   DDEDDEISPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPPLELQAE 70

Query: 73   SQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
            +Q++    SD     Y + F QIYLSKP   E DG+   L P  ARLRNLTYSAPLYVDV
Sbjct: 71   AQYD---DSDTPPK-YSLKFEQIYLSKPTHWEKDGKAVYLMPNEARLRNLTYSAPLYVDV 126

Query: 133  TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 192
             K +I +  D +E        K FIGK+PIMLRS+YC L Q +++DL EL ECP D GGY
Sbjct: 127  KKTIIYEDEDSKE----DPHPKTFIGKIPIMLRSTYCLLSQLTDRDLNELNECPLDPGGY 182

Query: 193  FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR- 251
            FIINGSEKVLIAQEKM+TN V+VF K++ +KYA+ AE+RS  E+ +RP ST++V  LSR 
Sbjct: 183  FIINGSEKVLIAQEKMATNTVHVFSKKE-SKYAHTAEIRSYIENSSRPVSTLWVSQLSRG 241

Query: 252  -TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRP 310
             T  K  + GQ I ATLPYI+ EIPI+IVFRALGFV+D+DILEHI YDF D +MME+L+P
Sbjct: 242  GTGVKKSAIGQKIVATLPYIKQEIPIMIVFRALGFVSDRDILEHIIYDFTDIEMMEMLKP 301

Query: 311  SLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAY 370
            SL+EAFVIQ Q VAL++IG RGA  GVTR+KRIKYAK+ILQKE+LPHVG   FCET+KAY
Sbjct: 302  SLDEAFVIQEQNVALNFIGVRGAKPGVTREKRIKYAKDILQKELLPHVGVSSFCETRKAY 361

Query: 371  YFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 430
            + GY++HRLL  ALGRR  DDRDHYGNKRLDLAGPLL  LFR LFR LT++VR Y QK +
Sbjct: 362  FLGYMVHRLLQAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEVRLYAQKFI 421

Query: 431  DNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLR 489
            D G+D NL+ AIK KTIT GL+YSLATGNWG Q  A  TRAGVSQVLNRLT+ASTLSHLR
Sbjct: 422  DKGRDFNLELAIKTKTITDGLRYSLATGNWGDQKKAHQTRAGVSQVLNRLTFASTLSHLR 481

Query: 490  RLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE 549
            RLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILE
Sbjct: 482  RLNSPIGRDGKLARPRQLHNTHWGMICPAETPEGHAVGLVKNLALMGYISVGSQPAPILE 541

Query: 550  FLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGV 608
            FLEEW  EN EEI+P+VI  +TKIFVNG WVGIHR+PE L+ TLRRLRR++D + +EV +
Sbjct: 542  FLEEWSMENLEEITPSVIANSTKIFVNGNWVGIHREPEHLMTTLRRLRRQMDIIVSEVSM 601

Query: 609  VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFI 668
            VRDIR +E+RI+TD GR  RPL IVE Q+LL+KK  I  L++RE   +  W DLVA G +
Sbjct: 602  VRDIREREIRIFTDAGRICRPLLIVENQKLLLKKHHIQMLKEREY-NNASWQDLVAGGVV 660

Query: 669  EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            EYID  EEET MI+MT +DL         +Y  TYTHCEIHP++ILGVCASIIPFPDHNQ
Sbjct: 661  EYIDCLEEETVMIAMTPDDL---STEGGASYCSTYTHCEIHPAMILGVCASIIPFPDHNQ 717

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGINA
Sbjct: 718  SPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINA 777

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAIA Y+GYNQEDSVIMN S+IDRG FRS+F+RSY+DEE K G   +E F +P R    
Sbjct: 778  IVAIASYTGYNQEDSVIMNASAIDRGLFRSVFYRSYKDEESKRGFDQEEVFEKPTRDTCA 837

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRH 906
            GMR+ +YDKLD+DG+  PG RVSG D IIGKT   P + DE +G   RY +RD S  LR 
Sbjct: 838  GMRNAAYDKLDEDGIIAPGLRVSGNDAIIGKTISLPENDDELEGAPKRYQKRDASTFLRA 897

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            SETG++DQV+L+ N DG +F K+RVRSVR+PQIGDKF+SRHGQKGT G+TY QEDMP+T 
Sbjct: 898  SETGIIDQVMLSLNQDGYKFCKIRVRSVRVPQIGDKFASRHGQKGTCGITYRQEDMPFTC 957

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKC 1025
            EG++PD+I+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS+ L++ 
Sbjct: 958  EGLSPDVIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISELLNEY 1017

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
             Y +RG E +YNGHTGR+L   +FLGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGR
Sbjct: 1018 NYHLRGNEVLYNGHTGRKLNTQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPMEGR 1077

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECR 1145
            SRDGGLRFGEMERDC IAHGA+ FL ERL+  SDAY++H+C  CGLIAIANL+ NSFECR
Sbjct: 1078 SRDGGLRFGEMERDCQIAHGAAQFLHERLYTVSDAYKIHLCNLCGLIAIANLQTNSFECR 1137

Query: 1146 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            GCKNKT I Q+ IPYACKLLFQELM+M+IAPR++T
Sbjct: 1138 GCKNKTQISQIEIPYACKLLFQELMSMSIAPRIMT 1172


>gi|391332506|ref|XP_003740675.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Metaseiulus occidentalis]
          Length = 1178

 Score = 1627 bits (4213), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 790/1166 (67%), Positives = 929/1166 (79%), Gaps = 18/1166 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            ++ QE  W VISAYF+EKGLVRQQLDSFDEFIQ ++Q+IV+++  IE++ E+ H+ G   
Sbjct: 18   DLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQKIVEDTPPIELQAEATHSSGIIE 77

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
                T Y++ F QIYLSKP   E DG    + P  ARLRNLTYSAPLYVD+ K VI+   
Sbjct: 78   Q--PTKYQVKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDIIKTVIR--- 132

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            DGE+  ETQ   K FIGK+PIMLRSSYC L   S++DL+EL ECP D GGYFIINGSEKV
Sbjct: 133  DGEDPVETQ-HQKTFIGKIPIMLRSSYCLLNGLSDRDLSELNECPLDPGGYFIINGSEKV 191

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF+ +   KYA+ AE RS  E  +RP ST++V M++R  +  K  S 
Sbjct: 192  LIAQEKMATNTVYVFQMKD-GKYAFKAECRSCIEHSSRPTSTLWVNMMARGGSGVKKASI 250

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF+D +MME+++PSL+EAFVIQ
Sbjct: 251  GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 310

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT+  RIKYA+EILQKEMLPHVG  DFCETKKAYY GY++HRL
Sbjct: 311  EQNVALNFIGSRGARPGVTKANRIKYAREILQKEMLPHVGVSDFCETKKAYYLGYMVHRL 370

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPL+  LFR LF+ LT++VR + QK +D GKD NL+
Sbjct: 371  LLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRGLFKNLTKEVRMFAQKFIDKGKDFNLE 430

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK + IT GLKYSLATGNWG Q  A   R GVSQVLNRLTYASTLSHLRR+NSPIGR+
Sbjct: 431  LAIKTRIITDGLKYSLATGNWGDQKKAHQARPGVSQVLNRLTYASTLSHLRRVNSPIGRD 490

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 491  GKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMSYISVGSQPSPILEFLEEWSMEN 550

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I +ATKIFVNGCWVGIHRDPE L+ TL++LRR++D + +EV +VRDIR +E+
Sbjct: 551  LEEIAPSAIAEATKIFVNGCWVGIHRDPEQLMLTLQKLRRQMDIIVSEVSMVRDIRDREI 610

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE Q+LL+K+  I  L++RE      W DLVA G +EYIDT EEE
Sbjct: 611  RIYTDAGRICRPLLIVENQKLLLKRHHIDKLKERECSY-YSWQDLVASGVVEYIDTLEEE 669

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T M++MT +DL Q +     AY  TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 670  TVMLAMTPDDLTQDK---ALAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSA 726

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYP KPL TTR+ME+L FR+LPAGINAIVAI  Y+G
Sbjct: 727  MGKQAMGVYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLRFRELPAGINAIVAIMSYTG 786

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVI+N S++DRGFFRS+F+RSY+D E K     +E F +P R    GMR+  YDK
Sbjct: 787  YNQEDSVILNASAVDRGFFRSVFYRSYKDSENKRMGDQEETFEKPTRETCQGMRNAIYDK 846

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDG+  PGTRVSG+DVIIGKT   P + D+      RY++RD S  LR+SETG+VDQV
Sbjct: 847  LDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLDSTNKRYSKRDASTFLRNSETGIVDQV 906

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +LT N+DG +F K+RVRSVRIPQIGDKF+SRHGQKGT G+TY QEDMP+TVEG+TPDII+
Sbjct: 907  MLTINSDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGVTYRQEDMPFTVEGLTPDIII 966

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIEC+ GKVA++ G+ GDATPF D V V  IS  L + GY +RG E 
Sbjct: 967  NPHAIPSRMTIGHLIECLQGKVASNKGEIGDATPFNDAVNVQKISNILMEYGYHLRGNEV 1026

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFG
Sbjct: 1027 MYNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1086

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC I+HGA+ FL+ERLF  SD YR H+C  CGLIAIANL+ N FEC+GC+NKT I 
Sbjct: 1087 EMERDCQISHGAAQFLRERLFFASDPYRTHICNICGLIAIANLRNNIFECKGCRNKTQIS 1146

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
            Q+ +PYACKLLFQELM+M IAPRM+ 
Sbjct: 1147 QITLPYACKLLFQELMSMNIAPRMMV 1172


>gi|242009479|ref|XP_002425513.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
 gi|212509368|gb|EEB12775.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
          Length = 1175

 Score = 1626 bits (4211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 785/1184 (66%), Positives = 942/1184 (79%), Gaps = 22/1184 (1%)

Query: 8    YEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YEE+ Q E +++  EI+    QE  W VI++YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YEEEDQYENDEDAGEISSELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   TPIIDLQAEAQHASGEIENPPH--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK++IK+G D  E        K FIGK+PIMLRS+YC L   +++DLTEL 
Sbjct: 120  YSAPLYVDITKKIIKEGEDPIETKHQ----KSFIGKIPIMLRSTYCLLSGLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   K+AY AE+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKAEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RIKYAKEILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAKEILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR + QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMFAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKN+ALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNIALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE  +LL+KK  +  L++RE   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGQLLLKKNHVNMLKEREY-NNFGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QVLVASGVVEYIDTLEEETVMIAMSPDDLRQDK---EYAYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VL+YP KPLV TR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPHKPLVITRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FRS+F+RSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFYRSYKDSESKRIGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P+R    GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE +G   RYT+
Sbjct: 831  EKPNRQTCQGMRNAMYDKLDDDGIIAPGVRVSGDDVIIGKTITLPDNDDELEGATKRYTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG VDQV++T N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDASTFLRNSETGCVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+++ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISTLLQEYGYQLRGNELMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1131 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|345495600|ref|XP_003427537.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2 [Nasonia vitripennis]
          Length = 1174

 Score = 1626 bits (4211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/1183 (66%), Positives = 936/1183 (79%), Gaps = 21/1183 (1%)

Query: 8    YEEQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
            Y E+   E+ED EE   ++ QE  W VI+AYF+EKGLVRQQLDSFDEFI+ ++Q IV++S
Sbjct: 2    YAEEDHYEDEDTEEISSKVWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDS 61

Query: 65   ADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 124
              IE++ E+QH  G+  +   T + + F QIYLSKP   E DG  + + P  ARLRNLTY
Sbjct: 62   PQIELQAEAQHTTGEIEN--PTKHLVKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY 119

Query: 125  SAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 184
            SAPLYVD+TK + K   DGEE  ETQ   K FIGK+PIMLRS YC L   S++DLTEL E
Sbjct: 120  SAPLYVDITKTIEK---DGEEPIETQ-HQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNE 175

Query: 185  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTM 244
            CP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYA+  E+RS  E  +RP ST+
Sbjct: 176  CPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKCEIRSCLEHSSRPTSTL 234

Query: 245  FVRMLSRTSA--KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDT 302
            ++ M++++ A  K  + GQ I A LPYIR EIPI+IVFRALGFVAD+DILEHI YDF D 
Sbjct: 235  WINMMAKSGANIKKSAIGQRIVAVLPYIRQEIPIMIVFRALGFVADRDILEHIIYDFDDP 294

Query: 303  QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
            +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+DKRIKYAKEILQKE LPHVG  D
Sbjct: 295  EMMEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKDKRIKYAKEILQKETLPHVGISD 354

Query: 363  FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
            FCETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++V
Sbjct: 355  FCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEV 414

Query: 423  RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTY 481
            R Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+
Sbjct: 415  RMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHLARAGVSQVLNRLTF 474

Query: 482  ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
            ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VG
Sbjct: 475  ASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVG 534

Query: 542  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
            S   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ TLR+LRR++D
Sbjct: 535  SQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMD 594

Query: 602  -VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWH 660
             + +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L+ R+   D GW 
Sbjct: 595  IIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVENQTLLLKKRHIDMLKDRDYNND-GWQ 653

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASI 720
            +LVA G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASI
Sbjct: 654  ELVASGVVEYIDTLEEETVMIAMSPDDLKQEK---EYAYCSTYTHCEIHPAMILGVCASI 710

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQ  M  + MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR
Sbjct: 711  IPFPDHNQSPRNTYQVNMFPKVMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFR 770

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
            +LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F 
Sbjct: 771  ELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSETKKFGDQEEQFE 830

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRR 898
            +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+T+R
Sbjct: 831  KPSRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTMTLPENDDELDSTTKRFTKR 890

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y 
Sbjct: 891  DASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYR 950

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDN 1017
            QEDMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  
Sbjct: 951  QEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQK 1010

Query: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1077
            IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL
Sbjct: 1011 ISTLLCEYGYQLRGNEIMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1070

Query: 1078 TRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANL 1137
             RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL
Sbjct: 1071 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 1130

Query: 1138 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            + N+FEC+GCKNKT I QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1131 RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRLMV 1173


>gi|324120662|dbj|BAJ78722.1| RNA polymerase II second largest subunit [Protohermes grandis]
          Length = 1175

 Score = 1626 bits (4210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 787/1171 (67%), Positives = 934/1171 (79%), Gaps = 18/1171 (1%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            E+   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH 
Sbjct: 15   EEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT 74

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
             G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK +
Sbjct: 75   SGEIENPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTI 132

Query: 137  IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 196
            +K   +GE+  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIIN
Sbjct: 133  VK---EGEDPIETQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIIN 188

Query: 197  GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSA 254
            GSEKVLIAQEKM+TN VYVF  +   KYAY AE+RS  E  +RP ST++V M++R   + 
Sbjct: 189  GSEKVLIAQEKMATNTVYVFAMKD-GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQAI 247

Query: 255  KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEE 314
            K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+E
Sbjct: 248  KKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 307

Query: 315  AFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGY 374
            AFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY
Sbjct: 308  AFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 367

Query: 375  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
            ++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GK
Sbjct: 368  MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDRGK 427

Query: 435  DVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
            D NL  AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NS
Sbjct: 428  DFNLDLAIKTKMITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRINS 487

Query: 494  PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 553
            PIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEE
Sbjct: 488  PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 547

Query: 554  WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDI 612
            W  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDI
Sbjct: 548  WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDI 607

Query: 613  RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYID 672
            R +E+RIYTD GR  RPL IVE  +LL+KKR I  L++RE   + GW  LVA G +EYID
Sbjct: 608  RDREIRIYTDSGRICRPLLIVENGKLLLKKRHIDMLKEREY-NNYGWQVLVASGVVEYID 666

Query: 673  TEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
            T EEET MI+M+  DL   R   E AY  T+THCEIH ++ILGVCASIIPFPDHNQSPRN
Sbjct: 667  TLEEETVMIAMSPEDL---RHEKEYAYCTTHTHCEIHAAMILGVCASIIPFPDHNQSPRN 723

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI
Sbjct: 724  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAI 783

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
             CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F +P R    GMR+
Sbjct: 784  LCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRN 843

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETG 910
              YDKLDDDG+  PG RVSG+DV+IGKT   P ++DE +G   R+T+RD S  LR+SETG
Sbjct: 844  AHYDKLDDDGIISPGIRVSGDDVVIGKTITLPENEDELEGTTKRFTKRDASTFLRNSETG 903

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+T
Sbjct: 904  VVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLT 963

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQM 1029
            PDII+NPHAIPSRMTIG LIECI GKV+++ G+ GDATPF D V V  IS  L + GY +
Sbjct: 964  PDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYHL 1023

Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1089
            RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDG
Sbjct: 1024 RGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1083

Query: 1090 GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN 1149
            GLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKN
Sbjct: 1084 GLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1143

Query: 1150 KTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            KT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120644|dbj|BAJ78713.1| RNA polymerase II second largest subunit [Thrips palmi]
          Length = 1150

 Score = 1626 bits (4210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 784/1160 (67%), Positives = 932/1160 (80%), Gaps = 18/1160 (1%)

Query: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
             W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+        
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIE--TPPR 58

Query: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
            Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK ++K   +GEE  
Sbjct: 59   YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK---EGEEPI 115

Query: 148  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
            ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 116  ETQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 174

Query: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRA 265
            M+TN VYVF  +   K+AY  E+RS  E  +RP ST++V M++R   S K  + GQ I A
Sbjct: 175  MATNTVYVFSMKD-GKFAYKCEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIA 233

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
             LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL
Sbjct: 234  ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 293

Query: 326  DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 385
            ++IG RGA  GVT++KRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++HRLLL ALG
Sbjct: 294  NFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALG 353

Query: 386  RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
            RR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL+ AIK K
Sbjct: 354  RRELDDRDHYGNKRLDLAGPLLAFLFRALFKNLMKEVRMYAQKFIDRGKDFNLELAIKTK 413

Query: 446  TITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
             IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKP
Sbjct: 414  IITDGLRYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 473

Query: 505  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 564
            RQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN EEI+P
Sbjct: 474  RQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 533

Query: 565  AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDY 623
            + I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+RIYTD 
Sbjct: 534  SAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDA 593

Query: 624  GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISM 683
            GR  RPL IVE  +LL+KKR+I  L++R+   + GW  LVA G +EYIDT EEET MI+M
Sbjct: 594  GRICRPLLIVENGQLLLKKRNIDQLKERDY-NNYGWQMLVASGVVEYIDTLEEETVMIAM 652

Query: 684  TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
            + +DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 653  SPDDLRQDK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 709

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+Y+TNY  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+GYNQEDS
Sbjct: 710  GVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 769

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            VI+N ++++RGFFRS+F+RSY+D E K     +E F +P+R+N  GMR+  YDKLDDDG+
Sbjct: 770  VILNATAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPNRNNCQGMRNAIYDKLDDDGI 829

Query: 864  APPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG+DV+IGKT   P + D+  G   R+T+RD S  LR+SETG+VDQV+LT N+
Sbjct: 830  IAPGLRVSGDDVVIGKTITLPETDDDLDGTTRRHTKRDASTFLRNSETGIVDQVMLTLNS 889

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+NPHAIP
Sbjct: 890  EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGVQYRQEDMPFTCEGLTPDIIINPHAIP 949

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHT 1040
            SRMTIG LIEC+ GKV+++ G+ GDATPF D V V  IS+ L   GY +RG E MYNGHT
Sbjct: 950  SRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISQLLQDYGYHLRGNEVMYNGHT 1009

Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
            GR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC
Sbjct: 1010 GRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDC 1069

Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1160
             IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKNKT I QV +PY
Sbjct: 1070 QIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPY 1129

Query: 1161 ACKLLFQELMAMAIAPRMLT 1180
            A KLLFQELM+M IAPR++ 
Sbjct: 1130 AAKLLFQELMSMNIAPRLMV 1149


>gi|417413545|gb|JAA53095.1| Putative rna polymerase i second largest subunit, partial [Desmodus
            rotundus]
          Length = 1144

 Score = 1625 bits (4209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 786/1155 (68%), Positives = 933/1155 (80%), Gaps = 19/1155 (1%)

Query: 33   SAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISF 92
            S+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++ E+QH  G+  +     Y + F
Sbjct: 1    SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPR--YLLKF 58

Query: 93   GQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDF 152
             QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK VIK   +GEE  +TQ  
Sbjct: 59   EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQTQ-H 114

Query: 153  TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH 212
             K FIGK+PIMLRS+YC L   +++DL EL ECP D GGYFIINGSEKVLIAQEKM+TN 
Sbjct: 115  QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNT 174

Query: 213  VYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLPYI 270
            VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+R    AK  + GQ I ATLPYI
Sbjct: 175  VYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYI 233

Query: 271  RTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGK 330
            + E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++IG 
Sbjct: 234  KQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGS 293

Query: 331  RGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 390
            RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  D
Sbjct: 294  RGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELD 353

Query: 391  DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSG 450
            DRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK +D GKD NL+ AIK + I+ G
Sbjct: 354  DRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 413

Query: 451  LKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 509
            LKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN
Sbjct: 414  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 473

Query: 510  SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ 569
            + WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN EEISPA I  
Sbjct: 474  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 533

Query: 570  ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSR 628
            ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV ++RDIR +E+RIYTD GR  R
Sbjct: 534  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 593

Query: 629  PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            PL IVEKQ+LL+KKR I  L++RE   +  W DLVA G +EYIDT EEET M++MT +DL
Sbjct: 594  PLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDL 652

Query: 689  VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
             +     E AY  TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+T
Sbjct: 653  QEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 708

Query: 749  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
            N+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+
Sbjct: 709  NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 768

Query: 809  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
            S++DRGFFRS+F+RSY+++E K G   +E F +P R    GMRH  YDKLDDDGL  PG 
Sbjct: 769  SAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGV 828

Query: 869  RVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
            RVSG+DVIIGKT   P ++DE +    RYT+RD S  LR SETG+VDQV++T N +G +F
Sbjct: 829  RVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKF 888

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
             K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTI
Sbjct: 889  CKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTI 948

Query: 987  GQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 1045
            G LIEC+ GKV+A+ G+ GDATPF D V V  IS  L   GY +RG E +YNG TGR++T
Sbjct: 949  GHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKIT 1008

Query: 1046 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 1105
            + IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHG
Sbjct: 1009 SQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHG 1068

Query: 1106 ASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLL 1165
            A+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++ECRGC+NKT I  V +PYACKLL
Sbjct: 1069 AAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLL 1128

Query: 1166 FQELMAMAIAPRMLT 1180
            FQELM+M+IAPRM++
Sbjct: 1129 FQELMSMSIAPRMMS 1143


>gi|321470077|gb|EFX81055.1| hypothetical protein DAPPUDRAFT_102782 [Daphnia pulex]
          Length = 1174

 Score = 1625 bits (4209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 786/1184 (66%), Positives = 941/1184 (79%), Gaps = 21/1184 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E   ++E+ EE   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDQDEDPIEDEDGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  I+++ E+QH+ G+  +     Y + F QIYLSKP   E DG    + P  ARLRNLT
Sbjct: 62   SPAIDLQAEAQHSSGEVENPPR--YVLKFEQIYLSKPTHWEKDGAPTAMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK V K   +GEE  ETQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTVHK---EGEEQVETQ-HQKTFIGKIPIMLRSTYCLLNGMNDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   K+AY  E+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKFAYKTEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R     K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF+D
Sbjct: 235  LYVNMLARGGQGIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPL+  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRALFKTLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV +VRDI+ +E+RIYTD GR  RPL IVE  +LL+KKR +  L+QRE   +  W
Sbjct: 595  DIIVSEVSMVRDIQDREIRIYTDAGRICRPLLIVENCKLLLKKRHVDMLKQREYI-NFSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             +LVA G +EYIDT EEET MI+M+  DL Q +    +AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QELVATGVVEYIDTLEEETAMIAMSPEDLRQGK----DAYCTTYTHCEIHPAMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VL YPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLQYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN++VAI  Y+GYNQEDSVIMN S+++RGFFRS+FFRSY+D+E K     +E F
Sbjct: 770  RELPAGINSVVAILSYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDQESKRSADQEETF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R +  GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + D+ +    ++++
Sbjct: 830  EKPFRDHCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDDLESTTKKFSK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LRHSETG+VDQV+LT NA+G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890  RDASTFLRHSETGIVDQVMLTLNAEGNKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V 
Sbjct: 950  RQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GY +RG E +YNGHTGR+L A +FLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1010 KISNLLQEYGYHLRGNEVLYNGHTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 1069

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CG+IA+AN
Sbjct: 1070 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLCGIIAVAN 1129

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            L+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1130 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1173


>gi|324120676|dbj|BAJ78729.1| RNA polymerase II second largest subunit [Stenopsyche marmorata]
          Length = 1174

 Score = 1625 bits (4209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 786/1166 (67%), Positives = 931/1166 (79%), Gaps = 18/1166 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+  
Sbjct: 18   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHASGEIE 77

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
                  Y + F QIYLSKP   E DG  A + P  ARLRNLTYSAPLYVD+TK ++K   
Sbjct: 78   TPPH--YLLKFEQIYLSKPTHWEKDGAAAAMMPNEARLRNLTYSAPLYVDITKTIVK--- 132

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            +GE+  ETQ   K FIGK+PIMLRS+YC L    ++DLTEL ECP D GGYFIINGSEKV
Sbjct: 133  EGEDPIETQ-HQKTFIGKIPIMLRSTYCLLNGLIDRDLTELNECPLDPGGYFIINGSEKV 191

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF  +   K+A+ AE+RS  E  +RP ST++V M+SR   S K  + 
Sbjct: 192  LIAQEKMATNTVYVFSMKD-GKFAFKAEIRSCLEHSSRPTSTLWVNMMSRGGQSIKKNAI 250

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A +PYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 251  GQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 310

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 311  EQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 370

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL+
Sbjct: 371  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLE 430

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 431  LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 490

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 491  GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 550

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 551  LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREI 610

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IV+   LL+KKR I  L++R+   +  W  LVA G +EYIDT EEE
Sbjct: 611  RIYTDAGRICRPLLIVDNGILLLKKRHIDMLKERDL-NNYSWQVLVASGVVEYIDTLEEE 669

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T MI+M+ +DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 670  TVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 726

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+G
Sbjct: 727  MGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTG 786

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F +P R+   GMR+  YDK
Sbjct: 787  YNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRTTCQGMRNALYDK 846

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDG+  PG RVSG+DV+IGKT   P + DE  G   RYT+RD S  LR+SETG+VDQV
Sbjct: 847  LDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDGTTKRYTKRDASTFLRNSETGIVDQV 906

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+
Sbjct: 907  MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIII 966

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIECI GKV+++ G+ GDATPF D V V  IS  L + GY +RG E 
Sbjct: 967  NPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEV 1026

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFG
Sbjct: 1027 MYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1086

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC IAHGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKNKT I 
Sbjct: 1087 EMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQIS 1146

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
            QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1147 QVRLPYAAKLLFQELMSMNIAPRLMV 1172


>gi|324120614|dbj|BAJ78698.1| RNA polymerase II second largest subunit [Isonychia japonica]
          Length = 1150

 Score = 1625 bits (4208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 783/1161 (67%), Positives = 932/1161 (80%), Gaps = 18/1161 (1%)

Query: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETI 87
             W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+        
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIE--TPPR 58

Query: 88   YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
            Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK V+K   +GE+  
Sbjct: 59   YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVK---EGEDPI 115

Query: 148  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
            +TQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 116  DTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 174

Query: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRT--SAKGGSSGQYIRA 265
            M+TN VYVF  +   K+AY AE+RS  E  +RP ST++V M++R+  S K  + GQ I A
Sbjct: 175  MATNTVYVFAMKD-GKFAYKAEIRSCQEHSSRPTSTLWVNMMARSGQSIKKSAIGQRIIA 233

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
             LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL
Sbjct: 234  ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 293

Query: 326  DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 385
            ++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRLLL AL 
Sbjct: 294  NFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALS 353

Query: 386  RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
            RR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL+ AIK K
Sbjct: 354  RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTK 413

Query: 446  TITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
             IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKP
Sbjct: 414  IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 473

Query: 505  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 564
            RQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN EEI+P
Sbjct: 474  RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 533

Query: 565  AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDY 623
            + I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+RIYTD 
Sbjct: 534  SAILDATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDA 593

Query: 624  GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISM 683
            GR  RPL IVE   LL+KKR I  L+ R+   + GW  LV+ G +EYIDT EEET MI+M
Sbjct: 594  GRICRPLLIVENSNLLLKKRHIDMLKDRDY-NNYGWQFLVSSGVVEYIDTLEEETVMIAM 652

Query: 684  TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
            +  DL   +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 653  SPEDLHHDK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 709

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN++VAIACY+GYNQEDS
Sbjct: 710  GVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDS 769

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            VIMN S+++RGFFRS+F+RSY+D+E K     +E F +P+R+   GMR+  YDKLDDDG+
Sbjct: 770  VIMNASAVERGFFRSIFYRSYKDQESKRIGDQEEQFEKPNRATCQGMRNAIYDKLDDDGI 829

Query: 864  APPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG+DVIIGKT   P + DE +G   RYT+RD S  LR+SETG+VDQV++T N+
Sbjct: 830  IAPGVRVSGDDVIIGKTITLPENDDELEGTTKRYTKRDASTFLRNSETGIVDQVMITLNS 889

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDI++NPHAIP
Sbjct: 890  EGYKFSKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIVINPHAIP 949

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHT 1040
            SRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L + GY +RG E MYNGHT
Sbjct: 950  SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISSLLQEYGYHLRGNEVMYNGHT 1009

Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
            GR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC
Sbjct: 1010 GRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDC 1069

Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1160
             I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKNKT I QV +PY
Sbjct: 1070 QISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPY 1129

Query: 1161 ACKLLFQELMAMAIAPRMLTK 1181
            A KLLFQELM+M IAPR++ +
Sbjct: 1130 AAKLLFQELMSMNIAPRLMVE 1150


>gi|347970296|ref|XP_313416.4| AGAP003648-PA [Anopheles gambiae str. PEST]
 gi|333468866|gb|EAA08858.4| AGAP003648-PA [Anopheles gambiae str. PEST]
          Length = 1175

 Score = 1624 bits (4205), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 786/1166 (67%), Positives = 928/1166 (79%), Gaps = 18/1166 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE+  E+QH+ G+  
Sbjct: 20   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHSSGEIE 79

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            +   T Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK  + +G 
Sbjct: 80   N--PTRYLLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKLVEGQ 137

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            D     ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSEKV
Sbjct: 138  DP---VETQ-HQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKV 193

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF  +   KYAY  E+RS  E  +RP ST++V M++R   S K  + 
Sbjct: 194  LIAQEKMATNTVYVFSMKD-GKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAI 252

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ + A LPY++ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV+Q
Sbjct: 253  GQRVIAILPYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQ 312

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 313  EQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 372

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL+
Sbjct: 373  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLE 432

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 433  LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 492

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 493  GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 552

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 553  LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREI 612

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE   LL++K  I  L+ R+   + GW  LVA G +EYIDT EEE
Sbjct: 613  RIYTDAGRICRPLLIVENGSLLLRKNHIDMLKDRDY-NNYGWQVLVASGVVEYIDTLEEE 671

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T MI+MT  DL Q +   E AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 672  TVMIAMTPYDLKQDK---EYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 728

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+G
Sbjct: 729  MGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTG 788

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F +P+R    GMR+  YDK
Sbjct: 789  YNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPNRQTCQGMRNALYDK 848

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LD+DG+  PG RVSG+DV+IGKT   P + D+  G   RYT+RD S  LR+SETG+VDQV
Sbjct: 849  LDEDGIIAPGLRVSGDDVVIGKTITLPETDDDLDGTTKRYTKRDGSTFLRNSETGIVDQV 908

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+
Sbjct: 909  MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 968

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIECI GK+ ++ G+ GDATPF D V V  IS  L + GY +RG E 
Sbjct: 969  NPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEV 1028

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFG
Sbjct: 1029 MYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1088

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKNKT I 
Sbjct: 1089 EMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQIS 1148

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
            QV +PYA KLLFQELMAM IAPR++ 
Sbjct: 1149 QVKLPYAAKLLFQELMAMNIAPRLMV 1174


>gi|324120672|dbj|BAJ78727.1| RNA polymerase II second largest subunit [Lucidina biplagiata]
          Length = 1175

 Score = 1621 bits (4198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 781/1166 (66%), Positives = 934/1166 (80%), Gaps = 18/1166 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+  
Sbjct: 20   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEVE 79

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            +     Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK ++K   
Sbjct: 80   NPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK--- 134

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            DGEE  ETQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D GGYFIINGSEKV
Sbjct: 135  DGEEPIETQH-QKTFIGKIPIMLRSTYCLLSGLTDRDLMELNECPLDPGGYFIINGSEKV 193

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF  +   KYA+ +E+RS  E  +RP ST++V M++R   + K  + 
Sbjct: 194  LIAQEKMATNTVYVFAMKD-GKYAFKSEIRSCLEHSSRPTSTLWVNMMARGGQAIKKAAI 252

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A LPYI+ EIP+++VFRALGFVAD+DILEHI YDF+D +MME+++PSL+EAFVIQ
Sbjct: 253  GQRIIAILPYIKQEIPVMVVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 312

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 313  EQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 372

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD NL 
Sbjct: 373  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLD 432

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 433  LAIKTKLITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 492

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 493  GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 552

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 553  LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREI 612

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE  +LL+KKR I  L++RE   + GW  LVA+G +EYIDT EEE
Sbjct: 613  RIYTDAGRICRPLLIVENGQLLLKKRHIDMLKEREY-NNYGWQVLVAQGVVEYIDTLEEE 671

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T MI+++ +DL Q +   + AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 672  TVMIAISPDDLRQEK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 728

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAIACY+G
Sbjct: 729  MGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAIACYTG 788

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F +P R    GMR+  YDK
Sbjct: 789  YNQEDSVILNASAVERGFFRSVFYRSYKDSECKRIGDQEEQFEKPTRQTCQGMRNALYDK 848

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDG+  PG RVSG+DV+IGKT   P + DE  G   ++++RD S  LR+SETG+VDQV
Sbjct: 849  LDDDGIISPGIRVSGDDVVIGKTMTLPENDDELDGTTKKFSKRDASTFLRNSETGVVDQV 908

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDM +T EGITPDII+
Sbjct: 909  MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMIFTCEGITPDIII 968

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  IS  L + GY +RG E 
Sbjct: 969  NPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEV 1028

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFG
Sbjct: 1029 MYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1088

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC I+HGA+ FL+ERLF+ SD YR+H+C  CGLIAIANL+ N+FEC+GCKNKT I 
Sbjct: 1089 EMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQIS 1148

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
            Q+ +PYA KLLFQELM+M IAPR++ 
Sbjct: 1149 QIRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|324120656|dbj|BAJ78719.1| RNA polymerase II second largest subunit [Metylophorus sp. E-43]
          Length = 1176

 Score = 1617 bits (4188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 780/1166 (66%), Positives = 929/1166 (79%), Gaps = 16/1166 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI++YF+EKGLVRQQLDSFDEFIQ ++Q IV++S  I+++ E+QH  G+  
Sbjct: 19   ELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIE 78

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
                  Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK ++K   
Sbjct: 79   HPPH--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVK--- 133

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            +GEE  ETQ   K FIGK+PIMLRS+YC L   +++DLTEL ECP D GGYFIINGSEKV
Sbjct: 134  EGEEPIETQH-QKSFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKV 192

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF  +   KYAY  E+RS  E  +RP ST++V M++R   S K  + 
Sbjct: 193  LIAQEKMATNTVYVFSMKD-GKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAI 251

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 252  GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 311

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 312  EQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 371

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR + QK +D GKD NL+
Sbjct: 372  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMFAQKFIDRGKDFNLE 431

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 432  LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 491

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 492  GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 551

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 552  LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREI 611

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE  +LL+K+  +  L++RE   + GW  LVA G +EYIDT EEE
Sbjct: 612  RIYTDAGRICRPLLIVENGQLLLKRNHVNMLKEREF-NNYGWQVLVASGVVEYIDTLEEE 670

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T MI+M ++DL   +   E AY  T+THCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 671  TVMIAMNLDDLRGGQ-EKEYAYCSTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 729

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TNY  RMDTLA+VL+YP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+G
Sbjct: 730  MGKQAMGVYITNYHVRMDTLAHVLFYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTG 789

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVI+N S+++RG+FRS F+RSY+D E K     +E F +P R    GMR+  YDK
Sbjct: 790  YNQEDSVILNASAVERGYFRSCFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAMYDK 849

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDG+  PG RVSG+DV+IGKT   P + D+ +G   R+T+RD S  LR+SETG VDQV
Sbjct: 850  LDDDGIITPGVRVSGDDVVIGKTITLPDTDDDLEGTTRRFTKRDASTFLRNSETGCVDQV 909

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            +LT NA+G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+TPDII+
Sbjct: 910  MLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIII 969

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L + GY +RG E 
Sbjct: 970  NPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEL 1029

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFG
Sbjct: 1030 MYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1089

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIANL+ N+FEC+GCKNKT I 
Sbjct: 1090 EMERDCQISHGAAQFLRERLFEVSDPYRIHVCNLCGLIAIANLRNNTFECKGCKNKTQIS 1149

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
            QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1150 QVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|344323318|gb|AEN14442.1| DNA-dependent RNA polymerase II second largest subunit [Lentinula
            edodes]
          Length = 1228

 Score = 1610 bits (4170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 774/1217 (63%), Positives = 954/1217 (78%), Gaps = 42/1217 (3%)

Query: 2    MEDDYDYEEQH---QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQ 58
            ++D Y +++ +     EE+D+  EITQED W VIS++FE+KGLVRQQLDSFDEF+QNTMQ
Sbjct: 8    IQDSYAFDDPNFGMDDEEDDQYSEITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQ 67

Query: 59   EIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 118
            E+VDE+AD+ +  + QH+ G++ D     Y+I FGQIYLS+P +TE+DG    +FP+ AR
Sbjct: 68   ELVDENADLILDQQDQHS-GREGDMTRR-YEIRFGQIYLSRPTVTEADGSVVPVFPQEAR 125

Query: 119  LRNLTYSAPLYVDVTKRVIKKGHDGEEV-------TETQD----FTKVFIGKVPIMLRSS 167
            LRNLTYSAPLY+++ K+V+    D + V       TE  D     TKV+IGKVPIMLRS+
Sbjct: 126  LRNLTYSAPLYIEMKKKVMVGREDPDGVPGDMAWETENDDGPENSTKVWIGKVPIMLRST 185

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
            +C L   +++DL +L ECPYD GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+   ++
Sbjct: 186  FCILRGLADQDLYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFL 245

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AE+RS  E   +  S   V+M  R   +  + G  ++AT+PYI+ +IPI +VFR LG ++
Sbjct: 246  AEIRSAVEKGGKTISQFQVKMFHRGQER--AMGNVMKATIPYIKVDIPIWVVFRGLGVIS 303

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
            D+DILEHICYD QD QM+E+L+P ++E FVIQ+++VALD+IG RG T G++R+KRI+YA+
Sbjct: 304  DRDILEHICYDMQDAQMLEMLKPCIDEGFVIQDREVALDFIGNRGTTTGLSREKRIRYAQ 363

Query: 348  EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
            EILQKEMLPHV   +  E+KKA++FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL
Sbjct: 364  EILQKEMLPHVSMAEGSESKKAFFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLL 423

Query: 408  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAA 466
              LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  + 
Sbjct: 424  ANLFRMLFRKLTKDVYRYMQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSM 483

Query: 467  GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAC 526
             ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQAC
Sbjct: 484  SSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQAC 543

Query: 527  GLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP 586
            GLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HR+P
Sbjct: 544  GLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTPTMTKVFVNGVWMGVHREP 603

Query: 587  EMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 646
              LVKT+R+LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L+++K+ I 
Sbjct: 604  ANLVKTIRKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKKHIK 663

Query: 647  AL--QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH-----PEE-- 697
             L   Q +   +  W  LV  G +E +D EEEET MISMT  DL  +RL      P E  
Sbjct: 664  WLLNGQNDEGSEFKWEHLVKNGIVELLDAEEEETVMISMTPEDLENSRLQQQGIDPHEND 723

Query: 698  ------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 745
                          A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI
Sbjct: 724  GEFDPAARLKAGISAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGI 783

Query: 746  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 805
            Y+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVI
Sbjct: 784  YLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVI 843

Query: 806  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 865
            MNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDKL+DDGL  
Sbjct: 844  MNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIA 903

Query: 866  PGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADG 923
            PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++G
Sbjct: 904  PGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEG 963

Query: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
             +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI++NPHAIPSR
Sbjct: 964  QKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSR 1023

Query: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043
            MTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E M++GHTGR+
Sbjct: 1024 MTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSMFLKQKGYQSRGLEVMFHGHTGRK 1083

Query: 1044 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1103
            L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+
Sbjct: 1084 LQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIS 1143

Query: 1104 HGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1163
            HG + FLKERLF+ SDAYRVHVCE CGL AIANLKK SFECR CKNKT + Q++IPYA K
Sbjct: 1144 HGIAGFLKERLFEASDAYRVHVCEICGLTAIANLKKQSFECRACKNKTAVSQLYIPYAAK 1203

Query: 1164 LLFQELMAMAIAPRMLT 1180
            LLFQEL +M IA R+ T
Sbjct: 1204 LLFQELQSMNIAARLYT 1220


>gi|194745991|ref|XP_001955468.1| GF16238 [Drosophila ananassae]
 gi|190628505|gb|EDV44029.1| GF16238 [Drosophila ananassae]
          Length = 1176

 Score = 1610 bits (4169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 777/1168 (66%), Positives = 925/1168 (79%), Gaps = 22/1168 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE++ E+QH  G+  
Sbjct: 21   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE-- 78

Query: 82   DFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
               ET   + + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK    K
Sbjct: 79   --VETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---TK 133

Query: 140  GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
              +G++  ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSE
Sbjct: 134  NVEGQDPIETQH-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSE 192

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGG 257
            KVLIAQEKM+TN VYVF  +   KYA+  E+RS  E  +RP ST++V M++R S   K  
Sbjct: 193  KVLIAQEKMATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKS 251

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV
Sbjct: 252  AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 311

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            +Q Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++H
Sbjct: 312  VQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVH 371

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD N
Sbjct: 372  RLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFN 431

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L+ AIK   IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIG
Sbjct: 432  LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIG 491

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  
Sbjct: 492  RDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 551

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLK 615
            EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +
Sbjct: 552  ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDR 611

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            E+RIYTD GR  RPL IVE   LL+KK  +  L++R+   +  W  LVA G +EYIDT E
Sbjct: 612  EIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLE 670

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EET MI+M+  DL Q +   + AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 671  EETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 727

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY
Sbjct: 728  SAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCY 787

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            +GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E+F +P R    GMR+  Y
Sbjct: 788  TGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHY 847

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
            DKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+ +RD S  LR+SETG+VD
Sbjct: 848  DKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVD 907

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+ PDI
Sbjct: 908  QVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDI 967

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGF 1032
            I+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATPF D V V  IS  L + GY +RG 
Sbjct: 968  IINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGN 1027

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 1028 EVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 1087

Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152
            FGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  CGLIAIANL+ N+FEC+GCKNKT 
Sbjct: 1088 FGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQ 1147

Query: 1153 IVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|195145272|ref|XP_002013620.1| GL24239 [Drosophila persimilis]
 gi|198452242|ref|XP_001358686.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
 gi|194102563|gb|EDW24606.1| GL24239 [Drosophila persimilis]
 gi|198131848|gb|EAL27829.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
          Length = 1176

 Score = 1608 bits (4163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 777/1168 (66%), Positives = 924/1168 (79%), Gaps = 22/1168 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE++ E+QH  G+  
Sbjct: 21   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE-- 78

Query: 82   DFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
               ET   + + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK    K
Sbjct: 79   --VETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---TK 133

Query: 140  GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
              +G +  ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSE
Sbjct: 134  NVEGLDPVETQH-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSE 192

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGG 257
            KVLIAQEKM+TN VYVF  +   KYA+  E+RS  E  +RP ST++V M++R S   K  
Sbjct: 193  KVLIAQEKMATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKS 251

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV
Sbjct: 252  AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 311

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            +Q Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++H
Sbjct: 312  VQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVH 371

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD N
Sbjct: 372  RLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFN 431

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L+ AIK   IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIG
Sbjct: 432  LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIG 491

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  
Sbjct: 492  RDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 551

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLK 615
            EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +
Sbjct: 552  ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDR 611

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            E+RIYTD GR  RPL IVE   LL+KK  +  L++R+   +  W  LVA G +EYIDT E
Sbjct: 612  EIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLE 670

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EET MI+M+  DL Q +   + AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 671  EETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 727

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY
Sbjct: 728  SAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCY 787

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            +GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E+F +P R    GMR+  Y
Sbjct: 788  TGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHY 847

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
            DKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+ +RD S  LR+SETG+VD
Sbjct: 848  DKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVD 907

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+ PDI
Sbjct: 908  QVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDI 967

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGF 1032
            I+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATPF D V V  IS  L + GY +RG 
Sbjct: 968  IINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGN 1027

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 1028 EVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 1087

Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152
            FGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  CGLIAIANL+ N+FEC+GCKNKT 
Sbjct: 1088 FGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQ 1147

Query: 1153 IVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|336376994|gb|EGO05329.1| hypothetical protein SERLA73DRAFT_101102 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336390144|gb|EGO31287.1| DNA-directed RNA polymerase II, subunit 2 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1209

 Score = 1608 bits (4163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 775/1195 (64%), Positives = 937/1195 (78%), Gaps = 43/1195 (3%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ITQED W VIS++FE+KGLVRQQLDSFDEF+QNTMQE+VDE+AD+ +    QH  G +SD
Sbjct: 11   ITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHT-GHESD 69

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH- 141
                 Y+I FGQIYLS+P +TE+DG    +FP+ ARLRNLTYSAPLY+++ KRV+  GH 
Sbjct: 70   MTRR-YEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMKKRVLI-GHS 127

Query: 142  -----------DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
                       D E     +D TKV+IGKVPIMLRS++C L    ++DL +L ECPYD G
Sbjct: 128  DPNGGQGDILWDAEHEESPEDTTKVWIGKVPIMLRSTFCILRGLQDQDLYDLNECPYDSG 187

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYFIINGSEKVLIAQE+M+TNHVYVF K QP+   ++AE+RS  E   +  S   V+M  
Sbjct: 188  GYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFH 247

Query: 251  RTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRP 310
            R   +  S G  ++AT+PYI+ +IPI +VFRALG ++D+DILEHICYD QD QM+E+L+P
Sbjct: 248  RNQER--SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKP 305

Query: 311  SLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAY 370
             +++ FVIQ+++VALD+IG RG T G++R++RI+YA+EILQKEMLPHV   +  E+KKAY
Sbjct: 306  CIDDGFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAY 365

Query: 371  YFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 430
            +FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV
Sbjct: 366  FFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCV 425

Query: 431  DNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLR 489
            +  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLR
Sbjct: 426  ETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLR 485

Query: 490  RLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE 549
            R N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++E
Sbjct: 486  RCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIE 545

Query: 550  FLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVV 609
            FLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VV
Sbjct: 546  FLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVV 604

Query: 610  RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKG 666
            RDIR +ELR+YTD GR  RPLFIVE Q+L ++K+ I  L Q    +DG    W  LV  G
Sbjct: 605  RDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLNQGYRDDDGEEYKWEHLVKSG 664

Query: 667  FIEYIDTEEEETTMISMTINDLVQARL-------HPEEAYAD------------TYTHCE 707
             IE +D EEEET MISMT  DL  +RL       H  +   D            T+THCE
Sbjct: 665  IIELLDAEEEETVMISMTPEDLENSRLQSAGIDPHTNDGDYDPAARLKAGNNSHTWTHCE 724

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKP
Sbjct: 725  IHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKP 784

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D 
Sbjct: 785  LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 844

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 886
            EKK G    E+F +P R NT+ M+HG+YDKL+DDGL  PGT VSGED+IIGKT PI  D 
Sbjct: 845  EKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVSGEDIIIGKTAPIPPDS 904

Query: 887  EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
            E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FVK+RVRS RIPQIGDKF+S
Sbjct: 905  EELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFAS 964

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EGI PDI++NPHAIPSRMTIG L+EC++ KVA  +G EG
Sbjct: 965  RHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEG 1024

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDK
Sbjct: 1025 DATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDK 1084

Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHV 1125
            IHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLKERLF+ SDAYR+HV
Sbjct: 1085 IHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAGFLKERLFEASDAYRLHV 1144

Query: 1126 CEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            C+ CGL AIANLKK SFECR CKNKT   Q++IPYA KLLFQEL +M IA R+ T
Sbjct: 1145 CDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQELQSMNIAARLYT 1199


>gi|195446199|ref|XP_002070673.1| GK12191 [Drosophila willistoni]
 gi|194166758|gb|EDW81659.1| GK12191 [Drosophila willistoni]
          Length = 1176

 Score = 1607 bits (4161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 777/1168 (66%), Positives = 924/1168 (79%), Gaps = 22/1168 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE++ E+QH  G+  
Sbjct: 21   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE-- 78

Query: 82   DFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
               ET   + + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK    K
Sbjct: 79   --VETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---TK 133

Query: 140  GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
              +G +  ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSE
Sbjct: 134  NVEGLDPVETQH-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSE 192

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGG 257
            KVLIAQEKM+TN VYVF  +   KYA+  E+RS  E  +RP ST++V M++R S   K  
Sbjct: 193  KVLIAQEKMATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKS 251

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV
Sbjct: 252  AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 311

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            +Q Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++H
Sbjct: 312  VQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVH 371

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD N
Sbjct: 372  RLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFN 431

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L+ AIK   IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIG
Sbjct: 432  LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIG 491

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  
Sbjct: 492  RDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 551

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLK 615
            EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +
Sbjct: 552  ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDR 611

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            E+RIYTD GR  RPL IVE   LL+KK  +  L++R+   +  W  LVA G +EYIDT E
Sbjct: 612  EIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLE 670

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EET MI+M+  DL Q +   + AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 671  EETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 727

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY
Sbjct: 728  SAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCY 787

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            +GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E+F +P R    GMR+  Y
Sbjct: 788  TGYNQEDSVILNASAVERGFFRSVFYRSYKDAENKRVGDQEENFEKPHRGTCQGMRNAHY 847

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
            DKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+ +RD S  LR+SETG+VD
Sbjct: 848  DKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVD 907

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+ PDI
Sbjct: 908  QVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDI 967

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGF 1032
            I+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATPF D V V  IS  L + GY +RG 
Sbjct: 968  IINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGN 1027

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 1028 EVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 1087

Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152
            FGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  CGLIAIANL+ N+FEC+GCKNKT 
Sbjct: 1088 FGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQ 1147

Query: 1153 IVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|194900689|ref|XP_001979888.1| GG16840 [Drosophila erecta]
 gi|190651591|gb|EDV48846.1| GG16840 [Drosophila erecta]
          Length = 1176

 Score = 1607 bits (4160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 776/1169 (66%), Positives = 925/1169 (79%), Gaps = 22/1169 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE++ E+QH  G+  
Sbjct: 21   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE-- 78

Query: 82   DFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
               ET   + + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK    K
Sbjct: 79   --VETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---TK 133

Query: 140  GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
              +G +  ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSE
Sbjct: 134  NVEGLDPVETQH-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSE 192

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGG 257
            KVLIAQEKM+TN VYVF  +   KYA+  E+RS  E  +RP ST++V M++R S   K  
Sbjct: 193  KVLIAQEKMATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKS 251

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV
Sbjct: 252  AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 311

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            +Q Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++H
Sbjct: 312  VQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVH 371

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD N
Sbjct: 372  RLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFN 431

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L+ AIK   IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIG
Sbjct: 432  LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIG 491

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  
Sbjct: 492  RDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 551

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLK 615
            EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +
Sbjct: 552  ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDR 611

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            E+RIYTD GR  RPL IVE   LL+KK  +  L++R+   +  W  LVA G +EYIDT E
Sbjct: 612  EIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLE 670

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EET MI+M+  DL Q +   + AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 671  EETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 727

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY
Sbjct: 728  SAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCY 787

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            +GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E+F +P+R    GMR+  Y
Sbjct: 788  TGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPNRGTCQGMRNAHY 847

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
            DKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+++RD S  LR+SETG+VD
Sbjct: 848  DKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVD 907

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDM +T EG+ PDI
Sbjct: 908  QVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDI 967

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGF 1032
            I+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATPF D V V  IS  L + GY +RG 
Sbjct: 968  IINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGN 1027

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 1028 EVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 1087

Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152
            FGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  CGLIAIANL+ N+FEC+GCKNKT 
Sbjct: 1088 FGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQ 1147

Query: 1153 IVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            I QV +PYA KLLFQELM+M IAPR++  
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNIAPRLMVN 1176


>gi|195109863|ref|XP_001999501.1| GI23040 [Drosophila mojavensis]
 gi|193916095|gb|EDW14962.1| GI23040 [Drosophila mojavensis]
          Length = 1176

 Score = 1607 bits (4160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 777/1168 (66%), Positives = 924/1168 (79%), Gaps = 22/1168 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE++ E+QH  G+  
Sbjct: 21   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE-- 78

Query: 82   DFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
               ET   + + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK    K
Sbjct: 79   --VETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---TK 133

Query: 140  GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
              +G +  ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSE
Sbjct: 134  NVEGMDPVETQH-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSE 192

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGG 257
            KVLIAQEKM+TN VYVF  +   KYA+  E+RS  E  +RP ST++V M++R S   K  
Sbjct: 193  KVLIAQEKMATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKS 251

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV
Sbjct: 252  AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 311

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            +Q Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++H
Sbjct: 312  VQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVH 371

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD N
Sbjct: 372  RLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFN 431

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L+ AIK   IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIG
Sbjct: 432  LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIG 491

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  
Sbjct: 492  RDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 551

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLK 615
            EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +
Sbjct: 552  ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDR 611

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            E+RIYTD GR  RPL IVE   LL+KK  +  L++R+   +  W  LVA G +EYIDT E
Sbjct: 612  EIRIYTDAGRICRPLLIVENGTLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLE 670

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EET MI+M+  DL Q +   + AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 671  EETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 727

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY
Sbjct: 728  SAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCY 787

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            +GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E+F +P R    GMR+  Y
Sbjct: 788  TGYNQEDSVILNASAVERGFFRSVFYRSYKDAENKRVGDQEENFEKPHRGTCQGMRNAHY 847

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
            DKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+ +RD S  LR+SETG+VD
Sbjct: 848  DKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVD 907

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+ PDI
Sbjct: 908  QVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDI 967

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGF 1032
            I+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATPF D V V  IS  L + GY +RG 
Sbjct: 968  IINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGN 1027

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 1028 EVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 1087

Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152
            FGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  CGLIAIANL+ N+FEC+GCKNKT 
Sbjct: 1088 FGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQ 1147

Query: 1153 IVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|395334467|gb|EJF66843.1| DNA-dependent RNA polymerase II second largest subunit [Dichomitus
            squalens LYAD-421 SS1]
          Length = 1222

 Score = 1607 bits (4160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 771/1199 (64%), Positives = 946/1199 (78%), Gaps = 38/1199 (3%)

Query: 15   EEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 74
            E EDE EEITQED W VI+++F++KGLVRQQLDSFDEF+QNTMQE+VDE++D+ +    Q
Sbjct: 21   EVEDEYEEITQEDCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQ 80

Query: 75   HNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 134
            H  G   D     Y+I FGQIYLS+P +TE+DG    +FP+ ARLRNLTYSAPLY+++ K
Sbjct: 81   HT-GHDGDVTRR-YEIKFGQIYLSRPTVTEADGAVVPVFPQEARLRNLTYSAPLYIEMKK 138

Query: 135  RVIKKGHD----GEEVTETQ------DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 184
            R++    D    G+ V E Q      D  KV+IGKVPIMLRS+YC L++  +K+L +L E
Sbjct: 139  RILIGREDQEGSGDMVWEVQRDDDPEDTRKVWIGKVPIMLRSTYCILHELGDKELFDLNE 198

Query: 185  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTM 244
            CPYD GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+  +++AE+RS  E   +  S  
Sbjct: 199  CPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQF 258

Query: 245  FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM 304
             V++  R+  +  S G  ++AT+PYI+ +IPI +VFRALG ++D+DILEHICYD QD QM
Sbjct: 259  QVKLYHRSQER--SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDNQM 316

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P ++E FVIQ++++ALDYIG RG T G+ R++R++YA+EILQKEMLPHV   +  
Sbjct: 317  LEMLKPCIDEGFVIQDREIALDYIGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGS 376

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  
Sbjct: 377  ESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYR 436

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  K+ N+  A+K  TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR TYAS
Sbjct: 437  YLQKCVETHKEFNISLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYAS 496

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 497  TLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTL 556

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + P++EFLEEWG E+ EE + A  P  TK+FVNG W+G+HRDP  LV TLR+LRR+ D+N
Sbjct: 557  SAPVIEFLEEWGLESLEENAHASTP-CTKVFVNGVWMGVHRDPVKLVSTLRKLRRKDDIN 615

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL-QQRESPE-DGGWHD 661
             EV VVRDIR +ELR+YTD GR  RPLFIVE Q+LLI+K+ I +L + ++ P  +  W  
Sbjct: 616  CEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLIQKKHIESLVRAKDDPTFNYNWDS 675

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEE-----------AYADTY 703
            L+  G IE +D EEEET MI MT  DL  +RL       H +E             A T+
Sbjct: 676  LLKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADEEEDPSARLKAPTSAHTW 735

Query: 704  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN+  RMDT+A +LYY
Sbjct: 736  THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYY 795

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RS
Sbjct: 796  PQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRS 855

Query: 824  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 883
            Y D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI
Sbjct: 856  YMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPI 915

Query: 884  SQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 941
              D E  GQ +R +T+RD S  L+ +E G+VDQVL+TTNA+G +FVK+RVRS RIPQIGD
Sbjct: 916  PPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGD 975

Query: 942  KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1001
            KF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ K+A  +
Sbjct: 976  KFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLI 1035

Query: 1002 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 1061
            G EGDATPFTD+TV+++S+ L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHM
Sbjct: 1036 GNEGDATPFTDLTVESVSQYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHM 1095

Query: 1062 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 1121
            VDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLKERLF+ SDAY
Sbjct: 1096 VDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERLFEASDAY 1155

Query: 1122 RVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            R+HVC+ CGL AIANLKK +FECR CKNKT   Q++IPYA KLLFQEL +M IA R+ T
Sbjct: 1156 RLHVCDICGLTAIANLKKQTFECRACKNKTACSQIYIPYAAKLLFQELQSMNIAARLYT 1214


>gi|195392246|ref|XP_002054770.1| RNA polymerase II 140kD subunit [Drosophila virilis]
 gi|194152856|gb|EDW68290.1| RNA polymerase II 140kD subunit [Drosophila virilis]
          Length = 1176

 Score = 1606 bits (4159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 777/1168 (66%), Positives = 924/1168 (79%), Gaps = 22/1168 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE++ E+QH  G+  
Sbjct: 21   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE-- 78

Query: 82   DFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
               ET   + + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK    K
Sbjct: 79   --VETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---TK 133

Query: 140  GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
              +G +  ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSE
Sbjct: 134  NVEGMDPVETQH-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSE 192

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGG 257
            KVLIAQEKM+TN VYVF  +   KYA+  E+RS  E  +RP ST++V M++R S   K  
Sbjct: 193  KVLIAQEKMATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKS 251

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV
Sbjct: 252  AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 311

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            +Q Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++H
Sbjct: 312  VQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVH 371

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD N
Sbjct: 372  RLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFN 431

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L+ AIK   IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIG
Sbjct: 432  LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIG 491

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  
Sbjct: 492  RDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 551

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLK 615
            EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +
Sbjct: 552  ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDR 611

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            E+RIYTD GR  RPL IVE   LL+KK  +  L++R+   +  W  LVA G +EYIDT E
Sbjct: 612  EIRIYTDAGRICRPLLIVENGTLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLE 670

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EET MI+M+  DL Q +   + AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 671  EETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 727

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY
Sbjct: 728  SAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCY 787

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            +GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E+F +P R    GMR+  Y
Sbjct: 788  TGYNQEDSVILNASAVERGFFRSVFYRSYKDAENKRVGDQEENFEKPHRGTCQGMRNAHY 847

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
            DKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+ +RD S  LR+SETG+VD
Sbjct: 848  DKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVD 907

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EG+ PDI
Sbjct: 908  QVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDI 967

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGF 1032
            I+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATPF D V V  IS  L + GY +RG 
Sbjct: 968  IINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGN 1027

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 1028 EVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 1087

Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152
            FGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  CGLIAIANL+ N+FEC+GCKNKT 
Sbjct: 1088 FGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQ 1147

Query: 1153 IVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|409083783|gb|EKM84140.1| hypothetical protein AGABI1DRAFT_117576 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1220

 Score = 1606 bits (4158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 777/1213 (64%), Positives = 945/1213 (77%), Gaps = 40/1213 (3%)

Query: 3    EDDYDYEE-QHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            ++ Y+YE+  +  E+ED  EEITQED W VIS++FE+KGLVRQQLDSFDEF+QNTMQE+V
Sbjct: 5    QETYEYEDPNYGVEDEDSYEEITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELV 64

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            DE++D+ +    QH  G ++D     Y+I FGQIYLS+P +TE+DG    +FP+ ARLRN
Sbjct: 65   DENSDLILDQADQHT-GHETDMTRR-YEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRN 122

Query: 122  LTYSAPLYVDVTKRVIKKGHD----GEEVTETQ------DFTKVFIGKVPIMLRSSYCTL 171
            LTYSAPLY+++ KRV+    D    GE   E +      D TKV+IGKVPIMLRS++C L
Sbjct: 123  LTYSAPLYIEMRKRVLVGREDPDTPGEIAWEAEKEDHPDDATKVWIGKVPIMLRSTFCIL 182

Query: 172  YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 231
                ++DL +L ECPYD GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+   ++AE+R
Sbjct: 183  RGLQDQDLYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIR 242

Query: 232  SMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 291
            S  E   +  S   V+M  R   +  S G  ++AT+PYI+ +IPI +VFR LG ++D+DI
Sbjct: 243  SAVEKGGKTISQFQVKMFHRNQER--SLGNVMKATIPYIKVDIPIWVVFRGLGVISDRDI 300

Query: 292  LEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQ 351
            LEHICYD QD QM+E+L+P +++ FVIQ+++VALD+IG RG T G++R++RI+YA+EILQ
Sbjct: 301  LEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQ 360

Query: 352  KEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 411
            KEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LF
Sbjct: 361  KEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLF 420

Query: 412  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 470
            RMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++A
Sbjct: 421  RMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKA 480

Query: 471  GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 530
            GVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVK
Sbjct: 481  GVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVK 540

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590
            NLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LV
Sbjct: 541  NLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTSP-CTKVFVNGVWMGVHRDPANLV 599

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
            KT+++LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIVE Q+LL+ KR I  L  
Sbjct: 600  KTIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNS 659

Query: 651  RESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEA--- 698
                E     W  L+  G IE +D EEEET MISMT  DL  +RL       H  +    
Sbjct: 660  GSDDEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGDFD 719

Query: 699  ---------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 749
                     +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAM KQAMGIY+TN
Sbjct: 720  PAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMAKQAMGIYLTN 779

Query: 750  YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 809
            +  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 780  FLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 839

Query: 810  SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 869
            SIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT 
Sbjct: 840  SIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTG 899

Query: 870  VSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 927
            V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FV
Sbjct: 900  VRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFV 959

Query: 928  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
            KVRVR+ RIPQIGDKF+SRHGQKGTVG+TY QEDMP+T EGI PD+I+NPHAIPSRMTIG
Sbjct: 960  KVRVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIG 1019

Query: 988  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1047
             L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A 
Sbjct: 1020 HLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQ 1079

Query: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 1107
            I+LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG +
Sbjct: 1080 IYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIA 1139

Query: 1108 HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1167
             FLKERLF+ SDAYR+HVC+ CGL AIANLKK +FECR CKNKT   Q++IPYA KLLFQ
Sbjct: 1140 GFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRSCKNKTACSQIYIPYAAKLLFQ 1199

Query: 1168 ELMAMAIAPRMLT 1180
            EL +M IA R+ T
Sbjct: 1200 ELQSMNIAARLYT 1212


>gi|195501705|ref|XP_002097907.1| GE24221 [Drosophila yakuba]
 gi|194184008|gb|EDW97619.1| GE24221 [Drosophila yakuba]
          Length = 1176

 Score = 1605 bits (4157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 776/1168 (66%), Positives = 924/1168 (79%), Gaps = 22/1168 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE++ E+QH  G+  
Sbjct: 21   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE-- 78

Query: 82   DFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
               ET   + + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK    K
Sbjct: 79   --VETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---TK 133

Query: 140  GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
              +G +  ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSE
Sbjct: 134  NVEGLDPVETQH-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSE 192

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGG 257
            KVLIAQEKM+TN VYVF  +   KYA+  E+RS  E  +RP ST++V M++R S   K  
Sbjct: 193  KVLIAQEKMATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKS 251

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV
Sbjct: 252  AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 311

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            +Q Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++H
Sbjct: 312  VQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVH 371

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD N
Sbjct: 372  RLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFN 431

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L+ AIK   IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIG
Sbjct: 432  LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIG 491

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  
Sbjct: 492  RDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 551

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLK 615
            EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +
Sbjct: 552  ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDR 611

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            E+RIYTD GR  RPL IVE   LL+KK  +  L++R+   +  W  LVA G +EYIDT E
Sbjct: 612  EIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLE 670

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EET MI+M+  DL Q +   + AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 671  EETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 727

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY
Sbjct: 728  SAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCY 787

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            +GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E+F +P R    GMR+  Y
Sbjct: 788  TGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHY 847

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
            DKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+++RD S  LR+SETG+VD
Sbjct: 848  DKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVD 907

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDM +T EG+ PDI
Sbjct: 908  QVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDI 967

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGF 1032
            I+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATPF D V V  IS  L + GY +RG 
Sbjct: 968  IINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGN 1027

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 1028 EVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 1087

Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152
            FGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  CGLIAIANL+ N+FEC+GCKNKT 
Sbjct: 1088 FGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQ 1147

Query: 1153 IVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|17136444|ref|NP_476706.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
 gi|195329082|ref|XP_002031240.1| GM24152 [Drosophila sechellia]
 gi|12644108|sp|P08266.2|RPB2_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 140 kDa
            polypeptide
 gi|7299847|gb|AAF55024.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
 gi|27819971|gb|AAO25022.1| LD22387p [Drosophila melanogaster]
 gi|194120183|gb|EDW42226.1| GM24152 [Drosophila sechellia]
          Length = 1176

 Score = 1605 bits (4156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 776/1168 (66%), Positives = 924/1168 (79%), Gaps = 22/1168 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE++ E+QH  G+  
Sbjct: 21   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE-- 78

Query: 82   DFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
               ET   + + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK    K
Sbjct: 79   --VETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---TK 133

Query: 140  GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
              +G +  ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSE
Sbjct: 134  NVEGLDPVETQH-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSE 192

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGG 257
            KVLIAQEKM+TN VYVF  +   KYA+  E+RS  E  +RP ST++V M++R S   K  
Sbjct: 193  KVLIAQEKMATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKS 251

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV
Sbjct: 252  AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 311

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            +Q Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++H
Sbjct: 312  VQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVH 371

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD N
Sbjct: 372  RLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFN 431

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L+ AIK   IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIG
Sbjct: 432  LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIG 491

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  
Sbjct: 492  RDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 551

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLK 615
            EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +
Sbjct: 552  ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDR 611

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            E+RIYTD GR  RPL IVE   LL+KK  +  L++R+   +  W  LVA G +EYIDT E
Sbjct: 612  EIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLE 670

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EET MI+M+  DL Q +   + AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 671  EETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 727

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY
Sbjct: 728  SAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCY 787

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            +GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E+F +P R    GMR+  Y
Sbjct: 788  TGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHY 847

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
            DKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+++RD S  LR+SETG+VD
Sbjct: 848  DKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVD 907

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDM +T EG+ PDI
Sbjct: 908  QVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDI 967

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGF 1032
            I+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATPF D V V  IS  L + GY +RG 
Sbjct: 968  IINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGN 1027

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 1028 EVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 1087

Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152
            FGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  CGLIAIANL+ N+FEC+GCKNKT 
Sbjct: 1088 FGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQ 1147

Query: 1153 IVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|195570991|ref|XP_002103487.1| GD18948 [Drosophila simulans]
 gi|194199414|gb|EDX12990.1| GD18948 [Drosophila simulans]
          Length = 1176

 Score = 1603 bits (4151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 775/1168 (66%), Positives = 923/1168 (79%), Gaps = 22/1168 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE++ E+QH  G+  
Sbjct: 21   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE-- 78

Query: 82   DFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
               ET   + + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK    K
Sbjct: 79   --VETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---TK 133

Query: 140  GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
              +G +  ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSE
Sbjct: 134  NVEGLDPVETQH-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSE 192

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGG 257
            KVLIAQEKM+TN VYVF  +   KYA+  E+RS  E  +RP ST++V M++R S   K  
Sbjct: 193  KVLIAQEKMATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKS 251

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV
Sbjct: 252  AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 311

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            +Q Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++H
Sbjct: 312  VQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVH 371

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD N
Sbjct: 372  RLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFN 431

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L+ AIK   IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIG
Sbjct: 432  LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIG 491

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  
Sbjct: 492  RDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 551

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLK 615
            EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +
Sbjct: 552  ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDR 611

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            E+RIYTD GR  RPL IVE   LL+KK  +  L++R+   +  W  LVA G +EYIDT E
Sbjct: 612  EIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLE 670

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EET MI+M+  DL Q +   + AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 671  EETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 727

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY
Sbjct: 728  SAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCY 787

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            +GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E+F +P R    GMR+  Y
Sbjct: 788  TGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHY 847

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
            DKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+++RD S  LR+SETG+VD
Sbjct: 848  DKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVD 907

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDM +T EG+ PDI
Sbjct: 908  QVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDI 967

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGF 1032
            I+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATPF D V V  IS  L + GY +RG 
Sbjct: 968  IINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGN 1027

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 1028 EVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 1087

Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152
            FGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  CGLIAIANL+ N+FEC+ CKNKT 
Sbjct: 1088 FGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKSCKNKTQ 1147

Query: 1153 IVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNIAPRLMV 1175


>gi|324120668|dbj|BAJ78725.1| RNA polymerase II second largest subunit [Stichotrema asahinai]
          Length = 1173

 Score = 1603 bits (4150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 772/1165 (66%), Positives = 923/1165 (79%), Gaps = 22/1165 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDS+DEFIQ ++Q +V++S  IEI  E+QH  G+  
Sbjct: 21   EVWQEACWIVINAYFDEKGLVRQQLDSYDEFIQMSVQRVVEDSPVIEIVAEAQHLAGEIE 80

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            +     Y + F QIYLSKP   E DG  + L P  ARLRNLTYSAPLYVD++K +I+ G 
Sbjct: 81   NPPR--YLLKFEQIYLSKPTHWEKDGAPSPLVPNEARLRNLTYSAPLYVDISKTIIRDGE 138

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            D       +  TK FIGK+PIMLRS+YC L   +++DLTEL ECP+D G YFIINGSEKV
Sbjct: 139  D----PIYKPHTKTFIGKIPIMLRSTYCLLNGMTDRDLTELNECPFDPGAYFIINGSEKV 194

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKG--GSS 259
            LIAQEKM+TN VYVF  +   K+AY  E+RS  E  +RP ST++V ML+R    G   S 
Sbjct: 195  LIAQEKMATNTVYVFAMKD-GKFAYKTEIRSCLEHSSRPTSTLWVNMLARGGQVGKRNSV 253

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A LPYI+ EIPI++VFRALGFVAD+DILEHI YDF+D +MME+++PSL+EAFVIQ
Sbjct: 254  GQRIIAILPYIKQEIPIMVVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 313

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q +AL++IG RGA  GVT++KRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 314  EQNIALNFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 373

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDL GPLL  LFR +F+ L ++VR Y QK VD GKD N++
Sbjct: 374  LLAALGRRELDDRDHYGNKRLDLGGPLLSFLFRGMFKNLIKEVRLYAQKFVDRGKDFNIE 433

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             A+K + I+ GL+YSLATGNW  Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 434  LAVKTRIISDGLRYSLATGNWADQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 493

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 494  GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 553

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  +TKIFVNGCWVGIHRDPE+L+ TLR+LRR++D + +EV +VRDIR +E+
Sbjct: 554  LEEIAPSSIADSTKIFVNGCWVGIHRDPELLMSTLRKLRRQMDIIVSEVSMVRDIRDREI 613

Query: 618  RIYTDYGRCSRPLFIVEKQ-RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEE 676
            RIYTD GR  RPL IV+ + RLL+KK+DI  L+ R    D GW  LV+ G +EYIDT EE
Sbjct: 614  RIYTDAGRICRPLLIVDSEGRLLMKKKDIDLLKDR----DYGWQSLVSSGVVEYIDTLEE 669

Query: 677  ETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
            ET MI+MT NDL Q R   ++ Y   +THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQS
Sbjct: 670  ETIMIAMTPNDLRQNR---DDTYCANFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 726

Query: 737  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
            AMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+
Sbjct: 727  AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYT 786

Query: 797  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 856
            GYNQEDS+I+N S+++RGFFRS+F+RSYRD E +      E F +P+R    GMRH  YD
Sbjct: 787  GYNQEDSIIINASAVERGFFRSVFYRSYRDAEVRRLGDQDEQFEKPNRLTCQGMRHAIYD 846

Query: 857  KLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQ 914
            KLD+DG+  PG RVSG+DV+IGKT  +  ++DE +    +YT+RD S  LR SETG+VDQ
Sbjct: 847  KLDEDGIIAPGVRVSGDDVVIGKTITLMENEDELESVTKKYTKRDASTFLRRSETGVVDQ 906

Query: 915  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 974
            V+LT NA+G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII
Sbjct: 907  VMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTSEGITPDII 966

Query: 975  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFE 1033
            +NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L + GY +RG E
Sbjct: 967  INPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISHLLQEYGYNLRGNE 1026

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
             MYNG+TGR++ A IF+GPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRF
Sbjct: 1027 IMYNGYTGRKINAQIFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPLEGRARDGGLRF 1086

Query: 1094 GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDI 1153
            GEMERDC I+HGA+ FL+ERLF  SD YR+HVC  CGLI IANL+ N+FEC+ CKNKT I
Sbjct: 1087 GEMERDCQISHGAAQFLRERLFTVSDPYRIHVCNLCGLIVIANLRNNTFECKSCKNKTQI 1146

Query: 1154 VQVHIPYACKLLFQELMAMAIAPRM 1178
             QVH+PYA KLL QELMAM I+PR+
Sbjct: 1147 SQVHLPYASKLLMQELMAMLISPRI 1171


>gi|195064711|ref|XP_001996619.1| GH19704 [Drosophila grimshawi]
 gi|193892751|gb|EDV91617.1| GH19704 [Drosophila grimshawi]
          Length = 1175

 Score = 1602 bits (4149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 776/1168 (66%), Positives = 923/1168 (79%), Gaps = 22/1168 (1%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S  IE++ E+QH  G+  
Sbjct: 20   ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE-- 77

Query: 82   DFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
               ET   + + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK    K
Sbjct: 78   --VETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---TK 132

Query: 140  GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
              +G +  ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSE
Sbjct: 133  NVEGLDPVETQH-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSE 191

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGG 257
            KVLIAQEKM+TN VYVF  +   KYA+  E+RS  E  +RP ST++V M++R S   K  
Sbjct: 192  KVLIAQEKMATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKS 250

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV
Sbjct: 251  AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 310

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            +Q Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++H
Sbjct: 311  VQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVH 370

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL +LGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++VR Y QK +D GKD N
Sbjct: 371  RLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFN 430

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L+ AIK   IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIG
Sbjct: 431  LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIG 490

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  
Sbjct: 491  RDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 550

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLK 615
            EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +
Sbjct: 551  ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDR 610

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            E+RIYTD GR  RPL IVE   LL+KK  +  L++R+   +  W  LVA G +EYIDT E
Sbjct: 611  EIRIYTDAGRICRPLLIVENGTLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLE 669

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EET MI+M+  DL Q +   + AY  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 670  EETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 726

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY
Sbjct: 727  SAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCY 786

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            +GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E+F +P R    GMR+  Y
Sbjct: 787  TGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHY 846

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
            DKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+ +RD S  LR+SETG+VD
Sbjct: 847  DKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVD 906

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDM +T EG+ PDI
Sbjct: 907  QVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDI 966

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGF 1032
            I+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATPF D V V  IS  L + GY +RG 
Sbjct: 967  IINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGN 1026

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 1027 EVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 1086

Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152
            FGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C  CGLIAIANL+ N+FEC+GCKNKT 
Sbjct: 1087 FGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQ 1146

Query: 1153 IVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1147 ISQVRLPYAAKLLFQELMSMNIAPRLMV 1174


>gi|452820468|gb|EME27510.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
          Length = 1184

 Score = 1601 bits (4146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 771/1198 (64%), Positives = 931/1198 (77%), Gaps = 48/1198 (4%)

Query: 19   EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78
            ++EEITQEDAW VIS+YFEEKGLVRQQLDSFDEF+ NTMQEIVD   D+ +  E Q+ PG
Sbjct: 2    DDEEITQEDAWTVISSYFEEKGLVRQQLDSFDEFVTNTMQEIVDSQPDLVLTAEPQYLPG 61

Query: 79   QQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
            Q+S+  +  Y +SFGQ+ LSKP  TE  GET  L+P  ARLRNLTYS+ LY DVT   + 
Sbjct: 62   QRSEDLDKRYVVSFGQLSLSKPTFTEDTGETRPLYPNQARLRNLTYSSALYCDVTVTEVN 121

Query: 139  KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
                G+E T      +VF+G++PIML+S +C LY     DL ELGECPYDQGGYF+INGS
Sbjct: 122  L-ESGKEETSQHPPIRVFLGRIPIMLKSQFCHLYNLEPWDLAELGECPYDQGGYFVINGS 180

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKV+IAQE+M++NHV+VFK+ QP+KY+YVAE RS  +S NRPPS + V++L R  AKG  
Sbjct: 181  EKVIIAQERMTSNHVFVFKRSQPSKYSYVAECRSAPDSGNRPPSLLQVKLL-RGGAKG-I 238

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
            SGQYIR ++PYI+ +IP+IIVFRALGF  D++I+ HICY+FQD ++M  L PS+EEA VI
Sbjct: 239  SGQYIRVSMPYIKQDIPVIIVFRALGFENDREIMSHICYNFQDEELMTFLMPSIEEAAVI 298

Query: 319  QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            Q+  VALDYIGKRG T+ VT+DKRI+YA+E+LQKE LPH+G G+ CE KK Y+ GY+I+R
Sbjct: 299  QDHLVALDYIGKRGNTIAVTKDKRIQYAREVLQKEFLPHIGIGEGCELKKGYFLGYVINR 358

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LL  ALGRR  DDRDHYGNKRLDLAGPLLG +FR   R++ ++ R+ +Q+ +D GK +NL
Sbjct: 359  LLSTALGRREVDDRDHYGNKRLDLAGPLLGEMFRHHLRRVLKETRSILQRNLDTGKGLNL 418

Query: 439  QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
            Q A+K++TIT+GLK +LATGNW +      R GVSQVLNRLTYASTLSHLRRLNSPIGRE
Sbjct: 419  QGAVKSRTITNGLKNALATGNWIRG-----RTGVSQVLNRLTYASTLSHLRRLNSPIGRE 473

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEGQACGL KNLALM YI+VG+ + P++EFLEEW  EN
Sbjct: 474  GKLAKPRQLHNTHWGMICPAETPEGQACGLTKNLALMAYISVGTPSAPVIEFLEEWSMEN 533

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELR 618
              EISP+V+P ATK+FVNG WVGIHR+PE LV+TL+ LRR+  +  EV +V D + KELR
Sbjct: 534  LLEISPSVVPLATKVFVNGAWVGIHREPEDLVRTLKELRRQGTIKEEVSIVMDHQFKELR 593

Query: 619  IYTDYGRCSRPLFIVEK----------------------QRLLIKKRDIIALQQRESPED 656
            IYTD GR  RPLFIV                        Q L IKK  I  L+ R   + 
Sbjct: 594  IYTDPGRVCRPLFIVNPPPPPISFEDANEDTNVFGQRPPQTLAIKKSHIDMLK-RTDGDR 652

Query: 657  GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
              +  LV  G IEY+D  EEETTMI+M I DL+      E      YTHCEIHPS+ILGV
Sbjct: 653  CSFSFLVENGLIEYVDVNEEETTMIAMNIKDLI------ETDSEVVYTHCEIHPSMILGV 706

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            C SIIPFPDHNQSPRNTYQ+AMGKQAMGIY TNYQ RMDT+A+VLYYPQKPLVTTRAMEH
Sbjct: 707  CGSIIPFPDHNQSPRNTYQAAMGKQAMGIYATNYQLRMDTMAHVLYYPQKPLVTTRAMEH 766

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR LPAGINAIVAIACYSG+NQEDSVI++QS++DRG FRSLFFR++RDEE++     +
Sbjct: 767  LQFRSLPAGINAIVAIACYSGFNQEDSVILSQSAVDRGLFRSLFFRTFRDEERRRLGGAQ 826

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRY- 895
            E F  P+    +G + G+YDKL++DGL   GTRVSG+D+++GKT P+ +  A G+     
Sbjct: 827  ETFEVPNPKECIGTKRGAYDKLEEDGLVAEGTRVSGDDILVGKTCPLGRMAANGEEDETW 886

Query: 896  ----------TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
                      T++D S S+R +ETG+VD+V+L  N  G RFVKVR+RSVR+PQ+GDKFSS
Sbjct: 887  KAYSQTLGGKTKKDASTSMRSTETGVVDKVMLAANEAGARFVKVRIRSVRVPQVGDKFSS 946

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGTVG+TY QED+P+ V+GI PDII+NPHAIPSRMTIGQLIEC+ GKV+A  G+EG
Sbjct: 947  RHGQKGTVGITYGQEDLPFNVDGIVPDIIINPHAIPSRMTIGQLIECLQGKVSAIAGREG 1006

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFT VTVD IS+ L   GYQ RG+E MYNG TGR L A IF+GPTYYQRLKHMVDDK
Sbjct: 1007 DATPFTWVTVDEISQQLKTLGYQSRGWELMYNGFTGRPLEAHIFIGPTYYQRLKHMVDDK 1066

Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHV 1125
            IHSR RGPVQILTRQP EGR+R+GGLRFGEMERDCMI+HGA+ FLKERL D+SDAYR+HV
Sbjct: 1067 IHSRARGPVQILTRQPVEGRAREGGLRFGEMERDCMISHGAAFFLKERLMDESDAYRIHV 1126

Query: 1126 CEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKED 1183
            C  CGLIAIA+LK+N+FECR C+NKT+I QV IPYACKLLFQELMAM IAPR++T ++
Sbjct: 1127 CNLCGLIAIADLKRNTFECRSCRNKTEISQVFIPYACKLLFQELMAMGIAPRIVTADE 1184


>gi|392597726|gb|EIW87048.1| DNA-dependent RNA polymerase II second largest subunit [Coniophora
            puteana RWD-64-598 SS2]
          Length = 1228

 Score = 1601 bits (4145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 769/1195 (64%), Positives = 943/1195 (78%), Gaps = 42/1195 (3%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ITQED W VIS++F++KGLVRQQLDSFDEF+QNTMQE+VDE+AD+ +    QH  G ++D
Sbjct: 29   ITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHT-GHETD 87

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                 Y+I FGQIYLS+P +TE+DG    +FP+ ARLRNLTYSAPLY+D+ KRV+    D
Sbjct: 88   MTRR-YEIHFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIDMKKRVLTGRED 146

Query: 143  GE---EVT--------ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
             +   EVT        E Q+ TKV+IGKVPIMLRS++C L +  ++DL +L ECPYD GG
Sbjct: 147  PDMPGEVTWIPEDPDSENQEGTKVWIGKVPIMLRSTFCILRELQDQDLYDLNECPYDSGG 206

Query: 192  YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR 251
            YFIINGSEKVLIAQE+M+TNHVYVF K QP+  +++AE+RS  E   +  S   V+M  R
Sbjct: 207  YFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKMFHR 266

Query: 252  TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPS 311
            +  +  S G  ++AT+PYI+ +IPI +VFRALG ++D+DILEHICYD QD+QM+E+L+P 
Sbjct: 267  SQER--SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPC 324

Query: 312  LEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYY 371
            +++ FVIQ+++VALD+IG RG T G++R++RI+YA+EILQKEMLPHV   +  E+KKAY+
Sbjct: 325  IDDGFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYF 384

Query: 372  FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 431
            FGY+IHRLLL A+ RR  DDRDH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+
Sbjct: 385  FGYMIHRLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVE 444

Query: 432  NGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRR 490
              K+ N+  A+K +TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR
Sbjct: 445  THKEFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRR 504

Query: 491  LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 550
             N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EF
Sbjct: 505  CNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEF 564

Query: 551  LEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVR 610
            LEEWG E+ EE + +     TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVR
Sbjct: 565  LEEWGLESLEENAHSS-AACTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVR 623

Query: 611  DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKG 666
            DIR +ELR+YTD GR  RPLFIVE Q+LL++K+ I  L Q     +  E+  W  LV  G
Sbjct: 624  DIRERELRLYTDAGRVCRPLFIVEDQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQLVKGG 683

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHP--------EEAY-----------ADTYTHCE 707
             IE +D EEEET MI+MT  DL  +RL          +E Y           A T+THCE
Sbjct: 684  VIELLDAEEEETVMIAMTPEDLENSRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTHCE 743

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKP
Sbjct: 744  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKP 803

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D 
Sbjct: 804  LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 863

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 886
            EKK G    E+F +P R  T+ M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D 
Sbjct: 864  EKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDS 923

Query: 887  EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
            E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+S
Sbjct: 924  EELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFAS 983

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EG
Sbjct: 984  RHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEG 1043

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDK
Sbjct: 1044 DATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDK 1103

Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHV 1125
            IHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLKERLF+ SDAYR+HV
Sbjct: 1104 IHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERLFEASDAYRLHV 1163

Query: 1126 CEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            C+ CGL AIANLKK +FECR CKNKT   Q++IPYA KLLFQEL +M IA R+ T
Sbjct: 1164 CDICGLTAIANLKKQTFECRACKNKTACSQLYIPYAAKLLFQELQSMNIAARLYT 1218


>gi|403417741|emb|CCM04441.1| predicted protein [Fibroporia radiculosa]
          Length = 1226

 Score = 1601 bits (4145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 765/1201 (63%), Positives = 939/1201 (78%), Gaps = 40/1201 (3%)

Query: 15   EEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 74
            ++E+E E ITQED W VIS++FE+KGLVRQQLDSFDEF+QNTMQE+VDE+AD+ +    Q
Sbjct: 23   DDEEEYETITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQSDQ 82

Query: 75   HNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 134
            H  G   D     Y+I FGQIYLS+P +TE+DG  A +FP+ ARLRNLTYSAPLY+++ K
Sbjct: 83   HT-GHDGDVNRR-YEIKFGQIYLSRPTVTEADGSVAPVFPQEARLRNLTYSAPLYIEMKK 140

Query: 135  RVIKKGHDGEEVT-----------ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            RV+    D + +T             +D  KV+IGKVPIMLRSS+C L+   ++D+ +L 
Sbjct: 141  RVLVGREDPDSLTGDMTWEPEHEENPEDTRKVWIGKVPIMLRSSFCILHGLVDEDVYDLN 200

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP+D GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+  +++AE+RS  E   +  S 
Sbjct: 201  ECPFDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVERGGKTISQ 260

Query: 244  MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQ 303
              V++  R   +  S G  ++AT+PYIR +IPI +VFRALG ++D+DILEHICYD QD Q
Sbjct: 261  FQVKLFHRNQER--SLGNVMKATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDAQ 318

Query: 304  MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDF 363
            M+E+L+P +++ FVIQ+++VALD+IG RG T G+ R++R++YA+EILQKEMLPHV   + 
Sbjct: 319  MLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEG 378

Query: 364  CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 423
             E+KKAY+FGY+IHRLLL A+ RR  DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV 
Sbjct: 379  SESKKAYFFGYMIHRLLLAAMERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVY 438

Query: 424  AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYA 482
             Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR TYA
Sbjct: 439  RYLQKCVETHKEFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYA 498

Query: 483  STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 542
            STLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS
Sbjct: 499  STLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGS 558

Query: 543  AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV 602
             + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D+
Sbjct: 559  LSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDI 617

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ--RESPEDGGWH 660
            + EV VVRDIR +ELR+YTD GR  RPLFIVE Q+LL+ K+ I  L     +  E   W 
Sbjct: 618  SPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLTKKHIKYLNDGVDDQNEQYKWD 677

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE-------------------EAYAD 701
             L+  G IE +D EEEET MISM   DL  +RL                         A 
Sbjct: 678  QLIKGGVIELLDAEEEETVMISMNPEDLENSRLQSSGMDPHANDPDFDPAARLKPTITAH 737

Query: 702  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
            T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +L
Sbjct: 738  TWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANIL 797

Query: 762  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
            YYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++
Sbjct: 798  YYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYY 857

Query: 822  RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
            RSY D EKK G    E+F +P R NT+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT 
Sbjct: 858  RSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTA 917

Query: 882  PISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            PI  D E  GQ +R +TRRD S  L+ +E+G++DQVL+TTNA+G +FVK+RVRS RIPQI
Sbjct: 918  PIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQI 977

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKF+SRHGQKGT+G+TY QEDMP+T EGITPD+I+NPHAIPSRMTIG L+EC++ KVA 
Sbjct: 978  GDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVAT 1037

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
             +G EGDATPFTD+TV+++S+ L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLK
Sbjct: 1038 LIGNEGDATPFTDLTVESVSQFLRQKGYQSRGLEIMYHGHTGRKLQAQVYLGPTYYQRLK 1097

Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
            HMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLKERLF+ SD
Sbjct: 1098 HMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERLFEASD 1157

Query: 1120 AYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            AYR+HVC+ CGL AIANLKK +FECR CKNKT   Q++IPYA KLLFQEL +M IA R+ 
Sbjct: 1158 AYRLHVCDICGLTAIANLKKQTFECRSCKNKTACSQLYIPYAAKLLFQELQSMNIAARLY 1217

Query: 1180 T 1180
            T
Sbjct: 1218 T 1218


>gi|213408763|ref|XP_002175152.1| DNA-directed RNA polymerase II complex subunit Rpb2
            [Schizosaccharomyces japonicus yFS275]
 gi|212003199|gb|EEB08859.1| DNA-directed RNA polymerase II complex subunit Rpb2
            [Schizosaccharomyces japonicus yFS275]
          Length = 1210

 Score = 1599 bits (4140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 763/1209 (63%), Positives = 948/1209 (78%), Gaps = 47/1209 (3%)

Query: 15   EEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 74
            E+    E +TQED W VIS+YFEE  L RQQL SFDEF+QNTMQEIVD+ + + +   +Q
Sbjct: 4    EDYQYNETLTQEDCWTVISSYFEENSLARQQLSSFDEFVQNTMQEIVDDDSTLTLDQYAQ 63

Query: 75   HNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 134
            H  G Q D+    Y+I+FGQIYLS+P MTE+DG T T+FP+ ARLRNLTYS+PLYVD+ K
Sbjct: 64   HT-GAQGDYTRR-YEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRK 121

Query: 135  RVIKKGHD----GEEV--TETQD--FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            +V++        GEE+  TE +D   +KVFIGK+PIMLRS++C L   S+ +L +L ECP
Sbjct: 122  KVMRAQDSNVPIGEEIWLTEEEDDEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECP 181

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            YDQGGYFIINGSEKV+IAQE+ + N V VF+K  P+  AYVAE+RS  E  +R  S+M +
Sbjct: 182  YDQGGYFIINGSEKVIIAQERSAANIVQVFRKAAPSPIAYVAEIRSALERGSRLISSMQI 241

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            ++++R++    +SGQ I+ATLPYIR++IPI++VFRALG V D+DILEHICYD  D QM+E
Sbjct: 242  KLMARSTE---NSGQTIKATLPYIRSDIPIVVVFRALGVVPDRDILEHICYDPNDLQMLE 298

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +++P +EEAFVIQ++ VALDYIGKRG+T GVTR+KR++YA +ILQKEMLPH+ T +  ET
Sbjct: 299  MMKPCIEEAFVIQDKDVALDYIGKRGSTTGVTREKRLRYAHDILQKEMLPHITTLEGFET 358

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY++HR+LLCAL RR  DDRDH+G KRLDLAGPLL  LFRMLF+K+TRDV  Y+
Sbjct: 359  RKAFFLGYMVHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFKKMTRDVYKYM 418

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            QKCV+  ++ NL  A+K+ TIT+GL+YSLATGNWG Q      R GVSQVLNR T+ASTL
Sbjct: 419  QKCVETNREFNLTLAVKSNTITNGLRYSLATGNWGDQKRGLANRVGVSQVLNRYTFASTL 478

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM Y++VGS + 
Sbjct: 479  SHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSA 538

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PI+EFLEEWG E+ E+ +P+  P ATK+FVNG W+G+HRDP  L +TLR LRRR+D++ E
Sbjct: 539  PIIEFLEEWGMESLEDYNPSASPNATKVFVNGIWLGVHRDPVHLTETLRSLRRRLDISAE 598

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPED-- 656
            V +VRDIR KELR++TD GR  RPLFIV+       K  L I+K  I  L +     D  
Sbjct: 599  VSIVRDIREKELRLFTDAGRICRPLFIVDNDSNSDTKGELCIRKEHIQQLLEDRDRFDIN 658

Query: 657  ----GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----------VQARLHPEE---- 697
                 GW  L+A G IEY+D EEEET MI+M+ +DL           +Q  L P +    
Sbjct: 659  AEQRFGWSSLIASGLIEYLDAEEEETVMIAMSPDDLELSRQANAGYEMQEELDPAKRVKP 718

Query: 698  ---AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
                +   +THCEIHP++ILG+ ASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TNYQ RM
Sbjct: 719  APNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNYQVRM 778

Query: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
            DT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQSSIDRG
Sbjct: 779  DTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQSSIDRG 838

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
             FRS+F+R+Y D+EKK+G  V E+F RP RS T+ M+HG+YDKL+DDGL  PGTRVSG+D
Sbjct: 839  LFRSIFYRTYMDQEKKIGMTVMEEFERPTRSTTLRMKHGTYDKLEDDGLIAPGTRVSGDD 898

Query: 875  VIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
            +IIGKT P+  D E  GQ ++ + +RD S  LR +E+G+VDQV++TTN +GL+FVKVR+R
Sbjct: 899  IIIGKTAPVPPDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMR 958

Query: 933  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
            S RIPQIGDKF+SRHGQKGT+GMTY  EDMP++ +GI PDII+NPHAIPSRMT+  L+EC
Sbjct: 959  STRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVEC 1018

Query: 993  IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1052
             + KV+A  G EGDATPFT+VTV+ +SK L   G+  RGFE MY+GHTGR+L A +FLGP
Sbjct: 1019 QLSKVSALSGLEGDATPFTEVTVEAVSKLLRSHGFHSRGFEVMYHGHTGRKLVAQVFLGP 1078

Query: 1053 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 1112
            TYYQRLKH+VDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERDC I+HG S  L+E
Sbjct: 1079 TYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRE 1138

Query: 1113 RLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1172
            RLFD SDAYRV VC+ CGLIAIA+ KKNS+ECR C+N+T   Q+++PYA KLLFQELM+M
Sbjct: 1139 RLFDCSDAYRVIVCDLCGLIAIASFKKNSYECRSCQNRTRFSQIYLPYAAKLLFQELMSM 1198

Query: 1173 AIAPRMLTK 1181
             IAPR+ TK
Sbjct: 1199 NIAPRLFTK 1207


>gi|70906409|gb|AAZ14928.1| DNA-dependent RNA polymerase II second largest subunit [Coprinellus
            disseminatus]
          Length = 1241

 Score = 1598 bits (4138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 771/1216 (63%), Positives = 949/1216 (78%), Gaps = 45/1216 (3%)

Query: 3    EDDYDYEEQHQQEEEDEEE--EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            ++ Y Y++ +   ++D ++  EITQED W VI+++F++KGLVRQQLDSFDEF+QNTMQE+
Sbjct: 25   QEHYSYDDPNYGMDDDGDDFAEITQEDCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQEL 84

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            VDE+AD+ +    QH  G  +D     Y+I FGQIYLS+P +TE+DG    LFP+ ARLR
Sbjct: 85   VDENADLILDQADQHT-GHDTDMTRR-YEIKFGQIYLSRPTVTEADGSVFPLFPQEARLR 142

Query: 121  NLTYSAPLYVDVTKRVIKKGHDGEEV-------TETQDF---TKVFIGKVPIMLRSSYCT 170
            NLTYS+PLYV++ KRV+    D + V       TE +D     K++IGKVPIMLRSS+C 
Sbjct: 143  NLTYSSPLYVEMKKRVLIGREDPDGVPGDIQWETEQEDTGEPEKIWIGKVPIMLRSSFCI 202

Query: 171  LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 230
            L+Q  + +L +L ECPYD GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+   ++AE+
Sbjct: 203  LHQLRDNELYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEI 262

Query: 231  RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            RS  E   +  S   V+M  R   +  S G  ++AT+PYI+ +IPI +VFRALG ++D+D
Sbjct: 263  RSAVEKGGKTISQFQVKMFHRNQER--SMGNVMKATIPYIKVDIPIWVVFRALGVISDRD 320

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            ILEHICYD QD QM+E+L+P +++ FVIQ+++VALD+IG RG T G++R++RI+YA+EIL
Sbjct: 321  ILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEIL 380

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            QKEMLPH+   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL GL
Sbjct: 381  QKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGL 440

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q     ++
Sbjct: 441  FRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKQQTITNGLKYSLATGNWGDQKKTMSSK 500

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLV
Sbjct: 501  AGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLV 560

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  L
Sbjct: 561  KNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANL 619

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 649
            VKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+LL++K+ I  L 
Sbjct: 620  VKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKKHIGWLN 679

Query: 650  QRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE-------- 697
              +  +D G    W +L+  G IE +D EEEET MISMT  DL  +R   E         
Sbjct: 680  --DGVDDQGEPYKWENLIKSGVIELLDAEEEETVMISMTPEDLDISRRQAEGEETPENDA 737

Query: 698  -----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746
                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY
Sbjct: 738  EFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIY 797

Query: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806
            +TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIM
Sbjct: 798  LTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIM 857

Query: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 866
            NQSSIDRG FRS+++RSY D EKK G L  E+F +P R  T+ M+HG+YDK++DDG   P
Sbjct: 858  NQSSIDRGLFRSMYYRSYMDLEKKSGALQLEEFEKPTRDTTLRMKHGTYDKIEDDGFIAP 917

Query: 867  GTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGL 924
            GT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTNA+G 
Sbjct: 918  GTNVTGEDIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTENGIVDQVLITTNAEGQ 977

Query: 925  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 984
            +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRM
Sbjct: 978  KFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDLIINPHAIPSRM 1037

Query: 985  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            TIG L+EC++ KVA  +G EGDATPFTD+TV+ +S  L + GYQ RG E MY+GHTGR+L
Sbjct: 1038 TIGHLVECLLSKVATLIGNEGDATPFTDLTVEAVSNFLRQKGYQSRGLEVMYHGHTGRKL 1097

Query: 1045 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1104
             A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+H
Sbjct: 1098 QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISH 1157

Query: 1105 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKL 1164
            G + FLKERLF+ SDAYR+HVC+ CGL AIANLKK SFECR CKNKT   Q++IPYA KL
Sbjct: 1158 GIAGFLKERLFEASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKL 1217

Query: 1165 LFQELMAMAIAPRMLT 1180
            LFQEL +M IA R+ T
Sbjct: 1218 LFQELQSMNIAARLYT 1233


>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
            versicolor FP-101664 SS1]
          Length = 1231

 Score = 1597 bits (4136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 766/1200 (63%), Positives = 942/1200 (78%), Gaps = 45/1200 (3%)

Query: 21   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 80
            EEITQED W VIS++F++KGLVRQQLDSFDEF+QNTMQE+VDE+AD+ +    QH  G +
Sbjct: 29   EEITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHT-GHE 87

Query: 81   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
            SD     Y+I FGQIYLS+P +TE+DG    +FP+ ARLRNLTYSAPLY+++ KRV+   
Sbjct: 88   SDVTRR-YEIKFGQIYLSRPTVTEADGSVVPIFPQEARLRNLTYSAPLYIEMKKRVLLGR 146

Query: 141  HD-----GEEVTETQ------DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ 189
             D     G+ V ET+      D  KV+IGKVPIMLRS++C L+   + +L +L ECPYD 
Sbjct: 147  EDPDSATGDMVWETEHDDNPEDTRKVWIGKVPIMLRSTFCILHGLEDDELYDLNECPYDS 206

Query: 190  GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 249
            GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+  +++AE+RS  E   +  S   V++ 
Sbjct: 207  GGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLY 266

Query: 250  SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 309
             R+  +  S G  ++AT+PYI+ +IPI +VFRALG ++D+DILEHICYD QD QM+E+L+
Sbjct: 267  HRSQER--SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLK 324

Query: 310  PSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKA 369
            P ++E FVIQ++++ALDYIG RG T G+ R++R++YA+EILQKEMLPHV   +  E+KKA
Sbjct: 325  PCIDEGFVIQDREIALDYIGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKA 384

Query: 370  YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC 429
            Y+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKC
Sbjct: 385  YFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKC 444

Query: 430  VDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHL 488
            V+  K+  L  A+K  TIT+GLKYSLATGNWG Q     ++AGVSQVLNR TYASTLSHL
Sbjct: 445  VETHKEFQLGLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHL 504

Query: 489  RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
            RR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++
Sbjct: 505  RRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVI 564

Query: 549  EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV 608
            EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV V
Sbjct: 565  EFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISAEVSV 623

Query: 609  VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ-RESPEDGG------WHD 661
            VRDIR +ELR+YTD GR  RPLFIVE Q+LL++K+ I  L + +E PE         W +
Sbjct: 624  VRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKKHIENLARGKEEPEKDATKFEYKWDN 683

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLH-----PEE--------------AYADT 702
            L+  G IE +D EEEET MI MT  DL  +RL      P E                A T
Sbjct: 684  LIKDGVIELLDAEEEETVMICMTPEDLENSRLQSAGIDPHENDGELDPSARLKAPTNAHT 743

Query: 703  YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 762
            +THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LY
Sbjct: 744  WTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILY 803

Query: 763  YPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR 822
            YPQKPL TTR+ME+L FR+LPAG NA+VAI CYSGYNQEDSVIMNQSSIDRG FRS+++R
Sbjct: 804  YPQKPLATTRSMEYLKFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYR 863

Query: 823  SYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
            SY D EKK G    E+F +P R +T+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT P
Sbjct: 864  SYMDLEKKSGIQQLEEFEKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAP 923

Query: 883  ISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 940
            I  D E  GQ +R +T+RD S  L+ +E G++DQVL+TTNA+G +FVK+RVRS RIPQIG
Sbjct: 924  IPPDSEELGQRTRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIG 983

Query: 941  DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 1000
            DKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ KVA  
Sbjct: 984  DKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATL 1043

Query: 1001 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            +G EGDATPFTD+TV+++S+ L + GYQ RG E MY+GHTGR++ A ++LGPTYYQRLKH
Sbjct: 1044 IGNEGDATPFTDLTVESVSQFLRQKGYQSRGLEIMYHGHTGRKIQAQVYLGPTYYQRLKH 1103

Query: 1061 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDA 1120
            MVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLKERLF+ SDA
Sbjct: 1104 MVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERLFEASDA 1163

Query: 1121 YRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            YR+HVC+ CGL AIANLKK +FECR C+NKT   Q++IPYA KLLFQEL +M IA R+ T
Sbjct: 1164 YRLHVCDICGLTAIANLKKQTFECRACRNKTACSQIYIPYAAKLLFQELQSMNIAARLYT 1223


>gi|298705314|emb|CBJ49004.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1277

 Score = 1597 bits (4135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 760/1192 (63%), Positives = 921/1192 (77%), Gaps = 34/1192 (2%)

Query: 15   EEEDE----EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70
            ++EDE    EE+I+QEDAW VISAYF EKGLVRQQLDSFDEF+Q+TM E+V  + +I+I 
Sbjct: 91   DDEDELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKIT 150

Query: 71   PESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
            PE Q+ PGQ  D     ++I+FGQ+YL+KP   E DG   ++FP  ARLRNLTY++PLY 
Sbjct: 151  PELQYMPGQ--DTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYC 208

Query: 131  DVTKRVIKK--GHDGEEVTETQDFT------KVFIGKVPIMLRSSYCTLYQNSEKDLTEL 182
            D++ +  +   G   +E  E  +        K F+G VPIMLRSS+C L   ++K+LTEL
Sbjct: 209  DISCKTYEADVGDRSQEDGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTEL 268

Query: 183  GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS 242
            GEC YDQGGYF+INGSEKVLIA E+MSTNHVY FKKRQP+K+ + +E+RS  ++  RPPS
Sbjct: 269  GECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPS 328

Query: 243  TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDT 302
            +MF++M ++ +     +G +IRA LPYIRT++P+++VFRALG+  DK ILEHI YDF DT
Sbjct: 329  SMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDT 388

Query: 303  QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
             MME  RPSLEEA VIQNQ VA D+IGKRG+ V V R++RI YAK +LQ+E LPHVG G 
Sbjct: 389  DMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGA 448

Query: 363  FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
              E KK ++ GY++H+LL+C+LGR  EDDRDHYG KRLDLAG LL GLFR LFRKLT++V
Sbjct: 449  GTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNV 508

Query: 423  RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA 482
            R Y+Q C+D G    +  AIK++ IT GLKYSLATGNWG    A T+AGVSQVLNRLTYA
Sbjct: 509  RKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTA-TKAGVSQVLNRLTYA 567

Query: 483  STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 542
            S LSHLRRLN+P+GREGK AKPRQLHN+ WG +CPAETPEGQA GLVKNLALM YI+VG 
Sbjct: 568  SALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGC 627

Query: 543  AAYPILEFLEEWGTENFEEISPAVIPQ--ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            +  PILEFLEEW  EN +EI+P +I Q   TK+FVNG WVG+HRDP  LV+TL   RR +
Sbjct: 628  SLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRAL 687

Query: 601  DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWH 660
            D++ EV VVRDI+ +ELR+YTD GR  RPLF+VE  RL I+K+ I  L       + GW 
Sbjct: 688  DIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVENNRLRIRKKHINDLHD----PNYGWT 743

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASI 720
            +L+ +G +EYIDTEEEETTM++M   DL ++       Y+ TYTHCEIHPS+ILGVCASI
Sbjct: 744  NLMQQGVVEYIDTEEEETTMVAMEPKDLEES-----GGYSSTYTHCEIHPSMILGVCASI 798

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMGIY +NYQ RMDTLA+VL+YP+KPLVTTRAMEHLHFR
Sbjct: 799  IPFPDHNQSPRNTYQSAMGKQAMGIYASNYQLRMDTLAHVLHYPEKPLVTTRAMEHLHFR 858

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK------MGTL 834
            +LP+G N IV I  YSGYNQEDS+IMNQS++DRG FRS FFR+  D+EK       M  L
Sbjct: 859  ELPSGFNVIVGIMVYSGYNQEDSLIMNQSAVDRGLFRSSFFRTLNDQEKAGRGMGDMAVL 918

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR 894
              E F RP R NT GM+HG+YDKL++DGL  PGTRVSG DV+IGKTTP+    A      
Sbjct: 919  SAESFERPARENTAGMKHGNYDKLEEDGLVAPGTRVSGTDVLIGKTTPLGGGVAGVTGGP 978

Query: 895  YTR--RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
              R  +D S  +R  E G+VD+V+LTTN +G +F KVR+R+VR+PQIGDKF+SRHGQKGT
Sbjct: 979  GHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKVRIRNVRVPQIGDKFASRHGQKGT 1038

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            +GMTY QEDMPW+++GI PDIIVNPHAIPSRMTI QLIEC++GKV    G EGDATPFTD
Sbjct: 1039 IGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTD 1098

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 1072
            VTV N+S  LHK G+Q  G E MY+GHTGR L   +FLGPT+YQRLKH+VDDKIHSR RG
Sbjct: 1099 VTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRG 1158

Query: 1073 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 1132
            PV  LTRQP EGR RDGGLR GEMERDC+I+HG ++FL++RLF  SDAYRVHVC+ CGLI
Sbjct: 1159 PVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLI 1218

Query: 1133 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDT 1184
            A+ANL+K SFECRGCK K+D+ Q+H+PYACKLLFQELMAM IAPRM  + D 
Sbjct: 1219 AVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMFVRADA 1270


>gi|169844839|ref|XP_001829140.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
 gi|116509880|gb|EAU92775.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
          Length = 1222

 Score = 1595 bits (4131), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 764/1213 (62%), Positives = 947/1213 (78%), Gaps = 40/1213 (3%)

Query: 3    EDDYDYEE-QHQQEEEDEE-EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            +D Y +++  + QEE DE+   ITQED W VIS++F++KGLVRQQLDSFDEF+QNTMQE+
Sbjct: 7    QDHYAFDDPNYGQEEYDEDYAPITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQEL 66

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            VDE++D+ +    QH  GQ  D     Y+I FGQIYLS+P +TE+DG    +FP+ ARLR
Sbjct: 67   VDENSDLILDQADQHT-GQAGDMTRR-YEIKFGQIYLSRPTVTEADGSVVPVFPQEARLR 124

Query: 121  NLTYSAPLYVDVTKRVIKKGHD----GEEVTETQ------DFTKVFIGKVPIMLRSSYCT 170
            NLTYSAPLY+++ KRV+    D    G+   E +      D  K++IGKVPIMLRSS+C 
Sbjct: 125  NLTYSAPLYIEMRKRVLVGREDPAVPGDITWEAEHEDTDGDAAKIWIGKVPIMLRSSFCI 184

Query: 171  LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 230
            L++  ++DL +L ECPYD GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+   ++AE+
Sbjct: 185  LHELRDQDLYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEI 244

Query: 231  RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            RS  E   +  S   V+M  R   +  S G  ++AT+PYI+ +IPI +VFRALG ++D+D
Sbjct: 245  RSAVERGGKTISQFQVKMFHRNQER--SLGNVMKATIPYIKVDIPIWVVFRALGVISDRD 302

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            ILEHICYD QD QM+E+L+P +++ FVIQ+++VALD+IG RG T G+ RD+RI+YA+EIL
Sbjct: 303  ILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLPRDRRIRYAQEIL 362

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            QKEMLPH+   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  L
Sbjct: 363  QKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANL 422

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++
Sbjct: 423  FRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSK 482

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLV
Sbjct: 483  AGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLV 542

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  L
Sbjct: 543  KNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVNGVWMGVHRDPANL 601

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDI--IA 647
            VKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L+++K+ +  +A
Sbjct: 602  VKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKKHVRWLA 661

Query: 648  LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE---------- 697
              + +  E+  W +L+  G +E +D EEEET MI MT  DL  +R   E           
Sbjct: 662  NSENDDGEEWKWENLIKSGIVELLDAEEEETVMICMTPEDLEVSRRQSEGMEIQDHEDYD 721

Query: 698  --------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 749
                     +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN
Sbjct: 722  PAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTN 781

Query: 750  YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 809
            +  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG N+IVAI CYSGYNQEDSVI+NQS
Sbjct: 782  FLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNSIVAILCYSGYNQEDSVIVNQS 841

Query: 810  SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 869
            SIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK++DDGL  PGT 
Sbjct: 842  SIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKIEDDGLIAPGTN 901

Query: 870  VSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 927
            V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FV
Sbjct: 902  VTGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFV 961

Query: 928  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
            KVRVRS RIPQIGDKF+SRHGQKGT+G+ Y QEDMP+T EGI PD+I+NPHAIPSRMTIG
Sbjct: 962  KVRVRSTRIPQIGDKFASRHGQKGTIGIAYRQEDMPFTAEGIVPDLIINPHAIPSRMTIG 1021

Query: 988  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1047
             L+EC++ KVA  +G EGDATPFTD+TV+ +S  L + GYQ RG E MY+GHTGR+L A 
Sbjct: 1022 HLVECLLSKVATLIGNEGDATPFTDLTVEGVSTFLRQRGYQSRGLEVMYHGHTGRKLQAQ 1081

Query: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 1107
            ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG +
Sbjct: 1082 VYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIA 1141

Query: 1108 HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1167
             FLKERLFD SDAYR+HVC+ CGL AIANLKK SFECR CKNKT   Q++IPYA KLLFQ
Sbjct: 1142 GFLKERLFDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQ 1201

Query: 1168 ELMAMAIAPRMLT 1180
            EL +M IA R+ T
Sbjct: 1202 ELQSMNIAARLYT 1214


>gi|312381454|gb|EFR27200.1| hypothetical protein AND_06234 [Anopheles darlingi]
          Length = 1954

 Score = 1595 bits (4129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 773/1155 (66%), Positives = 916/1155 (79%), Gaps = 20/1155 (1%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            Y+ E+ H +EE+ EE   E+ QE  W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YENEDDHFEEEDPEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            S  IE+  E+QH+ G+  +   T Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   SPAIELTAEAQHSSGEIEN--PTRYLLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK  I +G D     ETQ   K FIGK+PIMLRS+YC L Q +++DLTEL 
Sbjct: 120  YSAPLYVDITKTKIVEGQDP---VETQ-HQKTFIGKIPIMLRSTYCLLSQLTDRDLTELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY  E+RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKTEIRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R   S K  + GQ + A LPY++ EIPI+IVFRALGFVAD+DILEHI YDF D
Sbjct: 235  LWVNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFV+Q Q VAL++IG RGA  GVT+DKRIKYAKEILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL++K  I  L+ R+   + GW
Sbjct: 595  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGSLLLRKHHIDMLKDRDY-NNYGW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
              LVA G +EYIDT EEET MI+MT  DL Q +   E AY  TYTHCEIHP++ILGVCAS
Sbjct: 654  QVLVASGVVEYIDTLEEETVMIAMTPYDLKQDK---EYAYCTTYTHCEIHPAMILGVCAS 710

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L F
Sbjct: 711  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRF 770

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F
Sbjct: 771  RELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQF 830

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P+R    GMR+  YDKLD+DG+  PG RVSG+DV+IGKT   P + D+  G   R+T+
Sbjct: 831  EKPNRQTCQGMRNALYDKLDEDGIIAPGLRVSGDDVVIGKTITLPETDDDLDGTTKRFTK 890

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 891  RDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 950

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
             QEDMP+T EGITPDII+NPHAIPSRMTIG LIECI GK+ ++ G+ GDATPF D V V 
Sbjct: 951  RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATPFNDAVNVQ 1010

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 1011 KISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 1070

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+HVC  CGLIAIAN
Sbjct: 1071 LVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 1130

Query: 1137 LKKNSFECRGCKNKT 1151
            L+ N+FEC+GCKNKT
Sbjct: 1131 LRNNTFECKGCKNKT 1145


>gi|427798029|gb|JAA64466.1| Putative rna polymerase i second largest subunit, partial
            [Rhipicephalus pulchellus]
          Length = 1149

 Score = 1593 bits (4125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 779/1160 (67%), Positives = 919/1160 (79%), Gaps = 24/1160 (2%)

Query: 8    YEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YE +     EDE EEIT    QE  W VISAYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YEAEEDGFGEDESEEITPDLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   TPQIDLQAEAQHTSGEIENPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK V+K   + EE  ETQ   K FIGK+PIMLRS+YC L   +++DL+EL 
Sbjct: 120  YSAPLYVDITKTVLK---ENEEAVETQ-HQKTFIGKIPIMLRSTYCLLNNLTDRDLSELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF+ +  +KYAY AE RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFQMKD-SKYAYKAECRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R     +  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF+D
Sbjct: 235  LWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKY+KEILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGARPGVTKEKRIKYSKEILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAYY GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPL+  LFR LFR LT++
Sbjct: 355  DFCETKKAYYLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRGLFRNLTKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKT-ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRL 479
            VR Y QK +D GKD NL+ AIK    IT GL+YSLATGNWG Q  A   RAGVSQVLNRL
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTXXXITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRL 474

Query: 480  TYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 539
            TYASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+
Sbjct: 475  TYASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMSYIS 534

Query: 540  VGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRR 599
            VGS   PILEFLEEW  EN EEI+P+ I +ATKIFVNGCWVGIHRDP+ L+ TLR+LRR+
Sbjct: 535  VGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRDPDQLMNTLRKLRRQ 594

Query: 600  VDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG 658
            +D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+LL+K+R I  L+ RE   +  
Sbjct: 595  MDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEDQKLLLKRRHIDNLKDREY-NNYS 653

Query: 659  WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCA 718
            W DLVA G +EYIDT EEET M+SMT +DL    L    AY  TYTHCEIHPS+ILGVCA
Sbjct: 654  WQDLVASGVVEYIDTLEEETVMLSMTPDDLQDKGL----AYCSTYTHCEIHPSMILGVCA 709

Query: 719  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 778
            SIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDTLA+VLYYP KPL TTR+ME+L 
Sbjct: 710  SIIPFPDHNQSPRNTYQSAMGKQAMGIYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLR 769

Query: 779  FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 838
            FR+LPAGIN+IVAI  Y+GYNQEDS+I+N S++DRGFFRS+F+RSY+D E K     +E 
Sbjct: 770  FRELPAGINSIVAIMSYTGYNQEDSIIVNASAVDRGFFRSVFYRSYKDSECKRVGDQEEQ 829

Query: 839  FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYT 896
            F +P R    GMR+  YDKLDDDG+  PGTRVSG+DVIIGKT   P + D+ +    R+T
Sbjct: 830  FEKPTRETCQGMRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLESTNRRFT 889

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            +RD S  LR+SETG+VDQV+LT NA+G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+T
Sbjct: 890  KRDASTFLRNSETGIVDQVMLTVNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIT 949

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTV 1015
            Y QEDMP+T EG+TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V
Sbjct: 950  YRQEDMPFTAEGLTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDSVNV 1009

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1075
              IS  L + GY +RG E M+NGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQ
Sbjct: 1010 QKISNLLQEYGYHLRGNEVMFNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQ 1069

Query: 1076 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIA 1135
            IL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR H+C  CGL+AIA
Sbjct: 1070 ILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRAHICNLCGLLAIA 1129

Query: 1136 NLKKNSFECRGCKNKTDIVQ 1155
            NL+ N+FEC+GC+NKT I Q
Sbjct: 1130 NLRNNTFECKGCRNKTQISQ 1149


>gi|449550934|gb|EMD41898.1| hypothetical protein CERSUDRAFT_110450 [Ceriporiopsis subvermispora
            B]
          Length = 1242

 Score = 1593 bits (4125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 763/1208 (63%), Positives = 937/1208 (77%), Gaps = 56/1208 (4%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ITQED W VIS++FE+KGLVRQQLDSFDEF+QNTMQE+VDE++D+ +    QH  G ++D
Sbjct: 33   ITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHT-GHEAD 91

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                 Y+I FGQIYLS+P +TE+DG    +FP+ AR RNLTYSAPLY+++ KRV+    D
Sbjct: 92   VTRR-YEIKFGQIYLSRPTVTEADGSVVPVFPQEARQRNLTYSAPLYIEIKKRVLIGRED 150

Query: 143  GEEVT-----------ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
             +  T             +D TKV+IGKVPIMLRS++C L+   + +L +L ECPYD GG
Sbjct: 151  PDSATGDILWEPEQRETAEDTTKVWIGKVPIMLRSTFCILHNVQDSELYDLNECPYDSGG 210

Query: 192  YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR 251
            YFIINGSEKVLIAQE+M+TNHVYVF K QP+  +++AE+RS  E   +  S   V++  R
Sbjct: 211  YFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVERGGKTISQFQVKLYHR 270

Query: 252  TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPS 311
               +  S G  ++AT+PYI+ +IPI +VFRALG ++D+DILEHICYD QD QM+E+L+P 
Sbjct: 271  NQER--SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPC 328

Query: 312  LEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYY 371
            +++ FVIQ+++VALD+IG RG T G+ R++R++YA+EILQKEMLPHV   +  E+KKAY+
Sbjct: 329  IDDGFVIQDREVALDFIGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYF 388

Query: 372  FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 431
            FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+
Sbjct: 389  FGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVE 448

Query: 432  NGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRR 490
            + K+ NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR
Sbjct: 449  SHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRR 508

Query: 491  LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 550
             N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EF
Sbjct: 509  CNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSLSAPVIEF 568

Query: 551  LEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVR 610
            LEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVR
Sbjct: 569  LEEWGLESLEENAHSATP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVR 627

Query: 611  DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPE------------DGG 658
            DIR +ELRIYTD GR  RPLFIVE Q+LL+ K+ I  L + +  E            +G 
Sbjct: 628  DIRERELRIYTDAGRVCRPLFIVEDQQLLLTKKHISWLSRSKEEEKQRMSRGEDKDAEGA 687

Query: 659  ----WHDLVAKGFIEYIDTEEEETTMISMTINDL--------------------VQARLH 694
                W +L+  G IE +D EEEET MI M+  DL                      ARL 
Sbjct: 688  YVYRWDNLIKDGVIELLDAEEEETVMICMSPEDLENTRLIAAGVDPRADSTEVDPSARLK 747

Query: 695  PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
            P  +   TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RM
Sbjct: 748  PTPSI-HTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRM 806

Query: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
            DT+A +LYYPQKPL TTR+ME+L FR+LPAG NA+VAI CYSGYNQEDSVIMNQSSIDRG
Sbjct: 807  DTMANILYYPQKPLATTRSMEYLRFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRG 866

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
             FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDKL+DDGL  PGT V+GED
Sbjct: 867  LFRSIYYRSYMDLEKKSGVQQLEEFEKPSRENTLRMKHGTYDKLEDDGLIAPGTGVNGED 926

Query: 875  VIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
            +IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++DQVL+TTNA+G +FVK+RVR
Sbjct: 927  IIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVR 986

Query: 933  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
            S RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI++NPHAIPSRMTIG L+EC
Sbjct: 987  STRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVEC 1046

Query: 993  IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1052
            ++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG E MY+GHTGR+L A ++LGP
Sbjct: 1047 LLSKVATLIGNEGDATPFTDLTVESVSQVLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGP 1106

Query: 1053 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 1112
            TYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLKE
Sbjct: 1107 TYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKE 1166

Query: 1113 RLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1172
            RLF+ SDAYR+HVC+ CGL AIANLKK  FECR CKNKT I Q++IPYA KLLFQEL +M
Sbjct: 1167 RLFEASDAYRLHVCDICGLTAIANLKKQMFECRSCKNKTAISQLYIPYAAKLLFQELQSM 1226

Query: 1173 AIAPRMLT 1180
             IA R+ T
Sbjct: 1227 NIAARLYT 1234


>gi|390604597|gb|EIN13988.1| DNA-dependent RNA polymerase II second largest subunit [Punctularia
            strigosozonata HHB-11173 SS5]
          Length = 1247

 Score = 1591 bits (4120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 765/1218 (62%), Positives = 944/1218 (77%), Gaps = 57/1218 (4%)

Query: 15   EEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 74
            +E+ +EEEITQED W VIS++F++KGLVRQQLDSFDEF+QNTMQE+VDE++D+ +    Q
Sbjct: 24   DEDADEEEITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQ 83

Query: 75   HNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 134
            H  G  +D     Y+I FGQIYLS+P +TE+DG    +FP+ ARLRNLTY+APLY+++ K
Sbjct: 84   HT-GSATDMTRR-YEIKFGQIYLSRPTVTEADGSVMPVFPQEARLRNLTYNAPLYIEMRK 141

Query: 135  RVI-----KKGHDGEEVTE------TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            R +      +G  G+ + +       +D  KV+IGKVPIMLRS++C L+   E DL +L 
Sbjct: 142  RTLIGREDPEGAPGDVIWQEEPGDAAEDSRKVWIGKVPIMLRSTFCILHDIPENDLFDLN 201

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECPYD GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+  +++AE+RS  E   +  S 
Sbjct: 202  ECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQ 261

Query: 244  MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQ 303
              V+M +R   +  S G  I+AT+PYI+ +IPI +VFRALG ++D+DILEHICYD QD Q
Sbjct: 262  FQVKMYTRNQER--SLGNLIKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQ 319

Query: 304  MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDF 363
            M+E+L+P +++ F IQ++++ALD+IG RG T G+++++R++YA+EILQKEMLPHV   + 
Sbjct: 320  MLEMLKPCIQDGFAIQDREIALDFIGNRGTTTGLSKERRLRYAQEILQKEMLPHVSMAEG 379

Query: 364  CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 423
             E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV 
Sbjct: 380  SESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVY 439

Query: 424  AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYA 482
             Y+QKC++ GK  NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR TYA
Sbjct: 440  RYLQKCIETGKQFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYA 499

Query: 483  STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 542
            STLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS
Sbjct: 500  STLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATISVGS 559

Query: 543  AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV 602
             + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D+
Sbjct: 560  ISAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPLNLVKTIKKLRRKDDI 618

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESP---EDGG- 658
            + E  VVRDIR +ELRI TD GR  RPLFIVE Q+L++KK  I  L +  +    +D G 
Sbjct: 619  SPETSVVRDIRERELRISTDAGRVCRPLFIVENQQLVLKKSHIEKLHKHNTEPVLDDAGA 678

Query: 659  ---------------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH-----PEE- 697
                           + +LV +G IEY+D EEEET MI MT  DL  ARL      P + 
Sbjct: 679  PTFDENGKQRFFQYQFDELVKEGVIEYLDAEEEETVMICMTPEDLENARLKQQGHDPSQD 738

Query: 698  -------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
                           A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 739  DPDFDPAARIKTGTQAHLWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 798

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            IY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSV
Sbjct: 799  IYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIMCYSGYNQEDSV 858

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRS++FRSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL 
Sbjct: 859  IMNQSSIDRGLFRSMYFRSYMDMEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLI 918

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNAD 922
             PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G VDQVL+TTN++
Sbjct: 919  APGTNVNGEDIIIGKTAPIPPDSEELGQRTRGHTRRDVSTPLKSTEQGTVDQVLITTNSE 978

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            G +FVKVR+RS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPS
Sbjct: 979  GQKFVKVRIRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPS 1038

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG E MY+GHTGR
Sbjct: 1039 RMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQRGYQSRGLEVMYHGHTGR 1098

Query: 1043 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102
            +L A I+LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI
Sbjct: 1099 KLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMI 1158

Query: 1103 AHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC 1162
            +HG + FLKERLF+ SDAYR+HVC+ CGL AIANLKK +FECR CKNKT+  Q++IPYA 
Sbjct: 1159 SHGIAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRACKNKTECSQLYIPYAA 1218

Query: 1163 KLLFQELMAMAIAPRMLT 1180
            KLLFQEL +M IA R+ T
Sbjct: 1219 KLLFQELQSMNIAARLYT 1236


>gi|324500827|gb|ADY40377.1| DNA-directed RNA polymerase II subunit RPB2 [Ascaris suum]
          Length = 1173

 Score = 1591 bits (4120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 772/1186 (65%), Positives = 918/1186 (77%), Gaps = 28/1186 (2%)

Query: 8    YEEQHQQE---EEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            Y+E   +E   E DEEEEI+    QE  W VISAYF+EKGLVRQQLDSFDEFIQ  +Q I
Sbjct: 2    YDEDEGEEMPFEGDEEEEISSEQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRI 61

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            V++S  +E++ E QH  G   +   T + +   QIYLSKP   E DG    + P  ARLR
Sbjct: 62   VEDSPPVELQSEVQHFSGDIEN--PTKFALKLDQIYLSKPTHWEKDGAPTPMMPNEARLR 119

Query: 121  NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 180
            NLTYS+PLYVD+TK V + G D +E      + KVF+GK+PIMLRSSYC L   S++DLT
Sbjct: 120  NLTYSSPLYVDITKTVSRDGEDPKE----SKYEKVFVGKIPIMLRSSYCMLSNMSDRDLT 175

Query: 181  ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240
            EL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY  E RS  E+ +RP
Sbjct: 176  ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKTECRSCLENSSRP 234

Query: 241  PSTMFVRMLSRT-SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 299
             ST++V M++R  S K  + GQ I A LPYI+ EIPI+IVFRALGFV+D DILEHI YDF
Sbjct: 235  TSTLWVNMMARGGSTKKSAMGQRIIAILPYIKQEIPIMIVFRALGFVSDHDILEHIIYDF 294

Query: 300  QDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVG 359
            +D +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RIKYAKEILQKEMLPHVG
Sbjct: 295  EDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTKEQRIKYAKEILQKEMLPHVG 354

Query: 360  TGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 419
              DFCETKKAY+ GY++HRLLL ALGRR  DDRDH GNKRLDLAGPLL  LFR LF+ L 
Sbjct: 355  ISDFCETKKAYFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRALFKNLL 414

Query: 420  RDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNR 478
            ++VR   QK ++   D  L   +K  TIT GL YSLATGNWG Q  A  +RAGVSQVLNR
Sbjct: 415  KEVRLTAQKYINKNGDFILDACVKTSTITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNR 474

Query: 479  LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
            LTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI
Sbjct: 475  LTYTATLSHLRRCNSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYI 534

Query: 539  TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRR 598
            +VGS   PILEFLEEW  EN EE++P+ I  ATKIFVNG WVGIHRDPE L+ TL++LRR
Sbjct: 535  SVGSLPEPILEFLEEWSMENLEEVAPSAIADATKIFVNGAWVGIHRDPEQLMSTLKKLRR 594

Query: 599  RVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG 657
             +D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L++KK+ I  L  +++ ++ 
Sbjct: 595  EMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLVLKKKHIDQL--KDTNDNY 652

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVC 717
             W DLVA G +E ID  EEET M++M   DL          Y DTYTHCEIHP++ILGVC
Sbjct: 653  AWSDLVAGGVVELIDAMEEETVMLAMMPEDLKAG------GYCDTYTHCEIHPAMILGVC 706

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTTR+ME+L
Sbjct: 707  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYL 766

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
             F +LPAGINAIVAI  Y+GYNQEDSVIMNQS IDRG FRS+F+RSYRD+E  +    +E
Sbjct: 767  RFNELPAGINAIVAILSYTGYNQEDSVIMNQSGIDRGLFRSVFYRSYRDQEANLDNANEE 826

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRY 895
               +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   P  +D+ +    +Y
Sbjct: 827  LIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDVEDDLEANTKKY 886

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
            T+RD S  LR SETG+VDQV+LT N DG +FVK+RVRSVR+PQIGDKF+SRHGQKGT+G+
Sbjct: 887  TKRDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRHGQKGTMGI 946

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VT 1014
             Y QEDMP+T EGITPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATPF D V 
Sbjct: 947  MYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVN 1006

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1074
            V  IS  L + GY +RG E MYNGHTG +LT  +FLGPTYYQRLKHMVDDKIHSR RGPV
Sbjct: 1007 VQKISNLLSEYGYHLRGNEIMYNGHTGHKLTTQVFLGPTYYQRLKHMVDDKIHSRARGPV 1066

Query: 1075 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAI 1134
            Q++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V+VC +CGLI I
Sbjct: 1067 QMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVYVCNNCGLIVI 1126

Query: 1135 ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            ANL+ N+FEC+ C+NKT +  + IPYACKLLFQELM+M+IAPR++ 
Sbjct: 1127 ANLRTNTFECKACRNKTQVSAIRIPYACKLLFQELMSMSIAPRLMV 1172


>gi|393244464|gb|EJD51976.1| DNA-dependent RNA polymerase II second largest subunit [Auricularia
            delicata TFB-10046 SS5]
          Length = 1217

 Score = 1590 bits (4118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 760/1193 (63%), Positives = 937/1193 (78%), Gaps = 40/1193 (3%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            +ITQED W +IS++FEEKGLVRQQLDSFDEF+QNTMQE+VDE+A++ +    QH  GQ+ 
Sbjct: 23   DITQEDCWTIISSFFEEKGLVRQQLDSFDEFVQNTMQELVDENAELILHQGDQHT-GQEG 81

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR------ 135
            D A   ++I FGQIYLS+P +TE+DG    +FP+ ARLRNLTYSAPLYV++ +       
Sbjct: 82   D-ANLRHEIKFGQIYLSRPTITEADGSVTPVFPQEARLRNLTYSAPLYVEMRRSRLTGRE 140

Query: 136  -VIKKG-HDGE-EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 192
             + K G +D + +  E+    K++IGKVPIMLRSS+C L   S++DL +L ECPYDQGGY
Sbjct: 141  SMTKPGDYDWQRDPNESTTMQKIWIGKVPIMLRSSFCILKTLSDRDLYDLNECPYDQGGY 200

Query: 193  FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRT 252
            FIINGSEKVLIAQE+M+ NHVYVF K QP+   ++AE+RS  E   +  S+  V+M  R 
Sbjct: 201  FIINGSEKVLIAQERMAANHVYVFAKAQPSPINFLAEIRSAVEKGGKTISSFQVKMFHRN 260

Query: 253  SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSL 312
              K  +SG  I+AT+PYI+ +IPI IVFRALG ++D+DILEHICYD  D  M+E+L+P +
Sbjct: 261  QEK--TSGNTIKATIPYIKQDIPIWIVFRALGVMSDRDILEHICYDMHDVTMLEMLKPCI 318

Query: 313  EEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 372
            +E FVIQ ++ AL +IG RG T G+ +++R++YA+EILQKEMLPH+   +  E+KKAY+ 
Sbjct: 319  DEGFVIQEREQALSFIGVRGTTTGLNKERRLRYAQEILQKEMLPHISMAEGSESKKAYFL 378

Query: 373  GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 432
            GY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+ 
Sbjct: 379  GYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLASLFRMLFRKLTKDVYRYLQKCVEA 438

Query: 433  GKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRL 491
             K+ NL  A+KA TIT+GLKYSLATGNWG Q  +   +AGVSQVLNR T+ASTLSHLRR 
Sbjct: 439  RKEFNLSLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTFASTLSHLRRT 498

Query: 492  NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 551
            N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFL
Sbjct: 499  NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFL 558

Query: 552  EEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRD 611
            EEWG E+ EE + + +P +TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRD
Sbjct: 559  EEWGLESLEENAHSGVP-STKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRD 617

Query: 612  IRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG---WHDLVAKGFI 668
            IR KELR+YTD GR  RPLFIVE Q+L+IKK  +  +Q +E  E G    W +L+  G I
Sbjct: 618  IREKELRLYTDAGRVCRPLFIVEDQQLVIKKHHVEWIQNKED-ESGAPYKWDNLIKTGVI 676

Query: 669  EYIDTEEEETTMISMTINDLVQARL-----HPEEA--------------YADTYTHCEIH 709
            E +D EEEET MI MT +DL  +RL      P +A               A T+THCEIH
Sbjct: 677  ELLDAEEEETVMICMTSDDLENSRLMSRGLAPRDADNEFDPAARLKSVVNAHTWTHCEIH 736

Query: 710  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
            PS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+Q R DT+A +LYYPQKPL 
Sbjct: 737  PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVRQDTMANILYYPQKPLA 796

Query: 770  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 829
            TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EK
Sbjct: 797  TTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDVEK 856

Query: 830  KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EA 888
            K G +  E+F +P R  T+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT P+ QD E 
Sbjct: 857  KSGMVALEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPLPQDSEE 916

Query: 889  QGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
             GQ +R + +RD S  L+ +E G+VDQVL+TTN DG +FVK+R+RS R+PQIGDKF+SRH
Sbjct: 917  LGQRTRTHQKRDVSTPLKSTENGIVDQVLITTNQDGQKFVKIRIRSTRVPQIGDKFASRH 976

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGT+G+TY QEDMP+T EG+TPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDA
Sbjct: 977  GQKGTIGITYRQEDMPFTAEGVTPDIIINPHAIPSRMTIGHLVECLLSKVATMIGNEGDA 1036

Query: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            TPFTD+TV+++S+ L + GY  RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIH
Sbjct: 1037 TPFTDLTVESVSQVLRQRGYHSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIH 1096

Query: 1068 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 1127
            SR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLKERLFD SDAYR+HVC+
Sbjct: 1097 SRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGLAAFLKERLFDASDAYRLHVCD 1156

Query: 1128 HCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             CGL AIANLKK SFECR CKNK  + Q++IPYA KLL QEL +M IA R+ T
Sbjct: 1157 ICGLTAIANLKKQSFECRACKNKVAVSQLYIPYAAKLLIQELQSMNIAARLYT 1209


>gi|389751199|gb|EIM92272.1| DNA-dependent RNA polymerase II second largest subunit [Stereum
            hirsutum FP-91666 SS1]
          Length = 1230

 Score = 1589 bits (4115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 756/1196 (63%), Positives = 941/1196 (78%), Gaps = 43/1196 (3%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            I+QED W VIS++F+EKGLVRQQLDSFDEF+QNTMQE+++E+AD+ +    QH  G  +D
Sbjct: 31   ISQEDCWTVISSFFDEKGLVRQQLDSFDEFVQNTMQELIEENADLILDQADQHT-GHDND 89

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR--VIKKG 140
                 Y++ F Q+YLS+  +TE+DG    +FP+ ARLRNLTYS+PLYV+V +R  V ++ 
Sbjct: 90   VTRR-YELHFNQVYLSRATVTEADGSVVPVFPQEARLRNLTYSSPLYVEVARRFSVGRED 148

Query: 141  HDGE--------EVTE--TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
             DG+        EV E  T++F KV+IGK+P+MLRS +C L +  E +L +L ECPYD G
Sbjct: 149  PDGQAGEINWEVEVDEISTKEFQKVWIGKLPLMLRSQFCILSELGENELYDLNECPYDSG 208

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYFIINGSEKVLIAQE+M+TNHVYVF K QP+   ++AE+RS  E   +  S   V+M  
Sbjct: 209  GYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMYH 268

Query: 251  RTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRP 310
            R   K  +SG  I+AT+PYI+ +IPI +VFRALG ++D+DILEHICYD +D QM+E+L+P
Sbjct: 269  RNQDK--TSGNVIKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMEDAQMLEMLKP 326

Query: 311  SLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAY 370
             +++ FVIQ++++ALD+IG RG T G++R++R++YA+EILQKEMLPH+   +  E+KKAY
Sbjct: 327  CIDDGFVIQDREIALDFIGNRGTTTGLSRERRLRYAQEILQKEMLPHISMSEGSESKKAY 386

Query: 371  YFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 430
            +FGY+IHRLLL A+ RR  DDRDH+G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV
Sbjct: 387  FFGYMIHRLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCV 446

Query: 431  DNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLR 489
            +  KD NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLR
Sbjct: 447  ETHKDFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLR 506

Query: 490  RLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE 549
            R N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P+++
Sbjct: 507  RCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATISVGSLSLPVID 566

Query: 550  FLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVV 609
            FLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  L+KT+++LRR+ D++ EV +V
Sbjct: 567  FLEEWGLESLEENAHSATP-TTKVFVNGVWMGVHRDPANLIKTIKKLRRKDDIHPEVSIV 625

Query: 610  RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGF 667
            RDIR +ELR+YTD GR  RPLF+VE Q+L + K+ I  L +   ++ E+  W++L+  G 
Sbjct: 626  RDIRERELRLYTDAGRVCRPLFVVEDQQLAVTKKHINMLTRGTDDNGEEFKWNNLIKSGV 685

Query: 668  IEYIDTEEEETTMISMTINDLVQARL-------HPEEAYAD--------------TYTHC 706
            +EY+D EEEET MI MT  DL  +RL       H E++  D              T+THC
Sbjct: 686  VEYLDAEEEETVMICMTPEDLENSRLQSSGINPHAEDSDFDPAARLKASSGLNTHTWTHC 745

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            EIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQK
Sbjct: 746  EIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQK 805

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
            PL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D
Sbjct: 806  PLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMD 865

Query: 827  EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 886
             EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D
Sbjct: 866  LEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPD 925

Query: 887  -EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
             E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN +G +FVKVRVR+ RIPQIGDKF+
Sbjct: 926  SEELGQRTRIHTRRDVSTPLKSTESGIVDQVLITTNHEGQKFVKVRVRATRIPQIGDKFA 985

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT+G+TY QEDMP+T EGITPDI++NPHAIPSRMTIG L+EC++ KVA  +G E
Sbjct: 986  SRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNE 1045

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTD+TV+++S+ L   GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDD
Sbjct: 1046 GDATPFTDLTVESVSQFLRAQGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDD 1105

Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
            KIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLKERLFD SDAYR+H
Sbjct: 1106 KIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAGFLKERLFDASDAYRLH 1165

Query: 1125 VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            VC+ CGL AIANLKK SFECR CKNKT   Q+HIPYA KLLFQEL +M IA R+ T
Sbjct: 1166 VCDICGLTAIANLKKQSFECRACKNKTACSQIHIPYAAKLLFQELQSMNIAARLYT 1221


>gi|63054498|ref|NP_593101.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe
            972h-]
 gi|19862286|sp|Q02061.2|RPB2_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 138 kDa
            polypeptide
 gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|159883907|emb|CAB86470.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]
          Length = 1210

 Score = 1587 bits (4110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 761/1209 (62%), Positives = 940/1209 (77%), Gaps = 47/1209 (3%)

Query: 15   EEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 74
            E+    E +TQED W VIS++FEE  L RQQL SFDEF+QNTMQEIVD+ + + +   +Q
Sbjct: 4    EDYQYNETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQ 63

Query: 75   HNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 134
            H  G Q D     Y+I+FGQIYLS+P MTE+DG T T+FP+ ARLRNLTYS+PLYVD+ K
Sbjct: 64   HT-GAQGDVTRR-YEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRK 121

Query: 135  RVIKKGHDGEEVTETQDF--------TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            +V+        + E +          +KVFIGK+PIMLRS++C L   S+ +L +L ECP
Sbjct: 122  KVMVAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECP 181

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            YDQGGYFIINGSEKV+IAQE+ + N V VFKK  P+  AYVAE+RS  E  +R  S+M +
Sbjct: 182  YDQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQI 241

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            ++++R +    +SGQ IRATLPYIR++IPI+IVFRALG V D+DILEHICYD  D QM+E
Sbjct: 242  KLMARNTE---NSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLE 298

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +++P +EEAFVIQ++ +ALDYIGKRG+T GVTR+KR++YA +ILQKE+LPH+ T +  ET
Sbjct: 299  MMKPCIEEAFVIQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFET 358

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+IHR+LLCAL RR  DDRDH+G KRLDLAGPLL  LFRMLFRK+TRDV  Y+
Sbjct: 359  RKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYM 418

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            QKCV+  ++ NL  A+K+  IT+GL+YSLATGNWG Q  +   R GVSQVLNR T+ASTL
Sbjct: 419  QKCVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTL 478

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM Y++VGS + 
Sbjct: 479  SHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSA 538

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PI+EFLEEWG E  E+ +P+  P ATK+FVNG W+G+HRDP  L +TLR LRRR+D++ E
Sbjct: 539  PIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAE 598

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQRES----- 653
            V +VRDIR KELR++TD GR  RPLFIV+          L I+K  I  L + +      
Sbjct: 599  VSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDID 658

Query: 654  PEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----------VQARLHPEE---- 697
            PE   GW  LV+ G IEY+D EEEET MI+M+  DL           V+  L P +    
Sbjct: 659  PEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKP 718

Query: 698  ---AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
                +   +THCEIHP++ILG+ ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ RM
Sbjct: 719  APNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRM 778

Query: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
            DT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQ+SIDRG
Sbjct: 779  DTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRG 838

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
             FRS+F+R+Y D+EKK+G  V E+F RP RS T+ M+HG+YDKL+DDGL  PGTRVSGED
Sbjct: 839  LFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGED 898

Query: 875  VIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
            +IIGKT PI  D E  GQ ++ + +RD S  LR +E+G+VDQV++TTN +GL+FVKVR+R
Sbjct: 899  IIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMR 958

Query: 933  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
            S RIPQIGDKF+SRHGQKGT+GMTY  EDMP++ +GI PDII+NPHAIPSRMT+  L+EC
Sbjct: 959  STRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVEC 1018

Query: 993  IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1052
             + KV+A  G EGDATPFTDVTV+ +SK L   G+Q RGFE MY+GHTGR+L A +FLGP
Sbjct: 1019 QLSKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGP 1078

Query: 1053 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 1112
            TYYQRLKH+VDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERDC I+HG S  L+E
Sbjct: 1079 TYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRE 1138

Query: 1113 RLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1172
            RLFD SDAYRV VC+ CGLIAIA+ KK+S+ECR C+N+T   QV++PYA KLLFQELM+M
Sbjct: 1139 RLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSM 1198

Query: 1173 AIAPRMLTK 1181
             IAPR+ TK
Sbjct: 1199 NIAPRLFTK 1207


>gi|302698289|ref|XP_003038823.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
 gi|300112520|gb|EFJ03921.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
          Length = 1204

 Score = 1586 bits (4107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/1200 (62%), Positives = 932/1200 (77%), Gaps = 44/1200 (3%)

Query: 16   EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
            E++++  ITQED W VIS++F+EKGLVRQQLDSFDEFIQNTMQE+VDE+ ++ +    QH
Sbjct: 6    EDEDDNSITQEDCWTVISSFFDEKGLVRQQLDSFDEFIQNTMQELVDENPELILDQAEQH 65

Query: 76   NPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 135
              G   D ++  ++I FGQIYLS+P +TE+DG    +FP+ ARLRNLTY+APLY+++ ++
Sbjct: 66   T-GHNFDQSKR-FEIQFGQIYLSRPTITEADGSVVPVFPQEARLRNLTYAAPLYIEMRQK 123

Query: 136  VIKKGHDGEEVTET----------QDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
             +    + +E  E               KV IGKVPIMLRS++C L + S++++ +L EC
Sbjct: 124  TLHATDELDEAGEPIWRTVKEDEGNAVQKVHIGKVPIMLRSAFCILNKLSDQEIYDLNEC 183

Query: 186  PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
            PYD GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+   ++AE+RS  E   +  S   
Sbjct: 184  PYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQ 243

Query: 246  VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
            V+M  RT  +  S G  I+AT+PYI+ +IPI +VFRAL  ++D+DIL+HICY+  D QM+
Sbjct: 244  VKMFHRTKER--SMGNVIKATIPYIKVDIPIWVVFRALNVISDRDILDHICYESTDPQML 301

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            ELL+P +++ FVIQ ++VALD+IG RG T G+ R++R++YA+EILQKE+LPHV   +  E
Sbjct: 302  ELLKPCIDDGFVIQEREVALDFIGNRGTTTGLNRERRVRYAQEILQKELLPHVSMAEGSE 361

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            +KKAY+FGY++HRLLL AL RR  DDRDH+G KRLDLAGPLL GLFRMLFRK+T+DV  Y
Sbjct: 362  SKKAYFFGYMVHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRKMTKDVYRY 421

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +QKCV++ KD NL  AIK  TI+ GLKYSLATGNWG Q  A   +AGVSQVLNR TYAST
Sbjct: 422  LQKCVESNKDFNLNLAIKHHTISQGLKYSLATGNWGDQKKAGAAKAGVSQVLNRYTYAST 481

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS +
Sbjct: 482  LSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSIS 541

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             P+++FL+EW  E+ EE + +     TK+FVNG W+G+HRDP  LV+T+RRLRR+ D++ 
Sbjct: 542  APVIDFLQEWNLESLEENARSSEATFTKVFVNGVWMGVHRDPAKLVETIRRLRRKDDISQ 601

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVA 664
            EV VVRDIR KELR+YTD GR  RPLFIVE Q LL++K  + AL Q        W  LV 
Sbjct: 602  EVSVVRDIREKELRVYTDAGRVCRPLFIVENQSLLLEKHHVHALTQ-----GAKWDSLVK 656

Query: 665  KGFIEYIDTEEEETTMISMTINDLVQARLHPEE---------------------AYADTY 703
            +G IE +D EEEET MI+MT  DL  +R+ PEE                     A   T+
Sbjct: 657  QGIIELLDAEEEETVMIAMTPEDLENSRMTPEERAAQQAEEEVDMTATKVAHTMANTHTW 716

Query: 704  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN+  RMDT+A +LYY
Sbjct: 717  THCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFILRMDTMANILYY 776

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++R 
Sbjct: 777  PQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRG 836

Query: 824  YRDEEKK-MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
            Y D EKK +G +  E+F +P R NT+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT P
Sbjct: 837  YTDMEKKSVGMMPTEEFEKPSRDNTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAP 896

Query: 883  ISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 940
            I  D E  GQ ++ +TRRD S  L+ +E+G++DQVLLTTN DG + ++VRVRS RIPQIG
Sbjct: 897  IPPDSEELGQRTKNHTRRDVSTPLKSTESGIIDQVLLTTNEDGKKLIRVRVRSTRIPQIG 956

Query: 941  DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 1000
            DKF+SRHGQKGT+G+TY QEDMP+T +GI PDI++NPHAIPSRMTIG L+EC++ KVA  
Sbjct: 957  DKFASRHGQKGTIGITYRQEDMPFTAQGIVPDIVINPHAIPSRMTIGHLVECLLSKVATL 1016

Query: 1001 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            +G EGDATPFTD+TV+ +SK+L   G+Q RG E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 1017 IGNEGDATPFTDLTVEAVSKSLAAKGFQQRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 1076

Query: 1061 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDA 1120
            MVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLKERLFD SDA
Sbjct: 1077 MVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERLFDASDA 1136

Query: 1121 YRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            YR+HVC+ CGL AIANLKK SFECR CKNKT   Q++IPYA KLLFQEL AM IAPR+ T
Sbjct: 1137 YRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQELQAMNIAPRLYT 1196


>gi|241813048|ref|XP_002416483.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
 gi|215510947|gb|EEC20400.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
          Length = 1142

 Score = 1585 bits (4103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 773/1183 (65%), Positives = 920/1183 (77%), Gaps = 53/1183 (4%)

Query: 8    YEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YE +     EDE EEIT    QE  W VISAYF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YEPEEDAFREDESEEITPDLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   TPQIDLQAEAQHASGEIENPPR--YLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK VIK   +GEE  ETQ   K FIGK+PIMLRS+YC L   +++DL+EL 
Sbjct: 120  YSAPLYVDITKTVIK---EGEEPVETQ-HQKTFIGKIPIMLRSTYCLLNSLTDRDLSELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF+ +  +K+ + AE RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFQMKD-SKFVFKAECRSCLEHSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R     +  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF+D
Sbjct: 235  LWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RIKY++EILQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGARGAHPGVTKERRIKYSREILQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAYY GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPL+  LFR LFR LT++
Sbjct: 355  DFCETKKAYYLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRGLFRNLTKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRMYAQKFIDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            YASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  YASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMSYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P+ I +ATKIFVNGCWVGIHRDP+ L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRDPDQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV +VRDIR +E+RIYTD GR  RPL IVE Q+LL+K+R I +L++RE   +  W
Sbjct: 595  DIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEDQKLLLKRRHIDSLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M+SMT +DL         AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLSMTPDDLQDKGF----AYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDTLA+VLYYP KPL TTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGIYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAGIN+IVAI  Y+GYNQEDS+I+N S++DRGFFRS+F+RSY+D E K     +E F
Sbjct: 770  RELPAGINSIVAIMSYTGYNQEDSIIVNASAVDRGFFRSVFYRSYKDSECKRVGDQEEQF 829

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
             +P R    GMR+  YDKLDDDG+  PGTRVSG+DVIIGKT   P + D+ +    R+T+
Sbjct: 830  EKPTRETCQGMRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLESTNRRFTK 889

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR+SETG+VDQV+LT NA+G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+TY
Sbjct: 890  RDASTFLRNSETGIVDQVMLTVNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGITY 949

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1017
             QEDMP+T +G+TPDII+NPHAIPSRMT                                
Sbjct: 950  RQEDMPFTADGLTPDIIINPHAIPSRMT-------------------------------K 978

Query: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1077
            IS  L + GY +RG E MYNGHTGR++ A IFLGPTYYQRLKHMVDDKIHSR RGPVQIL
Sbjct: 979  ISNLLQEYGYHLRGNEVMYNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQIL 1038

Query: 1078 TRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANL 1137
             RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR H+C  CGL+AIANL
Sbjct: 1039 VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRAHICNLCGLLAIANL 1098

Query: 1138 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            + N+FEC+GC+NKT I Q+ +PYACKLLFQELM+M+IAPRM+ 
Sbjct: 1099 RNNTFECKGCRNKTQISQIRLPYACKLLFQELMSMSIAPRMMV 1141


>gi|218554|dbj|BAA02600.1| RNA polymerase II second largest subunit [Schizosaccharomyces pombe]
          Length = 1210

 Score = 1585 bits (4103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 761/1209 (62%), Positives = 939/1209 (77%), Gaps = 47/1209 (3%)

Query: 15   EEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 74
            E+    E +TQED W VIS++FEE  L RQQL SFDEF+QNTMQEIVD+ + + +   +Q
Sbjct: 4    EDYQYNETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQ 63

Query: 75   HNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 134
            H  G Q D     Y+I+FGQIYLS+P MTE+DG T T+FP+ ARLRNLTYS+PLYVD+ K
Sbjct: 64   HT-GAQGDVTRR-YEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRK 121

Query: 135  RVIKKGHDGEEVTETQDF--------TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            +V+        + E +          +KVFIGK+PIMLRS++C L   S+ +L +L ECP
Sbjct: 122  KVMVAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECP 181

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            YDQGGYFIINGSEKV+IAQE+ + N V VFKK  P+  AYVAE+RS  E  +R  S+M +
Sbjct: 182  YDQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQI 241

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            ++++R +    +SGQ IRATLPYIR++IPI+IVFRALG V D+DILEHICYD  D QM+E
Sbjct: 242  KLMARNTE---NSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLE 298

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +++P +EEAFVIQ++ +ALDYIGKRG+T GVTR+KR++YA +ILQKE+LPH+ T +  ET
Sbjct: 299  MMKPCIEEAFVIQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFET 358

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+IHR+LLCAL RR  DDRDH+G KRLDLAGPLL  LFRMLFRK+TRDV  Y+
Sbjct: 359  RKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYM 418

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            QKCV+  ++ NL  A+K+  IT+GL+YSLATGNWG Q  +   R GVSQVLNR T+ASTL
Sbjct: 419  QKCVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTL 478

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM Y++VGS + 
Sbjct: 479  SHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSA 538

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PI+EFLEEWG E  E+ +P+  P ATK+FVNG W+G+HRDP  L +TLR LRRR+D++ E
Sbjct: 539  PIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAE 598

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQRES----- 653
            V +VRDIR KELR++TD GR  RPLFIV+          L I+K  I  L + +      
Sbjct: 599  VSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDID 658

Query: 654  PEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----------VQARLHPEE---- 697
            PE   GW  LV+ G IEY+D EEEET MI+M+  DL           V+  L P +    
Sbjct: 659  PEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKP 718

Query: 698  ---AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
                +    THCEIHP++ILG+ ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ RM
Sbjct: 719  APNPHVHARTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRM 778

Query: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
            DT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQ+SIDRG
Sbjct: 779  DTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRG 838

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
             FRS+F+R+Y D+EKK+G  V E+F RP RS T+ M+HG+YDKL+DDGL  PGTRVSGED
Sbjct: 839  LFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGED 898

Query: 875  VIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
            +IIGKT PI  D E  GQ ++ + +RD S  LR +E+G+VDQV++TTN +GL+FVKVR+R
Sbjct: 899  IIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMR 958

Query: 933  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
            S RIPQIGDKF+SRHGQKGT+GMTY  EDMP++ +GI PDII+NPHAIPSRMT+  L+EC
Sbjct: 959  STRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVEC 1018

Query: 993  IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1052
             + KV+A  G EGDATPFTDVTV+ +SK L   G+Q RGFE MY+GHTGR+L A +FLGP
Sbjct: 1019 QLSKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGP 1078

Query: 1053 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 1112
            TYYQRLKH+VDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERDC I+HG S  L+E
Sbjct: 1079 TYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRE 1138

Query: 1113 RLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1172
            RLFD SDAYRV VC+ CGLIAIA+ KK+S+ECR C+N+T   QV++PYA KLLFQELM+M
Sbjct: 1139 RLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSM 1198

Query: 1173 AIAPRMLTK 1181
             IAPR+ TK
Sbjct: 1199 NIAPRLFTK 1207


>gi|47208444|emb|CAF93098.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1217

 Score = 1584 bits (4102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 780/1225 (63%), Positives = 932/1225 (76%), Gaps = 89/1225 (7%)

Query: 33   SAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISF 92
            S+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++ E+QH  G+  +     Y + F
Sbjct: 4    SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPR--YLLKF 61

Query: 93   GQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDF 152
             QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK +IK   +GE+  +TQ  
Sbjct: 62   EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIK---EGEDQIQTQH- 117

Query: 153  TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH 212
             K FIGK+PIMLRS+YC L   +++DL EL ECP D GGYFIINGSEKVLIAQEKM+TN 
Sbjct: 118  QKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNT 177

Query: 213  VYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLPYI 270
            VYVF K+  +KYAY +E RS  E+ +RP ST++V M++R     K  + GQ I +TLPYI
Sbjct: 178  VYVFAKKD-SKYAYTSECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYI 236

Query: 271  RTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGK 330
            R E+PIIIVFRALGFV+D+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG 
Sbjct: 237  RQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGS 296

Query: 331  RGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 390
            RGA  GVT+++RIKYAKE+LQKEMLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  D
Sbjct: 297  RGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELD 356

Query: 391  DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSG 450
            DRDHYGNKRLDLAGPLL  LFR +F+ L +++R Y QK +D GKD NL+ AIK + I+ G
Sbjct: 357  DRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDG 416

Query: 451  LKYSLATGNWGQANAA-GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 509
            LKYSLATGNWG    A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN
Sbjct: 417  LKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHN 476

Query: 510  SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ 569
            + WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN EEISPA I  
Sbjct: 477  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 536

Query: 570  ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSR 628
            ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV ++RDIR +E+RIYTD GR  R
Sbjct: 537  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 596

Query: 629  PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            PL IVEKQ+LL+K+R I  L++RE   +  W DLVA G +EYIDT EEET M++MT +DL
Sbjct: 597  PLLIVEKQKLLLKRRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDL 655

Query: 689  VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
             +  +    AY  TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+T
Sbjct: 656  QEKGV----AYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 711

Query: 749  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
            N+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+
Sbjct: 712  NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 771

Query: 809  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
            S++DRGFFRS+F+RSY+++E K G   +E F +P R    GMRH  Y+KLDDDGL  PG 
Sbjct: 772  SAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYEKLDDDGLIAPGV 831

Query: 869  RVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
            RVSGEDVIIGKT   P ++DE  G   RYT+RD S  LR SETG+VDQV++T N +G +F
Sbjct: 832  RVSGEDVIIGKTVTLPENEDELDGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKF 891

Query: 927  VKVR------------------------------VRSVRIPQIGDKFSSRHGQKGTVGMT 956
             K+R                              VRSVRIPQIGDKF+SRHGQKGT G+ 
Sbjct: 892  CKIRVSRRHLHLTRLRSSPGFKPSRMLSHSCSLQVRSVRIPQIGDKFASRHGQKGTCGIQ 951

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK-------------------- 996
            Y QEDMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GK                    
Sbjct: 952  YRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVWTSTSTLHLPELHCSVPLI 1011

Query: 997  --------------------VAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETM 1035
                                V+A+ G+ GDATPF D V V  +S  L + GY +RG E +
Sbjct: 1012 LVAANTGWAVLYQLFPVSFQVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVL 1071

Query: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1095
            YNG TGR+LT+ IF+GPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGRSRDGGLRFGE
Sbjct: 1072 YNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGE 1131

Query: 1096 MERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQ 1155
            MERDC IAHGA+ FLKERLF+ SD Y+VHVC  CGL+AIAN + +++ECRGC+NKT I  
Sbjct: 1132 MERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISL 1191

Query: 1156 VHIPYACKLLFQELMAMAIAPRMLT 1180
            V +PYACKLLFQELM+M+IAPRM+T
Sbjct: 1192 VRMPYACKLLFQELMSMSIAPRMMT 1216


>gi|328777078|ref|XP_003249277.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2 [Apis mellifera]
          Length = 1154

 Score = 1583 bits (4099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 770/1181 (65%), Positives = 923/1181 (78%), Gaps = 42/1181 (3%)

Query: 10   EQHQQEEEDEEE---EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            E+ Q ++ED EE   ++ QE  W VI+AYF+EKGLVRQQLDSFDEFI+ ++Q IV++S  
Sbjct: 5    EEDQYDDEDAEEISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQ 64

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            I+++ E+QH  G+  +    + K  F QIYLSKP   E DG  + + P  ARLRNLTYSA
Sbjct: 65   IDLQAEAQHTSGEIENPVRHLLK--FEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSA 122

Query: 127  PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            PLYVD+TK ++K   DGE+  ETQ   K FIGK+PIMLRS YC L   S++DLTEL ECP
Sbjct: 123  PLYVDITKTIVK---DGEDPIETQ-HQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECP 178

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
             D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY +E+RS  E  +RP ST+++
Sbjct: 179  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKSEIRSCLEHSSRPTSTLWI 237

Query: 247  RMLSRTSA--KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM 304
             M++++ A  K  + GQ I A +PYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +M
Sbjct: 238  NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            ME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFC
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGIRDFC 357

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ETKKAY+  +I                     NKRLDLAGPLL   FR LF+ L ++VR 
Sbjct: 358  ETKKAYFLEFI---------------------NKRLDLAGPLLAFXFRGLFKNLMKEVRL 396

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGVSQVLNRLT+AS
Sbjct: 397  YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 456

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS 
Sbjct: 457  TLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQ 516

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV- 602
              PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ TLR+LRR++D+ 
Sbjct: 517  PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDII 576

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDL 662
             +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R+   DG W +L
Sbjct: 577  VSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDG-WQEL 635

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
            V  G +EYIDT EEET MI+M+  DL Q +   E AY  TYTHCEIHP++ILGVCASIIP
Sbjct: 636  VGSGVVEYIDTLEEETVMIAMSPEDLRQEK---EYAYCTTYTHCEIHPAMILGVCASIIP 692

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTTR+ME+L FR+L
Sbjct: 693  FPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFREL 752

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K     +E F +P
Sbjct: 753  PAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKP 812

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDH 900
             R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE      R+T+RD 
Sbjct: 813  TRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDELDSTTKRFTKRDA 872

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QE
Sbjct: 873  STFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 932

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNIS 1019
            DMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  IS
Sbjct: 933  DMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKIS 992

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
              L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL R
Sbjct: 993  TLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVR 1052

Query: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK 1139
            QP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  CGLIAIANL+ 
Sbjct: 1053 QPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRN 1112

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++ 
Sbjct: 1113 NTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMV 1153


>gi|388582011|gb|EIM22317.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Wallemia sebi CBS 633.66]
          Length = 1198

 Score = 1582 bits (4097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 750/1194 (62%), Positives = 930/1194 (77%), Gaps = 42/1194 (3%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            I QED W VIS++F+EKGLVRQQ+DSFDEF+QNTMQEIV+E+  + +   +Q+   Q  +
Sbjct: 2    INQEDCWTVISSFFDEKGLVRQQIDSFDEFVQNTMQEIVEENQKLTLDQFNQYT--QHKN 59

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                 Y+I FGQIYLS+P MTE+DG  + +FP  ARLRNLTYSAP+Y+D+ KRV+ +  D
Sbjct: 60   DTTRRYEIQFGQIYLSRPTMTEADGSVSPMFPHEARLRNLTYSAPIYIDMKKRVLVQVED 119

Query: 143  GE--------EVTETQD-FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF 193
             E        E  E  D  TKV+IGKVPIML+S++C L       L+EL ECP+DQGGYF
Sbjct: 120  DETGDLIWVPEFDEEHDETTKVWIGKVPIMLKSTFCNLNNVDSARLSELNECPFDQGGYF 179

Query: 194  IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS 253
            IINGSEKVLIAQE+++ NHVY+F K +P+  +Y AE+RS  E   +  S+M ++M  R  
Sbjct: 180  IINGSEKVLIAQERLAANHVYIFAKAEPSPVSYQAEIRSAMEKGGKTVSSMQIKMFRR-- 237

Query: 254  AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLE 313
             +G +    +RAT+PYI+ EIPIIIVFRALG V D++ILEHIC+DF D+QM++LL+P +E
Sbjct: 238  PQGNAQADTMRATIPYIKNEIPIIIVFRALGIVPDREILEHICFDFDDSQMLDLLKPCIE 297

Query: 314  EAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 373
            EAFV+Q+Q VALD+IG+RG T G+++DKRI+YAK+ILQKEMLPHV T +  ETKKAY+FG
Sbjct: 298  EAFVVQDQNVALDFIGRRGTTTGLSKDKRIRYAKDILQKEMLPHVATNEGSETKKAYFFG 357

Query: 374  YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG 433
            Y+IHRL+L  L RR  DDRDH+G KRLDL GPLL  LFRMLFRKLT+DV  Y+QKCV+  
Sbjct: 358  YMIHRLMLARLERRELDDRDHFGKKRLDLGGPLLASLFRMLFRKLTKDVYRYMQKCVETH 417

Query: 434  KDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
            K+ NL  A+KA TIT+GLKYSLATGNWG Q      RAGVSQVLNR T+ASTLSHLRR N
Sbjct: 418  KEFNLNQAVKANTITNGLKYSLATGNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRCN 477

Query: 493  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
            +PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  ++ GS++ PI +FL+
Sbjct: 478  TPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMANVSTGSSSAPIQDFLQ 537

Query: 553  EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
            EWG E  EE +P       K+FVNG W+G+HRDP  LVKTLR+LRR  D+  EV VVRD+
Sbjct: 538  EWGMEELEEFNPR--SNQVKVFVNGVWIGVHRDPTNLVKTLRKLRREGDIQHEVSVVRDV 595

Query: 613  RLKELRIYTDYGRCSRPLFIV--EKQRLLIKKRDIIALQQRESPEDG------GWHDLVA 664
            R KE++++TD GR  RPLF+V  E Q+L I K  I  ++   + ED        W  L++
Sbjct: 596  REKEIKVFTDAGRVCRPLFLVDEETQQLEINKSHIAKIEAHTNGEDEDPDQPYNWAKLMS 655

Query: 665  KGFIEYIDTEEEETTMISMTINDLVQAR--LHPEEAYAD--------------TYTHCEI 708
             G +E +D EEEET MI MT  +L  +R    P++   D              T+THCEI
Sbjct: 656  DGVMELLDAEEEETVMICMTPEELEHSRQGFIPQDEEFDPAARIKSASTLDTHTWTHCEI 715

Query: 709  HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 768
            HPS+ILG+CASIIPFPDHNQSPRNTYQ+AMGKQAMG+++TN+Q RMDTL+ +LYYPQKPL
Sbjct: 716  HPSMILGICASIIPFPDHNQSPRNTYQAAMGKQAMGVHLTNFQQRMDTLSNILYYPQKPL 775

Query: 769  VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE 828
             TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS+IDRG FRS+F+RSY D E
Sbjct: 776  ATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSIFYRSYMDTE 835

Query: 829  KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-E 887
            KK+GT++ E+F +P R   + M+HG+YDK+++DGL  PGT V+G+D+IIGKT PI  D E
Sbjct: 836  KKVGTMLLEEFEKPTRETCLRMKHGTYDKIENDGLIAPGTAVTGDDIIIGKTAPIPPDSE 895

Query: 888  AQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 946
              GQ ++ +T+RD S  L+ +E G+VDQVL+TTNADGL+F KVR+RS RIPQIGDKF+SR
Sbjct: 896  ELGQRTKLHTKRDVSTPLKSTENGIVDQVLVTTNADGLKFSKVRMRSTRIPQIGDKFASR 955

Query: 947  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
            HGQKGT+G+TY  EDMP+T +GITPD+I+NPHAIPSRMTIG L+EC++ KVA   G EGD
Sbjct: 956  HGQKGTIGITYRNEDMPFTSDGITPDLIINPHAIPSRMTIGHLVECLLSKVATLQGSEGD 1015

Query: 1007 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            ATPFT+VTV++IS  LH+ GYQ RG E MYNGHTGR+L A +++GPTYYQRLKHMVDDKI
Sbjct: 1016 ATPFTEVTVESISSILHEKGYQKRGLEVMYNGHTGRKLQAQVYIGPTYYQRLKHMVDDKI 1075

Query: 1067 HSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVC 1126
            H+R RGPVQILTRQP EGRSRDGGLRFGEMERDCMIAHG + FLKERLFD SDAYR+HVC
Sbjct: 1076 HARARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIAHGVAAFLKERLFDASDAYRLHVC 1135

Query: 1127 EHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            + CG+ AIANLKK +FECR C+NKTDI Q+H+PYA KLLFQEL +M I+PR+ +
Sbjct: 1136 DLCGMTAIANLKKQTFECRACRNKTDISQIHVPYAAKLLFQELQSMGISPRLYS 1189


>gi|307208700|gb|EFN85990.1| DNA-directed RNA polymerase II subunit RPB2 [Harpegnathos saltator]
          Length = 1123

 Score = 1581 bits (4094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 758/1132 (66%), Positives = 906/1132 (80%), Gaps = 18/1132 (1%)

Query: 56   TMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPK 115
            ++Q IV++S  I+++ E+QH  G+  +    + K  F QIYLSKP   E DG  + + P 
Sbjct: 2    SVQRIVEDSPQIDLQAEAQHTTGEIENPVRHLLK--FEQIYLSKPTHWEKDGAPSPMMPN 59

Query: 116  AARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 175
             ARLRNLTYSAPLYVD+TK ++K   DGEE  ETQ   K FIGK+PIMLRS YC L   S
Sbjct: 60   EARLRNLTYSAPLYVDITKTIMK---DGEEPIETQ-HQKTFIGKIPIMLRSKYCLLAGLS 115

Query: 176  EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE 235
            ++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYAY AE+RS  E
Sbjct: 116  DRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAYKAEIRSCLE 174

Query: 236  SQNRPPSTMFVRMLSRTSA--KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293
              +RP ST+++ M++++ A  K  + GQ I A +PY++ EIPI++VFRALGFVAD+DILE
Sbjct: 175  HSSRPTSTLWINMMAKSGASIKKSAIGQRIVAIIPYVKQEIPIMVVFRALGFVADRDILE 234

Query: 294  HICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKE 353
            HI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYA+EILQKE
Sbjct: 235  HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGTRGARAGVTKEKRIKYAREILQKE 294

Query: 354  MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413
            MLPHVG  DFCETKKAY+ GY++HRLL  +LGRR  DDRDHYGNKRLDLAGPLL  LFR 
Sbjct: 295  MLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRA 354

Query: 414  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 472
            LF+ L ++VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q  A   RAGV
Sbjct: 355  LFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 414

Query: 473  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 532
            SQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL
Sbjct: 415  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNL 474

Query: 533  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 592
            ALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDP+ L+ T
Sbjct: 475  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMAT 534

Query: 593  LRRLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 651
            LR+LRR++D + +EV ++RDIR +E+RIYTD GR SRPL IVE Q LL+KKR I  L++R
Sbjct: 535  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKER 594

Query: 652  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 711
            +   D GW +LV  G +EYIDT EEET MI+M+ +DL Q +   E AY  TYTHCEIHP+
Sbjct: 595  DYNND-GWQELVGSGVVEYIDTLEEETVMIAMSPDDLRQEK---EYAYCTTYTHCEIHPA 650

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            +ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLVTT
Sbjct: 651  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTT 710

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY++ E K 
Sbjct: 711  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKEAESKK 770

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQ 889
                +E F +P R    GMR+  YDKLDDDG+  PG RVSG+DVIIGKT   P + DE  
Sbjct: 771  IGDQEEQFEKPSRLTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELD 830

Query: 890  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
                R+T+RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 831  STTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 890

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGT G+ Y QEDMP++ EG+TPDII+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATP
Sbjct: 891  KGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATP 950

Query: 1010 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            F D V V  IS  L + GYQ+RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHS
Sbjct: 951  FNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 1010

Query: 1069 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 1128
            R RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YR+H+C  
Sbjct: 1011 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNF 1070

Query: 1129 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CGLIAIANL+ N+FEC+GCKNKT I Q+ +PYA KLLFQELMAM IAPR++T
Sbjct: 1071 CGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRLMT 1122


>gi|302832249|ref|XP_002947689.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
            nagariensis]
 gi|300267037|gb|EFJ51222.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
            nagariensis]
          Length = 1206

 Score = 1579 bits (4088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 764/1208 (63%), Positives = 927/1208 (76%), Gaps = 32/1208 (2%)

Query: 1    MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            M   D D+ E  Q++E D+E  I QED+W VI+A+F++KGLVRQQLDSF+EF+  T+QEI
Sbjct: 1    MYGADEDHMEVAQEDEGDDE--IVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEI 58

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            +DE+ +I I+PESQH PG ++   E  Y I FGQ+YLS+P +TE DGE+  LFPK ARLR
Sbjct: 59   IDETPEIVIKPESQHLPGVEA-HEEKEYIIKFGQVYLSRPQITEQDGESVVLFPKEARLR 117

Query: 121  NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN-SEKDL 179
            NLTY APLYVDVTK    +  D     + +  + V +GKVPIML+S  C L++  +E++ 
Sbjct: 118  NLTYCAPLYVDVTKTEYTRQADDTVEEKQETLSHVHLGKVPIMLKSERCNLHEAATEQEA 177

Query: 180  TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNR 239
            T LGECPYDQGGYF+INGSEKVLIAQE+M+ NHVYVFKK QP+KY + AE+RS+ E   R
Sbjct: 178  TNLGECPYDQGGYFVINGSEKVLIAQERMANNHVYVFKKSQPSKYTFCAEIRSVVEGSTR 237

Query: 240  PPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 299
              S+M + ML++       +   IRA +PYIR E PI I+FRALGFV+D+DILEHI YD 
Sbjct: 238  SASSMSIMMLAKGKKA--GAAGVIRAQIPYIRAEFPIFILFRALGFVSDRDILEHIVYDL 295

Query: 300  -QDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHV 358
              D  M+E LR S+EEA  +Q Q+ AL+Y+GKRG   G ++  RI+YA+ +L KE+LPH+
Sbjct: 296  DSDPAMLEALRASVEEAQEVQTQEEALNYLGKRGTVTGASKADRIQYARNLLIKELLPHL 355

Query: 359  GTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 418
            GT +F ET+K Y+ GY++HRL+L ALGRR EDDRDHY NKRLDL GPL+ GLFR+LFRKL
Sbjct: 356  GTEEFMETRKGYFVGYMVHRLMLVALGRRPEDDRDHYANKRLDLGGPLMAGLFRLLFRKL 415

Query: 419  TRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNR 478
             +++R + Q+ VD GK++N+  AI  K IT GLKYSLATGNWG+    G RAGVSQVL R
Sbjct: 416  CKELRMHAQRMVDAGKEINVLSAINEKIITRGLKYSLATGNWGEQGKQGIRAGVSQVLAR 475

Query: 479  LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
            LTYASTLSHLRR+NSPIGREGKLAKPRQLHNS WGM CPAETPEGQA GLVKN+ALM YI
Sbjct: 476  LTYASTLSHLRRVNSPIGREGKLAKPRQLHNSLWGMFCPAETPEGQAVGLVKNMALMCYI 535

Query: 539  TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRR 598
            TVG+ + P++  LEE+ TE  +E++PA I  ATK+F+NG W+GI RDP  L+K LR +RR
Sbjct: 536  TVGTPSLPVVAHLEEFNTEALDEVTPADIAAATKVFINGVWLGIQRDPTALIKNLRAMRR 595

Query: 599  RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL-QQRESPEDG 657
            +V  +TEV ++ D  LKELRI+TDYGR SRPL+IVE  RLL+ K  I  L       E+ 
Sbjct: 596  QVAFSTEVSIIYDGPLKELRIFTDYGRTSRPLYIVEDNRLLVTKNHIRRLISPLPDEEEY 655

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVC 717
             W  LV  G +EYID EEEETTMI+MTI DL  AR     A   TYTHCEIHP++ILGVC
Sbjct: 656  AWPQLVQDGLVEYIDAEEEETTMIAMTIADLRNAR-EAGSATGTTYTHCEIHPAMILGVC 714

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TNYQ RMDT  +VLYYPQKPLV TRAM++L
Sbjct: 715  ASIIPFPDHNQSPRNTYQSAMGKQAMGMYATNYQTRMDTQGFVLYYPQKPLVCTRAMDYL 774

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
             FR+LPAGINAIVAI CYSGYNQEDS+++N SSIDRGF RS+F+R+Y++EEKK G+L +E
Sbjct: 775  KFRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRGFHRSIFYRAYKEEEKKAGSLSRE 834

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTR 897
            +   PD   T  M+HG+YDKLD DGL PPGTRVSGED+I GKT  +  D+  G   R+T+
Sbjct: 835  EIEAPDPVVTAKMKHGTYDKLDADGLCPPGTRVSGEDIICGKTVTLP-DDPTGAVQRFTK 893

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            +D S++LR  E G++DQV+LTTN +G +FVK+RVR++ IPQ+GDKF+SRHGQKGT G+TY
Sbjct: 894  KDASLALRGHEAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITY 953

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1017
            T EDMP++ EGI PDIIVNPHAIPSRMTIG L+E +M KVAA MG EGDATPFT VTVDN
Sbjct: 954  TMEDMPFSAEGIVPDIIVNPHAIPSRMTIGHLVEALMSKVAALMGSEGDATPFTKVTVDN 1013

Query: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1077
            +S+ LH  GYQ RG+E MYNGHTGR+L A IFL PTYYQRLKHMVD KIHSRGRGPVQ+L
Sbjct: 1014 VSQMLHDLGYQRRGWEVMYNGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVL 1073

Query: 1078 TRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANL 1137
            TRQPAEGR+RDGGLRFGEMERDC+I+HGA+ FLKERLFDQSDAYRVHVCE  GLIA+ANL
Sbjct: 1074 TRQPAEGRARDGGLRFGEMERDCIISHGAAAFLKERLFDQSDAYRVHVCERSGLIAVANL 1133

Query: 1138 KKNSFECRGCKNKTDIVQ----------------------VHIPYACKLLFQELMAMAIA 1175
            KK  F     K+ ++I Q                      V++PYACKLLFQELMAM IA
Sbjct: 1134 KKQQFTSTIYKDGSNIYQASYRRNPRWAAGGGYKRMWNKDVYVPYACKLLFQELMAMCIA 1193

Query: 1176 PRMLTKED 1183
            PRM  + D
Sbjct: 1194 PRMQFERD 1201


>gi|73975081|ref|XP_861044.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 17
            [Canis lupus familiaris]
 gi|410957579|ref|XP_003985403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Felis catus]
          Length = 1099

 Score = 1575 bits (4077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 760/1106 (68%), Positives = 895/1106 (80%), Gaps = 17/1106 (1%)

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            D  +  Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK VIK   
Sbjct: 3    DCNQPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 59

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D GGYFIINGSEKV
Sbjct: 60   EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV 118

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+R    AK  + 
Sbjct: 119  LIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAI 177

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ
Sbjct: 178  GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 237

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 238  EQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRL 297

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK +D GKD NL+
Sbjct: 298  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLE 357

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+
Sbjct: 358  LAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRD 417

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 418  GKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 477

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 478  LEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 537

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G +EYIDT EEE
Sbjct: 538  RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEE 596

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 597  TVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSA 652

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+G
Sbjct: 653  MGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTG 712

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R    GMRH  YDK
Sbjct: 713  YNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDK 772

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDGL  PG RVSG+DVIIGKT   P ++DE +G   RYT+RD S  LR SETG+VDQV
Sbjct: 773  LDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQV 832

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            ++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+
Sbjct: 833  MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 892

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L   GY +RG E 
Sbjct: 893  NPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEV 952

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFG
Sbjct: 953  LYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFG 1012

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++ECRGC+NKT I 
Sbjct: 1013 EMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1072

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
             V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1073 LVRMPYACKLLFQELMSMSIAPRMMS 1098


>gi|297673507|ref|XP_002814802.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 3
            [Pongo abelii]
 gi|395851371|ref|XP_003798234.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Otolemur garnettii]
 gi|410038419|ref|XP_003950401.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
            troglodytes]
          Length = 1099

 Score = 1573 bits (4074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 759/1106 (68%), Positives = 894/1106 (80%), Gaps = 17/1106 (1%)

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            D  +  Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK VIK   
Sbjct: 3    DCNQPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 59

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D GGYFIINGSEKV
Sbjct: 60   EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV 118

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+R    AK  + 
Sbjct: 119  LIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAI 177

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ
Sbjct: 178  GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 237

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 238  EQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRL 297

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK +D GKD NL+
Sbjct: 298  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLE 357

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+
Sbjct: 358  LAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRD 417

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 418  GKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 477

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 478  LEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 537

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G +EYIDT EEE
Sbjct: 538  RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEE 596

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 597  TVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSA 652

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+G
Sbjct: 653  MGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTG 712

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R    GMRH  YDK
Sbjct: 713  YNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDK 772

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+RD S  LR SETG+VDQV
Sbjct: 773  LDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQV 832

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            ++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+
Sbjct: 833  MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 892

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L   GY +RG E 
Sbjct: 893  NPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEV 952

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFG
Sbjct: 953  LYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFG 1012

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++ECRGC+NKT I 
Sbjct: 1013 EMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1072

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
             V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1073 LVRMPYACKLLFQELMSMSIAPRMMS 1098


>gi|196009726|ref|XP_002114728.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
 gi|190582790|gb|EDV22862.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
          Length = 1196

 Score = 1573 bits (4072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 760/1188 (63%), Positives = 929/1188 (78%), Gaps = 34/1188 (2%)

Query: 2    MEDDYDYEEQHQQEEEDE-EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            M+D   Y+   Q  ++DE E ++ QE  W VI+AYF EKGLVRQQLDSFDEFIQ ++Q I
Sbjct: 1    MDDVDSYDLTDQPIDDDEIETDLWQEACWVVINAYFNEKGLVRQQLDSFDEFIQMSVQRI 60

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            V++S  I+I+ E+QH+  ++       Y++ F QIYLSKP   E DG    +    ARLR
Sbjct: 61   VEDSPQIDIQGETQHHSSEEQQSVR--YQLKFDQIYLSKPTFWEKDGSPTPMMSNQARLR 118

Query: 121  NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 180
            NLTYSAPLYVD+TK + K    G    E +   K FIGK+PIMLRS+YC L+  ++  LT
Sbjct: 119  NLTYSAPLYVDITKTITK----GNNEPEVKCHPKTFIGKIPIMLRSTYCLLHNMADHALT 174

Query: 181  ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240
            EL ECP D GGYFIINGSEKVLIAQEKM++N VYVF+K++ +KYAYVAE+RS+ E+ +RP
Sbjct: 175  ELNECPLDVGGYFIINGSEKVLIAQEKMASNTVYVFQKKE-SKYAYVAEIRSVTENSSRP 233

Query: 241  PSTMFVRMLSRT--SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYD 298
             ST++V ML+R   ++K    GQ I A +PY+  EIPI++VFRALGFVAD+DILEHI YD
Sbjct: 234  TSTLWVSMLARGGGTSKKSVIGQKIVAAIPYVNQEIPIMVVFRALGFVADRDILEHIIYD 293

Query: 299  FQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHV 358
            F D ++ME+++PSL+EAFVIQ Q VAL+YIG RG+  GVT++KRIKYA+EILQKEMLPHV
Sbjct: 294  FDDPELMEMVKPSLDEAFVIQEQNVALNYIGSRGSRSGVTKEKRIKYAREILQKEMLPHV 353

Query: 359  GTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 418
            G  D+CETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRL              FR L
Sbjct: 354  GISDYCETKKAYFLGYMVHRLLLTALGRREVDDRDHYGNKRL--------------FRNL 399

Query: 419  TRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLN 477
             ++V+ Y QK VDNG+D NL+ AIK K IT GL+YSLATGNWG Q  A  +RAGVSQVLN
Sbjct: 400  LKEVKMYAQKFVDNGRDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQSRAGVSQVLN 459

Query: 478  RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 537
            RLT+ STLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEGQA GLVKNLALM Y
Sbjct: 460  RLTFVSTLSHLRRLNSPIGRDGKLARPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAY 519

Query: 538  ITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLR 597
            I+VGS   PILEFLEEW  EN EE+S + +  ATKIFVNGCWVGIHRDPE L+ TLR+LR
Sbjct: 520  ISVGSQPSPILEFLEEWSMENLEEVSHSALASATKIFVNGCWVGIHRDPEQLMSTLRKLR 579

Query: 598  RRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 656
            R++DV  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L++KK  I +++  +  E 
Sbjct: 580  RQMDVIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLVLKKNHIESMKTADDYEV 639

Query: 657  GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
             GW DL+A G +EY+DT EEET MI+MT  D + A ++    Y  TYTHCEIHPS+ILGV
Sbjct: 640  FGWQDLIANGIVEYVDTLEEETVMIAMT-PDYLTAGVN----YCRTYTHCEIHPSMILGV 694

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTTR+ME+
Sbjct: 695  CASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEY 754

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAGIN IVAIA Y+GYNQEDS+IMN+ +IDRG FRS+F+RSYRD+E       +
Sbjct: 755  LRFRELPAGINTIVAIASYTGYNQEDSIIMNRGAIDRGLFRSVFYRSYRDQESSGDFNSE 814

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS-R 894
            E F +P +    GM +  YDKLDDDGL  PGTRVSG D++IGKT  + +D +A G  + R
Sbjct: 815  EIFEKPSKETCSGMHNAMYDKLDDDGLVAPGTRVSGGDIVIGKTALLPEDADALGDTNKR 874

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            + +RD S  LR SE+G+VDQVLLT + +G +F KVRVRSVRIPQIGDKF+SRHGQKGT G
Sbjct: 875  FVKRDASTGLRSSESGIVDQVLLTVSQEGYKFTKVRVRSVRIPQIGDKFASRHGQKGTCG 934

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-V 1013
            +TY QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D +
Sbjct: 935  ITYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDTL 994

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TV  IS  L   GY +RG E +YNG TGR+L   +FLGPTYYQRLKHMVDDKIH+R RGP
Sbjct: 995  TVQKISSLLSDYGYHLRGNEVLYNGFTGRKLNTQVFLGPTYYQRLKHMVDDKIHARARGP 1054

Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
            +Q LTRQP +GR+RDGGLRFGEMERDC I+HGA+ FL+ERL+D SD Y VH+C  CGL+A
Sbjct: 1055 LQNLTRQPMQGRARDGGLRFGEMERDCQISHGAAQFLRERLYDASDPYIVHMCNLCGLVA 1114

Query: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            +ANL+ +++EC+GC+NKT I QV IPYACKLLFQELM+M++APR++++
Sbjct: 1115 VANLRNDTYECKGCRNKTRISQVRIPYACKLLFQELMSMSLAPRIMSR 1162


>gi|194378878|dbj|BAG57990.1| unnamed protein product [Homo sapiens]
          Length = 1099

 Score = 1571 bits (4067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 758/1106 (68%), Positives = 893/1106 (80%), Gaps = 17/1106 (1%)

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
            D  +  Y + F QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK VIK   
Sbjct: 3    DCNQPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK--- 59

Query: 142  DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
            +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL ECP D GGYFIINGSEKV
Sbjct: 60   EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV 118

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+R    AK  + 
Sbjct: 119  LIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAI 177

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+EAFVIQ
Sbjct: 178  GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 237

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 238  EQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRL 297

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK +D GKD NL+
Sbjct: 298  LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLE 357

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+
Sbjct: 358  LAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRD 417

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 418  GKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 477

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV ++RDIR +E+
Sbjct: 478  LEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 537

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G +EYIDT EEE
Sbjct: 538  RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEE 596

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 597  TVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSA 652

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+G
Sbjct: 653  MGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTG 712

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMN+S++DR FFRS+F+RSY+++E K G   +E F +P R    GMRH  YDK
Sbjct: 713  YNQEDSVIMNRSAVDRSFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDK 772

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+RD S  LR SETG+VDQV
Sbjct: 773  LDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQV 832

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            ++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+
Sbjct: 833  MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 892

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L   GY +RG E 
Sbjct: 893  NPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEV 952

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFG
Sbjct: 953  LYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFG 1012

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIV 1154
            EMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++ECRGC+NKT I 
Sbjct: 1013 EMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQIS 1072

Query: 1155 QVHIPYACKLLFQELMAMAIAPRMLT 1180
             V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1073 LVRMPYACKLLFQELMSMSIAPRMMS 1098


>gi|268574492|ref|XP_002642223.1| C. briggsae CBR-RPB-2 protein [Caenorhabditis briggsae]
          Length = 1194

 Score = 1571 bits (4067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 758/1190 (63%), Positives = 914/1190 (76%), Gaps = 25/1190 (2%)

Query: 3    EDDYDYEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQ 58
            EDD   ++ + +E  DE  EI+    QE  W VISAYF+EKGLVRQQLDSFDEF+Q  +Q
Sbjct: 5    EDDGMQDDGNDEEYSDETAEISPDAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQ 64

Query: 59   EIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 118
             IV++S  +E++ E+QH      + A+  + + F QIYLSKP   E DG    + P  AR
Sbjct: 65   RIVEDSPPVELQSENQHLGNDMENPAK--FSLKFNQIYLSKPTHWEKDGAPMPMMPNEAR 122

Query: 119  LRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKD 178
            LRNLTY++PLYVD+TK V +     E+V E     KVF+GKVP+MLRSSYC L   +++D
Sbjct: 123  LRNLTYASPLYVDITKVVTRDESVNEKVYE-----KVFVGKVPVMLRSSYCMLSNMTDRD 177

Query: 179  LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQN 238
            LTEL ECP D GGYF+INGSEKVLIAQEKM+TN VYVF  +   KYA+  E RS  E+ +
Sbjct: 178  LTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKTECRSCLENSS 236

Query: 239  RPPSTMFVRMLSRTSAKGGSS--GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC 296
            RP STM+V ML+R    G  +  GQ I   LPYI+ EIPI+IVFRALGFV+D+DIL HI 
Sbjct: 237  RPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHII 296

Query: 297  YDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLP 356
            YDF+D +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVTR++RIKYA+EILQKE+LP
Sbjct: 297  YDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREILQKELLP 356

Query: 357  HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR 416
            HVG  + CETKKA++ GY++HRLLL ALGRR  DDRDH GNKRLDLAGPLL  LFR LFR
Sbjct: 357  HVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRALFR 416

Query: 417  KLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQV 475
             L +++R   QK ++   D  L   +K  TIT GL YSLATGNWG Q  A  +RAGVSQV
Sbjct: 417  NLLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLAYSLATGNWGDQKKAHQSRAGVSQV 476

Query: 476  LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 535
            LNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM
Sbjct: 477  LNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALM 536

Query: 536  VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR 595
             YI+VGS   PILEFLEEW  EN EE+SP+ I  ATKIFVNG WVGIHR+PE+L+ TL++
Sbjct: 537  AYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWVGIHREPELLMDTLKK 596

Query: 596  LRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESP 654
            LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IVEKQ+L ++KR I  L+  +  
Sbjct: 597  LRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVEKQKLALRKRHIDLLKDVDET 656

Query: 655  EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLIL 714
            +   W DLV  G +E ID+ EEET+MI+M   DL          Y DTYTHCEIHP++IL
Sbjct: 657  KKYTWSDLVGNGVVELIDSMEEETSMIAMMPEDLRSG------GYCDTYTHCEIHPAMIL 710

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            GVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTTR+M
Sbjct: 711  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSM 770

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E+L F +LPAGINAIVAI  YSGYNQEDSVIMN S+IDRG FRS+F+RSYRD E  +   
Sbjct: 771  EYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANIDNA 830

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQA 892
             +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   P   D+     
Sbjct: 831  NEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDATG 890

Query: 893  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
             +Y +RD S  LR SETG+VDQV+L+ N DG +FVK+R+RSVR+PQIGDKF+SRHGQKGT
Sbjct: 891  KKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRHGQKGT 950

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            +G+ Y QEDMP+T EG+TPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATPF D
Sbjct: 951  MGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFND 1010

Query: 1013 -VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
             V V  IS  L + GY +RG E MYNGHTG++LT  IF GPTYYQRLKHMVDDKIHSR R
Sbjct: 1011 TVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRAR 1070

Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
            GP+Q++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V+VC +CGL
Sbjct: 1071 GPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGL 1130

Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            I +ANL+ NSFEC+ C+NKT +  V IPYACKLLFQELM+M+IAPR++ K
Sbjct: 1131 IVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVK 1180


>gi|224003383|ref|XP_002291363.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
            pseudonana CCMP1335]
 gi|220973139|gb|EED91470.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
            pseudonana CCMP1335]
          Length = 1196

 Score = 1569 bits (4063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 757/1198 (63%), Positives = 918/1198 (76%), Gaps = 44/1198 (3%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG-QQS 81
            +TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQE+VD+S  I + PE QH  G  ++
Sbjct: 8    VTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHLVGYDEA 67

Query: 82   DFAET-------IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 134
            +F ET       ++++ FGQ+YLSKP   E DG    +FP  ARLRNLTY+APLYVDVT 
Sbjct: 68   NFDETMNSTTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYVDVTM 127

Query: 135  RVIKKGHD----------GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 184
               + G+D          GE V+ T++  K F+G VPIMLRS +C L    +  L +LGE
Sbjct: 128  NEYRVGNDVNVGDPAEDMGEPVS-TEEARKEFLGYVPIMLRSLFCVLSDKDDAQLADLGE 186

Query: 185  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTM 244
            C YDQGGYF+INGSEKV++AQE+MS NHVY FKK+QP+K+++V E RS  E+  RP ST+
Sbjct: 187  CIYDQGGYFVINGSEKVIVAQERMSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPTSTL 246

Query: 245  FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM 304
            +++M  +   KG   G  IR+TLPYIRT+IP++I+FRALG+VAD+DI+EH+ YD  D +M
Sbjct: 247  YIQMYQK-GGKGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEM 305

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            M+L RPSLEEAFVIQ Q+VALD+IG+RG+   VT+D RI+YA  ILQKE+LPHVGT + C
Sbjct: 306  MDLFRPSLEEAFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQKEVLPHVGTEEHC 365

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ETKK ++ GY +H+LL+C LGR  EDDRDH+G KRLDLAGPLLGGLFR+LFRKLT+DVR 
Sbjct: 366  ETKKGFFLGYAVHKLLMCKLGRADEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRK 425

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST 484
            ++Q+C+D GK  N+  AIK+  I+ GLKYSLATGNWG      ++AGVSQVLNRLTYAS+
Sbjct: 426  HLQRCLDEGKHFNIGAAIKSNHISDGLKYSLATGNWGDKGNT-SKAGVSQVLNRLTYASS 484

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+P+ R GK AKPRQLHNS WGM+CPAETPEGQA GLVKN+ALM YIT G++ 
Sbjct: 485  LSHLRRSNTPLARTGKQAKPRQLHNSHWGMVCPAETPEGQAVGLVKNMALMAYITTGTSQ 544

Query: 545  YPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV 602
             P++EFLEE+ TEN  +I P+VI  P   KIFVNG WVGIHRDP+ LV T R LRR +D+
Sbjct: 545  VPVMEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKQLVHTFRSLRRMIDI 604

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GWH 660
            + EV +VRDI   E+RIYTD GR  RPLFIV  Q L IKK  I  LQ   SP+     W 
Sbjct: 605  DAEVSIVRDIPESEVRIYTDAGRICRPLFIVTDQELAIKKHHISQLQG-VSPDQKKLTWT 663

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASI 720
            DL+ +G +EY+DTEEEETTMI+M   DL    +   E Y+ TYTHCEIHPS+ILG+CASI
Sbjct: 664  DLLMEGLVEYVDTEEEETTMIAMEPKDL---DMTVGEPYSTTYTHCEIHPSMILGICASI 720

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMGIY +NYQ RMDT+A+VL+YPQKPL TTRAME LHFR
Sbjct: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFR 780

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK-----MGTLV 835
            +LP+G+N +VAI  Y+GYNQEDS+IMNQS+IDRG FRS ++R Y D+EK      +G L 
Sbjct: 781  ELPSGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYNDQEKSSSVGSVGALN 840

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRY 895
             E F RP   N  GM+ G Y KLDDDGL  PGTRVSG+DV+IGKT P+  D      SRY
Sbjct: 841  SEFFERPAFDNCKGMKTGDYGKLDDDGLVSPGTRVSGDDVLIGKTAPM--DAIANTPSRY 898

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
            T+RD S S++ +E G+VD VL++T  +G RF KVR+R+VRIPQ+GDKF+SRHGQKGT+GM
Sbjct: 899  TKRDCSTSMKANENGIVDNVLISTTKEGYRFTKVRIRNVRIPQVGDKFASRHGQKGTIGM 958

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1015
            TY QEDMP+T EGI PDIIVNPHAIPSRMTI QLIECI+GKVA   G EGDATPFTDV V
Sbjct: 959  TYRQEDMPFTCEGIVPDIIVNPHAIPSRMTIAQLIECILGKVAVFQGCEGDATPFTDVHV 1018

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1075
            D+ISK LH  GYQ  G E MY GHTGR L A +F+GPT+YQRLKH+VDDK+HSR RGPV 
Sbjct: 1019 DDISKRLHAMGYQRHGNEAMYQGHTGRPLNARVFIGPTFYQRLKHLVDDKVHSRARGPVA 1078

Query: 1076 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIA 1135
            +LTRQP EGR+RDGGLR GEMERDC+I HG ++F+++R F  SD YR+H+CE CGL A +
Sbjct: 1079 MLTRQPLEGRARDGGLRMGEMERDCLITHGCANFIRDRFFCNSDQYRIHICERCGLTAQS 1138

Query: 1136 NLKKNSFECR-----GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK-EDTKQS 1187
            NLKK ++ECR     G   K  I QV IPYACKLLFQEL +M I+PR+ T+  DT+ +
Sbjct: 1139 NLKKMTYECRTPTCVGLPYK--ICQVEIPYACKLLFQELQSMCISPRIYTEVRDTRDN 1194


>gi|256073421|ref|XP_002573029.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
          Length = 1304

 Score = 1568 bits (4061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 766/1190 (64%), Positives = 927/1190 (77%), Gaps = 26/1190 (2%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTM 57
             E+D    + +  E+ +E++EIT    QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++
Sbjct: 122  FEEDDPERQFYGDEQSNEDDEITPDMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSI 181

Query: 58   QEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAA 117
            Q+IV++S  IE++ E+QH+ G      +  Y++ F QIYLSK    E DG +  + P  A
Sbjct: 182  QKIVEDSPIIELQAEAQHSGGILETPVQ--YRLKFEQIYLSKATHWEKDGSSVPMTPNDA 239

Query: 118  RLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEK 177
            RLRNLTY+APLYVDV K++I+     +E+ E +   K FIGK+PIMLRS+YC L   S++
Sbjct: 240  RLRNLTYAAPLYVDVMKKIIR-----DEIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDR 294

Query: 178  DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQ 237
            DL EL ECP D GGYFIINGSEKVLIAQEKM+TN VYVFK++  +KYAY  E+RS  E  
Sbjct: 295  DLAELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFKQKD-SKYAYKTEIRSCLEHS 353

Query: 238  NRPPSTMFVRMLSRTSAKG---GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 294
            +RP ST+++ M++R    G    + GQ I A LPYI+ EIP++IVFRALGFVAD+DILEH
Sbjct: 354  SRPASTLWINMMARGGKDGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEH 413

Query: 295  ICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEM 354
            I YDF DT+M E+++PSL++AFVIQ Q+VAL++IG RGA  GVT++KRIKYAKEILQKE 
Sbjct: 414  IIYDFDDTEMREMIKPSLDDAFVIQEQKVALNFIGSRGARPGVTKEKRIKYAKEILQKET 473

Query: 355  LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 414
            LPHVG  DFCET+KAY+ GY++HRLLL AL RR  DDRDHYGNKRLDLAGPLL  LFR L
Sbjct: 474  LPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGL 533

Query: 415  FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 473
            FR LT+++R Y QK +D GKD NL+ AI+++ IT GLKYSLATGNWG Q  A   R GVS
Sbjct: 534  FRNLTKEIRLYAQKFIDKGKDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVS 593

Query: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
            QVLNRLT+ASTLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEG A GLVKNLA
Sbjct: 594  QVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLA 653

Query: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593
            LM YI+VGS   PILEFLEEW  EN EEI+P+ I +  KIFVNGCWVGIH  P+ L+ TL
Sbjct: 654  LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHSSPDHLMGTL 713

Query: 594  RRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 652
            R+LRR+VDV  +EV ++RD R +E+RIYTD GR  RPL IVEK +LL+ KR  I L + +
Sbjct: 714  RKLRRQVDVIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEKGKLLL-KRSHIELLKDK 772

Query: 653  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 712
            +     W DLV  G +EYIDT EEET MI+M       A +     Y  T+THCEIHPS+
Sbjct: 773  AYNRYSWQDLVLSGVVEYIDTLEEETVMIAMG-----PAEMQAAVNYCKTHTHCEIHPSM 827

Query: 713  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 772
            ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y++N+  RMDTLA VLYYPQKPLV TR
Sbjct: 828  ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATR 887

Query: 773  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 832
            +ME+L FR+LPAGINAIVAIA Y+GYNQEDSVI+N+S+I RGFFRS F+R+Y+D+E + G
Sbjct: 888  SMEYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQETRHG 947

Query: 833  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQG 890
              ++E F +P+  N  GMRH  YDKLDDDGL  PGTRVSG+DV+IGKT   P ++DE +G
Sbjct: 948  MDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEMEG 1007

Query: 891  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
               RYT+RD S+ +R SE G+VDQV++T N +G +F KVRVR+ + PQ+GDKF+SRHGQK
Sbjct: 1008 GQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDKFASRHGQK 1067

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF
Sbjct: 1068 GTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPF 1127

Query: 1011 TD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 1069
             D V V  IS  L + GYQ  G E MYNG TGR+L + IFLGPTYYQRLKHMVDDKIHSR
Sbjct: 1128 NDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSR 1187

Query: 1070 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 1129
             RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF  SD Y+V+VC  C
Sbjct: 1188 SRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLC 1247

Query: 1130 GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            GLIAIA+ +  ++ECR CKN T I  V +PYACKLLFQELM+M+IAPRM+
Sbjct: 1248 GLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRMM 1297


>gi|226480014|emb|CAX73303.1| putative DNA-directed RNA polymerase II 140 kDa polypeptide (RNA
            polymerase II subunit 2) (RPB2) [Schistosoma japonicum]
          Length = 1196

 Score = 1566 bits (4055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 765/1190 (64%), Positives = 927/1190 (77%), Gaps = 26/1190 (2%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTM 57
             E+D    + +  E+ +E++EIT    QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++
Sbjct: 14   FEEDDPERQFYGDEQMNEDDEITPDMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSI 73

Query: 58   QEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAA 117
            Q+IV++S  IE++ E+QH+ G   +  +  Y++ F QIYLSK    E DG +  + P  A
Sbjct: 74   QKIVEDSPIIELQAEAQHSGGILENPVQ--YRLKFEQIYLSKATHWEKDGSSVPMTPNDA 131

Query: 118  RLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEK 177
            RLRNLTY+APLYVDV K++I+     +E  E +   K FIGK+PIMLRS+YC L   S++
Sbjct: 132  RLRNLTYAAPLYVDVMKKIIR-----DETEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDR 186

Query: 178  DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQ 237
            DL EL ECP D GGYFIINGSEKVLIAQEKM+TN VYVFK++  +KYAY  E+RS  E  
Sbjct: 187  DLAELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFKQKD-SKYAYKTEIRSCLEHS 245

Query: 238  NRPPSTMFVRMLSRTSAKG---GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 294
            +RP ST+++ M++R    G    + GQ I A LPYI+ EIP++IVFRALGFVAD+DILEH
Sbjct: 246  SRPASTLWINMMARGGKDGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEH 305

Query: 295  ICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEM 354
            I YDF DT+M E+++PSL++AFVIQ Q+VAL++IG RGA  GVT++KRIKYAKEILQKE 
Sbjct: 306  IIYDFDDTEMREMIKPSLDDAFVIQEQKVALNFIGSRGARPGVTKEKRIKYAKEILQKET 365

Query: 355  LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 414
            LPHVG  DFCET+KAY+ GY++HRLLL AL RR  DDRDHYGNKRLDLAGPLL  LFR L
Sbjct: 366  LPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGL 425

Query: 415  FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 473
            FR LT+++R Y QK +D GKD NL+ AI+++ IT GLKYSLATGNWG Q  A   R GVS
Sbjct: 426  FRNLTKEIRLYAQKFIDKGKDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVS 485

Query: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
            QVLNRLT+ASTLSHLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEG A GLVKNLA
Sbjct: 486  QVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLA 545

Query: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593
            LM YI+VGS   PILEFLEEW  EN EEI+P+ I +  KIFVNGCWVGIH  P+ L+ TL
Sbjct: 546  LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHSSPDHLMGTL 605

Query: 594  RRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 652
            R+LRR+VDV  +EV ++RD R +E+RIYTD GR  RPL IVEK +LL+ KR  I L + +
Sbjct: 606  RKLRRQVDVIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEKGKLLL-KRSHIELLKDK 664

Query: 653  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 712
            +     W DLV  G +EYIDT EEET MI+M       A +     Y  T+THCEIHPS+
Sbjct: 665  AYNRYSWQDLVLSGVVEYIDTLEEETVMIAMG-----PAEMQAAVNYCKTHTHCEIHPSM 719

Query: 713  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 772
            ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y++N+  RMDTLA VLYYPQKPLV TR
Sbjct: 720  ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATR 779

Query: 773  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 832
            +ME+L FR+LPAGINAIVAIA Y+GYNQEDSVI+N+S+I RGFFRS F+R+Y+D+E + G
Sbjct: 780  SMEYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQETRHG 839

Query: 833  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQG 890
              ++E F +P+  N  GMRH  YDKLDDDGL  PGTRVSG+DV+IGKT   P ++DE +G
Sbjct: 840  MDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEMEG 899

Query: 891  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
               RYT+RD S+ +R SE G+VDQV++T N +G +F KVRVR+ + PQ+GDKF+SRHGQK
Sbjct: 900  GQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDKFASRHGQK 959

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF
Sbjct: 960  GTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPF 1019

Query: 1011 TD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 1069
             D V V  IS  L + GYQ  G E MYNG TGR+L + IFLGPTYYQRLKHMVDDKIHS+
Sbjct: 1020 NDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSQ 1079

Query: 1070 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 1129
             RGPVQIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF  SD Y+V+VC  C
Sbjct: 1080 SRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLC 1139

Query: 1130 GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            GLIAIA+ +  ++ECR CKN T I  V +PYACKLLFQELM+M+IAPRM+
Sbjct: 1140 GLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRMM 1189


>gi|312079478|ref|XP_003142191.1| DNA-directed RNA polymerase II second largest subunit [Loa loa]
 gi|307762647|gb|EFO21881.1| DNA-directed RNA polymerase II subunit RPB2 [Loa loa]
          Length = 1171

 Score = 1566 bits (4054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 757/1164 (65%), Positives = 898/1164 (77%), Gaps = 26/1164 (2%)

Query: 25   QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFA 84
            QE  W VISAYF+EKGLVRQQLDSFDEFIQ  +Q IV++S  +E++ E QH  G   D  
Sbjct: 25   QEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSG---DVE 81

Query: 85   ETI-YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDG 143
              I + + F QIYLSKP   E DG    + P  ARLRNLTYS+PLY+D+TK + + G   
Sbjct: 82   NPIKFALKFDQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSSPLYIDITKTMTRIG--- 138

Query: 144  EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLI 203
            EE  ET+ + KVF+GK+PIMLRSSYC L   S++DL+EL ECP D GGYF+INGSEKVLI
Sbjct: 139  EEPKETK-YEKVFVGKIPIMLRSSYCMLANMSDRDLSELNECPLDPGGYFVINGSEKVLI 197

Query: 204  AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS--AKGGSSGQ 261
            AQEKM+TN VYVF  +   KY Y  E RS  E+ +RP ST++V ML R    +K  + G 
Sbjct: 198  AQEKMATNTVYVFSMKD-GKYTYKTECRSCLENSSRPTSTLWVNMLPRGGGGSKKSAMGP 256

Query: 262  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 321
             I A LPYI+ EIP++IVFRALGFV+D DILEHI YDF+D +MME+++PSL+EAFVIQ Q
Sbjct: 257  KIIAILPYIKQEIPVMIVFRALGFVSDHDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQ 316

Query: 322  QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 381
             VAL++IG RGA  GVT+++RIKYAKEILQKEMLPHVG  DFCETKKAY+ GY++HRLLL
Sbjct: 317  NVALNFIGARGAKPGVTKEQRIKYAKEILQKEMLPHVGISDFCETKKAYFLGYMVHRLLL 376

Query: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 441
             ALGRR  DDRDH GNKRLDLAGPLL  LFR LFR L ++VR   QK ++   D  L   
Sbjct: 377  AALGRRELDDRDHMGNKRLDLAGPLLAFLFRALFRNLLKEVRLTAQKYINKNGDFMLDLC 436

Query: 442  IKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 500
            +K   IT GL YSLATGNWG Q  A  +RAGVSQVLNRLTY +TLSHLRR NSPIGREGK
Sbjct: 437  VKTPLITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRCNSPIGREGK 496

Query: 501  LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
            LAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI+VGS   PILEFLEEW  EN E
Sbjct: 497  LAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLE 556

Query: 561  EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV-NTEVGVVRDIRLKELRI 619
            E++P  I  ATKIFVNG WVGIHRDPE L+ TL++LRR +D+  +EV +VRDIR +E+RI
Sbjct: 557  EVAPTAIADATKIFVNGAWVGIHRDPEQLMTTLKKLRREMDIIVSEVSMVRDIRDREIRI 616

Query: 620  YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 679
            YTD GR  RPL IVE Q+L +K++ I  L+         W +LVA G +E ID  EEET 
Sbjct: 617  YTDAGRVCRPLLIVENQKLALKRKHIDQLKDNSYT----WSELVAGGVVELIDAMEEETV 672

Query: 680  MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
            M++M   DL          Y DTYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 673  MLAMMPEDLKAG------GYCDTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMG 726

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMG+Y TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F +LPAGINAIVAI  Y+GYN
Sbjct: 727  KQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYTGYN 786

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDS+IMNQS IDRG FRS+F+RSYRD+E  +    +E   +P R    GMRH  YDKLD
Sbjct: 787  QEDSIIMNQSGIDRGLFRSVFYRSYRDQEANLDNANEELIEKPTRDKCSGMRHSLYDKLD 846

Query: 860  DDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLL 917
            +DG+  PG RVSG+DVIIGKT   P ++D+      RYT++D S  LR SETG+VDQV+L
Sbjct: 847  EDGIISPGMRVSGDDVIIGKTISLPDTEDDLDATIKRYTKKDASTFLRSSETGIVDQVML 906

Query: 918  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
            T N DG +FVK+RVRSVR+PQIGDKF+SRHGQKGT+GM Y QEDMP+T EGITPDII+NP
Sbjct: 907  TLNTDGNKFVKIRVRSVRLPQIGDKFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINP 966

Query: 978  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMY 1036
            HA+PSRMTIG LIEC+ GK++A+ G+ GDATPF D V V  IS  L + GY +RG E MY
Sbjct: 967  HAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISNLLQEYGYHLRGNEIMY 1026

Query: 1037 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1096
            NGHTGR+LT  +FLGPTYYQRLKHMVDDKIHSR RGPVQ++ RQP EGR+RDGGLRFGEM
Sbjct: 1027 NGHTGRKLTIQVFLGPTYYQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEM 1086

Query: 1097 ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQV 1156
            ERDC I+HGA+ FL+ERLF+ SD Y V++C +CGLI +ANL+ NSFEC+ C+NKT +   
Sbjct: 1087 ERDCQISHGAAQFLRERLFEVSDPYHVYICNNCGLIVVANLRTNSFECKACRNKTQVSAF 1146

Query: 1157 HIPYACKLLFQELMAMAIAPRMLT 1180
             IPYACKLLFQELM+M+IAPR++ 
Sbjct: 1147 RIPYACKLLFQELMSMSIAPRLMV 1170


>gi|360044299|emb|CCD81846.1| putative dna-directed rna polymerase II subunit [Schistosoma mansoni]
          Length = 1158

 Score = 1563 bits (4046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 759/1163 (65%), Positives = 913/1163 (78%), Gaps = 22/1163 (1%)

Query: 25   QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFA 84
            QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q+IV++S  IE++ E+QH+ G      
Sbjct: 3    QEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIELQAEAQHSGGILETPV 62

Query: 85   ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 144
            +  Y++ F QIYLSK    E DG +  + P  ARLRNLTY+APLYVDV K++I+     +
Sbjct: 63   Q--YRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVDVMKKIIR-----D 115

Query: 145  EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 204
            E+ E +   K FIGK+PIMLRS+YC L   S++DL EL ECP D GGYFIINGSEKVLIA
Sbjct: 116  EIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYFIINGSEKVLIA 175

Query: 205  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKG---GSSGQ 261
            QEKM+TN VYVFK++  +KYAY  E+RS  E  +RP ST+++ M++R    G    + GQ
Sbjct: 176  QEKMATNTVYVFKQKD-SKYAYKTEIRSCLEHSSRPASTLWINMMARGGKDGSKRATIGQ 234

Query: 262  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 321
             I A LPYI+ EIP++IVFRALGFVAD+DILEHI YDF DT+M E+++PSL++AFVIQ Q
Sbjct: 235  RIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPSLDDAFVIQEQ 294

Query: 322  QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 381
            +VAL++IG RGA  GVT++KRIKYAKEILQKE LPHVG  DFCET+KAY+ GY++HRLLL
Sbjct: 295  KVALNFIGSRGARPGVTKEKRIKYAKEILQKETLPHVGVSDFCETRKAYFLGYMVHRLLL 354

Query: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 441
             AL RR  DDRDHYGNKRLDLAGPLL  LFR LFR LT+++R Y QK +D GKD NL+ A
Sbjct: 355  AALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLELA 414

Query: 442  IKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 500
            I+++ IT GLKYSLATGNWG Q  A   R GVSQVLNRLT+ASTLSHLRRLNSPIGR+GK
Sbjct: 415  IRSQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 474

Query: 501  LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
            LA+PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN E
Sbjct: 475  LARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 534

Query: 561  EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV-NTEVGVVRDIRLKELRI 619
            EI+P+ I +  KIFVNGCWVGIH  P+ L+ TLR+LRR+VDV  +EV ++RD R +E+RI
Sbjct: 535  EIAPSAIGKTCKIFVNGCWVGIHSSPDHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIRI 594

Query: 620  YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 679
            YTD GR  RPL IVEK +LL+ KR  I L + ++     W DLV  G +EYIDT EEET 
Sbjct: 595  YTDAGRICRPLVIVEKGKLLL-KRSHIELLKDKAYNRYSWQDLVLSGVVEYIDTLEEETV 653

Query: 680  MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
            MI+M       A +     Y  T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMG
Sbjct: 654  MIAMG-----PAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMG 708

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMG+Y++N+  RMDTLA VLYYPQKPLV TR+ME+L FR+LPAGINAIVAIA Y+GYN
Sbjct: 709  KQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYN 768

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDSVI+N+S+I RGFFRS F+R+Y+D+E + G  ++E F +P+  N  GMRH  YDKLD
Sbjct: 769  QEDSVIINESAIQRGFFRSEFYRTYKDQETRHGMDLEEVFEKPNPQNCQGMRHAIYDKLD 828

Query: 860  DDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLL 917
            DDGL  PGTRVSG+DV+IGKT   P ++DE +G   RYT+RD S+ +R SE G+VDQV++
Sbjct: 829  DDGLIAPGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMV 888

Query: 918  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
            T N +G +F KVRVR+ + PQ+GDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NP
Sbjct: 889  TWNNEGNKFCKVRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINP 948

Query: 978  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMY 1036
            HAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L + GYQ  G E MY
Sbjct: 949  HAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVRKISLLLQEYGYQHTGNEIMY 1008

Query: 1037 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1096
            NG TGR+L + IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGRSRDGGLRFGEM
Sbjct: 1009 NGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSRSRGPVQILNRQPMEGRSRDGGLRFGEM 1068

Query: 1097 ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQV 1156
            ERDC IAHGA+ FL+ERLF  SD Y+V+VC  CGLIAIA+ +  ++ECR CKN T I  V
Sbjct: 1069 ERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIAHQRNKTYECRSCKNTTQISLV 1128

Query: 1157 HIPYACKLLFQELMAMAIAPRML 1179
             +PYACKLLFQELM+M+IAPRM+
Sbjct: 1129 KLPYACKLLFQELMSMSIAPRMM 1151


>gi|339250694|ref|XP_003374332.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
 gi|316969378|gb|EFV53485.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
          Length = 1190

 Score = 1563 bits (4046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 756/1172 (64%), Positives = 902/1172 (76%), Gaps = 28/1172 (2%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            D   E+ QE  W VISAYF+EKGLVRQQLDSFDEFIQ ++Q++V++S  +EI+ E     
Sbjct: 38   DISSEMWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMSVQKLVEDSPPVEIQLEDHGAQ 97

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
            G     +ET + I F QIYLSKP   E DG  A L P  ARLRNLTYSAPLYVD+TK + 
Sbjct: 98   G----LSETKFSIKFEQIYLSKPTHWEKDGAPAPLMPNEARLRNLTYSAPLYVDITKTIA 153

Query: 138  KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 197
            K      E      + KVFIGK+PIMLRS+YC L + SE+DLT+L ECP D GGYFIING
Sbjct: 154  KSN----EEPLIAKYEKVFIGKIPIMLRSTYCLLNRLSERDLTDLNECPLDPGGYFIING 209

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQEKM+TN VYVF  +  NK+A+ AE RS  ES +RP ST++V M +R    G 
Sbjct: 210  SEKVLIAQEKMATNTVYVFSLKD-NKFAFKAECRSCLESSSRPTSTLWVNMYARGGGHGA 268

Query: 258  SS------GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPS 311
            ++      GQ I   LPY++ E+P+I+VFRALGFV+D+DILEHI YDF D +MME+++PS
Sbjct: 269  ANTKKQLMGQRIVVNLPYVKQELPVIVVFRALGFVSDRDILEHIVYDFDDAEMMEMVKPS 328

Query: 312  LEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYY 371
            L+EAFVIQ Q VAL++IG RG   G+TR+KR+KYA+EILQKE LPHVG  DFCETKKAY+
Sbjct: 329  LDEAFVIQEQSVALNFIGSRGVQPGITREKRVKYAREILQKETLPHVGISDFCETKKAYF 388

Query: 372  FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 431
             GY++HRLLL A+GRR  DDRDHYGNKRLDLAGPL       LF+ L ++V+   Q+ ++
Sbjct: 389  LGYMVHRLLLAAMGRRELDDRDHYGNKRLDLAGPL------GLFKNLLKEVKMVAQRYIN 442

Query: 432  NGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRR 490
               D NL+  ++   +T GL+YSLATGNWG Q  A  TRAGVSQVLNRLTYA+TLSHLRR
Sbjct: 443  KTGDFNLELCVRTGILTKGLQYSLATGNWGDQKKAHQTRAGVSQVLNRLTYAATLSHLRR 502

Query: 491  LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 550
            LNSPIGREGKLAKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI+VGS   PILEF
Sbjct: 503  LNSPIGREGKLAKPRQLHNTLWGMICPAETPEGQAVGLVKNLALMAYISVGSQQEPILEF 562

Query: 551  LEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVV 609
            LEEW  E  EE++P+ I   TKIFVNG WVGIHR+P+ L+ TLR+LRR++D V +EV +V
Sbjct: 563  LEEWSMETLEEVAPSAISATTKIFVNGAWVGIHREPQQLMATLRKLRRQMDIVVSEVSMV 622

Query: 610  RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIE 669
            RDIR +E+RIYTD GR  RPL IVE QRLL+KK  I  L++R      GW +LVA   +E
Sbjct: 623  RDIRDREIRIYTDAGRICRPLLIVEDQRLLLKKNHIENLKRRNESNGHGWSELVANSIVE 682

Query: 670  YIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 729
            YIDT EEET M++MT +DL    +     Y DTYTHCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 683  YIDTMEEETIMLAMTPDDLQDRGV----GYCDTYTHCEIHPSMILGVCASIIPFPDHNQS 738

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGIY TN+  RMDTLA+VL+YPQKPLVTTR+ME+L F +LPAGIN+I
Sbjct: 739  PRNTYQSAMGKQAMGIYTTNFHVRMDTLAHVLWYPQKPLVTTRSMEYLRFNELPAGINSI 798

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI  Y+GYNQEDSVIMN SSIDRG FRS+F+RSYRD+E       +E   +P R    G
Sbjct: 799  VAILSYTGYNQEDSVIMNSSSIDRGMFRSIFYRSYRDQESSREARNEETIEKPTRQICQG 858

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSET 909
            MR+  Y KLDDDG+  PGTRVSG+DVIIGKT  +   +      R +++D S  LR SET
Sbjct: 859  MRNAVYHKLDDDGIVSPGTRVSGDDVIIGKTIMLEDTDDSSTTKRSSKKDASTFLRASET 918

Query: 910  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
            G+VDQV+L+ NADG +FVKVRVRS+RIPQIGDKF+SRHGQKGT+GM Y QEDMP+T EGI
Sbjct: 919  GIVDQVMLSVNADGNKFVKVRVRSIRIPQIGDKFASRHGQKGTIGMIYRQEDMPFTCEGI 978

Query: 970  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQ 1028
            TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  +S  L + GY 
Sbjct: 979  TPDIIINPHAIPSRMTIGHLIECLQGKVSANRGEIGDATPFNDSVNVQKVSSLLQEYGYH 1038

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
            +RG E MY+G TGR+L   +F+GPTYYQRLKHMVDDKIHSR RGP+Q++ RQP EGRSRD
Sbjct: 1039 LRGNEVMYSGFTGRKLNTQVFIGPTYYQRLKHMVDDKIHSRARGPLQMMARQPMEGRSRD 1098

Query: 1089 GGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK 1148
            GGLRFGEMERDC IAHGA+HFLKERLF+ SD Y V+VC+ CG+IAIAN +   +ECR C+
Sbjct: 1099 GGLRFGEMERDCQIAHGAAHFLKERLFEVSDPYTVYVCKICGIIAIANSRTGHYECRTCR 1158

Query: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            NKT I +V+IPYACKLLFQEL +M IAPRM T
Sbjct: 1159 NKTKISRVNIPYACKLLFQELTSMCIAPRMKT 1190


>gi|409051856|gb|EKM61332.1| hypothetical protein PHACADRAFT_247866 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1237

 Score = 1562 bits (4044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 752/1204 (62%), Positives = 927/1204 (76%), Gaps = 63/1204 (5%)

Query: 27   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAET 86
            D W +IS++F++KGLVRQQLDSFDEF+QNTMQE+VDE+AD+ +    QH  G ++D    
Sbjct: 39   DCWHIISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHT-GHEADVTRR 97

Query: 87   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 146
             Y+I FGQIYLS+P +TE+DG    +FP+ ARLRNLTYSAPLYV++ KR +    D +  
Sbjct: 98   -YEIKFGQIYLSRPTVTEADGSVVPIFPQEARLRNLTYSAPLYVEMKKRTLVGREDPDST 156

Query: 147  T-----------ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 195
            T             +D  KV+IGKVPIMLRS++C L + ++++L +L ECPYD GGYFII
Sbjct: 157  TGDLVWEQEHDESPEDTRKVWIGKVPIMLRSTFCILNKLTQEELFDLNECPYDSGGYFII 216

Query: 196  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAK 255
            NGSEKVLIAQE+M+TNHVYVF K QP+  +++AE+RS  E   +  S   V++  R   +
Sbjct: 217  NGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRNQER 276

Query: 256  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA 315
              S G  ++AT+PYI+ +IPI +VFRALG ++D+DILEHICYD QD QM+E+L+P +++ 
Sbjct: 277  --SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDG 334

Query: 316  FVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 375
            FVIQ++++ALD+IG RG T G+ R++R++YA+EILQKEMLPH+         KAY+FGY+
Sbjct: 335  FVIQDREIALDFIGNRGTTTGLNRERRLRYAQEILQKEMLPHI--------HKAYFFGYM 386

Query: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 435
            IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+
Sbjct: 387  IHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKE 446

Query: 436  VNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
             NL  A+K  TIT+GLKYSLATGNWG Q  +   +AGVSQVLNR TYASTLSHLRR N+P
Sbjct: 447  FNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNTP 506

Query: 495  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
            +GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEW
Sbjct: 507  LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEEW 566

Query: 555  GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
            G E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR 
Sbjct: 567  GLESLEENAHSTTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRE 625

Query: 615  KELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ----------RESPEDGG------ 658
            +ELR+YTD GR  RPLFIVE  +L ++K+ I  +            R   EDG       
Sbjct: 626  RELRLYTDAGRVCRPLFIVENNQLTLRKKHIEWIASGVPQYDDAGSRLLKEDGTYDNQPY 685

Query: 659  -WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEA------------ 698
             W +LV  G IE +D EEEET MI MT  DL  ARL       H +E+            
Sbjct: 686  EWSNLVKDGVIELLDAEEEETVMICMTPEDLENARLQQAGIDSHRDESEFDPSARLKNFS 745

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
             A  +THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A
Sbjct: 746  MAHLWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMA 805

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
             +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS
Sbjct: 806  NILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRS 865

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            +++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V+GED+IIG
Sbjct: 866  MYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIG 925

Query: 879  KTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 936
            KT PI  D E  GQ +R +T+RD S  L+ +E+G++DQVL+TTNA+G +FVK+RVRS RI
Sbjct: 926  KTAPIPPDSEELGQRTRTHTKRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRI 985

Query: 937  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 996
            PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI++NPHAIPSRMTIG L+EC++ K
Sbjct: 986  PQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSK 1045

Query: 997  VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            VA  +G EGDATPFTD+TV+++S+ L + GYQ RG E MY+GHTGR+L A ++ GPTYYQ
Sbjct: 1046 VATIVGNEGDATPFTDLTVESVSQILREQGYQSRGLEIMYHGHTGRKLQAQVYFGPTYYQ 1105

Query: 1057 RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFD 1116
            RLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLKERLF+
Sbjct: 1106 RLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERLFE 1165

Query: 1117 QSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAP 1176
             SDAYR+HVC+ CGL AIANLKK +FECR CKNKT   Q++IPYA KLLFQEL +M IA 
Sbjct: 1166 ASDAYRLHVCDICGLTAIANLKKQTFECRSCKNKTACSQLYIPYAAKLLFQELQSMNIAA 1225

Query: 1177 RMLT 1180
            R+ T
Sbjct: 1226 RLYT 1229


>gi|402219896|gb|EJT99968.1| DNA-dependent RNA polymerase II second largest subunit [Dacryopinax
            sp. DJM-731 SS1]
          Length = 1258

 Score = 1561 bits (4042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 744/1194 (62%), Positives = 933/1194 (78%), Gaps = 40/1194 (3%)

Query: 20   EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
            E  ++QED W +I+++FEEKGLVRQQLDSFDEF+QN+MQE+VDES ++ +   +QH+ G+
Sbjct: 54   EGPLSQEDCWQIITSFFEEKGLVRQQLDSFDEFVQNSMQEVVDESGELILDQANQHS-GR 112

Query: 80   QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK- 138
            + D  +  Y++SFGQIYLS+P   E DG    +FP+ ARLRNLTYSAPLY+DV KRV+  
Sbjct: 113  ELDETKR-YELSFGQIYLSRPSTMEPDGSNLPIFPQEARLRNLTYSAPLYIDVKKRVLSG 171

Query: 139  ----KGHDGEEVTETQD------FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
                +  +GE + E+Q+        K+++GKVP+MLRS++C L   S+ DL +L ECPYD
Sbjct: 172  RENPEDVNGEMIWESQNTDADKEIHKIWVGKVPVMLRSTFCILSGLSDGDLYDLNECPYD 231

Query: 189  QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
            QGGYFIINGSEKVLIAQE+M+ NHVYVF K QP+  +++AE+RS  E   +  S + ++M
Sbjct: 232  QGGYFIINGSEKVLIAQERMAANHVYVFAKAQPSPISHLAEIRSQVEKGGKQISLLQIKM 291

Query: 249  LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
              R   K  S+G  +RA LPYIR +IP+++VFRALG V D+D+LEHICYD +D  M+E+L
Sbjct: 292  THRNLEK--STGSLMRAQLPYIRNDIPVVVVFRALGIVPDRDVLEHICYDPEDHAMLEML 349

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            +P +EEAFVIQ+++VALDYIG+RG T G++RDKR++YA+EILQKEMLPH+ T +  E+KK
Sbjct: 350  KPCIEEAFVIQDREVALDYIGRRGTTTGLSRDKRLRYAQEILQKEMLPHISTQEGAESKK 409

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            AY+FGY++HRL+L AL RR  DDRDH+G KRLDLAGPLL  LFRMLFR+LT+DV  Y+QK
Sbjct: 410  AYFFGYMVHRLVLAALDRRELDDRDHFGKKRLDLAGPLLATLFRMLFRRLTKDVYRYMQK 469

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 487
            CV+  ++ N+  A+K  TIT+GLKYSLATGNWG Q      +AGVSQVLNR T+ASTLSH
Sbjct: 470  CVETHREFNINAAVKPATITNGLKYSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSH 529

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRR N+PIGR+GK+A+PRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P+
Sbjct: 530  LRRTNTPIGRDGKIARPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSQPV 589

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 607
            +EFLEEWG E   + +   I  ATK+FVNG W+GIHR+P+ LV+T+R LRR   +++E+ 
Sbjct: 590  VEFLEEWGLEPLGDQTNETI-TATKVFVNGVWMGIHRNPQHLVETVRTLRRSDGISSEIS 648

Query: 608  VVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQRESPEDG--GWHDLV 663
            VVRDIR +ELR+YTD GR  RPLFIV +  Q L+I K++I  LQ R   E    GW  LV
Sbjct: 649  VVRDIRERELRLYTDAGRVCRPLFIVNEGTQDLVIGKKEINCLQNRVDDEGQPYGWSQLV 708

Query: 664  AKGFIEYIDTEEEETTMISMTINDLVQARL---------HPEEA--------YADTYTHC 706
            + G +E +D EEEET MI+MT  DL  ++           P+ A        + + +THC
Sbjct: 709  SSGMVELLDAEEEETVMIAMTPEDLEASKTKRGTGYISNEPQNAAVRIKSIVHHEHWTHC 768

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            EIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+Q RMDT+A +LYYPQK
Sbjct: 769  EIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVRMDTMANILYYPQK 828

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
            PL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D
Sbjct: 829  PLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYTD 888

Query: 827  EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 886
             EK  G +  E+F +P R  T+ M+HG+Y+KL+ DGL  PG  ++GED+IIGKT P+  D
Sbjct: 889  MEKSTGVVPIEEFEKPHRDTTVRMKHGTYEKLEADGLVAPGIGINGEDIIIGKTAPLPPD 948

Query: 887  -EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
             E  GQ +R +TRRD S  L+ +E G+VDQVLL+TN +G++FVKVR+RS RIPQIGDKF+
Sbjct: 949  SEELGQRTRTHTRRDVSTPLKSTENGIVDQVLLSTNENGVKFVKVRIRSTRIPQIGDKFA 1008

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT+GMTY QEDMP+   GITPDI++NPHAIPSRMTIG L+EC++ K+A  +G E
Sbjct: 1009 SRHGQKGTIGMTYRQEDMPFAANGITPDIVINPHAIPSRMTIGHLVECLLSKLATLIGNE 1068

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTD+TV+++S  L   GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDD
Sbjct: 1069 GDATPFTDLTVESVSSLLRNKGYQQRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDD 1128

Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
            KIH+R RGPVQI+TRQP EGRSRDGGLRFGEMERDCMI+HG + FLKER+FDQSDA R+H
Sbjct: 1129 KIHARARGPVQIMTRQPVEGRSRDGGLRFGEMERDCMISHGVASFLKERMFDQSDAARLH 1188

Query: 1125 VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
            VC+ CGL +IANLKK +FECR CKNKT   Q +IPYA KLL QEL AM IAPRM
Sbjct: 1189 VCDICGLASIANLKKQTFECRACKNKTRSTQFYIPYAAKLLLQELQAMNIAPRM 1242


>gi|341896020|gb|EGT51955.1| CBN-RPB-2 protein [Caenorhabditis brenneri]
          Length = 1195

 Score = 1561 bits (4041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 758/1204 (62%), Positives = 913/1204 (75%), Gaps = 25/1204 (2%)

Query: 1    MMEDDYDYEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNT 56
            M EDD         E E+E +EI+    QE  W VISAYF+EKGLVRQQLDSFDEF+Q  
Sbjct: 1    MYEDDDMPHVPMDGEYEEETDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMN 60

Query: 57   MQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKA 116
            +Q IV++S  +E++ E+QH      + A+  + + F QIYLSKP   E DG    + P  
Sbjct: 61   VQRIVEDSPPVELQSENQHLGNDMENPAK--FSLKFNQIYLSKPTHWEKDGAPMPMMPNE 118

Query: 117  ARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 176
            ARLRNLTY++PLYVD+TK V +     E+V E     KVF+GKVP+MLRSSYC L   ++
Sbjct: 119  ARLRNLTYASPLYVDITKVVTRDDSVVEKVYE-----KVFVGKVPVMLRSSYCMLSNMTD 173

Query: 177  KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAES 236
            +DLTEL ECP D GGYF+INGSEKVLIAQEKM+TN VYVF  +   KYA+  E RS  E+
Sbjct: 174  RDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKTECRSCLEN 232

Query: 237  QNRPPSTMFVRMLSRTSAKGGSS--GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 294
             +RP STM+V ML+R    G  +  GQ I   LPYI+ EIPI+IVFRALGFV+D+DIL H
Sbjct: 233  SSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGH 292

Query: 295  ICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEM 354
            I YDF+D +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVTR++RIKYA+EILQKE+
Sbjct: 293  IIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREILQKEL 352

Query: 355  LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 414
            LPHVG  + CETKKA++ GY++HRLLL ALGRR  DDRDH GNKRLDLAGPLL  LFR L
Sbjct: 353  LPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRAL 412

Query: 415  FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 473
            FR L +++R   QK ++   D  L   +K  TIT GL YSLATGNWG Q  A  +RAGVS
Sbjct: 413  FRNLLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLAYSLATGNWGDQKKAHQSRAGVS 472

Query: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
            QVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLA
Sbjct: 473  QVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLA 532

Query: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593
            LM YI+VGS   PILEFLEEW  EN EE+SP+ I  ATKIFVNG WVGIHR+P+ L+ TL
Sbjct: 533  LMAYISVGSLPEPILEFLEEWSMENLEEVSPSSISDATKIFVNGSWVGIHREPDQLMTTL 592

Query: 594  RRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 652
            ++LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L +KK  I  L+  +
Sbjct: 593  KKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVEDQKLALKKTHIDQLKDVD 652

Query: 653  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 712
                  W DLV  G +E ID+ EEET+MI+M   DL          Y DT+THCEIHP++
Sbjct: 653  EANKFSWSDLVGGGVVELIDSMEEETSMIAMMPEDLRTG------GYCDTHTHCEIHPAM 706

Query: 713  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 772
            ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTTR
Sbjct: 707  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTR 766

Query: 773  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 832
            +ME+L F +LPAGINAIVAI  YSGYNQEDSVIMN S+IDRG FRS+F+RSYRD E  + 
Sbjct: 767  SMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLD 826

Query: 833  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQG 890
               +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   P   D+   
Sbjct: 827  NANEELIEKPTREKCSGMRHALYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDA 886

Query: 891  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
               +Y +RD S  LR SETG+VDQV+L+ N DG +FVK+R+RSVR+PQIGDKF+SRHGQK
Sbjct: 887  TGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRHGQK 946

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GT+G+ Y QEDMP+T EG+TPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATPF
Sbjct: 947  GTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPF 1006

Query: 1011 TD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 1069
             D V V  IS  L + GY +RG E MYNGHTG++LT  IF GPTYYQRLKHMVDDKIHSR
Sbjct: 1007 NDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSR 1066

Query: 1070 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 1129
             RGP+Q++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V+VC +C
Sbjct: 1067 ARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNC 1126

Query: 1130 GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKD 1189
            GLI +ANL+ NSFEC+ C+NKT +  V IPYACKLLFQELM+M+IAPR++ K  T +   
Sbjct: 1127 GLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVKPQTSKRPT 1186

Query: 1190 HKKK 1193
             + K
Sbjct: 1187 KQPK 1190


>gi|164660997|ref|XP_001731621.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
 gi|159105522|gb|EDP44407.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
          Length = 1197

 Score = 1560 bits (4040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 747/1201 (62%), Positives = 936/1201 (77%), Gaps = 45/1201 (3%)

Query: 16   EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
            E++  EEI+QED W VI A+FEEKGLVRQQ+DSF+EF+ NT+QE+V+ES  + +    QH
Sbjct: 3    EDEGVEEISQEDCWDVIKAFFEEKGLVRQQIDSFNEFMSNTVQELVEESKSLTLEQSDQH 62

Query: 76   NPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 135
              GQ  D     Y+I FGQIY++KP  TE+DG TA LFP+ AR RNLTYSA L+VDV+++
Sbjct: 63   T-GQAEDKTRR-YEIEFGQIYMNKPQQTEADGSTAPLFPQEARQRNLTYSAGLHVDVSQK 120

Query: 136  VIKKGHDGEEVTETQDFT-------------KVFIGKVPIMLRSSYCTLYQNSEKDLTEL 182
            V+ KG + +E+ E  D               KV++GKVPIML S +C L    ++    L
Sbjct: 121  VLVKGEE-DELDENGDQLWIPDPTQEEIVDEKVYLGKVPIMLHSHFCWLTDLPDEGKYSL 179

Query: 183  GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS 242
             ECP+D GGYFIINGSEKVLIAQE+M+ NHVYVF K  P+   ++AE+RS  E   +  S
Sbjct: 180  NECPFDSGGYFIINGSEKVLIAQERMAANHVYVFSKAPPSPITFLAEIRSAVERGGKTIS 239

Query: 243  TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDT 302
            TM V++ SR   K  S    I+ATLPYIR +IPI+IVFRALG V D+D+L+HICYDF DT
Sbjct: 240  TMQVKLFSRNREK--SLNNTIKATLPYIRNDIPIVIVFRALGVVPDRDVLQHICYDFNDT 297

Query: 303  QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
            QM+E+L+P +EEAFVIQ+++VALD+IG+RG T G++R KR  YA+EILQKEMLPH+   +
Sbjct: 298  QMLEMLKPCIEEAFVIQDREVALDFIGRRGTTTGLSRFKRTAYAQEILQKEMLPHISMSE 357

Query: 363  FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
               TKKAY+FGY++HRLLL AL RR  DDRDH+G KRLDLAGPLL GLFRMLFRK+TRD+
Sbjct: 358  GSNTKKAYFFGYMVHRLLLAALDRREIDDRDHFGKKRLDLAGPLLSGLFRMLFRKVTRDI 417

Query: 423  RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTY 481
              ++Q+CV++ ++ +LQ A++  TIT+GL+YSLATGNWG Q  A  ++AGVSQVLNR T+
Sbjct: 418  YRHLQRCVEDQREFHLQAAVRHATITNGLRYSLATGNWGDQKKAMQSKAGVSQVLNRYTF 477

Query: 482  ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
            ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  I+VG
Sbjct: 478  ASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSNISVG 537

Query: 542  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
            + + PI+EFLEE+G  +  ++  A  P+ATK+FVNG W+G H DP  LV TLR LRR+ D
Sbjct: 538  TPSAPIVEFLEEFGLTSLIDMQGAD-PKATKVFVNGVWLGTHDDPGQLVDTLRDLRRKDD 596

Query: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQRESPEDGGW 659
            ++ EV VVRDIR KELRIYTD GR  RPLFIV++    LLIK+  + AL + E+ E   W
Sbjct: 597  ISHEVSVVRDIREKELRIYTDAGRLLRPLFIVDQPSMTLLIKRHHVEALNE-ETGEGWDW 655

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQAR--------LHPEEA------------Y 699
              LV  G IEY+DTEEEET +I M+  DL Q+R        + P+ +             
Sbjct: 656  TRLVQSGVIEYLDTEEEETVLICMSPYDLEQSREYKATNGHMPPDMSDATRRLRSAHTFA 715

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
            ADT+THCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT+A 
Sbjct: 716  ADTWTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQIRMDTMAN 775

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            +LYYPQKPL TTRAMEHL FR+LPAG NAIVAI CYSGYNQEDSVIMNQS+IDRG FRSL
Sbjct: 776  ILYYPQKPLATTRAMEHLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSL 835

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            ++R+++D EKK+G +  E+F +P R   + ++HG+Y+KLD DGL PPGTRVSGED+IIGK
Sbjct: 836  YYRTFQDMEKKVGVITMEEFEKPTRDTAIRLKHGTYEKLDVDGLVPPGTRVSGEDIIIGK 895

Query: 880  TTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            T P+    DE   ++  +T++D S  ++ +E+G++DQVL+TTN +G +FVKVRVRS R+P
Sbjct: 896  TAPLPPDSDELGMRSKMHTKKDVSTPMKSTESGIIDQVLITTNGEGAKFVKVRVRSTRVP 955

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            Q+GDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ KV
Sbjct: 956  QVGDKFASRHGQKGTIGITYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLVECLLSKV 1015

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            A   G+EGDATPFTD+TV  +S  L   G+Q RG E MYNGHTGR+L A ++LGPTYYQR
Sbjct: 1016 ATLSGQEGDATPFTDLTVKGVSDILFSLGFQSRGLEVMYNGHTGRKLQAQVYLGPTYYQR 1075

Query: 1058 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 1117
            LKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG ++FLKER++D 
Sbjct: 1076 LKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGMANFLKERMYDA 1135

Query: 1118 SDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPR 1177
            SDAYR+H+C+ CGL A+ANL+K++FECR C+N++ I Q+HIPYA KLLFQELM+M IA R
Sbjct: 1136 SDAYRLHICDLCGLTAVANLRKSTFECRACRNRSAISQIHIPYAAKLLFQELMSMGIASR 1195

Query: 1178 M 1178
            +
Sbjct: 1196 L 1196


>gi|409193805|gb|AFV31136.1| RPB2 [Amoeboaphelidium protococcarum]
          Length = 1174

 Score = 1560 bits (4039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 749/1179 (63%), Positives = 927/1179 (78%), Gaps = 25/1179 (2%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            +ITQE+ W VIS++FEEKGLVRQQLDSFD FIQNTMQE+VDE + + ++  SQ + GQ+ 
Sbjct: 2    DITQENCWQVISSFFEEKGLVRQQLDSFDSFIQNTMQELVDEHSQLVLQSNSQFS-GQEG 60

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR--VIKK 139
            D     + I FGQ+YLSKP+ TE DG +  L P  ARLRNLTY+APLY+D+ K   V   
Sbjct: 61   DVTRR-HVIQFGQVYLSKPLHTEKDGMSTPLLPSMARLRNLTYAAPLYIDIKKTTYVADP 119

Query: 140  GHD--------GEEVTETQD---FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
             H+         E   E +D   + ++F+GKVP+M++SSYC L  +S  +L  +GECPYD
Sbjct: 120  NHELNQGIVNVNEMHLEQEDEVMYERIFLGKVPLMVKSSYCALSSSSNHELMGMGECPYD 179

Query: 189  QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
            QGGYFIINGSEKVLIAQE+M+ N VYVF K  P+ Y+Y AE+RS  E   +  S +FV+M
Sbjct: 180  QGGYFIINGSEKVLIAQERMANNQVYVFAKSPPSPYSYTAEIRSAVERGGKNASAVFVKM 239

Query: 249  LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
            LSR + KG +SGQYIR  +PYI+ +IPI IVFRALG VADKDIL HI YD +DTQM++LL
Sbjct: 240  LSRLADKG-TSGQYIRCQIPYIKQDIPIGIVFRALGVVADKDILSHIVYDPEDTQMLDLL 298

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            +P +EEAF IQ+Q VALD+IGKRG TVGV R++RIKYA+EILQKE LPHVG  +  E+KK
Sbjct: 299  KPCIEEAFTIQDQNVALDFIGKRGTTVGVRREQRIKYAREILQKEFLPHVGVEEHSESKK 358

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            A++FGY+I+RLL CAL RR  DDRDH+  KRLDLAGPLLGGLFRMLFRKLT DV  Y+QK
Sbjct: 359  AFFFGYMINRLLQCALERRELDDRDHFAKKRLDLAGPLLGGLFRMLFRKLTTDVGKYLQK 418

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 487
            C++ G++ NL  A+K + ITSGLKYS+ATGNWG Q+ A  TRAGVSQVLNR TY STLSH
Sbjct: 419  CINEGREFNLPLAVKHQIITSGLKYSIATGNWGDQSKAMSTRAGVSQVLNRYTYISTLSH 478

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRR N+PIGREGKLAKPRQLHNSQ+GM+CPAE+PEGQACGLVKNLALM Y++VGS   P+
Sbjct: 479  LRRCNAPIGREGKLAKPRQLHNSQFGMVCPAESPEGQACGLVKNLALMAYVSVGSPTSPV 538

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 607
            LEFLEEW  EN  +++P+ I  ATK+FVNG WVGIHRDP+ML + L++LRR +D++ EV 
Sbjct: 539  LEFLEEWAMENLADVNPSFIGGATKVFVNGVWVGIHRDPDMLAENLKQLRRSLDLSQEVS 598

Query: 608  VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGF 667
            +VRD R +ELR+YTD GR  RPLFIV+   L++ K  +  L+++E     GW+ L+A G 
Sbjct: 599  IVRDYRDRELRLYTDSGRVCRPLFIVKDGALVLTKNHVRLLEKKEI----GWNQLLADGV 654

Query: 668  IEYIDTEEEETTMISMTINDLVQARLHPEEAYAD--TYTHCEIHPSLILGVCASIIPFPD 725
            +EYIDTEEEET +ISMT  DLV++++       D   +THCE+HPSL+ GV AS IPFPD
Sbjct: 655  VEYIDTEEEETALISMTPEDLVESKMRAMNGQPDLKKWTHCELHPSLMFGVSASTIPFPD 714

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRN Y ++  KQ +G+Y+TN+Q RMDTL+ VL+YPQKPLVTTRAMEHLH+R+LPAG
Sbjct: 715  HNQSPRNCYSASQSKQTIGVYLTNFQQRMDTLSSVLFYPQKPLVTTRAMEHLHYRELPAG 774

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
             NAIVAIAC+ GYNQEDS++M+QS+IDRG FRS FFR+Y ++ KK+G L  E+  +P+  
Sbjct: 775  QNAIVAIACHGGYNQEDSILMSQSAIDRGLFRSFFFRTYTEQVKKVGALELEEIEKPNPR 834

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSIS 903
            +T+  R  +Y+KLD DGL PPGTRVSG+D+++GKT PI  D E  GQ  +R+ +RD S +
Sbjct: 835  DTLIRRGNNYEKLDADGLVPPGTRVSGDDILVGKTVPIPVDSEELGQRTARHVKRDSSAT 894

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
            +R +E G+VDQVLLTTN   L+  K RVRSV+IPQ+GDK  SRHGQKG +GM Y QED+P
Sbjct: 895  MRSTEYGVVDQVLLTTNDLDLKMCKTRVRSVKIPQVGDKHCSRHGQKGVLGMLYRQEDLP 954

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023
            +T +GI PD+I+NPHAIPSRMTIG LIEC++ KV+A  G EGD TPFTDVTV++IS AL 
Sbjct: 955  YTADGIVPDVIINPHAIPSRMTIGHLIECLLSKVSALTGDEGDGTPFTDVTVEDISNALA 1014

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
            KCGYQ RGFE +YNG TG++L A IF+GPT+YQRLKHMVDDKIH+R RGPVQILTRQP E
Sbjct: 1015 KCGYQKRGFEVLYNGQTGQKLAANIFIGPTFYQRLKHMVDDKIHARARGPVQILTRQPVE 1074

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE 1143
            GRSRDGGLRFGEME D ++AHGA+ FLKERLFD SDA+RVHVC+ CGL+ IANL KNS+E
Sbjct: 1075 GRSRDGGLRFGEMEHDVIVAHGAAMFLKERLFDVSDAFRVHVCDLCGLMCIANLSKNSYE 1134

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
            CR C NKT I Q+H+PYA KLLFQELM+M IAPR++  E
Sbjct: 1135 CRICHNKTQISQIHLPYATKLLFQELMSMNIAPRIVVDE 1173


>gi|328859896|gb|EGG09004.1| hypothetical protein MELLADRAFT_47615 [Melampsora larici-populina
            98AG31]
          Length = 1257

 Score = 1559 bits (4037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/1215 (61%), Positives = 920/1215 (75%), Gaps = 51/1215 (4%)

Query: 13   QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
            Q  + D    ITQED W VISA+F E+ LV QQ+ SFD F+  TMQE+VDE+  + I  +
Sbjct: 31   QDYDLDNSNSITQEDCWQVISAFFNERNLVSQQISSFDGFVNTTMQELVDETGSL-ILEQ 89

Query: 73   SQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
            S     +  D  +  Y+ISFGQIYLS+P MTESDG  + +FP  ARLRNLTYSAPLYVD+
Sbjct: 90   SMQYTDKAGDLTKR-YEISFGQIYLSRPTMTESDGTVSPMFPNEARLRNLTYSAPLYVDM 148

Query: 133  TKRVIKKGHDGEEVT------------ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 180
            +K       + +EVT              ++ ++++IGKVPIMLRS +C L +  ++ L 
Sbjct: 149  SKSNKVATGEFDEVTGEPIYISDDDDNPDKNSSQIYIGKVPIMLRSEFCILDKLDDRGLY 208

Query: 181  ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240
            +L ECP+DQGGYF+INGSEKVLIAQE+M+ NHVYVF K  P+  ++++E+RS  E  ++ 
Sbjct: 209  DLNECPFDQGGYFVINGSEKVLIAQERMAANHVYVFAKAAPSPISFLSEIRSAVEKGSKT 268

Query: 241  PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ 300
             STM V+M     A+    G  I+ TLPYIR +IPI++VFRALG + DKDIL+HICYD  
Sbjct: 269  VSTMQVKMFGGHKAEKAGGGATIKTTLPYIRNDIPIVVVFRALGIIPDKDILDHICYDRN 328

Query: 301  DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGT 360
            D  M E+L+P LE++F IQ Q+VALD+IG+RG   G++R+KR+KYA+EILQKEMLPH+  
Sbjct: 329  DIDMFEMLKPCLEDSFPIQEQEVALDFIGRRGTATGLSREKRLKYAEEILQKEMLPHISM 388

Query: 361  GDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
             +  + KKAY+FGY++HRLLL AL RR  DDRDH+G KRLDLAGPLL GLFRMLFRKLT+
Sbjct: 389  SEGQQGKKAYFFGYMVHRLLLAALERRDLDDRDHFGKKRLDLAGPLLAGLFRMLFRKLTK 448

Query: 421  DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRL 479
            DV  ++QKCV+  K  NL  A+K+ TIT+GLKYSLATGNWG Q  A   RAGVSQVLNR 
Sbjct: 449  DVYRHLQKCVEMQKPFNLNTAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRY 508

Query: 480  TYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 539
            T+ASTLSHLRR N+PIGR+GK+AKPRQLHNS WGM+CPAETPEGQACGLVKNLALM YI+
Sbjct: 509  TFASTLSHLRRCNTPIGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYIS 568

Query: 540  VGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRR 599
            VGS + PI+EFLEEWG E+ +E S A +   TK+FVNG W G+HR P  L+ T++RLRR 
Sbjct: 569  VGSPSAPIVEFLEEWGMESLDEFS-ADMATGTKVFVNGVWQGVHRSPAELLDTIKRLRRC 627

Query: 600  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES------ 653
             D+  EV VVRD+R +ELR++TD GR  RPLFIVE Q+LL+ K  +  L           
Sbjct: 628  GDIEPEVSVVRDVRERELRVFTDGGRVCRPLFIVENQQLLLTKDHVEWLSNGYVTGTEDP 687

Query: 654  ----PEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA------- 698
                PED G    W  LVAKG +EY+D EEEET MI MT  DL Q+R + E         
Sbjct: 688  NGIVPEDEGQPFGWSQLVAKGIVEYLDAEEEETVMICMTPEDLEQSREYQETGQVPKEVF 747

Query: 699  ------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746
                        Y+ T+THCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y
Sbjct: 748  DPAARLKGNTSMYSHTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVY 807

Query: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806
            +TN++ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIM
Sbjct: 808  LTNFRMRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIM 867

Query: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 866
            NQSSIDRG FRS ++RSY D+EKK G L  E+F +P R NT+ ++HG+Y+KLDDDG+  P
Sbjct: 868  NQSSIDRGLFRSFYYRSYMDQEKKAGALQMEEFEKPSRENTLRLKHGTYEKLDDDGIITP 927

Query: 867  GTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGL 924
            GTRVSG+D+IIGKT PI  D E  GQ  + +T+RD S+ L+ +E G++DQVL+TTN DGL
Sbjct: 928  GTRVSGDDIIIGKTAPIPPDSEELGQRMKTHTKRDVSMPLKSTENGIIDQVLITTNQDGL 987

Query: 925  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 984
            +FVKVR+RS RIP+ GDKF+SRHGQKGTVG+ Y QEDMP+T EGI PDII+NPHAIPSRM
Sbjct: 988  KFVKVRIRSTRIPETGDKFASRHGQKGTVGILYRQEDMPFTSEGICPDIIINPHAIPSRM 1047

Query: 985  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            TIG L+EC++ KV+   G EGDATPF++VTV+ IS  L   GYQ RG E MYNGHTGR+L
Sbjct: 1048 TIGHLVECLLSKVSTITGNEGDATPFSEVTVEAISSLLKDNGYQSRGLEIMYNGHTGRKL 1107

Query: 1045 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1104
             A  +LGPTYYQRLKHMV+DKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+H
Sbjct: 1108 RAQCYLGPTYYQRLKHMVNDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISH 1167

Query: 1105 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKL 1164
            G + FLKER+FD SDAYRVHVC+ CG++AIANLKK SFECR C+NKT I QV+IPYA KL
Sbjct: 1168 GIAGFLKERMFDVSDAYRVHVCDICGMVAIANLKKQSFECRACRNKTAISQVYIPYAAKL 1227

Query: 1165 LFQELMAMAIAPRML 1179
            LFQEL +M IA R +
Sbjct: 1228 LFQELQSMNIASRFV 1242


>gi|219116262|ref|XP_002178926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409693|gb|EEC49624.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1212

 Score = 1558 bits (4035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 757/1211 (62%), Positives = 925/1211 (76%), Gaps = 39/1211 (3%)

Query: 9    EEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 68
            EE+  +  + +E  +TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQE+VD+S DI 
Sbjct: 12   EEEGDEVMDIDEIPVTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIR 71

Query: 69   IRPESQHNPG--------QQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            + PE QH  G        +Q    + +++I FGQ+YLSKP   E DG    +FP  ARLR
Sbjct: 72   VSPEIQHMVGYDDEAYDREQEKETKFVFEIHFGQVYLSKPTTVEKDGTITNMFPHEARLR 131

Query: 121  NLTYSAPLYVDVTKRVIKKGHD----------GEEVTETQDFTKVFIGKVPIMLRSSYCT 170
            N+TYSAPLYVDV     + G +          GE V  T+   K F+G VPIMLRS +C 
Sbjct: 132  NMTYSAPLYVDVDLNQYQVGREVNVNDPSEDLGEPVA-TEHAKKEFLGYVPIMLRSLFCV 190

Query: 171  LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 230
            L    + DL++LGEC YDQGGYF+INGSEKV+IAQE++S NHVY FKK+QP+K+++V E 
Sbjct: 191  LSDKDDADLSDLGECVYDQGGYFVINGSEKVIIAQERLSNNHVYAFKKKQPSKFSWVIET 250

Query: 231  RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            RS  E+  RP ST++++M  +   +G   G  IR+TLPYIRT+IP++I+FRALG+VAD+D
Sbjct: 251  RSQVENSTRPVSTLYIQMYHK-GGRGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRD 309

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            I+EH+ YD  D +MM+L RPSLEEAFVIQ Q VALD+IG+RG+   VT++ R++YA+ IL
Sbjct: 310  IIEHVVYDLTDGEMMDLFRPSLEEAFVIQRQDVALDFIGRRGSARDVTKEDRMRYAQAIL 369

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            QKE+LPHVGT + CETKK ++ GY +H+LL+C LGR  EDDRDH+G KRLDLAGPLLGGL
Sbjct: 370  QKEVLPHVGTEEHCETKKGFFIGYAVHKLLMCRLGRAEEDDRDHFGKKRLDLAGPLLGGL 429

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRA 470
            FR+LFRKLT+DVR ++Q+C+D GK  N+  AIK+  IT GLKYSLATGNWG    A T+A
Sbjct: 430  FRVLFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNWGDKGMA-TKA 488

Query: 471  GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 530
            GVSQVLNRLTYAS+LSHLRR N+P+ R GK AKPRQLHN+ WGM+CPAETPEGQA GLVK
Sbjct: 489  GVSQVLNRLTYASSLSHLRRCNTPLARTGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVK 548

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEM 588
            NLALM YIT G+A  P+LEFLEE+ TEN  +I P+VI  P   KIFVNG WVGIHRDP+ 
Sbjct: 549  NLALMAYITTGTAQVPVLEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKA 608

Query: 589  LVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL 648
            L +T R LRR VD++ EV +VRDI  KE+RIYTD GR  RPLF+V++Q+L IKK  I+ L
Sbjct: 609  LEETFRSLRRMVDIDAEVSIVRDIADKEVRIYTDAGRICRPLFVVQEQKLAIKKHHIMQL 668

Query: 649  QQRESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
            Q  +  E    W DL+ +G +EYIDTEEEETTM++M  NDL        ++Y+ TYTHCE
Sbjct: 669  QGMDPNEKKLTWTDLLMEGLVEYIDTEEEETTMVAMEPNDLDSD-----DSYSSTYTHCE 723

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +NYQ RMDT+A+VL+YPQKP
Sbjct: 724  IHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKP 783

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTRAME LHFR+LP+G+N IV I  Y+GYNQEDS+I+NQS+IDRG FRS ++R Y D+
Sbjct: 784  LCTTRAMEFLHFRELPSGVNCIVGILVYTGYNQEDSLILNQSAIDRGLFRSSYYRCYIDQ 843

Query: 828  EKK-----MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
            EK      +G+L  E F +P   +T GM+HG Y KLDDDGL  PGTRVSG+DV+IGKT P
Sbjct: 844  EKASTVGTIGSLTSELFEKPSMDSTRGMKHGEYGKLDDDGLVAPGTRVSGDDVLIGKTAP 903

Query: 883  ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 942
            I  D   G  SRY++RD S S++ +E G+VD VL++T  +G RF KVR+R+VR PQIGDK
Sbjct: 904  I--DATAGMPSRYSKRDCSTSMKANEHGIVDNVLISTTKEGYRFTKVRIRNVRTPQIGDK 961

Query: 943  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
            F+SRHGQKGT+GMTY QEDMP+TVEGI PDIIVNPHAIPSRMTI QLIEC++GKV    G
Sbjct: 962  FASRHGQKGTIGMTYRQEDMPFTVEGIVPDIIVNPHAIPSRMTIAQLIECLLGKVVVFQG 1021

Query: 1003 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             EGDATPFTDVTV++IS  LH  GYQ  G E +Y GHTGR L A +F+GPT+YQRLKH+V
Sbjct: 1022 CEGDATPFTDVTVEDISTRLHAMGYQRHGNEALYQGHTGRPLNARVFIGPTFYQRLKHLV 1081

Query: 1063 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 1122
            DDK+HSR RGPV +LTRQP EGRSRDGGLR GEMERDC+I HG ++F+++R F  SD YR
Sbjct: 1082 DDKVHSRARGPVAMLTRQPLEGRSRDGGLRMGEMERDCLITHGCANFMRDRFFVNSDQYR 1141

Query: 1123 VHVCEHCGLIAIANLKKNSFECRG--CKNK-TDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            +H+CE CGL A ANLKK ++ECR   C  + T I QV IPYA KLL QEL +M I  R+ 
Sbjct: 1142 IHICERCGLTAQANLKKMTYECRSPMCVGRPTQICQVEIPYAAKLLLQELNSMCIQTRIY 1201

Query: 1180 TKEDTKQSKDH 1190
            TK  T +   +
Sbjct: 1202 TKNVTTRDNSY 1212


>gi|17552304|ref|NP_498047.1| Protein RPB-2 [Caenorhabditis elegans]
 gi|2507348|sp|Q10578.2|RPB2_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|351058294|emb|CCD65728.1| Protein RPB-2 [Caenorhabditis elegans]
          Length = 1193

 Score = 1558 bits (4034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 751/1189 (63%), Positives = 909/1189 (76%), Gaps = 26/1189 (2%)

Query: 18   DEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPES 73
            D+ +EI+    QE  W VISAYF+EKGLVRQQLDSFDEF+Q  +Q IV++S  +E++ E+
Sbjct: 19   DDSDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSEN 78

Query: 74   QHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT 133
            QH      + A+  + + F QIYLSKP   E DG    + P  ARLRNLTY++PLYVD+T
Sbjct: 79   QHLGTDMENPAK--FSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDIT 136

Query: 134  KRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF 193
            K V +     E+V     + KVF+GKVP+MLRSSYC L   +++DLTEL ECP D GGYF
Sbjct: 137  KVVTRDDSATEKV-----YDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYF 191

Query: 194  IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS 253
            +INGSEKVLIAQEKM+TN VYVF  +   KYA+  E RS  E+ +RP STM+V ML+R  
Sbjct: 192  VINGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKTECRSCLENSSRPTSTMWVNMLARGG 250

Query: 254  AKGGSS--GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPS 311
              G  +  GQ I   LPYI+ EIPI+IVFRALGFV+D+DIL HI YDF D +MME+++PS
Sbjct: 251  GGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPS 310

Query: 312  LEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYY 371
            L+EAFVIQ Q VAL++IG RGA  GVTR++RIKYA+EILQKE+LPHVG  + CETKKA++
Sbjct: 311  LDEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFF 370

Query: 372  FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 431
             GY++HRLLL ALGRR  DDRDH GNKRLDLAGPLL  LFR LFR L +++R   QK ++
Sbjct: 371  IGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYIN 430

Query: 432  NGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRR 490
               D  L   +K  TIT GL YSLATGNWG Q  A  +RAGVSQVLNRLTY +TLSHLRR
Sbjct: 431  KNDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRR 490

Query: 491  LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 550
             NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI+VGS   PILEF
Sbjct: 491  ANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEF 550

Query: 551  LEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV-NTEVGVV 609
            LEEW  EN EE+SP+ I  ATKIFVNG WVGIHR+P+ L+ TL++LRR++D+  +EV +V
Sbjct: 551  LEEWSMENLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMV 610

Query: 610  RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFI 668
            RDIR +E+RIYTD GR  RPL IVE Q+L +KKR I  L++     +   W DLV  G +
Sbjct: 611  RDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVV 670

Query: 669  EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            E ID+ EEET+MI+M   DL          Y DT+THCEIHP++ILGVCASIIPFPDHNQ
Sbjct: 671  ELIDSMEEETSMIAMMPEDLRSG------GYCDTHTHCEIHPAMILGVCASIIPFPDHNQ 724

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F +LPAGINA
Sbjct: 725  SPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINA 784

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAI  YSGYNQEDSVIMN S+IDRG FRS+F+RSYRD E  +    +E   +P R    
Sbjct: 785  IVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCS 844

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRH 906
            GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   P   D+      +Y +RD S  LR 
Sbjct: 845  GMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRS 904

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            SETG+VDQV+L+ N+DG +FVK+R+RSVR+PQIGDKF+SRHGQKGT+G+ Y QEDMP+T 
Sbjct: 905  SETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTA 964

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKC 1025
            EG+TPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATPF D V V  IS  L + 
Sbjct: 965  EGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEY 1024

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GY +RG E MYNGHTG++LT  IF GPTYYQRLKHMVDDKIHSR RGP+Q++ RQP EGR
Sbjct: 1025 GYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGR 1084

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECR 1145
            +RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V+VC +CGLI +ANL+ NSFEC+
Sbjct: 1085 ARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECK 1144

Query: 1146 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKG 1194
             C+NKT +  V IPYACKLLFQELM+M+IAPR++ K    +   H+ + 
Sbjct: 1145 ACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVKPRQSKRSKHQSEA 1193


>gi|170591608|ref|XP_001900562.1| DNA-directed RNA polymerase II second largest subunit [Brugia malayi]
 gi|158592174|gb|EDP30776.1| DNA-directed RNA polymerase II second largest subunit, putative
            [Brugia malayi]
          Length = 1185

 Score = 1557 bits (4032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 764/1202 (63%), Positives = 910/1202 (75%), Gaps = 40/1202 (3%)

Query: 1    MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            M E+D + EE   +E+E+   E  QE  W VISAYF+EKGLVRQQLDSFDEFIQ  +Q I
Sbjct: 1    MFEEDDETEEALFEEDEEISSEQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRI 60

Query: 61   VDESADIEIRPESQHNPGQQSDFAETI-YKISFGQIYLSKPMMTESDGETATLFPKAARL 119
            V++S  +E++ E QH  G   D    I + + F QIYLSKP   E DG    + P  ARL
Sbjct: 61   VEDSPPVELQSEVQHFSG---DVENPIKFALKFDQIYLSKPTHWEKDGAPTPMMPNEARL 117

Query: 120  RNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDL 179
            RNLTYS+PLY+D+TK + + G   EE  ET+ + KVF+GK+PIMLRSSYC L   S++DL
Sbjct: 118  RNLTYSSPLYIDITKTMTRSG---EEPKETK-YEKVFVGKIPIMLRSSYCMLANMSDRDL 173

Query: 180  TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQ-- 237
            +EL ECP D GGYF+INGSEKVLIAQEKM+TN VYVF  +   KY Y  E RS  E+   
Sbjct: 174  SELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKD-GKYTYKTECRSCLENSRQ 232

Query: 238  ------------NRPPSTMFVRMLSRTS--AKGGSSGQYIRATLPYIRTEIPIIIVFRAL 283
                         RP ST++V ML R    +K  + G  I A LPYI+ EIP++IVFRAL
Sbjct: 233  VLKQYFLSILEVTRPTSTLWVNMLPRGGGGSKKSAMGPKIIAILPYIKQEIPVMIVFRAL 292

Query: 284  GFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRI 343
            GFV+D DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RI
Sbjct: 293  GFVSDHDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTKEQRI 352

Query: 344  KYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLA 403
            KYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDH GNKRLDLA
Sbjct: 353  KYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHMGNKRLDLA 412

Query: 404  GPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-Q 462
            GPLL  LFR LFR L ++VR   QK ++   D  L   +K   IT GL YSLATGNWG Q
Sbjct: 413  GPLLAFLFRALFRNLLKEVRLTAQKYINKNGDFMLDLCVKTPLITRGLAYSLATGNWGDQ 472

Query: 463  ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE 522
              A  +RAGVSQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPE
Sbjct: 473  KKAHQSRAGVSQVLNRLTYTATLSHLRRCNSPIGREGKLAKPRQLHNTQWGMVCPAETPE 532

Query: 523  GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI 582
            GQA GLVKNLALM YI+VGS   PILEFLEEW  EN EE++P  I  ATKIFVNG WVGI
Sbjct: 533  GQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVAPTAIADATKIFVNGAWVGI 592

Query: 583  HRDPEMLVKTLRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK 641
            HRDPE L+ TL++LRR +D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L +K
Sbjct: 593  HRDPEQLMTTLKKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALK 652

Query: 642  KRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD 701
            ++ I  L+         W +LVA G +E ID  EEET M++M   DL          Y D
Sbjct: 653  RKHIDQLKDNSYT----WSELVAGGVVELIDAMEEETVMLAMMPEDLKAG------GYCD 702

Query: 702  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
            TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VL
Sbjct: 703  TYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVL 762

Query: 762  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
            YYPQKPLVTTR+ME+L F +LPAGINAIVAI  Y+GYNQEDS+IMNQS IDRG FRS+F+
Sbjct: 763  YYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFRSVFY 822

Query: 822  RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
            RSYRD+E  +    +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT 
Sbjct: 823  RSYRDQEANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTI 882

Query: 882  --PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
              P ++D+      RYT++D S  LR SETG+VDQV+LT N DG +FVK+RVRSVR+PQI
Sbjct: 883  SLPDTEDDLDAAIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQI 942

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKF+SRHGQKGT+GM Y QEDMP+T EGITPDII+NPHA+PSRMTIG LIEC+ GK++A
Sbjct: 943  GDKFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSA 1002

Query: 1000 HMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            + G+ GDATPF D V V  IS  L + GY +RG E MYNGHTGR+LT  +FLGPTYYQRL
Sbjct: 1003 NKGEIGDATPFNDTVNVQKISNLLQEYGYHLRGNEIMYNGHTGRKLTIQVFLGPTYYQRL 1062

Query: 1059 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQS 1118
            KHMVDDKIHSR RGPVQ++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ S
Sbjct: 1063 KHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVS 1122

Query: 1119 DAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
            D Y V++C +CGLI +ANL+ NSFEC+ C+NKT +    IPYACKLLFQELM+M+IAPR+
Sbjct: 1123 DPYHVYICNNCGLIVVANLRTNSFECKACRNKTQVSAFRIPYACKLLFQELMSMSIAPRL 1182

Query: 1179 LT 1180
            + 
Sbjct: 1183 MV 1184


>gi|308798899|ref|XP_003074229.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
 gi|116000401|emb|CAL50081.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
          Length = 999

 Score = 1557 bits (4031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 735/1024 (71%), Positives = 858/1024 (83%), Gaps = 32/1024 (3%)

Query: 163  MLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 222
            MLRS YC+L+ +++K+LTELGECPYD+GGYF+INGSEKVLIAQE+MSTNHVYVF+K+QP+
Sbjct: 1    MLRSDYCSLHGHTDKELTELGECPYDEGGYFVINGSEKVLIAQERMSTNHVYVFEKKQPS 60

Query: 223  KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRA 282
            K+ + AE RS  E  +R  S+  +R +     K       IR TLPYIRT+IPI +VFRA
Sbjct: 61   KFMWQAECRSQPERGSRGASSCVMRQMHAVGTKDAPGP--IRCTLPYIRTDIPIFVVFRA 118

Query: 283  LGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKR 342
            LGFVADKDILEHICYD  D +MME+LRPS+EEAFVIQ+Q+VALD+IGKRG+ VGV+R+KR
Sbjct: 119  LGFVADKDILEHICYDLADNEMMEMLRPSIEEAFVIQSQEVALDFIGKRGSAVGVSREKR 178

Query: 343  IKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDL 402
            IKYAKEILQKE+LPHVG  + CETKKAY+ GY+IHRLLLC+LGRR EDDRDHYGNKRLDL
Sbjct: 179  IKYAKEILQKELLPHVGVREDCETKKAYFLGYMIHRLLLCSLGRRPEDDRDHYGNKRLDL 238

Query: 403  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQ 462
             GPLL  LFR LFRKLT+DVR Y Q+C+D+GK++ LQ AIKAKTIT GLKYSLATGNWG 
Sbjct: 239  GGPLLAQLFRQLFRKLTKDVRLYCQRCIDSGKEIQLQLAIKAKTITQGLKYSLATGNWGS 298

Query: 463  ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE 522
              A   RAGVSQVLNRL+Y+STLSHLRR+NSPIGREGKLAKPRQLHNS WGM+CPAETPE
Sbjct: 299  QGAQDIRAGVSQVLNRLSYSSTLSHLRRINSPIGREGKLAKPRQLHNSLWGMICPAETPE 358

Query: 523  GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI 582
            GQA GLVKNLALM  ++VGS + PILEFL+EW  EN EEISP++I ++TKIF+NG WVG+
Sbjct: 359  GQAVGLVKNLALMALVSVGSPSEPILEFLDEWTMENLEEISPSLIAESTKIFLNGVWVGV 418

Query: 583  HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EKQRLLIK 641
            HRDP  LV+TLR+LRR+ DV++ V VV DIRLKELR+YTDYGRC+RPLFIV + Q+L IK
Sbjct: 419  HRDPADLVRTLRKLRRQCDVDSSVSVVHDIRLKELRLYTDYGRCTRPLFIVDDDQKLRIK 478

Query: 642  KRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE--AY 699
            K+ I  L +++      W++LV  GFIEY+DTEEEETTMISMTI+DL  AR   +     
Sbjct: 479  KQHIELLTEKDV-TGYSWNELVTSGFIEYVDTEEEETTMISMTIDDLAAARQSADRKTGV 537

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
            A  YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+YVTNYQ RMDTL Y
Sbjct: 538  AIRYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQIRMDTLGY 597

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            VL+YPQKPLVTTRAME+LHFR+LPAG NA+VAI CY+GYNQEDSV+MNQS+IDRG FRSL
Sbjct: 598  VLFYPQKPLVTTRAMEYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSL 657

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            ++RS++DEEKK G+L +E+F RPDR   +GMRHG+YDKLDDDGL      +S        
Sbjct: 658  YYRSFKDEEKKQGSLSREEFERPDRDTCLGMRHGTYDKLDDDGLIYDSAVLS-------- 709

Query: 880  TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
                          R++++D S  ++H+ETG++DQVLLTTN  GLRFVK+RVRS+R PQ+
Sbjct: 710  -------------KRFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRSMRTPQV 756

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKFSSRHGQKGTVGMTYTQEDMP+T EGITPDIIVNPHAIPSRMTIGQL+ECIMGKVAA
Sbjct: 757  GDKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAA 816

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
             MGKEGDATPFT VT ++IS  LHKCGYQ RG E MYNGHTGR L A IF+GPTYYQRLK
Sbjct: 817  CMGKEGDATPFTPVTAEDISTMLHKCGYQKRGNEVMYNGHTGRMLDAQIFIGPTYYQRLK 876

Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
            HMVDDKIHSRGRGPVQILTRQP EGRSRDGGLRFGEMERDC+++HGA+ FLKERL DQSD
Sbjct: 877  HMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIMSHGAASFLKERLMDQSD 936

Query: 1120 AYRVHVCEHCGLIAIANLKKNSFECRGCKN---KTDIVQVHIPYACKLLFQELMAMAIAP 1176
            AYR+HVC+ CGLIA+ANLK  +FEC  CKN   +T +VQV +PYACKLLFQELM+MAIAP
Sbjct: 937  AYRIHVCQKCGLIAVANLKNQTFEC--CKNPSERTSVVQVMVPYACKLLFQELMSMAIAP 994

Query: 1177 RMLT 1180
            R++T
Sbjct: 995  RLIT 998


>gi|355712719|gb|AES04443.1| polymerase II polypeptide B, 140kDa [Mustela putorius furo]
          Length = 1104

 Score = 1556 bits (4030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 754/1116 (67%), Positives = 895/1116 (80%), Gaps = 19/1116 (1%)

Query: 51   EFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETA 110
            EFIQ ++Q IV+++  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  +
Sbjct: 1    EFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPS 58

Query: 111  TLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCT 170
             + P  ARLRNLTYSAPLYVD+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC 
Sbjct: 59   PMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCL 114

Query: 171  LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 230
            L   +++DL EL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E 
Sbjct: 115  LNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGEC 173

Query: 231  RSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVAD 288
            RS  E+ +RP ST++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D
Sbjct: 174  RSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSD 233

Query: 289  KDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKE 348
            +DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE
Sbjct: 234  RDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKE 293

Query: 349  ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG 408
            +LQKEMLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL 
Sbjct: 294  VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 353

Query: 409  GLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAG 467
             LFR +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A  
Sbjct: 354  FLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQ 413

Query: 468  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
             RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A G
Sbjct: 414  ARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVG 473

Query: 528  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
            LVKNLALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE
Sbjct: 474  LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPE 533

Query: 588  MLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 646
             L+ TLR+LRR++D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I 
Sbjct: 534  QLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHID 593

Query: 647  ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 706
             L++RE   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHC
Sbjct: 594  QLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHC 648

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            EIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQK
Sbjct: 649  EIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQK 708

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
            PLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY++
Sbjct: 709  PLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKE 768

Query: 827  EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PIS 884
            +E K G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P +
Sbjct: 769  QESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPEN 828

Query: 885  QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
            +DE +G   RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+
Sbjct: 829  EDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFA 888

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ 
Sbjct: 889  SRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEI 948

Query: 1005 GDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            GDATPF D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVD
Sbjct: 949  GDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVD 1008

Query: 1064 DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 1123
            DKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+V
Sbjct: 1009 DKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQV 1068

Query: 1124 HVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 1159
            HVC  CG++AIAN + +++ECRGC+NKT I  V +P
Sbjct: 1069 HVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1104


>gi|448117721|ref|XP_004203325.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
 gi|359384193|emb|CCE78897.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
          Length = 1233

 Score = 1556 bits (4028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/1232 (61%), Positives = 934/1232 (75%), Gaps = 65/1232 (5%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            +ED Y Y+        D+ E IT ED W VIS++F+EKGLV QQLDSFDEFI+ T+QE+V
Sbjct: 7    LEDPYLYD--------DDSESITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELV 58

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
             E + + +   +QH    + D     Y+I+FG+IY+SKP  TE DG T  +FP+ ARLRN
Sbjct: 59   WEDSHLILDQPAQHT--SEDDHENRRYEIAFGKIYISKPTQTEGDGTTHPMFPQEARLRN 116

Query: 122  LTYSAPLYVDVTKRVIKKGHDG----------EEVTETQDFTKVFIGKVPIMLRSSYCTL 171
            LTYS+PLYVD+TKRV K   +           E V   +  TKV++GKVPIMLRS +C L
Sbjct: 117  LTYSSPLYVDMTKRVFKSDDNNRKDNELEWIEESVENEEPQTKVYLGKVPIMLRSKFCML 176

Query: 172  YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 231
                E +  EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+R
Sbjct: 177  RGLGEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIR 236

Query: 232  SMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 291
            S  E  +R  S+M +++  R     G+SG+ I+ATLPYI+ +IPI+IVFRALG V D DI
Sbjct: 237  SALEKGSRLISSMQIKLYGRDDK--GTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDI 294

Query: 292  LEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQ 351
            LEHICYD  D QM+E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQ
Sbjct: 295  LEHICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQ 353

Query: 352  KEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 411
            KE+LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LF
Sbjct: 354  KELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLF 413

Query: 412  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 470
            R+LFRKLT+D+  Y+Q+CV+N K+ N   A+K++TIT GL+YSLATGNWG Q  A  +RA
Sbjct: 414  RILFRKLTKDIYNYMQRCVENDKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRA 473

Query: 471  GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 530
            GVSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVK
Sbjct: 474  GVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 533

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590
            NL+LM  I+VG+ + PIL FLEEWG E  E+  P+  P+AT++FVNG WVG HR+P  LV
Sbjct: 534  NLSLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPEATRVFVNGVWVGTHREPAHLV 593

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKR 643
            +T+R LRRR D++ EV +VRDIR +E +I+TD GR  RPLFIV+       K  L +KK 
Sbjct: 594  ETMRNLRRRGDISPEVSIVRDIREREFKIFTDAGRVYRPLFIVDDDSDSETKGELKLKKE 653

Query: 644  DIIALQQRESPE--------DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR--- 692
             +  L   E  E        +  W  L+  G +EY+D EEEET MI+MT  DL  +R   
Sbjct: 654  HVNKLLNAEYDEFSDEPDTLNYSWSSLLNDGVVEYVDAEEEETIMIAMTPEDLEASRSSL 713

Query: 693  --------------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
                                + P  + ++T+THCEIHPS+ILGV ASIIPFPDHNQSPRN
Sbjct: 714  SETQQKNLQLEEQESDPAKRIRPTFSGSNTFTHCEIHPSMILGVAASIIPFPDHNQSPRN 773

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAI
Sbjct: 774  TYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAI 833

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
            ACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++H
Sbjct: 834  ACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLKLKH 893

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 910
            G+Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G
Sbjct: 894  GTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESG 953

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ 
Sbjct: 954  IVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVV 1013

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVTV+ +SK L + GYQ R
Sbjct: 1014 PDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTVEAVSKLLREHGYQSR 1073

Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
            GFE MYNGHTG++L A IF GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGG
Sbjct: 1074 GFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGG 1133

Query: 1091 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKN 1149
            LRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKN
Sbjct: 1134 LRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKN 1193

Query: 1150 KTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            KT+I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1194 KTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1225


>gi|344234576|gb|EGV66444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
            tenuis ATCC 10573]
          Length = 1233

 Score = 1556 bits (4028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 755/1234 (61%), Positives = 933/1234 (75%), Gaps = 67/1234 (5%)

Query: 1    MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            ++ED Y Y++ H          IT ED W VIS++F+EKGLV QQLDSFDEFI+ T+QE+
Sbjct: 6    VVEDQYAYDDDHS---------ITPEDCWLVISSFFQEKGLVSQQLDSFDEFIETTIQEL 56

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            V E + + +   +QH    + DF    Y+ISFG+IY+SKP  TE DG T  +FP+ ARLR
Sbjct: 57   VWEDSHLVLDQPAQHT--SEDDFENRRYEISFGKIYISKPTQTEGDGTTHPMFPQEARLR 114

Query: 121  NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDF----------TKVFIGKVPIMLRSSYCT 170
            NLTYS+PLYVD+TKRV K   +  +  E +            TKV++GKVPIMLRS +C 
Sbjct: 115  NLTYSSPLYVDMTKRVFKSDDNDRKNNELEWIEEHVEGEGTDTKVYLGKVPIMLRSKFCM 174

Query: 171  LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 230
            L   +E +  EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+
Sbjct: 175  LRDLAEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAGPSPISHVAEI 234

Query: 231  RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            RS  E  +R  S++ +++  R      +SG+ I+ATLPYI+ +IPI+IVFRALG V D D
Sbjct: 235  RSALEKGSRLISSLQIKLYGRDDR--AASGRTIKATLPYIKEDIPIVIVFRALGIVPDGD 292

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            ILEHICYD  D QM+E+L+P +EE FVIQ Q+VALD+IG+RG  +G+ R+KRI+YAK+IL
Sbjct: 293  ILEHICYDANDWQMLEMLKPCVEEGFVIQEQEVALDFIGRRGV-LGIRREKRIQYAKDIL 351

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            QKE+LP++   +   T+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  L
Sbjct: 352  QKELLPNITQEEGFATRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANL 411

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FR+LFRKLTRD+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +R
Sbjct: 412  FRILFRKLTRDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSR 471

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLV
Sbjct: 472  AGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLV 531

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNL+LM  I+VG+++ PIL FLEEWG E  E+ SP+  P +T++FVNG WVG HRDP  L
Sbjct: 532  KNLSLMSCISVGTSSEPILVFLEEWGLEPLEDYSPSTSPDSTRVFVNGVWVGTHRDPSSL 591

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK 642
            V+T+R LRR+ D++ EV ++RDIR +E +I+TD GR  RPLFIV+       K  L++ K
Sbjct: 592  VETIRSLRRKGDISPEVSIIRDIREREFKIFTDAGRVYRPLFIVDDNPYSETKGELMLNK 651

Query: 643  RDIIALQQRE--------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL------ 688
              +  L   E          E  GW  LV  G IEY+D EEEET MI+MT  DL      
Sbjct: 652  SHVKKLMDSEYDDYVYDDEQEAYGWSSLVRDGIIEYVDAEEEETIMIAMTPEDLESSKST 711

Query: 689  ----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSP 730
                 Q  +  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSP
Sbjct: 712  LSEAQQKSMQMEEQEKDPAKRIKPTFSGNLHTFTHCEIHPSMILGVAASIIPFPDHNQSP 771

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIV
Sbjct: 772  RNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV 831

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AIACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F RP RS+T+ +
Sbjct: 832  AIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFERPSRSDTLRL 891

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSE 908
            +HG+Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E
Sbjct: 892  KHGTYEKLDDDGLITPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTE 951

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
            +G+VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +G
Sbjct: 952  SGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRNEDMPFTSQG 1011

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            I PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ
Sbjct: 1012 IVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEEVSKLLREHGYQ 1071

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
             RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRD
Sbjct: 1072 SRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRD 1131

Query: 1089 GGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGC 1147
            GGLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR C
Sbjct: 1132 GGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRAC 1191

Query: 1148 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            KNKT+I Q+HIPYA KLLFQELMAM I+PRM T+
Sbjct: 1192 KNKTNIYQIHIPYAAKLLFQELMAMNISPRMYTE 1225


>gi|432961296|ref|XP_004086596.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Oryzias latipes]
          Length = 1120

 Score = 1556 bits (4028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 760/1183 (64%), Positives = 907/1183 (76%), Gaps = 73/1183 (6%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E +Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +    + K  F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHTSGEVEEPPRFLLK--FEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK +IK   +GE+  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTIIK---EGEDQLQTQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY AE RS  E  +RP ST
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTAECRSCLEXSSRPTST 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V M++R     K  + GQ I +TLPYIR E+PIIIVFRALGFV+D+DILEHI YDF D
Sbjct: 235  IWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDD 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RIKYAKE+LQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGVSQVLNRLT 480
            +R Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG    A   RAGVSQVLNRLT
Sbjct: 415  IRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWH 660
            D+                                     I   D++              
Sbjct: 595  DI-------------------------------------IVSEDLV-------------- 603

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASI 720
               A G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS+ILGVCASI
Sbjct: 604  ---ASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPSMILGVCASI 656

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR
Sbjct: 657  IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFR 716

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
            +LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F 
Sbjct: 717  ELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFE 776

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRR 898
            +P R    GMRH  YDKLDDDGL  PG RVSGEDVIIGKT   P + DE      RYT+R
Sbjct: 777  KPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNKRYTKR 836

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y 
Sbjct: 837  DCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYR 896

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDN 1017
            QEDMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATPF D V V  
Sbjct: 897  QEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQK 956

Query: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1077
            +S  L + GY +RG E +YNG TGR+LT+ IF+GPTYYQRLKHMVDDKIHSR RGPVQIL
Sbjct: 957  VSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQIL 1016

Query: 1078 TRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANL 1137
             RQP EGRSRDGGLRFGEMERDC IAHGA+ FLKERLF+ SD Y+VHVC  CGL+AIAN 
Sbjct: 1017 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANT 1076

Query: 1138 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            + +++ECRGC+NKT I  + +PYACKLLFQELM+M+IAPRM+T
Sbjct: 1077 RTHTYECRGCRNKTQISLIRMPYACKLLFQELMSMSIAPRMMT 1119


>gi|448120161|ref|XP_004203908.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
 gi|359384776|emb|CCE78311.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
          Length = 1233

 Score = 1555 bits (4027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/1232 (61%), Positives = 934/1232 (75%), Gaps = 65/1232 (5%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            +ED Y Y+        D+ E IT ED W VIS++F+EKGLV QQLDSFDEFI+ T+QE+V
Sbjct: 7    LEDPYLYD--------DDSESITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELV 58

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
             E + + +   +QH    + D     Y+I+FG+IY+SKP  TE DG T  +FP+ ARLRN
Sbjct: 59   WEDSHLILDQPAQHT--SEDDHENRRYEIAFGKIYISKPTQTEGDGTTHPMFPQEARLRN 116

Query: 122  LTYSAPLYVDVTKRVIKKGHDG----------EEVTETQDFTKVFIGKVPIMLRSSYCTL 171
            LTYS+PLYVD+TKRV K   +           E V   +  TKV++GKVPIMLRS +C L
Sbjct: 117  LTYSSPLYVDMTKRVFKSDDNNRKDNELEWIEESVENEEPQTKVYLGKVPIMLRSKFCML 176

Query: 172  YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 231
                E +  EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+R
Sbjct: 177  RGLGEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIR 236

Query: 232  SMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 291
            S  E  +R  S+M +++  R     G+SG+ I+ATLPYI+ +IPI+IVFRALG V D DI
Sbjct: 237  SALEKGSRLISSMQIKLYGRDDK--GTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDI 294

Query: 292  LEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQ 351
            LEHICYD  D QM+E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQ
Sbjct: 295  LEHICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQ 353

Query: 352  KEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 411
            KE+LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LF
Sbjct: 354  KELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLF 413

Query: 412  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 470
            R+LFRKLT+D+  Y+Q+CV+N K+ N   A+K++TIT GL+YSLATGNWG Q  A  +RA
Sbjct: 414  RILFRKLTKDIYNYMQRCVENDKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRA 473

Query: 471  GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 530
            GVSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVK
Sbjct: 474  GVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 533

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590
            NL+LM  I+VG+ + PIL FLEEWG E  E+  P+  P+AT++FVNG WVG HR+P  LV
Sbjct: 534  NLSLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPEATRVFVNGVWVGTHREPAHLV 593

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKR 643
            +T+R LRRR D++ EV +VRDIR +E +I+TD GR  RPLFIV+       K  L +KK 
Sbjct: 594  ETMRNLRRRGDISPEVSIVRDIREREFKIFTDAGRVYRPLFIVDDDSDSETKGELKLKKE 653

Query: 644  DIIALQQRESPE--------DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR--- 692
             +  L   E  E        +  W  L+  G +EY+D EEEET MI+MT  DL  +R   
Sbjct: 654  HVNKLLNAEYDEFSDEPDTLNYSWSSLLNDGVVEYVDAEEEETIMIAMTPEDLEASRSSL 713

Query: 693  --------------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
                                + P  + ++T+THCEIHPS+ILGV ASIIPFPDHNQSPRN
Sbjct: 714  SETQQKDLQLEEQESDPAKRIKPTFSGSNTFTHCEIHPSMILGVAASIIPFPDHNQSPRN 773

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAI
Sbjct: 774  TYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAI 833

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
            ACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++H
Sbjct: 834  ACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKH 893

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 910
            G+Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G
Sbjct: 894  GTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESG 953

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ 
Sbjct: 954  IVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVV 1013

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVTV+ ISK L + GYQ R
Sbjct: 1014 PDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTVEAISKLLREHGYQSR 1073

Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
            GFE MYNGHTG++L A IF GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGG
Sbjct: 1074 GFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGG 1133

Query: 1091 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKN 1149
            LRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKN
Sbjct: 1134 LRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKN 1193

Query: 1150 KTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            KT+I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1194 KTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1225


>gi|308487676|ref|XP_003106033.1| CRE-RPB-2 protein [Caenorhabditis remanei]
 gi|308254607|gb|EFO98559.1| CRE-RPB-2 protein [Caenorhabditis remanei]
          Length = 1207

 Score = 1555 bits (4027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 757/1214 (62%), Positives = 915/1214 (75%), Gaps = 34/1214 (2%)

Query: 1    MMEDDYDYEEQHQQEE-EDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQN 55
            M E+D D E    + +  DE +EI+    QE  W VISAYF+EKGLVRQQLDSFDEF+Q 
Sbjct: 8    MFEEDDDMENVPMEGDYNDETDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQM 67

Query: 56   TMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPK 115
             +Q IV++S  +E++ E+QH      + A+  + + F QIYLSKP   E DG    + P 
Sbjct: 68   NVQRIVEDSPPVELQSENQHLGNDMENPAK--FSLKFNQIYLSKPTHWEKDGAPMPMMPN 125

Query: 116  AARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 175
             ARLRNLTY++PLYVD+TK V +     E+V E     KVF+GKVP+MLRSSYC L   +
Sbjct: 126  EARLRNLTYASPLYVDITKVVTRDDSVNEKVYE-----KVFVGKVPVMLRSSYCMLSNMT 180

Query: 176  EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE 235
            ++DLTEL ECP D GGYF+INGSEKVLIAQEKM+TN VYVF  +   KYA+  E RS  E
Sbjct: 181  DRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKTECRSCLE 239

Query: 236  SQNRPPSTMFVRMLSRTSAKGGSS--GQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293
            + +RP STM+V ML+R    G  +  GQ I   LPYI+ EIPI+IVFRALGFV+D+DIL 
Sbjct: 240  NSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILG 299

Query: 294  HICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKE 353
            HI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVTR++RIKYA+EILQKE
Sbjct: 300  HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREILQKE 359

Query: 354  MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413
            +LPHVG  + CETKKA++ GY++HRLLL ALGRR  DDRDH GNKRLDLAGPLL  LFR 
Sbjct: 360  LLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRA 419

Query: 414  LFRKLTRD--------VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QAN 464
            LFR L ++        +R   QK ++   D  L   +K  TIT GL YSLATGNWG Q  
Sbjct: 420  LFRNLLKEKMITSCIQMRMTAQKYINKNDDFALDVCVKTSTITRGLAYSLATGNWGDQKK 479

Query: 465  AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 524
            A  +RAGVSQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQ
Sbjct: 480  AHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQ 539

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            A GLVKNLALM YI+VGS   PILEFLEEW  EN EE+SP+ I  ATKIFVNG WVGIHR
Sbjct: 540  AVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWVGIHR 599

Query: 585  DPEMLVKTLRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 643
            +P+ L+ TL++LRR++D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L ++KR
Sbjct: 600  EPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVEDQKLALRKR 659

Query: 644  DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 703
             I  L+  +      W DLV  G +E ID+ EEET+MI+M   DL          Y DT+
Sbjct: 660  HIDQLKDIDEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDLRSG------VYCDTH 713

Query: 704  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            THCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYY
Sbjct: 714  THCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYY 773

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPLVTTR+ME+L F +LPAGINAIVAI  YSGYNQEDSVIMN S+IDRG FRS+F+RS
Sbjct: 774  PQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRS 833

Query: 824  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT-- 881
            YRD E  +    +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   
Sbjct: 834  YRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVAL 893

Query: 882  PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 941
            P   D+      +Y +RD S  LR SETG+VDQV+L+ N DG +FVK+R+RSVR+PQIGD
Sbjct: 894  PDIDDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGD 953

Query: 942  KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1001
            KF+SRHGQKGT+G+ Y QEDMP+T EG+TPDII+NPHA+PSRMTIG LIEC+ GK++A+ 
Sbjct: 954  KFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANK 1013

Query: 1002 GKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            G+ GDATPF D V V  IS  L + GY +RG E MYNGHTG++LT  IF GPTYYQRLKH
Sbjct: 1014 GEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKH 1073

Query: 1061 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDA 1120
            MVDDKIHSR RGP+Q++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD 
Sbjct: 1074 MVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDP 1133

Query: 1121 YRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            Y V+VC +CGLI +ANL+ NSFEC+ C+NKT +  V IPYACKLLFQELM+M+IAPR++ 
Sbjct: 1134 YHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMV 1193

Query: 1181 KEDTKQSKDHKKKG 1194
            K    +   H+ + 
Sbjct: 1194 KPQQPKRAKHQTEA 1207


>gi|426201159|gb|EKV51082.1| hypothetical protein AGABI2DRAFT_113824 [Agaricus bisporus var.
            bisporus H97]
          Length = 1183

 Score = 1552 bits (4019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/1177 (63%), Positives = 917/1177 (77%), Gaps = 40/1177 (3%)

Query: 3    EDDYDYEE-QHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            ++ Y+YE+  +  E+ED  EEITQED W VIS++FE+KGLVRQQLDSFDEF+QNTMQE+V
Sbjct: 11   QETYEYEDPNYGVEDEDSYEEITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELV 70

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            DE++D+ +    QH  G ++D     Y+I FGQIYLS+P +TE+DG    +FP+ ARLRN
Sbjct: 71   DENSDLILDQADQHT-GHETDMTRR-YEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRN 128

Query: 122  LTYSAPLYVDVTKRVIKKGHD----GEEVTETQ------DFTKVFIGKVPIMLRSSYCTL 171
            LTYSAPLY+++ KRV+    D    GE   E +      D TKV+IGKVPIMLRS++C L
Sbjct: 129  LTYSAPLYIEMRKRVLVGREDPDTAGEIAWEAEKEDHPDDATKVWIGKVPIMLRSTFCIL 188

Query: 172  YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 231
                ++DL +L ECPYD GGYFIINGSEKVLIAQE+M+TNHVYVF K QP+   ++AE+R
Sbjct: 189  RGLQDQDLYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIR 248

Query: 232  SMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 291
            S  E   +  S   V+M  R   +  S G  ++AT+PYI+ +IPI +VFR LG ++D+DI
Sbjct: 249  SAVEKGGKTISQFQVKMFHRNQER--SLGNVMKATIPYIKVDIPIWVVFRGLGVISDRDI 306

Query: 292  LEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQ 351
            LEHICYD QD QM+E+L+P +++ FVIQ+++VALD+IG RG T G++R++RI+YA+EILQ
Sbjct: 307  LEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQ 366

Query: 352  KEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 411
            KEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LF
Sbjct: 367  KEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLF 426

Query: 412  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 470
            RMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++A
Sbjct: 427  RMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKA 486

Query: 471  GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 530
            GVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVK
Sbjct: 487  GVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVK 546

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590
            NLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  LV
Sbjct: 547  NLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTSP-CTKVFVNGVWMGVHRDPANLV 605

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
            KT+++LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIVE Q+LL+ KR I  L  
Sbjct: 606  KTIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNS 665

Query: 651  RESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEA--- 698
                E     W  L+  G IE +D EEEET MISMT  DL  +RL       H  +    
Sbjct: 666  GSDDEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGDFD 725

Query: 699  ---------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 749
                     +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAM KQAMGIY+TN
Sbjct: 726  PAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMAKQAMGIYLTN 785

Query: 750  YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 809
            +  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 786  FLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 845

Query: 810  SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 869
            SIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT 
Sbjct: 846  SIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTG 905

Query: 870  VSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 927
            V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +FV
Sbjct: 906  VRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFV 965

Query: 928  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
            KVRVR+ RIPQIGDKF+SRHGQKGTVG+TY QEDMP+T EGI PD+I+NPHAIPSRMTIG
Sbjct: 966  KVRVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIG 1025

Query: 988  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1047
             L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A 
Sbjct: 1026 HLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQ 1085

Query: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 1107
            I+LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMI+HG +
Sbjct: 1086 IYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIA 1145

Query: 1108 HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFEC 1144
             FLKERLF+ SDAYR+HVC+ CGL AIANLKK +FE 
Sbjct: 1146 GFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFEA 1182


>gi|344304446|gb|EGW34678.1| DNA-dependent RNA polymerase II [Spathaspora passalidarum NRRL
            Y-27907]
          Length = 1238

 Score = 1550 bits (4014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/1232 (61%), Positives = 934/1232 (75%), Gaps = 64/1232 (5%)

Query: 9    EEQHQQEEEDE--------EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            + QH  EEED+         + IT ED W VIS++F+EKGLV QQLDSFDEFI+ T+QE+
Sbjct: 4    QNQHLHEEEDDPYMYDDGDSQSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQEL 63

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            V E + + +   +QH    +SD     Y+I+FG+IY+SKP  TE DG T  +FP+ ARLR
Sbjct: 64   VWEDSHLILDQPAQHT--SESDHENRRYEITFGKIYISKPSQTEGDGTTHPMFPQEARLR 121

Query: 121  NLTYSAPLYVDVTKRVIKKGHDG----------EEVTETQD-FTKVFIGKVPIMLRSSYC 169
            NLTYS+PLYVD+TK+V K   +           EE  E +D  TKV++GKVPIMLRS +C
Sbjct: 122  NLTYSSPLYVDMTKKVFKSDDNKRKENNELDWIEEKVEDEDPRTKVYLGKVPIMLRSKFC 181

Query: 170  TLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAE 229
             L    E D  EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE
Sbjct: 182  MLRDLGEHDFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAE 241

Query: 230  VRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 289
            +RS  E  +R  S+M +++  R   + G S + I+ATLPYI+ +IPI+IVFRALG V D 
Sbjct: 242  IRSAIEKGSRLISSMQIKLYGRD--EKGVSARTIKATLPYIKEDIPIVIVFRALGVVPDG 299

Query: 290  DILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEI 349
            DILEHICYD  D QM+E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+I
Sbjct: 300  DILEHICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDI 358

Query: 350  LQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGG 409
            LQKE+LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  
Sbjct: 359  LQKELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLAN 418

Query: 410  LFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 468
            LFR+LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +
Sbjct: 419  LFRILFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSS 478

Query: 469  RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 528
            RAGVSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGL
Sbjct: 479  RAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 538

Query: 529  VKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEM 588
            VKNL+LM  I+VG+ + PIL FLEEWG E+ E+  P+  P +T++FVNG WVG HRDP  
Sbjct: 539  VKNLSLMTCISVGTPSEPILYFLEEWGMESLEDYVPSNSPDSTRVFVNGVWVGTHRDPVN 598

Query: 589  LVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIK 641
            LV T+R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++
Sbjct: 599  LVDTMRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDSESETKGDLKLQ 658

Query: 642  KRDIIALQQRESPEDGG-----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR---- 692
            K  ++ L   E  +  G     W  LV  G +EY+D EEEET MI+MT  DL  ++    
Sbjct: 659  KEHVLKLLNSEYDDYDGDEGYNWTSLVNDGIVEYVDAEEEETIMIAMTPEDLEASKNTLS 718

Query: 693  ------LHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
                  +  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRN
Sbjct: 719  QTQIKAMQVEEQELDPAKRIKPVFSSATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRN 778

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI
Sbjct: 779  TYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAI 838

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
            ACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++H
Sbjct: 839  ACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKH 898

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETG 910
            G+Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G
Sbjct: 899  GTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESG 958

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI 
Sbjct: 959  IVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIV 1018

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PD+I+NPHAIPSRMT+  LIEC++ KV+A  G EGDA+PFTDVT + +S+ L + GYQ R
Sbjct: 1019 PDLIINPHAIPSRMTVAHLIECLLSKVSALSGLEGDASPFTDVTAEAVSRLLREHGYQSR 1078

Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
            GFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGG
Sbjct: 1079 GFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGG 1138

Query: 1091 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKN 1149
            LRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKN
Sbjct: 1139 LRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMSVIANLKKNQFECRSCKN 1198

Query: 1150 KTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            KT+I Q+HIPYA KLLFQELMAM I+PRM T+
Sbjct: 1199 KTNIYQIHIPYAAKLLFQELMAMNISPRMYTE 1230


>gi|150951109|ref|XP_001387366.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
 gi|149388327|gb|EAZ63343.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
          Length = 1232

 Score = 1550 bits (4014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1219 (61%), Positives = 930/1219 (76%), Gaps = 58/1219 (4%)

Query: 16   EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
            ++ + + IT ED W VIS++F+EKGLV QQLDSFDEFI+ T+QE+V E + + +   +QH
Sbjct: 11   DDGDAQSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQH 70

Query: 76   NPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 135
                + D     Y+I+FG+IY+SKPM TE DG T  +FP+ ARLRNLTYS+PLYVD+TK+
Sbjct: 71   T--SEDDHENRRYEITFGKIYISKPMQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKK 128

Query: 136  VIKKGHD----------GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
            V K   +           E+V + +   KVF+GKVPIMLRS +C L    E +  EL EC
Sbjct: 129  VFKSDDNRRKENELEWVEEKVEDEEPQQKVFLGKVPIMLRSKFCMLRDLGEHEFFELKEC 188

Query: 186  PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
            PYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  S+M 
Sbjct: 189  PYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQ 248

Query: 246  VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
            +++  R   + G+SG+ I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD  D QM+
Sbjct: 249  IKLYGRD--EKGTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQML 306

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  E
Sbjct: 307  EMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFE 365

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            ++KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  Y
Sbjct: 366  SRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNY 425

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+ST
Sbjct: 426  MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 485

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ +
Sbjct: 486  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPS 545

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PIL FLEEWG E  E+  P+  P +T++FVNG WVG HRDP  LV T+R LRRR D++ 
Sbjct: 546  EPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHRDPANLVDTMRSLRRRGDISP 605

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIAL-----QQRE 652
            EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +  L      + E
Sbjct: 606  EVSIIRDIREKEFKIFTDAGRVYRPLFIVDDEAESETKGDLKLQKEHVHNLLSSEYDEYE 665

Query: 653  SPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQA----------------- 691
             P++ G    W  L+  G +EY+D EEEET MI+MT  DL  +                 
Sbjct: 666  DPDNEGASYTWSSLINDGVVEYVDAEEEETIMIAMTPEDLEASKNAITETPDKSVLEEQE 725

Query: 692  -----RLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 745
                 R+ P   A   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+
Sbjct: 726  LDPAKRIKPTFSAATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGV 785

Query: 746  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 805
            ++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDSVI
Sbjct: 786  FLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSVI 845

Query: 806  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 865
            MNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  
Sbjct: 846  MNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIA 905

Query: 866  PGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADG 923
            PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG
Sbjct: 906  PGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 965

Query: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
             +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPSR
Sbjct: 966  AKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLIINPHAIPSR 1025

Query: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043
            MT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MYNGHTG++
Sbjct: 1026 MTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYNGHTGKK 1085

Query: 1044 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1103
            L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDCMIA
Sbjct: 1086 LMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIA 1145

Query: 1104 HGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYAC 1162
            HGA+ FLKERL + SDA+RVHVC  CGL+  IANLKKN FECR CKNKT+I Q+HIPYA 
Sbjct: 1146 HGAAGFLKERLMEASDAFRVHVCGMCGLMTVIANLKKNQFECRSCKNKTNIYQIHIPYAA 1205

Query: 1163 KLLFQELMAMAIAPRMLTK 1181
            KLLFQELMAM I+PRM T+
Sbjct: 1206 KLLFQELMAMNISPRMYTE 1224


>gi|402869721|ref|XP_003898896.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Papio anubis]
          Length = 1083

 Score = 1549 bits (4011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 746/1073 (69%), Positives = 877/1073 (81%), Gaps = 17/1073 (1%)

Query: 115  KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN 174
            K ARLRNLTYSAPLYVD+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   
Sbjct: 20   KHARLRNLTYSAPLYVDITKTVIK---EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGL 75

Query: 175  SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 234
            +++DL EL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  
Sbjct: 76   TDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCL 134

Query: 235  ESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 292
            E+ +RP ST++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DIL
Sbjct: 135  ENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDIL 194

Query: 293  EHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQK 352
            EHI YDF+D +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQK
Sbjct: 195  EHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQK 254

Query: 353  EMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 412
            EMLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR
Sbjct: 255  EMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFR 314

Query: 413  MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAG 471
             +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAG
Sbjct: 315  GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAG 374

Query: 472  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 531
            VSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKN
Sbjct: 375  VSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKN 434

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 591
            LALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ 
Sbjct: 435  LALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMN 494

Query: 592  TLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
            TLR+LRR++D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++
Sbjct: 495  TLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKE 554

Query: 651  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 710
            RE   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHP
Sbjct: 555  REY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHP 609

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVT
Sbjct: 610  SMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVT 669

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 670  TRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESK 729

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEA 888
             G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE 
Sbjct: 730  KGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDEL 789

Query: 889  QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            +    RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 790  ESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHG 849

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDAT
Sbjct: 850  QKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDAT 909

Query: 1009 PFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            PF D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIH
Sbjct: 910  PFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIH 969

Query: 1068 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 1127
            SR RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC 
Sbjct: 970  SRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCN 1029

Query: 1128 HCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1030 LCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1082


>gi|194386684|dbj|BAG61152.1| unnamed protein product [Homo sapiens]
          Length = 1083

 Score = 1547 bits (4005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 745/1073 (69%), Positives = 876/1073 (81%), Gaps = 17/1073 (1%)

Query: 115  KAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN 174
            K ARLRNLTYSAPLYVD+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   
Sbjct: 20   KHARLRNLTYSAPLYVDITKTVIK---EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGL 75

Query: 175  SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 234
            +++DL EL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  
Sbjct: 76   TDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCL 134

Query: 235  ESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 292
            E+ +RP ST++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DIL
Sbjct: 135  ENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDIL 194

Query: 293  EHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQK 352
            EHI YDF+D +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQK
Sbjct: 195  EHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQK 254

Query: 353  EMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 412
            EMLPHVG  DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR
Sbjct: 255  EMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFR 314

Query: 413  MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAG 471
             +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAG
Sbjct: 315  GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAG 374

Query: 472  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 531
            VSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKN
Sbjct: 375  VSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKN 434

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 591
            LALM YI+VGS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ 
Sbjct: 435  LALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMN 494

Query: 592  TLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
            TLR+LRR++D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++
Sbjct: 495  TLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKE 554

Query: 651  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 710
            RE   +  W DLVA G +EYIDT EEET M++MT +DL +     E AY  TYTHCEIHP
Sbjct: 555  REY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHP 609

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVT
Sbjct: 610  SMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVT 669

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K
Sbjct: 670  TRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESK 729

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEA 888
             G   +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVII KT   P ++DE 
Sbjct: 730  KGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIISKTVTLPENEDEL 789

Query: 889  QGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            +    RYT+RD S  LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 790  ESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHG 849

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDAT
Sbjct: 850  QKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDAT 909

Query: 1009 PFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            PF D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIH
Sbjct: 910  PFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIH 969

Query: 1068 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 1127
            SR RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC 
Sbjct: 970  SRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCN 1029

Query: 1128 HCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1030 LCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1082


>gi|294659491|ref|XP_002770594.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
 gi|199434003|emb|CAR65929.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
          Length = 1232

 Score = 1546 bits (4002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1231 (60%), Positives = 935/1231 (75%), Gaps = 64/1231 (5%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            +ED Y Y+        D+ E IT E+ W VIS++F+EKGLV QQLDSFDEFI+ T+QE+V
Sbjct: 7    VEDPYLYD--------DDSESITPENCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELV 58

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
             E + + +   +QH    + D     Y+I+FG+IY+SKP  TE DG T  +FP+ ARLRN
Sbjct: 59   WEDSHLILDQPAQHT--SEDDHENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRN 116

Query: 122  LTYSAPLYVDVTKRVIKKGHDG----------EEVTETQDFTKVFIGKVPIMLRSSYCTL 171
            LTYS+PLYVD+TK+V+K   +           E++ +    TKV++GKVPIMLRS +C L
Sbjct: 117  LTYSSPLYVDMTKKVLKSDDNNRVDNELEWVEEKIEDEGPQTKVYLGKVPIMLRSKFCML 176

Query: 172  YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 231
                E +  EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  +++AE+R
Sbjct: 177  RGLGEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHIAEIR 236

Query: 232  SMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 291
            S  E  +R  S+M +++  R     G+SG+ I+ATLPYI+ +IPI+IVFRALG V D DI
Sbjct: 237  SAIEKGSRLISSMQIKLYGRDDK--GTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDI 294

Query: 292  LEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQ 351
            LEHICYD  D QM+E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQ
Sbjct: 295  LEHICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQ 353

Query: 352  KEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 411
            KE+LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LF
Sbjct: 354  KELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLF 413

Query: 412  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 470
            R+LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RA
Sbjct: 414  RILFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRA 473

Query: 471  GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 530
            GVSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVK
Sbjct: 474  GVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 533

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590
            NL+LM  I+VG+++ PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV
Sbjct: 534  NLSLMSCISVGTSSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLV 593

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKR 643
             T+R LRRR D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L +KK 
Sbjct: 594  DTMRNLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDAESETKGELKLKKE 653

Query: 644  DIIALQQRESPEDG--------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR--- 692
            ++  L   E  + G         W  LV  G +EY+D EEEET MI+MT  DL  +R   
Sbjct: 654  NVHKLINAEYDDFGDDPDSLSYSWSSLVNDGIVEYVDAEEEETIMIAMTPEDLETSRSTL 713

Query: 693  -------LHPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
                   +  EE   D            T+THCEIHPS+ILGV ASIIPFPDHNQSPRNT
Sbjct: 714  SETEQKDMQLEEQEVDPAKRIKPTLGLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNT 773

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIA
Sbjct: 774  YQSAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIA 833

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ +RHG
Sbjct: 834  CYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPTRSDTLRLRHG 893

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGM 911
            +Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+
Sbjct: 894  TYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGI 953

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ P
Sbjct: 954  VDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGVVP 1013

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            D+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RG
Sbjct: 1014 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRG 1073

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
            FE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGL
Sbjct: 1074 FEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGL 1133

Query: 1092 RFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNK 1150
            RFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKNK
Sbjct: 1134 RFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNK 1193

Query: 1151 TDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            T+I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1194 TNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1224


>gi|5514652|emb|CAA29180.2| RNA polymerase [Drosophila melanogaster]
          Length = 1123

 Score = 1546 bits (4002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1134 (65%), Positives = 893/1134 (78%), Gaps = 22/1134 (1%)

Query: 56   TMQEIVDESADIEIRPESQHNPGQQSDFAETI--YKISFGQIYLSKPMMTESDGETATLF 113
            ++Q IV++S  IE++ E QH  G+     ET   + + F QIYLSKP   E DG  + + 
Sbjct: 2    SVQRIVEDSPAIELQAERQHTSGE----VETPPRFSLKFEQIYLSKPTHWEKDGSPSPMM 57

Query: 114  PKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQ 173
            P  ARLRNLTYSAPLYVD+TK    K  +G +  ETQ   K FIGK+PIMLRS+YC L Q
Sbjct: 58   PNEARLRNLTYSAPLYVDITK---TKNVEGLDPVETQH-QKTFIGKIPIMLRSTYCLLSQ 113

Query: 174  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233
             +++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF  +   KYA+  E+RS 
Sbjct: 114  LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKTEIRSC 172

Query: 234  AESQNRPPSTMFVRMLSRTSA--KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 291
             E  +RP ST++V M++R S   K  + GQ I A LPYI+ EIPI+IVFRALGFVAD+DI
Sbjct: 173  LEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDI 232

Query: 292  LEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQ 351
            LEHI YDF D +MME+++PSL+EAFV+Q Q VAL++IG RGA  GVT+DKRIKYAKEILQ
Sbjct: 233  LEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQ 292

Query: 352  KEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 411
            KEMLPHVG  DFCETKKAY+ GY++HRLLL +LGRR  DDRDHYGNKRLDLAGPLL  LF
Sbjct: 293  KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLF 352

Query: 412  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 470
            R LF+ L ++VR Y QK +D GKD NL+ AIK   IT GL+YSLATGNWG Q  A   RA
Sbjct: 353  RGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARA 412

Query: 471  GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 530
            GVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVK
Sbjct: 413  GVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVK 472

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590
            NLALM YI+VGS   PILEFLEEW  EN EEI+P+ I  ATKIFVNGCWVGIHRDPE L+
Sbjct: 473  NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 532

Query: 591  KTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 649
             TLR+LRR++D + +EV ++RDIR +E+RIYTD GR  RPL IVE   LL+KK  +  L+
Sbjct: 533  ATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLK 592

Query: 650  QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIH 709
            +R+   +  W  LVA G +EY+ T EEET MI+M+  DL Q +   + AY  TYTHCEIH
Sbjct: 593  ERDY-NNYSWQVLVASGVVEYMYTLEEETVMIAMSPYDLKQDK---DYAYCTTYTHCEIH 648

Query: 710  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
            P++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYP KPLV
Sbjct: 649  PAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLV 708

Query: 770  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 829
            TTR+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E 
Sbjct: 709  TTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSEN 768

Query: 830  KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDE 887
            K     +E+F +P R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P + DE
Sbjct: 769  KRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDE 828

Query: 888  AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
                  R+++RD S  LR+SETG+VDQV+LT N++G +F K+RVRSVRIPQIGDKF+SRH
Sbjct: 829  LDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 888

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGT G+ Y QEDM +T EG+ PDII+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDA
Sbjct: 889  GQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDA 948

Query: 1008 TPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            TPF D V V  IS  L + GY +RG E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKI
Sbjct: 949  TPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKI 1008

Query: 1067 HSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVC 1126
            HSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C
Sbjct: 1009 HSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHIC 1068

Query: 1127 EHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
              CGLIAIANL+ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 1069 NFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1122


>gi|406604825|emb|CCH43700.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
          Length = 1241

 Score = 1545 bits (4000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 750/1206 (62%), Positives = 921/1206 (76%), Gaps = 49/1206 (4%)

Query: 19   EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78
            E E+IT ED W VIS++F EKGLV QQLDSFDEFI  ++QE+V E + + +   +QH   
Sbjct: 35   ETEDITSEDCWTVISSFFREKGLVSQQLDSFDEFINTSIQELVWEDSTLILEQPAQHI-- 92

Query: 79   QQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK---- 134
             + D     Y+I FG+I+LS+P MTESDG T  +FP+ ARLRNLTY+APL+V++ K    
Sbjct: 93   TEDDNINRKYEIKFGKIFLSRPTMTESDGTTQQMFPQEARLRNLTYAAPLFVEMDKITYE 152

Query: 135  --------RVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
                     VIK   + E   +  D  KV+IG+VPIML+S YC L    E+++  L ECP
Sbjct: 153  TIDGTNDWTVIKDEVEDELDDDGNDNKKVYIGRVPIMLKSKYCLLRDLEEEEMYSLKECP 212

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            YD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  S+M +
Sbjct: 213  YDMGGYFVINGSEKVLIAQERSAANIVQVFKKSAPSPVSHVAEIRSALEKGSRLISSMQI 272

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            ++  R   KG  SG+ I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD  D QM E
Sbjct: 273  KLYGRDD-KG--SGRTIKATLPYIKQDIPIVIVFRALGIVPDGDILEHICYDQNDWQMFE 329

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+P +EE FVIQ+++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE LPH+   +  E+
Sbjct: 330  MLKPCVEEGFVIQDREVALDFIGRRGNALGIRREKRIQYAKDILQKEFLPHITQQEGFES 389

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+LF+KLTRD+  Y+
Sbjct: 390  RKAFFLGYMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDIYRYM 449

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            Q+ V+   D NL+ A+KA TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY+STL
Sbjct: 450  QRSVETDTDFNLKLAVKATTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 509

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS + 
Sbjct: 510  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSGSD 569

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PI+ FLEEWG E  E+  P   P AT+IFVNG W GIHRDP  L+ T+R LRRR +++ E
Sbjct: 570  PIIYFLEEWGMEPLEDYLPHQAPDATRIFVNGVWHGIHRDPAKLISTMRNLRRRGEISPE 629

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDIIALQQRE------- 652
            V ++RDIR KE +++TD GR  RPLF+VE       + L +K+  +  +   E       
Sbjct: 630  VSIIRDIREKEFKVFTDAGRVYRPLFVVEDNEETGAKELALKREHVQKIVDTEYGDYEEM 689

Query: 653  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--------------VQARLHP-EE 697
              E   W+ LV  G +EY+D EEEET MI+M+  DL                 RL P   
Sbjct: 690  EEEPFVWNSLVTNGIVEYVDAEEEETIMIAMSPEDLNPEKYGTQNYDDPDPNKRLKPGTN 749

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
             +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+
Sbjct: 750  KHAQTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTM 809

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FR
Sbjct: 810  ANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 869

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLFFRSY D+EK++G  V E F +P+RSNT+ ++HG+Y+KLDDDGL  PG RVSGED+II
Sbjct: 870  SLFFRSYMDQEKRVGMTVVEQFEKPNRSNTLRLKHGTYEKLDDDGLIAPGVRVSGEDIII 929

Query: 878  GKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKTTPI  D E  GQ + Y ++RD S  LR +E G+VDQVL+TTN +GL+FVKVR+R+ +
Sbjct: 930  GKTTPIQADSEELGQRTVYHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRMRTTK 989

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            +PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC++ 
Sbjct: 990  VPQIGDKFASRHGQKGTIGITYRREDMPFTREGIVPDLIINPHAIPSRMTVAHLIECLLS 1049

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KV+A  G EGDA+PFTDVTVD ISK L + GYQ RGFE MYNGHTG++L A IF GPTYY
Sbjct: 1050 KVSALSGLEGDASPFTDVTVDAISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYY 1109

Query: 1056 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLF 1115
            QRL+HMVDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERDCMIAHGA+ F+KERL 
Sbjct: 1110 QRLRHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFMKERLM 1169

Query: 1116 DQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1174
            + SDA+RVHVC  CGL++ IA LK N FECRGCKNK DI Q+HIPYA KLLFQELMAM I
Sbjct: 1170 EASDAFRVHVCGVCGLMSVIAKLKHNQFECRGCKNKIDIYQIHIPYAAKLLFQELMAMNI 1229

Query: 1175 APRMLT 1180
            APR+ T
Sbjct: 1230 APRLYT 1235


>gi|393218117|gb|EJD03605.1| DNA-dependent RNA polymerase II second largest subunit [Fomitiporia
            mediterranea MF3/22]
          Length = 1274

 Score = 1541 bits (3990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 741/1232 (60%), Positives = 928/1232 (75%), Gaps = 80/1232 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
             TQED W +ISA+F EKGLVRQQLDSFDEF++NT+QEI++E+AD+ +  + QH+ G + D
Sbjct: 41   FTQEDCWNIISAFFNEKGLVRQQLDSFDEFVKNTIQEIIEENADLILDQQDQHS-GSEKD 99

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
             A   Y I F QI +S P  +E+DG T  +FP+  R+RNLTY+AP+Y ++TK+ +    D
Sbjct: 100  AARR-YHIHFSQIIVSNPSFSEADGSTQAIFPQDCRIRNLTYAAPVYCEMTKQTLIGHED 158

Query: 143  GEEVT-----------ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
             + +T           E  +  K  IG++P+MLRS +C L + +E+DL  + ECPYD GG
Sbjct: 159  PDSMTGEMIWEPEHGGEALEHVKPMIGRIPMMLRSYFCNLRKFNERDLYRVNECPYDSGG 218

Query: 192  YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR 251
            YFIINGSEKVLIAQE+M+TNHVYVF K QP+  +++AE+RS  E   +  S   V+M  R
Sbjct: 219  YFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEQGGKTISQFQVKMYHR 278

Query: 252  TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPS 311
               +  +SG  ++AT+PYI+ +IPI +VFRALG ++D+DILEHIC+D  D+ M+E+L+P 
Sbjct: 279  GQER--ASGSVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICFDMNDSSMLEMLKPC 336

Query: 312  LEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYY 371
            +++ FVIQ+++VALD+IG RG   G+ RDKR++YA+EILQKEMLPH+   +  E+KKAY+
Sbjct: 337  IDDGFVIQDREVALDFIGNRGTATGLNRDKRLRYAQEILQKEMLPHISMAEGSESKKAYF 396

Query: 372  FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 431
            FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL GLFRMLFRKLT+DV  Y+QKCV+
Sbjct: 397  FGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLTGLFRMLFRKLTKDVYRYLQKCVE 456

Query: 432  NGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRR 490
              K+ N+  AIK +T+T+GLKYSLATGNWG Q  A  ++AGVSQVLNR TYASTLSHLRR
Sbjct: 457  THKEFNINMAIKTQTLTNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRR 516

Query: 491  LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 550
             N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P+++F
Sbjct: 517  CNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAVISVGSVSGPVIDF 576

Query: 551  LEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVR 610
            LEEWG E  EE + +     TK+FVNG W+G+ RDP  +V TLR LRR  D ++EV +VR
Sbjct: 577  LEEWGLETLEENTQST--NLTKVFVNGVWLGVCRDPLNMVNTLRTLRRMQDFDSEVSIVR 634

Query: 611  DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR----ESP------------ 654
            DIR +E+RIY+D GR  RPLFIVE  +L +K++ +  LQ++    E P            
Sbjct: 635  DIREREIRIYSDAGRVLRPLFIVEDHKLKLKRQHLRWLQEKWRIEERPYVPREERNKEEV 694

Query: 655  ---------EDG-----------------GWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
                     E+G                  W  L+  G IE +D EEEET MI MT +DL
Sbjct: 695  SEGETVADEEEGRPIMRDERRVKRKKKPFTWSSLIRDGVIELLDAEEEETVMICMTPDDL 754

Query: 689  VQARL-------------HPEE-----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 730
            +++RL             +P         A T+THCEIHPS+ILG+CASIIPFPDHNQSP
Sbjct: 755  LESRLLRRGLDPRAEADFNPAARLKPLPIAHTWTHCEIHPSMILGICASIIPFPDHNQSP 814

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMGIY+TN+  R DT+A +LYYPQKPL TTRAME+L FR+LPAG NAIV
Sbjct: 815  RNTYQSAMGKQAMGIYLTNFLMRQDTMANILYYPQKPLATTRAMEYLKFRELPAGQNAIV 874

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AI CYSGYNQEDSVIMNQSSIDRG FRSL++R+Y D+EK+ G ++ ++F +P R  T+ M
Sbjct: 875  AILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYMDQEKRSGAIIVDEFEKPTRDTTLRM 934

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 908
            +HG+YDKL+DDGL  PG  V G+D+IIGKT PI  D E  GQ +R +T+RD S  L+ +E
Sbjct: 935  KHGTYDKLEDDGLIAPGVNVRGDDIIIGKTAPIPPDSEELGQRTRGHTKRDISTPLKSTE 994

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
             G+VDQV++TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 995  QGIVDQVVVTTNAEGTKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEG 1054

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            ITPDII+NPHAIPSRMTIG L+EC++ K+A  +G EGDATPFTD+TVD++S  L + GYQ
Sbjct: 1055 ITPDIIINPHAIPSRMTIGHLVECLLSKLATIVGNEGDATPFTDLTVDSVSSVLREKGYQ 1114

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
             RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIH+R RGPVQILTRQP EGRSRD
Sbjct: 1115 SRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRD 1174

Query: 1089 GGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK 1148
            GGLRFGEMERDCMI+HG + FLKERLFD SDAYR+HVC+ CGL AIANLKK SFECR CK
Sbjct: 1175 GGLRFGEMERDCMISHGIAAFLKERLFDASDAYRLHVCDLCGLTAIANLKKQSFECRACK 1234

Query: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            NKT I Q++IPYA KLLFQEL AM IA R+ T
Sbjct: 1235 NKTSISQLYIPYAAKLLFQELQAMNIAARLYT 1266


>gi|402294651|gb|AFQ55279.1| DNA-directed RNA polymerase II [Peltigera membranacea]
          Length = 1255

 Score = 1539 bits (3985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 745/1238 (60%), Positives = 923/1238 (74%), Gaps = 76/1238 (6%)

Query: 16   EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
            +EDEE  IT ED W VIS++F+ KGLV QQLDSFDEF+  TMQE+V E+A + +    Q+
Sbjct: 13   DEDEEATITAEDCWTVISSFFDSKGLVSQQLDSFDEFVSTTMQELVAENAILTL---DQN 69

Query: 76   NPGQQSDFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT 133
             P   SD    I  Y+I FG + LS+P MTE DG T+ + P+ ARLRNLTYS+PLY+++T
Sbjct: 70   APPSDSDDPVLIRRYEIKFGTVLLSRPAMTEGDGSTSAMLPQEARLRNLTYSSPLYLEMT 129

Query: 134  KRVI-----------------------KKGHDG------EEVTETQDFTKVFIGKVPIML 164
            K+V                        + G D       E+  + QD +KVF+GK+PIML
Sbjct: 130  KKVSVARERVAVENADEDPNPDSDTQKRFGADANLDWVIEDGEDDQDPSKVFVGKLPIML 189

Query: 165  RSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKY 224
            +S YC L    E +L    ECPYDQGGYF+INGSEKVLIAQE+ + N V VFKK  P+  
Sbjct: 190  KSKYCILKDLGETELYNWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAPPSAT 249

Query: 225  AYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
             Y+AE+RS  E  +R  S+M +++ ++     G  GQ ++ATLPY++T++PI IVFR LG
Sbjct: 250  PYIAEIRSAVEKGSRLISSMQIKLFAKGENHKGGFGQTVKATLPYVKTDVPIGIVFRGLG 309

Query: 285  FVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIK 344
             V+D+DIL HICYD  DTQM+E L+P +EEAFVIQ+++VALD+IG RG +  ++R KR+K
Sbjct: 310  IVSDEDILNHICYDRNDTQMLEKLKPCIEEAFVIQDREVALDWIGSRGNSQSLSRPKRVK 369

Query: 345  YAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 404
            YA++I+QKE+LPH+   D  ETKKA++ GY++HR+L CALGRR  DDRDH+G KRLDLAG
Sbjct: 370  YARDIMQKELLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKRLDLAG 429

Query: 405  PLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QA 463
            PLL GLFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ T+T+GLKYSLATGNWG Q 
Sbjct: 430  PLLAGLFRMLFNKLTKDVFKYLQKCVENNREFNLTLGVKSTTLTNGLKYSLATGNWGDQK 489

Query: 464  NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 523
             AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEG
Sbjct: 490  KAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 549

Query: 524  QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 583
            QACGLVKNLALM YITVG+   PI++F+ +   E  EE  P   P ATK+FVNG WVG+H
Sbjct: 550  QACGLVKNLALMCYITVGTPCEPIIDFMNQRNMEMLEEYEPLRSPNATKVFVNGVWVGVH 609

Query: 584  RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ------- 636
            RDP  LV  ++ LRR   ++ EV +VRDIR +E +I+TD GR  RPLF+++         
Sbjct: 610  RDPAHLVSNVQDLRRGHIISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDTRSMNYG 669

Query: 637  RLLIKKRDIIALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTI 685
             L++ K  I  L++ +    G           GW  LV +G +EY+D EEEET MI MT 
Sbjct: 670  NLVLTKEHITRLEEDKEAAIGMDRDELEARQMGWDGLVNQGVVEYVDAEEEETVMIVMTP 729

Query: 686  NDLVQAR------LHPEEA--------------YADTYTHCEIHPSLILGVCASIIPFPD 725
             DL  +R        PE A               A T+THCEIHPS+ILG+CASIIPFPD
Sbjct: 730  GDLETSRQIQLGKAVPENAEDEPNKRVNAMSHRSAQTWTHCEIHPSMILGICASIIPFPD 789

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKP+ TTR+ME L FR+LPAG
Sbjct: 790  HNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPMATTRSMEFLKFRELPAG 849

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
             NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  + E F +P R+
Sbjct: 850  QNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSIVEQFEKPMRT 909

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSIS 903
            +T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT PI  D E  GQ ++ + +RD S  
Sbjct: 910  DTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAPIPPDSEELGQRTKMHIKRDASTP 969

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
            LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP
Sbjct: 970  LRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMP 1029

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023
            +T EG+ PD+I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFT+VTVD++SK L 
Sbjct: 1030 FTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTEVTVDSVSKILR 1089

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
              GYQ RGFE MYN HTG++L A +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP E
Sbjct: 1090 AHGYQSRGFEVMYNAHTGQKLVAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVE 1149

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSF 1142
            GR+RDGGLRFGEMERDCMIAHGAS FLKERLF+ SDA+RVH+C+ CGL+  +ANLKKNSF
Sbjct: 1150 GRARDGGLRFGEMERDCMIAHGASAFLKERLFEVSDAFRVHICDICGLMTPVANLKKNSF 1209

Query: 1143 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            ECR CKNKT I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1210 ECRPCKNKTRISQVHIPYAAKLLFQELASMNIAARMYT 1247


>gi|444313813|ref|XP_004177564.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
 gi|387510603|emb|CCH58045.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
          Length = 1236

 Score = 1539 bits (3984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1229 (60%), Positives = 924/1229 (75%), Gaps = 63/1229 (5%)

Query: 4    DDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            DDYD    +Q   EDE   IT ED+WAVISA+F EKGLV QQLDSF++F+  T+Q+I+ E
Sbjct: 13   DDYD---DNQYNFEDENSPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISE 69

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
             + + +   +QH    +SD     Y+ISFG+IY++KPM+ ESDG T  L+P+ ARLRNLT
Sbjct: 70   DSTLILEQLAQHT--TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLT 127

Query: 124  YSAPLYVDVTKRV----------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQ 173
            YS+ L+VDV KR           +K     EE  E  D  KVFIG++PIMLRS  C L  
Sbjct: 128  YSSGLFVDVKKRTHEAIDMPGRELKYSLIAEESEEDFDAGKVFIGRLPIMLRSKNCYLSD 187

Query: 174  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233
             +E DL +L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  +++AE+RS 
Sbjct: 188  ATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHIAEIRSA 247

Query: 234  AESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293
             E  +R  ST+ V++  R     GSS + I+ATLPYI+ +IPI+I+FRALG + D +ILE
Sbjct: 248  LEKGSRFISTLQVKLYGRE----GSSSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILE 303

Query: 294  HICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKE 353
            HICYD  D QM+E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YA++ILQKE
Sbjct: 304  HICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKE 363

Query: 354  MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 364  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 423

Query: 414  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 472
            LFRKLTRD+  Y+Q+ V+  KD N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGV
Sbjct: 424  LFRKLTRDIFRYMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 483

Query: 473  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 532
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 484  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 543

Query: 533  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 592
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++T
Sbjct: 544  SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 603

Query: 593  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 646
            LR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIV+       + L ++K  I 
Sbjct: 604  LRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVDDDSELGHKELKVRKGHIA 663

Query: 647  ALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 697
             L   E           ED  W  L+ +G +EYID EEEET +ISM   DL    + PEE
Sbjct: 664  KLLATEYQDIEGGYEDEEDYTWTSLLNEGLVEYIDAEEEETILISMAPEDL--EPISPEE 721

Query: 698  A-----------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
                                    +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTY
Sbjct: 722  IDEANNSEESAGHVDVAKRIKALHHAATFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 781

Query: 735  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
            QSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIAC
Sbjct: 782  QSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIAC 841

Query: 795  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
            YSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HGS
Sbjct: 842  YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLKMKHGS 901

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMV 912
            YDKLDDDGL  PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G++
Sbjct: 902  YDKLDDDGLISPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGII 961

Query: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            DQVL+TTN DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD
Sbjct: 962  DQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPD 1021

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032
            +I+NPHAIPSRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GY  RGF
Sbjct: 1022 LIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYHSRGF 1081

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTG++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLR
Sbjct: 1082 EIMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLR 1141

Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKT 1151
            FGEMERDCMIAHGA+ FLKERL + SDA+RVH+C  CGL+  IA L  N FEC+GC NK 
Sbjct: 1142 FGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKI 1201

Query: 1152 DIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            DI Q+ IPYA KLLFQELMAM I PR+ T
Sbjct: 1202 DIYQIKIPYAAKLLFQELMAMNITPRLYT 1230


>gi|402294653|gb|AFQ55280.1| DNA-directed RNA polymerase II [Peltigera malacea]
          Length = 1255

 Score = 1538 bits (3983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 746/1238 (60%), Positives = 923/1238 (74%), Gaps = 76/1238 (6%)

Query: 16   EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
            +EDEE  IT ED W VIS++F+ KGLV QQLDSFDEF+  TMQE+V E++ + +    Q+
Sbjct: 13   DEDEEATITAEDCWTVISSFFDSKGLVSQQLDSFDEFVSTTMQELVAENSVLTL---DQN 69

Query: 76   NPGQQSDFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT 133
             P   SD    I  Y+I FG + LS+P MTE DG T+T+ P+ ARLRNLTYS+PLY+++T
Sbjct: 70   APPSDSDDPILIRRYEIKFGTVLLSRPAMTEGDGSTSTMLPQEARLRNLTYSSPLYLEMT 129

Query: 134  KRVI-----------------------KKGHDG------EEVTETQDFTKVFIGKVPIML 164
            K+V                        + G D       E+  + QD +KVF+GK+PIML
Sbjct: 130  KKVSIARERVVFENADEDPNPDSDAQKRFGADANLDWVIEDGDDDQDPSKVFVGKLPIML 189

Query: 165  RSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKY 224
            +S YC L    E +L    ECPYDQGGYF+INGSEKVLIAQE+ + N V VFKK  P+  
Sbjct: 190  KSKYCILKDLGEAELYNWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAPPSAT 249

Query: 225  AYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
             YVAE+RS  E  +R  S+M +++ ++     G  GQ ++ATLPY++T++PI IVFRALG
Sbjct: 250  PYVAEIRSAVEKGSRLISSMQIKLFAKGENHKGGFGQTVKATLPYVKTDVPIGIVFRALG 309

Query: 285  FVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIK 344
             V+D+DIL HICYD  DTQM+E L+P +EEAFVIQ+++VALD+IG RG +  ++R KR+K
Sbjct: 310  IVSDEDILNHICYDRNDTQMLEKLKPCIEEAFVIQDREVALDWIGSRGNSQSLSRPKRVK 369

Query: 345  YAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 404
            YA++I+QKE+LPH+   D  ETKKA++ GY++HR+L CALGRR  DDRDH+G KRLDLAG
Sbjct: 370  YARDIMQKELLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKRLDLAG 429

Query: 405  PLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QA 463
            PLL GLFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ T+T+GLKYSLATGNWG Q 
Sbjct: 430  PLLAGLFRMLFNKLTKDVFKYLQKCVENNREFNLTLGVKSTTLTNGLKYSLATGNWGDQK 489

Query: 464  NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 523
             AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEG
Sbjct: 490  KAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 549

Query: 524  QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 583
            QACGLVKNLALM YITVG+   PI++F+ +   E  EE  P   P ATK+FVNG WVG+H
Sbjct: 550  QACGLVKNLALMCYITVGTPCEPIIDFMNQRNMEMLEEYEPLRSPNATKVFVNGVWVGVH 609

Query: 584  RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ------- 636
            RDP  LV  ++ LRR   ++ EV +VRDIR +E +I+TD GR  RPLF+++         
Sbjct: 610  RDPAHLVSNVQDLRRGHIISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDTRSMNYG 669

Query: 637  RLLIKKRDIIALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTI 685
             L++ K  I  L++ +    G           GW  LV +G +EY+D EEEET MI MT 
Sbjct: 670  NLVLTKEHIARLEEDKEAAIGMDRDELEARQMGWDGLVNQGVVEYVDAEEEETVMIVMTP 729

Query: 686  NDLVQAR------LHPEEA--------------YADTYTHCEIHPSLILGVCASIIPFPD 725
             DL  +R        P  A               A T+THCEIHPS+ILG+CASIIPFPD
Sbjct: 730  GDLETSRQIQLGKAVPGNAEDEPNKRVNAMSHRSAQTWTHCEIHPSMILGICASIIPFPD 789

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKP+ TTR+ME L FR+LPAG
Sbjct: 790  HNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPMATTRSMEFLKFRELPAG 849

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
             NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  + E F +P R+
Sbjct: 850  QNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSIVEQFEKPMRT 909

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSIS 903
            +T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT PI  D E  GQ ++ + +RD S  
Sbjct: 910  DTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAPIPPDSEELGQRTKLHVKRDASTP 969

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
            LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP
Sbjct: 970  LRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMP 1029

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023
            +T EG+ PD+I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFT+VTVD++SK L 
Sbjct: 1030 FTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTEVTVDSVSKILR 1089

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
              GYQ RGFE MYN HTG +L A +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP E
Sbjct: 1090 AHGYQSRGFEVMYNAHTGLKLVAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVE 1149

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSF 1142
            GR+RDGGLRFGEMERDCMIAHGAS FLKERLF+ SDA+RVH+C+ CGL+  +ANLKKNSF
Sbjct: 1150 GRARDGGLRFGEMERDCMIAHGASAFLKERLFEVSDAFRVHICDICGLMTPVANLKKNSF 1209

Query: 1143 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            ECR CKNKT I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1210 ECRPCKNKTRISQVHIPYAAKLLFQELASMNIAARMYT 1247


>gi|367008806|ref|XP_003678904.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
 gi|359746561|emb|CCE89693.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
          Length = 1222

 Score = 1538 bits (3981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1220 (61%), Positives = 928/1220 (76%), Gaps = 50/1220 (4%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            EDDY  E+ +  E  DE   IT ED+WAVISA+F EKGLV QQLDSF++F+  T+Q+I+ 
Sbjct: 5    EDDYYNEDPYGYE--DENSPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIIS 62

Query: 63   ESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
            E + + +   +QH    ++D     Y+ISFG+IY++KPM+ ESDG T  L+P+ ARLRNL
Sbjct: 63   EDSTLILEQLAQHT--TEADNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNL 120

Query: 123  TYSAPLYVDVTKRV----------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLY 172
            TYS+ L+VDV KR           +K     EE  +  +  KVFIG++PIMLRS  C L 
Sbjct: 121  TYSSGLFVDVKKRTYEAVDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLS 180

Query: 173  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 232
              +E DL +L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS
Sbjct: 181  DATELDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRS 240

Query: 233  MAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 292
              E  +R  ST+ V++  R     GSS + I+ATLPYI+ +IPI+I+FRALG + D +IL
Sbjct: 241  ALEKGSRFISTLQVKLYGRE----GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEIL 296

Query: 293  EHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQK 352
            EHICYD  D QM+E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YA++ILQK
Sbjct: 297  EHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQK 356

Query: 353  EMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 412
            E LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+
Sbjct: 357  EFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFK 416

Query: 413  MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAG 471
             LFRKLT+D+  Y+Q+ V+  KD N++ AI AKTITSGLKY+LATGNWG Q  A  +RAG
Sbjct: 417  TLFRKLTKDIFRYMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAG 476

Query: 472  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 531
            VSQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKN
Sbjct: 477  VSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKN 536

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 591
            L+LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++
Sbjct: 537  LSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLME 596

Query: 592  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI 645
            TLR LRR+ D+N EV +VRDIR KEL+I+TD GR  RPLFIVE       + L ++K  I
Sbjct: 597  TLRTLRRKGDINPEVSMVRDIREKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHI 656

Query: 646  IALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--VQ---- 690
              L   E           ED  W  L+ +G +EYID EEEET +ISM   DL  VQ    
Sbjct: 657  GKLMATEYQDIEGGFEDSEDYTWSSLLNEGLVEYIDAEEEETILISMQPEDLEPVQEAHE 716

Query: 691  -------ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
                   A+      +A T+THCEIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 717  FNEDDDLAKRIRATQHATTFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAM 776

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 777  GVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDS 836

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            +IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL
Sbjct: 837  MIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGL 896

Query: 864  APPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN 
Sbjct: 897  IAPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQ 956

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIP
Sbjct: 957  DGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIP 1016

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG
Sbjct: 1017 SRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTG 1076

Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
            ++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCM
Sbjct: 1077 KKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCM 1136

Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPY 1160
            IAHGA+ FLKERL + SDA+RVH+C  CGL++ IA L  N FEC+GC NK DI Q++IPY
Sbjct: 1137 IAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIYQINIPY 1196

Query: 1161 ACKLLFQELMAMAIAPRMLT 1180
            A KLLFQELMAM I PR+ T
Sbjct: 1197 AAKLLFQELMAMNITPRLYT 1216


>gi|398365417|ref|NP_014794.3| Rpb2p [Saccharomyces cerevisiae S288c]
 gi|2507349|sp|P08518.2|RPB2_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; AltName: Full=B150; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide
 gi|14278325|pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
 gi|14278336|pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
 gi|14278366|pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
 gi|20150714|pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
            The Inhibitor Alpha Amanitin
 gi|30749617|pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
 gi|30749738|pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
 gi|34810554|pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
 gi|46015416|pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
 gi|46015781|pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
 gi|56965912|pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
            Matched Nucleotide
 gi|56965924|pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
            Mismatched Nucleotide
 gi|56966108|pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
 gi|56966122|pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
 gi|56966132|pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
 gi|56966142|pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
 gi|56966152|pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
 gi|58177165|pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
 gi|61679445|pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
 gi|61679462|pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With Substrate
            Analogue Gmpcpp
 gi|61679503|pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
 gi|61679516|pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
 gi|83754244|pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
 gi|110590855|pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
 gi|122920062|pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
 gi|122920077|pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dgtp
 gi|122920092|pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
            Gmpcpp
 gi|122921031|pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            2'dutp
 gi|122921067|pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            Gmpcpp
 gi|122921083|pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dutp
 gi|122921098|pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
 gi|122921110|pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
            112006
 gi|134104675|pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
 gi|134104690|pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
 gi|134104711|pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104723|pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104735|pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
 gi|146387185|pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
 gi|160877774|pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
            Complex
 gi|161172228|pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
            Scaffold
 gi|161172241|pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
            Delta Virus-Derived Rna Stem Loop
 gi|190613463|pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
            Elongation Complex
 gi|194368735|pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
            With The Inhibitor Alpha-Amanitin
 gi|224983591|pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
 gi|239781917|pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
 gi|239781930|pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
 gi|239781943|pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
 gi|239781956|pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
            Mismatch
 gi|239781969|pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
 gi|239781983|pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
 gi|239781996|pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
 gi|239782009|pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
 gi|240104512|pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
            Active Site
 gi|254839442|pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839457|pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839472|pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
 gi|254839487|pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
            Mismatch And A Frayed Rna 3'-Uridine
 gi|254839502|pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
 gi|254839517|pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
 gi|254839532|pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
            Mismatch And A Frayed Rna 3'-Guanine
 gi|257471947|pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            D
 gi|257471962|pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            E
 gi|266618766|pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
 gi|269914553|pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
 gi|295982476|pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
 gi|295982489|pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
 gi|325053964|pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
 gi|325053979|pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
 gi|326634539|pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
            Subunit
 gi|343197457|pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
 gi|343197469|pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
 gi|343197481|pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
 gi|343197493|pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
 gi|343197505|pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
 gi|343197517|pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
 gi|343197529|pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 1)
 gi|343197541|pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 2)
 gi|343197553|pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Atp
 gi|343197565|pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Gtp
 gi|343197577|pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            Containing A 5br- U
 gi|343781198|pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
            Containing A 2[prime]-Iodo Atp
 gi|353251634|pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
            Vp16-Mediator-Pol Ii-Tfiif Assembly
 gi|357380837|pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid
 gi|359546291|pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid
 gi|359546309|pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid
 gi|359546326|pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546343|pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546360|pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid And Soaked With Gmpcpp
 gi|359546377|pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid
 gi|359546393|pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546410|pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|374977880|pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid
 gi|374977895|pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
 gi|380764980|pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
 gi|414145447|pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
 gi|414145460|pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
            Tfiib Complex
 gi|1293711|gb|AAC49637.1| Rpb2p polymerase [Saccharomyces cerevisiae]
 gi|1420379|emb|CAA99357.1| RPB2 [Saccharomyces cerevisiae]
 gi|151945769|gb|EDN64010.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
 gi|256272775|gb|EEU07746.1| Rpb2p [Saccharomyces cerevisiae JAY291]
 gi|259149634|emb|CAY86438.1| Rpb2p [Saccharomyces cerevisiae EC1118]
 gi|285815031|tpg|DAA10924.1| TPA: Rpb2p [Saccharomyces cerevisiae S288c]
 gi|349581308|dbj|GAA26466.1| K7_Rpb2p [Saccharomyces cerevisiae Kyokai no. 7]
 gi|392296478|gb|EIW07580.1| Rpb2p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1224

 Score = 1537 bits (3979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 743/1206 (61%), Positives = 921/1206 (76%), Gaps = 48/1206 (3%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            EDE   IT ED+WAVISA+F EKGLV QQLDSF++F+  T+Q+I+ E + + +   +QH 
Sbjct: 19   EDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHT 78

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
               +SD     Y+ISFG+IY++KPM+ ESDG T  L+P+ ARLRNLTYS+ L+VDV KR 
Sbjct: 79   --TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRT 136

Query: 137  ----------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
                      +K     EE  +  +  KVFIG++PIMLRS  C L + +E DL +L ECP
Sbjct: 137  YEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECP 196

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            +D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  ST+ V
Sbjct: 197  FDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQV 256

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            ++  R     GSS + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD  D QM+E
Sbjct: 257  KLYGRE----GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLE 312

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  E+
Sbjct: 313  MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 372

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LF+KLT+D+  Y+
Sbjct: 373  RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYM 432

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+STL
Sbjct: 433  QRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 492

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+   
Sbjct: 493  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 552

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N E
Sbjct: 553  PIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPE 612

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-DGG 658
            V ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I  L   E  + +GG
Sbjct: 613  VSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGG 672

Query: 659  --------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE------------- 697
                    W  L+ +G +EYID EEEE+ +I+M   DL  A  + E              
Sbjct: 673  FEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVS 732

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
             +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+
Sbjct: 733  HHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTM 792

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FR
Sbjct: 793  ANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 852

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSGEDVII
Sbjct: 853  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVII 912

Query: 878  GKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN DGL+FVKVRVR+ +
Sbjct: 913  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTK 972

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC++ 
Sbjct: 973  IPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1032

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A IF GPTYY
Sbjct: 1033 KVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYY 1092

Query: 1056 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLF 1115
            QRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL 
Sbjct: 1093 QRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLM 1152

Query: 1116 DQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1174
            + SDA+RVH+C  CGL+  IA L  N FEC+GC NK DI Q+HIPYA KLLFQELMAM I
Sbjct: 1153 EASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNI 1212

Query: 1175 APRMLT 1180
             PR+ T
Sbjct: 1213 TPRLYT 1218


>gi|50549809|ref|XP_502376.1| YALI0D03718p [Yarrowia lipolytica]
 gi|49648244|emb|CAG80564.1| YALI0D03718p [Yarrowia lipolytica CLIB122]
          Length = 1229

 Score = 1537 bits (3979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1217 (61%), Positives = 926/1217 (76%), Gaps = 63/1217 (5%)

Query: 19   EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78
            E+ EIT ED W VIS++F EKGLV QQLDSFDEFI+ T+QE+V E   + +   +QH   
Sbjct: 12   EDTEITAEDCWTVISSFFNEKGLVSQQLDSFDEFIETTIQELVWEDRTLILDQPAQHT-- 69

Query: 79   QQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
              +D     ++I+FG+IYLS+P MTE+DG T  ++P+ AR RNLTYS+PLYVD+ KRV+ 
Sbjct: 70   TPNDNQNKRFEITFGKIYLSRPTMTEADGSTHPMYPQEARARNLTYSSPLYVDMKKRVLF 129

Query: 139  KGHDGE-------------EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
               D               EV E    +KV+IGKVPIMLRS +C L    E DL EL EC
Sbjct: 130  SIDDPARPEADVVWNPIPGEVEEP--VSKVYIGKVPIMLRSKFCILRGLRENDLYELNEC 187

Query: 186  PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
            PYDQGGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  S+M 
Sbjct: 188  PYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAVEKGSRLISSMQ 247

Query: 246  VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
            ++M  R S KG  +   I+A LPY+R +IPI++VFRALG V D DILEHICYD  D QM+
Sbjct: 248  IKMFGR-SDKGPVT---IKAALPYVRADIPIVVVFRALGVVPDGDILEHICYDNNDWQML 303

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EEAFVIQ+++VALDYIG+RG+ VGV R++R++YA++ILQKE+LPH+   +  E
Sbjct: 304  EMLKPCIEEAFVIQDREVALDYIGRRGSAVGVNRERRVRYARDILQKELLPHITQEEGFE 363

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            T+KAY+ GY++HR+LL ALGR+  DDRDH+G KRLDLAGPL+ G+FRMLF+KLT+D+  Y
Sbjct: 364  TRKAYFLGYMVHRMLLVALGRKEPDDRDHFGKKRLDLAGPLMAGIFRMLFKKLTKDIYRY 423

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            + KCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGVSQVLNR T+AST
Sbjct: 424  MLKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFAST 483

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ +
Sbjct: 484  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPS 543

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
            +PI+ FL+EWG E  E+  P     +T++FVNG WVG+HRD   L   ++ LRR  D+ +
Sbjct: 544  FPIINFLDEWGMEPLEDYVPHTHTTSTRVFVNGVWVGVHRDATQLTDMIKSLRRMGDIES 603

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQR------ 651
            EV ++RDIR KE+RI+TD GR  RPLF+VE       K  L+++K  I  LQQ+      
Sbjct: 604  EVSIIRDIREKEIRIFTDAGRVYRPLFVVENNPDAERKGELVLQKDHIYQLQQQMAEQAE 663

Query: 652  ------ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLH-PEE-- 697
                  +  ++ GW+ LV  G IEYID EEEET MI+MT  DL     +QA +  PE+  
Sbjct: 664  TEGDEGKGDKNTGWNWLVDNGVIEYIDGEEEETVMIAMTPEDLEFSRQMQAGVEMPEDEL 723

Query: 698  -----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746
                        ++ T+THCEIHPS+ILG+ ASIIPFPDHNQSPRNTYQSAMGKQAMG++
Sbjct: 724  DPARRVKPAYNPHSHTWTHCEIHPSMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVF 783

Query: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806
            +TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSV+M
Sbjct: 784  LTNYDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVVM 843

Query: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 866
            NQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ M+HG+YDKLDDDGL  P
Sbjct: 844  NQSSIDRGLFRSLFFRSYMDQERRVGMSVVEEFEKPTRADTLRMKHGTYDKLDDDGLVCP 903

Query: 867  GTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGL 924
            G RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVLLTTN +GL
Sbjct: 904  GVRVSGEDIIIGKTAPIPPDAEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEGL 963

Query: 925  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 984
            RFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ EG+ PDII+NPHAIPSRM
Sbjct: 964  RFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGVVPDIIINPHAIPSRM 1023

Query: 985  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            T+  LIEC++ KV+   G EGDATPFTDVTVD ISK L   GYQ RGFE MY+GHTG+++
Sbjct: 1024 TVAHLIECLLSKVSCLSGLEGDATPFTDVTVDAISKLLRSHGYQSRGFEVMYHGHTGKKI 1083

Query: 1045 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1104
             A  FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGRSR+GGLRFGEMERDCMIAH
Sbjct: 1084 MAQCFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRSREGGLRFGEMERDCMIAH 1143

Query: 1105 GASHFLKERLFDQSDAYRVHVCEHCG-LIAIANLKKNSFECRGCKNKTDIVQVHIPYACK 1163
            GA+ FLKERL + SDA+R+HVC  CG +  IANLKKN FECR C+NKT I QV IPYA K
Sbjct: 1144 GAAAFLKERLMEASDAFRIHVCGVCGSMNVIANLKKNQFECRSCRNKTKIYQVQIPYAAK 1203

Query: 1164 LLFQELMAMAIAPRMLT 1180
            LLFQELMAM IAPR+ +
Sbjct: 1204 LLFQELMAMNIAPRLFS 1220


>gi|255717775|ref|XP_002555168.1| KLTH0G02970p [Lachancea thermotolerans]
 gi|238936552|emb|CAR24731.1| KLTH0G02970p [Lachancea thermotolerans CBS 6340]
          Length = 1220

 Score = 1536 bits (3978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 744/1221 (60%), Positives = 935/1221 (76%), Gaps = 58/1221 (4%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            ED Y YE        D+E  IT ED+W VISA+F EKGLV QQLDSF++FI  T+Q+ + 
Sbjct: 9    EDPYGYE--------DDEASITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDSIV 60

Query: 63   ESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
            E + + +   +QH    ++D     Y+ISFG+IYL+KP MTESDG +  ++P+ ARLRNL
Sbjct: 61   EDSTLILEQLAQHT--TEADNISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNL 118

Query: 123  TYSAPLYVDVTKRVIKK----GHDG-----EEVTETQDFTKVFIGKVPIMLRSSYCTLYQ 173
            TY++ L+V++ KR  +     G D      +E +E  D +K+FIG+VPIMLRS YC L +
Sbjct: 119  TYASGLFVEIRKRTYEAVDIPGRDLKYEVIDEESEMSDESKIFIGRVPIMLRSKYCLLDE 178

Query: 174  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233
             +E DL +L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  +++AE+RS 
Sbjct: 179  LTESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSA 238

Query: 234  AESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293
             E  +R  ST+ V++  R     GS+ + I+ATLPYI+ +IPI+I+FRALG + D +ILE
Sbjct: 239  LEKGSRFISTLQVKLYGRE----GSTNRTIKATLPYIKQDIPIVIIFRALGIIPDGEILE 294

Query: 294  HICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKE 353
            HICYD  D QM+ELL+P +EE FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE
Sbjct: 295  HICYDVNDWQMLELLKPCVEEGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKE 354

Query: 354  MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413
             LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ 
Sbjct: 355  FLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKT 414

Query: 414  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 472
            LFRKLTRD+  ++Q+ V+  KD NL+ A+KA TIT+GLKY+LATGNWG Q  A  +RAGV
Sbjct: 415  LFRKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMTSRAGV 474

Query: 473  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 532
            SQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 475  SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 534

Query: 533  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 592
            +LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV T
Sbjct: 535  SLMSCISVGTDPLPIITFLNEWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPAKLVDT 594

Query: 593  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDII 646
            +R+LRR+ DV +EV +VRDIR KEL+I+TD GR  RPLFIV++      + L ++K  I 
Sbjct: 595  IRKLRRKGDVTSEVSIVRDIREKELKIFTDAGRVYRPLFIVDENEETGVKELKLRKGHIR 654

Query: 647  ALQQRESPE-DGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQARL 693
             L   E  + +GG         W  L+ +G +EYID EEEET +I+M   DL   ++A  
Sbjct: 655  KLMMTEYQDIEGGFEEEDINYTWSSLLNEGLVEYIDAEEEETILIAMQHEDLDPTIEA-A 713

Query: 694  HPEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742
             PEE            ++ T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 714  DPEEELDPAKRIKAIHHSSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 773

Query: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802
            MG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQED
Sbjct: 774  MGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQED 833

Query: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862
            S+IMNQSSIDRG FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+YDKLDDDG
Sbjct: 834  SMIMNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPQRTNTLRMKHGTYDKLDDDG 893

Query: 863  LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTN 920
            L  PG RVSG+D+IIGKTTPI  D E  GQ + + ++RD S  LR +E G+VDQVL+TTN
Sbjct: 894  LIAPGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTN 953

Query: 921  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
             +GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHAI
Sbjct: 954  QEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAI 1013

Query: 981  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1040
            PSRMT+  LIEC++ KVAA  G EGDA+PFTD+TVD IS+ L + GYQ RGFE MYNGHT
Sbjct: 1014 PSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHT 1073

Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
            G++L A IF GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1074 GKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDC 1133

Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIP 1159
            MIAHGA+ FLKERL + SDA+RVH+C  CGL+  +A LK N FECRGCKNK DI Q+HIP
Sbjct: 1134 MIAHGAAAFLKERLMEASDAFRVHICGVCGLMTVVAKLKHNQFECRGCKNKIDIYQIHIP 1193

Query: 1160 YACKLLFQELMAMAIAPRMLT 1180
            YA KLLFQELMAM IAPR+ T
Sbjct: 1194 YAAKLLFQELMAMNIAPRLYT 1214


>gi|149244118|ref|XP_001526602.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146448996|gb|EDK43252.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 1238

 Score = 1536 bits (3978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1235 (60%), Positives = 933/1235 (75%), Gaps = 60/1235 (4%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            M  D + ++ +  + + E + IT ED W VIS++F+EKGLV QQLDSFDEFI++T+QE+V
Sbjct: 1    MSHDQEMDDPYMYDADVEAQNITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELV 60

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
             E + + +   +QH    + D     Y+I+FG+IY+SKP  TE DG T  +FP+ ARLRN
Sbjct: 61   WEDSHLILDQPAQHT--SEKDHDNKRYEINFGKIYISKPTQTEGDGTTHPMFPQEARLRN 118

Query: 122  LTYSAPLYVDVTKRVI----KKGHDGE------EVTETQDFTKVFIGKVPIMLRSSYCTL 171
            LTYS+P+YVD+TKRV      K  D E      +V   +  +KV++GKVPIMLRS +C L
Sbjct: 119  LTYSSPIYVDMTKRVFTSDDNKRIDNELEWHEIDVEGEKKTSKVYLGKVPIMLRSKFCML 178

Query: 172  YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 231
                E +  EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+R
Sbjct: 179  RDLGEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIR 238

Query: 232  SMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 291
            S  E  +R  S+M +++  R   + G+S + I+ATLPYI+ +IPI+IVFRALG V D DI
Sbjct: 239  SAIEKGSRLISSMQIKLYGRD--EKGTSARTIKATLPYIKEDIPIVIVFRALGIVPDGDI 296

Query: 292  LEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQ 351
            LEHICYD  D QM+E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQ
Sbjct: 297  LEHICYDQNDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQ 355

Query: 352  KEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 411
            KE+LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LF
Sbjct: 356  KELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLF 415

Query: 412  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 470
            R+LF+KLT+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RA
Sbjct: 416  RILFKKLTKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRA 475

Query: 471  GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 530
            GVSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVK
Sbjct: 476  GVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 535

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590
            NL+LM  I+VG+ + PIL FL +WG E  E+ +PA  P  T++FVNG WVG+HR+P  LV
Sbjct: 536  NLSLMSCISVGTPSDPILSFLRDWGLEPLEDYTPANSPDVTRVFVNGVWVGVHREPASLV 595

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKR 643
              +R LRR  D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K 
Sbjct: 596  DYMRDLRRNGDISPEVSLIRDIREKEFKIFTDAGRVYRPLFIVDDKPDSATKGDLKLQKE 655

Query: 644  DIIALQQR------ESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDL----- 688
             +  L +       E  ED      W  LV +G +EY+D EEEET MI+MT +DL     
Sbjct: 656  HVNQLLESSYEGYDEDDEDAAPKYTWSSLVKEGIVEYVDAEEEETIMIAMTPDDLEASKS 715

Query: 689  -----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 729
                  Q  L  EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQS
Sbjct: 716  SLTETQQQNLQMEEQELDPAKRIKPTNSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQS 775

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAI
Sbjct: 776  PRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAI 835

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAIACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ 
Sbjct: 836  VAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLR 895

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHS 907
            ++HG+Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +
Sbjct: 896  LKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRST 955

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E+G+VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T E
Sbjct: 956  ESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSE 1015

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            G+ PD+I+NPHAIPSRMT+  LIEC++ KV+A  G EGDA+PFTDVT + +SK L + GY
Sbjct: 1016 GVVPDLIINPHAIPSRMTVAHLIECLLSKVSALSGLEGDASPFTDVTAEAVSKLLREHGY 1075

Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1087
            Q RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSR
Sbjct: 1076 QSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSR 1135

Query: 1088 DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 1146
            DGGLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR 
Sbjct: 1136 DGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRS 1195

Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            CKNKT+I Q+HIPYA KLLFQELMAM I PR+ T+
Sbjct: 1196 CKNKTNIYQIHIPYAAKLLFQELMAMNITPRLYTE 1230


>gi|448519935|ref|XP_003868181.1| RNA polymerase II subunit B150 [Candida orthopsilosis Co 90-125]
 gi|380352520|emb|CCG22746.1| RNA polymerase II subunit B150 [Candida orthopsilosis]
          Length = 1228

 Score = 1536 bits (3977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 745/1225 (60%), Positives = 930/1225 (75%), Gaps = 59/1225 (4%)

Query: 9    EEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 68
            EEQ+     D+ + IT ED W VI+++F+EKGLV QQLDSFDEFI++T+QE++ E + + 
Sbjct: 3    EEQYDPYMYDDSQSITPEDCWTVITSFFQEKGLVSQQLDSFDEFIESTIQELIWEDSHLI 62

Query: 69   IRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 128
            +   +QH      D     Y+I+FG++Y+SKP  TE DG T  +FP+ ARLRNLTYSAPL
Sbjct: 63   LDQPAQHT--SDKDNKNKRYEITFGKMYISKPSQTEGDGTTHLMFPQEARLRNLTYSAPL 120

Query: 129  YVDVTKRVIKKGHDG---------EEVTETQDF-TKVFIGKVPIMLRSSYCTLYQNSEKD 178
            YVD++K+V +   +          E++ + +D  +KV++GKVPIM+RS +C L    E +
Sbjct: 121  YVDMSKKVFESDDNNRKDNELEWKEQIVQGEDSDSKVYMGKVPIMVRSKFCMLRDLGEHE 180

Query: 179  LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQN 238
            + EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +
Sbjct: 181  MYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGS 240

Query: 239  RPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYD 298
            R  S+M +++  R   +  SS + IRATLPYI+ +IPI+IVFRALG V D DILEHICYD
Sbjct: 241  RLISSMQIKLYGRD--EKSSSARTIRATLPYIKEDIPIVIVFRALGVVPDGDILEHICYD 298

Query: 299  FQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHV 358
              D QM+E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++
Sbjct: 299  ANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNI 357

Query: 359  GTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 418
               +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KL
Sbjct: 358  TQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKL 417

Query: 419  TRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLN 477
            T+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLN
Sbjct: 418  TKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLN 477

Query: 478  RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 537
            R TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  
Sbjct: 478  RYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSC 537

Query: 538  ITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLR 597
            I+VG+ + PI  FL +WG E  E+  P+  P AT++FVNG WVG+HR+P  LV  +R LR
Sbjct: 538  ISVGTPSEPISSFLRDWGLEPLEDYVPSNSPDATRVFVNGVWVGVHREPASLVDYMRDLR 597

Query: 598  RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQ 650
            R  D++ EV ++RDIR KEL+I+TD GR  RPLFIV+       K  L ++K  +  L  
Sbjct: 598  RNGDISPEVSIIRDIREKELKIFTDAGRVYRPLFIVDDNPDSETKGDLKLRKEHVNQLL- 656

Query: 651  RESPEDG-------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARL 693
             ES  DG        W  LV +G +EY+D EEEET MI+MT +DL           Q  L
Sbjct: 657  -ESSYDGLDDEPTYTWSSLVREGIVEYVDAEEEETIMIAMTPDDLEASKSNLTETQQQDL 715

Query: 694  HPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
              EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMG
Sbjct: 716  QMEEQELDPAKRIKPTGSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMG 775

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYN
Sbjct: 776  KQAMGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYN 835

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLD
Sbjct: 836  QEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLD 895

Query: 860  DDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLL 917
            DDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLL
Sbjct: 896  DDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLL 955

Query: 918  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
            TTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NP
Sbjct: 956  TTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINP 1015

Query: 978  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1037
            HAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGFE MYN
Sbjct: 1016 HAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRGFEVMYN 1075

Query: 1038 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1097
            GHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEME
Sbjct: 1076 GHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEME 1135

Query: 1098 RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQV 1156
            RDCMIAHGA+ FLKERL + SDA+RVHVC  CGL+  IANLKKN FECR CKNKT+I Q+
Sbjct: 1136 RDCMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMTVIANLKKNQFECRSCKNKTNIYQI 1195

Query: 1157 HIPYACKLLFQELMAMAIAPRMLTK 1181
            HIPYA KLLFQELMAM I PR+ T+
Sbjct: 1196 HIPYAAKLLFQELMAMNITPRLYTE 1220


>gi|365984393|ref|XP_003669029.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
 gi|343767797|emb|CCD23786.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
          Length = 1227

 Score = 1536 bits (3976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 745/1224 (60%), Positives = 926/1224 (75%), Gaps = 59/1224 (4%)

Query: 10   EQHQQEE---------EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            EQ Q+EE         ED    IT ED+WAVIS++F EKGLV QQLDSF++F+  T+Q+I
Sbjct: 4    EQGQEEEYYDDEAYGFEDANAPITAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDI 63

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            + E + + +   +QH    +SD     Y+ISFG+IY++KPM+ ESDG T  L+P+ ARLR
Sbjct: 64   ISEDSTLILEQLAQHT--TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLR 121

Query: 121  NLTYSAPLYVDVTKRV----------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCT 170
            NLTYS+ L+VDV KR           +K     EE  +  +  KVFIG++PIMLRS  C 
Sbjct: 122  NLTYSSGLFVDVKKRTYEAVDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCY 181

Query: 171  LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 230
            L   +E DL +L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+
Sbjct: 182  LSDATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI 241

Query: 231  RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            RS  E  +R  ST+ V++  R     GSS + ++ATLPYI+ +IPI+I+FRALG + D +
Sbjct: 242  RSALEKGSRFISTLQVKLYGRE----GSSARTVKATLPYIKQDIPIVIIFRALGIIPDGE 297

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            ILEHICYD  D QM+E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+IL
Sbjct: 298  ILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDIL 357

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            QKE LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  L
Sbjct: 358  QKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQL 417

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            F+ LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +R
Sbjct: 418  FKTLFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSR 477

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLV
Sbjct: 478  AGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLV 537

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNL+LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L
Sbjct: 538  KNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARL 597

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKR 643
            + TLR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K 
Sbjct: 598  MDTLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKG 657

Query: 644  DIIALQQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 694
             I  L   E  + +GG        W  L+ +G +EYID EEEET +I+M   DL    ++
Sbjct: 658  HINKLMATEYQDIEGGFEDVEEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPPAVN 717

Query: 695  PEEAYAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
             +E   D               T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMG
Sbjct: 718  EDEPMVDDLDPAKRIRAVQHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMG 777

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYN
Sbjct: 778  KQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYN 837

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDS+IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLD
Sbjct: 838  QEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLD 897

Query: 860  DDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLL 917
            DDGL  PG RVSGEDVIIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+
Sbjct: 898  DDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLI 957

Query: 918  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
            TTN DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NP
Sbjct: 958  TTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINP 1017

Query: 978  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1037
            HAIPSRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ IS+ L + GYQ RGFE MYN
Sbjct: 1018 HAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISRLLREHGYQSRGFEVMYN 1077

Query: 1038 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1097
            GHTG++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEME
Sbjct: 1078 GHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEME 1137

Query: 1098 RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQV 1156
            RDCMIAHGA+ FLKERL + SDA+RVHVC +CGL++ IA L  N FEC+GC NK DI Q+
Sbjct: 1138 RDCMIAHGAASFLKERLMEASDAFRVHVCGNCGLMSVIAKLNHNQFECKGCDNKIDIYQI 1197

Query: 1157 HIPYACKLLFQELMAMAIAPRMLT 1180
            HIPYA KLLFQELMAM I PR+ T
Sbjct: 1198 HIPYAAKLLFQELMAMNITPRLYT 1221


>gi|354544175|emb|CCE40898.1| hypothetical protein CPAR2_109360 [Candida parapsilosis]
          Length = 1228

 Score = 1535 bits (3975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 744/1225 (60%), Positives = 931/1225 (76%), Gaps = 59/1225 (4%)

Query: 9    EEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 68
            E+Q+     D+ + IT ED W VI+++F+EKGLV QQLDSFDEFI++T+QE++ E + + 
Sbjct: 3    EDQYDPYMYDDSQSITPEDCWTVITSFFQEKGLVSQQLDSFDEFIESTIQELIWEDSHLI 62

Query: 69   IRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 128
            +   +QH    + D     Y+I+FG++Y+SKP  TE DG T  +FP+ ARLRNLTYSAPL
Sbjct: 63   LDQPAQHT--SEKDSKNKRYEITFGKMYISKPSQTEGDGTTHPMFPQEARLRNLTYSAPL 120

Query: 129  YVDVTKRVIKKGHDG---------EEVTETQDF-TKVFIGKVPIMLRSSYCTLYQNSEKD 178
            YVD++K+V +   +          E++ + +D  ++V++GKVPIM+RS +C L    E +
Sbjct: 121  YVDMSKKVFESDDNNRVDNELEWKEQIVQGEDSDSQVYLGKVPIMVRSKFCMLRDLGEHE 180

Query: 179  LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQN 238
            + EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +
Sbjct: 181  MYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGS 240

Query: 239  RPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYD 298
            R  S M +++  R   +  SS + I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD
Sbjct: 241  RLISAMQIKLYGRD--EKSSSARTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYD 298

Query: 299  FQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHV 358
              D QM+E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++
Sbjct: 299  ANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNI 357

Query: 359  GTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 418
               +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KL
Sbjct: 358  TQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKL 417

Query: 419  TRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLN 477
            T+D+  Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLN
Sbjct: 418  TKDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLN 477

Query: 478  RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 537
            R TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  
Sbjct: 478  RYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSC 537

Query: 538  ITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLR 597
            I+VG+ + PI  FL +WG E  E+  P+  P AT++FVNG WVG+HR+P  LV  +R LR
Sbjct: 538  ISVGTPSEPISSFLRDWGLEPLEDYVPSNSPDATRVFVNGVWVGVHREPASLVDYMRDLR 597

Query: 598  RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQ 650
            R  D++ EV ++RDIR KEL+I+TD GR  RPLFIV+       K  L +KK  +  L  
Sbjct: 598  RNGDISPEVSIIRDIREKELKIFTDAGRVYRPLFIVDDNPDSETKGDLKLKKEHVNRLL- 656

Query: 651  RESPEDGG-------WHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARL 693
             ES  DG        W  LV +G +EY+D EEEET MI+MT +DL           Q  L
Sbjct: 657  -ESSYDGDEDEPSYTWSSLVREGIVEYVDAEEEETIMIAMTPDDLEASKSNLTETQQQDL 715

Query: 694  HPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
              EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMG
Sbjct: 716  QMEEQELDPAKRIKPTGSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMG 775

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYN
Sbjct: 776  KQAMGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYN 835

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDS+IMNQSSIDRGFFRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLD
Sbjct: 836  QEDSMIMNQSSIDRGFFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLD 895

Query: 860  DDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLL 917
            DDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLL
Sbjct: 896  DDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLL 955

Query: 918  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
            TTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NP
Sbjct: 956  TTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINP 1015

Query: 978  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1037
            HAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGFE MYN
Sbjct: 1016 HAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRGFEVMYN 1075

Query: 1038 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1097
            GHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEME
Sbjct: 1076 GHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEME 1135

Query: 1098 RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQV 1156
            RDCMIAHGA+ FLKERL + SDA+RVHVC  CGL+  IANLKKN FECR CKNKT+I Q+
Sbjct: 1136 RDCMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMTVIANLKKNQFECRSCKNKTNIYQI 1195

Query: 1157 HIPYACKLLFQELMAMAIAPRMLTK 1181
            HIPYA KLLFQELMAM I PR+ T+
Sbjct: 1196 HIPYAAKLLFQELMAMNITPRLYTE 1220


>gi|190346609|gb|EDK38735.2| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1291

 Score = 1535 bits (3974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1222 (61%), Positives = 928/1222 (75%), Gaps = 62/1222 (5%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            +D+   IT ED W VIS++F+EKGLV QQLDSFDEFI++T+QE+V E + + +   +QH 
Sbjct: 67   DDDSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHT 126

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
               + D     Y+I+FG+IY+SKP  TE DG T  +FP+ ARLRNLTYS+PLYVD+TKRV
Sbjct: 127  --SEEDHENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRV 184

Query: 137  IKKGHDG----------EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            +K   +           EE+ + +  TKV++GKVPIMLRS +C L    E +  EL ECP
Sbjct: 185  LKSDDNAGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECP 244

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            YD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  S+M +
Sbjct: 245  YDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQI 304

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            ++  R   +  +S + I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD  D QM+E
Sbjct: 305  KLYGR--EEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLE 362

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+P +EE FVIQ ++VALD+IG+RGA +G+ R+KRI+YAK+ILQKE+LP++   +  ET
Sbjct: 363  MLKPCVEEGFVIQEREVALDFIGRRGA-LGIKREKRIQYAKDILQKELLPNITQDEGFET 421

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLT+D+  Y+
Sbjct: 422  RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYM 481

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            Q+CV+N K  NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+STL
Sbjct: 482  QRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 541

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ + 
Sbjct: 542  SHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSE 601

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR D++ E
Sbjct: 602  PILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPE 661

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG- 657
            V ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  I  L   E  E+  
Sbjct: 662  VSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYA 721

Query: 658  -----------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPE 696
                       GW  LV  G +EY+D EEEET MI+MT  DL           Q  L  E
Sbjct: 722  TNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLE 781

Query: 697  EAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742
            E   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 782  EQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 841

Query: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802
            MG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQED
Sbjct: 842  MGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQED 901

Query: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862
            S+IMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDG
Sbjct: 902  SMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDG 961

Query: 863  LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTN 920
            L  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN
Sbjct: 962  LIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTN 1021

Query: 921  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
             DG +FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T +GI PD+I+NPHAI
Sbjct: 1022 GDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAI 1081

Query: 981  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1040
            PSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MY+GHT
Sbjct: 1082 PSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYHGHT 1141

Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
            G++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1142 GKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDC 1201

Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIP 1159
            MIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKNKT+I Q+HIP
Sbjct: 1202 MIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHIP 1261

Query: 1160 YACKLLFQELMAMAIAPRMLTK 1181
            YA KLLFQELMAM I+PR+ T+
Sbjct: 1262 YAAKLLFQELMAMNISPRLYTE 1283


>gi|223590257|sp|A5DHT2.3|RPB2_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
          Length = 1236

 Score = 1534 bits (3972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1222 (61%), Positives = 928/1222 (75%), Gaps = 62/1222 (5%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            +D+   IT ED W VIS++F+EKGLV QQLDSFDEFI++T+QE+V E + + +   +QH 
Sbjct: 12   DDDSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHT 71

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
               + D     Y+I+FG+IY+SKP  TE DG T  +FP+ ARLRNLTYS+PLYVD+TKRV
Sbjct: 72   --SEEDHENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRV 129

Query: 137  IKKGHDG----------EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            +K   +           EE+ + +  TKV++GKVPIMLRS +C L    E +  EL ECP
Sbjct: 130  LKSDDNAGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECP 189

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            YD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  S+M +
Sbjct: 190  YDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQI 249

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            ++  R   +  +S + I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD  D QM+E
Sbjct: 250  KLYGR--EEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLE 307

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+P +EE FVIQ ++VALD+IG+RGA +G+ R+KRI+YAK+ILQKE+LP++   +  ET
Sbjct: 308  MLKPCVEEGFVIQEREVALDFIGRRGA-LGIKREKRIQYAKDILQKELLPNITQDEGFET 366

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLT+D+  Y+
Sbjct: 367  RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYM 426

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            Q+CV+N K  NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+STL
Sbjct: 427  QRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 486

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ + 
Sbjct: 487  SHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSE 546

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR D++ E
Sbjct: 547  PILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPE 606

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG- 657
            V ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  I  L   E  E+  
Sbjct: 607  VSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYA 666

Query: 658  -----------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPE 696
                       GW  LV  G +EY+D EEEET MI+MT  DL           Q  L  E
Sbjct: 667  TNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLE 726

Query: 697  EAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742
            E   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 727  EQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 786

Query: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802
            MG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQED
Sbjct: 787  MGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQED 846

Query: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862
            S+IMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDG
Sbjct: 847  SMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDG 906

Query: 863  LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTN 920
            L  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN
Sbjct: 907  LIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTN 966

Query: 921  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
             DG +FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T +GI PD+I+NPHAI
Sbjct: 967  GDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAI 1026

Query: 981  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1040
            PSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MY+GHT
Sbjct: 1027 PSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYHGHT 1086

Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
            G++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1087 GKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDC 1146

Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIP 1159
            MIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKNKT+I Q+HIP
Sbjct: 1147 MIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHIP 1206

Query: 1160 YACKLLFQELMAMAIAPRMLTK 1181
            YA KLLFQELMAM I+PR+ T+
Sbjct: 1207 YAAKLLFQELMAMNISPRLYTE 1228


>gi|146418277|ref|XP_001485104.1| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1291

 Score = 1534 bits (3971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1222 (61%), Positives = 928/1222 (75%), Gaps = 62/1222 (5%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            +D+   IT ED W VIS++F+EKGLV QQLDSFDEFI++T+QE+V E + + +   +QH 
Sbjct: 67   DDDSLSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHT 126

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
               + D     Y+I+FG+IY+SKP  TE DG T  +FP+ ARLRNLTYS+PLYVD+TKRV
Sbjct: 127  --SEEDHENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRV 184

Query: 137  IKKGHDG----------EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
            +K   +           EE+ + +  TKV++GKVPIMLRS +C L    E +  EL ECP
Sbjct: 185  LKSDDNAGNEHELEWIEEEIKDEEPLTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECP 244

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            YD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  S+M +
Sbjct: 245  YDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQI 304

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            ++  R   +  +S + I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD  D QM+E
Sbjct: 305  KLYGR--EEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLE 362

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+P +EE FVIQ ++VALD+IG+RGA +G+ R+KRI+YAK+ILQKE+LP++   +  ET
Sbjct: 363  MLKPCVEEGFVIQEREVALDFIGRRGA-LGIKREKRIQYAKDILQKELLPNITQDEGFET 421

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLT+D+  Y+
Sbjct: 422  RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYM 481

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            Q+CV+N K  NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+STL
Sbjct: 482  QRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 541

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ + 
Sbjct: 542  SHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSE 601

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR D++ E
Sbjct: 602  PILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPE 661

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG- 657
            V ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  I  L   E  E+  
Sbjct: 662  VSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYA 721

Query: 658  -----------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPE 696
                       GW  LV  G +EY+D EEEET MI+MT  DL           Q  L  E
Sbjct: 722  TNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLE 781

Query: 697  EAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742
            E   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 782  EQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 841

Query: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802
            MG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQED
Sbjct: 842  MGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQED 901

Query: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862
            S+IMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDG
Sbjct: 902  SMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPLRSDTLRLKHGTYEKLDDDG 961

Query: 863  LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTN 920
            L  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN
Sbjct: 962  LIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTN 1021

Query: 921  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
             DG +FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T +GI PD+I+NPHAI
Sbjct: 1022 GDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAI 1081

Query: 981  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1040
            PSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MY+GHT
Sbjct: 1082 PSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYHGHT 1141

Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
            G++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1142 GKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDC 1201

Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIP 1159
            MIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKNKT+I Q+HIP
Sbjct: 1202 MIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHIP 1261

Query: 1160 YACKLLFQELMAMAIAPRMLTK 1181
            YA KLLFQELMAM I+PR+ T+
Sbjct: 1262 YAAKLLFQELMAMNISPRLYTE 1283


>gi|50293059|ref|XP_448959.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51701949|sp|Q6FLD5.1|RPB2_CANGA RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|49528272|emb|CAG61929.1| unnamed protein product [Candida glabrata]
          Length = 1223

 Score = 1534 bits (3971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 745/1223 (60%), Positives = 929/1223 (75%), Gaps = 49/1223 (4%)

Query: 1    MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            M  D+ DY ++     E+E   IT ED WAVISA+F EKGLV QQLDSF++F+  T+Q+I
Sbjct: 1    MSADNEDYYDEDPYGFEEENAPITAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDI 60

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            + E + + +   +QH   Q  D     Y+ISFG+IY++KPM+ ESDG T  L+P+ ARLR
Sbjct: 61   ISEDSTLILEQLAQHTTEQ--DNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLR 118

Query: 121  NLTYSAPLYVDVTKRVIKK----GHD------GEEVTETQDFTKVFIGKVPIMLRSSYCT 170
            NLTYS+ L+VDVTKR  +     G D       EE  E  +  KVFIG++PIMLRS  C 
Sbjct: 119  NLTYSSGLFVDVTKRTYEAVDVPGRDLNYQLIAEESEEDSESGKVFIGRLPIMLRSKNCY 178

Query: 171  LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 230
            L   +E DL +L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+
Sbjct: 179  LSDATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI 238

Query: 231  RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            RS  E  +R  ST+ V++  R S    SS + I+ATLPYI+ +IPI+I+FRALG + D +
Sbjct: 239  RSALEKGSRFISTLQVKLYGRES----SSARTIKATLPYIKQDIPIVIIFRALGIIPDGE 294

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            ILEHICYD  D QM+E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+IL
Sbjct: 295  ILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDIL 354

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            QKE LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  L
Sbjct: 355  QKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQL 414

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            F+ LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +R
Sbjct: 415  FKTLFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSR 474

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLV
Sbjct: 475  AGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLV 534

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNL+LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L
Sbjct: 535  KNLSLMSCISVGADPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARL 594

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKR 643
            ++TLR LRR+ D+N EV ++RDIR +EL+I+TD GR  RPLFIVE      ++ L ++K 
Sbjct: 595  METLRTLRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKG 654

Query: 644  DIIALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 694
             +  L   E           ED  W  L+ +G +EYID EEEE+ +I+M   DL    + 
Sbjct: 655  HVAKLMATEYQDIEGGFEDAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVE 714

Query: 695  ---PEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 740
               P+E            +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 715  QDIPKENVDLAKRIKVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGK 774

Query: 741  QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 800
            QAMG+++TNY FRMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQ
Sbjct: 775  QAMGVFLTNYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQ 834

Query: 801  EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 860
            EDS+IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLD+
Sbjct: 835  EDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDE 894

Query: 861  DGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLT 918
            DGL  PG RVSGED+IIGKTTPI+ DE + GQ + Y ++RD S  LR +E G+VDQVL+T
Sbjct: 895  DGLIAPGVRVSGEDIIIGKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLIT 954

Query: 919  TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 978
            TN DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPH
Sbjct: 955  TNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPH 1014

Query: 979  AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1038
            AIPSRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNG
Sbjct: 1015 AIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNG 1074

Query: 1039 HTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1098
            HTG++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMER
Sbjct: 1075 HTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMER 1134

Query: 1099 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVH 1157
            DCMIAHGA+ FLKERL + SDA+RVH+C  CGL++ IA L  N FEC+GC NK DI Q+H
Sbjct: 1135 DCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIYQIH 1194

Query: 1158 IPYACKLLFQELMAMAIAPRMLT 1180
            IPYA KLLFQELMAM I PR+ T
Sbjct: 1195 IPYAAKLLFQELMAMNITPRLYT 1217


>gi|358337637|dbj|GAA55991.1| DNA-directed RNA polymerase II subunit RPB2 [Clonorchis sinensis]
          Length = 1921

 Score = 1532 bits (3967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 757/1182 (64%), Positives = 908/1182 (76%), Gaps = 45/1182 (3%)

Query: 15   EEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 70
            E + E++EIT    QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q+IV++S  IE++
Sbjct: 771  ERDAEDDEITPDMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIELQ 830

Query: 71   PESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
             E+QH  G      +  Y++ F QIYLSK    E DG +  + P  ARLRNLTY+APLYV
Sbjct: 831  AEAQHTSGVLETPVQ--YRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYV 888

Query: 131  DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
            DV K++I+   DGEE    +   K FIGK+PIMLRS+YC L   S++DL EL ECP D G
Sbjct: 889  DVMKKIIRD--DGEE---EKPLEKKFIGKIPIMLRSTYCLLSIMSDRDLAELNECPLDPG 943

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYFIINGSEKVLIAQEKM+TN V                     E  +RP ST+++ M++
Sbjct: 944  GYFIINGSEKVLIAQEKMATNTVL--------------------EHSSRPASTLWINMMA 983

Query: 251  RTSAKG---GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMEL 307
            R    G    + GQ I A LPYI+ EIP++IVFRALGFVAD+DILEHI YDF DT+M E+
Sbjct: 984  RGGKDGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREM 1043

Query: 308  LRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETK 367
            ++PSL++AFVIQ Q+VAL++IG RGA  GVT++KRIKYAKEILQKE LPHVG  DFCET+
Sbjct: 1044 IKPSLDDAFVIQEQKVALNFIGSRGARPGVTKEKRIKYAKEILQKETLPHVGVSDFCETR 1103

Query: 368  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 427
            KAY+ GY++HRLLL AL RR  DDRDHYGNKRLDLAGPLL  LFR LFR LT+++R Y Q
Sbjct: 1104 KAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQ 1163

Query: 428  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLS 486
            K +D GKD NL+ AI+++ IT GLKYSLATGNWG Q  A   R GVSQVLNRLT+ASTLS
Sbjct: 1164 KFIDKGKDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLS 1223

Query: 487  HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 546
            HLRRLNSPIGR+GKLA+PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   P
Sbjct: 1224 HLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGSAVGLVKNLALMAYISVGSQPSP 1283

Query: 547  ILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV-NTE 605
            ILEFLEEW  EN EEI+P+ I +  KIFVNGCWVGIH  P+ L+ TLR+LRR+VDV  +E
Sbjct: 1284 ILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHNSPDHLMVTLRKLRRQVDVIVSE 1343

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAK 665
            V +VRD R +E+RIYTD GR  RPL IVEK +LL+K+  I  L+ + +     W DLV  
Sbjct: 1344 VSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLLLKRSHIEFLKDK-AYNRYSWQDLVLS 1402

Query: 666  GFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPD 725
            G +EYIDT EEET MI+M   ++ QA +H    Y  T+THCEIHPS+ILG+CASIIPFPD
Sbjct: 1403 GVVEYIDTLEEETVMIAMGPAEM-QAAVH----YCKTHTHCEIHPSMILGICASIIPFPD 1457

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQSAMGKQAMG+Y++N+  RMDTLA VLYYPQKPLV TR+ME+L FR+LPAG
Sbjct: 1458 HNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAG 1517

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
            INAIVAIA Y+GYNQEDSVI+N+S+I RGFFRS F+R+Y+D+E + G   +E F +P+  
Sbjct: 1518 INAIVAIATYTGYNQEDSVILNESAIQRGFFRSEFYRTYKDQEARHGMDQEEVFEKPNPQ 1577

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSIS 903
               GMRH  YDKLDDDGL  PGTRVSG+DV+IGKT   P ++DE +G   RYT+RD S+ 
Sbjct: 1578 QCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVF 1637

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
            +R SE G+VDQV++T N +G +F KVRVR+ + PQ+GDKF+SRHGQKGT G+ Y QEDMP
Sbjct: 1638 MRRSEYGIVDQVMITWNNEGNKFCKVRVRTTKTPQVGDKFASRHGQKGTCGIRYRQEDMP 1697

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKAL 1022
            +T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L
Sbjct: 1698 FTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVRKISLLL 1757

Query: 1023 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1082
             + GYQ  G E MYNG TGR+L + IFLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP 
Sbjct: 1758 QEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPM 1817

Query: 1083 EGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSF 1142
            EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF  SD Y+V+VC  CGLIAIA+ +  ++
Sbjct: 1818 EGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIAHQRNKTY 1877

Query: 1143 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDT 1184
            ECR CKN T I  V +PYACKLLFQELM+M+IAPRM+    T
Sbjct: 1878 ECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRMMVTGTT 1919


>gi|365758370|gb|EHN00218.1| Rpb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1224

 Score = 1531 bits (3964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 742/1220 (60%), Positives = 924/1220 (75%), Gaps = 58/1220 (4%)

Query: 8    YEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 67
            Y ++ Q   EDE   IT ED+WAVISA+F EKGLV QQLDSF++F+  T+Q+I+ E + +
Sbjct: 10   YYDEDQYGFEDERAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTL 69

Query: 68   EIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 127
             +   +QH    +SD     Y+ISFG+IY++KPM+ ESDG T  L+P+ ARLRNLTYS+ 
Sbjct: 70   ILEQLAQHT--TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSG 127

Query: 128  LYVDVTKRV----------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEK 177
            L+VDV KR           +K     EE  +  +  KVFIG++PIMLRS  C L + +E 
Sbjct: 128  LFVDVKKRTYEAVDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATES 187

Query: 178  DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQ 237
            DL +L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  
Sbjct: 188  DLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKG 247

Query: 238  NRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY 297
            +R  ST+ V++  R     GSS + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICY
Sbjct: 248  SRFISTLQVKLYGRE----GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICY 303

Query: 298  DFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPH 357
            D  D QM+E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH
Sbjct: 304  DVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPH 363

Query: 358  VGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRK 417
            +   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPL+  LF+ LF+K
Sbjct: 364  ITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLMAQLFKTLFKK 423

Query: 418  LTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVL 476
            LT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVL
Sbjct: 424  LTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVL 483

Query: 477  NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 536
            NR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM 
Sbjct: 484  NRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMS 543

Query: 537  YITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRL 596
             I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++TLR L
Sbjct: 544  CISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTL 603

Query: 597  RRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQ 650
            RR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  +  L  
Sbjct: 604  RRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHVGKLMA 663

Query: 651  RESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA--- 698
             E  + +GG        W  L+ +G +EYID EEEE+ +I+M   DL      P E    
Sbjct: 664  TEYQDIEGGFEDAEEYTWSTLLNEGLVEYIDAEEEESILIAMQPEDL-----EPNEGSEE 718

Query: 699  ---------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
                           +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 719  NDLDVDPAKRIRVARHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 778

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 779  GVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDS 838

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            +IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL
Sbjct: 839  MIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGL 898

Query: 864  APPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSGEDVIIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN 
Sbjct: 899  IAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQ 958

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIP
Sbjct: 959  DGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIP 1018

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG
Sbjct: 1019 SRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTG 1078

Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
            ++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCM
Sbjct: 1079 KKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCM 1138

Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPY 1160
            IAHGA+ FLKERL + SDA+RVH+C  CGL+  IA L  N FEC+GC NK DI Q+HIPY
Sbjct: 1139 IAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPY 1198

Query: 1161 ACKLLFQELMAMAIAPRMLT 1180
            A KLLFQELMAM I PR+ T
Sbjct: 1199 AAKLLFQELMAMNITPRLYT 1218


>gi|401623583|gb|EJS41677.1| rpb2p [Saccharomyces arboricola H-6]
          Length = 1224

 Score = 1531 bits (3964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 740/1206 (61%), Positives = 917/1206 (76%), Gaps = 48/1206 (3%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            EDE   IT ED+WAVISA+F EKGLV QQLDSF++F+  T+Q+I+ E + + +   +QH 
Sbjct: 19   EDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHT 78

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
               +SD     Y+ISFG+IY++KPM+ ESDG T  L+P+ ARLRNLTYS+ L+VDV KR 
Sbjct: 79   --TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRT 136

Query: 137  ----------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
                      +K     EE  +  +  KVFIG++PIMLRS  C L + +E DL +L ECP
Sbjct: 137  YEAVDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECP 196

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            +D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  ST+ V
Sbjct: 197  FDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQV 256

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            ++  R     GSS + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD  D QM+E
Sbjct: 257  KLYGRE----GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLE 312

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  E+
Sbjct: 313  MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 372

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LF+KLT+D+  Y+
Sbjct: 373  RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYM 432

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+STL
Sbjct: 433  QRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 492

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+   
Sbjct: 493  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 552

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N E
Sbjct: 553  PIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPE 612

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR---------DIIALQQR----- 651
            V ++RDIR KEL+I+TD GR  RPLFIVE    L  K           I+A + +     
Sbjct: 613  VSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIGKIMATEYQDIEGG 672

Query: 652  -ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE------------- 697
             E  E+  W  L+ +G +EYID EEEE+ +I+M   DL       E              
Sbjct: 673  FEDSEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTESGEENDPDVDPAKRIRVS 732

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
             +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+
Sbjct: 733  HHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTM 792

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FR
Sbjct: 793  ANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 852

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSGEDVII
Sbjct: 853  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVII 912

Query: 878  GKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN DGL+FVKVRVR+ +
Sbjct: 913  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTK 972

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            +PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC++ 
Sbjct: 973  VPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1032

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A IF GPTYY
Sbjct: 1033 KVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYY 1092

Query: 1056 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLF 1115
            QRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL 
Sbjct: 1093 QRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLM 1152

Query: 1116 DQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1174
            + SDA+RVH+C  CGL+  IA L  N FEC+GC NK DI Q+HIPYA KLLFQELMAM I
Sbjct: 1153 EASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNI 1212

Query: 1175 APRMLT 1180
             PR+ T
Sbjct: 1213 TPRLYT 1218


>gi|254567802|ref|XP_002491011.1| RNA polymerase II second largest subunit B150, part of central core
            [Komagataella pastoris GS115]
 gi|238030808|emb|CAY68731.1| RNA polymerase II second largest subunit B150, part of central core
            [Komagataella pastoris GS115]
 gi|328352458|emb|CCA38857.1| DNA-directed RNA polymerase III subunit C2 [Komagataella pastoris CBS
            7435]
          Length = 1227

 Score = 1531 bits (3963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 741/1216 (60%), Positives = 922/1216 (75%), Gaps = 59/1216 (4%)

Query: 20   EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
            ++ IT ED W VISA+FEEKGLV QQLDSFDEF++ ++Q++V E   + +   +QH    
Sbjct: 9    DDTITTEDCWTVISAFFEEKGLVSQQLDSFDEFMETSIQDLVWEEPRLILDQPAQHT--N 66

Query: 80   QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
            + D     Y+I FG+IYLS+P MTE+DG T  +FP+ ARLRNLTYS+P+Y+D+ K +   
Sbjct: 67   EKDNINKRYEIRFGKIYLSRPTMTEADGTTHAMFPQEARLRNLTYSSPVYLDMEKSMFTS 126

Query: 140  GHDGEEVTETQDF--------------TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
              D      T D+               KV IGKVPIMLRS +C+L    E DL ++ EC
Sbjct: 127  IDDEGNPNATLDWQQVHEPIKDGVEEGNKVHIGKVPIMLRSKFCSLRTLDEVDLYKMKEC 186

Query: 186  PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
            PYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  STM 
Sbjct: 187  PYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISTMQ 246

Query: 246  VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
            +++  R   KG  +G+ I+ATLPY++ +IPI+IVFRALG V D +IL+HICYD  D QM+
Sbjct: 247  IKLYGRED-KG--TGRTIKATLPYVKQDIPIVIVFRALGVVPDGEILQHICYDENDWQML 303

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            E+L+P +EE FVIQ+++VALD+IG+RG A +G+ R+KRI+YAK+ILQKE+LPH+   +  
Sbjct: 304  EMLKPCIEEGFVIQDKEVALDFIGRRGSAALGIRREKRIQYAKDILQKELLPHITQEEGF 363

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+K ++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+LFRKLTR++  
Sbjct: 364  ETRKTFFLGYMVNRLLLCALERKDQDDRDHFGKKRLDLAGPLLANLFRILFRKLTREIYR 423

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+C++  +D NL  A+K+ TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 424  YMQRCIETDRDFNLNLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 483

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+L+  I++GS 
Sbjct: 484  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLSGISIGSP 543

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI+ FLEEWG E  E+  PA   ++T+IFVNG W GIHRDP MLV T+R LRR   ++
Sbjct: 544  SEPIINFLEEWGMEPLEDYDPAQHTKSTRIFVNGVWTGIHRDPSMLVSTMRDLRRSGAIS 603

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQ------ 650
             EV ++RDIR +E +I+TD GR  RPLFIVE       K  L I K  I  +QQ      
Sbjct: 604  PEVSIIRDIREREFKIFTDVGRVYRPLFIVEDDESKDNKGELRITKEHIRKIQQGYDDDA 663

Query: 651  -----RESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL--------------VQ 690
                  E  +D  GW  LV  G IEY+D EEEET MI+MT  DL                
Sbjct: 664  MNDDSEEQEQDVYGWSSLVTSGVIEYVDGEEEETIMIAMTPEDLQTRSLEQKEIDLNDTA 723

Query: 691  ARLHPEEAYAD--TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
             R+ PE + +   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++T
Sbjct: 724  KRIKPEMSTSSHHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 783

Query: 749  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
            NY  RMDT+A +LYYPQKPL  T+AME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQ
Sbjct: 784  NYNVRMDTMANILYYPQKPLAKTQAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 843

Query: 809  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
            SSIDRG FRSLFFRSY D+EK+ G  + E+F +P R+ T+ ++HG+Y+KLD+DGL  PG 
Sbjct: 844  SSIDRGLFRSLFFRSYMDQEKRFGISIVEEFEKPTRATTLRLKHGTYEKLDEDGLIAPGV 903

Query: 869  RVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
            RVSG+D+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E G+VDQVLLTTN +GL+F
Sbjct: 904  RVSGDDIIIGKTTPIPPDTEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLKF 963

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
            VKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EGI PD+I+NPHAIPSRMT+
Sbjct: 964  VKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTV 1023

Query: 987  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
              LIEC++ KV +  G EGDATPFTD+TVD +S  L   GYQ RGFE MYNGHTG++L A
Sbjct: 1024 AHLIECLLSKVGSIRGYEGDATPFTDLTVDAVSNLLRDNGYQSRGFEVMYNGHTGKKLMA 1083

Query: 1047 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 1106
             +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDCMIAHGA
Sbjct: 1084 QVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGA 1143

Query: 1107 SHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLL 1165
            + FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKNKT+I Q+HIPYA KLL
Sbjct: 1144 AGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQLHIPYAAKLL 1203

Query: 1166 FQELMAMAIAPRMLTK 1181
            FQELMAM IAPR+ T+
Sbjct: 1204 FQELMAMNIAPRLYTE 1219


>gi|410079905|ref|XP_003957533.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
 gi|372464119|emb|CCF58398.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
          Length = 1222

 Score = 1531 bits (3963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 740/1209 (61%), Positives = 922/1209 (76%), Gaps = 52/1209 (4%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            EDE   IT ED+WAVIS++F EKGLV QQLDSF++F+  T+Q+I+ E + + +   +QH 
Sbjct: 15   EDESAPITAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHT 74

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
               ++D     Y+ISFG+IY++KPM+ ESDG T  L+P+ ARLRNLTYS+ L+VDV KR 
Sbjct: 75   --TEADNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVRKRT 132

Query: 137  IKK----GHD------GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
             +     G D       EE  +  +  KVFIG++PIMLRS  C L   +E DL +L ECP
Sbjct: 133  YEAVDVPGRDLKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECP 192

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            +D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  ST+ V
Sbjct: 193  FDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQV 252

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            ++  R S    SS + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD  D QM+E
Sbjct: 253  KLYGRES----SSSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLE 308

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  E+
Sbjct: 309  MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 368

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+ LFRKLT+D+  Y+
Sbjct: 369  RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYM 428

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+STL
Sbjct: 429  QRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 488

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+   
Sbjct: 489  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 548

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N E
Sbjct: 549  PIITFLSEWGMEPLEDYIPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPE 608

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-DGG 658
            V ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I  L   E  + +GG
Sbjct: 609  VSMIRDIREKELKIFTDAGRVYRPLFIVEDDEALGHKELKVRKGHINKLMATEYQDIEGG 668

Query: 659  --------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT-------- 702
                    W  L+ +G +EYID EEEET +I+M   DL +     EE   DT        
Sbjct: 669  FEDSEEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDL-EPMGEEEETQNDTAMDPAKRI 727

Query: 703  --------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
                    +THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM
Sbjct: 728  KATQNATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFNVRM 787

Query: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
            DT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG
Sbjct: 788  DTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRG 847

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
             FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSGED
Sbjct: 848  LFRSLFFRSYMDQEKKYGMSITETFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGED 907

Query: 875  VIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
            +IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN DGL+FVKVRVR
Sbjct: 908  IIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVR 967

Query: 933  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
            + ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T +GI PD+I+NPHAIPSRMT+  LIEC
Sbjct: 968  TTKVPQIGDKFASRHGQKGTIGITYRREDMPFTADGIVPDLIINPHAIPSRMTVAHLIEC 1027

Query: 993  IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1052
            ++ KVAA  G EGDA+PFTD+TV+ ISK L + GY  RGFE MYNGHTG++L A IF GP
Sbjct: 1028 LLSKVAALSGNEGDASPFTDITVEGISKLLREHGYHSRGFEVMYNGHTGKKLMAQIFFGP 1087

Query: 1053 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 1112
            TYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKE
Sbjct: 1088 TYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKE 1147

Query: 1113 RLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 1171
            RL + SDA+RVH+C +CGL++ IA L  N FEC+GC NK DI Q+HIPYA KLLFQELMA
Sbjct: 1148 RLMEASDAFRVHICGNCGLMSVIAKLSHNQFECKGCNNKIDIYQIHIPYAAKLLFQELMA 1207

Query: 1172 MAIAPRMLT 1180
            M I PR+ T
Sbjct: 1208 MNITPRLFT 1216


>gi|403214331|emb|CCK68832.1| hypothetical protein KNAG_0B03910 [Kazachstania naganishii CBS 8797]
          Length = 1220

 Score = 1529 bits (3959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 736/1206 (61%), Positives = 922/1206 (76%), Gaps = 48/1206 (3%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            EDE   IT ED+W VIS++F EKGLV QQLDSF++F+  T+Q+I+ E + + +   +QH 
Sbjct: 15   EDESAPITAEDSWTVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSRLILEQLAQHT 74

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
               ++D     Y+ISFG+IY++KPM+ ESDG T  L+P+ +RLRNLTYS+ L+VDV KR 
Sbjct: 75   --TEADNISRKYEISFGKIYVTKPMVNESDGVTHALYPQESRLRNLTYSSGLFVDVKKRT 132

Query: 137  IKK----GHD------GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
             +     G D       EE  +  +  KVFIG++PIMLRS  C L   +E DL +L ECP
Sbjct: 133  YEAIDVPGRDLKYELIAEESEDDSERGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECP 192

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            +D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  ST+ V
Sbjct: 193  FDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQV 252

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            ++  R     GSS + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD  D QM+E
Sbjct: 253  KLYGRE----GSSSRTIKATLPYIKQDIPIVIIFRALGVIPDGEILEHICYDVNDWQMLE 308

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  E+
Sbjct: 309  MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 368

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+ LFRKLT+D+  Y+
Sbjct: 369  RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYM 428

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+STL
Sbjct: 429  QRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 488

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+   
Sbjct: 489  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSSISVGTDPM 548

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N E
Sbjct: 549  PIITFLSEWGLEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPE 608

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-DGG 658
            V ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I  L   E  + +GG
Sbjct: 609  VSMIRDIREKELKIFTDAGRVYRPLFIVEDDEALGHKELKVRKGHIAKLMATEYQDIEGG 668

Query: 659  --------WHDLVAKGFIEYIDTEEEETTMISMT-------------INDLVQARLHPEE 697
                    W  L+ +G +EYID EEEET +I+M              I+D+  A+     
Sbjct: 669  LDEADEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPVIEEENPIDDMDPAKRIKAS 728

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
              A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+
Sbjct: 729  QNATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTM 788

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FR
Sbjct: 789  ANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 848

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSGED+II
Sbjct: 849  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIII 908

Query: 878  GKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKTTPIS DE + GQ + Y ++RD S  LR +E G++DQVL+TTN DGL+FVKVRVR+ +
Sbjct: 909  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIIDQVLVTTNQDGLKFVKVRVRTTK 968

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            +PQIGDKF+SRHGQKGT+G+TY++EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC++ 
Sbjct: 969  VPQIGDKFASRHGQKGTIGITYSREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1028

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KVAA  G EGDA+PFTD+TV+ ISK L + GY  RGFE MYNGHTG++L A IF GPTYY
Sbjct: 1029 KVAALSGNEGDASPFTDITVEGISKLLREHGYHSRGFEVMYNGHTGKKLMAQIFFGPTYY 1088

Query: 1056 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLF 1115
            QRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL 
Sbjct: 1089 QRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLM 1148

Query: 1116 DQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1174
            + SD++RVH+C +CGL++ IA L  N FEC+GC NK DI Q+ IPYA KLLFQELMAM I
Sbjct: 1149 EASDSFRVHICGNCGLMSVIAKLSHNQFECKGCNNKIDIYQIRIPYAAKLLFQELMAMNI 1208

Query: 1175 APRMLT 1180
             PR+ T
Sbjct: 1209 TPRLYT 1214


>gi|241948201|ref|XP_002416823.1| DNA-dependent RNA polymerase II component, putative [Candida
            dubliniensis CD36]
 gi|223640161|emb|CAX44408.1| DNA-dependent RNA polymerase II component, putative [Candida
            dubliniensis CD36]
          Length = 1234

 Score = 1529 bits (3958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 745/1233 (60%), Positives = 931/1233 (75%), Gaps = 66/1233 (5%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            M D Y Y+          +E ITQED W VI+++F+EKGLV QQLDSFDEF++ ++QE+V
Sbjct: 7    MADPYQYDSI--------DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELV 58

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
             E + + +   +QH    + D     Y+I+FG+IY+SKP  TE DG T  +FP+ ARLRN
Sbjct: 59   WEDSHLILDQPAQHT--SEKDHENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRN 116

Query: 122  LTYSAPLYVDVTKRVIK------KGHDGEEVTETQDF---TKVFIGKVPIMLRSSYCTLY 172
            LTYS+PLYVD+T +V K      K ++ E + E  D    TKVF+GKVPIMLRS +C L 
Sbjct: 117  LTYSSPLYVDMTSKVFKSDDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLR 176

Query: 173  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 232
              +E +  EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS
Sbjct: 177  DLAEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRS 236

Query: 233  MAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 292
              E  +R  S+M +++  R   + G SG+ I+ATLPYI+ +IPI+IVFRALG V D DIL
Sbjct: 237  AIEKGSRLISSMQIKLYGRD--EKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDIL 294

Query: 293  EHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQK 352
            EHICYD  D QM+E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQK
Sbjct: 295  EHICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQK 353

Query: 353  EMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 412
            E+LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR
Sbjct: 354  ELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFR 413

Query: 413  MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAG 471
            +LF+KLT+D+  Y+Q+CV+NG D N+  A+K++TIT GL+YSLATGNWG Q  A  +RAG
Sbjct: 414  ILFKKLTKDIYNYMQRCVENGGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAG 473

Query: 472  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 531
            VSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKN
Sbjct: 474  VSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKN 533

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 591
            L+LM  I+VG+ + PIL FL ++G E  E+  P+  P +T++FVNG WVG+HRDP  LV 
Sbjct: 534  LSLMTCISVGTPSEPILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVD 593

Query: 592  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRD 644
             +R LRR  D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L I K  
Sbjct: 594  FMRELRRSGDLSPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNPESETKGELKITKEH 653

Query: 645  IIALQQRESPEDGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDLV------ 689
            I  L + +  ++           W  LVA G +EY+D EEEET MI+MT +D+       
Sbjct: 654  IKQLLRSDELDEDDEDYDNTRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKDSV 713

Query: 690  ----QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
                Q ++  EE   D              TYTHCEIHPS+ILGV ASIIPFPDHNQSPR
Sbjct: 714  SESEQQKIQLEEQELDPGKRIKPTTSGSTHTYTHCEIHPSMILGVAASIIPFPDHNQSPR 773

Query: 732  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
            NTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVA
Sbjct: 774  NTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVA 833

Query: 792  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 851
            IACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++
Sbjct: 834  IACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLK 893

Query: 852  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSET 909
            HG+Y+KLD+DGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+
Sbjct: 894  HGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLRSTES 953

Query: 910  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
            G+VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI
Sbjct: 954  GIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGI 1013

Query: 970  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1029
             PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + IS  L   GYQ 
Sbjct: 1014 VPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDVTTEQISTLLRDHGYQS 1073

Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1089
            RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDG
Sbjct: 1074 RGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDG 1133

Query: 1090 GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCK 1148
            GLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CK
Sbjct: 1134 GLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCK 1193

Query: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            NKT+I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1194 NKTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1226


>gi|366996268|ref|XP_003677897.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
 gi|342303767|emb|CCC71550.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
          Length = 1224

 Score = 1529 bits (3958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 744/1221 (60%), Positives = 927/1221 (75%), Gaps = 49/1221 (4%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            E++Y Y+E      EDE   IT EDAWAVIS++F EKGLV QQLDSF++F+  T+Q+I+ 
Sbjct: 6    EEEY-YDEDDVYGFEDENAPITAEDAWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIIS 64

Query: 63   ESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
            E + + +   +QH    ++D     Y+I FG+IY++KPM+ ESDG T  L+P+ ARLRNL
Sbjct: 65   EDSTLILEQLAQHT--TETDNVSRKYEIGFGKIYVTKPMVNESDGVTHALYPQEARLRNL 122

Query: 123  TYSAPLYVDVTKRV----------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLY 172
            TYS+ L+VDV KR           +K     EE  E  +  KVFIG++PIMLRS  C L 
Sbjct: 123  TYSSGLFVDVKKRTYEAVDVPGRELKYELIAEESEEESESGKVFIGRLPIMLRSKNCYLS 182

Query: 173  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 232
              +E DL +L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS
Sbjct: 183  DATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRS 242

Query: 233  MAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 292
              E  +R  ST+ V++  R     GS  + I ATLPYI+ +IPI+I+FRALG + D +IL
Sbjct: 243  ALEKGSRFISTLQVKLYGRE----GSDARTINATLPYIKQDIPIVIIFRALGIIPDGEIL 298

Query: 293  EHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQK 352
            EHICYD  D QM+E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQK
Sbjct: 299  EHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQK 358

Query: 353  EMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 412
            E LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+
Sbjct: 359  EFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLASLFK 418

Query: 413  MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAG 471
             LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAG
Sbjct: 419  TLFRKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAG 478

Query: 472  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 531
            VSQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKN
Sbjct: 479  VSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKN 538

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 591
            L+LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L+ 
Sbjct: 539  LSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMD 598

Query: 592  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI 645
            TLR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I
Sbjct: 599  TLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHI 658

Query: 646  IALQQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISM------------- 683
              L   E  + +GG        W  L+ +G +EYID EEEET +ISM             
Sbjct: 659  AKLMATEYQDIEGGFEDAEEYTWTSLLNEGLVEYIDAEEEETILISMQPEDLEPPMENEE 718

Query: 684  TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
             I+D+  A+      +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 719  VIDDMDPAKRIRATQHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 778

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 779  GVFLTNYNVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDS 838

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            +IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL
Sbjct: 839  MIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGL 898

Query: 864  APPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN 
Sbjct: 899  IAPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQ 958

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIP
Sbjct: 959  DGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIP 1018

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG
Sbjct: 1019 SRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTG 1078

Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
            ++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCM
Sbjct: 1079 KKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCM 1138

Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPY 1160
            IAHGA+ FLKERL + SDA+RVH+C +CGL++ IA L  N FEC+GC NK DI Q+HIPY
Sbjct: 1139 IAHGAAAFLKERLMEASDAFRVHICGNCGLMSVIAKLNHNQFECKGCDNKIDIYQIHIPY 1198

Query: 1161 ACKLLFQELMAMAIAPRMLTK 1181
            A KLLFQELMAM I PR+ T+
Sbjct: 1199 AAKLLFQELMAMNITPRLYTE 1219


>gi|68475107|ref|XP_718439.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
 gi|68475648|ref|XP_718172.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
 gi|46439928|gb|EAK99240.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
 gi|46440204|gb|EAK99513.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
 gi|238879352|gb|EEQ42990.1| DNA-directed RNA polymerase II polypeptide 2 [Candida albicans WO-1]
          Length = 1234

 Score = 1528 bits (3957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 744/1233 (60%), Positives = 931/1233 (75%), Gaps = 66/1233 (5%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            M D Y Y+          +E ITQED W VI+++F+EKGLV QQLDSFDEF++ ++QE+V
Sbjct: 7    MADPYQYDSI--------DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELV 58

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
             E + + +   +QH    + D     Y+I+FG+IY+SKP  TE DG T  +FP+ ARLRN
Sbjct: 59   WEDSHLILDQPAQHT--SEKDHENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRN 116

Query: 122  LTYSAPLYVDVTKRVIK------KGHDGEEVTETQDF---TKVFIGKVPIMLRSSYCTLY 172
            LTYS+PLYVD+T +V K      K ++ E + E  D    TKVF+GKVPIMLRS +C L 
Sbjct: 117  LTYSSPLYVDMTSKVFKSDDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLR 176

Query: 173  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 232
              +E +  EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS
Sbjct: 177  DLAEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRS 236

Query: 233  MAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 292
              E  +R  S+M +++  R   + G SG+ I+ATLPYI+ +IPI+IVFRALG V D DIL
Sbjct: 237  AIEKGSRLISSMQIKLYGRD--EKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDIL 294

Query: 293  EHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQK 352
            EHICYD  D QM+E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQK
Sbjct: 295  EHICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQK 353

Query: 353  EMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 412
            E+LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR
Sbjct: 354  ELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFR 413

Query: 413  MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAG 471
            +LF+KLT+D+  Y+Q+CV+NG D N+  A+K++TIT GL+YSLATGNWG Q  A  +RAG
Sbjct: 414  ILFKKLTKDIYNYMQRCVENGGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAG 473

Query: 472  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 531
            VSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKN
Sbjct: 474  VSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKN 533

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 591
            L+LM  I+VG+ + PIL FL ++G E  E+  P+  P +T++FVNG WVG+HRDP  LV 
Sbjct: 534  LSLMTCISVGTPSEPILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVD 593

Query: 592  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRD 644
             +R LRR  D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L I K  
Sbjct: 594  FMRELRRSGDLSPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNPDSETKGELKITKEH 653

Query: 645  IIALQQRESPEDGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDLV------ 689
            +  L + +  ++           W  LVA G +EY+D EEEET MI+MT +D+       
Sbjct: 654  VKQLLRSDELDEDDEDYENSRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKNSV 713

Query: 690  ----QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
                Q ++  EE   D              TYTHCEIHPS+ILGV ASIIPFPDHNQSPR
Sbjct: 714  SESEQQKIQLEEQELDPGKRIKPTTSGNTHTYTHCEIHPSMILGVAASIIPFPDHNQSPR 773

Query: 732  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
            NTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVA
Sbjct: 774  NTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVA 833

Query: 792  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 851
            IACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++
Sbjct: 834  IACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLK 893

Query: 852  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSET 909
            HG+Y+KLD+DGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+
Sbjct: 894  HGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLRSTES 953

Query: 910  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
            G+VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI
Sbjct: 954  GIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGI 1013

Query: 970  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1029
             PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + IS  L   GYQ 
Sbjct: 1014 VPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDVTTEQISTLLRDHGYQS 1073

Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1089
            RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDG
Sbjct: 1074 RGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDG 1133

Query: 1090 GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCK 1148
            GLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CK
Sbjct: 1134 GLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCK 1193

Query: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            NKT+I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1194 NKTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1226


>gi|172211|gb|AAA68096.1| RNA polymerase II 48 kd subunit [Saccharomyces cerevisiae]
          Length = 1224

 Score = 1528 bits (3957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 740/1206 (61%), Positives = 918/1206 (76%), Gaps = 48/1206 (3%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            EDE   IT ED+WAVISA+F EKGLV QQLDSF++F+  T+Q+I+ E + + +   +QH 
Sbjct: 19   EDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHT 78

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
               +SD     Y+ISFG+IY++KPM+ ESDG T  L+P+ ARLRNLTYS+ L+VDV KR 
Sbjct: 79   --TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRT 136

Query: 137  ----------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
                      +K     EE  +  +  KVFIG++PIMLRS  C L + +E DL +L ECP
Sbjct: 137  YEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECP 196

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            +D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  ST+ V
Sbjct: 197  FDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQV 256

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            ++  R     GSS + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD  D QM+E
Sbjct: 257  KLYGRE----GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLE 312

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  E+
Sbjct: 313  MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 372

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LF+KLT+D+  Y+
Sbjct: 373  RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYM 432

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+STL
Sbjct: 433  QRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 492

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+   
Sbjct: 493  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 552

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N E
Sbjct: 553  PIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPE 612

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-DGG 658
            V ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I  L   E  + +GG
Sbjct: 613  VSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGG 672

Query: 659  --------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE------------- 697
                    W  L+ +G +EYID EEEE+ +I+M   DL  A  + E              
Sbjct: 673  FEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVS 732

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
             +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+
Sbjct: 733  HHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTM 792

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FR
Sbjct: 793  ANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 852

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSGEDVII
Sbjct: 853  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVII 912

Query: 878  GKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN DGL+FVKVRVR+ +
Sbjct: 913  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTK 972

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            IPQIGDKF+SRHGQKGT+G+TY +EDMP+T     PD+I+NPHAIPSRMT+  LIEC++ 
Sbjct: 973  IPQIGDKFASRHGQKGTIGITYRREDMPFTRRRYVPDLIINPHAIPSRMTVAHLIECLLS 1032

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A IF GPTYY
Sbjct: 1033 KVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYY 1092

Query: 1056 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLF 1115
            QRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL 
Sbjct: 1093 QRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLM 1152

Query: 1116 DQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1174
            + SDA+RVH+C  CGL+  IA L  N FEC+GC NK DI Q+HIPYA KLLFQELMAM I
Sbjct: 1153 EASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNI 1212

Query: 1175 APRMLT 1180
             PR+ T
Sbjct: 1213 TPRLYT 1218


>gi|363752349|ref|XP_003646391.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
 gi|356890026|gb|AET39574.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1222

 Score = 1528 bits (3956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 737/1220 (60%), Positives = 932/1220 (76%), Gaps = 50/1220 (4%)

Query: 5    DYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
            +Y  ++ +  E++D++  IT ED+W VISA+F EKGLV QQLDSF++FI  T+Q+++ E 
Sbjct: 3    EYYEDDAYVYEDDDDDAPITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILED 62

Query: 65   ADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 124
            + + +   +QH    +SD     Y+ISFG+IYL+KP MTESDG +  ++P+ ARLRNLTY
Sbjct: 63   STLILEQLAQHT--TESDNISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTY 120

Query: 125  SAPLYVDVTKRVIKK----GHDG-----EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS 175
            ++ L+V++ KR  +     G D      +E +E  +  K+FIG+VPIMLRS YC L   S
Sbjct: 121  ASGLFVEIKKRTYEAVDVPGRDLKYEIIQEESEDSEEGKIFIGRVPIMLRSKYCLLDDLS 180

Query: 176  EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE 235
            E DL  L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E
Sbjct: 181  ESDLYRLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKSAPSPISHVAEIRSALE 240

Query: 236  SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 295
              +R  ST+ V++  R     GS+ + I+ATLPYI+ ++PI+I+FRALG + D +ILEHI
Sbjct: 241  KGSRFISTLQVKLYGRE----GSTSRTIKATLPYIKQDVPIVIIFRALGIIPDGEILEHI 296

Query: 296  CYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEML 355
            CYD  D QM+E+L+P +EE FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE L
Sbjct: 297  CYDQNDWQMLEMLKPCVEEGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFL 356

Query: 356  PHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 415
            PH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LF
Sbjct: 357  PHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLF 416

Query: 416  RKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQ 474
            RKLTRD+  ++Q+ V+  KD NL+ A+KA TIT+GLKY+LATGNWG Q  A  +RAGVSQ
Sbjct: 417  RKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQ 476

Query: 475  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 534
            VLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+L
Sbjct: 477  VLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSL 536

Query: 535  MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 594
            M  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV T+R
Sbjct: 537  MSCISVGTDPVPIITFLNEWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDTIR 596

Query: 595  RLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-------QRLLIKKRDIIA 647
            +LRR+ D+  EV +VRDIR KEL+I+TD GR  RPLF+V +       + L ++K  I  
Sbjct: 597  KLRRKGDITAEVSIVRDIREKELKIFTDAGRVYRPLFVVAESLHNDGHKELKVRKGHIRK 656

Query: 648  LQQRESPE-DGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQARLH 694
            L   E  + +GG         W  L+ +G +EYID EEEET +I+M   DL   V     
Sbjct: 657  LMLTEYQDIEGGFEEEDINYTWTSLLNEGIVEYIDAEEEETILIAMQQEDLDPNVPQTAD 716

Query: 695  PEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
            P +            +++T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 717  PSDELDPARRIKAIHHSNTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 776

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 777  GVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDS 836

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            +IMNQSSIDRG FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+YDKLDDDGL
Sbjct: 837  MIMNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGL 896

Query: 864  APPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG+D+IIGKTTPI  D E  GQ + + ++RD S  LR +E G+VDQVL+TTN 
Sbjct: 897  IAPGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQ 956

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +GL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHAIP
Sbjct: 957  EGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTSEGVVPDLIINPHAIP 1016

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMT+  LIEC++ KVAA  G EGDA+PFTD+TVD IS+ L + GYQ RGFE MYNGHTG
Sbjct: 1017 SRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTG 1076

Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
            ++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCM
Sbjct: 1077 KKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCM 1136

Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPY 1160
            IAHGA+ FLKERL + SDA+RVH+C  CGL+  +A LK N FECRGCKNK DI QVHIPY
Sbjct: 1137 IAHGAAAFLKERLMEASDAFRVHICGICGLMTVVAKLKHNQFECRGCKNKIDIFQVHIPY 1196

Query: 1161 ACKLLFQELMAMAIAPRMLT 1180
            A KLLFQELMAM IAPR+ T
Sbjct: 1197 AAKLLFQELMAMNIAPRLYT 1216


>gi|156835986|ref|XP_001642238.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
 gi|156112711|gb|EDO14380.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
          Length = 1223

 Score = 1527 bits (3953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 747/1220 (61%), Positives = 926/1220 (75%), Gaps = 58/1220 (4%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            ED Y +EE        E   IT ED+WAVIS++F EKGLV QQLDSF++F+  T+Q+I+ 
Sbjct: 10   EDPYGFEE--------ETAPITAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIIS 61

Query: 63   ESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
            E + + +   +QH    +SD     Y+ISFG+IY++KPM+ ESDG T  L+P+ +RLRNL
Sbjct: 62   EDSTLILEQLAQHT--TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQESRLRNL 119

Query: 123  TYSAPLYVDVTKRVIKK----GHD------GEEVTETQDFTKVFIGKVPIMLRSSYCTLY 172
            TYS+ L+VDV KR  +     G D       EE  E  +  KVFIG++PIMLRS  C L 
Sbjct: 120  TYSSGLFVDVNKRTYEAVDVPGRDLNYQLIAEESEEDNENDKVFIGRLPIMLRSKNCYLS 179

Query: 173  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 232
              +E DL +L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS
Sbjct: 180  DATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRS 239

Query: 233  MAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 292
              E  +R  ST+ V++  R     GSS + I+ATLPYI+ +IPI+I+FRALG + D +IL
Sbjct: 240  ALEKGSRFISTLQVKLYGRE----GSSTRTIKATLPYIKQDIPIVIIFRALGIIPDGEIL 295

Query: 293  EHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQK 352
            EHICYD  D QM+E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YA++ILQK
Sbjct: 296  EHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQK 355

Query: 353  EMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 412
            E LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+
Sbjct: 356  EFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFK 415

Query: 413  MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAG 471
             LFRKLT+D+  Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAG
Sbjct: 416  TLFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAG 475

Query: 472  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 531
            VSQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKN
Sbjct: 476  VSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKN 535

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 591
            L+LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++
Sbjct: 536  LSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLME 595

Query: 592  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI 645
            TLR LRR+ D+N EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I
Sbjct: 596  TLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVENDEQLGHKELKVRKGHI 655

Query: 646  IALQQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDL--VQ---- 690
              L   E  + +GG        W  L+ +G +EYID EEEET +I+M   DL  VQ    
Sbjct: 656  ARLMATEYQDIEGGFEDSEEYTWSSLLNEGLVEYIDAEEEETILIAMQPEDLDPVQEEEE 715

Query: 691  ---------ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741
                     A+      +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 716  MEVDENVDTAKRIRSVHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQ 775

Query: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801
            AMG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQE
Sbjct: 776  AMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQE 835

Query: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 861
            DS+IMNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HGSYDKLDDD
Sbjct: 836  DSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDD 895

Query: 862  GLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTT 919
            GL  PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TT
Sbjct: 896  GLIAPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITT 955

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
            N DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHA
Sbjct: 956  NQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHA 1015

Query: 980  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
            IPSRMT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGH
Sbjct: 1016 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGH 1075

Query: 1040 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1099
            TG++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERD
Sbjct: 1076 TGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1135

Query: 1100 CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHI 1158
            CMIAHGA+ FLKERL + SDA+RVH+C  CGL+  IA L  N FEC+GC NK DI Q+HI
Sbjct: 1136 CMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHI 1195

Query: 1159 PYACKLLFQELMAMAIAPRM 1178
            PYA KLLFQELMAM I PR+
Sbjct: 1196 PYAAKLLFQELMAMNITPRL 1215


>gi|254581920|ref|XP_002496945.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
 gi|238939837|emb|CAR28012.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
          Length = 1224

 Score = 1527 bits (3953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1218 (61%), Positives = 928/1218 (76%), Gaps = 48/1218 (3%)

Query: 5    DYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
            D DY  +     EDE   IT ED+WAVISA+F EKGLV QQLDSF++F+  T+Q+I+ E 
Sbjct: 7    DEDYYAEDPYGYEDENFPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISED 66

Query: 65   ADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 124
            + + +   +QH    +SD     Y+ISFG+IY++KPM+ ESDG T  L+P+ ARLRNLTY
Sbjct: 67   STLILEQLAQHT--TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTY 124

Query: 125  SAPLYVDVTKRV----------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN 174
            S+ L+VDV KR           +K     EE     D  KVFIG++PIMLRS  C L   
Sbjct: 125  SSGLFVDVKKRTHEAVDIPGRELKYEMIAEESENDSDSGKVFIGRLPIMLRSKNCYLSDA 184

Query: 175  SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 234
            +E DL +L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  
Sbjct: 185  TESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSAL 244

Query: 235  ESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 294
            E  +R  ST+ V++ +R     G+S + I+ATLPYI+ +IPI+I+FRALG + D +ILEH
Sbjct: 245  EKGSRFISTLQVKLFARE----GNSSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH 300

Query: 295  ICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEM 354
            ICYD  D QM+E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YA++ILQKE 
Sbjct: 301  ICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEF 360

Query: 355  LPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 414
            LPH+   +  E++KA++ GY+I+RLLLCAL RR +DDRDH+G KRLDLAGPLL  LF+ L
Sbjct: 361  LPHITQLEGFESRKAFFLGYMINRLLLCALDRRDQDDRDHFGKKRLDLAGPLLAQLFKTL 420

Query: 415  FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 473
            FRKLTRD+  Y+Q+ V+  KD N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVS
Sbjct: 421  FRKLTRDIFRYMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVS 480

Query: 474  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
            QVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+
Sbjct: 481  QVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 540

Query: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593
            LM  I+VG+   PI+ FL EWG E  E+  P   P+AT++FVNG W G+HR+P  L++TL
Sbjct: 541  LMSCISVGTDPMPIITFLSEWGMEPLEDYIPHQSPEATRVFVNGVWHGVHRNPARLMETL 600

Query: 594  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDIIA 647
            R LRR+ D+N EV +VRDIR KEL+I+TD GR  RPLFIV+      ++ L I+K  I  
Sbjct: 601  RTLRRKGDINPEVSMVRDIREKELKIFTDAGRVYRPLFIVDDDETLNRKELRIRKGHISK 660

Query: 648  LQQRESPE-DGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDL--VQARLHPE 696
            L   E  + +GG        W  L+  G +EYID EEEET +ISM   DL  VQ     E
Sbjct: 661  LMATEYQDIEGGFEDSEEYTWTSLLNDGLVEYIDAEEEETILISMQPEDLEPVQENTFNE 720

Query: 697  E-----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 745
            +            +A T+THCE+HPS+ILGV ASIIPFPDHNQSPRNTYQ+AMGKQAMG+
Sbjct: 721  DDDDLARRIKATHHATTFTHCEVHPSMILGVAASIIPFPDHNQSPRNTYQAAMGKQAMGV 780

Query: 746  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 805
            ++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+I
Sbjct: 781  FLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMI 840

Query: 806  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 865
            MNQSSIDRG FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL  
Sbjct: 841  MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA 900

Query: 866  PGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADG 923
            PG RVSGED+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQ+L+TTN DG
Sbjct: 901  PGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQILITTNQDG 960

Query: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
            L+FVKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSR
Sbjct: 961  LKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSR 1020

Query: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043
            MT+  LIEC++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++
Sbjct: 1021 MTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKK 1080

Query: 1044 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA 1103
            L + IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIA
Sbjct: 1081 LMSQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIA 1140

Query: 1104 HGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYAC 1162
            HGA+ FLKERL + SDA+RVH+C  CGL++ +A L  N FECRGC NK DI Q+HIPYA 
Sbjct: 1141 HGAAAFLKERLMEASDAFRVHICGICGLMSVVAKLNHNQFECRGCDNKIDIYQIHIPYAA 1200

Query: 1163 KLLFQELMAMAIAPRMLT 1180
            KLLFQELMAM I PR+ T
Sbjct: 1201 KLLFQELMAMNITPRLYT 1218


>gi|367005628|ref|XP_003687546.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
 gi|357525850|emb|CCE65112.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
          Length = 1224

 Score = 1521 bits (3937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 737/1208 (61%), Positives = 918/1208 (75%), Gaps = 50/1208 (4%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            EDE   I+ ED+W VIS++F EKGLV QQLDSF++F+  T+Q+I+ E + + +   +QH 
Sbjct: 17   EDENAPISAEDSWTVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHT 76

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
               +SD     Y+ISFG+IY++KPM+ ESDG T  L+P+ ARLRNLTYS+ L+VDV KR 
Sbjct: 77   --TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVNKRT 134

Query: 137  ----------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
                      +K     EE  E  +  KVFIG++P+MLRS  C L   +E DL +L ECP
Sbjct: 135  YEATDVPGRELKYNLIAEESEEDSENDKVFIGRLPVMLRSKNCYLSDATESDLYKLKECP 194

Query: 187  YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
            +D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  ST+ V
Sbjct: 195  FDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQV 254

Query: 247  RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
            ++  R S    SS + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD  D QM+E
Sbjct: 255  KLYGRES----SSTRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLE 310

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YA++ILQKE LPH+   +  E+
Sbjct: 311  MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFES 370

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+ LFRKLT+D+  Y+
Sbjct: 371  RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYM 430

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+STL
Sbjct: 431  QRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSSTL 490

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+   
Sbjct: 491  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 550

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N E
Sbjct: 551  PIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPE 610

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-DGG 658
            V ++RDIR +EL+I+TD GR  RPLFIV+       + L ++K  +  L   E  + +GG
Sbjct: 611  VSMIRDIREQELKIFTDAGRVYRPLFIVDDDDDLGHKELRVRKGHVARLMATEYQDIEGG 670

Query: 659  --------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA------------ 698
                    W  L+ +G +EYID EEEE+ +I+M   DL      PE              
Sbjct: 671  FEDVEEYTWTSLLNEGLVEYIDAEEEESILIAMQPEDLDPVSDEPEAIPDVETDTAKRIR 730

Query: 699  ---YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
               +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMD
Sbjct: 731  AVHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMD 790

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG 
Sbjct: 791  TMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGL 850

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HGSYDKLDDDGL  PG RVSGED+
Sbjct: 851  FRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDGLISPGVRVSGEDI 910

Query: 876  IIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN DGL+FVKVRVR+
Sbjct: 911  IIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRT 970

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC+
Sbjct: 971  TKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECL 1030

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1053
            + KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A IF GPT
Sbjct: 1031 LSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPT 1090

Query: 1054 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 1113
            YYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKER
Sbjct: 1091 YYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKER 1150

Query: 1114 LFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1172
            L + SDA+RVHVC  CGL+  IA L  N FEC+GC NK DI Q+ IPYA KLLFQELMAM
Sbjct: 1151 LMEASDAFRVHVCGICGLMTVIAKLNHNQFECKGCDNKIDIYQIRIPYAAKLLFQELMAM 1210

Query: 1173 AIAPRMLT 1180
             I PR+ T
Sbjct: 1211 NITPRLYT 1218


>gi|190333344|gb|AAS67502.2| DNA-dependent RNA polymerase II second largest subunit, partial
            [Meyerozyma guilliermondii]
          Length = 1219

 Score = 1518 bits (3930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 742/1207 (61%), Positives = 916/1207 (75%), Gaps = 62/1207 (5%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            IT ED W VIS++F+EKGLV QQLDSFDEFI++T+QE+V E + + +   +QH    + D
Sbjct: 18   ITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHT--SEED 75

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                 Y+I+FG+IY+SKP  TE DG T  +FP+ ARLRNLTYS+PLYVD+TKRV+K   +
Sbjct: 76   HENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDN 135

Query: 143  G----------EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 192
                       EE+ + +  TKV++GKVPIMLRS +C L    E +  EL ECPYD GGY
Sbjct: 136  AGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGY 195

Query: 193  FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRT 252
            F+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  S+M +++  R 
Sbjct: 196  FVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKLYGR- 254

Query: 253  SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSL 312
              +  +S + I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD  D QM+E+L+P +
Sbjct: 255  -EEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCV 313

Query: 313  EEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 372
            EE FVIQ ++VALD+IG+RGA +G+ R+KRI+YAK+ILQKE+LP++   +  ET+KA++ 
Sbjct: 314  EEGFVIQEREVALDFIGRRGA-LGIKREKRIQYAKDILQKELLPNITQDEGFETRKAFFL 372

Query: 373  GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 432
            GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLT+D+  Y+Q+CV+N
Sbjct: 373  GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVEN 432

Query: 433  GKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRL 491
             K  NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+STLSHLRR 
Sbjct: 433  DKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRT 492

Query: 492  NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 551
            N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ + PIL FL
Sbjct: 493  NTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYFL 552

Query: 552  EEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRD 611
            EEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR D++ EV ++RD
Sbjct: 553  EEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEVSIIRD 612

Query: 612  IRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG------- 657
            IR KE +I+TD GR  RPLFIV+       K  L ++K  I  L   E  E+        
Sbjct: 613  IREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYATNEFGE 672

Query: 658  -----GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPEEAYAD- 701
                 GW  LV  G +EY+D EEEET MI+MT  DL           Q  L  EE   D 
Sbjct: 673  EEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLEEQELDP 732

Query: 702  -------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
                         T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++T
Sbjct: 733  AKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 792

Query: 749  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
            NY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+IMNQ
Sbjct: 793  NYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 852

Query: 809  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
            SSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  PG 
Sbjct: 853  SSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGI 912

Query: 869  RVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
            RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +F
Sbjct: 913  RVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKF 972

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
            VKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T +GI PD+I+NPHAIPSRMT+
Sbjct: 973  VKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTV 1032

Query: 987  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
              LIEC++ KV++  G EGDA+P TDVT + +SK L + GYQ RGFE MY+GHTG++L A
Sbjct: 1033 AHLIECLLSKVSSLSGLEGDASPLTDVTAEAVSKLLREHGYQSRGFEVMYHGHTGKKLMA 1092

Query: 1047 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 1106
             +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDCMIAHGA
Sbjct: 1093 QVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGA 1152

Query: 1107 SHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLL 1165
            + FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CKNKT+I QVHIPYA KLL
Sbjct: 1153 AGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQVHIPYAAKLL 1212

Query: 1166 FQELMAM 1172
            FQE MAM
Sbjct: 1213 FQESMAM 1219


>gi|255730467|ref|XP_002550158.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
            tropicalis MYA-3404]
 gi|240132115|gb|EER31673.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
            tropicalis MYA-3404]
          Length = 1240

 Score = 1518 bits (3930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 743/1239 (59%), Positives = 932/1239 (75%), Gaps = 72/1239 (5%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            M D Y Y+E        E E ITQED W VIS++F+EKGLV QQLDSFDEF++ ++QE+V
Sbjct: 7    MVDPYGYDE--------EIETITQEDCWTVISSFFQEKGLVSQQLDSFDEFVETSIQELV 58

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
             E + + +   +QH     +D     Y+I FG+IY+SK   TE DG T ++FP+ ARLRN
Sbjct: 59   WEDSHLILDQPAQHT--SVADHKNKRYEIEFGKIYISKTSQTEGDGTTHSVFPQEARLRN 116

Query: 122  LTYSAPLYVDVTKRVIK----KGHDGE---EVTETQDF----TKVFIGKVPIMLRSSYCT 170
            LTYS+PLYVD+TKR  +    K  D E   E  E  D     +KVF+GKVPIMLRS +C 
Sbjct: 117  LTYSSPLYVDMTKRKFESDDNKRKDNELEWEEIEVDDKEGPQSKVFLGKVPIMLRSKFCM 176

Query: 171  LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 230
            L   +E +  EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+
Sbjct: 177  LNGLAEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEI 236

Query: 231  RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            RS  E  +R  S+M +++  R   + G +G+ I+ATLPYI+ +IPI+IVFRALG V D D
Sbjct: 237  RSALEKGSRLISSMQIKLYGRD--EKGVAGRTIKATLPYIKEDIPIVIVFRALGVVPDGD 294

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            ILEHICYD  D QM+E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+IL
Sbjct: 295  ILEHICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDIL 353

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            QKE+LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL GL
Sbjct: 354  QKELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLAGL 413

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FR+LF+KLT+D+  Y+Q+CV+N  D NL  A+K++TIT GL+YSLATGNWG Q  A  +R
Sbjct: 414  FRILFKKLTKDIYNYMQRCVENDSDFNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSSR 473

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLV
Sbjct: 474  AGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 533

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNL+LM  I+VGS++ PIL FL ++G E  E+  P+  P +T+IFVNG WVG+HRDP  L
Sbjct: 534  KNLSLMTCISVGSSSEPILGFLRDFGLEVLEDYVPSNAPDSTRIFVNGVWVGVHRDPAQL 593

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK 642
            V  +R LRR  D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L+I K
Sbjct: 594  VDYVRDLRRSGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNEDSPTKGDLMITK 653

Query: 643  RDIIAL-------------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 689
              I  L             ++        W  LV++G +EY+D EEEET MI+M+ +D+ 
Sbjct: 654  EHIRKLVAEDMDDDELEEDEEGGESRKYTWSSLVSEGIVEYVDAEEEETIMIAMSPDDVK 713

Query: 690  QA-----------------------RLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPD 725
             +                       R+ P   +   TYTHCEIHPS+ILGV ASIIPFPD
Sbjct: 714  ASKSTMSESEQQELQLQEQELDPAKRIKPTTSSNTHTYTHCEIHPSMILGVAASIIPFPD 773

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG
Sbjct: 774  HNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAG 833

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
             NA+VAIACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G  + E F +P RS
Sbjct: 834  QNAVVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKLLETFEKPSRS 893

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS-RYTRRDHSIS 903
            +T+ ++HG+Y+KLD+DGL  PG RVSGED+IIGKTTPI  D E  GQ +  +++RD S  
Sbjct: 894  DTLRLKHGTYEKLDEDGLIAPGIRVSGEDIIIGKTTPIPADTEELGQRTLHHSKRDASTP 953

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
            LR +E+G+VDQVLLTTN DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP
Sbjct: 954  LRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMP 1013

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023
            ++ EGI PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + I+K L 
Sbjct: 1014 FSAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDVTAEAIAKLLR 1073

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
            + GYQ RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP E
Sbjct: 1074 EHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVE 1133

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSF 1142
            GRSRDGGLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN F
Sbjct: 1134 GRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQF 1193

Query: 1143 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            ECR CKNKT+I Q+HIPYA KLLFQELMAM I+PR+ T+
Sbjct: 1194 ECRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1232


>gi|388855609|emb|CCF50832.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Ustilago
            hordei]
          Length = 1241

 Score = 1518 bits (3929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 733/1204 (60%), Positives = 921/1204 (76%), Gaps = 46/1204 (3%)

Query: 15   EEEDE-EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPES 73
            E+ DE  EEITQED W VI A+FEEKGLVR QLDSF+EF+ NT+QE+V+E   + +    
Sbjct: 43   EDGDEYSEEITQEDCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSD 102

Query: 74   QHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT 133
            QH+ G   D     Y+I FGQIYL+KP MTESDG +A LFP+ AR RNLTYSA L+VDVT
Sbjct: 103  QHS-GHAEDKTRR-YEIEFGQIYLNKPTMTESDGSSAQLFPQEARFRNLTYSASLFVDVT 160

Query: 134  KRVIKKGHDGEEV------------TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 181
            ++V+ +  D  ++            T+ ++  ++FIGKVPIML+S +C L    ++    
Sbjct: 161  QKVLVQSEDEVDLNGDPAWIPEYGKTDVEE-EQIFIGKVPIMLKSDFCWLKGLDDEMSYS 219

Query: 182  LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP 241
            L ECPYD GGYF+INGSEKVLIAQE+M+ NHVYVF K  P    ++AE+RS  E   +  
Sbjct: 220  LNECPYDAGGYFVINGSEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTI 279

Query: 242  STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            STM V++ SR   K  ++   IRATLPYIR +IPI+IVFRALG V D+++L+HICYDF D
Sbjct: 280  STMQVKLFSRNKEK--TANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFND 337

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
            T M+E+L+P +EEAFVIQ++ VALD+IG+RG T G++R KR  YA+EILQKEMLPH+ T 
Sbjct: 338  TPMLEMLKPCIEEAFVIQDRDVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTS 397

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            +   TKKAY+FGY+IHRLLL AL RR  DDRDH+G KR+DL GPL+  LFRMLFRK+TRD
Sbjct: 398  EGSNTKKAYFFGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRD 457

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            V  ++QKCV+  ++ ++Q A+K+ TIT+GL+YSLATGNWG Q  A   +AGVSQVLNR  
Sbjct: 458  VYRHLQKCVEEHREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFA 517

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  +TV
Sbjct: 518  FASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTV 577

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            G+ + PI+EFLEE+G ++  ++  A   +ATKIFVNG W+G H DP  LV TLR LRR+ 
Sbjct: 578  GTPSAPIVEFLEEFGLDSLVDMQLAH-AKATKIFVNGVWMGTHDDPAQLVDTLRDLRRKD 636

Query: 601  DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ--RLLIKKRDIIALQQR--ESPED 656
            D++ EV VVRDIR +ELRIYTD  R  RP+FIV      LLIKKR +  + Q   ++ E+
Sbjct: 637  DISHEVSVVRDIRERELRIYTDASRVLRPVFIVNPHDMTLLIKKRHVEMIGQTIPQTGEE 696

Query: 657  GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----------LHPEEAYA------ 700
              W  L+ +G IEY+D EEEE+ +I M+  DL Q+R          L+  +  A      
Sbjct: 697  FRWTHLIQEGVIEYLDAEEEESVLICMSTTDLEQSREYKARNGQINLNSADPSARLKSVH 756

Query: 701  ----DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 756
                DT+THCEIHP+++LG+CASI+PFPDHNQSPRN YQSAMGKQA+GI ++N+  R D+
Sbjct: 757  TIAPDTWTHCEIHPAMVLGICASIVPFPDHNQSPRNVYQSAMGKQAIGIPISNFISRADS 816

Query: 757  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 816
            + ++LYYPQKPL TTR+MEHL FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG F
Sbjct: 817  MNHILYYPQKPLGTTRSMEHLRFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLF 876

Query: 817  RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 876
            RSL++R Y  EEKK+G +  E+F +P R  T+ M+HG+YDK+D DGL  PGTRVSG+DVI
Sbjct: 877  RSLYYRGYMAEEKKVGVMQLEEFEKPHRDTTIRMKHGTYDKIDADGLCAPGTRVSGDDVI 936

Query: 877  IGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 934
            IGKT P+  D E  G  S+ +T++D SISL+ +E G++DQVLLTTN+ G +FVKVRVR+ 
Sbjct: 937  IGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSHGNKFVKVRVRNS 996

Query: 935  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 994
            R+PQ GDKF+SRHGQKGT+G+TY QEDMP++ EG+TPDII+NPHAIPSRMTIG L+EC++
Sbjct: 997  RVPQTGDKFASRHGQKGTIGITYRQEDMPFSTEGVTPDIIINPHAIPSRMTIGHLVECLL 1056

Query: 995  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1054
             KVAA  G+EGDATPFT++TV+ +S  L   GYQ RG E MY+GHTGR+L A ++LGPTY
Sbjct: 1057 SKVAALSGQEGDATPFTELTVEAVSSILRGLGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 1116

Query: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERL 1114
            YQRLKHMVDDKIHSR RGPVQILTRQP EGRSR GGLRFGEMERDCMIAHG + FLKER+
Sbjct: 1117 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERDCMIAHGIAGFLKERM 1176

Query: 1115 FDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1174
            FD SD YR+HVC+ CGL A+ANLKK ++ECR C+N+T I Q+HIPYA KLL QELM++ +
Sbjct: 1177 FDASDPYRIHVCDLCGLTALANLKKGTYECRSCRNRTAISQIHIPYAAKLLMQELMSVNV 1236

Query: 1175 APRM 1178
            A R+
Sbjct: 1237 ALRL 1240


>gi|45198922|ref|NP_985951.1| AFR404Cp [Ashbya gossypii ATCC 10895]
 gi|51701974|sp|Q753Q4.1|RPB2_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|44984951|gb|AAS53775.1| AFR404Cp [Ashbya gossypii ATCC 10895]
 gi|374109181|gb|AEY98087.1| FAFR404Cp [Ashbya gossypii FDAG1]
          Length = 1222

 Score = 1517 bits (3927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 731/1202 (60%), Positives = 919/1202 (76%), Gaps = 50/1202 (4%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            IT ED+W VISA+F EKGLV QQLDSF++FI  T+Q+++ E + + +   +QH    ++D
Sbjct: 21   ITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHT--TEAD 78

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK--- 139
                 Y+ISFG+IYL+KP MTESDG +  ++P+ ARLRNLTY++ L+V++ KR  +    
Sbjct: 79   NISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDI 138

Query: 140  -GHDG-----EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF 193
             G D      +E +E  +  K+FIG+VPIMLRS YC L   SE DL  L ECP+D GGYF
Sbjct: 139  PGRDLKYEIIQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYF 198

Query: 194  IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS 253
            IINGSEKVLIAQE+ + N V VFKK  P+  +++AE+RS  E  +R  ST+ V++  R  
Sbjct: 199  IINGSEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGRE- 257

Query: 254  AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLE 313
               GS+ + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD  D QM+E+L+P +E
Sbjct: 258  ---GSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVE 314

Query: 314  EAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 373
            E FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  E++KA++ G
Sbjct: 315  EGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLG 374

Query: 374  YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG 433
            Y+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LFRKLTRD+  ++Q+ V+  
Sbjct: 375  YMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEA 434

Query: 434  KDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
            KD NL+ A+KA TIT+GLKY+LATGNWG Q  A  +RAGVSQVLNR TY+STLSHLRR N
Sbjct: 435  KDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTN 494

Query: 493  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
            +PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+   PI+ FL 
Sbjct: 495  TPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPIITFLN 554

Query: 553  EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
            EWG E  E+  P   P AT++FVNG W GIHR+P  LV T+R+LRR+ D+  EV +VRDI
Sbjct: 555  EWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGDITAEVSIVRDI 614

Query: 613  RLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDIIALQQRESPE-DGG------ 658
            R KEL+I+TD GR  RPLF+V   +       L ++K  I  L   E  + +GG      
Sbjct: 615  REKELKIFTDAGRVYRPLFVVADTQHADGHKDLKVRKGHIRKLMLTEYQDIEGGFEDEDI 674

Query: 659  ---WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQARLHPEEA-----------YAD 701
               W  L+  G +EYID EEEET +I+M   DL   V   + P +            +++
Sbjct: 675  NYTWTSLLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQTVDPSDELDPARRIKAIHHSN 734

Query: 702  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
            T+THCEIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +L
Sbjct: 735  TFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANIL 794

Query: 762  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
            YYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSID G FRSLFF
Sbjct: 795  YYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLFRSLFF 854

Query: 822  RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
            RSY D+EK++G  + E F +P R+NT+ M+HG+Y+KLDDDGL  PG RVSG+D+IIGKTT
Sbjct: 855  RSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYEKLDDDGLIAPGVRVSGDDIIIGKTT 914

Query: 882  PISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            PI  D E  GQ + + ++RD S  LR +E G+VDQVL+TTN +GL+FVKVRVR+ ++PQI
Sbjct: 915  PIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQI 974

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHAIPSRMT+  LIEC++ KVAA
Sbjct: 975  GDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAA 1034

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
              G EGDA+PFTD+TVD ISK L + GYQ RGFE MYNGHTG++L A IF GPTYYQRL+
Sbjct: 1035 LSGNEGDASPFTDITVDGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLR 1094

Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
            HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL + SD
Sbjct: 1095 HMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASD 1154

Query: 1120 AYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
            A+RVH+C  CGL+  +A LK N FECRGCKNK DI QVHIPYA KLLFQELMAM IAPR+
Sbjct: 1155 AFRVHICGICGLMTVVAKLKHNQFECRGCKNKIDIYQVHIPYAAKLLFQELMAMNIAPRL 1214

Query: 1179 LT 1180
             T
Sbjct: 1215 YT 1216


>gi|301616295|ref|XP_002937598.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Xenopus
            (Silurana) tropicalis]
          Length = 1151

 Score = 1515 bits (3922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 752/1191 (63%), Positives = 904/1191 (75%), Gaps = 58/1191 (4%)

Query: 6    YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2    YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62   APPIDLQAEAQHTTGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124  YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            YSAPLYVD+TK V+K   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120  YSAPLYVDITKTVVK---EGEEQIQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY AE RS  E+ +RP S+
Sbjct: 176  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTAECRSCLENSSRPTSS 234

Query: 244  MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235  IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
             +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  
Sbjct: 295  PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355  DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415  VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475  FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535  GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+K+R I  L++RE   +  W
Sbjct: 595  DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREY-NNYSW 653

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPSMILGVCAS 709

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780  RQLPAGINAIVAIACYSGYNQEDSV-----IMNQSSIDRG--FFRSLFFRSYRDEEKKMG 832
            R+LPAGIN+IVA                  I   ++I        S+F+RSY+++E K G
Sbjct: 770  RELPAGINSIVAXXXXXXXXXXXXXXXXXHISLATNIKHPSECQESVFYRSYKEQESKKG 829

Query: 833  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQG 890
               +E F +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE + 
Sbjct: 830  FDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELES 889

Query: 891  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
               RYT+RD S  LR SETG+VDQV++T N +G +F K+R                    
Sbjct: 890  TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIR-------------------- 929

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
                      DMP+T EGITPDII+NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATPF
Sbjct: 930  ----------DMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPF 979

Query: 1011 TD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 1069
             D V V  IS  L   GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR
Sbjct: 980  NDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1039

Query: 1070 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 1129
             RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  C
Sbjct: 1040 ARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLC 1099

Query: 1130 GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            GL+AIAN + +++ECRGC+NKT I  V +PYACKLLFQELM+M+IAPRM+T
Sbjct: 1100 GLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT 1150


>gi|313227690|emb|CBY22838.1| unnamed protein product [Oikopleura dioica]
          Length = 1187

 Score = 1514 bits (3921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 732/1196 (61%), Positives = 905/1196 (75%), Gaps = 18/1196 (1%)

Query: 5    DYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
            +YD E     ++ +       E  W +I+AYF+EKGLVRQQL+SFDEFI  ++Q IV+ES
Sbjct: 2    NYDDELGSFGDQNEISPNTWHESCWTIITAYFDEKGLVRQQLESFDEFITMSVQRIVEES 61

Query: 65   ADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 124
              IE++ E  +N G+  +   T Y+I F QIYLSKP   E       L P  ARLRNLTY
Sbjct: 62   PVIELQSEPNYNAGEPEE--PTKYQIKFEQIYLSKPTHWEVGTGPNPLMPNEARLRNLTY 119

Query: 125  SAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 184
             APLYVD+ +  I+     +     +   K+FIG++PIMLRS YC L   S++DLTEL E
Sbjct: 120  CAPLYVDINRTTIRSD---DPRPHEEKHEKIFIGQIPIMLRSEYCLLSGLSDRDLTELNE 176

Query: 185  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTM 244
            CP D GGYF+INGSEKV+IAQEKM+ N VYVF+K+  +KY   AE RS  E+ +RP ST+
Sbjct: 177  CPLDPGGYFVINGSEKVVIAQEKMANNTVYVFEKKD-SKYELTAECRSCLENSSRPTSTI 235

Query: 245  FVRMLSR---TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            ++ +L+R   T  K  + G+ I A LPY++ + PIIIVFRALGFV+D+DILEHI YDF D
Sbjct: 236  WINLLARSGGTGVKKSAIGRRIAAILPYVKQDTPIIIVFRALGFVSDRDILEHIVYDFDD 295

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
              MME+++PS++EAFVIQ + VALD+IGKRGA  GVTR+KR+KYAKEILQKE+LPHVG  
Sbjct: 296  PDMMEMVKPSIDEAFVIQEEAVALDFIGKRGARPGVTREKRMKYAKEILQKELLPHVGIS 355

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            ++CETKKAY+ GY+++R+L   LGRR EDDRDHYGNKR+DLAGPLL  LFR LF+KLT+D
Sbjct: 356  EYCETKKAYFLGYMVNRILQAGLGRRGEDDRDHYGNKRMDLAGPLLAFLFRSLFKKLTKD 415

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
             R   QK ++ GK +N+  AIK K IT GLKYSLATGNWG Q  A+  R GVSQVLNRLT
Sbjct: 416  ARIAAQKEIEKGKPMNVLTAIKTKIITDGLKYSLATGNWGDQQKASQCRPGVSQVLNRLT 475

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            YAS+LSHLRRLNSP+GR+GKLAKPRQLH++QWGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 476  YASSLSHLRRLNSPVGRDGKLAKPRQLHSTQWGMVCPAETPEGHAVGLVKNLALMSYISV 535

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GS   PILEFLEEW  EN EEI+P  I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++
Sbjct: 536  GSQPSPILEFLEEWSMENLEEITPNSISDATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 595

Query: 601  D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            D + +EV +VRDIR +E+RIYTD GR  RPL IVE QRLL+KK D +A+ +     +  W
Sbjct: 596  DIIVSEVSMVRDIRNREIRIYTDAGRICRPLLIVEDQRLLLKK-DHLAMLKDPEYSNYSW 654

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
             +L+  G +EYIDT EEET M +MT +++ +     E AY  +YTHCEIHP++ILGVCAS
Sbjct: 655  TELIKAGVVEYIDTLEEETIMCAMTPDEVKKTD---EMAYCRSYTHCEIHPAMILGVCAS 711

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            I+PFPDHNQSPRNTYQSAMGKQA+G++VTN+Q RMDT+  + +YPQKPL  TR+ME+L F
Sbjct: 712  IVPFPDHNQSPRNTYQSAMGKQAVGVFVTNFQIRMDTMGNICFYPQKPLCVTRSMEYLRF 771

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
             +LPAGIN IVA++CY+GYNQEDS+IMN +S+DRGF RS+++R YRD E K     +E F
Sbjct: 772  SELPAGINTIVALSCYTGYNQEDSLIMNMASLDRGFHRSIYYRGYRDTENKKILDPEETF 831

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTR 897
             +PDR+ T GMRH  YDKL+DDGL  PGTR+SG+DV+IGKT  +    D     A +YT+
Sbjct: 832  EKPDRATTQGMRHAMYDKLEDDGLIAPGTRISGDDVMIGKTIALQDGDDALDPTAKKYTK 891

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            +D S+  + +E G++D V++T N DG +FVK+R+RSVRIP++GDKF+SRHGQKGT G+  
Sbjct: 892  KDASLFAKPTEKGIIDSVMVTINEDGYKFVKIRLRSVRIPEVGDKFASRHGQKGTNGIML 951

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT-DVTVD 1016
              EDM +T +G+ PD+IVNPHAIPSRMTIG L EC+  KV A  G+ GDATPF   VTV 
Sbjct: 952  RCEDMLFTPDGMQPDLIVNPHAIPSRMTIGHLFECLTSKVGAIKGEIGDATPFNPSVTVQ 1011

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             +S  LH+  YQ RG E +Y+G TGR++   +F GPTYYQRLKHMV+DKIHSR RGPVQ+
Sbjct: 1012 KVSDILHEYEYQQRGNEVLYSGFTGRKMNTQVFFGPTYYQRLKHMVNDKIHSRARGPVQL 1071

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            L RQP EGRSRDGGLRFGEMERDC IAHGAS FLKERLF+ SD YRVHVC  CGLI +AN
Sbjct: 1072 LNRQPMEGRSRDGGLRFGEMERDCQIAHGASQFLKERLFEVSDPYRVHVCNLCGLICVAN 1131

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKK 1192
            L  NSFECR C NKT+I QV +PYACKLLFQELM+M IAPRM+   D +  K  K+
Sbjct: 1132 LTSNSFECRSCSNKTNISQVRMPYACKLLFQELMSMQIAPRMMCLTDAEMKKASKR 1187


>gi|50303683|ref|XP_451784.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640916|emb|CAH02177.1| KLLA0B05577p [Kluyveromyces lactis]
          Length = 1221

 Score = 1513 bits (3917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 737/1223 (60%), Positives = 926/1223 (75%), Gaps = 59/1223 (4%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            ED Y Y+E        EE  I+ ED+W VISA+F EKGLV QQLDSF++FI  T+Q+++ 
Sbjct: 7    EDPYGYDE--------EEAAISAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLIL 58

Query: 63   ESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
            E + + +   +QH    ++D     Y+ISFG+IYL+KP MTESDG +  ++P+ ARLRNL
Sbjct: 59   EDSTLILEQLAQHT--TETDNISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNL 116

Query: 123  TYSAPLYVDVTKRV----------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLY 172
            TY++ L+V++ KR           +K     EE  E ++  K+FIG+VPIMLRS YC L 
Sbjct: 117  TYASGLFVEIQKRTYQAIDIPGRDLKYEIITEESEENEENNKIFIGRVPIMLRSKYCLLD 176

Query: 173  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 232
              +E DL  L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK  P+  +++AE+RS
Sbjct: 177  DLTESDLYRLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRS 236

Query: 233  MAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 292
              E  +R  ST+ V++  R     GS+ + I+ATLPYI+ +IPI+I+FRALG + D +IL
Sbjct: 237  ALEKGSRFISTLQVKLYGRE----GSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEIL 292

Query: 293  EHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQK 352
            EHICYD  D QM+E+L+P +EE FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQK
Sbjct: 293  EHICYDVNDWQMLEMLKPCVEEGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQK 352

Query: 353  EMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 412
            E LPH+   +  E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+
Sbjct: 353  EFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFK 412

Query: 413  MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAG 471
             LFRKLTRD+  ++Q+ V+  KD NL+ A+KA TIT+GLKY+LATGNWG Q  +  +RAG
Sbjct: 413  TLFRKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKSMSSRAG 472

Query: 472  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 531
            VSQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKN
Sbjct: 473  VSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKN 532

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 591
            L+LM  I+VG+   PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV 
Sbjct: 533  LSLMSCISVGTDPLPIITFLNEWGMEPLEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVD 592

Query: 592  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDI 645
            T+R+LRR+ D+  EV +VRDIR KEL+I+TD GR  RPLFIV+      ++ L +KK  +
Sbjct: 593  TIRKLRRKGDITPEVSIVRDIREKELKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHV 652

Query: 646  IALQQRESPE-DGG----------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 694
              L   E  + +GG          W  L+ +G +EYID EEEET +I+M   DL  A L 
Sbjct: 653  RKLMLTEYQDIEGGFDDEEEMNYTWTSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLP 712

Query: 695  PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 740
              ++  D               +THCEIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGK
Sbjct: 713  VADSEDDLDPARRIRAIHNSNIFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGK 772

Query: 741  QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 800
            QAMG+++TNY  RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQ
Sbjct: 773  QAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQ 832

Query: 801  EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 860
            EDS+IMNQSSIDRG FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+YDKLDD
Sbjct: 833  EDSMIMNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDD 892

Query: 861  DGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLT 918
            DGL  PG RVSG+D+IIGKTTPI  D E  GQ + + ++RD S  LR +E G+VDQVL+T
Sbjct: 893  DGLIAPGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLIT 952

Query: 919  TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 978
            TN +GL+FVKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPH
Sbjct: 953  TNQEGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPH 1012

Query: 979  AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1038
            AIPSRMT+  LIEC++ KVAA  G EGDA+PFTD+TVD IS+ L + GYQ RGFE MYNG
Sbjct: 1013 AIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNG 1072

Query: 1039 HTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1098
            HTG++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMER
Sbjct: 1073 HTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMER 1132

Query: 1099 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVH 1157
            DCMIAHGA+ FLKERL + SDA+RVH+C  CGL++ +A LK N FECR CKNK DI QVH
Sbjct: 1133 DCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVH 1192

Query: 1158 IPYACKLLFQELMAMAIAPRMLT 1180
            IPYA KLLFQELMAM IAPR+ T
Sbjct: 1193 IPYAAKLLFQELMAMNIAPRLYT 1215


>gi|323449030|gb|EGB04921.1| hypothetical protein AURANDRAFT_38738 [Aureococcus anophagefferens]
          Length = 1147

 Score = 1513 bits (3916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 712/1127 (63%), Positives = 884/1127 (78%), Gaps = 32/1127 (2%)

Query: 57   MQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKA 116
            MQE+VD+S ++ ++PE+Q+ PGQ+S    + + + F Q+Y+SKP  TE DG T+ +FP  
Sbjct: 1    MQELVDDSGELTVKPETQYTPGQES-VTRSTFAVLFNQVYVSKPTATERDGTTSNMFPHE 59

Query: 117  ARLRNLTYSAPLYVDVTK----RVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLY 172
            ARLRN+TYS+P+YVD++     R+     DG   T   D  K F+G VPIMLRS +C L 
Sbjct: 60   ARLRNMTYSSPMYVDISVNSACRIRMLAEDGS--THRIDSPKEFLGYVPIMLRSRFCVLA 117

Query: 173  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 232
              S+K+L ELGEC YDQGGYF+INGSEKV++AQE+MS NHVY F+K+QP+KY++V E RS
Sbjct: 118  DKSDKELCELGECIYDQGGYFVINGSEKVVVAQERMSNNHVYCFRKKQPHKYSWVVECRS 177

Query: 233  MAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 292
              E   RP ST++++M ++ + +G S G  IR TLPYIR ++P+IIVFRALGFVAD+DIL
Sbjct: 178  HVEHGARPTSTIYMQMYNK-AGRGQSQGNQIRMTLPYIRVDVPVIIVFRALGFVADRDIL 236

Query: 293  EHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQK 352
            EH+ YDF DT+MME LRPSL+EAFV+QNQ +ALD+IG+RG+   + R KR++YAKE+LQK
Sbjct: 237  EHVVYDFSDTEMMEQLRPSLDEAFVVQNQTIALDFIGRRGSATNIGRSKRVQYAKELLQK 296

Query: 353  EMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 412
            E+LPHVGT +  +TKKA++ GYI+H+LL+C+L R  EDDRDHYG KRLDLAGPLLGGLFR
Sbjct: 297  EVLPHVGTEEQSDTKKAFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFR 356

Query: 413  MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGV 472
            MLFRKLT+DV AY+QKC+D G+D NL  AIK++ IT GL+YSLATGNWG    A +RAGV
Sbjct: 357  MLFRKLTKDVLAYLQKCIDEGRDFNLASAIKSRVITDGLRYSLATGNWGDRKDA-SRAGV 415

Query: 473  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 532
            SQVLNRLTYASTLSHLRRLN+P+GREGK AKPRQLHN+ WG +CPAETPEGQA GLVKNL
Sbjct: 416  SQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNL 475

Query: 533  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLV 590
            ALM Y++VGS   PILEFLEEW  EN EEISP  I  P  TKIFVNG WVG+HRDP  L 
Sbjct: 476  ALMSYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLE 535

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK---QRLLIKKRDIIA 647
             TLR LRR++D++ EV VVRDI+ KELRIYTD GR  RPL I+ K   Q L ++K  I  
Sbjct: 536  STLRSLRRQIDIDPEVSVVRDIKEKELRIYTDAGRVCRPLLIISKFSRQELRLRKSHIQK 595

Query: 648  LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
            L   E     GW  L+ KG +E +DTEEEETTMI+M  +DL        E Y+ TYTHCE
Sbjct: 596  LVNGEL----GWTQLLVKGLVELVDTEEEETTMIAMVPSDL-------NETYSSTYTHCE 644

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+C SIIPFPDHNQSPRNTYQSAMGKQAMGIY +N+Q RMDTL++VL+YPQKP
Sbjct: 645  IHPSMILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFQQRMDTLSHVLHYPQKP 704

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTRAMEHLHFR+LP+G+NAIVAI CY+GYNQEDS+IMNQ++IDRG FRS F+R+Y D+
Sbjct: 705  LATTRAMEHLHFRELPSGVNAIVAIMCYTGYNQEDSLIMNQAAIDRGLFRSTFYRTYVDQ 764

Query: 828  E--KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
            E  + +G    E F RP R     MRHGSYDK+D DGL  PG RVSG D++IGKT P + 
Sbjct: 765  ESIRGLGEAFHETFERPTRDQCTAMRHGSYDKVDCDGLVAPGLRVSGADILIGKTAPTTP 824

Query: 886  DEAQGQAS--RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
                G  +  ++T++D S ++R +E+G+VDQV+L+TN +G++F KVR R++RIPQIGDKF
Sbjct: 825  LGMDGNLNHCQFTKQDSSTAMRPNESGLVDQVMLSTNQEGMKFTKVRTRTIRIPQIGDKF 884

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            +SRHGQKGT+GMTY+QEDMPWT +G++PDI+VNPHAIPSRMTIG L+EC+  KV A  GK
Sbjct: 885  ASRHGQKGTIGMTYSQEDMPWTRDGVSPDIVVNPHAIPSRMTIGHLVECLQSKVGALTGK 944

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            EGDATPFTDV+VD I+  LH+ GY   G E MY+GHTGR + A +FLGPT+YQRLKH+VD
Sbjct: 945  EGDATPFTDVSVDQIAGVLHELGYHRHGNEVMYSGHTGRMIHAKVFLGPTFYQRLKHLVD 1004

Query: 1064 DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 1123
            DKIH+R RGPV +LTRQP EGR+RDGGLR GEMERDC+++HG S FL++R+F  SD Y V
Sbjct: 1005 DKIHARSRGPVTMLTRQPMEGRARDGGLRMGEMERDCLVSHGVSSFLRDRMFANSDPYAV 1064

Query: 1124 HVCEHCGLIAIANLKKNSFEC--RGCKN-KTDIVQVHIPYACKLLFQ 1167
            HVC  CG+IA A+L+K+ + C  + C++ K  IV+VHIPYACKLLFQ
Sbjct: 1065 HVCTSCGMIAHADLRKHLYWCNNKDCQHAKARIVRVHIPYACKLLFQ 1111


>gi|320582153|gb|EFW96371.1| DNA-directed RNA polymerase II [Ogataea parapolymorpha DL-1]
          Length = 1275

 Score = 1508 bits (3904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 737/1262 (58%), Positives = 931/1262 (73%), Gaps = 102/1262 (8%)

Query: 19   EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78
            E E IT ED W VIS++FEEKGLV QQLDSF+EFI++++QE+V E   + +   +QH   
Sbjct: 12   EYEMITTEDCWTVISSFFEEKGLVSQQLDSFEEFIESSIQELVLEDKKLILDQPAQHI-- 69

Query: 79   QQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
             + D     Y+I+FG I+LSKP  TE+DG T+TL P+ ARLRNLTYSAPLYV++ K+++K
Sbjct: 70   TEDDDVNRRYEITFGDIFLSKPSQTEADGTTSTLLPQEARLRNLTYSAPLYVEM-KKMVK 128

Query: 139  KGHDGEEVTETQ------------------------------------------------ 150
            +  D ++V  TQ                                                
Sbjct: 129  ESIDDDDVVTTQVVWYREGEITRYRNGEIEQDEMVIMPPNFDDDSDDIIEERHGIKVHRS 188

Query: 151  --DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
              +   +FIGKVPIML+S +C+LY  SE +L E+ ECP+D GGYFIINGSEKVLIAQE+ 
Sbjct: 189  GAESQTIFIGKVPIMLKSKFCSLYGLSEDELYEIRECPFDMGGYFIINGSEKVLIAQERS 248

Query: 209  STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA---KGGSSGQYIRA 265
            + N V VFKK  P+  +++AE+RS  E  +R  S++ V+ L+R  A   K G  G+ I+A
Sbjct: 249  AANIVQVFKKSPPSPVSHIAELRSALEKGSRLISSIQVK-LARGGASNFKSGGVGRSIKA 307

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
            TLPYI+ +IPI+IVFRALG + D DIL+HICYD  D QM+E+L+P +EE F+IQ+Q+VAL
Sbjct: 308  TLPYIKADIPIVIVFRALGVIEDGDILQHICYDENDWQMLEMLKPCIEEGFLIQSQEVAL 367

Query: 326  DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 385
            DYIG+RG ++G+ +++RI+YAK+ILQ+E LPH+      ET KAY+ GYI++RLLLCAL 
Sbjct: 368  DYIGRRGNSIGIKKERRIQYAKDILQREFLPHISQDSGYETNKAYFLGYIVNRLLLCALE 427

Query: 386  RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
            R+  DDRDH+G KRLDLAGPLL  LFR+LFRKL+RD+  Y+Q+C++ G D N+  A+K+ 
Sbjct: 428  RKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRYMQRCIERGDDFNIVSAVKSN 487

Query: 446  TITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
            TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY+STLSHLRR N+PIGR+GKLAKP
Sbjct: 488  TITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKP 547

Query: 505  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 564
            RQLHN+ WG++CPAETPEGQACGLVKNL+LM   +VGSA+ PI   LEEWG E   +  P
Sbjct: 548  RQLHNTHWGLVCPAETPEGQACGLVKNLSLMACASVGSASEPITYLLEEWGLEPLSDYEP 607

Query: 565  AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYG 624
                 AT++F+NG WVG HRDP MLV+T+R+LRR   ++ EV ++RDIR +E +I+TD G
Sbjct: 608  QEHKNATRVFLNGNWVGTHRDPAMLVETMRQLRRSGTISPEVSLIRDIREREFKIFTDAG 667

Query: 625  RCSRPLFIVE-------KQRLLIKK--------RDIIALQQRESPEDGG----------- 658
            R  RPLFIV+       K  L + K        R++  + Q E  +D G           
Sbjct: 668  RIYRPLFIVDNDPDSEHKGELKLTKEHCRKILDREVEEIVQDEEFDDEGQPLGPVQRVFG 727

Query: 659  WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----------LHPEE-----AYADTY 703
            W  L++ G IEY+D EEEET +I+M+  DL+ +           L P +       A ++
Sbjct: 728  WDSLLSNGIIEYLDAEEEETVLIAMSPEDLISSASAEVQKAERDLDPAKRIKNVVKAHSF 787

Query: 704  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYY
Sbjct: 788  THCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYY 847

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPL  T++ME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLFFRS
Sbjct: 848  PQKPLAKTQSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 907

Query: 824  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 883
            Y D+E++ G  V E+F +P RS+T+G + G+Y+KLDDDGL  PG RVSG+D+IIGKT PI
Sbjct: 908  YMDQERRSGISVVEEFEKPMRSSTLGFKQGTYEKLDDDGLIAPGVRVSGDDIIIGKTVPI 967

Query: 884  SQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 941
              D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTNA+GL+F KVR+R+ ++PQIGD
Sbjct: 968  PPDTEELGQRTKYHTKRDASTPLRTTESGIVDQVLLTTNAEGLKFAKVRMRTTKVPQIGD 1027

Query: 942  KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1001
            KF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPSRMT+  LIEC++ KVA+  
Sbjct: 1028 KFASRHGQKGTIGITYRHEDMPFTAQGIVPDLIINPHAIPSRMTVAHLIECLLSKVASMR 1087

Query: 1002 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 1061
            G EGDATPFTD+TVD +SK L + GYQ RGFE MYNGHTG++L A +F GPTYYQRL+HM
Sbjct: 1088 GYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHM 1147

Query: 1062 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 1121
            VDDKIH+R RGP Q LTRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERL D SDA+
Sbjct: 1148 VDDKIHARARGPYQNLTRQPMEGRARDGGLRFGEMERDCMIAHGAAGFLKERLMDSSDAF 1207

Query: 1122 RVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            RVH+C  CGL++ IANLKKN FEC+ CKNKT+I Q+HIPYA KLLFQELM+M IAPR+ T
Sbjct: 1208 RVHICGICGLMSVIANLKKNQFECKSCKNKTNIYQIHIPYAAKLLFQELMSMNIAPRLYT 1267

Query: 1181 KE 1182
            ++
Sbjct: 1268 QK 1269


>gi|343425328|emb|CBQ68864.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Sporisorium
            reilianum SRZ2]
          Length = 1242

 Score = 1507 bits (3901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 725/1197 (60%), Positives = 908/1197 (75%), Gaps = 49/1197 (4%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            I+QED W VI A+FEEKGLVR QLDSF+EF+ NT+QE+V+E   + +    QH+ G   D
Sbjct: 53   ISQEDCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHS-GHAED 111

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                 Y+I FGQIYL+KP MTESDG +A LFP+ AR RNLTYSA L+VDVT++V+ + HD
Sbjct: 112  KTRR-YEIEFGQIYLNKPTMTESDGSSAQLFPQEARFRNLTYSASLFVDVTQKVLVQSHD 170

Query: 143  --------------GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
                          G+   E Q   ++FIGKVPIML+S +C L    ++    L ECPYD
Sbjct: 171  EVDLNGDPAWVPEHGKTDVEEQ---QIFIGKVPIMLKSDFCWLKGLDDEMSYSLNECPYD 227

Query: 189  QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
             GGYF+INGSEKVLIAQE+M+ NHVYVF K  P    ++AE+RS  E   +  STM V++
Sbjct: 228  AGGYFVINGSEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKL 287

Query: 249  LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
             SR   K  ++   IRATLPYIR +IPI+IVFRALG V D+++L+HICYDF DT M+E+L
Sbjct: 288  FSRNKEK--TANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEML 345

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            +P +EEAFVIQ++ VALD+IG+RG T G++R KR  YA+EILQKEMLPH+ T +   TKK
Sbjct: 346  KPCIEEAFVIQDRDVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTSEGSNTKK 405

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            AY+FGY+IHRLLL AL RR  DDRDH+G KR+DL GPL+  LFRMLFRK+TRDV  ++QK
Sbjct: 406  AYFFGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQK 465

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSH 487
            CV+  ++ ++Q A+K+ TIT+GL+YSLATGNWG Q  A   +AGVSQVLNR  +ASTLSH
Sbjct: 466  CVEEHREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSH 525

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  +TVG+ + PI
Sbjct: 526  LRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPI 585

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 607
            +EFLEE+G ++  ++  A   +ATKIFVNG W+G H DP  LV TLR LRR+ D++ EV 
Sbjct: 586  VEFLEEFGLDSLVDMQLAH-AKATKIFVNGVWMGTHDDPGQLVDTLRDLRRKDDISHEVS 644

Query: 608  VVRDIRLKELRIYTDYGRCSRPLFIVEKQ--RLLIKKRDIIALQQR--ESPEDGGWHDLV 663
            VVRDIR +ELRIYTD  R  RP+FIV      LLIKKR +  + Q   ++ E+ GW  LV
Sbjct: 645  VVRDIRERELRIYTDASRVLRPVFIVNPNDMSLLIKKRHVNMIGQPVPQTGEEFGWTHLV 704

Query: 664  AKGFIEYIDTEEEETTMISMTINDLVQARLH--------------------PEEAYADTY 703
             +G IEY+D EEEE+ +I M+  DL Q+R +                    P      T+
Sbjct: 705  QEGVIEYLDAEEEESALICMSPTDLEQSREYQARNGQISLNSADPSARLKSPHYIAPSTW 764

Query: 704  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            THCEIHP+++LG+CASIIPFPDHNQSPRN Y SAMGKQA+ + ++N+  R D++ +VL Y
Sbjct: 765  THCEIHPAMVLGICASIIPFPDHNQSPRNVYFSAMGKQAVSVNISNFLSRADSMNHVLCY 824

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPL TTR+MEHL FR+LPAG N IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++R 
Sbjct: 825  PQKPLGTTRSMEHLKFRELPAGTNCIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSMYYRG 884

Query: 824  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 883
            Y  EEKK+G +  E+F +P+R  T+ M+HG+YDK+D DG   PGTRVSG+DVIIGKT P+
Sbjct: 885  YVAEEKKVGVMQLEEFEKPNRDTTIRMKHGTYDKIDADGFCAPGTRVSGDDVIIGKTAPL 944

Query: 884  SQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 941
              D E  G  S+ +T++D SISL+ +E G++DQVLLTTN+ G +FVKVRVR+ R+PQ GD
Sbjct: 945  PPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSHGNKFVKVRVRNTRVPQTGD 1004

Query: 942  KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1001
            KF+SRHGQKGT+G+TY QEDMP++ EG+TPDII+NPHAIPSRMTIG L+EC++ KVAA  
Sbjct: 1005 KFASRHGQKGTIGITYRQEDMPFSAEGVTPDIIINPHAIPSRMTIGHLVECLLSKVAALS 1064

Query: 1002 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 1061
            G+EGDATPFT++TV+ +S  L   GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHM
Sbjct: 1065 GQEGDATPFTELTVEAVSSILRGLGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHM 1124

Query: 1062 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 1121
            VDDKIHSR RGPVQILTRQP EGRSR GGLRFGEMERDCMIAHG + FLKER+FD SD Y
Sbjct: 1125 VDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERDCMIAHGIAGFLKERMFDVSDPY 1184

Query: 1122 RVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
            R+HVC+ CGL A+ANLKK ++ECR C+N+T I Q+HIPYA KLL QELM++ +A R+
Sbjct: 1185 RIHVCDLCGLTALANLKKGTYECRSCRNRTAISQIHIPYAAKLLMQELMSVNVALRL 1241


>gi|440639504|gb|ELR09423.1| DNA-directed RNA polymerase II subunit B [Geomyces destructans
            20631-21]
          Length = 1272

 Score = 1507 bits (3901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 735/1267 (58%), Positives = 934/1267 (73%), Gaps = 94/1267 (7%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            MED YD E+ ++ E E EE  IT E  W VIS++FE KGLV QQLDSFDEF+  +MQ+++
Sbjct: 4    MEDQYD-EDAYEFEGEAEEPTITAEACWTVISSFFESKGLVSQQLDSFDEFVSTSMQDLI 62

Query: 62   DESADIEIRPESQHNPGQQSDFAETI----YKISFGQIYLSKPMMTESDGETATLFPKAA 117
            +E++ + +    Q+NP   +   E I    Y+I F  +++++PMMTE DG TA LFP+ A
Sbjct: 63   NENSQLTL---DQNNPPPVN--GEPIQLRRYEIKFRTVFIAEPMMTEGDGTTARLFPQEA 117

Query: 118  RLRNLTYSAPLYVDVTKRV--------------------IKKG--HDGEEVTETQDFT-- 153
            RLRNLTYS+ LY+ + K+V                    +  G  H  + V E +D +  
Sbjct: 118  RLRNLTYSSALYIHLDKKVSIAVERPTPLNELDDDEQAELAAGGDHPTKVVWEIEDQSMS 177

Query: 154  -----------------KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 196
                               FIGK+PIML+S YC L    + +L    ECPYDQGGYF+IN
Sbjct: 178  QEEAAKLPANERPVTAEPFFIGKLPIMLKSKYCNLKDMDDDELYGWNECPYDQGGYFVIN 237

Query: 197  GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKG 256
            GSEKVLIAQE+ + N V VFKK  P+   ++AE+RS  E  +R  S++ +++ S+   + 
Sbjct: 238  GSEKVLIAQERSAANIVQVFKKPPPSPTPFIAEIRSALEKGSRLISSLTIKLHSKGDTQR 297

Query: 257  GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
            GS GQ I++TLPYI+++IPI +VFRALG V+D+DIL H+CYD +DTQM+E+++P +EEAF
Sbjct: 298  GSFGQTIKSTLPYIKSDIPIAVVFRALGVVSDEDILNHVCYDRKDTQMLEMMKPCIEEAF 357

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            VIQ+++VALD+IGKRG ++GV RDKRIK+A++I+QKE+LPH+   +  ET+KA++ GY++
Sbjct: 358  VIQDREVALDFIGKRGQSLGVPRDKRIKHARDIMQKELLPHISQKEGSETRKAFFLGYMV 417

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR LFRKLT D+  Y+Q+CV+N K+ 
Sbjct: 418  HKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFRKLTGDLYKYIQRCVENKKEF 477

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            N    IKA T+T+GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PI
Sbjct: 478  NPALGIKATTLTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPI 537

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y+TVG+ + PI+EF+ +  
Sbjct: 538  GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSEPIIEFMIQRS 597

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             E  EE  P   P ATK+FVNG WVG+HRDP  LV+T++ LRR   ++ EV ++RDIR +
Sbjct: 598  MEVLEEYEPLRSPNATKVFVNGVWVGVHRDPSHLVETVQDLRRSSLISHEVSLIRDIRDR 657

Query: 616  ELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI------------IALQQRESPED 656
            E +I+TD GR  RPLF+V+ +       +L+     I            + L+++E    
Sbjct: 658  EFKIFTDAGRVCRPLFVVDNKTDSENNGKLVFNAEHIRRLEDDLALPNNMDLEEKEERGY 717

Query: 657  GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-------------------VQARLHPE- 696
             G+  L+  G +EY+D EEEET MI MT  DL                   + AR+  + 
Sbjct: 718  YGFQGLINDGVVEYLDAEEEETVMIVMTPQDLEDGRKARQGYTVATGAEDSINARVQTKP 777

Query: 697  EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 756
            +A +  YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT
Sbjct: 778  KATSMVYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDT 837

Query: 757  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 816
            +A +LYYPQKPL  TR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG F
Sbjct: 838  MANILYYPQKPLAITRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLF 897

Query: 817  RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 876
            RSLF+R+Y D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG R+SGED+I
Sbjct: 898  RSLFYRAYHDQEKRIGMNVVEQFEKPFRSDTLKLKHGTYDKLDDDGIVAPGVRISGEDII 957

Query: 877  IGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 934
            IGKT P+  D E  GQ ++ +T+RD S  LR +E G+VDQVL+TTNA+GLRFVKVR+R+ 
Sbjct: 958  IGKTAPLPPDAEELGQRTKSHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT 1017

Query: 935  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 994
            +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC +
Sbjct: 1018 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQL 1077

Query: 995  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1054
             KVA+ +GKEGDATPFTDVTVD++S  L   GYQ RGFE MY+GHTGR+L A +FLGPTY
Sbjct: 1078 SKVASLIGKEGDATPFTDVTVDSVSSRLRDMGYQSRGFEVMYHGHTGRKLVAQVFLGPTY 1137

Query: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERL 1114
            YQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRFGEMERDCMI+HGAS FLKERL
Sbjct: 1138 YQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERL 1197

Query: 1115 FDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 1173
            F+ SDA+RVHVC+ CGL+  IA L   SFECR C+NKT I QVHIPYA KLLFQEL +M 
Sbjct: 1198 FEVSDAFRVHVCDICGLMTPIAKLNTQSFECRPCRNKTKISQVHIPYATKLLFQELASMN 1257

Query: 1174 IAPRMLT 1180
            IA RM T
Sbjct: 1258 IAARMFT 1264


>gi|443898353|dbj|GAC75688.1| RNA polymerase II, second largest subunit [Pseudozyma antarctica
            T-34]
          Length = 1240

 Score = 1506 bits (3900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 733/1212 (60%), Positives = 912/1212 (75%), Gaps = 50/1212 (4%)

Query: 5    DYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
            DYD ++ +        EEITQED W VI A+FEEKGLVR QLDSF+EF+ NT+QE+V+E 
Sbjct: 40   DYDNDDGYS-------EEITQEDCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEV 92

Query: 65   ADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 124
              + +    QH+ G   D     Y+I FGQIYL+KP MTESDG +A LFP+ AR RNLTY
Sbjct: 93   RSLTLEQSDQHS-GHAEDKTRR-YEIEFGQIYLNKPTMTESDGSSAQLFPQEARYRNLTY 150

Query: 125  SAPLYVDVTKRVIKKGHD-----------GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQ 173
            SA L+VDVT++V+ +  D            E      D  ++FIGKVPIML+S +C L  
Sbjct: 151  SASLFVDVTQKVLVQSEDELDLNGDAAWVPEHGKTDVDEQQIFIGKVPIMLKSDFCWLKG 210

Query: 174  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233
              ++    L ECPYD GGYF+INGSEKVLIAQE+M+ NHVYVF K  P    ++AE+RS 
Sbjct: 211  LDDEMSYSLNECPYDAGGYFVINGSEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSA 270

Query: 234  AESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293
             E   +  STM V++ SR   K  ++   IRATLPYIR +IPI+IVFRALG V D+++L+
Sbjct: 271  VEKGGKTISTMQVKLFSRNKEK--TANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQ 328

Query: 294  HICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKE 353
            HICYDF DT M+E+L+P +EEAFVIQ++ VALD+IG+RG T G++R KR  YA+EILQKE
Sbjct: 329  HICYDFNDTPMLEMLKPCIEEAFVIQDRDVALDFIGRRGTTTGLSRAKRTVYAQEILQKE 388

Query: 354  MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413
            MLPHV T +   TKKAY+FGY+IHRLLL AL RR  DDRDH+G KR+DL GPL+  LFRM
Sbjct: 389  MLPHVSTSEGSNTKKAYFFGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRM 448

Query: 414  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 472
            LFRK+TRDV  ++QKCV+  ++ ++Q A+K+ TIT+GL+YSLATGNWG Q  A   +AGV
Sbjct: 449  LFRKVTRDVYRHLQKCVEEHREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGV 508

Query: 473  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 532
            SQVLNR  +ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL
Sbjct: 509  SQVLNRFAFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL 568

Query: 533  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 592
            +LM  +TVG+ + PI+EFLEE+G ++  ++  A   +ATK+FVNG W+G H DP  LV T
Sbjct: 569  SLMATVTVGTPSAPIVEFLEEFGLDSLVDMQVAH-AKATKVFVNGVWMGTHDDPGQLVDT 627

Query: 593  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ--RLLIKKRDIIALQQ 650
            LR LRR+ D++ EV VVRDIR +ELRIYTD  R  RP+FIV      LLIKK  +  + Q
Sbjct: 628  LRDLRRKDDISHEVSVVRDIRERELRIYTDASRVLRPVFIVNPHDMTLLIKKHHVEMIGQ 687

Query: 651  R--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-------------------V 689
                + E+  W  LV +G IEY+D EEEE+ +I MT  DL                    
Sbjct: 688  PVPATGEEFRWTQLVQEGVIEYLDAEEEESVLICMTTTDLELSREYKQRNGNINLTSADP 747

Query: 690  QARLHPEEAYA-DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
             ARL      A DT+THCEIHP++ LG+CASI+PFPDHNQSPRN YQSAMGKQA+G+ ++
Sbjct: 748  TARLKAVHTIAPDTWTHCEIHPAMTLGICASIVPFPDHNQSPRNVYQSAMGKQAIGVPIS 807

Query: 749  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
            N   R D++A+VLYYPQKPL TTR+MEH+ FR+LPAG N+IVAI CYSGYNQEDSVIMNQ
Sbjct: 808  NILSRADSMAHVLYYPQKPLGTTRSMEHIRFRELPAGQNSIVAIMCYSGYNQEDSVIMNQ 867

Query: 809  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
            SSIDRGF RSL++R Y  EEKK+G +  E+F +P R  T+ M+HG+YDK+D DGL  PGT
Sbjct: 868  SSIDRGFMRSLYYRGYMAEEKKVGVMQLEEFEKPHRDTTIRMKHGTYDKIDADGLVAPGT 927

Query: 869  RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
            RVSG+DVIIGKT P+  D E  G  S+ +T++D SISL+ +E G++DQVLLTTN++G +F
Sbjct: 928  RVSGDDVIIGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSNGNKF 987

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
            VKVRVR+ R+PQ GDKF+SRHGQKGTVG+ Y QEDMP++ EGITPDII+NPHAIPSRMTI
Sbjct: 988  VKVRVRNSRVPQTGDKFASRHGQKGTVGIMYRQEDMPFSAEGITPDIIINPHAIPSRMTI 1047

Query: 987  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            G L+EC++ KVAA  G+EGDATPFT++TV+ +S  L   GYQ RG E MY+GHTGR++ A
Sbjct: 1048 GHLVECLLSKVAALSGQEGDATPFTELTVEAVSSILRGLGYQSRGLEVMYHGHTGRKMQA 1107

Query: 1047 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 1106
             ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSR GGLRFGEMERDCMIAHG 
Sbjct: 1108 QVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERDCMIAHGI 1167

Query: 1107 SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 1166
            + FLKER+FD SD YR+HVC+ CGL A+ANLKK ++ECR C+N+T I Q+HIPYA KLL 
Sbjct: 1168 AGFLKERMFDVSDPYRIHVCDLCGLTALANLKKGTYECRSCRNRTAISQIHIPYAAKLLM 1227

Query: 1167 QELMAMAIAPRM 1178
            QEL ++ +A R+
Sbjct: 1228 QELQSVNVALRL 1239


>gi|361128142|gb|EHL00094.1| putative DNA-directed RNA polymerase II subunit RPB2 [Glarea
            lozoyensis 74030]
          Length = 1263

 Score = 1505 bits (3896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 725/1240 (58%), Positives = 925/1240 (74%), Gaps = 84/1240 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            IT ED WAVIS++FE KGLV QQLDSFDEF+  TMQE+V+E++ + +    Q+NP    D
Sbjct: 20   ITAEDCWAVISSFFESKGLVSQQLDSFDEFVSTTMQELVEENSQLTL---DQNNPPSSDD 76

Query: 83   --FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV---- 136
               A   Y+I FG + LS+P MTE DG TA + P+ ARLRNLTYS+PLY+++TK+V    
Sbjct: 77   NPIALRRYEIKFGTVLLSRPAMTEGDGTTAVMLPQEARLRNLTYSSPLYLEMTKKVSVAV 136

Query: 137  -------------IKKGH---------------DGEEVTETQD----FTKVFIGKVPIML 164
                         + + H                G+E+T   D      +V+IGK+PIML
Sbjct: 137  ERPVSLNEMDEEQLAEHHRTGEFPTRLLWEDEDSGQEITAAGDKQDKIDRVYIGKLPIML 196

Query: 165  RSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKY 224
            +S YC L    E +L    ECPYDQGGYF+INGSEKVLIAQE+ + N V VFKK  P+  
Sbjct: 197  KSKYCILKDLDEDELYGWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKPLPSPT 256

Query: 225  AYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
             Y+AE+RS  E  +R  S+M +++ ++   + G  GQ I++TLPY++++IPI +VFRALG
Sbjct: 257  PYIAEIRSALEKGSRLISSMTIKLFAKGDGQRGGFGQTIKSTLPYVKSDIPIAVVFRALG 316

Query: 285  FVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIK 344
             V+D+DIL HICYD  DTQM+E+L+P +EEAFVIQ+++VALD+IGKRG +  +TRDKR++
Sbjct: 317  VVSDEDILNHICYDRSDTQMLEMLKPCIEEAFVIQDREVALDFIGKRGNSNTLTRDKRVR 376

Query: 345  YAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 404
            +A++I+QKE+LPH+   +  ET+KA++ GY++H++L CALGRR  DDRDH+G KRLDLAG
Sbjct: 377  HARDIMQKELLPHISQKEGSETRKAFFLGYMVHKMLQCALGRRECDDRDHFGKKRLDLAG 436

Query: 405  PLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QA 463
            PLL  LFR LF++LT DV  Y+Q+CV+N ++ NL   +K+ T+T+GLKYSLATGNWG Q 
Sbjct: 437  PLLAKLFRNLFKRLTGDVYKYLQRCVENNREFNLTLGVKSTTLTNGLKYSLATGNWGDQK 496

Query: 464  NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 523
             AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEG
Sbjct: 497  KAAQSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 556

Query: 524  QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 583
            QACGLVKNLALM Y+TVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+H
Sbjct: 557  QACGLVKNLALMCYVTVGTPSDPIIEFMIQRNMEVLEEYEPLRSPNATKVFVNGVWVGVH 616

Query: 584  RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQ 636
            RDP  LV+T++ LRR   ++ EV ++RDIR +E +I+TD GR  RPLF+++       K 
Sbjct: 617  RDPAHLVRTVQHLRRSHLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVIDNDVDSQNKG 676

Query: 637  RLLIKKRDI------------IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 684
             L++ K  +            + L+Q+      G+  L+  G +EY+D EEEET MI MT
Sbjct: 677  NLVLNKDHVRRLEEDQLMPANMDLEQKAEAGYFGFQGLINAGVVEYLDAEEEETVMIVMT 736

Query: 685  INDLVQAR-------LHPEEA-------------YADTYTHCEIHPSLILGVCASIIPFP 724
              DL  +R       L P+E+              A  +THCEIHPS+ILG+CASIIPFP
Sbjct: 737  PEDLDISRQLQAGYALRPDESGDLNKRVKAPMKPTAHIWTHCEIHPSMILGICASIIPFP 796

Query: 725  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
            DHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 797  DHNQSPRNTYQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSMEFLKFRELPA 856

Query: 785  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 844
            G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P R
Sbjct: 857  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPFR 916

Query: 845  SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 902
            S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+RD S 
Sbjct: 917  SDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPMAPDAEELGQRTKAHTKRDAST 976

Query: 903  SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
             LR +E G+VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDM
Sbjct: 977  PLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRMEDM 1036

Query: 963  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1022
            P+T +GI PD+I+NPHAIPSRMTI  LIEC + KV+   G EGDATPFT+VTVD++SK L
Sbjct: 1037 PFTSQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDATPFTEVTVDSVSKLL 1096

Query: 1023 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1082
               GYQ RGFE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP 
Sbjct: 1097 RDHGYQSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPV 1156

Query: 1083 EGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNS 1141
            EGR+RDGGLRFGEMERDCMI+HGA+ FLKERLF+ SDA+RVH+C+ CGL+  IA L+  +
Sbjct: 1157 EGRARDGGLRFGEMERDCMISHGAAAFLKERLFEVSDAFRVHLCDICGLMTPIAKLQSQN 1216

Query: 1142 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            FECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T+
Sbjct: 1217 FECRSCKNKTRISQIHIPYAAKLLFQELASMNIAARMFTE 1256


>gi|6606093|gb|AAF19059.1|AF107787_1 DNA-dependent RNA polymerase II RPB140 [Candida albicans]
          Length = 1210

 Score = 1504 bits (3893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 733/1217 (60%), Positives = 917/1217 (75%), Gaps = 66/1217 (5%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            M D Y Y+          +E ITQED W VI+++F+EKGLV QQLDSFDEF++ ++QE+V
Sbjct: 7    MADPYQYDSI--------DEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELV 58

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
             E + + +   +QH    + D     Y+I+FG+IY+SKP  TE DG T  +FP+ ARLRN
Sbjct: 59   WEDSHLILDQPAQHT--SEKDHENKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRN 116

Query: 122  LTYSAPLYVDVTKRVIK------KGHDGEEVTETQDF---TKVFIGKVPIMLRSSYCTLY 172
            LTYS+PLYVD+T +V K      K ++ E + E  D    TKVF+GKVPIMLRS +C L 
Sbjct: 117  LTYSSPLYVDMTSKVFKSDDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLR 176

Query: 173  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 232
              +E +  EL ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+  ++VAE+RS
Sbjct: 177  DLAEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRS 236

Query: 233  MAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 292
              E  +R  S+M +++  R   + G SG+ I+ATLPYI+ +IPI+IVFRALG V D DIL
Sbjct: 237  AIEKGSRLISSMQIKLYGRD--EKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDIL 294

Query: 293  EHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQK 352
            EHICYD  D QM+E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQK
Sbjct: 295  EHICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQK 353

Query: 353  EMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 412
            E+LP++   +  ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR
Sbjct: 354  ELLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFR 413

Query: 413  MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAG 471
            +LF+KLT+D+  Y+Q+CV+NG D N+  A+K++TIT GL+YSLATGNWG Q  A  +RAG
Sbjct: 414  ILFKKLTKDIYNYMQRCVENGGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAG 473

Query: 472  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 531
            VSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKN
Sbjct: 474  VSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKN 533

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 591
            L+LM  I+VG+ + PIL FL ++G E  E+  P+  P +T++FVNG WVG+HRDP  LV 
Sbjct: 534  LSLMTCISVGTPSEPILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVD 593

Query: 592  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRD 644
             +R LRR  D++ EV ++RDIR KE +I+TD GR  RPLFIV+       K  L I K  
Sbjct: 594  FMRELRRSGDLSPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNPDSETKGELKITKEH 653

Query: 645  IIALQQRESPEDGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDLV------ 689
            +  L + +  ++           W  LVA G +EY+D EEEET MI+MT +D+       
Sbjct: 654  VKQLLRSDELDEDDEDYENSRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKNSV 713

Query: 690  ----QARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
                Q ++  EE   D              TYTHCEIHPS+ILGV ASIIPFPDHNQSPR
Sbjct: 714  SESEQQKIQLEEQELDPGKRIKPTTSGNTHTYTHCEIHPSMILGVAASIIPFPDHNQSPR 773

Query: 732  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
            NTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVA
Sbjct: 774  NTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVA 833

Query: 792  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 851
            IACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++
Sbjct: 834  IACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLK 893

Query: 852  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSET 909
            HG+Y+KLD+DGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+
Sbjct: 894  HGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLRSTES 953

Query: 910  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
            G+VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI
Sbjct: 954  GIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGI 1013

Query: 970  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1029
             PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + IS  L   GYQ 
Sbjct: 1014 VPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDVTTEQISTLLRDHGYQS 1073

Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1089
            RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDG
Sbjct: 1074 RGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDG 1133

Query: 1090 GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCK 1148
            GLRFGEMERDCMIAHGA+ FLKERL + SDA+RVHVC  CGL++ IANLKKN FECR CK
Sbjct: 1134 GLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCK 1193

Query: 1149 NKTDIVQVHIPYACKLL 1165
            NKT+I Q+HIPYA KLL
Sbjct: 1194 NKTNIYQIHIPYAAKLL 1210


>gi|345561256|gb|EGX44352.1| hypothetical protein AOL_s00193g80 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1258

 Score = 1502 bits (3889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 725/1244 (58%), Positives = 918/1244 (73%), Gaps = 93/1244 (7%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN-PGQQS 81
            IT ED W VIS++F+ KGLV QQ+DSFDEF+  TMQE++DE   + +     HN P    
Sbjct: 16   ITAEDCWTVISSFFDAKGLVSQQIDSFDEFVSTTMQELIDEDNQLVL----DHNTPSNDE 71

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI---- 137
              A   ++I FG + LS+P  TE DG T  + P+ ARLRNLTY++PLY+ ++++V+    
Sbjct: 72   GIALRRFEIKFGNVLLSRPTFTEGDGSTQVMQPQEARLRNLTYASPLYLQMSQKVMVARE 131

Query: 138  ---------------------KK----------GHDGEEV------TETQDFTKVFIGKV 160
                                 KK          G   EEV       +T + T+VFIGK+
Sbjct: 132  KSMAEKEEDEDEDMDDAEEGEKKEKQDFHWQVIGDTTEEVGDDDDDIDTSNHTRVFIGKI 191

Query: 161  PIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 220
            PIML+S YC L + +E  L  L ECPYDQGGYF+INGSEKVLIAQE+ + N V  FKK  
Sbjct: 192  PIMLKSQYCVLKEFNEDGLYGLNECPYDQGGYFVINGSEKVLIAQERSAANIVQCFKKAA 251

Query: 221  PNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 280
            P+  +Y+AE+RS  E  +R  S++ ++++++   + G  G+ IR+TLPYI+T++PI +VF
Sbjct: 252  PSPISYIAEIRSALEKGSRLISSLTIKLMAKGEGRTGF-GRTIRSTLPYIKTDVPIAVVF 310

Query: 281  RALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRD 340
            RALG V+D+DIL  +CYD  DT M+E+L+P +EEAFVIQ+++VALD+IGKRG+  G+ RD
Sbjct: 311  RALGVVSDEDILNRVCYDRNDTAMLEMLKPCIEEAFVIQDREVALDFIGKRGSAQGINRD 370

Query: 341  KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRL 400
            KRIKYAKEI+QKE+LPH+   +  ET+KA++ GY++H++L CAL RR  DDRDH+G KRL
Sbjct: 371  KRIKYAKEIMQKELLPHISQAEGHETRKAFFLGYMVHKMLQCALERRETDDRDHFGRKRL 430

Query: 401  DLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNW 460
            DLAGPLL  LFRMLF+KL +DV  Y+QKCV++G+D N+  AIK+ TIT+GLKYSLATGNW
Sbjct: 431  DLAGPLLANLFRMLFKKLVKDVFKYLQKCVESGRDFNVTLAIKSNTITNGLKYSLATGNW 490

Query: 461  G-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAE 519
            G Q   A  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAE
Sbjct: 491  GDQKKPASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAE 550

Query: 520  TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 579
            TPEGQACGLVKNL+LM YITVGS   PI  F+E+   E  E   P   P  TK+F+NG W
Sbjct: 551  TPEGQACGLVKNLSLMSYITVGSPTEPIQAFMEQRNLEPLETFEPGRSPNVTKVFINGSW 610

Query: 580  VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE----- 634
            VG+HRD   L +T+  LRR   ++ EV V+RDIR +E +I++D GR +RPL++++     
Sbjct: 611  VGVHRDAASLYRTVLSLRRTNVISHEVSVIRDIRDREFKIFSDAGRVTRPLYVIDNDPGS 670

Query: 635  --KQRLLIKKRDIIALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISM 683
              K  L+++K  I  L+  +           E  GW+ L+  G +EY+D EEEET MISM
Sbjct: 671  LRKGELVLQKYHIEKLENAKFQTAEDLAPGEEKYGWNGLLNDGCVEYVDAEEEETIMISM 730

Query: 684  TINDL-----------------------VQARLHPEEAYADTYTHCEIHPSLILGVCASI 720
            +  DL                       V+A+++P   YA T+THCEIHPS+ILG+CASI
Sbjct: 731  SPEDLEISRQVQAGYEIPVDDSGDMAKRVKAKVNP---YAHTWTHCEIHPSMILGICASI 787

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME L FR
Sbjct: 788  IPFPDHNQSPRNTYQSAMGKQAMGIFLTNFNERMDTMANILYYPQKPLATTRSMEFLKFR 847

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
            +LPAG NAIV I CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK++G    E+F 
Sbjct: 848  ELPAGQNAIVGIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDSEKRIGMTTIEEFE 907

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRR 898
            +P R+NT+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI  D E  GQ ++ +T+R
Sbjct: 908  KPMRNNTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIPADTEELGQRTKNHTKR 967

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  LR +E G+VDQV+LTTNA+G+RFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY 
Sbjct: 968  DVSTPLRSTENGIVDQVMLTTNAEGMRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYR 1027

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
             EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV+N+
Sbjct: 1028 HEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVENV 1087

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
            S+ L + GYQ RGFE MYNGHTG++L   +FLGPTYYQRL+HMVDDKIH+R RGPVQILT
Sbjct: 1088 SRLLREHGYQSRGFEVMYNGHTGKKLVCQVFLGPTYYQRLRHMVDDKIHARARGPVQILT 1147

Query: 1079 RQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANL 1137
            RQP EGR+RDGGLRFGEMERDCMI+HGAS FLKERLF+ SDA+RVHVC+ CGL+  IANL
Sbjct: 1148 RQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAFRVHVCDICGLMTPIANL 1207

Query: 1138 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            KKN FECR C+NKT I Q+H+PYA KLLFQEL AM IA RM +K
Sbjct: 1208 KKNLFECRPCRNKTKISQIHLPYAAKLLFQELTAMNIAARMYSK 1251


>gi|225680527|gb|EEH18811.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
            brasiliensis Pb03]
 gi|226292836|gb|EEH48256.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1258

 Score = 1498 bits (3877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 733/1241 (59%), Positives = 909/1241 (73%), Gaps = 81/1241 (6%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            ++EE IT ED W VIS++FE KGLV QQLDSFDEFI  TMQE+V+E   + +      + 
Sbjct: 15   EQEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSE 74

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
             +        Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY++PLY+ +TKRV 
Sbjct: 75   DEVDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 134

Query: 138  KKGHDGEE--VTETQDFT--------------------------------KVFIGKVPIM 163
                +G E  ++E  D                                   VFIG++PIM
Sbjct: 135  ----EGRERLISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIM 190

Query: 164  LRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 223
            L+S YC L   +E+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK  P+ 
Sbjct: 191  LKSKYCILKDLNEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSP 250

Query: 224  YAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRAL 283
              YVAE+RS  E  +R  S + +++ ++     G  G  IR+TLPYI+T+IPI++VFRAL
Sbjct: 251  TPYVAEIRSAVEKGSRILSQLSIKLFAKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRAL 310

Query: 284  GFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDKR 342
            G V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++   +  +KR
Sbjct: 311  GVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKR 370

Query: 343  IKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDL 402
            ++YA++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDL
Sbjct: 371  VRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDL 430

Query: 403  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 461
            AGPLL  LFR+LF ++T+D+  YVQ+CV+  + + L   +KA T++ GLKY+LATGNWG 
Sbjct: 431  AGPLLANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGE 490

Query: 462  QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
            Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 491  QKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 550

Query: 522  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
            EGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG
Sbjct: 551  EGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVG 610

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----- 636
            +HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE       
Sbjct: 611  VHRDPSHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSEN 670

Query: 637  --RLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISM 683
               L++ K  I  L+  +E P D           GW  LV  G +EY+D EEEET MI M
Sbjct: 671  CGSLVLSKEHIHKLEADKEIPADLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 730

Query: 684  TINDL-----VQARLH-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPF 723
            T  DL     VQA  + PEE + D              T+THCEIHPS+ILG+CASIIPF
Sbjct: 731  TPEDLEMSKQVQAGYNLPEEDHTDRNRRVRSNLSQKAHTWTHCEIHPSMILGICASIIPF 790

Query: 724  PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 783
            PDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LP
Sbjct: 791  PDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELP 850

Query: 784  AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 843
            AG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P 
Sbjct: 851  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPM 910

Query: 844  RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHS 901
            RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+ D S
Sbjct: 911  RSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPDAEELGQRTKQHTKVDVS 970

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
              LR +E+G+VDQVL++T+ D L+FVKVR R+ +IPQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 971  TPLRSTESGIVDQVLISTSNDDLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITYRQED 1030

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MP+T EGITPDII+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS  
Sbjct: 1031 MPFTREGITPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISGL 1090

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
            L + GYQ RGFE MYNGHTGR+L A IFLGPTYYQRL+HMVDDKIH+R RGP QILTRQP
Sbjct: 1091 LREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQP 1150

Query: 1082 AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKN 1140
             EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK 
Sbjct: 1151 VEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKG 1210

Query: 1141 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
             FECR CKNK  I QVHIPYA KLLFQELM+M IA RM TK
Sbjct: 1211 DFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARMFTK 1251


>gi|295661506|ref|XP_002791308.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226280870|gb|EEH36436.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1258

 Score = 1498 bits (3877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 733/1241 (59%), Positives = 909/1241 (73%), Gaps = 81/1241 (6%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            ++EE IT ED W VIS++FE KGLV QQLDSFDEFI  TMQE+V+E   + +      + 
Sbjct: 15   EQEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSE 74

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
             +        Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY++PLY+ +TKRV 
Sbjct: 75   DEVDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 134

Query: 138  KKGHDGEE--VTETQDFT--------------------------------KVFIGKVPIM 163
                +G E  ++E  D                                   VFIG++PIM
Sbjct: 135  ----EGRERLISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIM 190

Query: 164  LRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 223
            L+S YC L   +E+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK  P+ 
Sbjct: 191  LKSKYCILKDLNEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSP 250

Query: 224  YAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRAL 283
              YVAE+RS  E  +R  S + +++ ++     G  G  IR+TLPYI+T+IPI++VFRAL
Sbjct: 251  TPYVAEIRSAVEKGSRILSQLSIKLFAKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRAL 310

Query: 284  GFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDKR 342
            G V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++   +  +KR
Sbjct: 311  GVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKR 370

Query: 343  IKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDL 402
            ++YA++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDL
Sbjct: 371  VRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDL 430

Query: 403  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 461
            AGPLL  LFR+LF ++T+D+  YVQ+CV+  + + L   +KA T++ GLKY+LATGNWG 
Sbjct: 431  AGPLLANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGE 490

Query: 462  QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
            Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 491  QKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 550

Query: 522  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
            EGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG
Sbjct: 551  EGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVG 610

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----- 636
            +HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE       
Sbjct: 611  VHRDPSHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSEN 670

Query: 637  --RLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISM 683
               L++ K  I  L+  +E P D           GW  LV  G +EY+D EEEET MI M
Sbjct: 671  CGSLVLSKEHIHKLEADKEIPADLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 730

Query: 684  TINDL-----VQARLH-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPF 723
            T  DL     VQA  + PEE + D              T+THCEIHPS+ILG+CASIIPF
Sbjct: 731  TPEDLEMSKQVQAGYNLPEEDHTDRNRRVRSNLSQKTHTWTHCEIHPSMILGICASIIPF 790

Query: 724  PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 783
            PDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LP
Sbjct: 791  PDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELP 850

Query: 784  AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 843
            AG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P 
Sbjct: 851  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPM 910

Query: 844  RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHS 901
            RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+ D S
Sbjct: 911  RSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPDAEELGQRTKQHTKVDVS 970

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
              LR +E+G+VDQVL++T+ D L+FVKVR R+ +IPQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 971  TPLRSTESGIVDQVLISTSNDDLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITYRQED 1030

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MP+T EGITPDII+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS  
Sbjct: 1031 MPFTREGITPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISGL 1090

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
            L + GYQ RGFE MYNGHTGR+L A IFLGPTYYQRL+HMVDDKIH+R RGP QILTRQP
Sbjct: 1091 LREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGPTQILTRQP 1150

Query: 1082 AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKN 1140
             EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK 
Sbjct: 1151 VEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKG 1210

Query: 1141 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
             FECR CKNK  I QVHIPYA KLLFQELM+M IA RM TK
Sbjct: 1211 DFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARMFTK 1251


>gi|317033268|ref|XP_001395161.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus niger CBS
            513.88]
          Length = 1231

 Score = 1497 bits (3876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 729/1224 (59%), Positives = 914/1224 (74%), Gaps = 53/1224 (4%)

Query: 7    DYEEQHQQEE-EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            DYE+ ++ E  +D +E IT ED W VIS++F+ KGLV QQLDSFDEFI +TMQE+V+E  
Sbjct: 3    DYEDAYEDEYYDDMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETI---YKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
             + +    Q  P  + +    +   Y++ FG + LS+P +TE DG T  + P+ ARLRNL
Sbjct: 63   QVTL---DQTLPPSEDEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNL 119

Query: 123  TYSAPLYVDVTKRVIKKGHDGEEVTETQDFTK---VFIGKVPIMLRSSYCTLYQNSEKDL 179
            TY++PLY+ VTK++++         +  D  K   VFIGK+PIML+S YC L   SE+ L
Sbjct: 120  TYASPLYLGVTKKIMEGRERLVADRDDDDMAKEETVFIGKMPIMLKSKYCILKDLSEQAL 179

Query: 180  TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNR 239
                ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK  P+   YVAE+RS  E  +R
Sbjct: 180  YNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSR 239

Query: 240  PPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 299
              S + +++ ++  +  G  G  IR+TLPY++T+IPI++VFRALG V+D+DIL HICYD 
Sbjct: 240  LLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDR 299

Query: 300  QDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDKRIKYAKEILQKEMLPHV 358
             DT M+E+L+P +EE FVIQ+++VALD+I KRG++   +  ++R++YA+EI+QKE LPH+
Sbjct: 300  NDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKEFLPHI 359

Query: 359  GTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 418
               +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+LF ++
Sbjct: 360  SQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRV 419

Query: 419  TRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLN 477
            TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA  +AGVSQVL+
Sbjct: 420  TRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLS 479

Query: 478  RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 537
            R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y
Sbjct: 480  RYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCY 539

Query: 538  ITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLR 597
            ITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVGIHRDP  LV T+  LR
Sbjct: 540  ITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLVNTMLSLR 599

Query: 598  RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQ 650
            RR  ++ EV ++RDIR +E +I+TD GR  RPLF+V+          L++ K  I  L+Q
Sbjct: 600  RRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKEHIRKLEQ 659

Query: 651  RES------PEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARLH---- 694
             +       PED      GW  LV  G +EY+D EEEET MI MT  DL +  +L     
Sbjct: 660  DKDLPPDLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYA 719

Query: 695  -PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
             PEE   D              T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 720  LPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMG 779

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYN
Sbjct: 780  KQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYN 839

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+GMR G+YDKLD
Sbjct: 840  QEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLD 899

Query: 860  DDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLL 917
            +DG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E G+VDQVL+
Sbjct: 900  EDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLV 959

Query: 918  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
            +T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD+I+NP
Sbjct: 960  STSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCPDLIINP 1019

Query: 978  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1037
            HAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS+ L + GYQ RGFE MYN
Sbjct: 1020 HAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISRLLREHGYQSRGFEVMYN 1079

Query: 1038 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1097
            GHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRFGEME
Sbjct: 1080 GHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEME 1139

Query: 1098 RDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQV 1156
            RDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  +A LKK  FECR C NK  I QV
Sbjct: 1140 RDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQV 1199

Query: 1157 HIPYACKLLFQELMAMAIAPRMLT 1180
            HIPYA KLLFQEL +M IA RM T
Sbjct: 1200 HIPYAAKLLFQELASMNIAARMFT 1223


>gi|115385276|ref|XP_001209185.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            terreus NIH2624]
 gi|114196877|gb|EAU38577.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            terreus NIH2624]
          Length = 1256

 Score = 1496 bits (3873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 733/1246 (58%), Positives = 917/1246 (73%), Gaps = 72/1246 (5%)

Query: 7    DYEEQHQQEEEDEEEE-ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            DYE+ ++ E  DE +E IT ED W VIS++F+ KGLV QQLDSFDEFI +TMQE+V+E  
Sbjct: 3    DYEDAYEDEFYDEMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
             + +      N  +        Y++ FG + LS+P +TE DG T  + P+ ARLRNLTY+
Sbjct: 63   QVTLDQTLPPNEDEVDPIVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYA 122

Query: 126  APLYVDVTKRVIK------KGHDGEEVTETQDFTK----------------------VFI 157
            +PLY+ +TKR+++         + EE+ E  +  K                      VFI
Sbjct: 123  SPLYLGITKRIMEGRERLVADRNEEEMGEPVEDRKSQGTYLQWEQKELPPDQAKEETVFI 182

Query: 158  GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 217
            GK+PIML+S YC L   SE+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V VFK
Sbjct: 183  GKMPIMLKSKYCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFK 242

Query: 218  KRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 277
            K  P+   YVAE+RS  E  +R  S + +++ ++  +  G  G  IR+TLPY++T+IPI+
Sbjct: 243  KAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIV 302

Query: 278  IVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VG 336
            +VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++   
Sbjct: 303  VVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSS 362

Query: 337  VTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYG 396
            +  ++R++YA+EI+QKE+LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G
Sbjct: 363  MNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFG 422

Query: 397  NKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLA 456
             KRLDLAGPLL  LFR+LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+LA
Sbjct: 423  KKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALA 482

Query: 457  TGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMM 515
            TGNWG Q  AA  +AGVSQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++
Sbjct: 483  TGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLV 542

Query: 516  CPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFV 575
            CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FV
Sbjct: 543  CPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFV 602

Query: 576  NGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK 635
            NG WVGIHRDP  LV T+  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+V+ 
Sbjct: 603  NGVWVGIHRDPAHLVNTMSSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDN 662

Query: 636  Q-------RLLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEYIDTEEEE 677
                     L++ K  I  L+Q +E P D           GW  LV  G +EY+D EEEE
Sbjct: 663  DPKSENCGSLVLNKEHIRKLEQDKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEE 722

Query: 678  TTMISMTINDL-VQARLH-----PEEAYAD--------------TYTHCEIHPSLILGVC 717
            T MI MT  DL +  +L      PEE   D              T+THCEIHPS+ILGVC
Sbjct: 723  TIMIVMTPEDLEISKQLQAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMILGVC 782

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L
Sbjct: 783  ASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANLLYYPQKPLATTRSMEFL 842

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
             FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E
Sbjct: 843  RFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVE 902

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 895
             F +P RS+T+GMR G+YDKLD+DG+  PG RVSGED+IIGKT P++ + E  GQ ++ +
Sbjct: 903  RFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAH 962

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
            T+ D S  LR +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 963  TKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 1022

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1015
            TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTV
Sbjct: 1023 TYRQEDMPFTREGVAPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTV 1082

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1075
            D+IS+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP Q
Sbjct: 1083 DSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQ 1142

Query: 1076 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-I 1134
            ILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  I
Sbjct: 1143 ILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPI 1202

Query: 1135 ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            A LKK  FECR C NK  I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1203 AKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARMFT 1248


>gi|239609658|gb|EEQ86645.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            ER-3]
 gi|327357696|gb|EGE86553.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1258

 Score = 1496 bits (3872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 731/1249 (58%), Positives = 917/1249 (73%), Gaps = 74/1249 (5%)

Query: 7    DYEEQHQQEEE-DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            DYEE++ Q+   D++E IT ED W VIS++FE KGLV QQLDSFDEFI  TMQE+V+E  
Sbjct: 3    DYEEEYGQDAYYDQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
             + +      +  +        Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY+
Sbjct: 63   QVTLDQTLAPSEDEIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYA 122

Query: 126  APLYVDVTKRV-------IKKGHDGEEVTETQDFTK-----------------------V 155
            +PLY+ +TKRV       I +  D E+  E  D  +                       V
Sbjct: 123  SPLYLGITKRVTEGRERLIAERDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENV 182

Query: 156  FIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYV 215
            FIG++PIML+S YC L   +E+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V V
Sbjct: 183  FIGRMPIMLKSKYCILKDLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQV 242

Query: 216  FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIP 275
            FKK  P+   YVAE+RS  E  +R  S + +++  +  A  G  G  IR+TLPYI+T+IP
Sbjct: 243  FKKAPPSPTPYVAEIRSAIEKGSRILSQLSIKLFGKGDASKGGFGPTIRSTLPYIKTDIP 302

Query: 276  IIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT- 334
            I++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++ 
Sbjct: 303  IVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSP 362

Query: 335  VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 394
              +  +KR++YA++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH
Sbjct: 363  TSMNHEKRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDH 422

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFR+LF ++T+D+  YVQ+CV+  + + L   +KA T++ GLKY+
Sbjct: 423  FGKKRLDLAGPLLANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYA 482

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 483  LATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 542

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P ATK+
Sbjct: 543  LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKV 602

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+V
Sbjct: 603  FVNGVWVGVHRDPSHLVNTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVV 662

Query: 634  EKQ-------RLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEE 675
            E          L++ K  I  L+  +E P D           GW  LV  G +EY+D EE
Sbjct: 663  ENDPKSENCGSLVLSKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEE 722

Query: 676  EETTMISMTINDL-----VQARLH-PEEAYAD--------------TYTHCEIHPSLILG 715
            EET MI MT  DL     +QA    PEE   D              T+THCEIHPS+ILG
Sbjct: 723  EETIMIVMTPEDLETSKQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILG 782

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            +CASIIPFPDHNQSPRNTYQ+AMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME
Sbjct: 783  ICASIIPFPDHNQSPRNTYQAAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME 842

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
             L FR+LPAG N+IVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V
Sbjct: 843  FLKFRELPAGQNSIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTV 902

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR 894
             E F +P RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++
Sbjct: 903  VERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTK 962

Query: 895  -YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
             +T+ D S  LR +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+
Sbjct: 963  QHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTI 1022

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDV
Sbjct: 1023 GITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDV 1082

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TVD+IS  L + GYQ RGFE MYNG+TGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP
Sbjct: 1083 TVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGP 1142

Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
             QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+ 
Sbjct: 1143 TQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMT 1202

Query: 1134 -IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
             IA LKK+ FECR CKNK  I QVHIPYA KLLFQELM+M IA R+ TK
Sbjct: 1203 PIAKLKKSDFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARLFTK 1251


>gi|310792957|gb|EFQ28418.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
          Length = 1259

 Score = 1495 bits (3871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 728/1253 (58%), Positives = 918/1253 (73%), Gaps = 83/1253 (6%)

Query: 4    DDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            D+YDY+       ++++  IT ED W VIS++FE KGLV QQ+DSFDEF  +T+QE++DE
Sbjct: 6    DEYDYDGY----VDEDDTSITPEDCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDE 61

Query: 64   SADIEIRPESQHNPGQQSD--FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
             + I +    Q NP   SD   A   Y++ FG + +S+P +TE+DG+  TL P   R RN
Sbjct: 62   YSQITL---DQPNPMSDSDKVIALRRYEVKFGTVMVSRPSITEADGKVTTLLPYECRDRN 118

Query: 122  LTYSAPLYVDVTKRV---IKKGHDGEEVTETQ---------------------------D 151
            LTY++PLYV +TK+V   ++K     E+ E Q                           D
Sbjct: 119  LTYASPLYVKITKKVSIAVEKPIPLNELDEEQQDELANTGEHPTKLEWEEEESGEDYGAD 178

Query: 152  FTK-------VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 204
              K       +FIG++PIM++S  C L    E DL  L ECPYDQGGYFIINGSEKVLIA
Sbjct: 179  KNKSDDMKDMIFIGRMPIMVKSKICHLSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIA 238

Query: 205  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 264
            QE+ + N V VFKK QP+ Y+Y AE+RS  E  +R  S+M +++ S+  A  G  GQ I 
Sbjct: 239  QERSAANIVQVFKKAQPSPYSYTAEIRSALEKGSRLISSMMLKLYSKGDAAKGGYGQTIH 298

Query: 265  ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVA 324
             +LPY++ ++PI IVFRALG V+D+DIL HICYD  D+QM+E+LRP +EEAF IQ+++VA
Sbjct: 299  CSLPYVKADLPIAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVA 358

Query: 325  LDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCAL 384
            LD+IGKRG+   + R+KR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL CAL
Sbjct: 359  LDFIGKRGSNHNIPREKRVRTAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCAL 418

Query: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
            GRR  DDRDH+G KRLDLAGPLL  LFR + R++ +++  ++++CV++ +  +L   +K 
Sbjct: 419  GRRDTDDRDHFGKKRLDLAGPLLAKLFRNIVRRMNQELSGHLKRCVESNRQFSLTLGVKP 478

Query: 445  KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
            +T+++GLKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAK
Sbjct: 479  QTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAK 538

Query: 504  PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
            PRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VG+ A PI++++ + G E  EE  
Sbjct: 539  PRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYE 598

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
            P   P ATK+F+NG WVG+H+DP +LV  ++  RRR  ++ EV +VRDIR +E +I++D 
Sbjct: 599  PLRYPNATKVFLNGVWVGVHQDPRILVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDA 658

Query: 624  GRCSRPLFIVEKQRLLIKKRDIIALQ---------QRESPEDG-----GWHDLVAKGFIE 669
            GR  RP+F+VE+    I  +  + LQ         Q+E+P D       W  L   G IE
Sbjct: 659  GRVMRPVFVVEQSANGIVPQGSLVLQKATVNEMREQQENPPDNPADKITWESLAHSGVIE 718

Query: 670  YIDTEEEETTMISMTINDLVQARLHPE----EAYAD---------------TYTHCEIHP 710
            Y+D EEEET MI MT  DL   RL  +    E  AD                YTHCEIHP
Sbjct: 719  YLDAEEEETAMICMTPEDLEIYRLQKQGQVVEDNADGPNSRLKTKINPTTHMYTHCEIHP 778

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S++LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKPL T
Sbjct: 779  SMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLAT 838

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D EK+
Sbjct: 839  TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKR 898

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ- 889
            +G  + E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT+PIS D A+ 
Sbjct: 899  VGINLVEQFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPISPDNAEL 958

Query: 890  GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ  +++ +RD S  LR +E G+VDQV++TTN DGLR+VKVRVR+ +IPQIGDKF+SRHG
Sbjct: 959  GQRTTQHVKRDASTPLRSTENGIVDQVIVTTNQDGLRYVKVRVRTTKIPQIGDKFASRHG 1018

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV+   G EGDAT
Sbjct: 1019 QKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDAT 1078

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            PFTDVTVD++S+ L   GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVDDKIH+
Sbjct: 1079 PFTDVTVDSVSQLLRDQGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHA 1138

Query: 1069 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 1128
            R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVHVCE 
Sbjct: 1139 RARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHVCEI 1198

Query: 1129 CGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1199 CGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1251


>gi|429863599|gb|ELA38032.1| DNA-directed RNA polymerase ii subunit rpb2 [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1259

 Score = 1493 bits (3864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 726/1256 (57%), Positives = 917/1256 (73%), Gaps = 89/1256 (7%)

Query: 4    DDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            D+YDY+        +E+E IT ED W VIS++FE KGLV QQ+DSFDEF  +T+QE++DE
Sbjct: 6    DEYDYDGY-----VEEDESITPEDCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDE 60

Query: 64   SADIEIRPESQHNPGQQSD--FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
             + I +    Q NP   SD   A   Y++ FG + +S+P +TE+DG+  TL P   R RN
Sbjct: 61   YSQITL---DQPNPMSDSDKVIALRRYEVKFGTVMVSRPSITEADGKVTTLLPYECRDRN 117

Query: 122  LTYSAPLYVDVTKRV---IKK------------------------------------GHD 142
            LTY++PLYV +TK+V   ++K                                    G D
Sbjct: 118  LTYASPLYVKITKKVSIAVEKPIPLNELDEEQQEELANTGEHPTKLEWEEEESGEDYGAD 177

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
              +  + +D   +FIG++PIM++S  C L    E DL  L ECPYDQGGYFIINGSEKVL
Sbjct: 178  KNKSDDMKDM--IFIGRMPIMVKSKICHLSSEQEDDLFMLNECPYDQGGYFIINGSEKVL 235

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            IAQE+ + N V VFKK QP+ Y+Y AE+RS  E  +R  S+M +++ S+  A  G  GQ 
Sbjct: 236  IAQERSAANIVQVFKKAQPSPYSYTAEIRSALEKGSRLISSMMLKLYSKGDAAKGGYGQT 295

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
            I  +LPY+++++PI IVFRALG V+D+DIL HICYD  D+QM+E+LRP +EEAF IQ+++
Sbjct: 296  IHCSLPYVKSDLPIAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDRE 355

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
            VALD+IGKRG+   + R+KR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL C
Sbjct: 356  VALDFIGKRGSNHNIPREKRVRTAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQC 415

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
            ALGRR  DDRDH+G KRLDLAGPLL  LFR + R++ +++  ++++CV++ +  +L   +
Sbjct: 416  ALGRRDTDDRDHFGKKRLDLAGPLLAKLFRNIVRRMNQELSGHLKRCVESNRQFSLTLGV 475

Query: 443  KAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501
            K +T+++GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKL
Sbjct: 476  KPQTLSNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKL 535

Query: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561
            AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VG+ A PI++++ + G E  EE
Sbjct: 536  AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEE 595

Query: 562  ISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 621
              P   P ATK+F+NG WVG+H+DP +LV  ++  RRR  ++ EV +VRDIR +E +I++
Sbjct: 596  YEPLRYPNATKVFLNGVWVGVHQDPRILVPDVQGTRRRNVISHEVSLVRDIRDREFKIFS 655

Query: 622  DYGRCSRPLFIVEKQRLLIKKRDIIALQ---------QRESPEDG-----GWHDLVAKGF 667
            D GR  RP+F+VE+    I  +  + LQ         Q+E+P D       W  L   G 
Sbjct: 656  DAGRVMRPVFVVEQSPTGIVPQGSLVLQKGTVNEMRDQQENPPDNPNDKITWETLAHSGV 715

Query: 668  IEYIDTEEEETTMISMTINDLVQARLHP-----EEAYAD---------------TYTHCE 707
            IEY+D EEEET MI MT  DL   RL       EE  AD                YTHCE
Sbjct: 716  IEYLDAEEEETAMICMTPEDLEIYRLQKQGQVIEEDNADDRNRRLKTKINPTTHMYTHCE 775

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS++LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKP
Sbjct: 776  IHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKP 835

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D 
Sbjct: 836  LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDC 895

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EK++G  + E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT+PI+ D 
Sbjct: 896  EKRVGINLVEQFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDN 955

Query: 888  AQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
             + GQ  +++ +RD S  LR +E G+VD V++TTN DGLR+VKVRVR+ +IPQIGDKF+S
Sbjct: 956  QELGQKTTQHVKRDASTPLRSTENGIVDSVIITTNQDGLRYVKVRVRTTKIPQIGDKFAS 1015

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV+   G EG
Sbjct: 1016 RHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEG 1075

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFTDVTVD++S+ L   GYQ RGFE MY GHTGR+L A +F GPTYYQRL+HMVDDK
Sbjct: 1076 DATPFTDVTVDSVSQLLRDQGYQSRGFEIMYQGHTGRKLRAQVFFGPTYYQRLRHMVDDK 1135

Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHV 1125
            IH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVHV
Sbjct: 1136 IHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHV 1195

Query: 1126 CEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CE CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1196 CEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1251


>gi|134079870|emb|CAK41002.1| unnamed protein product [Aspergillus niger]
 gi|350637591|gb|EHA25948.1| hypothetical protein ASPNIDRAFT_54460 [Aspergillus niger ATCC 1015]
          Length = 1256

 Score = 1492 bits (3863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 730/1249 (58%), Positives = 919/1249 (73%), Gaps = 78/1249 (6%)

Query: 7    DYEEQHQQEE-EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            DYE+ ++ E  +D +E IT ED W VIS++F+ KGLV QQLDSFDEFI +TMQE+V+E  
Sbjct: 3    DYEDAYEDEYYDDMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETI---YKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
             + +    Q  P  + +    +   Y++ FG + LS+P +TE DG T  + P+ ARLRNL
Sbjct: 63   QVTL---DQTLPPSEDEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNL 119

Query: 123  TYSAPLYVDVTKRVIK------KGHDGEEVTETQDFTK---------------------- 154
            TY++PLY+ VTK++++         D +++ E+ +  K                      
Sbjct: 120  TYASPLYLGVTKKIMEGRERLVADRDDDDMAESTEDKKAHGTYLQWEQKELPADQAKEET 179

Query: 155  VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVY 214
            VFIGK+PIML+S YC L   SE+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V 
Sbjct: 180  VFIGKMPIMLKSKYCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQ 239

Query: 215  VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 274
            VFKK  P+   YVAE+RS  E  +R  S + +++ ++  +  G  G  IR+TLPY++T+I
Sbjct: 240  VFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDI 299

Query: 275  PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT 334
            PI++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++
Sbjct: 300  PIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSS 359

Query: 335  -VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 393
               +  ++R++YA+EI+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRD
Sbjct: 360  QSSMNHERRVRYAREIMQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRD 419

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G KRLDLAGPLL  LFR+LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY
Sbjct: 420  HFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKY 479

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            +LATGNWG Q  AA  +AGVSQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 480  ALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 539

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            G++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P ATK
Sbjct: 540  GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATK 599

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            +FVNG WVGIHRDP  LV T+  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+
Sbjct: 600  VFVNGVWVGIHRDPAHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFV 659

Query: 633  VEKQ-------RLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDTE 674
            V+          L++ K  I  L+Q +       PED      GW  LV  G +EY+D E
Sbjct: 660  VDNDPKSENCGSLVLNKEHIRKLEQDKDLPPDLDPEDRRERYFGWDGLVKSGVVEYVDAE 719

Query: 675  EEETTMISMTINDL-VQARLH-----PEEAYAD--------------TYTHCEIHPSLIL 714
            EEET MI MT  DL +  +L      PEE   D              T+THCEIHPS+IL
Sbjct: 720  EEETIMIVMTPEDLEISKQLQAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMIL 779

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            GVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+M
Sbjct: 780  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSM 839

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  
Sbjct: 840  EFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLT 899

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 893
            V E F +P RS+T+GMR G+YDKLD+DG+  PG RVSGED+IIGKT P++ + E  GQ +
Sbjct: 900  VVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRT 959

Query: 894  R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
            + +T+ D S  LR +E G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT
Sbjct: 960  KAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGT 1019

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            +G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTD
Sbjct: 1020 IGITYRQEDMPFTREGVCPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTD 1079

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 1072
            VTVD+IS+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RG
Sbjct: 1080 VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARG 1139

Query: 1073 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 1132
            P QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+
Sbjct: 1140 PTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLM 1199

Query: 1133 A-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
              +A LKK  FECR C NK  I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1200 TPVAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARMFT 1248


>gi|317155939|ref|XP_001825469.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus oryzae
            RIB40]
          Length = 1221

 Score = 1492 bits (3862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 722/1219 (59%), Positives = 909/1219 (74%), Gaps = 65/1219 (5%)

Query: 20   EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
            EE IT ED W VIS++F+ KGLV QQLDSFDEFI +TMQE+V+E   + +    Q  P  
Sbjct: 2    EEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL---DQTLPPD 58

Query: 80   QSDFAETI---YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
            + +    +   Y++ FG + LS+P +TE DG T  + P+ ARLRNLTY++PLY+ +TKR+
Sbjct: 59   EDEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRI 118

Query: 137  IKKGHDGEEVTETQDFTK-------------VFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
            +    +G E +      +             VFIGKVPIML+S YC L   SE+ L    
Sbjct: 119  M----EGRERSVADRDDEEIEEDEDRKAQETVFIGKVPIMLKSKYCILKDLSEQALYNWN 174

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK  P+   YVAE+RS  E  +R  S 
Sbjct: 175  ECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQ 234

Query: 244  MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQ 303
            + +++ ++  +  G  G  IR+TLPY++T+IPI++VFRALG V+D+DIL HICYD  DT 
Sbjct: 235  LSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRNDTP 294

Query: 304  MMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDKRIKYAKEILQKEMLPHVGTGD 362
            M+E+L+P +EE FVIQ+++VALD+I KRG++   +  ++R++YA+EI+QKE+LPH+   +
Sbjct: 295  MLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSE 354

Query: 363  FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
              ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+LF ++TRD+
Sbjct: 355  GSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDL 414

Query: 423  RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTY 481
            + YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA  +AGVSQVL+R TY
Sbjct: 415  QRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTY 474

Query: 482  ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
            ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y+TVG
Sbjct: 475  ASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVG 534

Query: 542  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
            + + PI++F+ +   E  EE  P V P ATK+FVNG WVGIHRDP  LV T++ LRRR  
Sbjct: 535  TPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLVNTMQSLRRRNM 594

Query: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDIIALQQRE-- 652
            ++ EV ++RDIR +E +I+TD GR  RPLF+++          L++ K  I  L+Q +  
Sbjct: 595  ISHEVSLIRDIREREFKIFTDAGRVCRPLFVIDNDPKSENCGGLVLNKEHIRKLEQDKEL 654

Query: 653  ----SPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARLH-----PEE 697
                 PED      GW  LV  G +EY+D EEEET MISMT  DL +  +L      PEE
Sbjct: 655  PPDLDPEDRRERYFGWDGLVRSGVVEYVDAEEEETIMISMTPEDLEISKQLQAGYALPEE 714

Query: 698  AY-------------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
                           A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 715  ELDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 774

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            +++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSV
Sbjct: 775  VFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSV 834

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            +MNQSSIDRG FRSLF+R+Y D EK +G  V E F +P R +T+GMR G+YDKLD+DG+ 
Sbjct: 835  VMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRQDTIGMRKGTYDKLDEDGII 894

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNAD 922
             PG RVSGED+IIGKT P++ D E  GQ ++ +T+ D S  LR +E+G+VDQVL++T+ D
Sbjct: 895  APGVRVSGEDIIIGKTAPLAPDAEELGQRTKAHTKLDVSTPLRSTESGIVDQVLVSTSND 954

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
             L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP++ EG+ PD+++NPHAIPS
Sbjct: 955  DLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFSREGVAPDLVINPHAIPS 1014

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMTI  LIEC + KV+A  G EGDATPFTDVTVD++S+ L + GYQ RGFE MYNGHTGR
Sbjct: 1015 RMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGR 1074

Query: 1043 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI 1102
            +L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRFGEMERDCMI
Sbjct: 1075 KLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMI 1134

Query: 1103 AHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYA 1161
            AHGAS FLKERLFD SD +RVH+C+ CGL+  +A LKK  FECR C NK  I QVHIPYA
Sbjct: 1135 AHGASAFLKERLFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHIPYA 1194

Query: 1162 CKLLFQELMAMAIAPRMLT 1180
             KLLFQEL +M IA RM T
Sbjct: 1195 AKLLFQELASMNIAARMFT 1213


>gi|70982424|ref|XP_746740.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
 gi|66844364|gb|EAL84702.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
 gi|159123019|gb|EDP48139.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus A1163]
          Length = 1255

 Score = 1492 bits (3862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 730/1247 (58%), Positives = 917/1247 (73%), Gaps = 75/1247 (6%)

Query: 7    DYEEQHQQEEEDEEEE-ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            +Y++ ++ E  DE EE IT ED W VIS++F+ KGLV QQLDSFDEFI +TMQE+V+E  
Sbjct: 3    EYDDAYEDEFYDEMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
             + +  +    P +  D    +  Y++ FG + LS+P +TE DG T  + P+ ARLRNLT
Sbjct: 63   QVTL--DQTLPPSEDEDDPVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLT 120

Query: 124  YSAPLYVDVTKRVIK-----------------------------KGHDGEEVTETQDFTK 154
            Y++PLY+ +TKR+++                             +    E   +      
Sbjct: 121  YASPLYLGITKRIMEGRERLIADRDEDDAAPDADEDRKARGTYLQWEQKELPPDQAKEET 180

Query: 155  VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVY 214
            VFIGK+PIML+S YC L   SE+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V 
Sbjct: 181  VFIGKMPIMLKSKYCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQ 240

Query: 215  VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 274
            VFKK  P+   YVAE+RS  E  +R  S + +++ ++  +  G  G  IR+TLPY++T+I
Sbjct: 241  VFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDI 300

Query: 275  PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT 334
            PI++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++
Sbjct: 301  PIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSS 360

Query: 335  -VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 393
               +  ++R++YA+EI+QKE+LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRD
Sbjct: 361  QSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRD 420

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G KRLDLAGPLL  LFR+LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY
Sbjct: 421  HFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKY 480

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            +LATGNWG Q  AA ++AGVSQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 481  ALATGNWGEQKKAASSKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 540

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            G++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P ATK
Sbjct: 541  GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATK 600

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            +FVNG WVG+HRDP  LV T+  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+
Sbjct: 601  VFVNGVWVGVHRDPAHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFV 660

Query: 633  VEKQ-------RLLIKKRDIIALQQRE------SPEDG-----GWHDLVAKGFIEYIDTE 674
            V+          L++ K  I  L+Q +       PED      GW  LV  G +EY+D E
Sbjct: 661  VDNDPKSENCGSLVLNKDHIRKLEQDKELPADLDPEDRRERYFGWDGLVKSGVVEYVDAE 720

Query: 675  EEETTMISMTINDL-VQARLH-----PEE------------AYADTYTHCEIHPSLILGV 716
            EEET MI MT  DL +  +L      PEE              A T+THCEIHPS+ILGV
Sbjct: 721  EEETIMIVMTPEDLEISKQLQAGYALPEEDDPNKRVRSVLSQKAHTWTHCEIHPSMILGV 780

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME 
Sbjct: 781  CASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEF 840

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V 
Sbjct: 841  LRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVV 900

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 894
            E F +P RS+T+GMR G+YDKLD+DG+  PG RVSGED+IIGKT P++ + E  GQ ++ 
Sbjct: 901  ERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKA 960

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            +T+ D S  LR +E G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 961  HTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1020

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP+T EG++PD+I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVT
Sbjct: 1021 ITYRQEDMPFTREGVSPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVT 1080

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1074
            VD+IS+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP 
Sbjct: 1081 VDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPT 1140

Query: 1075 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA- 1133
            QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  
Sbjct: 1141 QILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTP 1200

Query: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            IA LKK  FECR C NK  I QVHIPYA KLLFQEL AM IA RM T
Sbjct: 1201 IAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNIAARMFT 1247


>gi|380478926|emb|CCF43324.1| DNA-directed RNA polymerase II subunit RPB2 [Colletotrichum
            higginsianum]
          Length = 1258

 Score = 1491 bits (3860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 722/1240 (58%), Positives = 910/1240 (73%), Gaps = 79/1240 (6%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            E+++  IT ED W VIS++FE KGLV QQ+DSFDEF  +T+QE++DE + I +    Q N
Sbjct: 14   EEDDTSITPEDCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDEYSQITL---DQPN 70

Query: 77   PGQQSD--FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 134
            P   SD   A   Y++ FG + +S+P +TE+DG+  TL P   R RNLTY++PLYV +TK
Sbjct: 71   PMSDSDKVIALRRYEVKFGTVMVSRPSITEADGKVTTLLPYECRDRNLTYASPLYVKITK 130

Query: 135  RV---IKKGHDGEEVTETQ---------------------------DFTK-------VFI 157
            +V   ++K     E+ E Q                           D  K       +FI
Sbjct: 131  KVSIAVEKPIPLNELDEEQQDELANTGEHPTKLEWEEEESGEDYGADKNKSDDMKDMIFI 190

Query: 158  GKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFK 217
            G++PIM++S  C L    E DL  L ECPYDQGGYFIINGSEKVLIAQE+ + N V VFK
Sbjct: 191  GRMPIMVKSKICHLSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFK 250

Query: 218  KRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 277
            K QP+ Y+Y AE+RS  E  +R  S+M +++ S+  A  G  GQ I  +LPY++ ++PI 
Sbjct: 251  KAQPSPYSYTAEIRSALEKGSRLISSMMLKLYSKGDAAKGGYGQTIHCSLPYVKADLPIA 310

Query: 278  IVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGV 337
            IVFRALG V+D+DIL HICYD  D+QM+E+LRP +EEAF IQ+++VALD+IGKRG+   +
Sbjct: 311  IVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVALDFIGKRGSNHNI 370

Query: 338  TRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGN 397
             R+KR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G 
Sbjct: 371  PREKRVRTAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGK 430

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFR + R++ +++  ++++CV++ +  +L   +K +T+++GLKYSLAT
Sbjct: 431  KRLDLAGPLLAKLFRNIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLAT 490

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++C
Sbjct: 491  GNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVC 550

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNL+LM Y++VG+ A PI++++ + G E  EE  P   P ATK+F+N
Sbjct: 551  PAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLN 610

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVG+H+DP +LV  ++  RRR  ++ EV +VRDIR +E +I++D GR  RP+F+VE+ 
Sbjct: 611  GVWVGVHQDPRILVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQG 670

Query: 637  RLLIKKRDIIALQ---------QRESPEDG-----GWHDLVAKGFIEYIDTEEEETTMIS 682
               I  +  + LQ         Q+E+P D       W  L   G IEY+D EEEET MI 
Sbjct: 671  ANGIVPQGSLVLQKATVNEMRDQQENPPDNPADKITWESLAHSGVIEYLDAEEEETAMIC 730

Query: 683  MTINDLVQARLHPEEAYAD-------------------TYTHCEIHPSLILGVCASIIPF 723
            MT  DL   RL  +    +                    YTHCEIHPS++LG+CASIIPF
Sbjct: 731  MTPEDLEIYRLQKQGQVVEDNTDGPNSRLKTKINPTTHMYTHCEIHPSMLLGICASIIPF 790

Query: 724  PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 783
            PDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LP
Sbjct: 791  PDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELP 850

Query: 784  AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 843
            AG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P 
Sbjct: 851  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEKPF 910

Query: 844  RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHS 901
            RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT+PIS D A+ GQ  +++ +RD S
Sbjct: 911  RSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPISPDNAELGQRTTQHVKRDAS 970

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
              LR +E G+VDQV++TTN DGLR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 971  TPLRSTENGIVDQVIVTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQED 1030

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S+ 
Sbjct: 1031 MPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDVTVDSVSQL 1090

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
            L   GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP
Sbjct: 1091 LRDQGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQP 1150

Query: 1082 AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKN 1140
             EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVHVCE CGL+  IANL K 
Sbjct: 1151 VEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQ 1210

Query: 1141 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1211 SFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1250


>gi|154279576|ref|XP_001540601.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
 gi|150412544|gb|EDN07931.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
          Length = 1743

 Score = 1491 bits (3860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 726/1237 (58%), Positives = 904/1237 (73%), Gaps = 73/1237 (5%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            D++E IT ED W VIS++FE KGLV QQLDSFDEFI  TMQE+V+E   + +        
Sbjct: 500  DQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAE 559

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV- 136
             +        Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY++PLY+ +TKRV 
Sbjct: 560  DKIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 619

Query: 137  ------IKKGHDGEEVTETQDFTK-----------------------VFIGKVPIMLRSS 167
                  I +  D E+  E  D  +                       VFIG++PIML+S 
Sbjct: 620  EGRERLIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 679

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
            YC L   +E+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK  P+   YV
Sbjct: 680  YCILKDLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYV 739

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AE+RS  E  +R  S + +++  +        G  IR+TLPYI+T+IPI++VFRALG V+
Sbjct: 740  AEIRSAVEKGSRILSQLSIKLFGKGDTSKSGFGPTIRSTLPYIKTDIPIVVVFRALGVVS 799

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDKRIKYA 346
            D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++   +  +KR++YA
Sbjct: 800  DEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYA 859

Query: 347  KEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 406
            ++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPL
Sbjct: 860  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 919

Query: 407  LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANA 465
            L  LFR+LF ++T+D+  YVQ+CV+  + + L   +KA T++ GLKY+LATGNWG Q  A
Sbjct: 920  LANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKA 979

Query: 466  AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQA 525
            A ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQA
Sbjct: 980  ASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 1039

Query: 526  CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRD 585
            CGLVKNLALM  ITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRD
Sbjct: 1040 CGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRD 1099

Query: 586  PEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RL 638
            P  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE          L
Sbjct: 1100 PSHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSL 1159

Query: 639  LIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTIND 687
            ++ K  I  L+  +E P D           GW  LV  G +EY+D EEEET MI MT  D
Sbjct: 1160 VLSKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPED 1219

Query: 688  L-----VQARLH-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHN 727
            L     +QA    PEE   D              T+THCEIHPS+ILG+CASIIPFPDHN
Sbjct: 1220 LETSKQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHN 1279

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG N
Sbjct: 1280 QSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQN 1339

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T
Sbjct: 1340 AIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDT 1399

Query: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLR 905
            + M+HG+YDK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR
Sbjct: 1400 LRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKLDVSTPLR 1459

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
             +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 1460 STESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFT 1519

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
             EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS  L + 
Sbjct: 1520 REGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISSLLREH 1579

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GYQ RGFE MYNG+TGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR
Sbjct: 1580 GYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGR 1639

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFEC 1144
            +RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FEC
Sbjct: 1640 ARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKGDFEC 1699

Query: 1145 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            R CKNK  I QVHIPYA KLLFQELM+M IA RM TK
Sbjct: 1700 RACKNKNKISQVHIPYAAKLLFQELMSMNIAARMFTK 1736


>gi|238498864|ref|XP_002380667.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
 gi|83774211|dbj|BAE64336.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|220693941|gb|EED50286.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
 gi|391868073|gb|EIT77296.1| RNA polymerase II, second largest subunit [Aspergillus oryzae 3.042]
          Length = 1254

 Score = 1491 bits (3859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 725/1247 (58%), Positives = 917/1247 (73%), Gaps = 76/1247 (6%)

Query: 7    DYEEQHQQE-EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            DY++ ++ E  +D EE IT ED W VIS++F+ KGLV QQLDSFDEFI +TMQE+V+E  
Sbjct: 3    DYDDAYEDEFYDDMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETI---YKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
             + +    Q  P  + +    +   Y++ FG + LS+P +TE DG T  + P+ ARLRNL
Sbjct: 63   QVTL---DQTLPPDEDEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNL 119

Query: 123  TYSAPLYVDVTKRVIK---------------------------KGHDGEEVTETQDFTKV 155
            TY++PLY+ +TKR+++                           +    E   +      V
Sbjct: 120  TYASPLYLGITKRIMEGRERSVADRDDEEIEEDEDRKARGTYLQWEQKELPADQAKEETV 179

Query: 156  FIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYV 215
            FIGKVPIML+S YC L   SE+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V V
Sbjct: 180  FIGKVPIMLKSKYCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQV 239

Query: 216  FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIP 275
            FKK  P+   YVAE+RS  E  +R  S + +++ ++  +  G  G  IR+TLPY++T+IP
Sbjct: 240  FKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIP 299

Query: 276  IIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT- 334
            I++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++ 
Sbjct: 300  IVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQ 359

Query: 335  VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 394
              +  ++R++YA+EI+QKE+LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH
Sbjct: 360  SSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDH 419

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFR+LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+
Sbjct: 420  FGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYA 479

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA  +AGVSQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 480  LATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 539

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNLALM Y+TVG+ + PI++F+ +   E  EE  P V P ATK+
Sbjct: 540  LVCPAETPEGQACGLVKNLALMCYVTVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKV 599

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVGIHRDP  LV T++ LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF++
Sbjct: 600  FVNGVWVGIHRDPAHLVNTMQSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVI 659

Query: 634  EKQR-------LLIKKRDIIALQQRE------SPEDG-----GWHDLVAKGFIEYIDTEE 675
            +          L++ K  I  L+Q +       PED      GW  LV  G +EY+D EE
Sbjct: 660  DNDPKSENCGGLVLNKEHIRKLEQDKELPPDLDPEDRRERYFGWDGLVRSGVVEYVDAEE 719

Query: 676  EETTMISMTINDL-VQARLH-----PEEAY-------------ADTYTHCEIHPSLILGV 716
            EET MISMT  DL +  +L      PEE               A T+THCEIHPS+ILGV
Sbjct: 720  EETIMISMTPEDLEISKQLQAGYALPEEELDPNKRVRSILSQKAHTWTHCEIHPSMILGV 779

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME 
Sbjct: 780  CASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEF 839

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAIACYSGYNQEDSV+MNQSSIDRG FRSLF+R+Y D EK +G  V 
Sbjct: 840  LRFRELPAGQNAIVAIACYSGYNQEDSVVMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVV 899

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 894
            E F +P R +T+GMR G+YDKLD+DG+  PG RVSGED+IIGKT P++ D E  GQ ++ 
Sbjct: 900  ERFEKPMRQDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPDAEELGQRTKA 959

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            +T+ D S  LR +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 960  HTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1019

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP++ EG+ PD+++NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVT
Sbjct: 1020 ITYRQEDMPFSREGVAPDLVINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVT 1079

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1074
            VD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP 
Sbjct: 1080 VDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPT 1139

Query: 1075 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA- 1133
            QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  
Sbjct: 1140 QILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTP 1199

Query: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            +A LKK  FECR C NK  I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1200 VAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARMFT 1246


>gi|261196850|ref|XP_002624828.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            SLH14081]
 gi|239596073|gb|EEQ78654.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            SLH14081]
          Length = 1258

 Score = 1490 bits (3858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 726/1237 (58%), Positives = 909/1237 (73%), Gaps = 73/1237 (5%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            D++E IT ED W VIS++FE KGLV QQLDSFDEFI  TMQE+V+E   + +      + 
Sbjct: 15   DQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSE 74

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV- 136
             +        Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY++PLY+ +TKRV 
Sbjct: 75   DEIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 134

Query: 137  ------IKKGHDGEEVTETQDFTK-----------------------VFIGKVPIMLRSS 167
                  I +  D E+  E  D  +                       VFIG++PIML+S 
Sbjct: 135  EGRERLIAERDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSK 194

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
            YC L   +E+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK  P+   YV
Sbjct: 195  YCILKDLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYV 254

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AE+RS  E  +R  S + +++  +  A  G  G  IR+TLPYI+T+IPI++VFRALG V+
Sbjct: 255  AEIRSAIEKGSRILSQLSIKLFGKGDASKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVS 314

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDKRIKYA 346
            D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++   +  +KR++YA
Sbjct: 315  DEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYA 374

Query: 347  KEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 406
            ++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPL
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 407  LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANA 465
            L  LFR+LF ++T+D+  YVQ+CV+  + + L   +KA T++ GLKY+LATGNWG Q  A
Sbjct: 435  LANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKA 494

Query: 466  AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQA 525
            A ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQA
Sbjct: 495  ASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 554

Query: 526  CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRD 585
            CGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRD
Sbjct: 555  CGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRD 614

Query: 586  PEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RL 638
            P  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE          L
Sbjct: 615  PSHLVNTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSL 674

Query: 639  LIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTIND 687
            ++ K  I  L+  +E P D           GW  LV  G +EY+D EEEET MI MT  D
Sbjct: 675  VLSKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPED 734

Query: 688  L-----VQARLH-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHN 727
            L     +QA    PEE   D              T+THCEIHPS+ILG+CASIIPFPDHN
Sbjct: 735  LETSKQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHN 794

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQ+AMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG N
Sbjct: 795  QSPRNTYQAAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQN 854

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            +IVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T
Sbjct: 855  SIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDT 914

Query: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLR 905
            + M+HG+YDK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR
Sbjct: 915  LRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKLDVSTPLR 974

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
             +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 975  STESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFT 1034

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
             EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS  L + 
Sbjct: 1035 REGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISSLLREH 1094

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GYQ RGFE MYNG+TGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR
Sbjct: 1095 GYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGR 1154

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFEC 1144
            +RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK+ FEC
Sbjct: 1155 ARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMTPIAKLKKSDFEC 1214

Query: 1145 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            R CKNK  I QVHIPYA KLLFQELM+M IA R+ TK
Sbjct: 1215 RACKNKNKISQVHIPYAAKLLFQELMSMNIAARLFTK 1251


>gi|358374560|dbj|GAA91151.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            kawachii IFO 4308]
          Length = 1256

 Score = 1490 bits (3857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 729/1249 (58%), Positives = 919/1249 (73%), Gaps = 78/1249 (6%)

Query: 7    DYEEQHQQEE-EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            DYE+ ++ E  +D +E IT ED W VIS++F+ KGLV QQLDSFDEFI +TMQE+V+E  
Sbjct: 3    DYEDAYEDEYYDDMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETI---YKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
             + +    Q  P  + +    +   Y++ FG + LS+P +TE DG T  + P+ ARLRNL
Sbjct: 63   QVTL---DQTLPPSEDEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNL 119

Query: 123  TYSAPLYVDVTKRVIK------KGHDGEEVTETQDFTK---------------------- 154
            TY++PLY+ VTK++++         D +++ E+ +  K                      
Sbjct: 120  TYASPLYLGVTKKIMEGRERLVADRDEDDMGESNEDRKAHGTYLQWEQKELPADQAKEET 179

Query: 155  VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVY 214
            VFIGK+PIML+S YC L   SE+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V 
Sbjct: 180  VFIGKMPIMLKSKYCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQ 239

Query: 215  VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 274
            VFKK  P+   YVAE+RS  E  +R  S + +++ ++  +  G  G  IR+TLPY++T+I
Sbjct: 240  VFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDI 299

Query: 275  PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT 334
            PI++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++
Sbjct: 300  PIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSS 359

Query: 335  -VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 393
               +  ++R++YA+EI+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRD
Sbjct: 360  QSSMNHERRVRYAREIMQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRD 419

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G KRLDLAGPLL  LFR+LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY
Sbjct: 420  HFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKY 479

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            +LATGNWG Q  AA  +AGVSQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 480  ALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 539

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            G++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P ATK
Sbjct: 540  GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATK 599

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            +FVNG WVGIHRDP  LV T+  LRRR  ++ EV ++RDIR +E +I+TD GR  RPL++
Sbjct: 600  VFVNGVWVGIHRDPAHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLYV 659

Query: 633  VEKQ-------RLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDTE 674
            V+          L++ K  I  L+Q +       PED      GW  LV  G +EY+D E
Sbjct: 660  VDNDPKSENCGSLVLNKEHIRKLEQDKDLPPDLDPEDRRERYFGWDGLVKSGVVEYVDAE 719

Query: 675  EEETTMISMTINDL-VQARLH-----PEEAYAD--------------TYTHCEIHPSLIL 714
            EEET MI MT  DL +  +L      PEE   D              T+THCEIHPS+IL
Sbjct: 720  EEETIMIVMTPEDLEISKQLQAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMIL 779

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            GVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+M
Sbjct: 780  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSM 839

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  
Sbjct: 840  EFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLT 899

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 893
            V E F +P RS+T+GMR G+YDKLD+DG+  PG RVSGED+IIGKT P++ + E  GQ +
Sbjct: 900  VVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRT 959

Query: 894  R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
            + +T+ D S  LR +E G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT
Sbjct: 960  KAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGT 1019

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            +G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTD
Sbjct: 1020 IGITYRQEDMPFTREGVCPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTD 1079

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 1072
            VTVD+IS+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RG
Sbjct: 1080 VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARG 1139

Query: 1073 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 1132
            P QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+
Sbjct: 1140 PTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLM 1199

Query: 1133 A-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
              +A LKK  FECR C NK  I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1200 TPVAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARMFT 1248


>gi|347828662|emb|CCD44359.1| RPB2, DNA-dependent RNA polymerase II second largest subunit
            [Botryotinia fuckeliana]
          Length = 1260

 Score = 1490 bits (3857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 730/1254 (58%), Positives = 924/1254 (73%), Gaps = 82/1254 (6%)

Query: 7    DYEEQHQQEEEDEEEE-ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            DYEE ++ ++  EE+  IT ED W VIS++FE KGLV QQLDSFDEF+Q TMQE+V+E++
Sbjct: 3    DYEEGYEYDDYGEEDAGITAEDCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENS 62

Query: 66   DIEIRPESQHNPGQQSD--FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
             + +    Q+NP    D   A   Y+I FG I LS+P MTE DG T  + P+ ARLRNLT
Sbjct: 63   QLTL---DQNNPPSSHDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLT 119

Query: 124  YSAPLYVDVTK---------------------RVIKKG-HDGEEVTETQDFT-------- 153
            YS+PLY+++TK                      ++  G H    V E +D          
Sbjct: 120  YSSPLYIEMTKSTQVAVERPVPLNELDDEQEAEMVNGGEHPTRLVWEYEDGDPEGPKGAP 179

Query: 154  ---KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 210
               +V+IGK+P+ML+S +C L    E +L    ECPYDQGGYFIINGSEKVLIAQE+ + 
Sbjct: 180  LPEQVYIGKLPMMLKSEFCILKGLDEDELYGWNECPYDQGGYFIINGSEKVLIAQERSAA 239

Query: 211  NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYI 270
            N V VFKK   +  +Y+AE+RS  E  +R  S++ +++  +  +  G  G+ +++TLPYI
Sbjct: 240  NIVQVFKKPANSAVSYLAEIRSALEKGSRLISSLQIKLYDKGDSNRGGFGKTVKSTLPYI 299

Query: 271  RTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGK 330
            + +IPI IVFRALG V+D+DIL HICYD  DTQM+E+L+P +EEAFVIQ+++VALD+IGK
Sbjct: 300  KADIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALDFIGK 359

Query: 331  RGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 390
            RG    +TRDKRIKYA++I+QKE+LPH+   +  ET+KA++ GY++H+LL CALGRR  D
Sbjct: 360  RGNGTSLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETD 419

Query: 391  DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSG 450
            DRDH+G KRLDLAGPLL  LFR LFR+LT DV  Y+Q+CV+N ++ NL   +K+ TIT+G
Sbjct: 420  DRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNG 479

Query: 451  LKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 509
            LKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN
Sbjct: 480  LKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHN 539

Query: 510  SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ 569
            + WG++CPAETPEGQACGLVKNLALM Y+TVG+ + PI+EF+ +   E  EE  P   P 
Sbjct: 540  THWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPN 599

Query: 570  ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRP 629
            ATK+FVNG WVGIHRDP  LVK ++ LRR   ++ EV ++R+IR +E +I+TD GR  RP
Sbjct: 600  ATKVFVNGVWVGIHRDPAHLVKCVQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRP 659

Query: 630  LFIVE-------KQRLLIKKRDIIALQ----------QRESPEDG--GWHDLVAKGFIEY 670
            L +++       K  L++ K  I  L+          + E   +G  G+  L+  G +EY
Sbjct: 660  LLVIDNDPDSANKGNLVLNKDHIRRLEDDQLLPANMDKDEKVRNGYYGFQGLINDGVVEY 719

Query: 671  IDTEEEETTMISMTINDLVQAR-------LHPEEA-------------YADTYTHCEIHP 710
            +D EEEET MI+MT  DL  +R       + P+E+              A  +THCEIHP
Sbjct: 720  LDAEEEETVMITMTPEDLDISRQLQAGYQIRPDESGDLNKRVKAPINPTAHVWTHCEIHP 779

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRN YQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL T
Sbjct: 780  SMILGICASIIPFPDHNQSPRNCYQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLAT 839

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK+
Sbjct: 840  TRSMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKR 899

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
            +G  V E F +P RS+T+ ++ G+YDKLDDDG+  PG RV+G D+IIGKT PI+ D E  
Sbjct: 900  IGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVAPGVRVTGADIIIGKTAPIAPDSEEM 959

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ ++ + +RD S  LR +E+G+VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 960  GQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 1019

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY Q+DMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV+   G EGDAT
Sbjct: 1020 QKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDAT 1079

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            PFT+VTVD++SK L   GY  RGFE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKIH+
Sbjct: 1080 PFTEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHA 1139

Query: 1069 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 1128
            R RGPVQILTRQP EGR+RDGGLRFGEMERDCMI+HGAS FLKERLF+ SDA+RVH+C+ 
Sbjct: 1140 RARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAFRVHICDI 1199

Query: 1129 CGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            CGL+  IA +   SFECR CKNKT I Q+HIPYA KLLFQEL AM IA RM TK
Sbjct: 1200 CGLMTPIAKINTGSFECRPCKNKTKISQIHIPYAAKLLFQELAAMNIATRMFTK 1253


>gi|353243888|emb|CCA75371.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2)
            [Piriformospora indica DSM 11827]
          Length = 1223

 Score = 1489 bits (3856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/1198 (59%), Positives = 915/1198 (76%), Gaps = 40/1198 (3%)

Query: 15   EEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 74
            +EE + ++ITQED W VI+A+FE++GLVRQQLDSF+EFI NT+Q+IV++S D+ +    Q
Sbjct: 21   DEEGDPDKITQEDCWTVIAAFFEKRGLVRQQLDSFNEFINNTIQDIVEDSGDLNLEQHEQ 80

Query: 75   HNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 134
            H  G ++D   T +KI FGQ+YL++P +TE DG+ + LFP+ ARLRNLTYSA L V++ +
Sbjct: 81   HT-GAETD-KSTRHKIKFGQVYLTRPSVTEKDGQVSPLFPQEARLRNLTYSATLMVEIVE 138

Query: 135  RVIKK------GHDGEEVTET-QDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY 187
               ++      G D E +  +   F ++ + K+PIMLRS  C LY   + +  +L ECP 
Sbjct: 139  EKQEQVPNDEGGWDWERIPGSIPGFNRLPLAKIPIMLRSDICALYTIPDPEKYDLNECPD 198

Query: 188  DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVR 247
            D GGYFII+G EKVLIAQE+M+ NHVYVF K QP+  +++AE+RS+ E   +  S+  V+
Sbjct: 199  DPGGYFIISGQEKVLIAQERMAGNHVYVFAKGQPSPISFLAEIRSVPERGGKLLSSFQVK 258

Query: 248  MLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMEL 307
            +  +   K   SG  IRA++PYI+T++PI I+FRA+G +AD+DILEHICYD  D QM+E+
Sbjct: 259  LFHKGIEK--QSGGAIRASVPYIKTDVPIWILFRAMGVLADRDILEHICYDGHDDQMLEM 316

Query: 308  LRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETK 367
            L+P ++E FV+Q++++ALD+IG+RG T  ++R++RI+YA+EI+QKE+LPH+   +  E +
Sbjct: 317  LKPCIDEGFVVQHREIALDFIGRRGNTPTISRERRIRYAQEIIQKELLPHISMEEGNEAR 376

Query: 368  KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 427
            KAY+ GY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL  LFRMLFRK+ +DV  Y+Q
Sbjct: 377  KAYFVGYMIHRLLLAALDRREIDDRDHFGKKRLDLAGPLLSTLFRMLFRKVVKDVYRYLQ 436

Query: 428  KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLS 486
            KCV++GK  ++  AIK  TI++GLKYSLATGNWG Q NA  ++AGVSQVLNR TYASTLS
Sbjct: 437  KCVESGKAFDVGRAIKLGTISNGLKYSLATGNWGDQQNAMSSKAGVSQVLNRYTYASTLS 496

Query: 487  HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 546
            HLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P
Sbjct: 497  HLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSYSAP 556

Query: 547  ILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEV 606
            + EFL+EWG E  EE + +  P +TK+F+NG W+G+HR+P  L+ TL+ LRR   ++ EV
Sbjct: 557  VGEFLDEWGMEALEENAQSDRP-STKVFLNGVWMGVHREPTQLLNTLKHLRRTEAIHPEV 615

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ-QRESPEDGGWHDLVAK 665
             VVRDIR KELRIYTD GR  RPLF+VEK +LLI    +  L+ +++ P    W +L   
Sbjct: 616  SVVRDIREKELRIYTDSGRVCRPLFVVEKDKLLITPEQVARLRDEKDDPAGYRWDNLFKD 675

Query: 666  GFIEYIDTEEEETTMISMTINDLVQAR-----LHPEEAY-----------ADTYTHCEIH 709
            G +E +D EEEET MI M+  DL  AR      H E+ Y           A +Y+HCEIH
Sbjct: 676  GVVELLDAEEEETVMICMSPEDL-DARSSGQVYHTEDMYDPSSRVKTIIKAGSYSHCEIH 734

Query: 710  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
            PS+ILGVCASI+PFPDHNQSPRNTYQSAMGKQAMGI ++N+  RMDT+A +LYYPQKPL 
Sbjct: 735  PSMILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGISLSNFLVRMDTMANILYYPQKPLA 794

Query: 770  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 829
            TTRA+E L FR LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EK
Sbjct: 795  TTRALEWLKFRDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDMEK 854

Query: 830  KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ 889
              G +  E+F +P R  T+ M+HG+YDKLDDDGL  PG  V GED+IIGKT P+  D  +
Sbjct: 855  TAGQITLEEFEKPSRDTTLRMKHGNYDKLDDDGLIAPGMNVIGEDIIIGKTAPLPPDSQE 914

Query: 890  -GQAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
             GQ + R+TRRD S  L+ +E+G++D VL+T + +G +FVK+RVRS RIPQ+GDKF+SRH
Sbjct: 915  LGQRTDRHTRRDVSTPLKSTESGIIDHVLITVDGEGSKFVKIRVRSTRIPQVGDKFASRH 974

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGT+G+ Y QEDMP++ +GI PD+I+NPHAIPSRMTIG L+EC++ KVA   G+EGDA
Sbjct: 975  GQKGTIGILYRQEDMPFSADGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLNGQEGDA 1034

Query: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            TPFTD+TV+ +S AL   GYQ RG E MY+GHTG++L A ++LGPTYYQRLKHMV+DKIH
Sbjct: 1035 TPFTDLTVEQVSHALRAAGYQSRGLEVMYHGHTGKKLQAQVYLGPTYYQRLKHMVEDKIH 1094

Query: 1068 SRGRGPVQILTRQPAEGRSRDGGLRFGEME-------RDCMIAHGASHFLKERLFDQSDA 1120
            SR RGPVQILTRQP EGRSRDGGLRFGEME       RDCMI+HG + FLKERLFD SDA
Sbjct: 1095 SRARGPVQILTRQPVEGRSRDGGLRFGEMEASQNSLIRDCMISHGIAAFLKERLFDASDA 1154

Query: 1121 YRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
            YR+HVC+ CGL AIANLKK SFECR CKNKT + Q++IPYA KLL QEL AM IA R+
Sbjct: 1155 YRLHVCDICGLTAIANLKKQSFECRSCKNKTAVSQLYIPYAAKLLIQELQAMNIAARL 1212


>gi|121709250|ref|XP_001272355.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
 gi|119400504|gb|EAW10929.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
          Length = 1257

 Score = 1489 bits (3855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 727/1250 (58%), Positives = 918/1250 (73%), Gaps = 79/1250 (6%)

Query: 7    DYEEQHQQE-EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            DY++ +++E  +D EE IT ED W VIS++F+ KGLV QQLDSFDEF+ +TMQE+V+E  
Sbjct: 3    DYDDAYEEEFYDDMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFVSSTMQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETI---YKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
             + +    Q  P    +    +   Y++ FG + LS+P +TE DG T  + P+ ARLRNL
Sbjct: 63   QVTL---DQTLPPADDEVDPVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNL 119

Query: 123  TYSAPLYVDVTKRV-------IKKGHDGEEVTETQDFTK--------------------- 154
            TY++PLY+ +TKR+       I    D E V +  +  K                     
Sbjct: 120  TYASPLYLGITKRIMEGRERLIADREDDETVPDADEDRKARGTYLQWEQKELPADQAKEE 179

Query: 155  -VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 213
             VFIGK+PIML+S YC L   SE+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V
Sbjct: 180  TVFIGKMPIMLKSKYCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTV 239

Query: 214  YVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 273
             VFKK  P+   YVAE+RS  E  +R  S + +++ ++  +  G  G  IR+TLPY++T+
Sbjct: 240  QVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTD 299

Query: 274  IPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGA 333
            IPI++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG+
Sbjct: 300  IPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGS 359

Query: 334  T-VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDR 392
            +   +  ++R++YA+EI+QKE+LPH+   +  ET+KA++ GY++HRLL CALGRR  DDR
Sbjct: 360  SQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDR 419

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFR+LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLK
Sbjct: 420  DHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLK 479

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            Y+LATGNWG Q  AA ++AGVSQVL+R TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 480  YALATGNWGEQKKAASSKAGVSQVLSRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTH 539

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P AT
Sbjct: 540  WGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNAT 599

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG+HRDP  LV T+  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF
Sbjct: 600  KVFVNGVWVGVHRDPAHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLF 659

Query: 632  IVEKQ-------RLLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEYIDT 673
            +++          L++ K  I  L+Q +E P D           GW  LV  G +EY+D 
Sbjct: 660  VIDNDPKSENCGSLVLNKEHIRKLEQDKELPPDLDPEERRERYFGWDGLVKSGVVEYVDA 719

Query: 674  EEEETTMISMTINDL-VQARLH-----PEEAYAD--------------TYTHCEIHPSLI 713
            EEEE  MISMT  DL +  +L      PEE   D              T+THCEIHPS+I
Sbjct: 720  EEEEHIMISMTPEDLEISKQLQAGYALPEEELNDPNKRVRSILSQRAHTWTHCEIHPSMI 779

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+
Sbjct: 780  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRS 839

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRS+F+R+Y D EK +G 
Sbjct: 840  MEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSMFYRTYTDTEKMVGL 899

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 892
             V E F +P RS+T+GMR G+YDKLD+DG+  PG RVSGED+IIGKT P++ + E  GQ 
Sbjct: 900  TVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQR 959

Query: 893  SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
            ++ +T+ D S  LR +E G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 960  TKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKG 1019

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 1020 TIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 1079

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
            DVTVD++S+ L + GYQ RGFE MYNGHTGR++ A +FLGPTYYQRL+HMVDDKIH+R R
Sbjct: 1080 DVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKMVAQVFLGPTYYQRLRHMVDDKIHARAR 1139

Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
            GP QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL
Sbjct: 1140 GPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGL 1199

Query: 1132 IA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            +  IA LKK  FECR C NK  I QVHIPYA KLLFQEL AM IA RM T
Sbjct: 1200 MTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNIAARMFT 1249


>gi|260826766|ref|XP_002608336.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
 gi|229293687|gb|EEN64346.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
          Length = 1104

 Score = 1486 bits (3846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 732/1115 (65%), Positives = 868/1115 (77%), Gaps = 45/1115 (4%)

Query: 6    YDYEEQHQQEEEDEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            ++ +E++  +EEDE +EIT    QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV
Sbjct: 2    FEIDEEYTYQEEDETDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIV 61

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            ++S  I+++ E+QH   +        Y ++F QIYLSKP   E DG  + + P  ARLRN
Sbjct: 62   EDSPQIDLQAEAQHLTMEAE--VPPRYLLNFEQIYLSKPTHWEKDGAPSPMMPNEARLRN 119

Query: 122  LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 181
            LTYSAPLYVD+TK ++K   DGEE  ETQ   K FIGK+PIMLRS+YC L   +++DLTE
Sbjct: 120  LTYSAPLYVDITKTIVK---DGEERIETQ-HQKTFIGKIPIMLRSTYCLLSGLTDRDLTE 175

Query: 182  LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP 241
            L ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYA+  E+RS  E  +RP 
Sbjct: 176  LNECPLDPGGYFIINGSEKVLIAQEKMATNSVYVFAKKD-SKYAFTGEIRSCLEHSSRPT 234

Query: 242  STMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 299
            ST++V ML+R  T  +  + GQ I A LPYIR EIPIIIVFRALGFV+D+DILEHI YDF
Sbjct: 235  STLWVHMLARGGTGQRKSAIGQRIVAVLPYIRQEIPIIIVFRALGFVSDRDILEHIIYDF 294

Query: 300  QDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVG 359
             D +MME+L+PSL+EAFVIQ Q VAL++IG RGA  GVT+DKRIKYA+EILQKEMLPHVG
Sbjct: 295  DDPEMMEMLKPSLDEAFVIQEQNVALNFIGARGAKPGVTKDKRIKYAREILQKEMLPHVG 354

Query: 360  TGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 419
              D+CETKKAY+ GYI+HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LF+ LT
Sbjct: 355  ISDYCETKKAYFLGYIVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAYLFRGLFKNLT 414

Query: 420  RDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNR 478
            ++VR Y QK +D GKD NL+ AIK + IT GLKYSLATGNWG Q  A   RAGVSQVLNR
Sbjct: 415  KEVRIYAQKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNR 474

Query: 479  LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE---------------- 522
            LT+ASTLSHLRRLNSPIGR+GKLAKPRQLHNS WGM+CPAETPE                
Sbjct: 475  LTFASTLSHLRRLNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMAYI 534

Query: 523  ------GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
                  GQA GLVKNLALM YI+VGS   PILEFLEEW  EN EE++P+ I  ATKIFVN
Sbjct: 535  SMVHDNGQAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEVAPSAIANATKIFVN 594

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK 635
            GCWVG+HRDPE L+ TL++LRR++D + +EV +VRDIR +E+RI+TD GR  RPL IVEK
Sbjct: 595  GCWVGVHRDPEQLMNTLKKLRRQMDIIVSEVSMVRDIREREIRIFTDAGRICRPLLIVEK 654

Query: 636  QRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP 695
            Q+LL+KK  +  L++RE   +  W DLVA G +EYIDT EEET M++MT +DL    +  
Sbjct: 655  QKLLLKKHHVDMLKEREY-NNYSWQDLVAGGVVEYIDTLEEETVMLAMTPDDLQDKGV-- 711

Query: 696  EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
              AY  TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMD
Sbjct: 712  --AYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMD 769

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            TLA+VLYYPQKPLVTTR+ME+L FR+LPAGINAIVAIA Y+GYNQEDSVIMN S+IDRG 
Sbjct: 770  TLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGL 829

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRS+F+RSY++ E K G   +E F +P R    GMR+  YDKLDDDG+  PG RVSGEDV
Sbjct: 830  FRSVFYRSYKESESKKGLDQEEIFEKPTRDEVTGMRNAIYDKLDDDGIIAPGVRVSGEDV 889

Query: 876  IIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            IIGKT   P ++DE +    R+T+RD S  LR SETG+VDQV+++ N +G +F KVRVRS
Sbjct: 890  IIGKTVTLPENEDELESTTKRFTKRDSSTFLRSSETGIVDQVMVSINQEGYKFCKVRVRS 949

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
            VRIPQIGDKF+SRHGQKGT G+TY QEDMP+T EGI+PDII+NPHA+PSRMTIG LIEC+
Sbjct: 950  VRIPQIGDKFASRHGQKGTCGITYRQEDMPFTAEGISPDIIINPHAVPSRMTIGHLIECL 1009

Query: 994  MGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1052
             GKV+A+ G+ GDATPF D V V  IS  LH+ GY +RG E +YNG TGR+L+  +F+GP
Sbjct: 1010 QGKVSANKGEIGDATPFNDAVNVQKISNLLHEYGYHLRGNEVVYNGFTGRKLSTQLFIGP 1069

Query: 1053 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1087
            TYYQRLKHMVDDKIHSR RGPVQ L RQP EGRSR
Sbjct: 1070 TYYQRLKHMVDDKIHSRARGPVQNLNRQPMEGRSR 1104


>gi|302417061|ref|XP_003006362.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
            VaMs.102]
 gi|261355778|gb|EEY18206.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
            VaMs.102]
          Length = 1260

 Score = 1485 bits (3844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 727/1257 (57%), Positives = 926/1257 (73%), Gaps = 83/1257 (6%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            M  +YD E  +   EED+   IT ED W VIS++F+ KGLV QQ+DSFDEF  +T+QE++
Sbjct: 1    MATEYDEEFDYDGYEEDDAS-ITPEDCWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELI 59

Query: 62   DESADIEIRPESQHNPGQQSDFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARL 119
            DE + I +    Q NP   SD A  +  Y++ FG + +S+P +TE+DG+ +TL P   R 
Sbjct: 60   DEYSHITL---DQPNPASDSDRAIALRRYEVKFGTVMVSRPSITEADGKVSTLLPYECRD 116

Query: 120  RNLTYSAPLYVDVTKRVI------------------KKGHDGEEVTETQ----------- 150
            RNLTY++PLYV +TK+V                   + G  GE  T  +           
Sbjct: 117  RNLTYASPLYVRITKKVSIAVENQIPLNELDDEQHDEMGRTGEHPTRLEWEEEESGDDPG 176

Query: 151  -DFTK-------VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
             D  K       +FIG++PIM++S  C L + SE DL  L ECPYDQGGYF+INGSEKVL
Sbjct: 177  ADKDKPEDMKDMIFIGRMPIMVKSKICHLSRESENDLFMLNECPYDQGGYFVINGSEKVL 236

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            IAQE+ + N V VFKK QP+ ++Y AE+RS  E  +R  S++ +++ S++ AKGG  GQ 
Sbjct: 237  IAQERSAANIVQVFKKAQPSPFSYTAEIRSALEKGSRLISSLMLKLHSKSPAKGGV-GQT 295

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
            I  TLPY++ +IPI IVFRA G V+D+DIL HICYD  DTQM+E+LRP +EEAF++Q++ 
Sbjct: 296  IHCTLPYVKVDIPIGIVFRAFGIVSDEDILNHICYDRNDTQMLEMLRPCIEEAFIVQDRN 355

Query: 323  VALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 381
            VALD+IGKRG +   +TR+KR++ AKEILQKE LPH+   +  ET+KA++ GY+ H+LL 
Sbjct: 356  VALDWIGKRGNSNHTMTREKRVRSAKEILQKETLPHISQSEGSETRKAFFLGYMTHKLLQ 415

Query: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 441
            CALGRR  DDRDH+G KRLDLAGPLL  LFR + R++ +++  ++++CV++ +  +L   
Sbjct: 416  CALGRRDIDDRDHFGKKRLDLAGPLLAKLFRTIVRRMNQELSGHLKRCVESNRQFSLTLG 475

Query: 442  IKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 500
            +K +T+++GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GK
Sbjct: 476  VKPQTLSNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGK 535

Query: 501  LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
            +AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VG+ A PI++++ + G E  E
Sbjct: 536  IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLE 595

Query: 561  EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIY 620
            E  P   P ATK+F+NG WVG+H+DP +LV  ++  RRR  ++ EV +VRDIR +E +I+
Sbjct: 596  EYEPLRYPNATKVFLNGVWVGVHQDPRVLVPDVQGTRRRNVISHEVSLVRDIRDREFKIF 655

Query: 621  TDYGRCSRPLFIVEK-------QRLLIKKRDII--ALQQRESPEDG-----GWHDLVAKG 666
            +D GR  RP+F+VE+       Q  L+ ++D++     Q+E+P D       W  L   G
Sbjct: 656  SDAGRVMRPVFVVEQSHHGAVPQGSLVLQKDLVNEMRDQQENPPDNPEDKITWQTLAHSG 715

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHP-----EEAYAD---------------TYTHC 706
             IEY+D EEEET+MI MT  DL   RL       EE  ++                YTHC
Sbjct: 716  IIEYLDAEEEETSMICMTPEDLELYRLRKAGHEVEEDISEGPNRRLRTKIAKTTHMYTHC 775

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            EIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQK
Sbjct: 776  EIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQK 835

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
            PL TTR+ME L FR+LPAG NA+VAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D
Sbjct: 836  PLATTRSMEFLKFRELPAGQNAVVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTD 895

Query: 827  EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 886
             EK++G  + E F +P R++T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT+PI+ D
Sbjct: 896  CEKRVGINLVEQFEKPFRNDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPINPD 955

Query: 887  EAQ-GQAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
              + GQ + ++ +RD S  LR +E G++D V+LTTN DGLR+VKVRVR+ +IPQIGDKF+
Sbjct: 956  NQELGQRTMQHVKRDASTPLRSTENGIIDSVILTTNQDGLRYVKVRVRTTKIPQIGDKFA 1015

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV+   G E
Sbjct: 1016 SRHGQKGTIGVTYRQEDMPFTSEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGME 1075

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTDVTVD++S+ L   GYQ RGFE MYNGHTG++L A +F GPTYYQRL+HMVDD
Sbjct: 1076 GDATPFTDVTVDSVSQLLRDQGYQSRGFEVMYNGHTGKKLRAQVFFGPTYYQRLRHMVDD 1135

Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
            KIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVH
Sbjct: 1136 KIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVH 1195

Query: 1125 VCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            VCE CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1196 VCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1252


>gi|119489058|ref|XP_001262829.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
            181]
 gi|119410987|gb|EAW20932.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
            181]
          Length = 1255

 Score = 1485 bits (3844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 723/1228 (58%), Positives = 906/1228 (73%), Gaps = 70/1228 (5%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            IT ED W VIS++F+ KGLV QQLDSFDEFI +TMQE+V+E   + +      +  +   
Sbjct: 20   ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSDDEDDP 79

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK---- 138
                 Y++ FG + LS+P +TE DG T  + P+ ARLRNLTY++PLY+ +TKR+++    
Sbjct: 80   VVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRER 139

Query: 139  --KGHDGEEVTETQDFTK-----------------------VFIGKVPIMLRSSYCTLYQ 173
                 D ++V    D  +                       VFIGK+PIML+S YC L  
Sbjct: 140  LIADRDEDDVAPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKYCILKD 199

Query: 174  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233
             SE+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK  P+   YVAE+RS 
Sbjct: 200  LSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSA 259

Query: 234  AESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293
             E  +R  S + +++ ++  +  G  G  IR+TLPY++T+IPI++VFRALG V+D+DIL 
Sbjct: 260  VEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILN 319

Query: 294  HICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDKRIKYAKEILQK 352
            HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++   +  ++R++YA+EI+QK
Sbjct: 320  HICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQK 379

Query: 353  EMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 412
            E+LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR
Sbjct: 380  ELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFR 439

Query: 413  MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAG 471
            +LF ++TRD++ YVQ+CV+  +++ L   IKA T+T GLKY+LATGNWG Q  AA ++AG
Sbjct: 440  VLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASSKAG 499

Query: 472  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 531
            VSQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKN
Sbjct: 500  VSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKN 559

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 591
            LALM YITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV 
Sbjct: 560  LALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRDPAHLVN 619

Query: 592  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRD 644
            T+  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+V+          L++ K  
Sbjct: 620  TMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKEH 679

Query: 645  IIALQQRE------SPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQAR 692
            I  L+Q +       PED      GW  LV  G +EY+D EEEET MI MT  DL +  +
Sbjct: 680  IRKLEQDKELPADLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQ 739

Query: 693  LH-----PEE------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            L      PEE              A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 740  LQAGYALPEEDDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 799

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACY
Sbjct: 800  SAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACY 859

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+GMR G+Y
Sbjct: 860  SGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDTEKMVGLTVVERFEKPMRSDTIGMRKGTY 919

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 913
            DKLD+DG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E G+VD
Sbjct: 920  DKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVD 979

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QVL++T+ D L+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG++PD+
Sbjct: 980  QVLVSTSNDDLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSPDL 1039

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD+IS+ L + GYQ RGFE
Sbjct: 1040 IINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFE 1099

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
             MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRF
Sbjct: 1100 VMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 1159

Query: 1094 GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTD 1152
            GEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR C NK  
Sbjct: 1160 GEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHR 1219

Query: 1153 IVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I QVHIPYA KLLFQEL AM IA RM T
Sbjct: 1220 ISQVHIPYAAKLLFQELAAMNIAARMFT 1247


>gi|303315773|ref|XP_003067891.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
            delta SOWgp]
 gi|240107567|gb|EER25746.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1258

 Score = 1484 bits (3842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 724/1249 (57%), Positives = 910/1249 (72%), Gaps = 74/1249 (5%)

Query: 7    DYEEQHQQEEEDEEEE-ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            +YE+++ ++   E EE IT ED W VIS++FE KGLV QQLDSFDEFI  TMQE+V+E  
Sbjct: 3    EYEDEYGEDGYYEAEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
             + +      +           Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY+
Sbjct: 63   QVTLDQTIAPDEDDPDPVMVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYA 122

Query: 126  APLYVDVTKRVIK------------------KGHDGEEVTET-------------QDFTK 154
            +PLY+ +TK++ +                  KG +      T              D   
Sbjct: 123  SPLYLGITKKIAEGRERSLAERDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEEN 182

Query: 155  VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVY 214
            +FIGK+PIML+S YC L    E  L    ECPYD GGYFIINGSEKVLIAQE+ + N V 
Sbjct: 183  IFIGKMPIMLKSKYCILKDLGEHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQ 242

Query: 215  VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 274
            VFKK  P+   YVAE+RS  E  +R  S + +++ ++  +  G  G  IR+TLPYI+T+I
Sbjct: 243  VFKKAPPSPTPYVAEIRSAVEKGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDI 302

Query: 275  PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT 334
            PI++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++
Sbjct: 303  PIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSS 362

Query: 335  -VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 393
               +  +KR++YA++I+QKE LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRD
Sbjct: 363  PTSMNHEKRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRD 422

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G KRLDLAGPLL  LFR+LF +LT+D+  YVQ+CV+  + + L   +KA T+T GLKY
Sbjct: 423  HFGKKRLDLAGPLLANLFRVLFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKY 482

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            +LATGNWG Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 483  ALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 542

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            G++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P +TK
Sbjct: 543  GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTK 602

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            IFVNG WVG+HRDP  LV T++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+
Sbjct: 603  IFVNGVWVGVHRDPSHLVSTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFV 662

Query: 633  VEKQ-------RLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTE 674
            V+          L++ K  I  L+  +E P D           GW  LV  G +EY+D E
Sbjct: 663  VDNDPKSENSGSLVLTKEHIRKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAE 722

Query: 675  EEETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILG 715
            EEET MI M+  DL      QA   PEE  +D              T+THCEIHPS+ILG
Sbjct: 723  EEETIMIVMSPEDLEVSKQYQAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILG 782

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            +CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME
Sbjct: 783  ICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME 842

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
             L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V
Sbjct: 843  FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTV 902

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR 894
             E F +P RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++
Sbjct: 903  VERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTK 962

Query: 895  -YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
             +T+ D S  LR +E+G+VDQVL++T+ + L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+
Sbjct: 963  QHTKLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTI 1022

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            G+T+ QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDV
Sbjct: 1023 GVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDV 1082

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TVD++S  L + GYQ RGFE MYNGHTGR+L A IFLGPTYYQRL+HMVDDKIH+R RGP
Sbjct: 1083 TVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGP 1142

Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
             QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +R+H+C+ CGL+ 
Sbjct: 1143 TQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRIHICDICGLMT 1202

Query: 1134 -IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
             IA LKK  FECR CKNK  I QVHIPYA KLLFQELM+M IA RM TK
Sbjct: 1203 PIAKLKKGDFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARMYTK 1251


>gi|392867393|gb|EAS29377.2| DNA-directed RNA polymerase II subunit RPB2 [Coccidioides immitis RS]
          Length = 1258

 Score = 1484 bits (3842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 725/1249 (58%), Positives = 910/1249 (72%), Gaps = 74/1249 (5%)

Query: 7    DYEEQHQQEEEDEEEE-ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            +YE+++ ++   E EE IT ED W VIS++FE KGLV QQLDSFDEFI  TMQE+V+E  
Sbjct: 3    EYEDEYGEDGYYEAEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
             + +      +           Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY+
Sbjct: 63   QVTLDQTIAPDEDDPDPVMVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYA 122

Query: 126  APLYVDVTKRVIK------------------KGHDGEEVTET-------------QDFTK 154
            +PLY+ +TK++ +                  KG +      T              D   
Sbjct: 123  SPLYLGITKKIAEGRERSLAERDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEEN 182

Query: 155  VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVY 214
            +FIGK+PIML+S YC L    E  L    ECPYD GGYFIINGSEKVLIAQE+ + N V 
Sbjct: 183  IFIGKMPIMLKSKYCILKDLGEHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQ 242

Query: 215  VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 274
            VFKK  P+   YVAE+RS  E  +R  S + +++ ++  +  G  G  IR+TLPYI+T+I
Sbjct: 243  VFKKAPPSPTPYVAEIRSAVEKGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDI 302

Query: 275  PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT 334
            PI++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++
Sbjct: 303  PIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSS 362

Query: 335  -VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 393
               +  +KR++YA++I+QKE LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRD
Sbjct: 363  PTSMNHEKRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRD 422

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G KRLDLAGPLL  LFR+LF +LT+D+  YVQ+CV+  + + L   +KA T+T GLKY
Sbjct: 423  HFGKKRLDLAGPLLANLFRVLFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKY 482

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            +LATGNWG Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 483  ALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 542

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            G++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P +TK
Sbjct: 543  GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTK 602

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            IFVNG WVG+HRDP  LV T++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+
Sbjct: 603  IFVNGVWVGVHRDPSHLVSTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFV 662

Query: 633  VEKQ-------RLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTE 674
            V+          L++ K  I  L+  +E P D           GW  LV  G +EY+D E
Sbjct: 663  VDNDPKSENSGSLVLTKEHIHKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAE 722

Query: 675  EEETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILG 715
            EEET MI M+  DL      QA   PEE  +D              T+THCEIHPS+ILG
Sbjct: 723  EEETIMIVMSPEDLEVSKQYQAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILG 782

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            +CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME
Sbjct: 783  ICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME 842

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
             L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V
Sbjct: 843  FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTV 902

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR 894
             E F +P RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++
Sbjct: 903  VERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTK 962

Query: 895  -YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
             +T+ D S  LR +E+G+VDQVL++T+ + L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+
Sbjct: 963  QHTKLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTI 1022

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            G+T+ QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDV
Sbjct: 1023 GVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDV 1082

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TVD++S  L + GYQ RGFE MYNGHTGR+L A IFLGPTYYQRL+HMVDDKIH+R RGP
Sbjct: 1083 TVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGP 1142

Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
             QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+ 
Sbjct: 1143 TQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMT 1202

Query: 1134 -IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
             IA LKK  FECR CKNK  I QVHIPYA KLLFQELM+M IA RM TK
Sbjct: 1203 PIAKLKKGDFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARMYTK 1251


>gi|346971009|gb|EGY14461.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium dahliae
            VdLs.17]
          Length = 1260

 Score = 1484 bits (3842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 723/1259 (57%), Positives = 924/1259 (73%), Gaps = 87/1259 (6%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            M  +YD E  +   EED+   IT ED W VIS++F+ KGLV QQ+DSFDEF  +T+QE++
Sbjct: 1    MAAEYDEEFDYDGYEEDDAS-ITPEDCWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELI 59

Query: 62   DESADIEIRPESQHNPGQQSDFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARL 119
            DE + I +    Q NP   SD A  +  Y++ FG + +S+P +TE+DG+ +TL P   R 
Sbjct: 60   DEYSHITL---DQPNPASDSDRAIALRRYEVKFGTVMVSRPSITEADGKVSTLLPYECRD 116

Query: 120  RNLTYSAPLYVDVTKRVI---------------------------------------KKG 140
            RNLTY++PLYV +TK+V                                          G
Sbjct: 117  RNLTYASPLYVRITKKVSIAVENQIPLNELDDEQHDEMARTGEHPTRLEWEEEESGDDPG 176

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
             D ++  + +D   +FIG++PIM++S  C L + SE DL  L ECPYDQGGYF+INGSEK
Sbjct: 177  ADKDKPEDMKDM--IFIGRMPIMVKSKICHLSRESENDLFMLNECPYDQGGYFVINGSEK 234

Query: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
            VLIAQE+ + N V VFKK QP+ ++Y AE+RS  E  +R  S++ +++ S + AKGG  G
Sbjct: 235  VLIAQERSAANIVQVFKKAQPSPFSYTAEIRSALEKGSRLISSLMLKLHSTSPAKGGV-G 293

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
            Q I  TLPY++ +IPI IVFRA G V+D+DIL HICYD  DTQM+E+LRP +EEAF++Q+
Sbjct: 294  QTIHCTLPYVKVDIPIGIVFRAFGIVSDEDILNHICYDRNDTQMLEMLRPCIEEAFIVQD 353

Query: 321  QQVALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
            + VALD+IGKRG +   +TR+KR++ AKEILQKE LPH+   +  ET+KA++ GY+ H+L
Sbjct: 354  RNVALDWIGKRGNSNHTMTREKRVRSAKEILQKETLPHISQSEGSETRKAFFLGYMTHKL 413

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            L CALGRR  DDRDH+G KRLDLAGPLL  LFR + R++ +++  ++++CV++ +  +L 
Sbjct: 414  LQCALGRRDIDDRDHFGKKRLDLAGPLLAKLFRTIVRRMNQELSGHLKRCVESNRQFSLT 473

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
              +K +T+++GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+
Sbjct: 474  LGVKPQTLSNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRD 533

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VG+ A PI++++ + G E 
Sbjct: 534  GKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEV 593

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELR 618
             EE  P   P ATK+F+NG WVG+H+DP +LV  ++  RRR  ++ EV +VRDIR +E +
Sbjct: 594  LEEYEPLRYPNATKVFLNGVWVGVHQDPRVLVPDVQGTRRRNVISHEVSLVRDIRDREFK 653

Query: 619  IYTDYGRCSRPLFIVEK-------QRLLIKKRDII--ALQQRESPEDG-----GWHDLVA 664
            I++D GR  RP+F+VE+       Q  L+ ++D++     Q+E+P D       W  L  
Sbjct: 654  IFSDAGRVMRPVFVVEQSHHGAVPQGSLVLQKDLVNEMRDQQENPPDNPEDKITWQTLAH 713

Query: 665  KGFIEYIDTEEEETTMISMTINDLVQARLHP-----EEAYAD---------------TYT 704
             G IEY+D EEEET+MI MT  DL   RL       EE  ++                YT
Sbjct: 714  SGIIEYLDAEEEETSMICMTPEDLELYRLRKAGHEVEEDISEGPNRRLRTKIAKTTHMYT 773

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYP
Sbjct: 774  HCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYP 833

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPL TTR+ME L FR+LPAG NA+VAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY
Sbjct: 834  QKPLATTRSMEFLKFRELPAGQNAVVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSY 893

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
             D EK++G  + E F +P R++T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT+PI+
Sbjct: 894  TDCEKRVGINLVEQFEKPFRNDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPIN 953

Query: 885  QDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 942
             D  + GQ + ++ +RD S  LR +E G++D V+LTTN DGLR+VKVRVR+ +IPQIGDK
Sbjct: 954  PDNQELGQRTMQHVKRDASTPLRSTENGIIDSVILTTNQDGLRYVKVRVRTTKIPQIGDK 1013

Query: 943  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
            F+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV+   G
Sbjct: 1014 FASRHGQKGTIGVTYRQEDMPFTSEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKG 1073

Query: 1003 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             EGDATPFTDVTVD++S+ L   GYQ RGFE MYNGHTG++L A +F GPTYYQRL+HMV
Sbjct: 1074 MEGDATPFTDVTVDSVSQLLRDQGYQSRGFEVMYNGHTGKKLRAQVFFGPTYYQRLRHMV 1133

Query: 1063 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 1122
            DDKIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+R
Sbjct: 1134 DDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFR 1193

Query: 1123 VHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            VH+CE CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1194 VHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1252


>gi|390337473|ref|XP_003724570.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Strongylocentrotus purpuratus]
          Length = 1142

 Score = 1483 bits (3839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 733/1189 (61%), Positives = 887/1189 (74%), Gaps = 59/1189 (4%)

Query: 1    MMEDDYDYEEQHQQEEEDE-EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQE 59
            M E D   EE + +EE D+   +  QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q 
Sbjct: 1    MFEQD---EEVYGEEETDDLTPDQWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQR 57

Query: 60   IVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARL 119
            IV++S  ++++ E+QH   +Q     T Y + F QIYLSKP   E DG  + + P  ARL
Sbjct: 58   IVEDSPAVDLQAEAQHMTTEQE--VPTRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARL 115

Query: 120  RNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDL 179
            RNLTYSAPLYVD+TK VIK G D +E        K FIGK+PIMLRS+YC L   +++DL
Sbjct: 116  RNLTYSAPLYVDITKTVIKDGEDPQETIHQ----KTFIGKIPIMLRSTYCLLNGLTDRDL 171

Query: 180  TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNR 239
            TEL ECP D GGYFIINGSEKVLIAQEKMSTN VYVF K+  +KYA+ AE RS  E  +R
Sbjct: 172  TELNECPLDPGGYFIINGSEKVLIAQEKMSTNSVYVFAKKD-SKYAFTAECRSCLEHSSR 230

Query: 240  PPSTMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY 297
            P ST++V M+++    A+  + GQ + + LPYIR E+PI++VFRALGFVAD+DILEHI Y
Sbjct: 231  PTSTLWVHMMAKGGQGARKSAIGQRMISVLPYIRQEVPIMVVFRALGFVADRDILEHIIY 290

Query: 298  DFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPH 357
            DF D +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT+++RIKYA+EILQKEMLPH
Sbjct: 291  DFDDPEMMEMVKPSLDEAFVIQEQSVALNFIGARGARPGVTKERRIKYAREILQKEMLPH 350

Query: 358  VGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRK 417
            VG  DFCETKKAY+ GY +HRLLL ++GRR  DDRDHYGNKRLDLAGPLL  LFR LF+ 
Sbjct: 351  VGVSDFCETKKAYFLGYCVHRLLLASIGRREVDDRDHYGNKRLDLAGPLLAFLFRALFKN 410

Query: 418  LTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVL 476
            L ++VR Y QK +D GKD N++ AIK + IT GLKYSLATGNWG Q  A   RAGVSQV 
Sbjct: 411  LLKEVRMYAQKFIDKGKDFNMELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVR 470

Query: 477  NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 536
            + L       H                                  +G A GLVKNLALM 
Sbjct: 471  HILHSFIVYYH----------------------------------KGHAVGLVKNLALMA 496

Query: 537  YITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRL 596
            YI+VGS   PILEFLEEW  EN EEI+P+ I +ATKIFVNGCWVGIHRDPE L+ TL++L
Sbjct: 497  YISVGSQPSPILEFLEEWSMENLEEIAPSAINEATKIFVNGCWVGIHRDPEQLMNTLKKL 556

Query: 597  RRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPE 655
            RR++D+  +EV +VRDIR +E+RI+TD GR  RPL IVE Q+LL+KKR +  L++RE   
Sbjct: 557  RRQMDIIVSEVSMVRDIREREIRIFTDAGRICRPLLIVENQKLLLKKRHVSMLKEREY-N 615

Query: 656  DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILG 715
            +  W DLVA G +EYIDT EEET M++MT +DL +  +     Y  TYTHCEIHPS+ILG
Sbjct: 616  NYSWQDLVASGVVEYIDTMEEETVMLAMTPDDLQEKGM----GYCSTYTHCEIHPSMILG 671

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            VCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDTLA+VLYYPQKPL TTR+ME
Sbjct: 672  VCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLTTTRSME 731

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
            +L FR+LPAGIN++VAIA Y+GYNQEDSVI+N S+IDRGFFRS+F+RSY+D E K     
Sbjct: 732  YLRFRELPAGINSVVAIASYTGYNQEDSVILNASAIDRGFFRSVFYRSYKDAESK-AVDK 790

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE-DVIIGKTTPISQ--DEAQGQA 892
             E F +P R    GMR+  YDKL++DG+ PPG+RVSG  D  I     + +     +G +
Sbjct: 791  DEMFEKPSRETCQGMRNAVYDKLEEDGIIPPGSRVSGNRDFXICVNXYVXRPFKALEGTS 850

Query: 893  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
             R+T+RD S  +R +ETG++DQV+++ N DG +F K++VRSVR PQIGDKF+SRHGQKGT
Sbjct: 851  RRFTKRDCSTFMRSTETGIIDQVMVSINQDGYKFCKIKVRSVRTPQIGDKFASRHGQKGT 910

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
             G+ Y  EDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV++  G+ GDATPF D
Sbjct: 911  CGIKYRVEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSSKGEIGDATPFND 970

Query: 1013 -VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
             V V  IS  LH+ GY  RG E ++ G TGR++   +FLGPTYYQRLKHMVDDKIHSR R
Sbjct: 971  SVNVQKISNLLHEYGYHQRGNEVLFCGFTGRKIGTQVFLGPTYYQRLKHMVDDKIHSRAR 1030

Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
            GPVQIL RQP EGRSRDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD YRVHVC  CGL
Sbjct: 1031 GPVQILNRQPMEGRSRDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHVCNFCGL 1090

Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            IAIANL+ N+FECRGCKNKT I QV +PYACKLLFQELM+M IAPRM+ 
Sbjct: 1091 IAIANLRNNTFECRGCKNKTQISQVRLPYACKLLFQELMSMCIAPRMMV 1139


>gi|156065749|ref|XP_001598796.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980]
 gi|154691744|gb|EDN91482.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1267

 Score = 1481 bits (3833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 726/1261 (57%), Positives = 922/1261 (73%), Gaps = 89/1261 (7%)

Query: 7    DYEEQHQQEEEDEEEE-ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            DYEE ++ ++  EE+  IT ED W VIS++F+ KGLV QQ+DSFDEF+Q TMQE+V+E++
Sbjct: 3    DYEEGYEYDDFGEEDAGITAEDCWTVISSFFDAKGLVSQQIDSFDEFVQTTMQELVEENS 62

Query: 66   DIEIRPESQHNPGQQSD--FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
             + +    Q+NP   +D   A   Y+I FG I LS+P MTE DG T  + P+ ARLRNLT
Sbjct: 63   QLTL---DQNNPPSSNDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLT 119

Query: 124  YSAPLYVDVTKRV--------------------IKKG--HDGEEVTETQDFT-------- 153
            YS+PLY+++TK                      +  G  H    V E +D          
Sbjct: 120  YSSPLYIEMTKSTQVAVERPVPLNELDDEQEADLANGGEHPTRLVWEYEDGDPDGAKGGP 179

Query: 154  ---KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 210
               +V++GK+P+ML+S YC L    E DL    ECPYDQGGYFIINGSEKVLIAQE+ + 
Sbjct: 180  APERVYVGKLPMMLKSEYCFLKNCDEDDLYGWNECPYDQGGYFIINGSEKVLIAQERSAA 239

Query: 211  NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYI 270
            N V VFKK      +Y+AE+RS  E  +R  S++ +++  +  +  G  G+ +++TLPYI
Sbjct: 240  NIVQVFKKPANQAVSYLAEIRSALEKGSRLISSLQIKLYDKGDSGRGGFGKTVKSTLPYI 299

Query: 271  RTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGK 330
            + +IPI IVFRALG V+D+DIL HICYD  DTQM+E+L+P +EEAFVIQ+++VALD+IGK
Sbjct: 300  KQDIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALDFIGK 359

Query: 331  RGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 390
            RG    +TRDKRIKYA++I+QKE+LPH+   +  ET+KA++ GY++H+LL CALGRR  D
Sbjct: 360  RGNGTSLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETD 419

Query: 391  DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSG 450
            DRDH+G KRLDLAGPLL  LFR LFR+LT DV  Y+Q+CV+N ++ NL   +K+ TIT+G
Sbjct: 420  DRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNG 479

Query: 451  LKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 509
            LKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN
Sbjct: 480  LKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHN 539

Query: 510  SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ 569
            + WG++CPAETPEGQACGLVKNLALM Y+TVG+ + PI+EF+ +   E  EE  P   P 
Sbjct: 540  THWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPN 599

Query: 570  ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRP 629
            ATK+FVNG WVG+HRDP  LVK ++ LRR   ++ EV ++R+IR +E +I+TD GR  RP
Sbjct: 600  ATKVFVNGVWVGVHRDPAHLVKCVQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRP 659

Query: 630  LFIVE-------KQRLLIKKRDIIALQQRESPEDG------------GWHDLVAKGFIEY 670
            L +++       K  L++ K  I  L+  +S                G+  L+  G +EY
Sbjct: 660  LLVIDNDPDSPNKGNLVLNKDHIRRLEDDQSLPSNMDKDEKVHHGYYGFQGLINDGVVEY 719

Query: 671  IDTEEEETTMISMTINDLVQAR-------LHPEEA-------------YADTYTHCEIHP 710
            +D EEEET MI+MT  DL  +R       + P+++              A  +THCEIHP
Sbjct: 720  LDAEEEETVMITMTPEDLDISRQLQAGYQIRPDDSGDLNKRVKAPINPTAHVWTHCEIHP 779

Query: 711  SLILGVCASIIPFPDHNQ-------SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            S+ILG+CASIIPFPDHNQ       SPRN YQSAMGKQAMG+++TN+  RMDT+A +LYY
Sbjct: 780  SMILGICASIIPFPDHNQANSVATKSPRNCYQSAMGKQAMGVFLTNFDVRMDTMANILYY 839

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+R+
Sbjct: 840  PQKPLATTRSMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRA 899

Query: 824  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 883
            Y D+EK++G  V E F +P RS+T+ ++ G+Y+KLDDDG+  PG RV+G D+IIGKT PI
Sbjct: 900  YTDQEKRIGMNVVEQFEKPYRSDTLKLKQGTYEKLDDDGIVAPGVRVTGADIIIGKTAPI 959

Query: 884  SQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 941
            + D E  GQ ++ + +RD S  LR +E+G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGD
Sbjct: 960  APDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGD 1019

Query: 942  KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1001
            KF+SRHGQKGT+G+TY Q+DMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  
Sbjct: 1020 KFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 1079

Query: 1002 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 1061
            G EGDATPFT+VTVD++SK L   GY  RGFE MY+GHTGR++ A +FLGPTYYQRL+HM
Sbjct: 1080 GLEGDATPFTEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHM 1139

Query: 1062 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 1121
            VDDKIH+R RGPVQILTRQP EGR+RDGGLRFGEMERDCMI+HGAS FLKERLF+ SDA+
Sbjct: 1140 VDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAF 1199

Query: 1122 RVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            RVH+C+ CGL+  IA +   SFECR CKNKT I Q+HIPYA KLLFQEL AM IA RM T
Sbjct: 1200 RVHICDICGLMTPIAKINTGSFECRPCKNKTKISQIHIPYAAKLLFQELAAMNIATRMFT 1259

Query: 1181 K 1181
            K
Sbjct: 1260 K 1260


>gi|326475036|gb|EGD99045.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton tonsurans CBS
            112818]
          Length = 1258

 Score = 1479 bits (3830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 719/1242 (57%), Positives = 909/1242 (73%), Gaps = 82/1242 (6%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            + EE IT ED W VISA+FE KGLV QQLDSFDEFI  TMQE+V+E   + +      + 
Sbjct: 14   EAEEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSD 73

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
             +        Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY++PLY+ ++K+++
Sbjct: 74   DEPDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIM 133

Query: 138  KKGHDGEE-----------------------------------VTETQDFTKVFIGKVPI 162
                +G E                                   + +  +   +FIGK+PI
Sbjct: 134  ----EGRERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPI 189

Query: 163  MLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 222
            ML+S YC L    E+ L    ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+
Sbjct: 190  MLKSKYCILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPS 249

Query: 223  KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRA 282
               YVAE+RS  E  +R  S + +++LS+  +  G  G  IR+TLPYI+T+IPI++VFRA
Sbjct: 250  PTPYVAEIRSAVEKGSRILSQLSIKLLSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRA 309

Query: 283  LGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDK 341
            LG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++ + + ++K
Sbjct: 310  LGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEK 369

Query: 342  RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
            R++YA++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLD
Sbjct: 370  RVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLD 429

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
            LAGPLL  LFR+LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG
Sbjct: 430  LAGPLLANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWG 489

Query: 462  -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 520
             Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 490  EQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 549

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WV
Sbjct: 550  PEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWV 609

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 636
            G+HRDP  LV T++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 637  ---RLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMIS 682
                L++ K  I  L+  +E P D           GW  LV  G IEY+D EEEET MI 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIV 729

Query: 683  MTINDLVQARLH------PEEAYAD--------------TYTHCEIHPSLILGVCASIIP 722
            MT  DL  ++ +      PEE   D              T+THCEIHPS+ILG+CASIIP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P
Sbjct: 850  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKP 909

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 900
             RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D 
Sbjct: 910  MRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDV 969

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  E
Sbjct: 970  STPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHE 1029

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
            DMP+T EGITPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S 
Sbjct: 1030 DMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSS 1089

Query: 1021 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080
             L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQ
Sbjct: 1090 LLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQ 1149

Query: 1081 PAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKK 1139
            P EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA +KK
Sbjct: 1150 PVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKK 1209

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
              FECR C+NK  I QVHIPYA KLLFQEL +M IA RM TK
Sbjct: 1210 GDFECRACRNKNKISQVHIPYAAKLLFQELASMNIAARMYTK 1251


>gi|296818239|ref|XP_002849456.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
 gi|238839909|gb|EEQ29571.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
          Length = 1258

 Score = 1478 bits (3827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 716/1242 (57%), Positives = 908/1242 (73%), Gaps = 82/1242 (6%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            + EE IT ED W VISA+FE KGLV QQLDSFDEFI  TMQE+V+E   + +        
Sbjct: 14   EAEEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPGD 73

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
             +Q       Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY++PLY+ ++K+++
Sbjct: 74   DEQDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIM 133

Query: 138  KKGHDGEE-----------------------------------VTETQDFTKVFIGKVPI 162
                +G E                                   + +  +   +FIGK+PI
Sbjct: 134  ----EGRERLLSERDDEEEEVEEKGDEERRSRGTYLHWERKPTLEDEAEEENIFIGKMPI 189

Query: 163  MLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 222
            ML+S YC L    E+ L    ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+
Sbjct: 190  MLKSKYCILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPS 249

Query: 223  KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRA 282
               YVAE+RS  E  +R  S + +++ ++  +  G  G  IR+TLPYI+T+IPI++VFRA
Sbjct: 250  PTPYVAEIRSAVEKGSRILSQLSIKLFAKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRA 309

Query: 283  LGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDK 341
            LG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++ + + ++K
Sbjct: 310  LGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEK 369

Query: 342  RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
            R++YA++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLD
Sbjct: 370  RVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLD 429

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
            LAGPLL  LFR+LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG
Sbjct: 430  LAGPLLANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWG 489

Query: 462  -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 520
             Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 490  EQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 549

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WV
Sbjct: 550  PEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWV 609

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 636
            G+HRDP  LV T++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 637  ---RLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMIS 682
                L++ K  I  L+  +E P D           GW  LV  G +EY+D EEEET MI 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVVEYVDAEEEETIMIV 729

Query: 683  MTINDLVQARLH------PEEAYAD--------------TYTHCEIHPSLILGVCASIIP 722
            MT  DL  ++ +      PEE   D              T+THCEIHPS+ILG+CASIIP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDSNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P
Sbjct: 850  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKP 909

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 900
             RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D 
Sbjct: 910  MRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDV 969

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  E
Sbjct: 970  STPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHE 1029

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
            DMP+T EG+TPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S 
Sbjct: 1030 DMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSS 1089

Query: 1021 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080
             L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQ
Sbjct: 1090 LLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQ 1149

Query: 1081 PAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKK 1139
            P EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA +KK
Sbjct: 1150 PVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKK 1209

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
              FECR C+NK  I QVHIPYA KLLFQEL +M IA RM TK
Sbjct: 1210 GDFECRACRNKNKISQVHIPYAAKLLFQELASMNIAARMYTK 1251


>gi|326484701|gb|EGE08711.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton equinum CBS
            127.97]
          Length = 1258

 Score = 1478 bits (3827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/1242 (57%), Positives = 908/1242 (73%), Gaps = 82/1242 (6%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            + EE IT ED W VISA+FE KGLV QQLDSFDEFI  TMQE+V+E   + +      + 
Sbjct: 14   EAEEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSD 73

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
             +        Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY++PLY+ ++K+++
Sbjct: 74   DEPDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIM 133

Query: 138  KKGHDGEE-----------------------------------VTETQDFTKVFIGKVPI 162
                +G E                                   + +  +   +FIGK+PI
Sbjct: 134  ----EGRERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPI 189

Query: 163  MLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 222
            ML+S YC L    E+ L    ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+
Sbjct: 190  MLKSKYCILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPS 249

Query: 223  KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRA 282
               YVAE+RS  E  +R  S + +++ S+  +  G  G  IR+TLPYI+T+IPI++VFRA
Sbjct: 250  PTPYVAEIRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRA 309

Query: 283  LGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDK 341
            LG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++ + + ++K
Sbjct: 310  LGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEK 369

Query: 342  RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
            R++YA++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLD
Sbjct: 370  RVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLD 429

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
            LAGPLL  LFR+LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG
Sbjct: 430  LAGPLLANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWG 489

Query: 462  -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 520
             Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 490  EQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 549

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WV
Sbjct: 550  PEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWV 609

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 636
            G+HRDP  LV T++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 637  ---RLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMIS 682
                L++ K  I  L+  +E P D           GW  LV  G IEY+D EEEET MI 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIV 729

Query: 683  MTINDLVQARLH------PEEAYAD--------------TYTHCEIHPSLILGVCASIIP 722
            MT  DL  ++ +      PEE   D              T+THCEIHPS+ILG+CASIIP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P
Sbjct: 850  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKP 909

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 900
             RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D 
Sbjct: 910  MRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDV 969

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  E
Sbjct: 970  STPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHE 1029

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
            DMP+T EGITPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S 
Sbjct: 1030 DMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSS 1089

Query: 1021 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080
             L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQ
Sbjct: 1090 LLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQ 1149

Query: 1081 PAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKK 1139
            P EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA +KK
Sbjct: 1150 PVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKK 1209

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
              FECR C+NK  I QVHIPYA KLLFQEL +M IA RM TK
Sbjct: 1210 GDFECRACRNKNKISQVHIPYAAKLLFQELASMNIAARMYTK 1251


>gi|315041535|ref|XP_003170144.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
 gi|311345178|gb|EFR04381.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
          Length = 1258

 Score = 1478 bits (3826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 717/1242 (57%), Positives = 908/1242 (73%), Gaps = 82/1242 (6%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            + EE IT ED W VISA+FE KGLV QQLDSFDEFI  TMQE+V+E   + +      + 
Sbjct: 14   ETEEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSD 73

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
             +        Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY++PLY+ ++K+++
Sbjct: 74   DEHDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIM 133

Query: 138  KKGHDGEE-----------------------------------VTETQDFTKVFIGKVPI 162
                +G E                                   + +  +   +FIGK+PI
Sbjct: 134  ----EGRERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPI 189

Query: 163  MLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 222
            ML+S YC L    E+ L    ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+
Sbjct: 190  MLKSKYCILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPS 249

Query: 223  KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRA 282
               YVAE+RS  E  +R  S + +++ S+  +  G  G  IR+TLPYI+T+IPI++VFRA
Sbjct: 250  PTPYVAEIRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRA 309

Query: 283  LGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDK 341
            LG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++ + + ++K
Sbjct: 310  LGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEK 369

Query: 342  RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
            R++YA++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLD
Sbjct: 370  RVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLD 429

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
            LAGPLL  LFR+LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG
Sbjct: 430  LAGPLLANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWG 489

Query: 462  -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 520
             Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 490  EQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 549

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WV
Sbjct: 550  PEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWV 609

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 636
            G+HRDP  LV T++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 637  ---RLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMIS 682
                L++ K  I  L+  +E P D           GW  LV  G IEY+D EEEET MI 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPADLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIV 729

Query: 683  MTINDLVQARLH------PEEAYAD--------------TYTHCEIHPSLILGVCASIIP 722
            MT  DL  ++ +      PEE   D              T+THCEIHPS+ILG+CASIIP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P
Sbjct: 850  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKP 909

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 900
             RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D 
Sbjct: 910  MRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDV 969

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  E
Sbjct: 970  STPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHE 1029

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
            DMP+T EG+TPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S 
Sbjct: 1030 DMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSS 1089

Query: 1021 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080
             L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQ
Sbjct: 1090 LLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQ 1149

Query: 1081 PAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKK 1139
            P EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA +KK
Sbjct: 1150 PVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKK 1209

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
              FECR C+NK  I QVHIPYA KLLFQEL +M IA RM TK
Sbjct: 1210 GDFECRACRNKNKISQVHIPYAAKLLFQELASMNIAARMYTK 1251


>gi|255955085|ref|XP_002568295.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590006|emb|CAP96165.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1255

 Score = 1478 bits (3825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 719/1248 (57%), Positives = 918/1248 (73%), Gaps = 77/1248 (6%)

Query: 7    DYEEQHQQEEEDEEEE-ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            DY+E ++++  DE +E IT ED W VIS++F+ KGLV QQLDSFDEFI +TMQE+V+E  
Sbjct: 3    DYDETYEEDFYDEADEGITSEDCWTVISSFFDSKGLVSQQLDSFDEFISSTMQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETI---YKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
             + +    Q  P  + +    +   Y++ FG + LS+P +TE DG T  + P+ ARLRNL
Sbjct: 63   QVVL---DQTLPPSEDEIEPIVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNL 119

Query: 123  TYSAPLYVDVTKRVIK-----------KGHDGEEVTETQDF-----TK-----------V 155
            TY++PLY+ VTK++++             ++GE   +TQ       TK           V
Sbjct: 120  TYASPLYLGVTKKIMEGREKIGKPTDDDDNEGESDPKTQGTYLEWETKQLPQEQMKEETV 179

Query: 156  FIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYV 215
            FIGK+PIML+S YC L   +E  L    ECPYD GGYF+INGSEKVLIAQE+ + N V V
Sbjct: 180  FIGKMPIMLKSKYCILKDLNESSLYAWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQV 239

Query: 216  FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIP 275
            FKK  P+   Y+AE+RS  E  +R  S++ +++ ++  +  G  G  IR+TLPY++ +IP
Sbjct: 240  FKKAPPSPTPYIAEIRSAVEKGSRMLSSLTLKLFAKGDSAKGGFGPTIRSTLPYVKADIP 299

Query: 276  IIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT- 334
            I++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++ 
Sbjct: 300  IVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQ 359

Query: 335  VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 394
              +  D+R++YA++I+QKE+LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH
Sbjct: 360  SNLNHDRRVRYARDIMQKELLPHISQNEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDH 419

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFR LF ++T+D++ YVQ+CV+  +++ L   IKA T+T GLKY+
Sbjct: 420  FGKKRLDLAGPLLASLFRTLFTRVTKDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYA 479

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA  +AGVSQVL+R T+AS+LSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 480  LATGNWGEQKKAASAKAGVSQVLSRYTFASSLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 539

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNLALM YITVG+ A PI++F+ +   E  EE  P V P ATK+
Sbjct: 540  LVCPAETPEGQACGLVKNLALMCYITVGTPAEPIVDFMIQRNMEVLEEFEPQVTPNATKV 599

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVGIHRDP  LV T++ LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF++
Sbjct: 600  FVNGVWVGIHRDPSHLVTTMQNLRRRNMISHEVSLIRDIREREFKIFTDTGRVCRPLFVI 659

Query: 634  EKQR-------LLIKKRDIIALQQRE------SPEDG-----GWHDLVAKGFIEYIDTEE 675
            +          L++ K  I  L+  +      +PE+      GW  LV  G +EY+D EE
Sbjct: 660  DNDPKSENSGGLVLNKEHIRKLEADKDLPTDMAPEERREQYFGWDGLVRSGAVEYVDAEE 719

Query: 676  EETTMISMTINDLVQAR------LHPEEAYAD--------------TYTHCEIHPSLILG 715
            EET MI MT  DL  +R        P++  +D              T+THCEIHPS+ILG
Sbjct: 720  EETIMIVMTPEDLEISRQLQAGYALPDDETSDPNKRVRSILSQRAHTWTHCEIHPSMILG 779

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            VCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME
Sbjct: 780  VCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFSQRMETMANILYYPQKPLATTRSME 839

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
             L FR+LPAG NAIVAIA YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V
Sbjct: 840  FLRFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYADTEKMVGLQV 899

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR 894
             E F +P R +T+GMR G+YDKLD+DG+  PG RVSGED+IIGKT P++ D E  GQ ++
Sbjct: 900  VERFEKPMRLDTLGMRKGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPLAADAEELGQRTK 959

Query: 895  -YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
             +T+ D S  LR +E G+VDQVL++T  D L+FVKVR+R+ ++PQIGDKF+SRHGQKGT+
Sbjct: 960  AHTKIDVSTPLRSTENGIVDQVLISTGNDDLKFVKVRMRTTKVPQIGDKFASRHGQKGTI 1019

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDV
Sbjct: 1020 GITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDV 1079

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TVD++S+ L + GYQ RGFE M+NGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP
Sbjct: 1080 TVDSVSRLLREHGYQSRGFEVMFNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGP 1139

Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
             QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+ 
Sbjct: 1140 TQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDDCGLMT 1199

Query: 1134 -IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             +A LKK  FECR C NK  I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1200 PVAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARMFT 1247


>gi|327298359|ref|XP_003233873.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
            118892]
 gi|326464051|gb|EGD89504.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
            118892]
          Length = 1258

 Score = 1475 bits (3818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 715/1242 (57%), Positives = 907/1242 (73%), Gaps = 82/1242 (6%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            + EE IT ED W VISA+FE KGLV QQLDSFDEFI  TMQE+V+E   + +      + 
Sbjct: 14   EAEEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSD 73

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
             +        Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY++PLY+ ++K+++
Sbjct: 74   DEPDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIM 133

Query: 138  KKGHDGEE-----------------------------------VTETQDFTKVFIGKVPI 162
                +G E                                   + +  +   +FIGK+PI
Sbjct: 134  ----EGRERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPI 189

Query: 163  MLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 222
            ML+S YC L    E+ L    ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+
Sbjct: 190  MLKSKYCILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPS 249

Query: 223  KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRA 282
               YVAE+RS  E  +R  S + +++ S+  +  G  G  IR+TLPYI+T+IPI++VFRA
Sbjct: 250  PTPYVAEIRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRA 309

Query: 283  LGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDK 341
            LG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++ + + ++K
Sbjct: 310  LGVVSDEDILNHICYDRNDTSMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEK 369

Query: 342  RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
            R++YA++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLD
Sbjct: 370  RVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLD 429

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
            LAGPLL  LFR+LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG
Sbjct: 430  LAGPLLANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWG 489

Query: 462  -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 520
             Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 490  EQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 549

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WV
Sbjct: 550  PEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWV 609

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 636
            G+HRDP  LV T++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 637  ---RLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMIS 682
                L++ K  I  L+  +E P D           GW  LV  G IEY+D EEEET MI 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIV 729

Query: 683  MTINDLVQARLH------PEEAYAD--------------TYTHCEIHPSLILGVCASIIP 722
            MT  DL  ++ +      PEE   D              T+THCEIHPS+ILG+CASIIP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAG N IVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P
Sbjct: 850  PAGQNVIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKP 909

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 900
             RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D 
Sbjct: 910  MRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDV 969

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  E
Sbjct: 970  STPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHE 1029

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
            DMP+T EG+TPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S 
Sbjct: 1030 DMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSS 1089

Query: 1021 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080
             L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQ
Sbjct: 1090 LLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQ 1149

Query: 1081 PAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKK 1139
            P EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA +KK
Sbjct: 1150 PVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMTPIAKVKK 1209

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
              FECR C+N+  I QVHIPYA KLLFQEL +M IA RM TK
Sbjct: 1210 GDFECRACRNRNKISQVHIPYAAKLLFQELASMNIAARMYTK 1251


>gi|259485464|tpe|CBF82508.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
            [Source:UniProtKB/TrEMBL;Acc:Q9UV95] [Aspergillus
            nidulans FGSC A4]
          Length = 1252

 Score = 1474 bits (3815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 724/1245 (58%), Positives = 913/1245 (73%), Gaps = 74/1245 (5%)

Query: 7    DYEEQHQQEE-EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            DY + +++E  +D +E IT ED W VIS++F+ KGLV QQLDSFDEFI +T+QE+V+E  
Sbjct: 3    DYGDAYEEEYYDDMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETI---YKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
             + +    Q  P  + +    +   Y++ FG + LS+PM  E DG    + P  ARLRN+
Sbjct: 63   QVTL---DQTIPPSEDEVDPVVVRRYELKFGTVMLSRPMAMEGDGAATIMLPHEARLRNM 119

Query: 123  TYSAPLYVDVTKRVIK-------------KGHDGEEVTET----------QDFTK---VF 156
            TY++PLY+ + K++++              G++  + T T           D  K   V 
Sbjct: 120  TYASPLYLGIKKKIMEGRERMVGDRDDDDMGNEDRKATGTYLQWEEMALPPDQAKEETVH 179

Query: 157  IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF 216
            IGK+PIML+S YC L    E+ L +  ECPYD GGYFIINGSEKVLIAQE+ + N V VF
Sbjct: 180  IGKMPIMLKSKYCLLRDLGEQALYDWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVF 239

Query: 217  KKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPI 276
            KK  P+   YVAE+RS  E  +R  S + +++  +  +  G  G  IR+TLPYI+ +IPI
Sbjct: 240  KKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSAKGGFGPTIRSTLPYIKADIPI 299

Query: 277  IIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-V 335
            +IVFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++  
Sbjct: 300  VIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQS 359

Query: 336  GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHY 395
             +  ++R++YA+EI+QKE+LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+
Sbjct: 360  SMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHF 419

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFR+LF ++TRD++ YVQ+CV++ +++ L   +KA T+T GL+Y+L
Sbjct: 420  GKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVESDREIYLNVGLKASTVTQGLRYAL 479

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  AA  +AGVSQVL+R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 480  ATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 539

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P ATK+F
Sbjct: 540  VCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVF 599

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG WVG+HR P  LV+T++ LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+V+
Sbjct: 600  VNGVWVGVHRQPSHLVETMQALRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVD 659

Query: 635  KQ-------RLLIKKRDIIALQQRE------SPEDG-----GWHDLVAKGFIEYIDTEEE 676
                      L++ K  I  L++ +       PED      GW  LV  G +EY+D EEE
Sbjct: 660  NDPKSENCGNLVLNKEHIRKLEEDKELPPDMDPEDRRERYFGWDGLVKSGVVEYVDAEEE 719

Query: 677  ETTMISMTINDL-VQARLH-----PEEA------------YADTYTHCEIHPSLILGVCA 718
            ET MI MT  DL +  +L      PEE              A T+THCEIHPS+ILGVCA
Sbjct: 720  ETIMIVMTPEDLEISKQLQAGYALPEEQDPNKRVRSILSQRAHTWTHCEIHPSMILGVCA 779

Query: 719  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 778
            SIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L 
Sbjct: 780  SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLR 839

Query: 779  FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 838
            FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E 
Sbjct: 840  FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYSDSEKMVGLTVVER 899

Query: 839  FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YT 896
            F +P RS+T+GMR G+YDKLD+DG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T
Sbjct: 900  FEKPMRSDTIGMRKGTYDKLDEDGIVNPGVRVSGEDIIIGKTAPLAPDAEELGQRTKNHT 959

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            + D S  LR +E G+VDQVL+TT  D LR VKVR+R  ++PQIGDKF+SRHGQKGT+G+T
Sbjct: 960  KLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMTKVPQIGDKFASRHGQKGTIGIT 1019

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y QEDMP+T EG+TPD+I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD
Sbjct: 1020 YRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVD 1079

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
            +IS+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QI
Sbjct: 1080 SISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQI 1139

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IA 1135
            LTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA
Sbjct: 1140 LTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIA 1199

Query: 1136 NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             LKK  FECR C NK  I QVHIPYA KLLFQEL AM I+ RM T
Sbjct: 1200 KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNISARMFT 1244


>gi|425773185|gb|EKV11554.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425778788|gb|EKV16893.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1255

 Score = 1471 bits (3809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/1248 (57%), Positives = 917/1248 (73%), Gaps = 77/1248 (6%)

Query: 7    DYEEQHQQEEEDEEEE-ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            DY+E ++++  DE +E IT ED W VI+++F+ KGLV QQLDSFDEFI +TMQE+V+E  
Sbjct: 3    DYDETYEEDFYDEADEGITSEDCWTVITSFFDSKGLVSQQLDSFDEFISSTMQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETI---YKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
             + +    Q  P  + +    +   Y++ FG + LS+P +TE DG T  + P+ ARLRNL
Sbjct: 63   QVVL---DQTLPPSEDEIEPIVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNL 119

Query: 123  TYSAPLYVDVTKRVIK-----------KGHDGEEVTETQDF-----TK-----------V 155
            TY++PLY+ VTK++++             +DGE   +TQ       TK           V
Sbjct: 120  TYASPLYLGVTKKIMEGRERMGKPNDDDDNDGETDPKTQGTYLEWETKQLPQEQMKEETV 179

Query: 156  FIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYV 215
            FIGK+PIML+S YC L   ++  L    ECPYD GGYF+INGSEKVLIAQE+ + N V V
Sbjct: 180  FIGKMPIMLKSKYCILKDLNDASLYAWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQV 239

Query: 216  FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIP 275
            FKK  P+   Y+AE+RS  E  +R  S++ +++ ++  +  G  G  IR+TLPY++ +IP
Sbjct: 240  FKKAPPSPTPYIAEIRSAVEKGSRMLSSLTLKLFAKGDSAKGGFGPTIRSTLPYVKADIP 299

Query: 276  IIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT- 334
            I++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++ 
Sbjct: 300  IVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQ 359

Query: 335  VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 394
              +  D+R++YA++I+QKE+LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH
Sbjct: 360  SNLNHDRRVRYARDIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDH 419

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFR LF ++T+D++ YVQ+CV+  +++ L   IKA T+T GLKY+
Sbjct: 420  FGKKRLDLAGPLLASLFRTLFTRVTKDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYA 479

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA  +AGVSQVL+R T++S+LSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 480  LATGNWGEQKKAASAKAGVSQVLSRYTFSSSLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 539

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNLALM YITVG+ A PI++F+ +   E  EE  P V P ATK+
Sbjct: 540  LVCPAETPEGQACGLVKNLALMCYITVGTPAEPIVDFMIQRNMEVLEEFEPQVTPNATKV 599

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVGIHRDP  LV T++ LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF++
Sbjct: 600  FVNGVWVGIHRDPSHLVTTMQNLRRRNMISHEVSLIRDIREREFKIFTDTGRVCRPLFVI 659

Query: 634  EKQR-------LLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEE 675
            +          L++ K  I  L+  ++ P D           GW  LV  G +EY+D EE
Sbjct: 660  DNDPKSENSGGLVLNKEHIRKLEADKDLPPDLGPEERREQYFGWDGLVRSGAVEYVDAEE 719

Query: 676  EETTMISMTINDLVQAR------LHPEEAYAD--------------TYTHCEIHPSLILG 715
            EET MI MT  DL  +R        PE+  +D              T+THCEIHPS+ILG
Sbjct: 720  EETIMIVMTPEDLEISRQLQAGYALPEDETSDPNKRVRSILSQRAHTWTHCEIHPSMILG 779

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            VCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME
Sbjct: 780  VCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFSQRMETMANILYYPQKPLATTRSME 839

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
             L FR+LPAG NAIVAIA YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V
Sbjct: 840  FLRFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYADTEKMVGLQV 899

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR 894
             E F +P R +T+GMR G+YDKLD+DG+  PG RVSGED+IIGKT P++ D E  GQ ++
Sbjct: 900  VERFEKPMRIDTLGMRKGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPLAADAEELGQRTK 959

Query: 895  -YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
             +T+ D S  LR +E G+VDQVL++T  D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+
Sbjct: 960  AHTKIDVSTPLRSTENGIVDQVLVSTGNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTI 1019

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDV
Sbjct: 1020 GITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDV 1079

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TVD++S+ L + GYQ RGFE M+NGHTGR++ A +FLGPTYYQRL+HMVDDKIH+R RGP
Sbjct: 1080 TVDSVSRLLREHGYQSRGFEVMFNGHTGRKMVAQVFLGPTYYQRLRHMVDDKIHARARGP 1139

Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
             QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+ 
Sbjct: 1140 TQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMT 1199

Query: 1134 -IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             +A LKK  FECR C NK  I QVHIPYA KLLFQEL +M IA RM T
Sbjct: 1200 PVAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARMFT 1247


>gi|68300857|gb|AAY89365.1| RNA polymerase IV second largest subunit precursor [Chlamydomonas
            reinhardtii]
          Length = 1607

 Score = 1470 bits (3806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 702/1089 (64%), Positives = 855/1089 (78%), Gaps = 9/1089 (0%)

Query: 16   EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
            +E+E+ EI QED+W VI+A+F++KGLVRQQLDSF+EF+  T+QEI+DE+ +I I+PESQH
Sbjct: 5    QEEEDTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQH 64

Query: 76   NPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 135
             PG ++   E  Y I FGQ+YLS+P +TE DGE+  LFPK ARLRNLTY APLYVDVTK 
Sbjct: 65   LPGVEAA-EEKEYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVTKT 123

Query: 136  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS-EKDLTELGECPYDQGGYFI 194
               +  + E V E  D + V +GKVPIML+S  C L++ S E++ T LGECPYDQGGYF+
Sbjct: 124  EYTRVGENE-VEEKTDLSHVHLGKVPIMLKSERCNLHEASTEQEATNLGECPYDQGGYFV 182

Query: 195  INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA 254
            INGSEKVLIAQE+M+ NHVYVFKK QP+KY + AE+RS+ E   R  S+M + ML++   
Sbjct: 183  INGSEKVLIAQERMANNHVYVFKKSQPSKYTFCAEIRSVVEGSTRSASSMSIMMLAKGKK 242

Query: 255  KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-DTQMMELLRPSLE 313
                +   IRA +PYIR E PI I+FRALGFV+D+DILEHI YD   D  M+E LR S+E
Sbjct: 243  A--GAAGVIRAQIPYIRAEFPIFILFRALGFVSDRDILEHIVYDLDADPAMLEALRSSVE 300

Query: 314  EAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 373
            EA  +Q Q+ AL+Y+GKRG   G ++  RI+YA+ +L KE+LPH+GT +F ET+K Y+ G
Sbjct: 301  EAQEVQTQEEALNYLGKRGTVTGASKADRIQYARNLLIKELLPHLGTEEFMETRKGYFVG 360

Query: 374  YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG 433
            Y++HRL+L ALGRR EDDRDHY NKRLDL GPL+ GLFR+LFRKL +++R   Q+ VD G
Sbjct: 361  YMVHRLMLVALGRRPEDDRDHYANKRLDLGGPLMAGLFRLLFRKLCKELRMQAQRMVDAG 420

Query: 434  KDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
            K++N+  AI  K IT GLKYSLATGNWG+    G RAGVSQVL RLTYASTLSHLRR+NS
Sbjct: 421  KEINVISAINDKVITRGLKYSLATGNWGEQGKQGIRAGVSQVLARLTYASTLSHLRRVNS 480

Query: 494  PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 553
            PIGREGKLAKPRQLHNS WG+ CPAETPEGQA GLVKN+ALM YITVG+ + P++  LEE
Sbjct: 481  PIGREGKLAKPRQLHNSLWGIFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHLEE 540

Query: 554  WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIR 613
            + TE  +E++PA I  +TK+F+NG W+GI RDP  L+K LR +RR+V  +TEV ++ D  
Sbjct: 541  FNTEALDEVTPADIAASTKVFINGVWLGIQRDPTALIKNLRAMRRQVAFSTEVAIIYDGP 600

Query: 614  LKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEYID 672
            LKELRI+TDYGR SRPL+I E  RLL+ K  I  L      ED   W  LV  G +EYID
Sbjct: 601  LKELRIFTDYGRASRPLYICEDNRLLVSKHHIRRLISPLPDEDEYAWPQLVQDGLVEYID 660

Query: 673  TEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
             EEEETTMI+MTI DL  AR     A   TYTHCEIHP++ILGVCASIIPFPDHNQSPRN
Sbjct: 661  AEEEETTMIAMTIADLRNAR-EAGAATGTTYTHCEIHPAMILGVCASIIPFPDHNQSPRN 719

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMG+Y TNYQ RMDT  +VLYYPQKPLV TRAM++L FR+LPAGINAIVAI
Sbjct: 720  TYQSAMGKQAMGMYATNYQTRMDTQGFVLYYPQKPLVCTRAMDYLMFRELPAGINAIVAI 779

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
             CYSGYNQEDS+++N SSIDRGF RS+ +R+Y++EEKK G++ +E+   PD S T  M+H
Sbjct: 780  MCYSGYNQEDSLMLNGSSIDRGFHRSILYRAYKEEEKKAGSMAREEIEAPDPSVTSKMKH 839

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMV 912
            G+YDKLD DGL PPGTRVSGED+I GKT  +  D+  G   R+T++D S++LR  E G++
Sbjct: 840  GTYDKLDADGLCPPGTRVSGEDIICGKTVTLP-DDPTGAVQRFTKKDASLALRGHEAGVI 898

Query: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            DQV+LTTN +G +FVK+RVR++ IPQ+GDKF+SRHGQKGT G+TYT EDMP+T EGI PD
Sbjct: 899  DQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTMEDMPFTAEGIVPD 958

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032
            IIVNPHAIPSRMTIG L+E +M KVA+ MG EGDATPFT VTVDN+S+ LH  GYQ RG+
Sbjct: 959  IIVNPHAIPSRMTIGHLVEALMSKVASLMGSEGDATPFTKVTVDNVSQMLHDLGYQRRGW 1018

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MY+GHTGR+L A IFL PTYYQRLKHMVD KIHSRGRGPVQ+LTRQPAEGR+RDGGLR
Sbjct: 1019 EVMYSGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVLTRQPAEGRARDGGLR 1078

Query: 1093 FGEMERDCM 1101
            FGEMERDC+
Sbjct: 1079 FGEMERDCL 1087



 Score =  127 bits (319), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 69/85 (81%)

Query: 1099 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 1158
            +C+I+HGA+ FLKERLFDQSDAYR+HVCE  GLIA+ANLKK  F     K+ ++I QV+I
Sbjct: 1516 NCIISHGAAAFLKERLFDQSDAYRIHVCERSGLIAVANLKKQQFTSTIYKDGSNIYQVYI 1575

Query: 1159 PYACKLLFQELMAMAIAPRMLTKED 1183
            PYACKLLFQELMAM IAPRM  + D
Sbjct: 1576 PYACKLLFQELMAMCIAPRMQFERD 1600


>gi|322711689|gb|EFZ03262.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium anisopliae
            ARSEF 23]
          Length = 1262

 Score = 1469 bits (3803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 724/1258 (57%), Positives = 906/1258 (72%), Gaps = 88/1258 (6%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            E+DYDY       + D++E IT ED W VIS++F+ KGLV QQ DSFDEF Q T+Q++V+
Sbjct: 5    EEDYDY----LTYDGDDDEGITPEDCWTVISSFFDTKGLVSQQTDSFDEFTQTTIQDLVN 60

Query: 63   ESADIEIRPESQHNPGQQS--DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            E + I +    Q NP   +    A   Y+I FG + +S+P ++E+DG   +L P   R R
Sbjct: 61   EYSTITL---DQPNPPSAAGEKVALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDR 117

Query: 121  NLTYSAPLYVDVTKRV---------IKKGHDG-------------------EEVTETQDF 152
            NLTY++PLY+++TK+V         +K+  D                    EE  E  D 
Sbjct: 118  NLTYASPLYINITKKVSRAVEQDIPLKELDDAQREELKRTGEMPTKLVWELEESAEDDDT 177

Query: 153  TK-------VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ 205
             K       VF+GK+PIM++S  C L +  E  L  + ECPYDQGGYF+INGSEKVLIAQ
Sbjct: 178  GKSEDWKNMVFVGKLPIMVKSKICHLSREQEDSLFMVNECPYDQGGYFVINGSEKVLIAQ 237

Query: 206  EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 265
            E+ + N V VFKK QP+ Y Y AE+RS  E  +R  S++ +++  +  +  G  GQ I  
Sbjct: 238  ERSAANIVQVFKKAQPSPYTYTAEIRSALEKGSRLISSLSLKLYGKGDSARGGFGQTIHT 297

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
            TLP++++++PI IVFRALG V+D+DIL HICYD +D+QM+E+LRP +EEAF +Q+++VAL
Sbjct: 298  TLPFVKSDLPIAIVFRALGVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVAL 357

Query: 326  DYIGKRGA--TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 383
            D+IGKRG     G+ RDKR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL CA
Sbjct: 358  DFIGKRGNRDQAGLGRDKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCA 417

Query: 384  LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIK 443
            LGRR  DDRDH+G KRLDLAGPLL  LFR + R++  ++  Y+++CV+  +  NL   IK
Sbjct: 418  LGRREPDDRDHFGKKRLDLAGPLLAKLFRGIIRRMNTELSNYLRRCVEGNRHFNLAVGIK 477

Query: 444  AKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
              T+++GLKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLA
Sbjct: 478  PGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLA 537

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS A P++EF+   G E  EE 
Sbjct: 538  KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIEFMINRGMEVVEEY 597

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
             P   P ATKIFVNG WVG+H+DP+ LV  +   RR+  +  EV +VR+IR +E +I++D
Sbjct: 598  EPLRYPHATKIFVNGVWVGVHQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSD 657

Query: 623  YGRCSRPLFIV----------EKQRLLIKKRDI--IALQQRESPEDG----GWHDLVAKG 666
             GR  RP+F V          EK  L++ K  +  +A +Q E PED     GW  L+  G
Sbjct: 658  AGRVMRPVFTVQQEDDPETGIEKGHLVLTKELVNKLAKEQAEPPEDPSEKIGWEGLIRAG 717

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD--------------------TYTHC 706
             +EY+D EEEET+MI MT  DL   RL       D                     YTHC
Sbjct: 718  AVEYLDAEEEETSMICMTPEDLELYRLQKAGVALDDDIGDDLNKRLKTKTNPTTHMYTHC 777

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            EIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQK
Sbjct: 778  EIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQK 837

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
            PL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D
Sbjct: 838  PLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSD 897

Query: 827  EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 886
            +EKK+G    E F +P   +T+ M+HG+YDKLDDDG+  PG RVSGED+IIGKT PI Q 
Sbjct: 898  QEKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIDQ- 956

Query: 887  EAQGQASR---YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
            E+Q   +R   + RRD S  LR +E G+VD V+LT NAD +++VKVRVR+ +IPQIGDKF
Sbjct: 957  ESQDLGTRTSVHQRRDISTPLRSTENGIVDSVILTVNADNVKYVKVRVRTTKIPQIGDKF 1016

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            +SRHGQKGT+G+TY QEDMP+T EG+TPDII+NPHAIPSRMTI  LIEC++ KV+   G 
Sbjct: 1017 ASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGM 1076

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            EGDATPFTDVTVD++S+ L K GYQ RGFE MYNGHTG++L A +F GPTYYQRL+HMVD
Sbjct: 1077 EGDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVD 1136

Query: 1064 DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 1123
            DKIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RV
Sbjct: 1137 DKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRV 1196

Query: 1124 HVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            H+CE CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1197 HICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1254


>gi|358054058|dbj|GAA99857.1| hypothetical protein E5Q_06560 [Mixia osmundae IAM 14324]
          Length = 1327

 Score = 1469 bits (3802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 712/1203 (59%), Positives = 895/1203 (74%), Gaps = 57/1203 (4%)

Query: 26   EDAWAVISAYFEE------KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
            +D W +   YF        K LV QQ+DSF++F+ N+MQEIVDE++ + +  E Q     
Sbjct: 86   DDPWTMTDNYFSSGPKKQIKSLVSQQIDSFNDFLNNSMQEIVDENSKLVLDQELQFQ--- 142

Query: 80   QSDFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
                AE +  Y+I+FGQ+YLS+P  TE+DG  A LFP+ ARLRNLTYS+PLYVDV+  V 
Sbjct: 143  --GTAEKLRRYEINFGQVYLSQPTQTEADGSVAALFPQEARLRNLTYSSPLYVDVSMTVK 200

Query: 138  KKGHDGE--EVTETQDFT-------------KVFIGKVPIMLRSSYCTLYQNSEKDLTEL 182
                DGE  E  E +  T             + ++GKVP+M++S +C L +  E  L   
Sbjct: 201  VPHPDGELDENGEIEWITEEDEAGMQQISQHREYLGKVPMMIKSRFCHLLKMEEDALFNA 260

Query: 183  GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS 242
             ECP D+GGYFIINGSEKVLIAQE+M+ N VYVF K  P+  AY+AE+RS+ ES ++ PS
Sbjct: 261  DECPLDKGGYFIINGSEKVLIAQERMAGNTVYVFGKAPPSPIAYLAEIRSVVESGSQTPS 320

Query: 243  TMFVRMLSRTSAK--GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ 300
            ++ V+M+   +    GG++G  IR TLPYIR +IPI++VFRALG + DKDIL+HICYD  
Sbjct: 321  SLTVKMMRAGNPDKVGGATGSVIRVTLPYIRADIPILVVFRALGIIPDKDILQHICYDPN 380

Query: 301  DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGT 360
            DT M ELL+PSLEEAF +Q+Q VALD+IG+RG   G+TRDKRI+YA+++LQKE+LPHV T
Sbjct: 381  DTDMYELLKPSLEEAFPVQDQNVALDFIGRRGTAAGLTRDKRIQYARDVLQKEVLPHVST 440

Query: 361  GDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
                  KKAY+FGY+IHRLL+ A+ RR  DDRDH+G KRLDLAGPL+  LFR LF+K+ +
Sbjct: 441  SAGSHQKKAYFFGYMIHRLLMAAMQRRDLDDRDHFGKKRLDLAGPLVASLFRTLFKKMIK 500

Query: 421  DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRL 479
            DV  Y+QKCVD  K+  +  AI+A TIT+GLKYSLATGNWG Q  AA  RAGVSQVLNR 
Sbjct: 501  DVYRYLQKCVDTQKEFKMNNAIRASTITNGLKYSLATGNWGEQKKAAAARAGVSQVLNRY 560

Query: 480  TYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 539
            T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM YIT
Sbjct: 561  TFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYIT 620

Query: 540  VGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRR 599
            VG+A  PI++FL++WG+ + EE++   + +  K+FVNG W G+H +P++L+K L RLRR 
Sbjct: 621  VGTAIRPIIDFLQDWGSVSLEEVTD--LRKGAKVFVNGFWQGVHPNPDVLMKVLLRLRRT 678

Query: 600  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED--G 657
              +N  V +VRDIR +E+RI+ D GR  RPL IV+ Q+L ++ R  + L  R+   D   
Sbjct: 679  GTLNKSVSIVRDIREREIRIFADPGRVCRPLLIVQDQQLRLR-RCHLDLLMRDPASDYAA 737

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA-------------------RLHPEEA 698
            G+ D+   G +E++D EEEE  MI MT  DL  A                   R     +
Sbjct: 738  GFDDMTNWGIVEFLDAEEEEMAMICMTYEDLEAAYYAHDKDHAKQGVDPTARLRSAITAS 797

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
             A  +THCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ R+DT+A
Sbjct: 798  QAQRWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRLDTMA 857

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
             +L+YPQKPL TTR+M++LHFRQLPAG NAIVAI CYSGYNQEDSVIMNQS+IDRG FRS
Sbjct: 858  NILFYPQKPLATTRSMDYLHFRQLPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRS 917

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
             ++R+Y D EK+ G L  E F +P R +T+ ++ G+YDKL DDG    G +V G D+IIG
Sbjct: 918  FYYRTYMDTEKRQGALQMESFEKPSRLDTLRLKRGTYDKLGDDGFVRVGEQVRGGDIIIG 977

Query: 879  KTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 936
            KT PI+ D E  GQ ++ + +RD S  L+ +E G +D+V++TTNADGL+F KVRVRS RI
Sbjct: 978  KTAPIAPDSEELGQRTKDHVKRDVSTPLKSTEEGYIDRVMITTNADGLKFAKVRVRSTRI 1037

Query: 937  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 996
            PQ GDKF+SRHGQKGT+G+TY Q DMP+T EGI PD+I+NPHAIPSRMTIG L+EC++ K
Sbjct: 1038 PQTGDKFASRHGQKGTIGITYQQNDMPFTSEGIVPDLIINPHAIPSRMTIGHLVECLLSK 1097

Query: 997  VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            V+A  G+EGDATPF+DVTVD++S  L   G+Q RG E M NGHTGR+L A ++LGPTYYQ
Sbjct: 1098 VSALTGQEGDATPFSDVTVDSVSSVLKAQGFQDRGLEIMSNGHTGRKLAAQVYLGPTYYQ 1157

Query: 1057 RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFD 1116
            RLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFGEMERDCMIAHG + FLKER+F+
Sbjct: 1158 RLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIAHGVAGFLKERMFE 1217

Query: 1117 QSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAP 1176
             SDA+R+HVC+ CG+ AIANL K +FECR CKNKT I QV +PY+ KLLF EL AM IA 
Sbjct: 1218 ASDAFRIHVCDICGMTAIANLMKQTFECRACKNKTAISQVLVPYSAKLLFSELQAMNIAT 1277

Query: 1177 RML 1179
            R++
Sbjct: 1278 RIV 1280


>gi|322699819|gb|EFY91578.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium acridum
            CQMa 102]
          Length = 1263

 Score = 1467 bits (3799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 723/1258 (57%), Positives = 906/1258 (72%), Gaps = 87/1258 (6%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            ++DYDY      + +D++E IT ED W VIS++F+ KGLV QQ DSFDEF Q T+Q++V+
Sbjct: 5    DEDYDYTPY---DGDDDDEGITPEDCWTVISSFFDTKGLVSQQTDSFDEFTQTTIQDLVN 61

Query: 63   ESADIEIRPESQHNPGQQS--DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            E + I +    Q NP   +    A   Y+I FG + +S+P ++E+DG   +L P   R R
Sbjct: 62   EYSTITL---DQPNPPSAAGEKVALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDR 118

Query: 121  NLTYSAPLYVDVTKRV---------IKKGHDG-------------------EEVTETQDF 152
            NLTY++PLY+++TK+V         +K+  D                    EE  E  D 
Sbjct: 119  NLTYASPLYINITKKVSRAVEQDIPLKELDDAQREELKRTGEMPTKLVWEVEESAEDDDT 178

Query: 153  TK-------VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ 205
             K       VF+GK+PIM++S  C L +  E  L  + ECPYDQGGYF+INGSEKVLIAQ
Sbjct: 179  GKSEDWKNMVFVGKLPIMVKSKICHLSREQEDSLFMVNECPYDQGGYFVINGSEKVLIAQ 238

Query: 206  EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 265
            E+ + N V VFKK QP+ Y Y AE+RS  E  +R  S++ +++  +  +  G  GQ I  
Sbjct: 239  ERSAANIVQVFKKAQPSPYTYTAEIRSALEKGSRLISSLTLKLYGKGDSARGGFGQTIHT 298

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
            TLP++++++PI IVFRALG V+D+DIL HICYD +D+QM+E+LRP +EEAF +Q+++VAL
Sbjct: 299  TLPFVKSDLPIAIVFRALGVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVAL 358

Query: 326  DYIGKRGA--TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 383
            D+IGKRG     G+ RDKR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL CA
Sbjct: 359  DFIGKRGNRDQAGLGRDKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCA 418

Query: 384  LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIK 443
            LGRR  DDRDH+G KRLDLAGPLL  LFR + R++  ++  Y+++CV+  +  NL   IK
Sbjct: 419  LGRREPDDRDHFGKKRLDLAGPLLAKLFRGIIRRMNTELSNYLRRCVEGNRHFNLAVGIK 478

Query: 444  AKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
              T+++GLKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLA
Sbjct: 479  PGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLA 538

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS A P++EF+   G E  EE 
Sbjct: 539  KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIEFMINRGMEVVEEY 598

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
             P   P ATKIFVNG WVG+H+DP+ LV  +   RR+  +  EV +VR+IR +E +I++D
Sbjct: 599  EPLRYPHATKIFVNGVWVGVHQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSD 658

Query: 623  YGRCSRPLFIV----------EKQRLLIKKRDI--IALQQRESPEDG----GWHDLVAKG 666
             GR  RP+F V          EK  L++ K  +  +A +Q E PED     GW  L+  G
Sbjct: 659  AGRVMRPVFTVQQEDDPETGIEKGHLVLTKDLVNKLAKEQAEPPEDPSEKIGWEGLIRAG 718

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD--------------------TYTHC 706
             +EY+D EEEET MI MT  DL   RL       D                     YTHC
Sbjct: 719  AVEYLDAEEEETAMICMTPEDLELYRLQKAGVALDDDIGDDLNKRLKTKTNPTTHMYTHC 778

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            EIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQK
Sbjct: 779  EIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQK 838

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
            PL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D
Sbjct: 839  PLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSD 898

Query: 827  EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 886
            +EKK+G    E F +P   +T+ M+HG+YDKLDDDG+  PG RVSGED+IIGKT PI Q 
Sbjct: 899  QEKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIDQ- 957

Query: 887  EAQGQASR---YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
            E+Q   +R   + RRD S  LR +E G+VD V+LT NAD +++VKVRVR+ +IPQIGDKF
Sbjct: 958  ESQDLGTRTSVHQRRDISTPLRSTENGIVDSVILTVNADNVKYVKVRVRTTKIPQIGDKF 1017

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            +SRHGQKGT+G+TY QEDMP+T EG+TPDII+NPHAIPSRMTI  LIEC++ KV+   G 
Sbjct: 1018 ASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGM 1077

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            EGDATPFTDVTVD++S+ L K GYQ RGFE MYNGHTG++L A +F GPTYYQRL+HMVD
Sbjct: 1078 EGDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVD 1137

Query: 1064 DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 1123
            DKIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RV
Sbjct: 1138 DKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRV 1197

Query: 1124 HVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            H+CE CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1198 HICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1255


>gi|340517145|gb|EGR47390.1| beta subunit of DNA-directed RNA polymerase [Trichoderma reesei QM6a]
          Length = 1262

 Score = 1467 bits (3798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 721/1258 (57%), Positives = 907/1258 (72%), Gaps = 88/1258 (6%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            EDDYDYE        DE+E IT ED W VIS++FE KGLV QQ DSFDEF Q T+Q++V+
Sbjct: 5    EDDYDYENYG-----DEDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVN 59

Query: 63   ESADIEI-RPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            E + I + +P     PG+    A   Y+I FG + +S+P ++E+DG   +L P   R RN
Sbjct: 60   EYSTITLDQPNPPSPPGRT--IALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRN 117

Query: 122  LTYSAPLYVDVTKRV-----------------------------------IKKGHDGEEV 146
            LTY++PLY+ +TK++                                    + G D   +
Sbjct: 118  LTYASPLYIKITKKLSAAVEKEIPLHEMDDAQQEEYARTGEAPTKLEWEEEEAGEDDHNI 177

Query: 147  TETQDFTK-VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ 205
             +++D+   VF+GK+PIM++S  C L + ++  L  + ECPYDQGGYF+INGSEKVLIAQ
Sbjct: 178  GKSEDWKDMVFVGKLPIMVKSKICHLSRETDDSLFLVNECPYDQGGYFVINGSEKVLIAQ 237

Query: 206  EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 265
            E+ + N V VFKK QP+ Y Y AE+RS  E  +R  S+M +++  +  +  G  GQ I  
Sbjct: 238  ERSAANIVQVFKKAQPSAYTYTAEIRSALEKGSRLISSMMLKLYGKGDSARGGFGQTIHT 297

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
            TLP++++++P+ IVFRALG V+D+DIL HICYD  D+QM+E+LRP +EEAF +Q+++VAL
Sbjct: 298  TLPFVKSDLPVAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVAL 357

Query: 326  DYIGKRGA--TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 383
            D+IGKRG     G+ R+KR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL CA
Sbjct: 358  DFIGKRGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCA 417

Query: 384  LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIK 443
            LGRR  DDRDH+G KRLDLAGPLL  LFR + R++  ++  Y+++CV+  +  NL   IK
Sbjct: 418  LGRREPDDRDHFGKKRLDLAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIK 477

Query: 444  AKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
              T+++GLKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLA
Sbjct: 478  PGTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLA 537

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS + P++EF+   G E  EE 
Sbjct: 538  KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEY 597

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
             P   P ATKIFVNG WVGIH+DP+ LV+ +   RR+  +  EV +VR+IR +E +I++D
Sbjct: 598  EPLRYPHATKIFVNGVWVGIHQDPKHLVQQVVDTRRKSYLQYEVSLVREIRDQEFKIFSD 657

Query: 623  YGRCSRPLFIVEKQR---------LLIKKRDII---ALQQRESPEDG----GWHDLVAKG 666
             GR  RP+F V++            L+  +D++   A +Q E PED     GW  L+  G
Sbjct: 658  AGRVMRPVFTVQQDEESDTGIPKGHLVLTKDLVNKLAQEQAEPPEDPSMKIGWEGLIRAG 717

Query: 667  FIEYIDTEEEETTMISMTINDL-----VQARLHPEEAYAD---------------TYTHC 706
             +EY+D EEEET MI MT  DL      +A +  EE   D                YTHC
Sbjct: 718  AVEYLDAEEEETAMICMTPEDLELYRAQKAGIATEEDVGDDPNKRLKTRTNPTTHMYTHC 777

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            EIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQK
Sbjct: 778  EIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQK 837

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
            PL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D
Sbjct: 838  PLGTTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSD 897

Query: 827  EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 886
            +EKK+G    E F +P   NT+ M+HG+YDKLD+DG+  PG RVSGED+IIGKT PI  D
Sbjct: 898  QEKKVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDAD 957

Query: 887  EAQGQASRYT---RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
              Q   +R T   RRD S  LR +E G+VD V++T NAD +++VKVRVR+ +IPQIGDKF
Sbjct: 958  -TQDLGTRTTMHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKF 1016

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            +SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV+   G 
Sbjct: 1017 ASRHGQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGM 1076

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            EGDATPFTDVTVD++S+ L K GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVD
Sbjct: 1077 EGDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVD 1136

Query: 1064 DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 1123
            DKIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RV
Sbjct: 1137 DKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRV 1196

Query: 1124 HVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            H+CE CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1197 HICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1254


>gi|408400353|gb|EKJ79435.1| hypothetical protein FPSE_00366 [Fusarium pseudograminearum CS3096]
          Length = 1269

 Score = 1467 bits (3797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 724/1272 (56%), Positives = 913/1272 (71%), Gaps = 110/1272 (8%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            E+D DY+  +       +E IT ED W VIS++FE KGL  QQ DSFDEF Q T+Q++V+
Sbjct: 6    ENDSDYDYGY-------DEGITPEDCWTVISSFFETKGLASQQTDSFDEFTQRTVQDLVN 58

Query: 63   ESADIEIRPESQHNPGQQSDFAETI----YKISFGQIYLSKPMMTESDGETATLFPKAAR 118
            E ADI +    Q NP   S +   I    Y+I FG + +S+P ++E+DG  A+L P   R
Sbjct: 59   EYADISL---DQQNP--PSSYGVPIALRRYEIKFGSVMVSRPSISETDGTVASLLPYECR 113

Query: 119  LRNLTYSAPLYVDVTKRVI---------------------------KKGH-----DGEEV 146
             RNLTYS+P Y+ +TK+V                             K H     DG+ +
Sbjct: 114  DRNLTYSSPAYIKITKKVSVAIDKEIPLHEMDEEQQAEYKRTGEHPTKLHWEVEEDGDSM 173

Query: 147  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206
             E Q    +F+GK+PIM++S  C L Q+++++L  L ECPYDQGGYF+INGSEKVLIAQE
Sbjct: 174  KEGQP-NMIFVGKMPIMVKSKICHLSQHTDEELFTLNECPYDQGGYFVINGSEKVLIAQE 232

Query: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266
            + + N V VFKK QP+ + Y AE+RS  E  +R  S++ +++L +  +  G  GQ I+ +
Sbjct: 233  RSAANIVQVFKKAQPSPFTYTAEIRSALEKGSRLISSLMMKILGKGDSARGGFGQTIQTS 292

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            LP++++++P+ IVFRALG V+D+DIL HICYD  D+QM+E+LRP +EEAF +Q+++VALD
Sbjct: 293  LPFVKSDLPVAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALD 352

Query: 327  YIGKRG----ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
            +IGKRG    A++G  R+KR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL C
Sbjct: 353  FIGKRGNRDQASLG--REKRVRVAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQC 410

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
            ALGRR  DDRDH+G KRLDLAGPLL  LFR + R++ +++  Y+++CV++ ++ NL  AI
Sbjct: 411  ALGRREPDDRDHFGKKRLDLAGPLLAKLFRGIIRRMNQELSNYLKRCVESNRNFNLNVAI 470

Query: 443  KAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501
            K  T+++GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKL
Sbjct: 471  KPGTLSNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKL 530

Query: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561
            AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS   P+++F+   G E  EE
Sbjct: 531  AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPGEPLIDFMVSRGMEVVEE 590

Query: 562  ISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 621
              P   P ATK+FVNG WVG+H +P  LV ++   RR+  +  EV +VRDIR +E +I++
Sbjct: 591  YEPTRYPHATKVFVNGSWVGVHPEPRALVNSVLETRRKSYLQFEVSLVRDIRDREFKIFS 650

Query: 622  DYGRCSRPLFIVEKQR---------LLIKKRDI---IALQQRESPEDG----GWHDLVAK 665
            D GR  RP+F V+++           L+  +D+   IA +Q E P D     GW  L+  
Sbjct: 651  DAGRVMRPVFTVQQEDDYETGLTKGQLVLTKDLVNKIAQEQAEPPSDPSERIGWQGLIRS 710

Query: 666  GFIEYIDTEEEETTMISMTINDLV--------QARLHPEEAYAD---------------- 701
            G +EYID EEEET MI MT  DL         +  L  EE  A                 
Sbjct: 711  GAVEYIDAEEEETAMICMTPEDLEIYREQKRDEVNLTEEEKQAKLEAEKREQEEERNKRL 770

Query: 702  ---------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 752
                      YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  
Sbjct: 771  KTKVNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSR 830

Query: 753  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 812
            RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSID
Sbjct: 831  RMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSID 890

Query: 813  RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 872
            RG FRSLFFRSY D+EKK+G    E F +P +  T+ M+HG+YDKLD+DG+  PG RVSG
Sbjct: 891  RGLFRSLFFRSYSDQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSG 950

Query: 873  EDVIIGKTTPISQDEAQGQASR---YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 929
            ED+IIGKT PI Q E Q   +R   + RRD S  LR +E G+VDQV+LT NAD +++VKV
Sbjct: 951  EDIIIGKTAPIDQ-ENQDLGTRTQTHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKV 1009

Query: 930  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 989
            RVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP++ EG+TPDII+NPHAIPSRMTI  L
Sbjct: 1010 RVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHL 1069

Query: 990  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 1049
            IEC++ KV+   G EGDATPFTDVTVD++S  L K GYQ RGFE MYNGHTGR+L A +F
Sbjct: 1070 IECLLSKVSTLEGMEGDATPFTDVTVDSVSDILRKHGYQSRGFEVMYNGHTGRKLRAQVF 1129

Query: 1050 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 1109
             GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ F
Sbjct: 1130 FGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAF 1189

Query: 1110 LKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1168
            LKERLF+ SDA+RVHVCE CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQE
Sbjct: 1190 LKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQE 1249

Query: 1169 LMAMAIAPRMLT 1180
            L AM IA RM T
Sbjct: 1250 LQAMNIAARMFT 1261


>gi|358395023|gb|EHK44416.1| hypothetical protein TRIATDRAFT_151043 [Trichoderma atroviride IMI
            206040]
          Length = 1261

 Score = 1466 bits (3795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 721/1257 (57%), Positives = 904/1257 (71%), Gaps = 87/1257 (6%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            EDDYDYE        DE+E IT ED W VIS++FE KGLV QQ DSFDEF Q T+Q++V+
Sbjct: 5    EDDYDYENYG-----DEDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVN 59

Query: 63   ESADIEI-RPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            E + I + +P     PG+    A   Y+I FG + +S+P ++E+DG   +L P   R RN
Sbjct: 60   EYSTITLDQPNPPSPPGRT--IALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRN 117

Query: 122  LTYSAPLYVDVTKRVI------------------KKGHDGEEVT---------------- 147
            LTY++PLY+ +TK+V                   +    GE  T                
Sbjct: 118  LTYASPLYIKITKKVSAAVEREVPLHEMDDAQQEQYARTGENPTKLEWEEEENGEDDNLG 177

Query: 148  ETQDFTK-VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206
            ++ D+   VF+GK+PIM++S  C L +  +  L  + ECPYDQGGYF+INGSEKVLIAQE
Sbjct: 178  KSDDWKDMVFVGKLPIMVKSKICHLSREQDDSLFLVNECPYDQGGYFVINGSEKVLIAQE 237

Query: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266
            + + N V VFKK QP+ Y Y AE+RS  E  +R  S+M +++  +  +  G  GQ I  T
Sbjct: 238  RSAANIVQVFKKAQPSAYTYTAEIRSALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTT 297

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            LP++++++P+ IVFRALG V+D+DIL HICYD  D+QM+E+LRP +EEAF +Q+++VALD
Sbjct: 298  LPFVKSDLPVAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALD 357

Query: 327  YIGKRGA--TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCAL 384
            +IGKRG     G+ R+KR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL CAL
Sbjct: 358  FIGKRGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCAL 417

Query: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
            GRR  DDRDH+G KRLDLAGPLL  LFR + R++  ++  Y+++CV+  +  NL   IK 
Sbjct: 418  GRREPDDRDHFGKKRLDLAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKP 477

Query: 445  KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
             T+++GLKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAK
Sbjct: 478  GTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAK 537

Query: 504  PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
            PRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS + P++EF+   G E  EE  
Sbjct: 538  PRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYE 597

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
            P   P ATKIFVNG WVGIH+DP+ LV  +   RR+  +  EV ++R+IR +E +I++D 
Sbjct: 598  PLRYPHATKIFVNGVWVGIHQDPKHLVNQVLDTRRKSYLQYEVSLIREIRDQEFKIFSDA 657

Query: 624  GRCSRPLFIVEKQR---------LLIKKRDII---ALQQRESPEDG----GWHDLVAKGF 667
            GR  RP+F V+++           L+  +D++   A +Q E PED     GW  L+  G 
Sbjct: 658  GRVMRPVFTVQQEDDPETGINKGHLVLTKDLVNRLAKEQAEPPEDPSMKLGWEGLIRAGA 717

Query: 668  IEYIDTEEEETTMISMTINDLVQARLHPEEAYAD--------------------TYTHCE 707
            +EY+D EEEET+MI MT  DL   RL       D                     YTHCE
Sbjct: 718  VEYLDAEEEETSMICMTPEDLELYRLQKAGIATDEDIGDDPNKRLKTKTNPTTHMYTHCE 777

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKP
Sbjct: 778  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKP 837

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+
Sbjct: 838  LGTTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 897

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EKK+G    E F +P   NT+ M+HG+YDKLD+DG+  PG RVSGED+IIGKT PI   E
Sbjct: 898  EKKVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDA-E 956

Query: 888  AQGQASRYT---RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
             Q   +R T   RRD S  LR +E G+VDQV++T NAD +++VKVRVR+ +IPQIGDKF+
Sbjct: 957  TQDLGTRTTMHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFA 1016

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT+G+TY QEDMP+T EG+TPDII+NPHAIPSRMTI  LIEC++ KV+   G E
Sbjct: 1017 SRHGQKGTIGVTYRQEDMPFTREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGME 1076

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTDVTVD++S+ L K GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVDD
Sbjct: 1077 GDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDD 1136

Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
            KIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVH
Sbjct: 1137 KIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVH 1196

Query: 1125 VCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            +CE CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1197 ICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMYT 1253


>gi|413915214|gb|AFW21469.1| RNA polymerase II beta subunit [Balansia obtecta]
          Length = 1261

 Score = 1465 bits (3793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 714/1256 (56%), Positives = 907/1256 (72%), Gaps = 85/1256 (6%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            EDDYDYE   +     ++E IT ED W VIS++FE KGLV QQ DSFDEF Q T+Q++V+
Sbjct: 5    EDDYDYENYGE-----DDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVN 59

Query: 63   ESADIEI-RPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            E + I + +P     PG +   A   Y+I FG + +S+P ++E+DG   +L P   R RN
Sbjct: 60   EYSTITLDQPNPPSPPGMK--IALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRN 117

Query: 122  LTYSAPLYVDVTKRVI----------------------------------KKGHDGEEVT 147
            LTY++PLY+++TK+V                                   ++  D +E  
Sbjct: 118  LTYASPLYINITKKVSAAVEREIPLHEMDDAQQAEYARTRENPTKLVWEQEESPDDDEAG 177

Query: 148  ETQDFTK-VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206
            +++D+   VF+GK+PIM++S  C L + +++ L  + ECPYDQGGYF+INGSEKVLIAQE
Sbjct: 178  KSEDWKNMVFVGKLPIMVKSKICHLSRETDESLFMVNECPYDQGGYFVINGSEKVLIAQE 237

Query: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266
            + + N V VFKK QP+ Y Y AE+RS  E  +R  S++ +++  +  +  G  GQ I  T
Sbjct: 238  RSAANIVQVFKKAQPSPYTYTAEIRSALEKGSRLISSLQLKLYGKGDSARGGFGQTIHTT 297

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            LP++++++PI IVFRALG V+D+DIL HICYD +D+QM+E+LRP +EEAF +Q+++VALD
Sbjct: 298  LPFVKSDLPIAIVFRALGVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALD 357

Query: 327  YIGKRGA--TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCAL 384
            +IGKRG     G+ R+KR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL CAL
Sbjct: 358  FIGKRGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCAL 417

Query: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
            GRR  DDRDH+G KRLDLAGPLL  LFR + R++  ++  Y+++CV+  +  NL   IK 
Sbjct: 418  GRREPDDRDHFGKKRLDLAGPLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFNLAVGIKP 477

Query: 445  KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
             T+++GLKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAK
Sbjct: 478  GTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAK 537

Query: 504  PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
            PRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS + P++EF+   G E  EE  
Sbjct: 538  PRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYE 597

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
            P   P ATKIFVNG WVG+H+DP+ LV  +   RR+  +  EV +VR+IR +E +I++D 
Sbjct: 598  PLRYPHATKIFVNGTWVGVHQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDA 657

Query: 624  GRCSRPLFIV----------EKQRLLIKKRDI--IALQQRESPEDG----GWHDLVAKGF 667
            GR  RP+F V          EK  L++ K  +  +A +Q E P+D     GW  L+  G 
Sbjct: 658  GRVMRPVFTVQQEDDPETGIEKGHLVLSKDLVNKLAKEQAEPPDDPSEKIGWEGLIRAGA 717

Query: 668  IEYIDTEEEETTMISMTINDLVQARLHPE--------------------EAYADTYTHCE 707
            +EY+D EEEET+MI MT  DL   RL                             YTHCE
Sbjct: 718  VEYLDAEEEETSMICMTPEDLELYRLQKAGVALDDDNGDDLNRRLKTKTNPTTHMYTHCE 777

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKP
Sbjct: 778  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKP 837

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+
Sbjct: 838  LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 897

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EKK+G    E F +P   +T+ M+HG+YDKLD+DG+  PG RVSGED+IIGKT PI Q+ 
Sbjct: 898  EKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQEN 957

Query: 888  AQ--GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
                 + S + RRD S  LR +E G++D V+LT NAD +++VKVRVR+ +IPQIGDKF+S
Sbjct: 958  QDLGTRTSVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTTKIPQIGDKFAS 1017

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EG+TPDII+NPHAIPSRMTI  LIEC++ KV+   G EG
Sbjct: 1018 RHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEG 1077

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFTDVTVD++S+ L K GYQ RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDK
Sbjct: 1078 DATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDK 1137

Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHV 1125
            IH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVHV
Sbjct: 1138 IHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHV 1197

Query: 1126 CEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CE CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1198 CEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|342888977|gb|EGU88188.1| hypothetical protein FOXB_01326 [Fusarium oxysporum Fo5176]
          Length = 1270

 Score = 1465 bits (3792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 727/1271 (57%), Positives = 906/1271 (71%), Gaps = 108/1271 (8%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            E DYDY           +E IT ED W VIS++FE KGL  QQ DSFDEF Q  +Q++V+
Sbjct: 7    ESDYDY---------GYDEGITPEDCWTVISSFFETKGLASQQTDSFDEFTQTMVQDLVN 57

Query: 63   ESADIEIRPESQHNPGQQS--DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            E + I +    QHNP      + A   Y+I FG + +S+P M+E+DG    L P   R R
Sbjct: 58   EYSTITL---DQHNPPAPPGVNIALRRYEIKFGSVMVSRPSMSETDGTVTNLLPYECRDR 114

Query: 121  NLTYSAPLYVDVTKRV------------------IKKGHDGEEVT--------------- 147
            NLTY+AP Y+ +TK+V                   +    GE  T               
Sbjct: 115  NLTYAAPTYLKITKKVSVAVDKEIPLHEMDDEQQAEYKRTGENPTKLVWEVEEDAGSIKA 174

Query: 148  ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
            E +    +FIGK+PIM++S  C L  +S++DL  L ECPYDQGGYF+INGSEKVLIAQE+
Sbjct: 175  EDEPSEMIFIGKMPIMVKSKICHLSSHSDEDLFMLNECPYDQGGYFVINGSEKVLIAQER 234

Query: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 267
             + N V VFKK QP+ Y Y AE+RS  E  +R  S++ +++  +  +  G  GQ I+ATL
Sbjct: 235  SAANIVQVFKKAQPSPYTYTAEIRSALEKGSRLISSLTMKLYGKGDSARGGFGQTIQATL 294

Query: 268  PYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDY 327
            P+++ ++P+ IVFRALG V+D+DIL HICYD  D+QM+E+LRP +EEAF +Q+++VALD+
Sbjct: 295  PFVKADLPVAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALDF 354

Query: 328  IGKRG----ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 383
            IGKRG    A++G  R+KR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL CA
Sbjct: 355  IGKRGNRDQASLG--REKRVRVAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCA 412

Query: 384  LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIK 443
            LGRR  DDRDH+G KRLDLAGPLL  LFR + R++  ++  Y+++CV++ ++ NL  AIK
Sbjct: 413  LGRREPDDRDHFGKKRLDLAGPLLAKLFRGIIRRINTELSNYLKRCVESNRNFNLTVAIK 472

Query: 444  AKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
              T+++GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLA
Sbjct: 473  PSTLSNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLA 532

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS A P++EF+   G E  EE 
Sbjct: 533  KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPADPLIEFMINRGMEVVEEY 592

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
             P   P ATKIFVNG WVG+H DP+ LV  +   RR+  V  EV +VRDIR +E +I++D
Sbjct: 593  EPTRYPHATKIFVNGSWVGVHADPKHLVNQVLDTRRKSYVQFEVSLVRDIRDREFKIFSD 652

Query: 623  YGRCSRPLFIVEKQ----------RLLIKKRDI--IALQQRESPEDG----GWHDLVAKG 666
             GR  RP+F V ++          +L++ K  +  +A +Q E P +     GW  L+ +G
Sbjct: 653  AGRVMRPVFTVHQEDDYENNITKGQLVLTKDHVNRLAQEQAEPPANPADKFGWDGLIREG 712

Query: 667  FIEYIDTEEEETTMISMTINDLV--------QARLHPEEAYAD----------------- 701
             +EY+D EEEET MI MT  DL         +A L  EE  A                  
Sbjct: 713  AVEYLDAEEEETAMICMTPEDLELYREQKNDEATLTEEEKRAKQEAEKREQEEDRNKRLK 772

Query: 702  --------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
                     YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  R
Sbjct: 773  TKVNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRR 832

Query: 754  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
            MDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 833  MDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDR 892

Query: 814  GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
            G FRSLFFRSY D+EKK+G    E F +P +  T+ M+HG+YDKLD+DG+  PG RVSGE
Sbjct: 893  GLFRSLFFRSYSDQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGE 952

Query: 874  DVIIGKTTPISQDEAQGQASR---YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 930
            D+IIGKT PI Q E Q   +R   + RRD S  LR +E G+VDQV+LT NAD +++VKVR
Sbjct: 953  DIIIGKTAPIDQ-ENQDLGTRTQSHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKVR 1011

Query: 931  VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 990
            VR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP++ EG+TPDII+NPHAIPSRMTI  LI
Sbjct: 1012 VRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLI 1071

Query: 991  ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 1050
            EC++ KV+   G EGDATPFTDVTVD++S+ L K GYQ RGFE MYNGHTGR+L A +F 
Sbjct: 1072 ECLLSKVSTLEGMEGDATPFTDVTVDSVSELLRKHGYQSRGFEVMYNGHTGRKLRAQVFF 1131

Query: 1051 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFL 1110
            GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FL
Sbjct: 1132 GPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFL 1191

Query: 1111 KERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 1169
            KERLF+ SDA+RVHVCE CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL
Sbjct: 1192 KERLFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQEL 1251

Query: 1170 MAMAIAPRMLT 1180
             AM IA RM T
Sbjct: 1252 QAMNIAARMFT 1262


>gi|358386392|gb|EHK23988.1| hypothetical protein TRIVIDRAFT_76818 [Trichoderma virens Gv29-8]
          Length = 1261

 Score = 1464 bits (3791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 720/1257 (57%), Positives = 904/1257 (71%), Gaps = 87/1257 (6%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            EDDYDYE        DE+E IT ED W VIS++FE KGLV QQ DSFDEF Q T+Q++V+
Sbjct: 5    EDDYDYENYG-----DEDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVN 59

Query: 63   ESADIEI-RPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            E + I + +P     PG+    A   Y+I FG + +S+P ++E+DG   +L P   R RN
Sbjct: 60   EYSTITLDQPNPPSPPGRT--IALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRN 117

Query: 122  LTYSAPLYVDVTKRV---------IKKGHDGEE-------------------------VT 147
            LTY++PLY+ +TK+V         + +  D ++                         V 
Sbjct: 118  LTYASPLYIKITKKVSAAVEREVPLHEMDDAQQEEYARTGEHPTKLEWEEEENGEDDNVG 177

Query: 148  ETQDFTK-VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206
            ++ D+   VF+GK+PIM++S  C L +  +  L  + ECPYDQGGYF+INGSEKVLIAQE
Sbjct: 178  KSDDWKDMVFVGKLPIMVKSKICHLSREQDDSLFLVNECPYDQGGYFVINGSEKVLIAQE 237

Query: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266
            + + N V VFKK QP+ Y Y AE+RS  E  +R  S+M +++  +  +  G  GQ I  T
Sbjct: 238  RSAANIVQVFKKAQPSAYTYTAEIRSALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTT 297

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            LP++++++P+ IVFRALG V+D+DIL HICYD  D+QM+E+LRP +EEAF +Q+++VALD
Sbjct: 298  LPFVKSDLPVAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALD 357

Query: 327  YIGKRGA--TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCAL 384
            +IGKRG     G+ R+KR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL CAL
Sbjct: 358  FIGKRGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCAL 417

Query: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
            GRR  DDRDH+G KRLDLAGPLL  LFR + R++  ++  Y+++CV+  +  NL   IK 
Sbjct: 418  GRREPDDRDHFGKKRLDLAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKP 477

Query: 445  KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
             T+++GLKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAK
Sbjct: 478  GTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAK 537

Query: 504  PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
            PRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS + P++EF+   G E  EE  
Sbjct: 538  PRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYE 597

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
            P   P ATKIFVNG WVG+H+DP+ LV  +   RR+  +  EV +VR+IR +E +I++D 
Sbjct: 598  PLRYPHATKIFVNGVWVGVHQDPKHLVNQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDA 657

Query: 624  GRCSRPLFIVE----------KQRLLIKKRDI--IALQQRESPEDG----GWHDLVAKGF 667
            GR  RP+F V+          K  L++ K  +  +A +Q E PED     GW  L+  G 
Sbjct: 658  GRVMRPVFTVQQEDDPETGINKGHLVLTKELVNRLAKEQAEPPEDPSMKIGWEGLIRAGA 717

Query: 668  IEYIDTEEEETTMISMTINDLVQARLHPEEAYAD--------------------TYTHCE 707
            +EY+D EEEET+MI MT  DL   RL       D                     YTHCE
Sbjct: 718  VEYLDAEEEETSMICMTPEDLELYRLQKAGISTDEDMGDDPNKRLKTKTNPTTHMYTHCE 777

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKP
Sbjct: 778  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKP 837

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+
Sbjct: 838  LGTTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 897

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EKK+G    E F +P   NT+ M+HG+YDKLD+DG+  PG RVSGED+IIGKT PI   E
Sbjct: 898  EKKVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDA-E 956

Query: 888  AQGQASRYT---RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
             Q   +R T   RRD S  LR +E G+VD V++T NAD +++VKVRVR+ +IPQIGDKF+
Sbjct: 957  TQDLGTRTTMHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKFA 1016

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT+G+TY QEDMP+T EG+TPDII+NPHAIPSRMTI  LIEC++ KV+   G E
Sbjct: 1017 SRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGME 1076

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTDVTVD++S+ L K GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVDD
Sbjct: 1077 GDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDD 1136

Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
            KIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVH
Sbjct: 1137 KIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVH 1196

Query: 1125 VCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            +CE CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1197 ICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|330922612|ref|XP_003299905.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
 gi|311326219|gb|EFQ92000.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
          Length = 1262

 Score = 1464 bits (3789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 714/1253 (56%), Positives = 914/1253 (72%), Gaps = 79/1253 (6%)

Query: 5    DYD-YEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            DYD YE++   E EDEE+ +  ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E
Sbjct: 3    DYDQYEDEGMDEYEDEEDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKE 62

Query: 64   SADIEIRPESQHNPGQQSD-FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL 122
            +  + +     +NP ++ +   +  Y++ FG++YL++P  TE DG T  L+P  ARLRNL
Sbjct: 63   NGSVILEQNQPYNPDEEDNPIIKRRYEMKFGRVYLARPTHTEGDGTTVQLYPHEARLRNL 122

Query: 123  TYSAPLYVDVTKRVI--KKGHDGE----------------------EVTETQD--FTKVF 156
            TYS  +  D+  RV+  ++G D E                      E   + D    +VF
Sbjct: 123  TYSGAMLADIENRVMVAREGRDPEADDDEEMEGGYTGGQNQIRWERENMSSDDGAAARVF 182

Query: 157  IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF 216
            IGK+P+MLRS  C L   S+ DL  L ECPYDQGGYF+INGSEKVLIAQE+ + N V VF
Sbjct: 183  IGKLPVMLRSELCHLRAQSDADLFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVF 242

Query: 217  KKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS--SGQYIRATLPYIRTEI 274
            +K+Q     ++AE+RS  E   R  S+  ++    + A  G    G +  ATLPYI+ ++
Sbjct: 243  RKKQ-GPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADV 301

Query: 275  PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT 334
            P+ IVFRALG V+D++IL HI +D  DTQ +ELL+PS+EE  V+Q+++ ALD+I KRGA 
Sbjct: 302  PMAIVFRALGIVSDEEILSHIVFDRNDTQTLELLKPSIEEGSVVQDRETALDFIAKRGAN 361

Query: 335  VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 394
             G TRD+R+K+A++I+Q+E LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH
Sbjct: 362  SG-TRDRRLKFARDIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDH 420

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPL+  LFR+LF KLT+DV  Y+Q+CV+N +D N+Q A+KA TIT+GLKYS
Sbjct: 421  FGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQDFNVQMAVKASTITNGLKYS 480

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA  +AGVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG
Sbjct: 481  LATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWG 540

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNL+LM Y++VGS A PI++F+ +   +  EE      P ATK+
Sbjct: 541  LVCPAETPEGQACGLVKNLSLMCYVSVGSDATPIVDFMTQRNMQLLEEYDQNQSPDATKV 600

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVG+H + + LV  ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+V
Sbjct: 601  FVNGVWVGVHSNAQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVV 660

Query: 634  EK------QRLLIKKRDI---IALQQRESPEDGGWHD------------LVAKGFIEYID 672
            E       +  LI  ++I   +  +Q E+ +  GW +            L+  G +EY+D
Sbjct: 661  ENDVRKPNRNHLIFTKEISNKLKSEQMEASQRQGWSEEEVEQATYGWRGLIQDGVVEYLD 720

Query: 673  TEEEETTMISMTINDLVQ---------------------ARLHP-EEAYADTYTHCEIHP 710
             EEEET MI+ +  DL +                      RL P  +    +YTHCEIHP
Sbjct: 721  AEEEETAMITFSPEDLEEWREMKMGLPMTDHSLEGSQRLRRLKPLPDPRIHSYTHCEIHP 780

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            ++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TN+  RM+T+  VLYYPQKPL T
Sbjct: 781  AMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLAT 840

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME+L FR+LPAG NAIVAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK+
Sbjct: 841  TRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKR 900

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ- 889
            +G  V E F +P R++T+ ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D A+ 
Sbjct: 901  IGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIATDAAEL 960

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ +  +T+RD S  LR +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHG
Sbjct: 961  GQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHG 1020

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP++ EG+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EGDAT
Sbjct: 1021 QKGTIGITYRQEDMPFSREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDAT 1080

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            PFTDVTVD +S+ L   GYQ RGFE MYNGHTG+++   IFLGPTYYQRL+HMVDDKIH+
Sbjct: 1081 PFTDVTVDQVSQLLENAGYQKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHA 1140

Query: 1069 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 1128
            R RGP+QILTRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ 
Sbjct: 1141 RARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDI 1200

Query: 1129 CGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CGL++ IANLKKN +ECR C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1201 CGLMSPIANLKKNLYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1253


>gi|413915216|gb|AFW21470.1| RNA polymerase II beta subunit [Neotyphodium aotearoae]
          Length = 1261

 Score = 1463 bits (3787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 716/1257 (56%), Positives = 908/1257 (72%), Gaps = 87/1257 (6%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            E+DYDYE   +     ++E IT ED W VIS++FE KGLV QQ DSFDEF Q T+Q++V+
Sbjct: 5    EEDYDYENYGE-----DDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVN 59

Query: 63   ESADIEI-RPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            E + I + +P     PG +   A   Y+I FG + +S+P ++E+DG   +L P   R RN
Sbjct: 60   EYSTITLDQPNPPSPPGMK--IALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRN 117

Query: 122  LTYSAPLYVDVTKRV---------------------IKKGHD-------------GEEVT 147
            LTY++PLY+++TK+V                      K G +              +E  
Sbjct: 118  LTYASPLYINITKKVSAAIEREVPLHEMDDAQQAEYAKTGENPTKLIWEQEESPEDDEAG 177

Query: 148  ETQDFTK-VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206
            +++D+   VF+GK+PIM++S  C L + +++ L  + ECPYDQGGYF+INGSEKVLIAQE
Sbjct: 178  KSEDWKNMVFVGKLPIMVKSKICHLSRETDESLFMVNECPYDQGGYFVINGSEKVLIAQE 237

Query: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266
            + + N V VFKK QP+ + Y AE+RS  E  +R  S++ +++  +  +  G  GQ I  T
Sbjct: 238  RSAANIVQVFKKAQPSPFTYTAEIRSALEKGSRLISSLQLKLYGKGDSARGGFGQTIHTT 297

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            LP++++++PI IVFRALG V+D+DIL HICYD +D+QM+E+LRP +EEAF +Q+++VALD
Sbjct: 298  LPFVKSDLPIAIVFRALGVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALD 357

Query: 327  YIGKRGA--TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCAL 384
            +IGKRG     G+ R+KR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL CAL
Sbjct: 358  FIGKRGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCAL 417

Query: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
            GRR  DDRDH+G KRLDLAGPLL  LFR + R++  ++  Y+++CV+  +  NL   IK 
Sbjct: 418  GRREPDDRDHFGKKRLDLAGPLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFNLAVGIKP 477

Query: 445  KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
             T+++GLKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAK
Sbjct: 478  ATLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAK 537

Query: 504  PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
            PRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS + P++EF+   G E  EE  
Sbjct: 538  PRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYE 597

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
            P   P ATKIFVNG WVG+H+DP+ LV  +   RR+  +  EV +VR+IR +E +I++D 
Sbjct: 598  PLRYPHATKIFVNGTWVGVHQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDA 657

Query: 624  GRCSRPLFIV----------EKQRLLIKKRDI--IALQQRESPEDG----GWHDLVAKGF 667
            GR  RP+F V          EK  L++ K  +  +A +Q E  ED     GW  L+  G 
Sbjct: 658  GRVMRPVFTVQQEDDPETGIEKGHLVLSKELVNKLAKEQAEPSEDPSEKIGWEGLIRAGA 717

Query: 668  IEYIDTEEEETTMISMTINDLVQARLHPEEAYAD--------------------TYTHCE 707
            +EY+D EEEET+MI MT  DL   RL       D                     YTHCE
Sbjct: 718  VEYLDAEEEETSMICMTPEDLELYRLQKAGVALDDDIGDDLNRRLKTRTNPTTHMYTHCE 777

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKP
Sbjct: 778  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKP 837

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+
Sbjct: 838  LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 897

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EKK+G    E F +P   +T+ M+HG+YDKLD+DG+  PG RVSGED+IIGKT PI Q E
Sbjct: 898  EKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQ-E 956

Query: 888  AQGQASRYT---RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
             Q   +R T   RRD S  LR +E G++D V+LT NAD +++VKVRVR+ ++PQIGDKF+
Sbjct: 957  NQDLGTRTTVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTTKVPQIGDKFA 1016

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT+G+TY QEDMP+T EG+TPDII+NPHAIPSRMTI  LIEC++ KV+   G E
Sbjct: 1017 SRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGME 1076

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTDVTVD++S+ L K GYQ RGFE MYNGHTG++L A +F GPTYYQRL+HMVDD
Sbjct: 1077 GDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDD 1136

Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
            KIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVH
Sbjct: 1137 KIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVH 1196

Query: 1125 VCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            VCE CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1197 VCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|302892877|ref|XP_003045320.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
 gi|256726245|gb|EEU39607.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
          Length = 1261

 Score = 1462 bits (3785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/1254 (57%), Positives = 901/1254 (71%), Gaps = 81/1254 (6%)

Query: 5    DYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
            DY+ E       +D+EE IT ED W VIS++FE KGLV QQ DSFDEF Q T+Q++V+E 
Sbjct: 3    DYEEELSDYDNYDDQEEGITPEDCWTVISSFFESKGLVSQQTDSFDEFTQTTIQDLVNEY 62

Query: 65   ADIEI-RPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            + I + +P     PG     A   Y+I FG + +S+P ++E+DG   +L P   R RNLT
Sbjct: 63   SVISLDQPNPPSPPG--VSIALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLT 120

Query: 124  YSAPLYVDVTKRV---IKKGHDGEEVTETQ---------DFTK----------------- 154
            Y++PLY+ +TK+V   ++K     E+ E Q         + TK                 
Sbjct: 121  YASPLYIKITKKVSVAVEKEVPLHEMDEDQQAEYKRTGENPTKLVWELEESGDDEGKADD 180

Query: 155  -----VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMS 209
                 VF+GK+PIM++S  C L    + +L  + ECPYDQGGYF+INGSEKVLIAQE+ +
Sbjct: 181  SWKDMVFVGKLPIMVKSKICHLSSEHDDNLFLVNECPYDQGGYFVINGSEKVLIAQERSA 240

Query: 210  TNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPY 269
             N V VFKK QP+ Y Y AE+RS  E  +R  S+M +++  +  +  G  GQ I  TLP+
Sbjct: 241  ANIVQVFKKAQPSPYTYTAEIRSALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPF 300

Query: 270  IRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIG 329
            ++ ++P+ IVFRALG V+D+DIL HICYD  D+QM+E+LRP +EEAF +Q+++VALD+IG
Sbjct: 301  VKADLPVAIVFRALGVVSDEDILNHICYDRTDSQMLEMLRPCIEEAFCVQDREVALDFIG 360

Query: 330  KRGA--TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRR 387
            KRG     G+ R+KR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL CALGRR
Sbjct: 361  KRGNRDQAGLGREKRVRVAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRR 420

Query: 388  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 447
              DDRDH+G KRLDLAGPLL  LFR + R++  ++  Y+++CV+  +  NL   IK  T+
Sbjct: 421  EPDDRDHFGKKRLDLAGPLLAKLFRGIVRRMNTELSNYLKRCVEGNRHFNLAVGIKPGTL 480

Query: 448  TSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 506
            ++GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQ
Sbjct: 481  SNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQ 540

Query: 507  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 566
            LHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS + P++EF+   G E  EE  P  
Sbjct: 541  LHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLR 600

Query: 567  IPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 626
             P ATKIFVNG W G+H DP+ LV  +   RR+  +  EV +VRDIR +E ++++D GR 
Sbjct: 601  YPHATKIFVNGVWCGVHSDPKHLVSQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRV 660

Query: 627  SRPLFIVEKQR---------LLIKKRDII---ALQQRESPEDG----GWHDLVAKGFIEY 670
             RP+F V+++           L+  +D++   A +Q E PED     GW  L+  G IEY
Sbjct: 661  MRPVFTVQQEDDHESGIAKGALVLTKDLVNKLAKEQAEPPEDPSMKIGWEGLIRAGTIEY 720

Query: 671  IDTEEEETTMISMTINDLVQARLHPEEAYAD--------------------TYTHCEIHP 710
            +D EEEET MI MT  DL   R+       D                     YTHCEIHP
Sbjct: 721  LDAEEEETAMICMTPEDLDLYRMQKAGYVVDDDNTDDPNRRLKTKTNPTTHMYTHCEIHP 780

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKPL T
Sbjct: 781  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLAT 840

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK
Sbjct: 841  TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKK 900

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 890
            +G    E F +P + +T+ M+HG+YDKLD+DG+  PG RVSGED+IIGKT PI Q E Q 
Sbjct: 901  VGLNYTEVFEKPFQQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQ-ENQD 959

Query: 891  QASRYT---RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
              +R T   RRD S  LR +E G+VD V++T NAD +++VKVRVR+ +IPQIGDKF+SRH
Sbjct: 960  LGTRTTVHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRH 1019

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGT+G+TY QEDMP++ EG+TPDII+NPHAIPSRMTI  LIEC++ KV+   G EGDA
Sbjct: 1020 GQKGTIGVTYRQEDMPFSREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDA 1079

Query: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            TPFTDVTVD++S+ L K GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVDDKIH
Sbjct: 1080 TPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIH 1139

Query: 1068 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 1127
            +R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVHVCE
Sbjct: 1140 ARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHVCE 1199

Query: 1128 HCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1200 VCGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|346320677|gb|EGX90277.1| DNA-directed RNA polymerase II polypeptide [Cordyceps militaris CM01]
          Length = 1261

 Score = 1462 bits (3785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 717/1255 (57%), Positives = 905/1255 (72%), Gaps = 85/1255 (6%)

Query: 7    DYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            DYE+++  E  +E+  IT ED W VIS++FE KGLV QQ  SFDEF Q T+Q++V E + 
Sbjct: 3    DYEDEYDYENYEEDSGITPEDCWTVISSFFESKGLVSQQTASFDEFTQTTIQDLVSEYSK 62

Query: 67   IEIRPESQHNPGQQSDFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 124
            I +    Q NP    +   ++  Y+I FG I +S+P ++E+DG   +L P   R RNLTY
Sbjct: 63   ISL---DQPNPPSTDERKISVRRYEIEFGSIMVSRPSISETDGTVTSLLPYECRDRNLTY 119

Query: 125  SAPLYVDVTKRV---------------------IKKGH-------DGEEVTETQDFTK-- 154
            +AP+Y+ +TK+V                      K G        + E+V+E ++  K  
Sbjct: 120  AAPVYIKITKKVQAAVETEIPLHELDDAQHTEYAKSGELPTRLAWESEDVSEPENANKPD 179

Query: 155  -----VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMS 209
                 VF+GK+P+M++S  C L +  +++L  + ECPYDQGGYF+INGSEKVLIAQE+ +
Sbjct: 180  AWKDMVFVGKMPVMVKSKVCHLSREHDENLFLVNECPYDQGGYFVINGSEKVLIAQERSA 239

Query: 210  TNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPY 269
             N V VFKK QP+ Y Y AE+RS  E  +R  S+M +++  +  +  G  GQ I  TLP+
Sbjct: 240  ANIVQVFKKAQPSPYTYTAEIRSALEKGSRLISSMMLKLYGKGESARGGFGQTIHTTLPF 299

Query: 270  IRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIG 329
            +++++P+ IVFRALG V+D+DIL HICYD +D+QM+E+LRP +EEAF +Q+++VALD+IG
Sbjct: 300  VKSDLPVAIVFRALGVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIG 359

Query: 330  KRGA--TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRR 387
            KRG     G+ RDKRI+ A++ILQKE LPH+      ET+KA++ GY++H+LL CALGRR
Sbjct: 360  KRGNRDQAGLGRDKRIRVARDILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRR 419

Query: 388  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 447
              DDRDH+G KRLDLAGPLL  LFR + R++  ++  Y+++CV+  +  NL   IK  T+
Sbjct: 420  EPDDRDHFGKKRLDLAGPLLAKLFRGIMRRMHSELANYLRRCVEGNRHFNLAVGIKPGTL 479

Query: 448  TSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 506
            ++GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQ
Sbjct: 480  SNGLKYSLATGNWGDQKKAANSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQ 539

Query: 507  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 566
            LHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS A P+++F+   G E  EE  P  
Sbjct: 540  LHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIDFMINRGMEVIEEYEPLR 599

Query: 567  IPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 626
             P ATKIFVNG WVG+H+DP+ LV  +   RR+  +  EV ++RDIR +E +I++D GR 
Sbjct: 600  YPHATKIFVNGTWVGVHQDPKHLVDQVFDTRRKSYLQYEVSLIRDIRDQEFKIFSDAGRV 659

Query: 627  SRPLFIV----------EKQRLLIKKRDI--IALQQRESPEDG----GWHDLVAKGFIEY 670
             RP+F V          EK +L + K  +  +A +Q + P+D     GW  L+  G IEY
Sbjct: 660  MRPVFTVQQKNDPETGLEKGQLGLTKDLVNKLAQEQADPPDDSELKMGWEGLIKAGAIEY 719

Query: 671  IDTEEEETTMISMTINDLVQARLHPEEAYAD---------------------TYTHCEIH 709
            +D EEEET+MI MT  DL   RL       D                      YTHCEIH
Sbjct: 720  LDAEEEETSMICMTPEDLELYRLQKAGLSVDDDHEGGDLNKRLKTKTNPTTHMYTHCEIH 779

Query: 710  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
            PS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKPL 
Sbjct: 780  PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLA 839

Query: 770  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 829
            TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+EK
Sbjct: 840  TTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEK 899

Query: 830  KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ 889
            K+G    E F +P   +T+ M+HG+YDKLD+DG+  PG RVSGED+IIGKT PI   E Q
Sbjct: 900  KVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDP-ETQ 958

Query: 890  GQASRYT---RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 946
               +R T   RRD S  LR +E G+VDQV++T NAD +++VKVRVR+ +IPQIGDKF+SR
Sbjct: 959  DLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASR 1018

Query: 947  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
            HGQKGT+G+TY QEDMP+T EG+TPDII+NPHAIPSRMTI  LIEC++ KV+   G EGD
Sbjct: 1019 HGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGD 1078

Query: 1007 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            ATPFTDVTVD++S  L K GYQ RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKI
Sbjct: 1079 ATPFTDVTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKI 1138

Query: 1067 HSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVC 1126
            H+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVH+C
Sbjct: 1139 HARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHIC 1198

Query: 1127 EHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            E CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1199 EICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|171677674|ref|XP_001903788.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936905|emb|CAP61564.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1278

 Score = 1462 bits (3785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 719/1256 (57%), Positives = 899/1256 (71%), Gaps = 80/1256 (6%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
             +DD +YE   +   + +E  IT ED W VISAYF+ KGLV QQ+DSFDEF  +T+Q +V
Sbjct: 18   FDDDNNYENGDELGVDQDEAAITPEDCWDVISAYFDMKGLVSQQIDSFDEFTSSTIQSLV 77

Query: 62   DESADIEIRPESQHNPG--QQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARL 119
            DE AD+ +      NPG  Q  D A   Y I FG + +SKP +TE  GET +L P   R 
Sbjct: 78   DEYADLTL---DHPNPGDDQGRDIALRRYDIHFGNVMISKPTLTEISGETTSLLPYECRD 134

Query: 120  RNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTK------------------------- 154
            RNLTYSAP+Y  V+KR     ++   + E  D                            
Sbjct: 135  RNLTYSAPMYCKVSKRARVAINEPVPLNELDDEQHELMRETGEHPMTIRWEEEESDMPGE 194

Query: 155  -----------VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLI 203
                       +F+GK+P+M++S  C LY   ++ L  L ECPYDQGGYFIINGSEKVLI
Sbjct: 195  GSKGENDRGDLIFLGKLPVMVKSQICHLYGEDDESLFVLNECPYDQGGYFIINGSEKVLI 254

Query: 204  AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI 263
            AQE+ + N V VFKK      +Y AE+RS  E  +R  S++ +++ ++ S + G     +
Sbjct: 255  AQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHTKASNEKGRLANTV 314

Query: 264  RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQV 323
              TLPY+R ++ + IVFRALG V+D+DIL HICYD +DTQM+E LRP +EEAF IQ++++
Sbjct: 315  SVTLPYVREDVSLAIVFRALGIVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDREI 374

Query: 324  ALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
            ALD+IGKRG   +G  R  RI+ AK++LQKEMLPH+   + CET+KA++ GY++++LL C
Sbjct: 375  ALDFIGKRGNGNMGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVNKLLQC 434

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
            ALGRR  DDRDH+G KRLDLAGPLL  LFR + R++T+D+  Y+++C+D  K   L   I
Sbjct: 435  ALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCLDTNKHFTLALGI 494

Query: 443  KAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501
            KA T+T+ LKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKL
Sbjct: 495  KANTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKL 554

Query: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561
            AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VG+ A PI++F+   G +  EE
Sbjct: 555  AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVDFMTARGMDVLEE 614

Query: 562  ISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 621
              P   P ATK+FVNG WVG+H DP+ LV  ++ LRR+  ++ EV +VRDIR +E +I++
Sbjct: 615  YEPLRAPNATKVFVNGTWVGVHNDPKQLVTLVQDLRRKNVISFEVSLVRDIREREFKIFS 674

Query: 622  DYGRCSRPLFIVEKQR---------LLIKKRDIIALQQRES------PEDGGWHDLVAKG 666
            D GR  RPLF VE++           LI  +D IA  QR+       P+  GW  L+  G
Sbjct: 675  DAGRVMRPLFTVEQEEKGNHGVEKGQLILNKDHIARLQRDKELGKYHPDYWGWQGLLKSG 734

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT-------------------YTHCE 707
             IEY+D EEEETTMI MT  DL   R+     + +T                   YTHCE
Sbjct: 735  AIEYLDAEEEETTMICMTPQDLDDFRMTKLGFHIETTSGQGNNRIRTKVNKTTHMYTHCE 794

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHP+++LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKP
Sbjct: 795  IHPAMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKP 854

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSV+MNQSSIDRG FRSLFFRSY D 
Sbjct: 855  LATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVVMNQSSIDRGIFRSLFFRSYTDC 914

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EK++G  + E F +P R +T+ ++HG+YDKLD DG+  PG RVSGED+IIGKT+PI+ D 
Sbjct: 915  EKRVGINIVEMFEKPTRGDTLRLKHGTYDKLDADGIIAPGIRVSGEDIIIGKTSPINPDN 974

Query: 888  AQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
            A+ GQ   ++ +RD S  LR +E+G+VD V+LTTN DG+R+VKVRVR+ +IPQIGDKF+S
Sbjct: 975  AELGQRQQQHVKRDASTPLRSTESGIVDSVVLTTNQDGMRYVKVRVRTTKIPQIGDKFAS 1034

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY  EDMP+T EGITPDII+NPHAIPSRMTI  L+EC++ KVA   G EG
Sbjct: 1035 RHGQKGTIGLTYRMEDMPFTAEGITPDIIINPHAIPSRMTIAHLVECLLSKVATLKGLEG 1094

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFTDVTVD++S  L + GYQ RGFE +Y+GHTGR+L A  F GPTYYQRL+HMVDDK
Sbjct: 1095 DATPFTDVTVDSVSDLLREQGYQSRGFEILYHGHTGRKLRAQCFFGPTYYQRLRHMVDDK 1154

Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHV 1125
            IH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDAYRVH+
Sbjct: 1155 IHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAYRVHI 1214

Query: 1126 CEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CE CGL+  IANL K SFECR CKNKT I QVH+PYA KLLFQELM+M IA RM T
Sbjct: 1215 CEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSMGIASRMFT 1270


>gi|229662009|gb|ACQ84444.1| DNA-dependent RNA polymerase II beta subunit [Epichloe festucae]
          Length = 1261

 Score = 1462 bits (3784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 719/1257 (57%), Positives = 906/1257 (72%), Gaps = 87/1257 (6%)

Query: 3    EDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 62
            E+DYDYE   +     ++E IT ED W VIS++FE KGLV QQ DSFDEF Q T+Q++V+
Sbjct: 5    EEDYDYENYGE-----DDEGITPEDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVN 59

Query: 63   ESADIEI-RPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            E + I + +P     PG +   A   Y+I FG + +S+P ++E+DG   +L P   R RN
Sbjct: 60   EYSTITLDQPNPPSPPGIK--IALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRN 117

Query: 122  LTYSAPLYVDVTKRV---------------------IKKGHDG-------EEVTETQDFT 153
            LTY++PLY+++TK+V                      K G +        EE  E  D  
Sbjct: 118  LTYASPLYINITKKVSAAIEREVPLHEMDDAQQAEYAKTGENPTKLIWEQEESPEDDDAG 177

Query: 154  K-------VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206
            K       VF+GK+PIM++S  C L + +++ L  + ECPYDQGGYF+INGSEKVLIAQE
Sbjct: 178  KSEDWKNMVFVGKLPIMVKSKICHLSRETDESLFMVNECPYDQGGYFVINGSEKVLIAQE 237

Query: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266
            + + N V VFKK QP+ + Y AE+RS  E  +R  S++ +++  +  +  G  GQ I  T
Sbjct: 238  RSAANIVQVFKKAQPSPFTYTAEIRSALEKGSRLISSLQLKLYGKGDSARGGFGQTIHTT 297

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            LP++++++PI IVFRALG V+D+DIL HICYD +D+QM+E+LRP +EEAF +Q+++VALD
Sbjct: 298  LPFVKSDLPIAIVFRALGVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALD 357

Query: 327  YIGKRGA--TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCAL 384
            +IGKRG     G+ R+KR++ AK+ILQKE LPH+   +  ET+KA++ GY++H+LL CAL
Sbjct: 358  FIGKRGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCAL 417

Query: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
            GRR  DDRDH+G KRLDLAGPLL  LFR + R++  ++  Y+++CV+  +  NL   IK 
Sbjct: 418  GRREPDDRDHFGKKRLDLAGPLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFNLAVGIKP 477

Query: 445  KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
             T+++GLKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAK
Sbjct: 478  GTLSNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAK 537

Query: 504  PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
            PRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS + P++EF+   G E  EE  
Sbjct: 538  PRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYE 597

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
            P   P ATKIFVNG WVG+H+DP+ LV  +   RR+  +  EV +VR+IR +E +I++D 
Sbjct: 598  PLRYPHATKIFVNGTWVGVHQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDA 657

Query: 624  GRCSRPLFIV----------EKQRLLIKKRDI--IALQQRESPEDG----GWHDLVAKGF 667
            GR  RP+F V          EK  L++ K  +  +A +Q E  ED     GW  L+  G 
Sbjct: 658  GRVMRPVFTVQQEDDPETGIEKGHLVLSKELVNKLAKEQAEPSEDPSEKIGWEGLIRAGA 717

Query: 668  IEYIDTEEEETTMISMTINDLVQARLHPEEAYAD--------------------TYTHCE 707
            +EY+D EEEET+MI MT  DL   RL       D                     YTHCE
Sbjct: 718  VEYLDAEEEETSMICMTPEDLELYRLQKAGVALDDDIGDDLNRRLKTRTNPTTHMYTHCE 777

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKP
Sbjct: 778  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKP 837

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+
Sbjct: 838  LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 897

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EKK+G    E F +P   +T+ M+HG+YDKLD+DG+  PG RVSGED+IIGKT PI Q E
Sbjct: 898  EKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQ-E 956

Query: 888  AQGQASRYT---RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
             Q   +R T   RRD S  LR +E G++D V+LT NAD +++VKVRVR+ ++PQIGDKF+
Sbjct: 957  NQDLGTRTTVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTTKVPQIGDKFA 1016

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT+G+TY QEDMP+T EG+TPDII+NPHAIPSRMTI  LIEC++ KV+   G E
Sbjct: 1017 SRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGME 1076

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTDVTVD++S+ L K GYQ RGFE MYNGHTG++L A +F GPTYYQRL+HMVDD
Sbjct: 1077 GDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDD 1136

Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
            KIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVH
Sbjct: 1137 KIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVH 1196

Query: 1125 VCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            VCE CGL+  IANL K SFECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1197 VCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|336466639|gb|EGO54804.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
            2508]
 gi|350286464|gb|EGZ67711.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
            2509]
          Length = 1287

 Score = 1461 bits (3781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 722/1262 (57%), Positives = 911/1262 (72%), Gaps = 86/1262 (6%)

Query: 3    EDDYDYEEQHQQEEEDEEEE---ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQE 59
            ++D +YE     ++ED+  +   IT ED+W VIS+YF+ KGLV QQ+DSF+EF  +T+Q 
Sbjct: 20   DNDDNYENLSTFDDEDDGSDPNAITPEDSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQS 79

Query: 60   IVDESADIEI-RPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 118
            ++DE AD+ +  P    + G++       Y + FG+I +S+P +TE+ GET +L P   R
Sbjct: 80   LIDEYADLTLDHPSPGDDEGREIILRR--YDVHFGEIIISRPTLTEATGETISLLPYECR 137

Query: 119  LRNLTYSAPLYVDVTKR-------------VIKKGHD-----GEEVTETQDFTK------ 154
             RNLTYSAP+Y  VTKR             +    HD     GE  T  +   +      
Sbjct: 138  DRNLTYSAPIYCKVTKRARIAVSEKKPLNQLTDDEHDHMARTGEHPTALRWIEEESAPPE 197

Query: 155  ---------------VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
                           +F+GK+PIM++S  C LY   ++ L  L ECPYDQGGYFIINGSE
Sbjct: 198  PPKDDKINPENLKGYLFLGKIPIMVKSKICHLYMEDDESLFTLNECPYDQGGYFIINGSE 257

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
            KVLIAQE+ + N V VFKK      +Y AE+RS  E  +R  S++ +R+ ++     G  
Sbjct: 258  KVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKADQNKGRL 317

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
               +  TLPY++ E+ + IVFRALG V+D+DIL HICYD +D+QM+E LRP +EEAF IQ
Sbjct: 318  ANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQ 377

Query: 320  NQQVALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            +++VALDYIGKRG  + G+ R+ RIK AKE+LQKE+LPH+   + CET+KA++ GY++H+
Sbjct: 378  DREVALDYIGKRGNGSTGINRNGRIKAAKEMLQKELLPHISQAEGCETRKAFFLGYMVHK 437

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LL C LGRR  DDRDH+G KRLDLAGPLL  LFR + R+LT+D+  Y+++CVD  K  +L
Sbjct: 438  LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHFSL 497

Query: 439  QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
               IKA T+T+GLKYSLATGNWG Q  A  + AGVSQVLNR T++STLSHLRR N+PIGR
Sbjct: 498  ALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGR 557

Query: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
            +GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +++VG+ A PI+EF+     E
Sbjct: 558  DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARNME 617

Query: 558  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
              EE  P   P ATK+FVNG WVG+H+DP+ LV  ++ LRR+  ++ EV +VRDIR +E 
Sbjct: 618  VLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQNLRRKNIISFEVSLVRDIRDREF 677

Query: 618  RIYTDYGRCSRPLFIVE----------KQRLLIKKRDIIALQQ-----RESPEDGGWHDL 662
            +I++D GR  RPLF+VE          K +L++ K  I  L+Q     +   E  GW  L
Sbjct: 678  KIFSDAGRVMRPLFVVEQEDNSESGVEKGQLILTKEHIRRLEQDKELGKYHEEYFGWQGL 737

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHP------EEAYAD--------------- 701
            +  G IEY+D EEEET MI MT  DL   R H       E+  A+               
Sbjct: 738  LESGAIEYLDAEEEETAMICMTPEDLDTYRQHKFKGREFEDDAANRGNSRIKTKFNPTTH 797

Query: 702  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
             YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +L
Sbjct: 798  MYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANIL 857

Query: 762  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
            YYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFF
Sbjct: 858  YYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFF 917

Query: 822  RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
            RSY D EK++G  + E F +PDRSNT+  +HG+YDKL++DG+  PG RV+G+D+IIGKT+
Sbjct: 918  RSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGKTS 977

Query: 882  PISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            PI+ D  + GQ  +++ +RD S  LR +E+G+VD V  TTN DGLR+VKVRVR+ +IPQI
Sbjct: 978  PINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTKIPQI 1037

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV A
Sbjct: 1038 GDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVGA 1097

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
              G EGDATPFTDVTVD++S  L + GYQ RGFE MY+GHTG++L A +F GPTYYQRL+
Sbjct: 1098 LKGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPTYYQRLR 1157

Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
            HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SD
Sbjct: 1158 HMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSD 1217

Query: 1120 AYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
            A+RVH+CE CGL+  IANL K SFECR CKNKT I QVH+PYA KLLFQELM+M IA R+
Sbjct: 1218 AFRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSMNIASRL 1277

Query: 1179 LT 1180
             T
Sbjct: 1278 FT 1279


>gi|28881404|emb|CAD70445.1| DNA-dependent RNA polymerase II RPB140 (RPB2) [Neurospora crassa]
          Length = 1287

 Score = 1460 bits (3779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 723/1262 (57%), Positives = 912/1262 (72%), Gaps = 86/1262 (6%)

Query: 3    EDDYDYEEQHQQEEEDEEEE---ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQE 59
            ++D +YE     ++ED+  +   IT ED+W VIS+YF+ KGLV QQ+DSF+EF  +T+Q 
Sbjct: 20   DNDDNYENLSTFDDEDDGSDPNAITPEDSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQS 79

Query: 60   IVDESADIEI-RPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 118
            ++DE AD+ +  P    + G++       Y + FG+I +S+P +TE+ GET +L P   R
Sbjct: 80   LIDEYADLTLDHPSPGDDEGREIILRR--YDVHFGEIIISRPTLTEATGETISLLPYECR 137

Query: 119  LRNLTYSAPLYVDVTKR-------------VIKKGHD-----GEEVTETQDFTK------ 154
             RNLTYSAP+Y  VTKR             +    HD     GE  T  +   +      
Sbjct: 138  DRNLTYSAPIYCKVTKRARIAVSEKKPLNQLTDDEHDHMARTGEHPTALRWIEEESAPPE 197

Query: 155  ---------------VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
                           +F+GK+PIM++S  C LY   ++ L  L ECPYDQGGYFIINGSE
Sbjct: 198  PPKDDKINPENLKGYLFLGKIPIMVKSKICHLYMEDDESLFTLNECPYDQGGYFIINGSE 257

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
            KVLIAQE+ + N V VFKK      +Y AE+RS  E  +R  S++ +R+ ++     G  
Sbjct: 258  KVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKADQNKGRL 317

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
               +  TLPY++ E+ + IVFRALG V+D+DIL HICYD +D+QM+E LRP +EEAF IQ
Sbjct: 318  ANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQ 377

Query: 320  NQQVALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            +++VALDYIGKRG  + G+ R+ RIK AKE+LQKE+LPH+   + CET+KA++ GY++H+
Sbjct: 378  DREVALDYIGKRGNGSTGINRNGRIKAAKEMLQKELLPHISQAEGCETRKAFFLGYMVHK 437

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LL C LGRR  DDRDH+G KRLDLAGPLL  LFR + R+LT+D+  Y+++CVD  K  +L
Sbjct: 438  LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHFSL 497

Query: 439  QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
               IKA T+T+GLKYSLATGNWG Q  A  + AGVSQVLNR T++STLSHLRR N+PIGR
Sbjct: 498  ALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGR 557

Query: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
            +GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +++VG+ A PI+EF+     E
Sbjct: 558  DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARNME 617

Query: 558  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
              EE  P   P ATK+FVNG WVG+H+DP+ LV  ++ LRR+  ++ EV +VRDIR +E 
Sbjct: 618  VLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQNLRRKNIISFEVSLVRDIRDREF 677

Query: 618  RIYTDYGRCSRPLFIVE----------KQRLLIKKRDIIALQQRES----PED-GGWHDL 662
            +I++D GR  RPLF+VE          K +L++ K  I  L+Q +      ED  GW  L
Sbjct: 678  KIFSDAGRVMRPLFVVEQEDNSESGVEKGQLILTKEHIRRLEQDKELGKYHEDYFGWQGL 737

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHP------EEAYAD--------------- 701
            +  G IEY+D EEEET MI MT  DL   R H       E+  A+               
Sbjct: 738  LESGAIEYLDAEEEETAMICMTPEDLDTYRQHKFKGREFEDDAANRGNSRIKTKFNPTTH 797

Query: 702  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
             YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +L
Sbjct: 798  MYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANIL 857

Query: 762  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
            YYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFF
Sbjct: 858  YYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFF 917

Query: 822  RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
            RSY D EK++G  + E F +PDRSNT+  +HG+YDKL++DG+  PG RV+G+D+IIGKT+
Sbjct: 918  RSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGKTS 977

Query: 882  PISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            PI+ D  + GQ  +++ +RD S  LR +E+G+VD V  TTN DGLR+VKVRVR+ +IPQI
Sbjct: 978  PINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTKIPQI 1037

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV A
Sbjct: 1038 GDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVGA 1097

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
              G EGDATPFTDVTVD++S  L + GYQ RGFE MY+GHTG++L A +F GPTYYQRL+
Sbjct: 1098 LKGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPTYYQRLR 1157

Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
            HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SD
Sbjct: 1158 HMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSD 1217

Query: 1120 AYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
            A+RVH+CE CGL+  IANL K SFECR CKNKT I QVH+PYA KLLFQELM+M IA R+
Sbjct: 1218 AFRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSMNIASRL 1277

Query: 1179 LT 1180
             T
Sbjct: 1278 FT 1279


>gi|367030607|ref|XP_003664587.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
            42464]
 gi|347011857|gb|AEO59342.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
            42464]
          Length = 1276

 Score = 1459 bits (3778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 723/1256 (57%), Positives = 905/1256 (72%), Gaps = 81/1256 (6%)

Query: 3    EDDYDYEEQHQQEEED--EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            EDD  YE  +  ++    +E  IT ED W VI+AYF+ KGLV QQ+DSFDEF   T+Q +
Sbjct: 16   EDDDQYETGNGLDDVGLADENAITPEDCWEVIAAYFDSKGLVSQQIDSFDEFTSTTIQSL 75

Query: 61   VDESADIEIRPESQHNPGQQS--DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 118
            VDE AD+ +      NPG  +  D A   Y I F  + +SKP +TE+ GET +L P   R
Sbjct: 76   VDEYADLTL---DHPNPGDDAGRDIAMRRYDIHFDNVLISKPTLTEATGETTSLLPYECR 132

Query: 119  LRNLTYSAPLYVDVTKR--------VIKKGHDGEE---VTETQDFTKV------------ 155
             RNLTYSAP+Y  V KR        V  K  D E+   +  T +  K+            
Sbjct: 133  DRNLTYSAPMYCRVMKRARVAINEEVPLKDMDEEQQEYMARTGEVPKIIRWEEEDTGPSE 192

Query: 156  ------------FIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLI 203
                        F+GK+P+M++S  C L+   E+ L  L ECPYDQGGYFIINGSEKVLI
Sbjct: 193  GAKGDDQKGDLIFLGKLPVMVKSQVCHLHGEDEESLFLLNECPYDQGGYFIINGSEKVLI 252

Query: 204  AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI 263
            AQE+ + N V VFKK      +Y AE+RS  E  +R  S++ +++ ++ S + G     +
Sbjct: 253  AQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHTKGSPEKGRLPNTV 312

Query: 264  RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQV 323
              TLPY+R ++ + IVFRALG V+D+DIL HICYD  DTQM+E LRP +EEAF IQ++++
Sbjct: 313  SVTLPYVREDVSLAIVFRALGIVSDEDILNHICYDRTDTQMLEALRPCIEEAFCIQDREI 372

Query: 324  ALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
            ALD+IGKRG    G  R  R++ AKE+LQKEMLPH+   + CET+KA++ GY++H+LL C
Sbjct: 373  ALDFIGKRGNGNAGQNRVNRVRAAKELLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQC 432

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
            ALGRR  DDRDH+G KRLDLAGPLL  LFR + R++T+D+ +Y+++C+D  K+ +L   I
Sbjct: 433  ALGRRDPDDRDHFGKKRLDLAGPLLAKLFRGVIRRMTQDLMSYMKRCIDTNKNFSLALGI 492

Query: 443  KAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501
            K  T+T+GLKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKL
Sbjct: 493  KHSTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKL 552

Query: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561
            AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VG+ A PI+EF+   G E  EE
Sbjct: 553  AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVEFMIARGMEVLEE 612

Query: 562  ISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 621
              P   P ATK+FVNG WVGIH+DP+ LV  ++ LRR+  ++ EV +VRDIR +E +I++
Sbjct: 613  YEPLQYPNATKVFVNGTWVGIHQDPKNLVSLVQGLRRKNVISFEVSLVRDIRDREFKIFS 672

Query: 622  DYGRCSRPLFIVEKQ----------RLLIKKRDIIALQQ-----RESPEDGGWHDLVAKG 666
            D GR  RPLF VE+            L++ K  I  L+      +  P+  GW  L+  G
Sbjct: 673  DAGRVMRPLFTVEQDPNSESGAEVGALILNKEHIARLEADKELGKYHPDYWGWPGLLKSG 732

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPE-EAYADT------------------YTHCE 707
             IEY+D EEEET MI MT  DL   R     E   DT                  YTHCE
Sbjct: 733  AIEYLDAEEEETVMICMTPEDLDNFRARKRGEVIEDTSGIGNNRIKTKPNPTTHMYTHCE 792

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS++LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKP
Sbjct: 793  IHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSKRMDTMANILYYPQKP 852

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D 
Sbjct: 853  LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDC 912

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EK++G  + E F +P+RS+T+ ++H +YDKLD DG+  PG RVSGED+IIGKT PI+ D 
Sbjct: 913  EKRVGINIVEKFEKPNRSDTLRLKHSTYDKLDADGIVAPGVRVSGEDIIIGKTCPINPDN 972

Query: 888  AQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
            A+ GQ ++++ +RD S  LR +E+G+VDQV++TTN DG+R+VKVRVR+ +IPQIGDKF+S
Sbjct: 973  AELGQRSAQHVKRDASTPLRSTESGIVDQVVVTTNQDGMRYVKVRVRTTKIPQIGDKFAS 1032

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EGITPD+I+NPHAIPSRMTI  LIEC++ KV+   G EG
Sbjct: 1033 RHGQKGTIGVTYRQEDMPFTCEGITPDLIINPHAIPSRMTIAHLIECLLSKVSTLKGMEG 1092

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFT+VTVD++S  L + GYQ RGFE +Y+GHTGR+L A +F GPTYYQRL+HMVDDK
Sbjct: 1093 DATPFTEVTVDSVSDLLREHGYQSRGFEVLYHGHTGRKLRAQVFFGPTYYQRLRHMVDDK 1152

Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHV 1125
            IH+R RGP+QI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVH+
Sbjct: 1153 IHARARGPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHI 1212

Query: 1126 CEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CE CGL+  IANL K SFECR CKNKT I QVH+PYA KLLFQELM+M IA RM T
Sbjct: 1213 CEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSMNIAARMFT 1268


>gi|320592188|gb|EFX04627.1| DNA-dependent RNA polymerase 2 rpb140 [Grosmannia clavigera kw1407]
          Length = 1266

 Score = 1457 bits (3772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 719/1245 (57%), Positives = 901/1245 (72%), Gaps = 83/1245 (6%)

Query: 16   EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
            E D +E IT ED+W +ISAYF++K LV QQ+DSF+EF   T+Q ++DE + + +    Q 
Sbjct: 17   EGDLDEGITPEDSWKIISAYFDKKSLVSQQIDSFNEFTTTTVQSLIDEHSLLTL---DQS 73

Query: 76   NPGQQSDFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT 133
            NP   SD    +  Y+I FG I +SKP   E DG  +TL P   R RNLTYS P+Y  +T
Sbjct: 74   NPPIASDRPVKLRRYEIKFGNIMVSKPQFAEGDGRVSTLTPYECRDRNLTYSCPIYARIT 133

Query: 134  KRVI--------KKGHDGEEVTETQ-------------------DFTK----------VF 156
            K+V             D E++ E Q                   D+ K          VF
Sbjct: 134  KKVSLAVDEPIPDDELDEEQIEEMQRTGEQPTRIVWEEEPSDLPDYEKDKADEDMKDMVF 193

Query: 157  IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF 216
            +G++PIM++S  C L    E  L  L ECPYDQGGYFIINGSEKVLIAQE+ + N V VF
Sbjct: 194  MGRLPIMVKSKICHLAYEDEDGLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVF 253

Query: 217  KKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPI 276
            KK QP+K++Y AE+RS  E  +R  S++ + ++++     GS GQ +  TLPYI++E+PI
Sbjct: 254  KKAQPSKFSYTAEIRSALEKGSRLISSLSIMLVAKGDTGRGSFGQTVHTTLPYIKSELPI 313

Query: 277  IIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATV- 335
             +VFRALG V+D+DIL HICYD  D+QM+E+LRP +EEAF IQ+++VALD+IGKRG    
Sbjct: 314  AVVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVALDFIGKRGQNSH 373

Query: 336  GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHY 395
            G++R  R++ A++ILQKEMLPH+   + CET+KA++ GY++H+LL CALGRR  DDRDH+
Sbjct: 374  GISRKDRVRAARDILQKEMLPHISQSEGCETRKAFFLGYMVHKLLQCALGRRDVDDRDHF 433

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAG LL  LFR + RK+ +++  ++++CVD GK  +L+  I+ +T+T+GLKYSL
Sbjct: 434  GKKRLDLAGSLLAKLFRGIIRKMYQELMNHLKRCVDTGKHFDLRVGIRHQTLTNGLKYSL 493

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  A  + AGVSQVLNR T++STLSHLRR N+PIGR+GKLAKPRQLHN+ WG+
Sbjct: 494  ATGNWGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGL 553

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNL+LM Y++VG+ A PI+EF+     E  EE  P   P ATKIF
Sbjct: 554  VCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVEFMIARNMEVLEEYEPLRYPNATKIF 613

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI-- 632
            VNG WVG+H+DP+ LV  ++ LRR+  + +EV +VRDIR +E +I++D GR  RPLF   
Sbjct: 614  VNGSWVGVHQDPKHLVSLVQGLRRKGVIQSEVSLVRDIRDREFKIFSDAGRVMRPLFAIE 673

Query: 633  --------VEKQRLLIKKRDIIALQ-----QRESPEDGGWHDLVAKGFIEYIDTEEEETT 679
                    VEK  L++ K  +  L       ++ P+  GW  +   G IEY+D EEEET 
Sbjct: 674  QEDNADSGVEKGMLVLTKEHVQRLDADEGLSKDDPKYFGWDGICDAGAIEYLDAEEEETA 733

Query: 680  MISMTINDLVQARLH------PEEAYAD---------------TYTHCEIHPSLILGVCA 718
            MI MT  DL   R+       P+E   +                YTHCEIHPS++LG+CA
Sbjct: 734  MICMTPEDLDNYRMQKAGYVLPDETNDEDINKRVKTKMNPTTHMYTHCEIHPSMLLGICA 793

Query: 719  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 778
            SIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A VLYYPQKPL TTR+ME+L 
Sbjct: 794  SIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYPRRMDTMANVLYYPQKPLATTRSMEYLK 853

Query: 779  FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 838
            FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D EK++G    E 
Sbjct: 854  FRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRAYTDSEKRVGINFVET 913

Query: 839  FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YT 896
            F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT+PI+ D  + GQ ++ + 
Sbjct: 914  FEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDHQEMGQRTQAHV 973

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            +RD S  LR +E+G++DQV++TTN D LR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+T
Sbjct: 974  KRDASTPLRSTESGIIDQVVVTTNQDNLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 1033

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y  EDMP+T EGI PDII+NPHAIPSRMTI  LIEC++ KVA   G EGDATPFTDVTVD
Sbjct: 1034 YRSEDMPFTTEGILPDIIINPHAIPSRMTIAHLIECLLSKVATLKGMEGDATPFTDVTVD 1093

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
            ++S  L + GYQ RGFE MY+GHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGPVQI
Sbjct: 1094 SVSGLLREHGYQSRGFEIMYHGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQI 1153

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IA 1135
            +TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDAYRVH+CE CGL+  IA
Sbjct: 1154 MTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAYRVHICEICGLMTPIA 1213

Query: 1136 NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            NL K SFECR CKNKT I QV IPYA KLLFQEL AM IA RM T
Sbjct: 1214 NLTKQSFECRPCKNKTRIAQVQIPYAAKLLFQELAAMNIAARMFT 1258


>gi|134110814|ref|XP_775871.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258537|gb|EAL21224.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1245

 Score = 1457 bits (3772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 717/1235 (58%), Positives = 903/1235 (73%), Gaps = 67/1235 (5%)

Query: 5    DYDYEEQH----QQEEE----DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNT 56
            DYDY +Q      ++EE    DE+E I+QED W VI+++FEEKGLVRQQL+SF+EFI+NT
Sbjct: 22   DYDYSQQTAPKGDEDEEKYDVDEDEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENT 81

Query: 57   MQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKA 116
            MQEIVD+ + + +   +Q+  G   D     Y+ISFGQIYL++   TE DG T  LFP+ 
Sbjct: 82   MQEIVDDHSRLTLDQFTQYT-GVAGDETRR-YEISFGQIYLARVNHTEMDGRTNMLFPQE 139

Query: 117  ARLRNLTYSAPLYVDVTKRVIKK---------------GHDGEEVTETQDFTKVFIGKVP 161
            ARLRNLTYSAPLYVD+ KR +                 G DGE   E  +  K  IGKVP
Sbjct: 140  ARLRNLTYSAPLYVDIKKRTLTASGVDDPVEADWQPAVGDDGE--VEGAEEEKTSIGKVP 197

Query: 162  IMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 221
            +M+RS++C L+   +    E+GECPYDQGGYFII+GSEKVLIAQE+M+TNHV+VF K  P
Sbjct: 198  VMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVFLKAAP 257

Query: 222  NKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFR 281
             ++ Y AE+ S  E   R  +   VRM +R S   G++G  IR +LPY + +IP+++VFR
Sbjct: 258  ARFTYFAEINSQKEKGGRVANHTEVRMYARAS---GTTGGVIRVSLPYTKVDIPLVVVFR 314

Query: 282  ALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDK 341
            ALG V D+D+L HIC+  +D  ++E+L+PS+EE+F +Q++  ALD+IG+RG      R +
Sbjct: 315  ALGIVPDRDVLSHICFGAEDEALLEMLQPSIEESFAVQDRDTALDFIGRRGQHEKAPRAQ 374

Query: 342  RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
            R + A +IL KE LPHV T +  E+KKAY+ GY++HRL + ALGR+  DDRDH+GNKRLD
Sbjct: 375  RQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYMVHRLCMAALGRKELDDRDHFGNKRLD 434

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
            LAGPL+  +F ++F KL  D+  Y++KCV+  K+  L  AI+  TIT GLKY+LATGNWG
Sbjct: 435  LAGPLMAEMFNVVFGKLREDMYRYLKKCVEQNKEFALNMAIRPNTITDGLKYALATGNWG 494

Query: 462  QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
            + +   TRAGVSQVLNR T+ASTLSHLRR N+PIGR+ K AKPRQLHN+ WGM+CPAETP
Sbjct: 495  KRD--NTRAGVSQVLNRYTFASTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETP 552

Query: 522  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
            EG ACGLVKNLALM YI+VGS + P++EFLEEWG E+  E   A  P ATK+FVNG W+G
Sbjct: 553  EGSACGLVKNLALMSYISVGSYSAPVMEFLEEWGLEDLSEYQDA--PTATKVFVNGVWMG 610

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLL 639
            IHRD   L   L ++RR   +  EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L 
Sbjct: 611  IHRDAPTLHNNLLQMRRGGQLKYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLR 670

Query: 640  IKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL---- 693
            +K+  I  + Q   E    G W  L+++G +EY+D  EEET +I+MT  DLV AR     
Sbjct: 671  LKRDHIDRIDQMADEGLLSGAWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSK 730

Query: 694  ---------HPEEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
                     H  E++           +  YTH EIHPS+ILGVCASI+PFPDHNQSPRNT
Sbjct: 731  HELVRDRAAHNLESFDPAARIKSTVWSQQYTHMEIHPSMILGVCASIVPFPDHNQSPRNT 790

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMG+ +TNYQ RMDT+  VLYYPQKPL TTR+ME+L F +LPAG NAIVAI 
Sbjct: 791  YQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIM 850

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSSIDRG FRSL+FRSY D EK  G +  E   +PDR+ T+ M+HG
Sbjct: 851  CYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHG 910

Query: 854  S---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 908
            +   Y KLD DGL  PGT V+G+D++IGKT P+ +D E  GQ ++ +T+RD S  L+ +E
Sbjct: 911  TGDRYAKLDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTE 970

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
             G+VDQV+L+TN +G  FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 971  QGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEG 1030

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            + PDII+NPHAIPSRMTIG L+EC++ KV+   G EGDATPFT++TV+ +SK L   GYQ
Sbjct: 1031 LVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEAVSKVLRAKGYQ 1090

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
             RGFE +Y+GHTGR+L A ++ GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRD
Sbjct: 1091 SRGFEVLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRD 1150

Query: 1089 GGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK 1148
            GGLRFGEMERDCMI+HG + FLKER++D SDA+R+HVC+ CGL+A+ANLKK  F C  C+
Sbjct: 1151 GGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCR 1210

Query: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKED 1183
            N T I QV+IPYA KLLFQEL AM IA RM  + D
Sbjct: 1211 NSTQISQVYIPYAAKLLFQELQAMNIACRMYGETD 1245


>gi|405120140|gb|AFR94911.1| DNA-directed RNA polymerase II large subunit [Cryptococcus neoformans
            var. grubii H99]
          Length = 1245

 Score = 1457 bits (3771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 716/1235 (57%), Positives = 903/1235 (73%), Gaps = 67/1235 (5%)

Query: 5    DYDYEEQ----HQQEEE----DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNT 56
            DYDY +Q    + ++EE    D++E I+QED W VI+++FEEKGLVRQQL+SF+EFI+NT
Sbjct: 22   DYDYTQQTAPKNDEDEEKYDVDDDEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENT 81

Query: 57   MQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKA 116
            MQEIVD+ + + +   +Q+  G   D     Y+ISFGQIYL++   TE DG T  LFP+ 
Sbjct: 82   MQEIVDDHSRLTLDQFTQYT-GVAGDETRR-YEISFGQIYLARVNHTEMDGRTNMLFPQE 139

Query: 117  ARLRNLTYSAPLYVDVTKRVIKK---------------GHDGEEVTETQDFTKVFIGKVP 161
            ARLRNLTYSAPLYVD+ KR +                 G DGE   E  +  K  IGKVP
Sbjct: 140  ARLRNLTYSAPLYVDIKKRTLTASGVDDPVEADWQPAVGDDGE--VEGAEEEKTSIGKVP 197

Query: 162  IMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 221
            +M+RS++C L+   +    E+GECPYDQGGYFII+GSEKVLIAQE+M+TNHV+VF K  P
Sbjct: 198  VMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVFLKAAP 257

Query: 222  NKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFR 281
             ++ Y AE+ S  E   R  +   VRM +R S   G++G  IR +LPY + +IP+++VFR
Sbjct: 258  ARFTYFAEINSQKEKGGRVANHTEVRMYARAS---GTTGGVIRVSLPYTKVDIPLVVVFR 314

Query: 282  ALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDK 341
            ALG V D+D+L HIC+  +D  ++E+L+PS+EE+F +Q++  ALD+IG+RG      R +
Sbjct: 315  ALGIVPDRDVLSHICFGAEDEALLEMLQPSIEESFAVQDRDTALDFIGRRGQHEKAPRAQ 374

Query: 342  RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
            R + A +IL KE LPHV T +  E+KKAY+ GY++HRL + ALGR+  DDRDH+GNKRLD
Sbjct: 375  RQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYMVHRLCMAALGRKELDDRDHFGNKRLD 434

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
            LAGPL+  +F ++F KL  D+  Y++KCV+  K+  L  AI+  TIT GLKY+LATGNWG
Sbjct: 435  LAGPLMAEMFNVVFGKLREDMYRYLKKCVEQNKEFALNMAIRPNTITDGLKYALATGNWG 494

Query: 462  QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
            + +   TRAGVSQVLNR T+ STLSHLRR N+PIGR+ K AKPRQLHN+ WGM+CPAETP
Sbjct: 495  KRD--NTRAGVSQVLNRYTFTSTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETP 552

Query: 522  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
            EG ACGLVKNLALM YI+VGS + P++EFLEEWG E+  E   A  P ATK+FVNG W+G
Sbjct: 553  EGSACGLVKNLALMSYISVGSYSAPVMEFLEEWGLEDLSEYQDA--PTATKVFVNGVWMG 610

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLL 639
            IHRD   L   L ++RR   +  EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L 
Sbjct: 611  IHRDAPTLHNNLLQMRRGGQLKYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLR 670

Query: 640  IKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL---- 693
            +K+  I  + Q   E    G W  L+++G +EY+D  EEET +I+MT  DLV AR     
Sbjct: 671  LKRDHIDRIDQMADEGLLSGAWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSK 730

Query: 694  ---------HPEEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
                     H  E++           +  YTH EIHPS+ILGVCASIIPFPDHNQSPRNT
Sbjct: 731  HELVRDRAAHNLESFDPAARIKSTVWSQQYTHMEIHPSMILGVCASIIPFPDHNQSPRNT 790

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMG+ +TNYQ RMDT+  VLYYPQKPL TTR+ME+L F +LPAG NAIVAI 
Sbjct: 791  YQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIM 850

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSSIDRG FRSL+FRSY D EK  G +  E   +PDR+ T+ M+HG
Sbjct: 851  CYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHG 910

Query: 854  S---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 908
            +   Y KLD DGL  PGT V+G+D++IGKT P+ +D E  GQ ++ +T+RD S  L+ +E
Sbjct: 911  TGDRYAKLDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTE 970

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
             G+VDQV+L+TN +G  FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 971  QGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEG 1030

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            + PDII+NPHAIPSRMTIG L+EC++ KV+   G EGDATPFT++TV+ +SK L   GYQ
Sbjct: 1031 LVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEAVSKVLRAKGYQ 1090

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
             RGFE +Y+GHTGR+L A ++ GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRD
Sbjct: 1091 SRGFELLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRD 1150

Query: 1089 GGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK 1148
            GGLRFGEMERDCMI+HG + FLKER++D SDA+R+HVC+ CGL+A+ANLKK  F C  C+
Sbjct: 1151 GGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCR 1210

Query: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKED 1183
            N T I QV+IPYA KLLFQEL AM IA RM  + D
Sbjct: 1211 NSTQISQVYIPYAAKLLFQELQAMNIACRMYGETD 1245


>gi|95115795|gb|ABF56192.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
 gi|95115797|gb|ABF56193.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score = 1456 bits (3770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 710/1246 (56%), Positives = 905/1246 (72%), Gaps = 80/1246 (6%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            EIT ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+  + +   + ++P + S
Sbjct: 19   EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 82   D-FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR----- 135
            D   +  Y+I FG++YL++P  TE DG T  LFP  ARLRNLTYS  +  D++ R     
Sbjct: 79   DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 136  ---VIKKGHDGE-EVTET-----------------QDFTKVFIGKVPIMLRSSYCTLYQN 174
               V+ +G D + EVT T                 ++  +VFIGK+P+MLRS  C L   
Sbjct: 139  ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198

Query: 175  SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 234
            S++ L    ECPYDQGGYF+INGSEKVLIAQE+ + N V VF+K+Q N   + AE+RS  
Sbjct: 199  SDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGN-VPWTAEIRSAV 257

Query: 235  ESQNRPPSTMFVRMLSRTSAKGG----SSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            E   R  S+  ++    +    G    + G +  A LPYI+TE+P+ IVFRALG V+D++
Sbjct: 258  EKGTRLISSFNIKWADNSLGGPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEE 317

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            IL HI YD  DTQM+ELL+PS+EE  VIQ+++ ALD+I KRGA  G TRD+R+K+A++I+
Sbjct: 318  ILSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIM 376

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            Q+E LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  L
Sbjct: 377  QREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANL 436

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FR+LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +
Sbjct: 437  FRILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAK 496

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLV
Sbjct: 497  AGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLV 556

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNL+LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + L
Sbjct: 557  KNLSLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQL 616

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKR 643
            V  ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R
Sbjct: 617  VSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDR 676

Query: 644  DI---IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDL 688
            +I   +  +Q +S    GW D            L+  G IEY+D EEEET MI+ +  DL
Sbjct: 677  EISNRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDL 736

Query: 689  VQ---------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +                      R+ P+ +     YTHCEIHP++ILG+CASIIPFPDH
Sbjct: 737  DEWRGMKMGLPTTERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDH 796

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG 
Sbjct: 797  NQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQ 856

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++
Sbjct: 857  NAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRAD 916

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISL 904
            T+ ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  L
Sbjct: 917  TLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPL 976

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+
Sbjct: 977  RSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPF 1036

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1024
            T EG+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L +
Sbjct: 1037 TSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQ 1096

Query: 1025 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1084
             GYQ RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EG
Sbjct: 1097 AGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEG 1156

Query: 1085 RSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFE 1143
            R+RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +E
Sbjct: 1157 RARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYE 1216

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKD 1189
            CR C NKT I Q+HIPYA KLLFQEL+AM IA RM T       +D
Sbjct: 1217 CRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRMFTDRSGLSVRD 1262


>gi|82621735|gb|ABB86549.1| second largest subunit of RNA polymerase II [Phaeosphaeria nodorum]
 gi|95115801|gb|ABF56195.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115803|gb|ABF56196.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115805|gb|ABF56197.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115807|gb|ABF56198.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115809|gb|ABF56199.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115811|gb|ABF56200.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
          Length = 1262

 Score = 1456 bits (3769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/1246 (56%), Positives = 904/1246 (72%), Gaps = 80/1246 (6%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            EIT ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+  + +   + ++P + S
Sbjct: 19   EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 82   D-FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR----- 135
            D   +  Y+I FG++YL++P  TE DG T  LFP  ARLRNLTYS  +  D++ R     
Sbjct: 79   DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 136  ---VIKKGHDGE-EVTET-----------------QDFTKVFIGKVPIMLRSSYCTLYQN 174
               V+ +G D + EVT T                 ++  +VFIGK+P+MLRS  C L   
Sbjct: 139  ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198

Query: 175  SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 234
            S++ L    ECPYDQGGYF+INGSEKVLIAQE+ + N V VF+K+Q N   + AE+RS  
Sbjct: 199  SDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGN-VPWTAEIRSAV 257

Query: 235  ESQNRPPSTMFVRMLSRTSAKGG----SSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            E   R  S+  ++    +    G    + G +  A LPYI+ E+P+ IVFRALG V+D++
Sbjct: 258  EKGTRLISSFNIKWADTSLGNPGQGKRAPGPFAYAMLPYIKQEVPMAIVFRALGIVSDEE 317

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            IL HI YD  DTQM+ELL+PS+EE  VIQ+++ ALD+I KRGA  G TRD+R+K+A++I+
Sbjct: 318  ILSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIM 376

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            Q+E LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  L
Sbjct: 377  QREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANL 436

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FR+LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +
Sbjct: 437  FRILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAK 496

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLV
Sbjct: 497  AGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLV 556

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNL+LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + L
Sbjct: 557  KNLSLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQL 616

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKR 643
            V  ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R
Sbjct: 617  VSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQLVFDR 676

Query: 644  DI---IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDL 688
            +I   +  +Q +S    GW D            L+  G IEY+D EEEET MI+ +  DL
Sbjct: 677  EISNRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDL 736

Query: 689  VQ---------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +                      R+ P+ +     YTHCEIHP++ILG+CASIIPFPDH
Sbjct: 737  DEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDH 796

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG 
Sbjct: 797  NQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQ 856

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++
Sbjct: 857  NAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRAD 916

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISL 904
            T+ ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  L
Sbjct: 917  TLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPL 976

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+
Sbjct: 977  RSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPF 1036

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1024
            T EG+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L +
Sbjct: 1037 TSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQ 1096

Query: 1025 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1084
             GYQ RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EG
Sbjct: 1097 AGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEG 1156

Query: 1085 RSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFE 1143
            R+RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +E
Sbjct: 1157 RARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYE 1216

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKD 1189
            CR C NKT I Q+HIPYA KLLFQEL+AM IA RM T       +D
Sbjct: 1217 CRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRMFTDRSGLSVRD 1262


>gi|95115793|gb|ABF56191.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score = 1454 bits (3765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/1246 (56%), Positives = 904/1246 (72%), Gaps = 80/1246 (6%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            EIT ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+  + +   + ++P + S
Sbjct: 19   EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 82   D-FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR----- 135
            D   +  Y+I FG++YL++P  TE DG T  LFP  ARLRNLTYS  +  D++ R     
Sbjct: 79   DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 136  ---VIKKGHDGE-EVTET-----------------QDFTKVFIGKVPIMLRSSYCTLYQN 174
               V+ +G D + EVT T                  +  +VFIGK+P+MLRS  C L   
Sbjct: 139  ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDDEAARVFIGKLPVMLRSELCHLRNQ 198

Query: 175  SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 234
            +++ L    ECPYDQGGYF+INGSEKVLIAQE+ + N V VF+K+Q     + AE+RS  
Sbjct: 199  TDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GPIPWTAEIRSAV 257

Query: 235  ESQNRPPSTMFVRMLSRTSAKGG----SSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            E   R  S+  ++    + A  G    + G +  A LPYI+TE+P+ IVFRALG V+D++
Sbjct: 258  EKGTRLISSFNIKWADNSLANPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEE 317

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            IL HI YD  DTQM+ELL+PS+EE  V+Q+++ ALD+I KRGA  G TRD+R+K+A++I+
Sbjct: 318  ILSHIVYDRTDTQMLELLKPSIEEGAVVQDRETALDFIAKRGANQG-TRDRRLKFARDIM 376

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            Q+E LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  L
Sbjct: 377  QREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANL 436

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FR+LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +
Sbjct: 437  FRILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAK 496

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLV
Sbjct: 497  AGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLV 556

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNL+LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + L
Sbjct: 557  KNLSLMCYVSVGSDATPIVDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSHAQQL 616

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKR 643
            V  ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R
Sbjct: 617  VSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDR 676

Query: 644  DI---IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDL 688
            +I   +  +Q +S    GW D            L+  G IEY+D EEEET MI+ +  DL
Sbjct: 677  EISNRLVKEQLDSDTRAGWSDTDIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDL 736

Query: 689  VQ---------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +                      R+ P+ +     YTHCEIHP++ILG+CASIIPFPDH
Sbjct: 737  DEWRGMKMGLPTNERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDH 796

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG 
Sbjct: 797  NQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQ 856

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++
Sbjct: 857  NAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRAD 916

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISL 904
            T+ ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  L
Sbjct: 917  TLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPL 976

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+
Sbjct: 977  RSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPF 1036

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1024
            T EG+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L +
Sbjct: 1037 TSEGLTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQ 1096

Query: 1025 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1084
             GYQ RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EG
Sbjct: 1097 AGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEG 1156

Query: 1085 RSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFE 1143
            R+RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +E
Sbjct: 1157 RARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYE 1216

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKD 1189
            CR C NKT I Q+HIPYA KLLFQEL+AM IA RM T       +D
Sbjct: 1217 CRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRMFTDRSGLSVRD 1262


>gi|95115813|gb|ABF56201.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115815|gb|ABF56202.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115817|gb|ABF56203.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115823|gb|ABF56206.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115825|gb|ABF56207.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
          Length = 1262

 Score = 1454 bits (3763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/1246 (56%), Positives = 903/1246 (72%), Gaps = 80/1246 (6%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            EIT ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+  + +   + ++P + S
Sbjct: 19   EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 82   D-FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR----- 135
            D   +  Y+I FG++YL++P  TE DG T  LFP  ARLRNLTYS  +  D++ R     
Sbjct: 79   DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 136  ---VIKKGHDGE-EVTET-----------------QDFTKVFIGKVPIMLRSSYCTLYQN 174
               V+ +G D + EVT T                 ++  +VFIGK+P+MLRS  C L   
Sbjct: 139  ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198

Query: 175  SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 234
            S++ L    ECPYDQGGYF+INGSEKVLIAQE+ + N V VF+K+Q     + AE+RS  
Sbjct: 199  SDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GSVPWTAEIRSAV 257

Query: 235  ESQNRPPSTMFVRMLSRTSAKGG----SSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            E   R  S+  ++    +    G    + G +  A LPYI+TE+P+ IVFRALG V+D++
Sbjct: 258  EKGTRLISSFNIKWSENSLGGPGQGRRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEE 317

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            IL HI YD  DTQM+ELL+PS+EE  VIQ+++ ALD+I KRGA  G TRD+R+K+A++I+
Sbjct: 318  ILSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIM 376

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            Q+E LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  L
Sbjct: 377  QREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANL 436

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FR+LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +
Sbjct: 437  FRILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAK 496

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLV
Sbjct: 497  AGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLV 556

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNL+LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + L
Sbjct: 557  KNLSLMCYVSVGSDASPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQL 616

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKR 643
            V  ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R
Sbjct: 617  VTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENSPSKPNRNQLVFDR 676

Query: 644  DI---IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDL 688
            DI   +  +Q +     GW D            L+  G IEY+D EEEET MI+ +  DL
Sbjct: 677  DISNRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDL 736

Query: 689  VQ---------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +                      R+ P+ +     YTHCEIHP++ILG+CASIIPFPDH
Sbjct: 737  DEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDH 796

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG 
Sbjct: 797  NQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQ 856

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++
Sbjct: 857  NAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRAD 916

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISL 904
            T+ ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  L
Sbjct: 917  TLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPL 976

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+
Sbjct: 977  RSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPF 1036

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1024
            T EG+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L +
Sbjct: 1037 TSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQ 1096

Query: 1025 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1084
             GYQ RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EG
Sbjct: 1097 AGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEG 1156

Query: 1085 RSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFE 1143
            R+RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +E
Sbjct: 1157 RARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYE 1216

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKD 1189
            CR C NKT I Q+HIPYA KLLFQEL+AM IA RM T       +D
Sbjct: 1217 CRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRMFTDRSGLSVRD 1262


>gi|95115819|gb|ABF56204.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115821|gb|ABF56205.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
          Length = 1262

 Score = 1453 bits (3762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/1246 (56%), Positives = 903/1246 (72%), Gaps = 80/1246 (6%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            EIT ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+  + +   + ++P + S
Sbjct: 19   EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 82   D-FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR----- 135
            D   +  Y+I FG++YL++P  TE DG T  LFP  ARLRNLTYS  +  D++ R     
Sbjct: 79   DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 136  ---VIKKGHDGE-EVTET-----------------QDFTKVFIGKVPIMLRSSYCTLYQN 174
               V+ +G D + EVT T                 ++  +VFIGK+P+MLRS  C L   
Sbjct: 139  ETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198

Query: 175  SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 234
            S++ L    ECPYDQGGYF+INGSEKVLIAQE+ + N V VF+K+Q     + AE+RS  
Sbjct: 199  SDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GSVPWTAEIRSAV 257

Query: 235  ESQNRPPSTMFVRMLSRTSAKGG----SSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            E   R  S+  ++    +    G    + G +  A LPYI+TE+P+ IVFRALG V+D++
Sbjct: 258  EKGTRLISSFNIKWSENSLGGPGQGRRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEE 317

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            IL HI YD  DTQM+ELL+PS+EE  VIQ+++ ALD+I KRGA  G TRD+R+K+A++I+
Sbjct: 318  ILSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIM 376

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            Q+E LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  L
Sbjct: 377  QREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANL 436

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FR+LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +
Sbjct: 437  FRILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAK 496

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLV
Sbjct: 497  AGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLV 556

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNL+LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + L
Sbjct: 557  KNLSLMCYVSVGSDASPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQL 616

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKR 643
            V  ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R
Sbjct: 617  VTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENSPSKPNRNQLVFDR 676

Query: 644  DI---IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDL 688
            DI   +  +Q +     GW D            L+  G IEY+D EEEET MI+ +  DL
Sbjct: 677  DISNRLVKEQLDHDTRAGWSDTDIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDL 736

Query: 689  VQ---------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +                      R+ P+ +     YTHCEIHP++ILG+CASIIPFPDH
Sbjct: 737  DEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDH 796

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG 
Sbjct: 797  NQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQ 856

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++
Sbjct: 857  NAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRAD 916

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISL 904
            T+ ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  L
Sbjct: 917  TLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPL 976

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+
Sbjct: 977  RSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPF 1036

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1024
            T EG+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L +
Sbjct: 1037 TSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQ 1096

Query: 1025 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1084
             GYQ RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EG
Sbjct: 1097 AGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEG 1156

Query: 1085 RSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFE 1143
            R+RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +E
Sbjct: 1157 RARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYE 1216

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKD 1189
            CR C NKT I Q+HIPYA KLLFQEL+AM IA RM T       +D
Sbjct: 1217 CRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRMFTDRSGLSVRD 1262


>gi|453086391|gb|EMF14433.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Mycosphaerella populorum SO2202]
          Length = 1260

 Score = 1453 bits (3762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 715/1243 (57%), Positives = 903/1243 (72%), Gaps = 79/1243 (6%)

Query: 13   QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
            ++EE  E+  IT ED W VI ++F  KGLV QQLDSFDEF   TMQEIVDE+  I I   
Sbjct: 14   EEEENFEDNTITAEDCWTVIHSFFSTKGLVSQQLDSFDEFASTTMQEIVDETPAIVIDQN 73

Query: 73   SQHNPGQQSD--FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
               +   +++    +  Y I  G + +S+  MTE DG T  + P  ARLRNLTYS+P+++
Sbjct: 74   VASDGDDETNMPIVKRRYIIELGMLTISQAAMTEGDGSTRQMHPHEARLRNLTYSSPMFI 133

Query: 131  DVTKRVIKK------GHDGEEVTETQD------FT-----------------KVFIGKVP 161
            ++ K+++        GH  E+ T   D      +T                 +VFIGK+P
Sbjct: 134  NMRKKMMLARERSIGGHLSEDGTHWIDPVGWDGYTTETVWEDDPDNPMEAKDQVFIGKLP 193

Query: 162  IMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 221
            IML+S  C L   SE++L    ECP+DQGGYFIINGSEKVLIAQE+ + N V VFKK+  
Sbjct: 194  IMLKSKICALRNRSEQELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKKKGT 253

Query: 222  NKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFR 281
            N    VAE+RS  E   R  S+M +R+ ++ SA+   SG+ IR T+PY++ +IPI IVFR
Sbjct: 254  NT-PVVAELRSAIEKGTRLISSMGIRLYNQ-SAQSAVSGKTIRVTVPYLKVDIPIGIVFR 311

Query: 282  ALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDK 341
            ALG V+D+DIL HI  D  DTQM+E+L+P LEEAFVIQ++ VALDYIG+RG   G T+DK
Sbjct: 312  ALGIVSDEDILNHIV-DKSDTQMLEMLKPCLEEAFVIQDKDVALDYIGRRGQQQG-TKDK 369

Query: 342  RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
            RI+YAKE++QKE LPH+   +  ETKKA++ GY+++R+L CALGR  EDDRDH+G KRLD
Sbjct: 370  RIRYAKEVMQKEFLPHISQEEGSETKKAFFLGYMVNRMLQCALGRTDEDDRDHFGKKRLD 429

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
            LAGPL+  +FR+ F++L ++++ Y+ +CV+ G++ N+  A+K   ITSGL+Y LATGNWG
Sbjct: 430  LAGPLMAQVFRLKFQQLVKEMKQYLHRCVETGREFNITLAVKTNIITSGLRYCLATGNWG 489

Query: 462  -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 520
             Q  A+ ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 490  DQKKASSSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 549

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNL+LM Y+TVG+   P+++F+ + G +  EE  P + P+ATKI +NG W+
Sbjct: 550  PEGQACGLVKNLSLMCYVTVGTPGTPLIDFMRQRGMDLLEEYDPVMNPKATKIMLNGTWI 609

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------ 634
            G+H +P  L + LR LRR+  ++ EV ++RD+R +E+R++TD GR  RPLF+V+      
Sbjct: 610  GVHHNPGHLAEVLRTLRRKDTISFEVTIIRDVRDREIRVFTDAGRVCRPLFVVDNDPKSS 669

Query: 635  -KQRLLIKKRDIIALQQRESPEDG--------------GWHDLVAKGFIEYIDTEEEETT 679
             +  L++ +  I  LQQ +    G              GW  L  +G +EY+D EEEET 
Sbjct: 670  NRGHLVLNQEHIGKLQQDQEILAGLEGVTEEERESSIYGWTGLTREGVVEYLDAEEEETA 729

Query: 680  MISMTINDLVQ------------ARLHPE-------EAYADTYTHCEIHPSLILGVCASI 720
            MISMT  DL +            AR  P         A   T+THCEIHP++ILG+CASI
Sbjct: 730  MISMTPEDLEEHRNMRQGIQWDDARDDPHRRIKPAPNASVRTWTHCEIHPAMILGICASI 789

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMG+ +TNY  RMDT+A VLYYPQKPL TTR+ME L FR
Sbjct: 790  IPFPDHNQSPRNTYQSAMGKQAMGVTLTNYNVRMDTMANVLYYPQKPLATTRSMEFLRFR 849

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
             LPAG NAIVAIA YSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D+EK++G  V E F 
Sbjct: 850  DLPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFFRAYMDQEKRVGMSVVEAFE 909

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRR 898
            +P RS+TM M+ GSYDKLDDDG+  PG RVSG+D+IIGKT P+  D E  GQ ++ + +R
Sbjct: 910  KPTRSDTMRMKQGSYDKLDDDGIVAPGARVSGDDIIIGKTAPMPPDAEELGQRTKLHVKR 969

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  LR +E G++DQVLLTTN +GLRFVKVR R  ++PQIGDKF+SRHGQKGT+G+TY 
Sbjct: 970  DVSTPLRSTENGLIDQVLLTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQKGTIGITYR 1029

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
            QEDMP++ +G+TPDII+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFTDVTV ++
Sbjct: 1030 QEDMPFSADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALQGQEGDATPFTDVTVTSV 1089

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
            S+ L   G+Q RGFE MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP+QILT
Sbjct: 1090 SQILAAAGFQQRGFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHARARGPLQILT 1149

Query: 1079 RQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANL 1137
            RQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERL D SDA+RVH+CE CGL+  IA++
Sbjct: 1150 RQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICEICGLMTPIASI 1209

Query: 1138 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            KK  FECR CKNKT I QV IPYA KLLFQEL AM +A RM T
Sbjct: 1210 KKQQFECRPCKNKTKIAQVIIPYAAKLLFQELAAMNVATRMFT 1252


>gi|95115791|gb|ABF56190.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score = 1452 bits (3760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 706/1236 (57%), Positives = 900/1236 (72%), Gaps = 80/1236 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            IT ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+  + +   + ++P + SD
Sbjct: 20   ITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSD 79

Query: 83   -FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR------ 135
               +  Y+I FG++YL++P  TE DG T  LFP  ARLRNLTYS  +  D++ R      
Sbjct: 80   PIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKE 139

Query: 136  --VIKKGHDGE-EVTET-----------------QDFTKVFIGKVPIMLRSSYCTLYQNS 175
              V+ +G D + EVT T                 ++  +VFIGK+P+MLRS  C L   S
Sbjct: 140  TQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQS 199

Query: 176  EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE 235
            ++ L    ECPYDQGGYF+INGSEKVLIAQE+ + N V VF+K+Q     + AE+RS  E
Sbjct: 200  DEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GSVPWTAEIRSAVE 258

Query: 236  SQNRPPSTMFVRMLSRTSAKGG----SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 291
               R  S+  ++    +    G    + G +  A LPYI+TE+P+ IVFRALG V+D++I
Sbjct: 259  KGTRLISSFNIKWSENSLGGSGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEI 318

Query: 292  LEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQ 351
            L HI YD  DTQM+ELL+PS+EE  VIQ+++ ALD+I KRGA  G TRD+R+K+A++I+Q
Sbjct: 319  LSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQ 377

Query: 352  KEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 411
            +E LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LF
Sbjct: 378  REFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLF 437

Query: 412  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 470
            R+LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +A
Sbjct: 438  RILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKA 497

Query: 471  GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 530
            GVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVK
Sbjct: 498  GVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVK 557

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590
            NL+LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + LV
Sbjct: 558  NLSLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLV 617

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRD 644
              ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R+
Sbjct: 618  SVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQLVFDRE 677

Query: 645  I---IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDLV 689
            I   +  +Q +     GW D            L+  G IEY+D EEEET MI+ +  DL 
Sbjct: 678  ISNRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLD 737

Query: 690  Q---------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHN 727
            +                      R+ P+ +     YTHCEIHP++ILG+CASIIPFPDHN
Sbjct: 738  EWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHN 797

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG N
Sbjct: 798  QSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQN 857

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T
Sbjct: 858  AIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADT 917

Query: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLR 905
            + ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR
Sbjct: 918  LRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLR 977

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
             +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 978  STENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFT 1037

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
             EG+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L + 
Sbjct: 1038 SEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQA 1097

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GYQ RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR
Sbjct: 1098 GYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGR 1157

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFEC 1144
            +RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +EC
Sbjct: 1158 ARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYEC 1217

Query: 1145 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            R C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1218 RPCHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1253


>gi|212545975|ref|XP_002153141.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
            18224]
 gi|210064661|gb|EEA18756.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
            18224]
          Length = 1254

 Score = 1452 bits (3758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 711/1227 (57%), Positives = 894/1227 (72%), Gaps = 69/1227 (5%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            IT ED W VIS+YF+ KGLV QQLDSFDEFI +TMQE+V+E   + I      N  +   
Sbjct: 20   ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTIDQTITPNEDEIDP 79

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK---- 138
                 Y+I +G I L++P  +E +G    L P  AR RNLTY++PLY++V +R+ +    
Sbjct: 80   VVIRRYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGRER 139

Query: 139  -------KGHDGEE---------------VTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 176
                   +G + EE               V   ++    +IG++PIML+S YC L   SE
Sbjct: 140  KAVDREGEGDENEEQKPGGTYLDWEEKPLVVSEEEAKGCYIGRIPIMLKSKYCLLRDLSE 199

Query: 177  KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAES 236
            + L    ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK  P+   Y+AE+RS  E 
Sbjct: 200  QSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYIAEIRSAVEK 259

Query: 237  QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC 296
             +R  S + +++ ++  +  G  G  IR++LPYI+T+IPI+IVFRALG V+D+DIL HIC
Sbjct: 260  GSRILSQLSLKLFAKGDSSKGGFGPTIRSSLPYIKTDIPIVIVFRALGVVSDEDILNHIC 319

Query: 297  YDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDKRIKYAKEILQKEML 355
            YD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++   ++ D+R++YA+EI+QKE L
Sbjct: 320  YDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSQTSMSHDRRVRYAREIMQKEFL 379

Query: 356  PHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 415
            PH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR LF
Sbjct: 380  PHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRTLF 439

Query: 416  RKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQ 474
             ++TRD+  YVQ+CV+  ++V L   +K  T+T GLKY+LATGNWG Q  A  ++AGVSQ
Sbjct: 440  TRVTRDLTRYVQRCVETNREVVLNVGLKPATLTGGLKYALATGNWGEQKKAMSSKAGVSQ 499

Query: 475  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 534
            VL+R T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLAL
Sbjct: 500  VLSRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLAL 559

Query: 535  MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 594
            M  ITVGS + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T++
Sbjct: 560  MCSITVGSPSEPIVDFMIQRNMEVLEEFEPLVTPHATKVFVNGVWVGVHRDPAHLVSTVQ 619

Query: 595  RLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIA 647
             LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++          L++ K  I  
Sbjct: 620  SLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPRSENCGSLVLNKDHIRR 679

Query: 648  LQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARLH- 694
            L+  RE P D           GW  LV  G IEY+D EEEET MI+M+  DL +  +L  
Sbjct: 680  LEADRELPPDLDPEERREQYYGWEGLVKSGVIEYVDAEEEETIMIAMSPEDLEISKQLQA 739

Query: 695  ----PEE-------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
                PE+               A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 740  GYTLPEDNNDPNKRVRSVLSQRAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 799

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSG
Sbjct: 800  MGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSG 859

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMNQSSIDRG FRSLF+R+Y + E+K+G    E F +P RS+T+GMR G+YDK
Sbjct: 860  YNQEDSVIMNQSSIDRGLFRSLFYRTYTEAERKLGLQTIEKFEKPMRSDTLGMRKGTYDK 919

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR-YTRRDHSISLRHSETGMVDQV 915
            ++DDGL  PG RV+GED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+VDQV
Sbjct: 920  IEDDGLVAPGVRVTGEDIIIGKTAPLAPESEELGQRTKAHTKVDVSTPLRATESGIVDQV 979

Query: 916  LLTTNAD-GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 974
            LLTT  D  LR VKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I
Sbjct: 980  LLTTGNDPDLRLVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLI 1039

Query: 975  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 1034
            +NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S+ L + GYQ RGFE 
Sbjct: 1040 INPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSVSRLLREHGYQSRGFEV 1099

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRFG
Sbjct: 1100 MYNGHTGKKLKAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFG 1159

Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDI 1153
            EMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR C NK  I
Sbjct: 1160 EMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRI 1219

Query: 1154 VQVHIPYACKLLFQELMAMAIAPRMLT 1180
             QVHIPYA KLLFQEL AM IA RM T
Sbjct: 1220 SQVHIPYAAKLLFQELAAMNIAARMFT 1246


>gi|449330210|gb|AGE96471.1| DNA-directed RNA polymerase II second largest subunit
            [Encephalitozoon cuniculi]
          Length = 1141

 Score = 1451 bits (3757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/1166 (59%), Positives = 884/1166 (75%), Gaps = 29/1166 (2%)

Query: 20   EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
            E   T+E +W++IS++FE+KGLVRQQLDSFD+F++  MQE+++ES  I ++         
Sbjct: 2    ESAFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAPTAGIET 61

Query: 80   QSDFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
            Q   A     + FGQIY+SKP + TESDG T T+FP  AR+R+LTY++PL++DVTK  + 
Sbjct: 62   QKRIA-----VRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLS 116

Query: 139  KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
            +      V +   +++V  G +P+MLRSSYC LY   +KDL +LGECPYDQGGYFI+NGS
Sbjct: 117  E----LGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGS 172

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKV++AQE+M++N VYVFKK QP  Y + AE+RS+ E  +R PST+        S K   
Sbjct: 173  EKVIVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTL--------SMKLCR 224

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
            S   IR +LP ++ ++P+ +++RALGF++DK+I++HI Y+  D +M ELL+ S+EE  V+
Sbjct: 225  SPGVIRVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVV 283

Query: 319  QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            Q+Q VALDYIGKR A +G  ++KRI  AK++L KE+LPH+GT +FCETKKAY+ GYI+ R
Sbjct: 284  QDQNVALDYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQR 343

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LLL ALGRR  DDRDHYG KR+DL+GPLL  LFR LF+KL  D   ++QKC++NG++ N+
Sbjct: 344  LLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGREFNI 403

Query: 439  QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
               +KA  IT G +Y+LATGNWG QA A  TRAGV+QVLNR  + STLSHLRR+N+PI +
Sbjct: 404  ALGLKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEK 463

Query: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
            EGKLA PRQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI+VGS++ P++EFLEE G E
Sbjct: 464  EGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLEECGVE 523

Query: 558  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
            + EEIS + +  ATKIFVNG WVGIH DP  L+K+L+ LRR ++++ EV +VRDIR KE+
Sbjct: 524  SLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEI 583

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            R+ +D GR  RPL +V+  +L+I   DI  L++ E      W +LV  GFIE++D EEEE
Sbjct: 584  RVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIK----WDNLVTSGFIEFLDVEEEE 639

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
             +MI+M    L     +  +    +YTHCEIHP+LILG+CAS IPFPDHNQSPRNTYQSA
Sbjct: 640  MSMIAMNTKILADESRNSSDVSV-SYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSA 698

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMGIY TN+  RMDTL+ +L+YPQKPLVTT++ME+L F++LP+G NA+VAIACYSG
Sbjct: 699  MGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSG 758

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDS+IMNQS+IDRG FRS F+R+Y D+E      V E+F +P R   + M++ +Y+K
Sbjct: 759  YNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLNYNK 818

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTTPISQDE-AQGQASRYTRRDHSISLRHSETGMVDQVL 916
            LDDDGL  PGTRV+G+DV+IGK TPI   E +  +A  Y  +D S ++R +ETG+VD V+
Sbjct: 819  LDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVI 878

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            +T N DG +F KV+VRS RIPQ+GDKF+SRH QKGT+G+T  QEDMP+T EGI PDII+N
Sbjct: 879  VT-NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIIN 937

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1036
            PHAIPSRMTIG LIEC++GKV+A  G+EGDATPF+ VTVD IS  L   G+Q RG E MY
Sbjct: 938  PHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFSGVTVDGISSRLKSYGFQQRGLEVMY 997

Query: 1037 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1096
            NG TGR+L A +F GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEM
Sbjct: 998  NGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1057

Query: 1097 ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQV 1156
            ERDC+I+HGAS FLKERL D SDAY  +VC+ CGL+A+   K N  EC+GC N T++  V
Sbjct: 1058 ERDCIISHGASAFLKERLMDVSDAYSCYVCDFCGLLAMGGSKVN--ECKGCNNTTNVSMV 1115

Query: 1157 HIPYACKLLFQELMAMAIAPRMLTKE 1182
             IPYA KLL QELM M IAPR+  +E
Sbjct: 1116 EIPYAFKLLIQELMGMNIAPRIRFEE 1141


>gi|19074634|ref|NP_586140.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
 gi|51702025|sp|Q8SR75.1|RPB2_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|19069276|emb|CAD25744.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
          Length = 1141

 Score = 1451 bits (3757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/1166 (59%), Positives = 884/1166 (75%), Gaps = 29/1166 (2%)

Query: 20   EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
            E   T+E +W++IS++FE+KGLVRQQLDSFD+F++  MQE+++ES  I ++         
Sbjct: 2    ESAFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAPTAGIET 61

Query: 80   QSDFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
            Q   A     + FGQIY+SKP + TESDG T T+FP  AR+R+LTY++PL++DVTK  + 
Sbjct: 62   QKRIA-----VRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLS 116

Query: 139  KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
            +      V +   +++V  G +P+MLRSSYC LY   +KDL +LGECPYDQGGYFI+NGS
Sbjct: 117  E----LGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGS 172

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKV++AQE+M++N VYVFKK QP  Y + AE+RS+ E  +R PST+        S K   
Sbjct: 173  EKVIVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTL--------SMKLCR 224

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
            S   IR +LP ++ ++P+ +++RALGF++DK+I++HI Y+  D +M ELL+ S+EE  V+
Sbjct: 225  SPGVIRVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVV 283

Query: 319  QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            Q+Q VALDYIGKR A +G  ++KRI  AK++L KE+LPH+GT +FCETKKAY+ GYI+ R
Sbjct: 284  QDQNVALDYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQR 343

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LLL ALGRR  DDRDHYG KR+DL+GPLL  LFR LF+KL  D   ++QKC++NG++ N+
Sbjct: 344  LLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGREFNI 403

Query: 439  QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
               +KA  IT G +Y+LATGNWG QA A  TRAGV+QVLNR  + STLSHLRR+N+PI +
Sbjct: 404  ALGLKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEK 463

Query: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
            EGKLA PRQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI+VGS++ P++EFLEE G E
Sbjct: 464  EGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVE 523

Query: 558  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
            + EEIS + +  ATKIFVNG WVGIH DP  L+K+L+ LRR ++++ EV +VRDIR KE+
Sbjct: 524  SLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEI 583

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            R+ +D GR  RPL +V+  +L+I   DI  L++ E      W +LV  GFIE++D EEEE
Sbjct: 584  RVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIK----WDNLVTSGFIEFLDVEEEE 639

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
             +MI+M    L     +  +    +YTHCEIHP+LILG+CAS IPFPDHNQSPRNTYQSA
Sbjct: 640  MSMIAMNTKILADESRNSSDVSV-SYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSA 698

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMGIY TN+  RMDTL+ +L+YPQKPLVTT++ME+L F++LP+G NA+VAIACYSG
Sbjct: 699  MGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSG 758

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDS+IMNQS+IDRG FRS F+R+Y D+E      V E+F +P R   + M++ +Y+K
Sbjct: 759  YNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLNYNK 818

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTTPISQDE-AQGQASRYTRRDHSISLRHSETGMVDQVL 916
            LDDDGL  PGTRV+G+DV+IGK TPI   E +  +A  Y  +D S ++R +ETG+VD V+
Sbjct: 819  LDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVI 878

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            +T N DG +F KV+VRS RIPQ+GDKF+SRH QKGT+G+T  QEDMP+T EGI PDII+N
Sbjct: 879  VT-NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIIN 937

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1036
            PHAIPSRMTIG LIEC++GKV+A  G+EGDATPF+ VTVD IS  L   G+Q RG E MY
Sbjct: 938  PHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFSGVTVDGISSRLKSYGFQQRGLEVMY 997

Query: 1037 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1096
            NG TGR+L A +F GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEM
Sbjct: 998  NGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1057

Query: 1097 ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQV 1156
            ERDC+I+HGAS FLKERL D SDAY  +VC+ CGL+A+   K N  EC+GC N T++  V
Sbjct: 1058 ERDCIISHGASAFLKERLMDVSDAYSCYVCDFCGLLAMGGSKVN--ECKGCNNTTNVSMV 1115

Query: 1157 HIPYACKLLFQELMAMAIAPRMLTKE 1182
             IPYA KLL QELM M IAPR+  +E
Sbjct: 1116 EIPYAFKLLIQELMGMNIAPRIRFEE 1141


>gi|95115799|gb|ABF56194.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
          Length = 1262

 Score = 1451 bits (3756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/1245 (56%), Positives = 902/1245 (72%), Gaps = 80/1245 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            IT ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+  + +   + ++P + SD
Sbjct: 20   ITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSD 79

Query: 83   -FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR------ 135
               +  Y+I FG++YL++P  TE DG T  LFP  ARLRNLTYS  +  D++ R      
Sbjct: 80   PIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKE 139

Query: 136  --VIKKGHDGE-EVTET-----------------QDFTKVFIGKVPIMLRSSYCTLYQNS 175
              V+ +G D + EVT T                 ++  +VFIGK+P+MLRS  C L   S
Sbjct: 140  TQVVVEGEDEDMEVTTTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQS 199

Query: 176  EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE 235
            ++ L    ECPYDQGGYF+INGSEKVLIAQE+ + N V VF+K+Q     + AE+RS  E
Sbjct: 200  DEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GSVPWTAEIRSAVE 258

Query: 236  SQNRPPSTMFVRMLSRTSAKGG----SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 291
               R  S+  ++    +    G    + G +  A LPYI+TE+P+ IVFRALG V+D++I
Sbjct: 259  KGTRLISSFNIKWSENSLGGSGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEI 318

Query: 292  LEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQ 351
            L HI YD  DTQM+ELL+PS+EE  VIQ+++ ALD+I KRGA  G TRD+R+K+A++I+Q
Sbjct: 319  LSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQ 377

Query: 352  KEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 411
            +E LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LF
Sbjct: 378  REFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLF 437

Query: 412  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 470
            R+LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +A
Sbjct: 438  RILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKA 497

Query: 471  GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 530
            GVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVK
Sbjct: 498  GVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVK 557

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590
            NL+LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + LV
Sbjct: 558  NLSLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLV 617

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRD 644
              ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R+
Sbjct: 618  SVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDRE 677

Query: 645  I---IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDLV 689
            I   +  +Q +     GW D            L+  G IEY+D EEEET MI+ +  DL 
Sbjct: 678  ISNRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLD 737

Query: 690  Q---------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHN 727
            +                      R+ P+ +     YTHCEIHP++ILG+CASIIPFPDHN
Sbjct: 738  EWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHN 797

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG N
Sbjct: 798  QSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQN 857

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T
Sbjct: 858  AIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADT 917

Query: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLR 905
            + ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR
Sbjct: 918  LRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLR 977

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
             +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 978  STENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFT 1037

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
             EG+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L + 
Sbjct: 1038 SEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQA 1097

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GYQ RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR
Sbjct: 1098 GYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGR 1157

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFEC 1144
            +RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +EC
Sbjct: 1158 ARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYEC 1217

Query: 1145 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKD 1189
            R C NKT I Q+HIPYA KLLFQEL+AM IA RM T       +D
Sbjct: 1218 RPCHNKTRISQIHIPYAAKLLFQELLAMNIATRMFTDRSGLSVRD 1262


>gi|95115789|gb|ABF56189.1| RNA polymerase II second largest subunit [Phaeosphaeria sp. S-93-48]
          Length = 1262

 Score = 1451 bits (3755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 706/1236 (57%), Positives = 900/1236 (72%), Gaps = 80/1236 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            IT ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+  + +   + ++P + SD
Sbjct: 20   ITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSD 79

Query: 83   -FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR------ 135
               +  Y+I FG++YL++P  TE DG T  LFP  ARLRNLTYS  +  D++ R      
Sbjct: 80   PIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKE 139

Query: 136  --VIKKGHDGE-EVTET-----------------QDFTKVFIGKVPIMLRSSYCTLYQNS 175
              V+ +G D + EVT T                 ++  +VFIGK+P+MLRS  C L   S
Sbjct: 140  TQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQS 199

Query: 176  EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE 235
            ++ L    ECPYDQGGYF+INGSEKVLIAQE+ + N V VF+K+Q N   + AE+RS  E
Sbjct: 200  DEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGN-VPWTAEIRSAVE 258

Query: 236  SQNRPPSTMFVRMLSRTSAKGG----SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 291
               R  S+  ++    +    G    + G +  A LPYI+TE+P+ IVFRALG V+D++I
Sbjct: 259  KGTRLISSFNIKWAENSLGGPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEI 318

Query: 292  LEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQ 351
            L HI YD  DTQM+ELL+PS+EE  VIQ+++ ALD+I KRGA  G TRD+R+K+A++I+Q
Sbjct: 319  LSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQ 377

Query: 352  KEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 411
            +E LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LF
Sbjct: 378  REFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLF 437

Query: 412  RMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRA 470
            R+LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +A
Sbjct: 438  RILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKA 497

Query: 471  GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 530
            GVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVK
Sbjct: 498  GVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVK 557

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590
            NL+LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + LV
Sbjct: 558  NLSLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLV 617

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRD 644
              ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R+
Sbjct: 618  SVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDRE 677

Query: 645  I---IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDLV 689
            I   +  +Q +     GW D            L+  G IEY+D EEEET MI+ +  DL 
Sbjct: 678  ISNRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLD 737

Query: 690  Q---------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHN 727
            +                      R+ P+ +     YTHCEIHP++ILG+CASIIPFPDHN
Sbjct: 738  EWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHN 797

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPR TYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG N
Sbjct: 798  QSPRKTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQN 857

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T
Sbjct: 858  AIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADT 917

Query: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLR 905
            + ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR
Sbjct: 918  LRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPLR 977

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
             +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 978  STENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFT 1037

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
             EG+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L + 
Sbjct: 1038 SEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQA 1097

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GYQ RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR
Sbjct: 1098 GYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGR 1157

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFEC 1144
            +RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +EC
Sbjct: 1158 ARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYEC 1217

Query: 1145 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            R C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1218 RPCHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1253


>gi|242824711|ref|XP_002488312.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
            10500]
 gi|218713233|gb|EED12658.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
            10500]
          Length = 1256

 Score = 1450 bits (3753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 712/1229 (57%), Positives = 893/1229 (72%), Gaps = 71/1229 (5%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            IT ED W VIS+YF+ KGLV QQLDSFDEFI +TMQE+V+E   + I      N  +   
Sbjct: 20   ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTIDQTITPNEDEIDP 79

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK--- 139
                 Y+I +G I L++P  +E +G    L P  AR RNLTY++PLY++V +R+ +    
Sbjct: 80   VVIRRYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGRER 139

Query: 140  ----------GHDGEE---------------VTETQDFTKVFIGKVPIMLRSSYCTLYQN 174
                      G + EE               V   ++    +IG++PIML+S YC L   
Sbjct: 140  KVADRDGEGLGDENEEQKPGGTYLEWEEKPLVISEEEAKGCYIGRIPIMLKSKYCLLRDL 199

Query: 175  SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 234
            SE+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK  P+   YVAE+RS  
Sbjct: 200  SEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAV 259

Query: 235  ESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 294
            E  +R  S + +++ ++  +  G  G  IR++LPYI+T+IPI+IVFRALG V+D+DIL H
Sbjct: 260  EKGSRILSQLSLKLFAKGDSSKGGFGPTIRSSLPYIKTDIPIVIVFRALGVVSDEDILNH 319

Query: 295  ICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDKRIKYAKEILQKE 353
            ICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++   ++ D+R++YA+EI+QKE
Sbjct: 320  ICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSQTSMSHDRRVRYAREIMQKE 379

Query: 354  MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413
             LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR 
Sbjct: 380  FLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRT 439

Query: 414  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 472
            LF ++TRD+  YVQ+CV+  ++V L   +K  T+T GLKY+LATGNWG Q  A  ++AGV
Sbjct: 440  LFTRVTRDLTRYVQRCVETNREVVLNVGLKPATLTGGLKYALATGNWGEQKKAMSSKAGV 499

Query: 473  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 532
            SQVL+R T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL
Sbjct: 500  SQVLSRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 559

Query: 533  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 592
            ALM  ITVGS + PI++F+ +   E  EE  P V P ATK+FVNG WVGIHRDP  LV T
Sbjct: 560  ALMCSITVGSPSEPIVDFMIQRNMEVLEEFEPLVTPHATKVFVNGVWVGIHRDPAHLVST 619

Query: 593  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDI 645
            ++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++          L++ K  I
Sbjct: 620  VQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPRSENCGSLVLNKDHI 679

Query: 646  IALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARL 693
              L+  RE P D           GW  LV  G IEY+D EEEET MI+M+  DL +  +L
Sbjct: 680  RRLEADRELPPDLDPEERREQYYGWEGLVKSGVIEYVDAEEEETIMIAMSPEDLEISKQL 739

Query: 694  H-----PEEAY-------------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
                  PE+               A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 740  QAGYAMPEDNSDPNKRVRSVLSQRAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 799

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACY
Sbjct: 800  SAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACY 859

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSSIDRG FRSLF+R+Y + E+K+G    E F +P RS+T+GMR G+Y
Sbjct: 860  SGYNQEDSVIMNQSSIDRGLFRSLFYRTYTEAERKLGLQTIEKFEKPMRSDTLGMRKGTY 919

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR-YTRRDHSISLRHSETGMVD 913
            DK++DDGL  PG RV+GED+IIGKT P++ + E  GQ ++ +T+ D S  LR +E+G+VD
Sbjct: 920  DKIEDDGLVAPGVRVTGEDIIIGKTAPLAPESEELGQRTKAHTKVDVSTPLRATESGIVD 979

Query: 914  QVLLTTNAD-GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            QVLLTT  D  LR VKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD
Sbjct: 980  QVLLTTGNDPDLRLVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVVPD 1039

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032
            +I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S+ L + GYQ RGF
Sbjct: 1040 LIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSVSRLLREHGYQSRGF 1099

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLR
Sbjct: 1100 EVMYNGHTGKKLKAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1159

Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKT 1151
            FGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+  IA LKK  FECR C NK 
Sbjct: 1160 FGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKH 1219

Query: 1152 DIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             I QVHIPYA KLLFQEL AM IA RM T
Sbjct: 1220 RISQVHIPYAAKLLFQELAAMNIAARMFT 1248


>gi|451846356|gb|EMD59666.1| hypothetical protein COCSADRAFT_252499 [Cochliobolus sativus ND90Pr]
          Length = 1262

 Score = 1450 bits (3753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 713/1265 (56%), Positives = 909/1265 (71%), Gaps = 80/1265 (6%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            M + Y+YE+     E++E++ +  ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV
Sbjct: 1    MAEPYEYEDGMDDYEDEEDDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIV 60

Query: 62   DESADIEIRPESQHNPGQQSD-FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
             E+  + +   + +NP +  +   +  Y+I FG++YL++P  TE DG T  L+P  ARLR
Sbjct: 61   KENGSVILEQNTPYNPDEDDNPIIKRRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLR 120

Query: 121  NLTYSAPLYVDVTKRVI--KKGHDGEEVTETQDF-------------------------T 153
            NLTYS  +  D+  R++  ++G D  E  E +D                           
Sbjct: 121  NLTYSGAMLADIENRIMVAREGRD-PEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAA 179

Query: 154  KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 213
            +VFIGK+P+MLRS  C L   S+ DL  L ECPYDQGGYF+INGSEKVLIAQE+ + N V
Sbjct: 180  RVFIGKLPVMLRSELCHLRAQSDADLFALNECPYDQGGYFVINGSEKVLIAQERSAANIV 239

Query: 214  YVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS--SGQYIRATLPYIR 271
             VF+K+Q     ++AE+RS  E   R  S+  ++    + A  G    G +  ATLPYI+
Sbjct: 240  QVFRKKQ-GPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGPGKRIPGPFAYATLPYIK 298

Query: 272  TEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKR 331
             ++P+ IVFRALG V+D++IL HI YD  DTQM+ELL+PS+EE  V+Q+++ ALD+I KR
Sbjct: 299  ADVPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEGSVVQDRETALDFIAKR 358

Query: 332  GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDD 391
            GA  G TRD+R+K+A++I+Q+E LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDD
Sbjct: 359  GANSG-TRDRRLKFARDIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDD 417

Query: 392  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGL 451
            RDH+G KRLDLAGPL+  LFR+LF KLT+DV  Y+Q+CV+N +D N+Q A+KA  IT+GL
Sbjct: 418  RDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQDFNVQMAVKASIITNGL 477

Query: 452  KYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS 510
            KYSLATGNWG Q  AA  +AGVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS
Sbjct: 478  KYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNS 537

Query: 511  QWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA 570
             WG++CPAETPEGQACGLVKNL+LM Y++VGS A PI++F+ +   +  EE      P A
Sbjct: 538  HWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDA 597

Query: 571  TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 630
            TK+FVNG WVG+H + + LV  ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPL
Sbjct: 598  TKVFVNGVWVGVHSNAQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPL 657

Query: 631  FIVE-------KQRLLIKK---RDIIALQQRESPEDG-----------GWHDLVAKGFIE 669
            F+VE       +  L+  K     + A QQ  S   G           GW  L+  G +E
Sbjct: 658  FVVENDIRKPNRNHLIFTKEISNKLKAEQQETSTRQGWSQEEVEQATYGWRGLIQDGVVE 717

Query: 670  YIDTEEEETTMISMTINDLVQ---------------------ARLHPE-EAYADTYTHCE 707
            Y+D EEEET MI+ +  DL +                      RL P+ +     YTHCE
Sbjct: 718  YLDAEEEETAMITFSPEDLEEWREMKMGLPAAERSTEGKDRLRRLKPQPDPRIHAYTHCE 777

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TN+  RM+T+  VLYYPQKP
Sbjct: 778  IHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKP 837

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME+L FR+LPAG NAIVAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++
Sbjct: 838  LATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQ 897

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 886
            EK++G  V E F +P R++T+ ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D 
Sbjct: 898  EKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADA 957

Query: 887  -EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
             E   + + +T+RD S  LR +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+S
Sbjct: 958  QELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFAS 1017

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EG+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EG
Sbjct: 1018 RHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEG 1077

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFTDVTVD IS+ L   GYQ RGFE MYNGHTG++L   IFLGPTYYQRL+HMVDDK
Sbjct: 1078 DATPFTDVTVDQISQLLEDAGYQKRGFEIMYNGHTGKKLRTQIFLGPTYYQRLRHMVDDK 1137

Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHV 1125
            IH+R RGP+QILTRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHV
Sbjct: 1138 IHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHV 1197

Query: 1126 CEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDT 1184
            C+ CGL++ IA LKK  +ECR C NKT I Q+HIPYA KLLFQEL+AM IA RM T    
Sbjct: 1198 CDICGLMSPIAQLKKGLYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRMFTDRSG 1257

Query: 1185 KQSKD 1189
               +D
Sbjct: 1258 LSVRD 1262


>gi|320166143|gb|EFW43042.1| DNA-directed RNA polymerase II subunit RPB2 [Capsaspora owczarzaki
            ATCC 30864]
          Length = 1729

 Score = 1449 bits (3750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 705/1130 (62%), Positives = 860/1130 (76%), Gaps = 31/1130 (2%)

Query: 2    MEDDYDYEEQ-----------HQQEEEDEEEE-ITQEDAWAVISAYFEEKGLVRQQLDSF 49
            M DDY Y+E            HQQ   +E EE ITQED W VI ++F+ KGLVRQQLDSF
Sbjct: 1    MYDDY-YDENIEVRSEPEHHVHQQSHAEEYEEVITQEDTWVVIRSFFKNKGLVRQQLDSF 59

Query: 50   DEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGET 109
            D+FI  T+ E++ E   +E++ E Q       + A   Y +SF  I++S P +TESDG  
Sbjct: 60   DDFISLTIPELISEQGTLELKVERQFL--DADEVAPPRYVVSFDNIFISHPTITESDGYN 117

Query: 110  ATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDG-EEVTETQDFTKVFIGKVPIMLRSSY 168
              LFP  ARLRNLTY+  LYV++ + + +   +G EE  E +   KV++G++P+MLRS  
Sbjct: 118  HALFPNEARLRNLTYACRLYVNLKREMFRYDENGVEEPPEVKILDKVYLGQIPMMLRSKN 177

Query: 169  CTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 228
            C L+   + +L ++ ECPYDQGGYF+INGSEKVLIAQE+M+ N+VYVF ++ P KY+YVA
Sbjct: 178  CALFNKKDYELEKMNECPYDQGGYFVINGSEKVLIAQERMANNNVYVFHRKPPAKYSYVA 237

Query: 229  EVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVAD 288
            E+RS  E+ +RP +T++ +ML+R  +KG S+G  I+ TLPYI+T+IPI++VFRALGFV+D
Sbjct: 238  EIRSALETGHRPANTLYTKMLTRGQSKGESAGNRIQCTLPYIKTDIPIVVVFRALGFVSD 297

Query: 289  KDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKE 348
            +D+L+H+ YD+QD +MME+LR SLEEA  IQ Q VALD+IGKRG   G TR+ RI+YAKE
Sbjct: 298  RDVLDHVIYDYQDQEMMEMLRFSLEEALPIQEQPVALDFIGKRGLVQGATRENRIRYAKE 357

Query: 349  ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG 408
            ILQKE+LPHVG  D  ETKKAY+FGYI+HRLL  ALGRR  DDRDHYGNKR DLAG L+G
Sbjct: 358  ILQKELLPHVGVTDHSETKKAYFFGYIVHRLLQAALGRRELDDRDHYGNKRCDLAGALVG 417

Query: 409  GLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG- 467
            GLFR+LFRKL +DV+A +QK VD   + NL  A KAK I+ GL+YSLATGNWG A  A  
Sbjct: 418  GLFRLLFRKLIKDVKASLQKDVDKRHEFNLLAAFKAKIISDGLRYSLATGNWGDAKKAHE 477

Query: 468  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
            +RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL N+QWG+MCPAETPEGQACG
Sbjct: 478  SRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLQNTQWGVMCPAETPEGQACG 537

Query: 528  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
            LVKNLALM YI+VGS A  I+EFLEEW TEN EE +P  I Q+TKIFVNGCWVGIH    
Sbjct: 538  LVKNLALMAYISVGSPALHIIEFLEEWATENLEETTPQSILQSTKIFVNGCWVGIHAQAN 597

Query: 588  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
             LV+TL +LR+R D++ E+ +V DIR +ELRIY+D GR  RPLF+VE +RL I++  I A
Sbjct: 598  ELVRTLAQLRQRTDISPEISIVPDIRERELRIYSDAGRAMRPLFVVEDERLSIRREHIDA 657

Query: 648  LQQRESPEDGG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 699
            L+Q    +  G        W +L+  G IEYIDT+EEET MI+M   DL  AR     AY
Sbjct: 658  LKQAAQADRAGEHIDNPMRWPELITTGVIEYIDTQEEETRMIAMHPEDLDYARREGRGAY 717

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
              T+THCEI+P++ILGVCASIIPFPDHNQSPRN YQSAMGKQAMG+Y++N+Q R+DT+++
Sbjct: 718  CSTHTHCEINPAMILGVCASIIPFPDHNQSPRNCYQSAMGKQAMGVYISNFQVRLDTMSH 777

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
             LYYPQKPL TTR+ME+LHF  LPAG+NAIVAI+ YSGYNQEDSV+MNQS+IDRG FRSL
Sbjct: 778  TLYYPQKPLTTTRSMEYLHFDSLPAGMNAIVAISVYSGYNQEDSVVMNQSAIDRGLFRSL 837

Query: 820  FFRSYRDEEKKMGTLV-KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            F+RSY+DE K  G  V  E+F +P      GMRH SYDKLD DGL  PGTRVSG+D IIG
Sbjct: 838  FYRSYKDEVKPAGLDVGDEEFEKPSLEIVAGMRHSSYDKLDADGLVAPGTRVSGDDFIIG 897

Query: 879  KTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 936
            KTTPI   ++E      RY +RD S +LR +E G+VD V+L+ N DG RFVKVRVR +RI
Sbjct: 898  KTTPIPDEKNELAQTMKRYRKRDASTALRSTENGIVDTVMLSVNEDGHRFVKVRVRGIRI 957

Query: 937  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 996
            PQIGDKF+SRHGQKGT G+TY QEDMP+  EGITPDII+NPHAIPSRMTIG LIEC+ GK
Sbjct: 958  PQIGDKFASRHGQKGTCGITYRQEDMPYNAEGITPDIIINPHAIPSRMTIGHLIECLQGK 1017

Query: 997  VAAHMGKEGDATPF-TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            VAA  GK GDATPF TDVTV +I+  L +  Y   G E ++NGHTG+++   ++ GPTYY
Sbjct: 1018 VAALTGKIGDATPFNTDVTVKSIADLLKEFRYHPYGNEVLFNGHTGKKMNTQVYFGPTYY 1077

Query: 1056 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 1105
            QRLKHMVDDKIHSR RGP+  LTRQP EGR+RDGGLRFGEMERDC+  HG
Sbjct: 1078 QRLKHMVDDKIHSRQRGPLTNLTRQPVEGRARDGGLRFGEMERDCL--HG 1125



 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 72/83 (86%)

Query: 1099 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 1158
            +CMIAHGA+ FL+ERLF+QSD  RVHVC+ CGLIAIANLKKN FECR C+NKT I Q+ +
Sbjct: 1639 NCMIAHGAAQFLRERLFEQSDFSRVHVCDICGLIAIANLKKNEFECRACRNKTQISQIFL 1698

Query: 1159 PYACKLLFQELMAMAIAPRMLTK 1181
            PYA KLLFQELM+M+IAPR++ +
Sbjct: 1699 PYAAKLLFQELMSMSIAPRLMPR 1721


>gi|303390954|ref|XP_003073707.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303302855|gb|ADM12347.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1140

 Score = 1448 bits (3749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/1162 (59%), Positives = 886/1162 (76%), Gaps = 30/1162 (2%)

Query: 24   TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDF 83
            T+E +W +IS++FE+KGLVRQQLDSFD+F++  MQE++DES  I +    Q  P    + 
Sbjct: 6    TKEHSWLIISSFFEQKGLVRQQLDSFDQFVKTKMQEVIDESPAIIV----QSAPTAGIET 61

Query: 84   AETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
             + I  + FGQIY+SKP + TESDG T T+FP  AR+R+LTY++PL++DVTK  I +   
Sbjct: 62   QKRI-TVRFGQIYVSKPPIYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETISELG- 119

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
               V +   +++V  G +P+MLRSSYC LY  S+KDL +LGECPYDQGGYFI+NGSEKV+
Sbjct: 120  ---VVDKHKYSRVPFGSLPVMLRSSYCVLYGLSDKDLIDLGECPYDQGGYFIVNGSEKVI 176

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            +AQE+M++N VYVFKK QP  Y + AE+RS+ E  +R PST+        S K   S   
Sbjct: 177  VAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTL--------SMKLCRSPGV 228

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
            IR +LP ++ +IP+ +++RALGF++DK+I++HI Y+  D +M ELL+ S+EE  V+Q+Q 
Sbjct: 229  IRVSLPLVKQDIPLFVLYRALGFLSDKEIIDHILYE-DDDEMFELLKESIEEGMVVQDQN 287

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
            VALDYIGKR A VG  ++KRI  AK++L KE+LPH+GT +FCETKKAY+ GYI+ RLLL 
Sbjct: 288  VALDYIGKRSAPVGTPQEKRIIIAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLV 347

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
            ALGR+  DDRDHYG KR+DL+GPLL  LFR LF+KL  D   ++QKC++NG++ N+   +
Sbjct: 348  ALGRKNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTTRHMQKCIENGREFNIALGL 407

Query: 443  KAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501
            KA  IT G +Y+LATGNWG QA A  TRAGV+QVLNR  + STLSHLRR+N+PI +EGKL
Sbjct: 408  KASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKL 467

Query: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561
            A PRQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI+VGS++ P++EFLEE G E+ EE
Sbjct: 468  AAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEE 527

Query: 562  ISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 621
            IS   +  ATKIFVNG WVGIH DP  L+K+L+ LRR ++++ EV +VRDIR KE+RI +
Sbjct: 528  ISTPQLNAATKIFVNGIWVGIHSDPVYLIKSLKLLRRSLEMDKEVSIVRDIREKEIRIQS 587

Query: 622  DYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMI 681
            D GR  RPL +V+   L+I   DI  L++ E      W +L+++GFIE++D EEEE +MI
Sbjct: 588  DAGRPCRPLLVVKNNELVITPEDIKRLKRGEIK----WDNLISEGFIEFLDVEEEEMSMI 643

Query: 682  SMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741
            +M    L +++   +     +YTHCEIHP+LILG+CAS IPFPDHNQSPRNTYQSAMGKQ
Sbjct: 644  AMNTKALEESKKASDVKI--SYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGKQ 701

Query: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801
            AMGIY TN+  RMDTL+ +L+YPQKPLVTT++ME+L F++LP+G NA+VAIACYSGYNQE
Sbjct: 702  AMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQE 761

Query: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 861
            DS+IMNQS+IDRG FRS F+R+Y D+E      V E+F +P R   + M++ +Y+KLD+D
Sbjct: 762  DSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGTVLRMKNLNYNKLDED 821

Query: 862  GLAPPGTRVSGEDVIIGKTTPISQDE-AQGQASRYTRRDHSISLRHSETGMVDQVLLTTN 920
            GL  PGTRV+G+DV+IGK TPI   E +  +A  Y  +D S ++R +ETG+VD V++T N
Sbjct: 822  GLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIVT-N 880

Query: 921  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
             DG +F K++VRS RIPQ+GDKF+SRH QKGT+G+T  QEDMP+T +GI PDII+NPHAI
Sbjct: 881  KDGYKFSKIKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIINPHAI 940

Query: 981  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1040
            PSRMTIG LIEC++GKV+A  G+EGDATPF+D+TV+ IS  L   G+Q RG E MYNG T
Sbjct: 941  PSRMTIGHLIECLLGKVSAMSGEEGDATPFSDMTVNEISAKLKSYGFQQRGLEVMYNGMT 1000

Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
            GR+L A +F GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1001 GRKLRAQVFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDC 1060

Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPY 1160
            +I+HGAS FLKERL D SDAY   VC  CGL+A+   K N  EC+GC N T++  + IPY
Sbjct: 1061 IISHGASAFLKERLMDVSDAYSCFVCNFCGLLAMGGSKVN--ECKGCNNTTNVSMIEIPY 1118

Query: 1161 ACKLLFQELMAMAIAPRMLTKE 1182
            A KLL QELM M IAPR+  +E
Sbjct: 1119 AFKLLVQELMGMNIAPRIRFEE 1140


>gi|340939429|gb|EGS20051.1| RNA polymerase-like protein [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1286

 Score = 1446 bits (3744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 720/1239 (58%), Positives = 889/1239 (71%), Gaps = 84/1239 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS- 81
            IT ED W VISAYF++ GLV QQ+DSF+EF Q+T+Q +V+E A + +      NPG    
Sbjct: 43   ITPEDCWEVISAYFDKNGLVSQQIDSFNEFTQSTIQSLVNEYAHLTL---DHPNPGDDEG 99

Query: 82   -DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR----- 135
             D A   Y I F  + LSKP +TE+ GET  L P   R RNLTYSAP+Y  VTKR     
Sbjct: 100  RDIAMRRYDIHFQDVLLSKPTLTETTGETTFLLPYECRDRNLTYSAPMYCKVTKRARIAI 159

Query: 136  ----------------VIKKGH-------------------DGEEVTETQDFTKVFIGKV 160
                            + K G                    DG    +      +F+GK+
Sbjct: 160  NEPIPYHELDDEQREHLAKTGEHPTTIRWEEEDTGPREAPRDGPLKGDKDKADYIFLGKL 219

Query: 161  PIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 220
            PIM++S  C LY   +  L  L ECPYDQGGYFIINGSEKVLIAQE+ + N V +FKK  
Sbjct: 220  PIMVKSKVCHLYGEDDDSLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQIFKKPP 279

Query: 221  PNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 280
                AYVAE+RS  E  +R  S++ +++ ++ S + G     +  TLPY+R +I + IVF
Sbjct: 280  GGSVAYVAEIRSALEKGSRLISSLQMKLHTKASPEKGRLANTVSVTLPYVREDISLAIVF 339

Query: 281  RALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRG-ATVGVTR 339
            RALG V+D+DIL HICYD  DTQM+E LRP +EEAF IQ+++VALD+IGKRG    G  R
Sbjct: 340  RALGVVSDEDILNHICYDRTDTQMLEALRPCIEEAFCIQDREVALDFIGKRGNGNAGQNR 399

Query: 340  DKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKR 399
              RI+ AK++LQKEMLPH+   + CET+KA++ GY++H+LL CALGRR  DDRDH+G KR
Sbjct: 400  VNRIRAAKDLLQKEMLPHISQSEGCETRKAFFLGYMVHKLLQCALGRRDPDDRDHFGKKR 459

Query: 400  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 459
            LDLAGPLL  LFR + R++T+D+ +Y+++C+D  K+ +L   IK  T+T+ LKYSLATGN
Sbjct: 460  LDLAGPLLAKLFRGVIRRMTQDLMSYMKRCIDTNKNFSLALGIKHSTLTNALKYSLATGN 519

Query: 460  WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
            WG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPA
Sbjct: 520  WGEQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPA 579

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNL+LM Y++VG+ A PI+EF+     E  EE  P   P ATK+FVNG 
Sbjct: 580  ETPEGQACGLVKNLSLMCYVSVGTPAEPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGT 639

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE---- 634
            WVG+H+DP+ LV  ++ LRR+  +N EV +VRDIR +E +I++D GR  RPLF VE    
Sbjct: 640  WVGVHQDPKHLVSLVQGLRRKNIINFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQEDN 699

Query: 635  ------KQRLLIKKRDIIALQQ-----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISM 683
                  K +LL+KK  I  L++     +  P+  GW  L+  G +EY+D EEEET MI M
Sbjct: 700  GENGVEKGQLLLKKEHIARLERDKELGKYHPDYWGWDGLLKSGAVEYLDAEEEETAMICM 759

Query: 684  TINDLVQARL-------HPEEAYADT------------YTHCEIHPSLILGVCASIIPFP 724
            T  DL   RL       H      +             YTHCEIHPS++LGVCASIIPFP
Sbjct: 760  TPEDLDMYRLTKLGFQVHDNSGVGNNRIRTKMNMTTHAYTHCEIHPSMLLGVCASIIPFP 819

Query: 725  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
            DHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 820  DHNQSPRNTYQSAMGKQAMGFFLTNYSHRMDTMANILYYPQKPLATTRSMEFLKFRELPA 879

Query: 785  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 844
            G NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  + E F +P+R
Sbjct: 880  GQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINIVEMFEKPNR 939

Query: 845  SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ--GQASRYTRRDHSI 902
            + T+ M+H +YDKLD DG+  PGTRVSG+D+IIGKT PI+ + A+   + +++ +RD S 
Sbjct: 940  TETLRMKHSTYDKLDADGIVAPGTRVSGDDIIIGKTCPINPENAELGSRTAQHVKRDVST 999

Query: 903  SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
            +LR +E G+VD V+LTTN DG+R+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 1000 ALRSTENGIVDSVILTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDM 1059

Query: 963  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1022
            P+T EGITPDII+NPHAIPSRMTI  LIEC++ KV+   G EGDATPFT+VTVD++S  L
Sbjct: 1060 PFTCEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTEVTVDSVSALL 1119

Query: 1023 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1082
             + GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGP+QI+TRQP 
Sbjct: 1120 REHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPV 1179

Query: 1083 EGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNS 1141
            EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K S
Sbjct: 1180 EGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLTKQS 1239

Query: 1142 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            FECR CKNKT I QVHIPYA KLLFQELMAM IA RM T
Sbjct: 1240 FECRPCKNKTKIAQVHIPYAAKLLFQELMAMNIAARMFT 1278


>gi|452982910|gb|EME82668.1| hypothetical protein MYCFIDRAFT_136855 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1248

 Score = 1445 bits (3741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 717/1256 (57%), Positives = 914/1256 (72%), Gaps = 92/1256 (7%)

Query: 1    MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            M EDDYD   Q           IT ED W+VI ++F+ KGLV QQLDSFDEF   TMQEI
Sbjct: 1    MAEDDYDEGNQI----------ITAEDCWSVIHSFFDSKGLVSQQLDSFDEFASTTMQEI 50

Query: 61   VDESADIEI--RPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 118
            VDE+  I I     +  + G      +  Y I  G + +S+  MTE DG T  ++P  AR
Sbjct: 51   VDETPAIVIDQNVAADDDDGLNMPIVKRRYIIELGVLTISQAAMTEGDGSTRAMYPHEAR 110

Query: 119  LRNLTYSAPLYVDVTKRVI---------KKGHDG---------------------EEVTE 148
            LRNLTYS+P+++++TKR+          + G +G                     +   E
Sbjct: 111  LRNLTYSSPMFLNLTKRMQLARERSAGGQMGENGVWIDPPNWDGVTVDTIWEEDPDNPPE 170

Query: 149  TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
            T+D  +VFIGK+PIML+S  C L   SE++L    ECP+DQGGYFIINGSEKVLIAQE+ 
Sbjct: 171  TKD--QVFIGKLPIMLKSKICALRNRSEQELYAQQECPFDQGGYFIINGSEKVLIAQERS 228

Query: 209  STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLP 268
            + N V VFKK+       VAE+RS  E   R  S+M V+++++ +A   ++G+ I+ ++P
Sbjct: 229  AANIVQVFKKKG-TPTPVVAELRSAIEKGTRLISSMQVKLVNQ-AAHSNATGKTIKVSVP 286

Query: 269  YIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYI 328
            YI+ +IPI IVFRALG V+D+DIL HI  D +DTQM+E+L+P LEEAFVIQ++  ALD+I
Sbjct: 287  YIKVDIPIGIVFRALGIVSDEDILNHIV-DRKDTQMLEMLKPCLEEAFVIQDRDGALDFI 345

Query: 329  GKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRA 388
            GKRG   GV +++RI+YA+EI+QKE LPH+   +  ET+KA++ GY+++RLL CALGR +
Sbjct: 346  GKRGNQQGV-KERRIRYAREIMQKEFLPHISQEEGSETRKAFFLGYMVNRLLQCALGRTS 404

Query: 389  EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 448
            EDDRDH+G KRLDLAGPL+  +FR+ F++L ++++ Y+ +CV+ G++ N+  A+K   IT
Sbjct: 405  EDDRDHFGKKRLDLAGPLMAQVFRLKFQQLVKEMKQYLHRCVETGREFNITLAVKTNIIT 464

Query: 449  SGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507
            SGL+Y LATGNWG Q  A+ ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQL
Sbjct: 465  SGLRYCLATGNWGDQKKASQSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQL 524

Query: 508  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567
            HN+ WG++CPAETPEGQACGLVKNL+LM Y+TVG+  +P+++F+ + G +  EE  P + 
Sbjct: 525  HNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGTPGFPLIDFMRQRGMDLLEEYDPVIN 584

Query: 568  PQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 627
            P ATK+F+NG WVG+HR+   L  TLR LRR+  ++ EV ++RD+R +E+R++TD GR  
Sbjct: 585  PGATKVFLNGTWVGVHRNAGHLADTLRSLRRKGLLSFEVTIIRDVREREIRVFTDAGRVC 644

Query: 628  RPLFIVE--------KQRLLIKKRDIIALQQRE---------SPEDG-----GWHDLVAK 665
            RPLF+V+        K  L++ +  +  L + +         S E+      GW  LV  
Sbjct: 645  RPLFVVDNRTEAPNNKGSLVLDQTHLAKLAEDQDMLQNLEGVSEEEREKHIFGWKGLVDG 704

Query: 666  GFIEYIDTEEEETTMISMTINDLVQARL----HPEEAYAD--------------TYTHCE 707
            G +EY+D EEEET MISMT  DL + +      PEEA  D              T+THCE
Sbjct: 705  GVVEYLDAEEEETAMISMTPEDLEEHKAMRAGMPEEARDDPHRRIKQPPNPFVRTWTHCE 764

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TNY  RMDT+A VLYYPQKP
Sbjct: 765  IHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVTLTNYNVRMDTMANVLYYPQKP 824

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR LPAG NAIVAI+CYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D+
Sbjct: 825  LATTRSMEFLRFRDLPAGQNAIVAISCYSGYNQEDSVIMNQSSIDRGLFRSLFFRAYMDQ 884

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 886
            EK++G  V E F +P R++TM M+ G+YDKLD+DG+  PG+RVSG+DVIIGKT P+  D 
Sbjct: 885  EKRVGMSVVEQFEKPVRADTMRMKQGTYDKLDEDGIISPGSRVSGDDVIIGKTAPMPPDA 944

Query: 887  EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
            E  GQ ++ + +RD S  LR +E G+VDQVLLTTN +GLRFVKVR R  ++PQIGDKF+S
Sbjct: 945  EELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNTEGLRFVKVRTRVTKVPQIGDKFAS 1004

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T +G+TPDII+NPHAIPSRMTI  LIEC++ KV A  G+EG
Sbjct: 1005 RHGQKGTIGITYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALQGQEG 1064

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFTDVTV +IS+ L   G+Q RGFE MYNGHTG++L A +FLGPTYYQRL+HMVDDK
Sbjct: 1065 DATPFTDVTVTSISQILADHGFQQRGFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDK 1124

Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHV 1125
            IH+R RGP+QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERL D SDA+RVH+
Sbjct: 1125 IHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHI 1184

Query: 1126 CEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CE CGL+  IA++KK  FECR C+NKT I QV IPYA KLLFQEL AM +A RM T
Sbjct: 1185 CEICGLMTPIASIKKQQFECRPCRNKTKIAQVIIPYAAKLLFQELAAMNVATRMFT 1240


>gi|449302981|gb|EMC98989.1| hypothetical protein BAUCODRAFT_65631 [Baudoinia compniacensis UAMH
            10762]
          Length = 1254

 Score = 1445 bits (3741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/1247 (56%), Positives = 903/1247 (72%), Gaps = 85/1247 (6%)

Query: 14   QEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI-RPE 72
            +EE+ +   IT ED W VI ++FE KGLV QQLDSFDEF   TMQEI+ E+  I + R  
Sbjct: 5    EEEDYDSSVITSEDCWTVIQSFFESKGLVSQQLDSFDEFAATTMQEIISETETIAVDRNL 64

Query: 73   SQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
            S  + G  +   +  ++I FG+  +S+  MTE DG T  LFP  ARLRNLTY++P+Y+++
Sbjct: 65   SPEDDGHGATIVKKRWQIEFGKATISQAAMTEGDGVTRALFPHEARLRNLTYASPIYLEM 124

Query: 133  TKRVI---------------------------------KKGHDGEEVTETQDFTKVFIGK 159
             KRV+                                 ++  + E   +    TKVFIGK
Sbjct: 125  KKRVMIAKEKPAGSYWDEEQERWEAPEEWDGQEYETFWQRDPEDEASPDADTATKVFIGK 184

Query: 160  VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 219
            +P+ML+S  CTL   SE++L    ECP+DQGGYFIINGSEKVLIAQE+ + N V VFKKR
Sbjct: 185  LPVMLKSKICTLRNRSEQELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKKR 244

Query: 220  QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 279
              +    VAE+RS  E  +R  STM V++  RTS  G + G+ ++ATLPYI+++IP++ V
Sbjct: 245  G-SPTPVVAEIRSAIEKGSRLISTMMVKLYERTS--GTNLGKTVKATLPYIKSDIPLVAV 301

Query: 280  FRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR 339
            FRALG V+D+DIL HIC    DTQM+E+L+P LEEA  IQ ++ ALD+IG+RG   G TR
Sbjct: 302  FRALGIVSDEDILLHICKR-DDTQMLEMLKPCLEEAAAIQEREQALDFIGRRGNFAG-TR 359

Query: 340  DKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKR 399
            +KRIK+A++++QKE LPH+   +  ET+KA++ GY+++RLL   LGR  EDDRDH+G KR
Sbjct: 360  EKRIKFARDVMQKEFLPHISQEEGSETRKAFFLGYMVNRLLQVQLGRVEEDDRDHFGKKR 419

Query: 400  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 459
            LDLAGPL+  +FR+ F +L +D+R Y+ +CV+ G++ N+  A+K+  ITSGL+YSLATGN
Sbjct: 420  LDLAGPLMAQVFRLKFSQLVKDIRNYLHRCVEQGREFNINLAVKSNIITSGLRYSLATGN 479

Query: 460  WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
            WG Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPA
Sbjct: 480  WGDQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 539

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALM Y++VG+   P++E++   G E  EE    + P ATK+F+NG 
Sbjct: 540  ETPEGQACGLVKNLALMCYVSVGTPGTPLIEYMRHRGMELLEEYDAVMNPNATKVFLNGT 599

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-- 636
            WVG+H     L + L+ LRR+  +  EV ++RD+R +E++++TD GR  RPLF+++    
Sbjct: 600  WVGVHSSGHQLTEALKELRRKEVIGFEVTIIRDVREREIKVFTDAGRVMRPLFVIDNNPN 659

Query: 637  -----RLLIKKRDIIAL----------------QQRESPEDGGWHDLVAKGFIEYIDTEE 675
                  L++ +  +  L                +Q+++    GWH LV  G IEY+D EE
Sbjct: 660  SPNRGNLVLSREQVEKLSNDQKIIGSLEGQSVSEQQKAELTFGWHGLVKNGVIEYLDAEE 719

Query: 676  EETTMISMTINDLVQ---ARLHPE--EAYAD--------------TYTHCEIHPSLILGV 716
            EET MI MT +DL +   ARL  +  EA  D               +THCEIHP++ILG+
Sbjct: 720  EETAMIMMTPDDLEEHKLARLGEDWVEAKEDPHRRIKAKPNKQVRMWTHCEIHPAMILGI 779

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TN+  RMDT+A VLYYPQKPL TTR+ME 
Sbjct: 780  CASIIPFPDHNQSPRNTYQSAMGKQAMGVTLTNFGIRMDTMANVLYYPQKPLATTRSMEF 839

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V 
Sbjct: 840  LKFRDLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVV 899

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 894
            E F +P RS+T+ M+ G+YDKLDDDG+  PG+RVSGED+IIGKT PI+ D E  GQ ++ 
Sbjct: 900  EQFEKPVRSDTLKMKGGTYDKLDDDGIISPGSRVSGEDIIIGKTAPIAPDAEELGQRTKL 959

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            + +RD S  LR +E G+VDQVLLTTN +GL+FVKVR R+ ++PQIGDKF+SRHGQKGT+G
Sbjct: 960  HVKRDVSTPLRSTENGIVDQVLLTTNTEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIG 1019

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP+T +G+TPDII+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFTDVT
Sbjct: 1020 ITYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALTGQEGDATPFTDVT 1079

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1074
            + +IS  L + G+Q RGFE MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP+
Sbjct: 1080 LTSISTLLEEHGFQRRGFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHARARGPL 1139

Query: 1075 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA- 1133
            QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERL D SDA+RVH+CE CGL+  
Sbjct: 1140 QILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICEICGLMTP 1199

Query: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            IA LK+ + ECR C+NK  I QV IPYA KLLFQEL AM +A RM T
Sbjct: 1200 IAKLKEKTIECRQCRNKNRIAQVIIPYAAKLLFQELAAMNVATRMFT 1246


>gi|400592641|gb|EJP60759.1| DNA-dependent RNA polymerase II beta subunit [Beauveria bassiana
            ARSEF 2860]
          Length = 1261

 Score = 1444 bits (3738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 708/1238 (57%), Positives = 890/1238 (71%), Gaps = 84/1238 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            IT ED W VIS++FE KGLV QQ  SFDEF Q+T+Q++V E + I +    Q NP    D
Sbjct: 20   ITPEDCWTVISSFFESKGLVSQQTASFDEFTQSTIQDLVSEYSKISL---DQPNPPSNDD 76

Query: 83   FAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV---- 136
               ++  Y+I FG I +S+P ++E+DG   +L P   R RNLTY+AP+Y+ +TK+V    
Sbjct: 77   RKISVRRYEIEFGSIMVSRPSISETDGTVTSLLPYECRDRNLTYAAPVYIKITKKVQAAV 136

Query: 137  -----------------IKKGH-------DGEEVTETQDFTK-------VFIGKVPIMLR 165
                              K G          E+  E ++  K       VF+GK+P+M++
Sbjct: 137  ETEIPLHELDDAQQTEYAKTGELPTRLAWRSEDAPEPENSNKPDAWKDMVFVGKMPVMVK 196

Query: 166  SSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 225
            S  C L +  +++L  + ECPYDQGGYF+INGSEKVLIAQE+ + N V VFKK QP+ Y 
Sbjct: 197  SKVCHLSREHDENLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYT 256

Query: 226  YVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGF 285
            Y AE+RS  E  +R  S+M +++  +  +  G  GQ I  TLP+++ ++P+ IVFRALG 
Sbjct: 257  YTAEIRSALEKGSRLISSMMLKLYGKGESARGGFGQTIHTTLPFVKADLPVAIVFRALGV 316

Query: 286  VADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGA--TVGVTRDKRI 343
            V+D+DIL HICYD +D+QM+E+LRP +EEAF +Q+++VALD+IGKRG     G+ RDKRI
Sbjct: 317  VSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGRDKRI 376

Query: 344  KYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLA 403
            + A++ILQKE LPH+      ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLA
Sbjct: 377  RVARDILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLA 436

Query: 404  GPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-Q 462
            GPLL  LFR + R++  ++  Y+++CV+  +  NL   +K  T+++GLKYSLATGNWG Q
Sbjct: 437  GPLLAKLFRGIMRRMHSELANYLRRCVEGNRHFNLAVGVKPGTLSNGLKYSLATGNWGDQ 496

Query: 463  ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE 522
              A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPE
Sbjct: 497  KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 556

Query: 523  GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI 582
            GQACGLVKNL+LM Y++VGS A P+++F+   G E  EE  P   P ATKIFVNG WVG+
Sbjct: 557  GQACGLVKNLSLMCYVSVGSPAEPLIDFMINRGMEVIEEYEPLRYPHATKIFVNGTWVGV 616

Query: 583  HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV--------- 633
            H+DP+ L   +   RR+  +  EV +VR+IR +E +I++D GR  RP+F V         
Sbjct: 617  HQDPKHLADQVFDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQSKNDPETG 676

Query: 634  -EKQRLLIKKRDI--IALQQRESPED----GGWHDLVAKGFIEYIDTEEEETTMISMTIN 686
             EK +L + K  +  +A +Q + P+D     GW  L+  G +EY+D EEEET+MI MT  
Sbjct: 677  LEKGQLGLTKDLVNRLAQEQADPPDDPEMKTGWEGLIKAGAVEYLDAEEEETSMICMTPE 736

Query: 687  DLVQARLHPEEAYAD--------------------TYTHCEIHPSLILGVCASIIPFPDH 726
            DL   RL       D                     YTHCEIHPS+ILG+CASIIPFPDH
Sbjct: 737  DLELYRLQKAGVAVDDDHGDDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 796

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG 
Sbjct: 797  NQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQ 856

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P   +
Sbjct: 857  NAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIFEKPFHQS 916

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYT---RRDHSIS 903
            T+ M+HG+YDKLD+DG+  PG RVSGED+IIGKT PI   E Q   +R T   RRD S  
Sbjct: 917  TLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDP-ETQDLGARTTAHQRRDISTP 975

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
            LR +E G+VDQV++T NAD +++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP
Sbjct: 976  LRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMP 1035

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023
            +T EG+TPDII+NPHAIPSRMTI  LIEC++ KV+   G EGDATPFTDVTVD++S  L 
Sbjct: 1036 FTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFTDVTVDSVSDLLR 1095

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
            K GYQ RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP E
Sbjct: 1096 KHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVE 1155

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSF 1142
            GR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+  IANL K SF
Sbjct: 1156 GRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLMTPIANLSKQSF 1215

Query: 1143 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            ECR CKNKT I Q+HIPYA KLLFQEL +M IA RM T
Sbjct: 1216 ECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFT 1253


>gi|367041247|ref|XP_003651004.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
 gi|346998265|gb|AEO64668.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
          Length = 1282

 Score = 1444 bits (3737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 715/1248 (57%), Positives = 897/1248 (71%), Gaps = 99/1248 (7%)

Query: 20   EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
            E+ IT ED W VIS+YF+ KGLV QQ+DSFDEF   T+Q +VDE AD+ +      NPG 
Sbjct: 39   EDSITPEDCWEVISSYFDMKGLVSQQIDSFDEFTTTTIQSLVDEYADLTL---DHPNPGD 95

Query: 80   QS--DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV- 136
             S  D A   Y I FG + +SKP +TE+ GET  L P   R RNLTYSAP+Y  V+KR  
Sbjct: 96   DSGRDIAMRRYDIHFGNVMISKPTLTETTGETTVLLPYECRDRNLTYSAPMYCRVSKRAR 155

Query: 137  ------------------------------------------IKKGHDGEEVTETQDFTK 154
                                                      I KG D E+     D   
Sbjct: 156  VAVNEEVRLEDMDDDQRAYMAQTGEVPKTIRWEEEDTGPREGIAKGDDDEQ----GDL-- 209

Query: 155  VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVY 214
            +F+GK+P+M++S  C L+   ++ L +L ECPYDQGGYFIINGSEKVLIAQE+ + N V 
Sbjct: 210  IFLGKLPVMVKSQVCHLHGEDDESLFQLNECPYDQGGYFIINGSEKVLIAQERSAANIVQ 269

Query: 215  VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 274
            VFKK      +Y AE+RS  E  +R  S++ +++ ++ S   G     +  TLPY+R ++
Sbjct: 270  VFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHTKASPDKGRQANTVSVTLPYVREDV 329

Query: 275  PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRG-A 333
             + IVFRALG V+D+DIL HICYD  DTQM+E LRP +EEAF IQ++++ALD+IGKRG  
Sbjct: 330  SLAIVFRALGIVSDEDILNHICYDRSDTQMLEALRPCIEEAFCIQDREIALDFIGKRGNG 389

Query: 334  TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 393
              G  R  RI+ AK++LQKEMLPH+   + CET+KA++ GY++H+LL CALGRR  DDRD
Sbjct: 390  NAGQNRSNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQCALGRRDTDDRD 449

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G KRLDLAGPLL  LFR + R++T+D+ +Y+++C+D  K+ +L   IK  T+T+GLKY
Sbjct: 450  HFGKKRLDLAGPLLAKLFRGIIRRMTQDLMSYMKRCIDTNKNFSLALGIKHSTLTNGLKY 509

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            SLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ W
Sbjct: 510  SLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHW 569

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            G++CPAETPEGQACGLVKNL+LM Y++VG+ A PI+EF+     E  EE  P   P ATK
Sbjct: 570  GLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVEFMIARNMEVLEEYEPLRYPNATK 629

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            +FVNG WVG+H+DP+ LV  ++ LRR+  ++ EV +VRDIR +E +I++D GR  RPLF 
Sbjct: 630  VFVNGTWVGVHQDPKHLVSLVQGLRRKNVISFEVSLVRDIRDREFKIFSDAGRVMRPLFT 689

Query: 633  VE----------KQRLLIKKRDIIALQQ-----RESPEDGGWHDLVAKGFIEYIDTEEEE 677
            VE          K +L++ K  I  L+      +  P+  GW  L+  G IEY+D EEEE
Sbjct: 690  VEQEDNGANGVEKGQLILNKEHIQRLEADKELGKYHPDYWGWKGLLRSGAIEYLDAEEEE 749

Query: 678  TTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSLILG 715
            T MI M+  DL                      ++ +++P       YTHCEIHPS++LG
Sbjct: 750  TAMICMSPEDLDMFRLSKMGFNVTDTSGQGNSRIRTKINPT---THMYTHCEIHPSMLLG 806

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            +CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME
Sbjct: 807  ICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME 866

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
             L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D EK++G  +
Sbjct: 867  FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINI 926

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-AS 893
             E F +P+RS+T+ ++H +YDKLD DG+  PG RVSGED+IIGKT PI+ + A+ GQ ++
Sbjct: 927  IEKFEKPNRSDTLRLKHSTYDKLDMDGIVAPGVRVSGEDIIIGKTCPINPENAELGQRST 986

Query: 894  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
            ++ +RD S  LR +E+G+VD V+LTTN DG+R+VKVRVR+ +IPQIGDKF+SRHGQKGT+
Sbjct: 987  QHVKRDASTPLRSTESGIVDSVILTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTI 1046

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            G+T+ QEDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV+   G EGDATPFT+V
Sbjct: 1047 GVTFRQEDMPFTCEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTEV 1106

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TVD++S  L + GYQ RGFE MY+GHTGR+L A +F GPTYYQRL+HMVDDKIH+R RGP
Sbjct: 1107 TVDSVSALLREHGYQSRGFEIMYHGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGP 1166

Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
            +QI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVH+CE CGL+ 
Sbjct: 1167 LQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMT 1226

Query: 1134 -IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             IANL K SFECR CKNKT I QVHIPYA KLLFQELM+M IA RM T
Sbjct: 1227 PIANLTKQSFECRPCKNKTKIAQVHIPYAAKLLFQELMSMNIASRMFT 1274


>gi|452843951|gb|EME45885.1| hypothetical protein DOTSEDRAFT_42537 [Dothistroma septosporum NZE10]
          Length = 1260

 Score = 1444 bits (3737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 715/1243 (57%), Positives = 908/1243 (73%), Gaps = 77/1243 (6%)

Query: 11   QHQQEEEDEEEE-ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 69
            Q + EE+D +   IT ED W VI ++F+ KGLV QQLDSFDEF   TMQEIV E+A I I
Sbjct: 14   QMEGEEDDTDMNMITAEDCWTVIHSFFDAKGLVSQQLDSFDEFASTTMQEIVSETAPIVI 73

Query: 70   RPE-SQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 128
                +  + G      +   ++    + +S+  MT+ DG T  LFP  +RLRNLTY++P+
Sbjct: 74   DQNIASEDEGSNMPIIKKRIELHLQDVTISQAAMTDGDGVTRALFPHESRLRNLTYASPI 133

Query: 129  YVDVTKR------------VIKKGH-------DG------EEVTETQDFTK--VFIGKVP 161
            ++ +TK+            + + G+       DG      EE  +  D T+  +FIGK+P
Sbjct: 134  FLSITKKQKLCRERSVGGYLDETGYWNDPPDFDGQTELHWEEDPDHPDETQGDIFIGKLP 193

Query: 162  IMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 221
            IML+S  C L   SE++L    ECP+DQGGYFIINGSEKVLIAQE+ + N V VFKK+  
Sbjct: 194  IMLKSKICALRNRSEQELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKKKGT 253

Query: 222  NKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFR 281
            N    VAE+RS  E   R  S+M ++ L + SA   + GQ I+ ++PYI+++IPI IVFR
Sbjct: 254  NT-PVVAEIRSAIEKGTRLISSMQLK-LYKQSANSNAHGQTIKVSVPYIKSDIPIAIVFR 311

Query: 282  ALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDK 341
            ALG V+D+DIL HIC    DT+M+E L+P LEEAFVIQ++  ALD+IG+RG   G T+++
Sbjct: 312  ALGVVSDEDILNHICSK-SDTRMLEYLKPCLEEAFVIQDRDSALDHIGRRGQQQG-TKER 369

Query: 342  RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
            RI+YA++I+QKE LPH+   +  ETKKA++ GY+++RLL CALGR  EDDRDH+G KRLD
Sbjct: 370  RIRYARDIMQKEFLPHISQEEGSETKKAFFLGYMVNRLLQCALGRTEEDDRDHFGKKRLD 429

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
            LAGPL+  +FR+ F++L +D++ Y+ +C++ G++ N+  AIK+  ITSGL+Y LATGNWG
Sbjct: 430  LAGPLMAQVFRLKFQQLVKDMKTYLHRCIEGGREFNIALAIKSNIITSGLRYCLATGNWG 489

Query: 462  -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 520
             Q  AA  +AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 490  DQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 549

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNL+LM Y+TVG+ A P+++F+ + G +  EE  P + P+ATKIF+NG W+
Sbjct: 550  PEGQACGLVKNLSLMCYVTVGTPAEPLIDFMRQRGMDLLEEYDPVLNPKATKIFLNGTWI 609

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 636
            G+H+D   L  TLR LRR+  V+ EV ++RD+R +E++I+TD GR  RPLF+VE      
Sbjct: 610  GVHKDAGGLTNTLRGLRRKGVVSFEVTIIRDVREREIKIFTDCGRVCRPLFVVENDPKST 669

Query: 637  ------------RLLIKKRDIIALQQRESPEDG-----GWHDLVAKGFIEYIDTEEEETT 679
                        + L   ++++A  Q  S E+      GW  L+ KG +EY+D EEEET 
Sbjct: 670  NNGNLVLQREHCQRLADDQNVLAELQGVSEEERETKIFGWKGLIDKGVVEYLDAEEEETA 729

Query: 680  MISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGVCASI 720
            MI MT  DL + +L                   +    Y  T+THCEIHP++ILG+CASI
Sbjct: 730  MIIMTPEDLEEHKLMRQGVQMDDTRADPHRRIKNKPNPYVRTWTHCEIHPAMILGICASI 789

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMG+ +TNY  RMDT+A VLYYPQKPL TTR+ME+L FR
Sbjct: 790  IPFPDHNQSPRNTYQSAMGKQAMGVTLTNYNTRMDTMANVLYYPQKPLATTRSMEYLKFR 849

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
            +LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+EK++G  V E F 
Sbjct: 850  ELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQEKRVGMSVVEAFE 909

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRR 898
            +P R++TM M+ G+YDKLD+DG+  PG+RVSGED++IGKT P+  D E  GQ  + +T+R
Sbjct: 910  KPVRADTMRMKKGTYDKLDEDGIITPGSRVSGEDILIGKTAPMPPDAEELGQRTTAHTKR 969

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  LR +E G++DQVL+TTN +GLRFVKVR R  ++PQIGDKF+SRHGQKGTVG+TY 
Sbjct: 970  DVSTPLRSTENGVIDQVLVTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQKGTVGITYR 1029

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
            QEDMP+T +G+TPDII+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFTDVTV ++
Sbjct: 1030 QEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALNGQEGDATPFTDVTVTSV 1089

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
            S+ L   G+Q RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP+QILT
Sbjct: 1090 SEILASHGFQQRGFEVMYNGHTGRKLNAQVFLGPTYYQRLRHMVDDKIHARARGPLQILT 1149

Query: 1079 RQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANL 1137
            RQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERL D SDA+RVHVCE CGL+  IA+L
Sbjct: 1150 RQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLLDVSDAFRVHVCEICGLMTPIASL 1209

Query: 1138 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            KK  FECR CKNKT I Q+ IPYA KLLFQEL AM +A RM T
Sbjct: 1210 KKQQFECRPCKNKTRIAQIIIPYAAKLLFQELAAMNVATRMFT 1252


>gi|407925273|gb|EKG18288.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
            phaseolina MS6]
          Length = 1258

 Score = 1442 bits (3734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 714/1252 (57%), Positives = 909/1252 (72%), Gaps = 85/1252 (6%)

Query: 6    YDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            YD +  ++ E ED    IT ED W VIS++FEEKGLV QQ+DS+DEF++NT+  IV+   
Sbjct: 8    YDNDMGYEGELEDT---ITAEDCWTVISSFFEEKGLVAQQIDSYDEFVKNTLPNIVEHMG 64

Query: 66   DIEIRPESQHNPG-QQSDFAETI---YKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
             I +     H P   +SD    I   Y+++FG++ + +P +T+  G T  +FP  ARLRN
Sbjct: 65   AITM----DHTPPIDESDPDPIIKKRYEVNFGEVKMGRPSLTDG-GVTRDVFPHEARLRN 119

Query: 122  LTYSAPLYVDVT-------KRVIKKGHDGEE------------VTETQDFTKVFIGKVPI 162
            LTY+A +  D++       +R I    D +E            V    D  +VF G++P+
Sbjct: 120  LTYAAAMMSDMSTKTSVARERPIAPSGDMDEDETTGATELVWEVDSQTDKEQVFFGRLPV 179

Query: 163  MLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 222
            ML+S  C L   +++ L    ECPYDQGGYF+INGSEKVLIAQE+ + N V VF+KRQ +
Sbjct: 180  MLKSYVCGLRNLTDEQLYAHSECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKRQ-S 238

Query: 223  KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRA 282
               ++AE+RS  E  +R  S+M +++  +        G  + ATLPY++ ++PI IVFRA
Sbjct: 239  PTPWIAEIRSAVEKGSRLLSSMTLKLYEKPQLWKEGQGCCLYATLPYVKADVPIPIVFRA 298

Query: 283  LGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGA--TVGVTRD 340
            LG V+D+DI+ HIC+D  D ++ME +RPS+EE+ +IQ++  ALD+IG+RG+  + G T+ 
Sbjct: 299  LGIVSDEDIISHICFDKNDNKLMEAIRPSIEESVLIQDRVSALDFIGRRGSNPSTGGTKR 358

Query: 341  KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRL 400
            +R+K A++I+QKE LPH+   +  ETKKA++ GY+I+RLL C LGRR EDDRDH+G KRL
Sbjct: 359  ERVKLARDIIQKEFLPHISQTEGSETKKAFFLGYMIYRLLQCHLGRRDEDDRDHFGKKRL 418

Query: 401  DLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNW 460
            DLAGPLL  LFR LF KLTRDV  Y++KCV+ G+  +LQ A+K  TI++GLKYSLATGNW
Sbjct: 419  DLAGPLLANLFRSLFLKLTRDVYNYLKKCVEAGRPFSLQSAVKQGTISNGLKYSLATGNW 478

Query: 461  G-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAE 519
            G Q  AA ++AGVSQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAE
Sbjct: 479  GDQKKAASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 538

Query: 520  TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 579
            TPEGQACGLVKNL+LM ++TVGS   PI +F+ +   E  EE  P+V P ATKIFVNG W
Sbjct: 539  TPEGQACGLVKNLSLMCHVTVGSDVTPIQDFMTQRNMELLEEYEPSVSPHATKIFVNGVW 598

Query: 580  VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE----- 634
            VG+HRDP  LV  +++LRR   ++ E+ ++RD+R +E +I+TD GR  RPLFI++     
Sbjct: 599  VGVHRDPTQLVSVVKKLRRDGTLSPEMSLIRDVRDREFKIFTDAGRVCRPLFIIDDNPTS 658

Query: 635  --KQRLLIKKRDIIALQQRESPEDGG------------WHDLVAKGFIEYIDTEEEETTM 680
              K  L++ +  I  L++ +  +  G            W  L+  G +EY+D EEEE+ M
Sbjct: 659  ANKGNLVLSREHIDKLEEDQQIDVSGLSDDERDERRYGWKGLLTSGVVEYMDAEEEESAM 718

Query: 681  ISMTINDL---------------VQARLH---------PEEAYADTYTHCEIHPSLILGV 716
            I MT +DL                + RL+         P       YTHCEIHPS+ILG+
Sbjct: 719  IVMTPDDLRAHHRARQGIVDEEDEETRLNRDPHERVVPPPNPSVKQYTHCEIHPSMILGI 778

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TNY+ RMDT+  VLYYPQKPL TTR+ME+
Sbjct: 779  CASIIPFPDHNQSPRNTYQSAMGKQAMGVCLTNYELRMDTMVNVLYYPQKPLATTRSMEY 838

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EKK+G  V 
Sbjct: 839  LRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKVGMAVV 898

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 894
            E F +P RS+TM ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ 
Sbjct: 899  EQFEKPMRSDTMRLKHGTYDKLDDDGVVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKM 958

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            + +RD S  LR +E G+VDQVLLTTN+DGL+FVKVR R+ ++PQIGDKF+SRHGQKGT+G
Sbjct: 959  HIKRDVSTPLRSTENGIVDQVLLTTNSDGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIG 1018

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY  EDMP+T EG+TPD+I+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFTDVT
Sbjct: 1019 ITYRHEDMPFTREGLTPDLIINPHAIPSRMTIAHLIECLLSKVGALRGQEGDATPFTDVT 1078

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1074
            V  +S  L + GYQ RGFE MYNGHTG++LTA +FLGPTYYQRL+HMVDDKIH+R RGPV
Sbjct: 1079 VTQVSSLLREHGYQSRGFEIMYNGHTGKKLTAQVFLGPTYYQRLRHMVDDKIHARARGPV 1138

Query: 1075 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAI 1134
            QILTRQP EGR+RDGGLRFGEMERDCMI+HGAS FLKERLF+ SDAYRVH+CE CGL+  
Sbjct: 1139 QILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAYRVHICEICGLMTP 1198

Query: 1135 -----ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
                 +NLK+N FECR CKNKT I Q++IPYA KLLFQEL +M IA RM TK
Sbjct: 1199 IACPRSNLKRNQFECRPCKNKTKIAQIYIPYAAKLLFQELASMNIASRMYTK 1250


>gi|396481244|ref|XP_003841192.1| similar to DNA-dependent RNA polymerase II second largest subunit
            [Leptosphaeria maculans JN3]
 gi|312217766|emb|CBX97713.1| similar to DNA-dependent RNA polymerase II second largest subunit
            [Leptosphaeria maculans JN3]
          Length = 1360

 Score = 1441 bits (3730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/1244 (56%), Positives = 898/1244 (72%), Gaps = 79/1244 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ-QS 81
            +  ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+  + +   + ++P + ++
Sbjct: 119  VAPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYDPNEDEN 178

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV-IKKG 140
               +  Y+I+FG++YL++P  TE DG T  L+P  ARLRNLTYS  +  D++ R+ + + 
Sbjct: 179  PIIKRRYEITFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADISNRIMVARE 238

Query: 141  HDGEEVTETQDF--------------------------TKVFIGKVPIMLRSSYCTLYQN 174
            H+     E  D                            +VFIGK+P+MLRS  C L   
Sbjct: 239  HNAMVEGEDDDLDGGYTAGGATQIRWEREDMPGEEEAAARVFIGKLPVMLRSELCHLRNQ 298

Query: 175  SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 234
            S+ DL  L ECPYDQGGYF+INGSEKVLIAQE+ + N V VF+K+Q     ++AE+RS  
Sbjct: 299  SDADLFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ-GPIPWIAEIRSAV 357

Query: 235  ESQNRPPSTMFVRMLSRTSAKGGS-SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293
            E   R  S+  ++    + A G    G +  ATLPY+++EIP+ IVFRALG V+D++IL 
Sbjct: 358  EKGTRLISSFTIKWAENSLAGGKRVPGPFAYATLPYVKSEIPMAIVFRALGIVSDEEILS 417

Query: 294  HICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKE 353
            HI YD  DTQM+ELL+PS+EE  V+Q+++ ALD+I +RGA    T+D+R+K+A++I+Q+E
Sbjct: 418  HIVYDRTDTQMLELLKPSIEEGSVVQDRESALDFIARRGAQ-QATKDRRLKFARDIMQRE 476

Query: 354  MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413
             LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+
Sbjct: 477  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 536

Query: 414  LFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGV 472
            LF KLT+DV  Y+Q+CV++ +D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGV
Sbjct: 537  LFLKLTKDVFKYLQRCVESNQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 596

Query: 473  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 532
            SQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL
Sbjct: 597  SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 656

Query: 533  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 592
            +LM Y++VGS A PI++F+ +   +  EE      P ATKIFVNG WVG+H +P  LV  
Sbjct: 657  SLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQSPDATKIFVNGVWVGVHSNPHQLVSV 716

Query: 593  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--- 642
            ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF++E       + +L+  K   
Sbjct: 717  VQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVIENDIRKPNRHQLIFTKEIS 776

Query: 643  RDIIALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTINDL--- 688
            R +   Q+ +    G           GW  L+  G IEY+D EEEET MI+ +  DL   
Sbjct: 777  RKLTYEQETQDQRQGWSEEDIAAATYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLDAW 836

Query: 689  ----------------VQARLHPEEAYADT----YTHCEIHPSLILGVCASIIPFPDHNQ 728
                             + RL   +   DT    YTHCEIHP++ILG+CASIIPFPDHNQ
Sbjct: 837  RDMKTGRAPDERRLKDPKFRLSSIKPKPDTRVHAYTHCEIHPAMILGICASIIPFPDHNQ 896

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 897  SPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNA 956

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++T+
Sbjct: 957  IVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTL 1016

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRH 906
             ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  LR 
Sbjct: 1017 RLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIATDAQELGQKTTLHTKRDVSTPLRS 1076

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP++ 
Sbjct: 1077 TENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSR 1136

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EG+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFTD+TVD IS+ L   G
Sbjct: 1137 EGLTPDLIINPHAIPSRMTIAHLVECLLSKVGAIEGREGDATPFTDITVDQISEILESKG 1196

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            YQ RGFE MYNGHTG+++   IFLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+
Sbjct: 1197 YQKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRA 1256

Query: 1087 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECR 1145
            RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA LKK  +ECR
Sbjct: 1257 RDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIAQLKKGQYECR 1316

Query: 1146 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKD 1189
             C+NKT I Q+HIPYA KLLFQEL+AM IA RM T       +D
Sbjct: 1317 PCQNKTRISQIHIPYAAKLLFQELLAMNIATRMFTDRSGLSVRD 1360


>gi|401827615|ref|XP_003888100.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
            50504]
 gi|392999300|gb|AFM99119.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
            50504]
          Length = 1141

 Score = 1441 bits (3729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 684/1166 (58%), Positives = 888/1166 (76%), Gaps = 29/1166 (2%)

Query: 20   EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
            E   T+E +W++IS++FE+KGLVRQQLDSFD+F++  MQE++DES  I +    Q  P  
Sbjct: 2    ESMFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVIDESPAIIV----QSAPTA 57

Query: 80   QSDFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
             ++  + I  + FGQIY+SKP + TESDG T T+FP  AR R+LTY++PL++DV K  + 
Sbjct: 58   GTETQKRI-TVRFGQIYVSKPPIYTESDGRTITVFPNEARTRDLTYASPLFIDVIKETVS 116

Query: 139  KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
            +      V +   +++V  G +P+MLRSSYC L+   +KDL +LGECPYDQGGYFI+NGS
Sbjct: 117  E----LGVVDKHKYSRVPFGSLPVMLRSSYCVLHGLGDKDLIDLGECPYDQGGYFIVNGS 172

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKV++AQE+M++N VYVFKK QP  Y + AE+RS+ E  +R PST+ +++     A    
Sbjct: 173  EKVIVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPVA---- 228

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
                IR +LP ++ ++P+ +++RALGF++DK+I++HI Y+  D +M ELL+ S+EE  V+
Sbjct: 229  ----IRVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDDEMFELLKESIEEGMVV 283

Query: 319  QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            Q+Q VALDYIGKR A VG  ++KRI  AK++L KE+LPH+GT +FCETKKAY+ GYI+ R
Sbjct: 284  QDQNVALDYIGKRTAPVGTPQEKRIMMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQR 343

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LLL ALGRR  DDRDHYG KR+DL+GPLL  LFR LF+KL  D   ++QKC++NG++ N+
Sbjct: 344  LLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTTRHMQKCIENGREFNI 403

Query: 439  QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
               +KA  IT G +Y+LATGNWG QA A  TRAGV+QVLNR  + STLSHLRR+N+PI +
Sbjct: 404  ALGLKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEK 463

Query: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
            EGKLA PRQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI+VGS++ P++EFLEE G E
Sbjct: 464  EGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLEECGVE 523

Query: 558  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
            + EEIS   +  ATK+FVNG W+GIH DP  LVK+L+ LRR ++++ EV +VRDIR KE+
Sbjct: 524  SLEEISNFQLNTATKVFVNGVWIGIHSDPVYLVKSLKLLRRSLEMDKEVSIVRDIREKEI 583

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RI +D GR  RPL +V+  +L+I + DI  L++ E      W +L+ +GFIE++D EEEE
Sbjct: 584  RIQSDAGRPCRPLMVVKDNKLVITEEDIGRLRRGEIK----WDNLIGEGFIEFLDVEEEE 639

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
             +MI+M+   L   R    +    +YTHCEIHP+LILG+CAS IPFPDHNQSPRNTYQSA
Sbjct: 640  MSMIAMSTKVLDDERKSSSDVKI-SYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSA 698

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMGIY TN+  RMDTL+ +L+YPQKPLVTT++ME+L F++LP+G NA+VAIACYSG
Sbjct: 699  MGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSG 758

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMNQS+IDRG FRS F+R+Y D+E      V E+F +P+R + + M++ +Y+K
Sbjct: 759  YNQEDSVIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPNRGSVLRMKNLNYNK 818

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTTPISQDE-AQGQASRYTRRDHSISLRHSETGMVDQVL 916
            LDDDGL  PGTRV+G+DV+IGK TPI   E +  +   Y  +D S ++R +ETG+VD V+
Sbjct: 819  LDDDGLINPGTRVTGDDVLIGKITPILDPERSTKETPVYVYKDSSTAMRRTETGIVDTVI 878

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            +T N DG +F KV+VRS RIPQ+GDKF+SRH QKGT+G+T  QEDMP+T +GI PDII+N
Sbjct: 879  VT-NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIIN 937

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1036
            PHAIPSRMTIG LIEC++GKV+A  G+EGDATPF+ ++V+ IS  L   G+Q RG E MY
Sbjct: 938  PHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFSGMSVNEISARLKSYGFQQRGLEVMY 997

Query: 1037 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1096
            NG TGR+L A IF GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEM
Sbjct: 998  NGMTGRKLRAQIFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1057

Query: 1097 ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQV 1156
            ERDC+I+HGAS FLKERL D SDAY  +VC  CGL+A+   K N  EC+GC N T++  V
Sbjct: 1058 ERDCIISHGASAFLKERLMDVSDAYSCYVCNICGLLAMGGSKVN--ECKGCSNTTNVSIV 1115

Query: 1157 HIPYACKLLFQELMAMAIAPRMLTKE 1182
             IPYA KLL QELM M IAPR+  +E
Sbjct: 1116 EIPYAFKLLIQELMGMNIAPRIRFEE 1141


>gi|323449816|gb|EGB05701.1| hypothetical protein AURANDRAFT_38329 [Aureococcus anophagefferens]
          Length = 1233

 Score = 1437 bits (3719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/1070 (64%), Positives = 842/1070 (78%), Gaps = 31/1070 (2%)

Query: 129  YVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
            +VDV+ RV  +  +G   T   D  K F+G VPIMLRS +C L   S+K+L ELGEC YD
Sbjct: 173  HVDVSARV--RLINGGSSTHRIDSPKEFLGYVPIMLRSRFCVLADKSDKELCELGECIYD 230

Query: 189  QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
            QGGYF+INGSEKV++AQE+MS NHVY F+K+QP+KY++V E RS  E   RP ST++++M
Sbjct: 231  QGGYFVINGSEKVVVAQERMSNNHVYCFRKKQPHKYSWVVECRSHVEHGARPTSTIYMQM 290

Query: 249  LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
             ++ + +G S G  IR TLPY+R ++P+I+VFRALGFVAD+DILEH+ YDF DT+MME L
Sbjct: 291  YNK-AGRGQSQGNQIRVTLPYVRVDVPVIVVFRALGFVADRDILEHVVYDFSDTEMMERL 349

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            RPSL+EAFVIQNQ +ALD+IG+RG+   + R KR++YAKE+LQKE+LPHVGT +  +TKK
Sbjct: 350  RPSLDEAFVIQNQTIALDFIGRRGSATNIGRSKRVQYAKELLQKEVLPHVGTEEQSDTKK 409

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            A++ GYI+H+LL+C+L R  EDDRDHYG KRLDLAGPLLGGLFRMLFRKLT+DV AY+QK
Sbjct: 410  AFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQK 469

Query: 429  CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 488
            C+D+G+D NL  AIK++ +T GL+YSLATGNWG    A +RAGVSQVLNRLTYASTLSHL
Sbjct: 470  CIDDGRDFNLASAIKSRVVTDGLRYSLATGNWGDRKDA-SRAGVSQVLNRLTYASTLSHL 528

Query: 489  RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
            RRLN+P+GREGK AKPRQLHN+ WG +CPAETPEGQA GLVKNLALM Y++VGS   PIL
Sbjct: 529  RRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPIL 588

Query: 549  EFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEV 606
            EFLEEW  EN EEISP  I  P  TKIFVNG WVG+HRDP  L  TLR LRR++D++ EV
Sbjct: 589  EFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDIDPEV 648

Query: 607  GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA----LQQRES------PED 656
             VVRDI+ KELR+YTD GR  RPL IVE    + + R   A    L+ R+S        D
Sbjct: 649  SVVRDIKEKELRVYTDAGRVCRPLLIVEAASTVTRVRSQEATFQELRLRKSHVQKLVNGD 708

Query: 657  GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
             GW  L+ KG +E IDTEEEET MI+M  +DL        E Y+ TYTHCEIHPS+ILG+
Sbjct: 709  LGWTQLLVKGLVELIDTEEEETAMIAMIPSDL-------NEPYSSTYTHCEIHPSMILGI 761

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            C SIIPFPDHNQSPRNTYQSAMGKQAMGIY +N+Q RMDTL++VL+YPQKPL TTRAMEH
Sbjct: 762  CGSIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFQQRMDTLSHVLHYPQKPLATTRAMEH 821

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL-- 834
            LHFR+LP+G+NAIVAI CY+GYNQEDS+IMNQ++IDRG FRS F+R+Y D+E   G    
Sbjct: 822  LHFRELPSGVNAIVAIMCYTGYNQEDSLIMNQAAIDRGLFRSTFYRTYSDKEHNKGIWDS 881

Query: 835  ---VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 891
               ++E F RP+R     MRHGSY+K+D DGL  PG RVSG D+++GKT+P      + +
Sbjct: 882  PEYLQETFERPNRDECTAMRHGSYEKIDSDGLVSPGVRVSGSDILVGKTSPSWHSGLKAE 941

Query: 892  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
             S  ++RD S ++R +E+G+VDQV+L+TN DG++F KVR R++RIPQIGDKF+SRHGQKG
Sbjct: 942  RSGPSKRDSSTTMRPNESGLVDQVMLSTNQDGMKFTKVRTRTIRIPQIGDKFASRHGQKG 1001

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T+GMTY QEDMPWT +G++PDIIVNPHAIPSRMTIG L+EC+  KV A  GKEGDATPFT
Sbjct: 1002 TIGMTYAQEDMPWTRDGVSPDIIVNPHAIPSRMTIGHLVECLQSKVGALTGKEGDATPFT 1061

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
            DV+VD I+  LH+ GY   G E MY+GHTGR + A +FLGPT+YQRLKH+VDDKIH+R R
Sbjct: 1062 DVSVDQIAGVLHELGYHRHGNEVMYSGHTGRIIHAKVFLGPTFYQRLKHLVDDKIHARSR 1121

Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
            GPV +LTRQP EGR+RDGGLR GEMERDC+I+HG S FL++R+F  SD Y +HVC  CGL
Sbjct: 1122 GPVTMLTRQPMEGRARDGGLRMGEMERDCLISHGVSSFLRDRMFANSDPYSIHVCTLCGL 1181

Query: 1132 IAIANLKKNSFEC--RGCKN-KTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
            IA A+L+K +F C  + C++  + IV+VHIPYACKLLFQELMAM IAPR+
Sbjct: 1182 IAHADLRKRAFWCNNKDCQHANSSIVRVHIPYACKLLFQELMAMCIAPRI 1231



 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/112 (63%), Positives = 91/112 (81%), Gaps = 1/112 (0%)

Query: 22  EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
           EITQEDAW VISAYF EKGLVRQQLDSFDEFIQNTMQE+VD+S ++ ++PE+Q+ PGQ +
Sbjct: 2   EITQEDAWTVISAYFAEKGLVRQQLDSFDEFIQNTMQELVDDSGELVVKPEAQYAPGQLA 61

Query: 82  DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT 133
               T Y + F Q+Y+SKP  TE DG T+ +FP  ARLRN+TY++P+YVD++
Sbjct: 62  ATPST-YFVLFNQVYVSKPTATEKDGTTSNMFPHEARLRNMTYASPMYVDIS 112


>gi|396082220|gb|AFN83830.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon romaleae
            SJ-2008]
          Length = 1141

 Score = 1436 bits (3716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 677/1166 (58%), Positives = 886/1166 (75%), Gaps = 29/1166 (2%)

Query: 20   EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
            E   T+E +W++IS++FE+KGLVRQQLDSFD+F++  MQE+++E+  I +    Q  P  
Sbjct: 2    ESIFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVRTKMQEVINENPAIIV----QSAPTA 57

Query: 80   QSDFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
             ++  + I  + FGQIY+SKP + TESDG T T+FP  AR+R+LTY++PL++DV K  + 
Sbjct: 58   GTEIQKRI-TVRFGQIYVSKPPIYTESDGRTITVFPNEARIRDLTYASPLFIDVIKETVS 116

Query: 139  KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
            +      V +   +++V  G +P+MLRSSYC L+   +KDL +LGECPYDQGGYFI+NGS
Sbjct: 117  E----LGVVDKHKYSRVPFGSLPVMLRSSYCVLHGLGDKDLIDLGECPYDQGGYFIVNGS 172

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKV++AQE+M++N VYVFKK QP  Y + AE+RS+ E  +R PST+ +++     A    
Sbjct: 173  EKVIVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGA---- 228

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
                IR +LP ++ +IP+ +++RALGF++DK+I++HI Y+  D +M ELL+ S+EE  V+
Sbjct: 229  ----IRVSLPLVKQDIPLFVLYRALGFLSDKEIIDHILYE-DDDEMFELLKESIEEGTVV 283

Query: 319  QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            Q+Q VALDYIGKR A VG  ++KRI  A+++L KE+LPH+GT +FCETKKAY+ GYI+ R
Sbjct: 284  QDQNVALDYIGKRSAPVGTPQEKRITIARDLLAKEVLPHIGTQEFCETKKAYFIGYIVQR 343

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LLL ALGRR  DDRDHYG KR+DL+GPLL  LFR LF+KL  D   ++QKC++NG++ N+
Sbjct: 344  LLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTTRHMQKCIENGREFNI 403

Query: 439  QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
               +KA  IT G +Y+LATGNWG QA A  TRAGV+QVLNR  + STLSHLRR+N+PI +
Sbjct: 404  ALGLKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEK 463

Query: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
            EGKLA PRQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI+VGS++ P++EFLEE G E
Sbjct: 464  EGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLEECGVE 523

Query: 558  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
            + EEIS   +  ATK+FVNG WVGIH DP  L+K+L+ LRR ++++ EV +VRDIR KE+
Sbjct: 524  SLEEISTLQLSTATKVFVNGVWVGIHSDPVYLIKSLKLLRRSLEIDKEVSIVRDIREKEI 583

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RI +D GR  RPL +V   +L+I   DI  L++ E      W +L+ +GFIE++D EEEE
Sbjct: 584  RIQSDAGRPCRPLMVVRDNKLVITIEDIRKLRRGEIK----WDNLIGEGFIEFLDVEEEE 639

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
             +MI+M+   ++            +YTHCEIHP+LILG+CAS IPFPDHNQSPRNTYQSA
Sbjct: 640  MSMIAMS-TKVLNDECKNSSDVKISYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSA 698

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMGIY TN+  RMDTL+ +L+YPQKPLVTT++ME+L F++LP+G NA+VAIACYSG
Sbjct: 699  MGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSG 758

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDS+IMNQS+IDRG FRS F+R+Y D+E      V E+F +P+R + + M++ +Y+K
Sbjct: 759  YNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPNRGSVLRMKNLNYNK 818

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTTPISQDE-AQGQASRYTRRDHSISLRHSETGMVDQVL 916
            LD+DGL  PG RV+G+DV+IGK TPI   E +  +A  Y  +D S ++R +ETG+VD V+
Sbjct: 819  LDEDGLISPGVRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVI 878

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            +T N DG +F KV++RS RIPQ+GDKF+SRH QKGT+G+T  QEDMP+T +GI PDII+N
Sbjct: 879  VT-NKDGYKFSKVKIRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIIN 937

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1036
            PHAIPSRMTIG LIEC++GKV+A  G+EGDATPF+ ++V+ IS  L   G+Q RG E MY
Sbjct: 938  PHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFSGMSVNEISTRLKSYGFQQRGLEVMY 997

Query: 1037 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1096
            NG TGR+L A IF GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEM
Sbjct: 998  NGMTGRKLRAQIFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1057

Query: 1097 ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQV 1156
            ERDC+I+HGAS FLKERL D SDAY  +VC  CGL+A+   K N  EC+GC N T++  V
Sbjct: 1058 ERDCIISHGASAFLKERLMDVSDAYSCYVCNLCGLLAMGGTKVN--ECKGCNNTTNVSMV 1115

Query: 1157 HIPYACKLLFQELMAMAIAPRMLTKE 1182
             IPYA KLL QELM M IAPR+  +E
Sbjct: 1116 EIPYAFKLLIQELMGMNIAPRIRFEE 1141


>gi|410932093|ref|XP_003979428.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like, partial
            [Takifugu rubripes]
          Length = 982

 Score = 1433 bits (3710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 682/987 (69%), Positives = 809/987 (81%), Gaps = 13/987 (1%)

Query: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGS 258
            VLIAQEKM+TN VYVF K+  +KYAY +E RS  E+ +RP ST++V M++R     K  +
Sbjct: 1    VLIAQEKMATNTVYVFAKKD-SKYAYTSECRSCLENSSRPTSTIWVSMMARGGQGVKKSA 59

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
             GQ I +TLPYIR E+PIIIVFRALGFV+D+DILEHI YDF D +MME+++PSL+EAFVI
Sbjct: 60   IGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 119

Query: 319  QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            Q Q VAL++IG RGA  GVT+++RIKYAKE+LQKEMLPHVG  DFCETKKAY+ GY++HR
Sbjct: 120  QEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHR 179

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L +++R Y QK +D GKD NL
Sbjct: 180  LLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNL 239

Query: 439  QFAIKAKTITSGLKYSLATGNWGQANAA-GTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
            + AIK + I+ GLKYSLATGNWG    A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR
Sbjct: 240  ELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGR 299

Query: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
            +GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  E
Sbjct: 300  DGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 359

Query: 558  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 616
            N EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV ++RDIR +E
Sbjct: 360  NLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE 419

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEE 676
            +RIYTD GR  RPL IVEKQ+LL+K+R I  L++RE   +  W DLVA G +EYIDT EE
Sbjct: 420  IRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEE 478

Query: 677  ETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
            ET M++MT +DL +  +    AY  TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQS
Sbjct: 479  ETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 534

Query: 737  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
            AMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+
Sbjct: 535  AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYT 594

Query: 797  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 856
            GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R    GMRH  Y+
Sbjct: 595  GYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYE 654

Query: 857  KLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQ 914
            KLDDDGL  PG RVSGEDVIIGKT   P ++DE +    RYT+RD S  LR SETG+VDQ
Sbjct: 655  KLDDDGLIAPGVRVSGEDVIIGKTVTLPDNEDELESTNRRYTKRDCSTFLRTSETGIVDQ 714

Query: 915  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 974
            V++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII
Sbjct: 715  VMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDII 774

Query: 975  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFE 1033
            +NPHAIPSRMT+G LIEC+ GKV+A+ G+ GDATPF D V V  +S  L + GY +RG E
Sbjct: 775  INPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNE 834

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
             +YNG TGR+LT+ IF+GPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGRSRDGGLRF
Sbjct: 835  VLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRF 894

Query: 1094 GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDI 1153
            GEMERDC IAHGA+ FLKERLF+ SD Y+VHVC  CGL+AIAN + +++ECRGC+NKT I
Sbjct: 895  GEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQI 954

Query: 1154 VQVHIPYACKLLFQELMAMAIAPRMLT 1180
              V +PYACKLLFQELM+M+IAPRM+T
Sbjct: 955  SLVRMPYACKLLFQELMSMSIAPRMMT 981


>gi|70794986|gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanthus californicus]
          Length = 733

 Score = 1433 bits (3710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/724 (95%), Positives = 705/724 (97%), Gaps = 3/724 (0%)

Query: 472  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 531
            VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN
Sbjct: 11   VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 70

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 591
            LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP+MLVK
Sbjct: 71   LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVK 130

Query: 592  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 651
            TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE QRLLIKKRDI ALQQR
Sbjct: 131  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVENQRLLIKKRDIQALQQR 190

Query: 652  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 711
            ESPEDGGWHDLV+KG+IEYIDTEEEETTMISMTINDLV AR + +EAY+DTYTHCEIHPS
Sbjct: 191  ESPEDGGWHDLVSKGYIEYIDTEEEETTMISMTINDLVSARANKKEAYSDTYTHCEIHPS 250

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT
Sbjct: 251  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 310

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            RAMEHLHFR+LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM
Sbjct: 311  RAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 370

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-- 889
            GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+ DEA   
Sbjct: 371  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAPDEATQG 430

Query: 890  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            G A+RYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ
Sbjct: 431  GPAARYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 490

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGTVGMTYTQEDMPWT+EGI PDIIVNPHAIPSRMTIGQLIECIMGKVAA MGKEGDATP
Sbjct: 491  KGTVGMTYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAXMGKEGDATP 550

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 1069
            FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL A IFLGPTYYQRLKHMVDDKIHSR
Sbjct: 551  FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAXIFLGPTYYQRLKHMVDDKIHSR 610

Query: 1070 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 1129
            GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE C
Sbjct: 611  GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERC 670

Query: 1130 GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKD 1189
            GL+AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRM+TK D KQ+KD
Sbjct: 671  GLVAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMMTK-DIKQAKD 729

Query: 1190 HKKK 1193
             KKK
Sbjct: 730  QKKK 733


>gi|403161549|ref|XP_003321874.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|375171826|gb|EFP77455.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1131

 Score = 1431 bits (3705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 705/1127 (62%), Positives = 859/1127 (76%), Gaps = 60/1127 (5%)

Query: 102  MTESDGETATLFPKAARLRNLTYSAPLYVDVTK-RVIKKGHDGEEVTET----------- 149
            MTESDG  + +FP  ARLRNLTYS+PLYVD++K   +  G   EE  E            
Sbjct: 1    MTESDGTVSPMFPNEARLRNLTYSSPLYVDMSKSNKLATGEFDEETGEPIYIADDVDNDE 60

Query: 150  QDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMS 209
            ++ T+++IGKVPIMLRS +C L +  +  L EL ECP+DQGGYF+INGSEKVLIAQE+M+
Sbjct: 61   KNSTQIYIGKVPIMLRSEFCILDKLEDPGLYELNECPFDQGGYFVINGSEKVLIAQERMA 120

Query: 210  TNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPY 269
             NHVYVF K  P             E  ++  S+M V+M     A+    G  I+ TLPY
Sbjct: 121  ANHVYVFAKAGP----------LAVEKGSKTVSSMQVKMYGGHKAEKAGGGATIKTTLPY 170

Query: 270  IRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIG 329
            IR +IPI++VFRALG + DKDILEHICYD  DT M E+L+P LE++F IQ Q+VALD+IG
Sbjct: 171  IRNDIPIVVVFRALGIIPDKDILEHICYDRNDTAMFEMLKPCLEDSFPIQEQEVALDFIG 230

Query: 330  KRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAE 389
            +RG   G++R+KR+KYA+EILQKEMLPH+   +  + KKAY+FGY+IHRLLL AL RR  
Sbjct: 231  RRGTATGLSREKRLKYAEEILQKEMLPHISMSEGQQGKKAYFFGYMIHRLLLAALDRRDL 290

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL GLFRMLFRKLT+DV  ++QKCV+  K  NL  A+K+ TIT+
Sbjct: 291  DDRDHFGKKRLDLAGPLLAGLFRMLFRKLTKDVYRHLQKCVEMQKPFNLNAAVKSNTITN 350

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  A   RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 351  GLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLH 410

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            NS WGM+CPAETPEGQACGLVKNLALM YI+VGS + PI+EFLEEWG E+ +E S + + 
Sbjct: 411  NSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEWGMESLDEFS-SDMS 469

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
              TK+FVNG W G+HR P  L+ T++RLRR  D+  EV V+RD+R +ELR++TD GR  R
Sbjct: 470  NGTKVFVNGVWQGVHRAPAELLDTIKRLRRCGDIEPEVSVMRDVRERELRVFTDGGRVCR 529

Query: 629  PLFIVEKQRLLIKKRDIIALQQ------------RESPEDG---GWHDLVAKGFIEYIDT 673
            PLFIVE Q+LL+KK  I  L               E+ +DG   GW  LVA+G +EY+D 
Sbjct: 530  PLFIVENQQLLLKKEHIEWLSNGCETAEEDQDAGEEAADDGVPFGWSQLVARGIVEYLDA 589

Query: 674  EEEETTMISMTINDLVQARLHPEEA-------------------YADTYTHCEIHPSLIL 714
            EEEET MI MT  +L Q+R + E                     Y+ T+THCEIHP++IL
Sbjct: 590  EEEETVMICMTPEELEQSREYQETGQVPKENYDPAARLKGNTSMYSHTWTHCEIHPAMIL 649

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            G+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN++ RMDT+A +LYYPQKPL TTR+M
Sbjct: 650  GICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFRTRMDTMANILYYPQKPLATTRSM 709

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS ++RSY D+EK+ G L
Sbjct: 710  EYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSFYYRSYMDQEKRAGAL 769

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 893
              E+F +P R +T+ ++HG+YDKLDDDG+  PGTRVSG+D+IIGKT PI +D E  GQ  
Sbjct: 770  QMEEFEKPTRDSTLRLKHGTYDKLDDDGIITPGTRVSGDDIIIGKTAPIPKDSEELGQRM 829

Query: 894  R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
            + +T+RD S+ L+ +E G++DQVL+TTN DGL+FVKVR+RS RIP+ GDKF+SRHGQKGT
Sbjct: 830  KTHTKRDVSMPLKSTENGIIDQVLVTTNQDGLKFVKVRIRSTRIPETGDKFASRHGQKGT 889

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            VG+ Y QEDMP+T EG+ PDII+NPHAIPSRMTIG L+EC++ KV+   G EGDATPF++
Sbjct: 890  VGILYRQEDMPFTSEGVCPDIIINPHAIPSRMTIGHLVECLLSKVSTITGNEGDATPFSE 949

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 1072
            VTV+ IS  L   GYQ RG E M+NGHTG++L A  +LGPTYYQRLKHMV+DKIHSR RG
Sbjct: 950  VTVEAISALLKDKGYQSRGLEIMFNGHTGKKLRAQCYLGPTYYQRLKHMVNDKIHSRARG 1009

Query: 1073 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 1132
            PVQILTRQP EGRSRDGGLRFGEMERDCMI+HG + FLKER+FD SDAYRVHVC+ CG++
Sbjct: 1010 PVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMFDVSDAYRVHVCDFCGMV 1069

Query: 1133 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            AIANLKK SFECR C+NKT I QV+IPYA KLLFQEL +M IA R +
Sbjct: 1070 AIANLKKQSFECRSCRNKTAISQVYIPYAAKLLFQELQSMNIASRFV 1116


>gi|169616566|ref|XP_001801698.1| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
 gi|160703211|gb|EAT81164.2| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
          Length = 1252

 Score = 1431 bits (3705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 702/1237 (56%), Positives = 892/1237 (72%), Gaps = 90/1237 (7%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            EIT ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+  + +   + ++P + S
Sbjct: 19   EITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDS 78

Query: 82   D-FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR----- 135
            D   +  Y+I FG++YL++P  TE DG T  LFP  ARLRNLTYS  +  D++ R     
Sbjct: 79   DPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAK 138

Query: 136  ---VIKKGHDGE-EVTET-----------------QDFTKVFIGKVPIMLRSSYCTLYQN 174
               V+ +G D + EVT T                 ++  +VFIGK+P+MLRS  C L   
Sbjct: 139  ETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQ 198

Query: 175  SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMA 234
            S++ L    ECPYDQGGYF+INGSEKVLIAQE+ + N V VF+K+Q N   + AE+RS  
Sbjct: 199  SDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGN-VPWTAEIRSAV 257

Query: 235  ESQNRPPSTMFVRMLSRTSAKGG----SSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            E   R  S+  ++    +    G    + G +  A LPYI+ E+P+ IVFRALG V+D++
Sbjct: 258  EKGTRLISSFNIKWADTSLGNPGQGKRAPGPFAYAMLPYIKQEVPMAIVFRALGIVSDEE 317

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            IL HI YD  DTQM+ELL+PS+EE  VIQ+++ ALD+I KRGA  G TRD+R+K+A++I+
Sbjct: 318  ILSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIM 376

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            QK+              K  +FGY+IHRLL C LGRR EDDRDH+G KRLDLAGPL+  L
Sbjct: 377  QKDK----------TLAKPTFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANL 426

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FR+LF KLT+DV  Y+Q+CV++  D N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +
Sbjct: 427  FRILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAK 486

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CPAETPEGQACGLV
Sbjct: 487  AGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLV 546

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNL+LM Y++VGS A PI++F+ +   +  EE      P+ATK+FVNG WVG+H   + L
Sbjct: 547  KNLSLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQL 606

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKR 643
            V  ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE       +  L+  R
Sbjct: 607  VSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQLVFDR 666

Query: 644  DI---IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEEETTMISMTINDL 688
            +I   +  +Q +S    GW D            L+  G IEY+D EEEET MI+ +  DL
Sbjct: 667  EISNRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDL 726

Query: 689  VQ---------------------ARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +                      R+ P+ +     YTHCEIHP++ILG+CASIIPFPDH
Sbjct: 727  DEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDH 786

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG 
Sbjct: 787  NQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQ 846

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  V E F +P R++
Sbjct: 847  NAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRAD 906

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISL 904
            T+ ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D  E   + + +T+RD S  L
Sbjct: 907  TLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKRDVSTPL 966

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            R +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+
Sbjct: 967  RSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPF 1026

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1024
            T EG+TPD+++NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFT+VTVD IS  L +
Sbjct: 1027 TSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEISDLLEQ 1086

Query: 1025 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1084
             GYQ RGFE MYNGHTG+++   +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EG
Sbjct: 1087 AGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEG 1146

Query: 1085 RSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFE 1143
            R+RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL++ IA++KK  +E
Sbjct: 1147 RARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASIKKGMYE 1206

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CR C NKT I Q+HIPYA KLLFQEL+AM IA RM T
Sbjct: 1207 CRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRMFT 1243


>gi|154304837|ref|XP_001552822.1| hypothetical protein BC1G_09004 [Botryotinia fuckeliana B05.10]
          Length = 1207

 Score = 1423 bits (3684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 696/1204 (57%), Positives = 888/1204 (73%), Gaps = 81/1204 (6%)

Query: 7    DYEEQHQQEEEDEEEE-ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            DYEE ++ ++  EE+  IT ED W VIS++FE KGLV QQLDSFDEF+Q TMQE+V+E++
Sbjct: 3    DYEEGYEYDDYGEEDAGITAEDCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENS 62

Query: 66   DIEIRPESQHNPGQQSD--FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
             + +    Q+NP    D   A   Y+I FG I LS+P MTE DG T  + P+ ARLRNLT
Sbjct: 63   QLTL---DQNNPPSSHDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLT 119

Query: 124  YSAPLYVDVTK---------------------RVIKKG-HDGEEVTETQDFT-------- 153
            YS+PLY+++TK                      ++  G H    V E +D          
Sbjct: 120  YSSPLYIEMTKSTQVAVERPVPLNELDDEQEAEMVNGGEHPTRLVWEYEDGDPEGPKGAP 179

Query: 154  ---KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMST 210
               +V+IGK+P+ML+S +C L    E +L    ECPYDQGGYFIINGSEKVLIAQE+ + 
Sbjct: 180  LPEQVYIGKLPMMLKSEFCILKGLDEDELYGWNECPYDQGGYFIINGSEKVLIAQERSAA 239

Query: 211  NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYI 270
            N V VFKK   +  +Y+AE+RS  E  +R  S++ +++  +  +  G  G+ +++TLPYI
Sbjct: 240  NIVQVFKKPANSAVSYLAEIRSALEKGSRLISSLQIKLYDKGDSNRGGFGKTVKSTLPYI 299

Query: 271  RTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGK 330
            + +IPI IVFRALG V+D+DIL HICYD  DTQM+E+L+P +EEAFVIQ+++VALD+IGK
Sbjct: 300  KADIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALDFIGK 359

Query: 331  RGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 390
            RG    +TRDKRIKYA++I+QKE+LPH+   +  ET+KA++ GY++H+LL CALGRR  D
Sbjct: 360  RGNGTSLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETD 419

Query: 391  DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSG 450
            DRDH+G KRLDLAGPLL  LFR LFR+LT DV  Y+Q+CV+N ++ NL   +K+ TIT+G
Sbjct: 420  DRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNG 479

Query: 451  LKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 509
            LKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN
Sbjct: 480  LKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHN 539

Query: 510  SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ 569
            + WG++CPAETPEGQACGLVKNLALM Y+TVG+ + PI+EF+ +   E  EE  P   P 
Sbjct: 540  THWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPN 599

Query: 570  ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRP 629
            ATK+FVNG WVGIHRDP  LVK ++ LRR   ++ EV ++R+IR +E +I+TD GR  RP
Sbjct: 600  ATKVFVNGVWVGIHRDPAHLVKCVQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRP 659

Query: 630  LFIVE-------KQRLLIKKRDIIALQ----------QRESPEDG--GWHDLVAKGFIEY 670
            L +++       K  L++ K  I  L+          + E   +G  G+  L+  G +EY
Sbjct: 660  LLVIDNDPDSANKGNLVLNKDHIRRLEDDQLLPANMDKDEKVRNGYYGFQGLINDGVVEY 719

Query: 671  IDTEEEETTMISMTINDLVQAR-------LHPEEA-------------YADTYTHCEIHP 710
            +D EEEET MI+MT  DL  +R       + P+E+              A  +THCEIHP
Sbjct: 720  LDAEEEETVMITMTPEDLDISRQLQAGYQIRPDESGDLNKRVKAPINPTAHVWTHCEIHP 779

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRN YQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL T
Sbjct: 780  SMILGICASIIPFPDHNQSPRNCYQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLAT 839

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK+
Sbjct: 840  TRSMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKR 899

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
            +G  V E F +P RS+T+ ++ G+YDKLDDDG+  PG RV+G D+IIGKT PI+ D E  
Sbjct: 900  IGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVAPGVRVTGADIIIGKTAPIAPDSEEM 959

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ ++ + +RD S  LR +E+G+VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 960  GQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 1019

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY Q+DMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV+   G EGDAT
Sbjct: 1020 QKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDAT 1079

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            PFT+VTVD++SK L   GY  RGFE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKIH+
Sbjct: 1080 PFTEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHA 1139

Query: 1069 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 1128
            R RGPVQILTRQP EGR+RDGGLRFGEMERDCMI+HGAS FLKERLF+ SDA+RVH+C+ 
Sbjct: 1140 RARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAFRVHICDI 1199

Query: 1129 CGLI 1132
            CGL+
Sbjct: 1200 CGLM 1203


>gi|336265263|ref|XP_003347404.1| hypothetical protein SMAC_08679 [Sordaria macrospora k-hell]
 gi|380087481|emb|CCC14221.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1274

 Score = 1423 bits (3684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 716/1262 (56%), Positives = 897/1262 (71%), Gaps = 99/1262 (7%)

Query: 3    EDDYDYEEQHQQEEEDEEEE---ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQE 59
            ++D +YE     ++ED+  +   IT ED+W VIS+YF+ KGLV QQ+DSF+EF  +T+Q 
Sbjct: 20   DNDDNYENLSTFDDEDDGSDPNAITPEDSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQS 79

Query: 60   IVDESADIEI-RPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 118
            ++DE AD+ +  P    + G+  D     Y + FG+I +S+P +TE+ GET +L P   R
Sbjct: 80   LIDEYADLTLDHPSPGDDDGR--DIILRRYDVHFGEIIISRPTLTEATGETISLLPYECR 137

Query: 119  LRNLTYSAPLYVDVTKR-------------VIKKGHD-----GEEVTETQDFTK------ 154
             RNLTYSAP+Y  VTKR             +    HD     GE  T  +   +      
Sbjct: 138  DRNLTYSAPIYCKVTKRARIAVSEKKPLNQLTDDEHDHMARTGEHPTVLRWIEEESAPPE 197

Query: 155  ---------------VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
                           +F+GK+PIM++S  C LY   ++ L  L ECPYDQGGYFIINGSE
Sbjct: 198  PPKEDKVNAENLKGYLFLGKIPIMVKSKICHLYMEDDESLFTLNECPYDQGGYFIINGSE 257

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
            KVLIAQE+ + N V VFKK      +Y AE+RS  E  +R  S++ +R+ ++     G  
Sbjct: 258  KVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKADQNKGRL 317

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
               +  TLPY++ E+ + IVFRALG V+D+DIL HICYD +D+QM+E LRP +EEAF IQ
Sbjct: 318  ANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQ 377

Query: 320  NQQVALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            +++VALDYIGKRG    GV R+ RIK AK++LQKE+LPH+   + CET+KA++ GY++H+
Sbjct: 378  DREVALDYIGKRGNGGAGVNRNARIKAAKDMLQKELLPHISQAEGCETRKAFFLGYMVHK 437

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LL C LGRR  DDRDH+G KRLDLAGPLL  LFR + R+LT+D+  Y+++CVD  K  +L
Sbjct: 438  LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHFSL 497

Query: 439  QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
               IKA T+T+GLKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PIGR
Sbjct: 498  ALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 557

Query: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
            +GKLAKP              ETPEGQACGLVKNL+LM +++VG+ A PI+EF+     E
Sbjct: 558  DGKLAKP-------------PETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMVARNME 604

Query: 558  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
              EE  P   P ATK+FVNG WVG+H+DP+ LV  ++ LRR+  ++ EV +VRDIR +E 
Sbjct: 605  VLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQNLRRKNIISFEVSLVRDIRDREF 664

Query: 618  RIYTDYGRCSRPLFIVE----------KQRLLIKKRDIIALQQRES----PED-GGWHDL 662
            +I++D GR  RPLF VE          K +L++ K  I  L+Q +      ED  GW  L
Sbjct: 665  KIFSDAGRVMRPLFTVEQEDNGESGVEKGQLILTKEHIRRLEQDKELGKYHEDYFGWQGL 724

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHP------EEAYAD--------------- 701
            +  G IEY+D EEEET MI MT  DL   R H       E+  A+               
Sbjct: 725  LESGAIEYLDAEEEETAMICMTPEDLDTYRQHKFKGREFEDDAANRGNSRIKTKFNPTTH 784

Query: 702  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
             YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +L
Sbjct: 785  MYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANIL 844

Query: 762  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
            YYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFF
Sbjct: 845  YYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFF 904

Query: 822  RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
            RSY D EK++G  + E F +PDRSNT+  +HG+YDKL++DG+  PG RV+G+D+IIGKT+
Sbjct: 905  RSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGKTS 964

Query: 882  PISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            PI+ D  + GQ  +++ +RD S  LR +E+G+VD V  TTN DGLR+VKVRVR+ +IPQI
Sbjct: 965  PINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTKIPQI 1024

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV +
Sbjct: 1025 GDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVGS 1084

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
              G EGDATPFTDVTVD++S  L + GYQ RGFE MY+GHTGR+L A +F GPTYYQRL+
Sbjct: 1085 LKGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEIMYHGHTGRKLRAQVFFGPTYYQRLR 1144

Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
            HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SD
Sbjct: 1145 HMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSD 1204

Query: 1120 AYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
            A+RVH+CE CGL+  IANL K SFECR CKNKT I QVH+PYA KLLFQELM+M IA RM
Sbjct: 1205 AFRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSMNIASRM 1264

Query: 1179 LT 1180
             T
Sbjct: 1265 FT 1266


>gi|426344421|ref|XP_004038768.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gorilla
            gorilla gorilla]
          Length = 1097

 Score = 1422 bits (3681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 714/1153 (61%), Positives = 860/1153 (74%), Gaps = 79/1153 (6%)

Query: 33   SAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISF 92
            S+YF+EKGLVRQQLDSFDEFIQ ++Q IV+++  I+++ E+QH  G+  +     Y + F
Sbjct: 18   SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPR--YLLKF 75

Query: 93   GQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDF 152
             QIYLSKP   E DG  + + P  ARLRNLTYSAPLYVD+TK VIK   +GEE  +TQ  
Sbjct: 76   EQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIK---EGEEQLQTQ-H 131

Query: 153  TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH 212
             K FIGK+PIMLRS+YC L   +++DL EL ECP D GGYFIINGSEKVLIAQEKM+TN 
Sbjct: 132  QKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNT 191

Query: 213  VYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRT 272
            VYVF K+  +KYAY  E RS  E+ +RP ST++V ML+R    GG   +           
Sbjct: 192  VYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLAR----GGQGAKK---------- 236

Query: 273  EIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRG 332
                     A+G    + I+  + Y  Q+  ++ + R              AL ++  R 
Sbjct: 237  --------SAIG----QRIVATLPYIKQEVPIIIVFR--------------ALGFVSDR- 269

Query: 333  ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDR 392
                                ++L H+   DF + +      Y++HRLLL ALGRR  DDR
Sbjct: 270  --------------------DILEHI-IYDFEDPEMMEMVIYMVHRLLLAALGRRELDDR 308

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK +D GKD NL+ AIK + I+ GLK
Sbjct: 309  DHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLK 368

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ 
Sbjct: 369  YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTL 428

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN EEISPA I  AT
Sbjct: 429  WGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADAT 488

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPL 630
            KIFVNGCWVGIH+DPE L+ TLR+LRR++D+  +EV ++RDIR +E+RIYTD GR  RPL
Sbjct: 489  KIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPL 548

Query: 631  FIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 690
             IVEKQ+LL+KKR I  L++RE   +  W DLVA G +EYIDT EEET M++MT +DL +
Sbjct: 549  LIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQE 607

Query: 691  ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 750
                 E AY  TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+
Sbjct: 608  K----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 663

Query: 751  QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 810
              RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+GYNQEDSVIMN+S+
Sbjct: 664  HVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSA 723

Query: 811  IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 870
            +DRGFFRS+F+RSY+++E K G   +E F +P R    GMRH  YDKLDDDGL  PG RV
Sbjct: 724  VDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRV 783

Query: 871  SGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 928
            SG+DVIIGKT   P ++DE +    RYT+RD S  LR SETG+VDQV++T N +G +F K
Sbjct: 784  SGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCK 843

Query: 929  VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
            +RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGITPDII+NPHAIPSRMTIG 
Sbjct: 844  IRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGH 903

Query: 989  LIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1047
            LIEC+ GKV+A+ G+ GDATPF D V V  IS  L   GY +RG E +YNG TGR++T+ 
Sbjct: 904  LIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQ 963

Query: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAS 1107
            IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDGGLRFGEMERDC IAHGA+
Sbjct: 964  IFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAA 1023

Query: 1108 HFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQ 1167
             FL+ERLF+ SD Y+VHVC  CG++AIAN + +++ECRGC+NKT I  V +PYACKLLFQ
Sbjct: 1024 QFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQ 1083

Query: 1168 ELMAMAIAPRMLT 1180
            ELM+M+IAPRM++
Sbjct: 1084 ELMSMSIAPRMMS 1096


>gi|401407224|ref|XP_003883061.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
 gi|325117477|emb|CBZ53029.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
          Length = 1260

 Score = 1422 bits (3680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 686/1195 (57%), Positives = 887/1195 (74%), Gaps = 27/1195 (2%)

Query: 7    DYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            D EE  ++ +E ++  + Q+  WAV+S++F   GLV QQL+SF++F+   +QEI+DE   
Sbjct: 71   DDEESGERGDEGDQSPVDQDACWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPP 130

Query: 67   IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
            IEI+P  Q+ P ++ + +  IY++   Q+ L++P + E +G +  L+P  AR RNLTYS+
Sbjct: 131  IEIKPTPQYRPEEEVE-SNVIYRLKMDQLSLNRPSVEEKEGISKHLWPYEARTRNLTYSS 189

Query: 127  PLYVDV--TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 184
            PLYVDV  T   +      E + +   +++V +G++P+ML+S+YC      E DL ++GE
Sbjct: 190  PLYVDVEQTTYTVDPETGVERLVDQVTYSRVLLGRIPMMLKSAYCWTKDLPEHDLADVGE 249

Query: 185  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTM 244
            C YDQGGYFIING EKVL+AQE+M++N VYVF+K+QP+K+ +VAEVRS  E   +  S  
Sbjct: 250  CAYDQGGYFIINGGEKVLVAQERMASNFVYVFQKKQPSKFGWVAEVRSQKEGM-QATSGF 308

Query: 245  FVRMLSRTS----AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ 300
             V+  SRT     AKGG  G  I A LPYIRTEIPI+I+FRALG ++D+DIL  + YD +
Sbjct: 309  AVKKRSRTGEGRGAKGGRPGGQIVAALPYIRTEIPIVILFRALGCISDRDILLRVAYDLK 368

Query: 301  DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGT 360
            D Q++ L++PSLEE F   +Q V LD+IGKRG TVG  R+KRI+YA+E+L+KE+LPHVGT
Sbjct: 369  DPQLISLMKPSLEEGFDYGSQDVCLDFIGKRGPTVGAQREKRIQYARELLRKEVLPHVGT 428

Query: 361  GDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
               CE KKA++ GY++HRLLL  LGR  +DDRDH+G KRLD+AGPL+   F  L+RK+ +
Sbjct: 429  EAGCENKKAFFIGYMVHRLLLADLGRINQDDRDHFGKKRLDMAGPLIAASFGTLYRKMIK 488

Query: 421  DVRAYVQKCVDNGKDVNLQFAIK-AKTITSGLKYSLATGNWGQANAAG-TRAGVSQVLNR 478
            DVR  +Q+ VD+GK  ++  AI+ A  IT GL+Y +ATGNWG+       R GV+QVLNR
Sbjct: 489  DVRRILQRQVDHGKSFDVAGAIRSASQITQGLQYQIATGNWGKDKEGKIVRTGVAQVLNR 548

Query: 479  LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
            LT+AS LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM  I
Sbjct: 549  LTFASALSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMSDI 608

Query: 539  TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRR 598
            +VGSA   + EFL EWG +  EE++P VI +  K+FVNG WVG   + ++L +TLR+LRR
Sbjct: 609  SVGSATNTVHEFLVEWGLDPLEEMTPDVIKERVKVFVNGSWVGCFDEADVLCQTLRQLRR 668

Query: 599  RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIALQQRESPEDG 657
            R D+++E  +VRD+  +E++I+TD GR  RPLF+V E  R L+ KR  +   QR   ++ 
Sbjct: 669  RCDISSETSIVRDLVNREVKIFTDAGRAMRPLFVVDEGTRDLVMKRGHLEELQRRGKDEK 728

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVC 717
             W  L+ KG IE++D EEEET MI+M + D+       E+  A  YTHCEIHPSLILGVC
Sbjct: 729  SWGYLMEKGIIEFVDCEEEETCMIAMFVEDI-----RSEKRLAFPYTHCEIHPSLILGVC 783

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRN YQSAMGKQAMG+Y +++  RMDTLA++LYYPQKPLV TRAME L
Sbjct: 784  ASIIPFPDHNQSPRNVYQSAMGKQAMGVYTSSFNHRMDTLAHLLYYPQKPLVCTRAMEFL 843

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
             FR+LPAGINAIVAI CYSGYNQEDS+IM+QSSIDRG FRS+F+R+Y  EE++ G+L+ E
Sbjct: 844  RFRELPAGINAIVAILCYSGYNQEDSLIMSQSSIDRGLFRSVFYRTYCSEERQQGSLMVE 903

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEA--------- 888
             F  P   +  GM+ G Y KLD DGL  PG+RV G+DVIIGKT+PI  D+A         
Sbjct: 904  SFEPPSIEHVQGMKRGDYSKLDADGLVEPGSRVLGDDVIIGKTSPIFDDDAGMPGAAAGI 963

Query: 889  QGQASRYTRR--DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 946
             G  S + +R  D S+ LR SETG+VDQV+L+ N+ G RF KV+VRSVRIPQ GDKF+SR
Sbjct: 964  AGVPSPFAKRKRDCSLCLRSSETGVVDQVMLSVNSRGSRFTKVKVRSVRIPQTGDKFASR 1023

Query: 947  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
            HGQKGT+G+TY  EDMP+  EGITPD+I+NPHA+PSRMTIG L+EC++GK AA  G EGD
Sbjct: 1024 HGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTIGHLVECLLGKTAAIFGGEGD 1083

Query: 1007 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            ATPF    V +IS  LH  GY+  G E +Y+GHTGR L +++F GPTYYQRLKHMVDDKI
Sbjct: 1084 ATPFNGYAVLDISNRLHSLGYERFGNERLYHGHTGRHLPSLVFFGPTYYQRLKHMVDDKI 1143

Query: 1067 HSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVC 1126
            H+R RGPV +LTRQP EG+SR+GGLRFGEMERDCMI+HGA+H LKERLF+QSDAYRVHVC
Sbjct: 1144 HARARGPVTMLTRQPMEGKSREGGLRFGEMERDCMISHGAAHMLKERLFEQSDAYRVHVC 1203

Query: 1127 EHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            + CGL+  A+L + +FEC+ C NK+ I Q+ IPYACKLL QELM M I PR++ +
Sbjct: 1204 DICGLVCTADLSRGNFECKLCDNKSRISQICIPYACKLLLQELMTMCIYPRLVLQ 1258


>gi|325092558|gb|EGC45868.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus H88]
          Length = 1307

 Score = 1419 bits (3674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 692/1188 (58%), Positives = 869/1188 (73%), Gaps = 72/1188 (6%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            D++E IT ED W VIS++FE KGLV QQLDSFDEFI  TMQE+V+E   + +        
Sbjct: 117  DQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAE 176

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV- 136
             +        Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY++PLY+ +TKRV 
Sbjct: 177  DEIDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 236

Query: 137  ------IKKGHDGEEVTETQDFTK-----------------------VFIGKVPIMLRSS 167
                  I +  D E+  E  D  +                       VFIG++PIML+S 
Sbjct: 237  EGRERLIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 296

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
            YC L   +E+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK  P+   YV
Sbjct: 297  YCILKDLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYV 356

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AE+RS  E  +R  S + +++  +     G  G  IR+TLPYI+T+IPI++VFRALG V+
Sbjct: 357  AEIRSAVEKGSRILSQLSIKLFGKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVS 416

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDKRIKYA 346
            D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++   +  +KR++YA
Sbjct: 417  DEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYA 476

Query: 347  KEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 406
            ++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPL
Sbjct: 477  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 536

Query: 407  LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANA 465
            L  LFR+LF ++T+D+  YVQ+CV+  + + L   +KA T++SGLKY+LATGNWG Q  A
Sbjct: 537  LANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSSGLKYALATGNWGEQKKA 596

Query: 466  AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQA 525
            A ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQA
Sbjct: 597  ASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 656

Query: 526  CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRD 585
            CGLVKNLALM  ITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRD
Sbjct: 657  CGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRD 716

Query: 586  PEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RL 638
            P  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE          L
Sbjct: 717  PSHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSL 776

Query: 639  LIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTIND 687
            ++ K  I  L+  +E P D           GW  LV  G +EY+D EEEET MI MT  D
Sbjct: 777  VLSKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPED 836

Query: 688  L-----VQARLH-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHN 727
            L     +QA    PEE   D              T+THCEIHPS+ILG+CASIIPFPDHN
Sbjct: 837  LETSKQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHN 896

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG N
Sbjct: 897  QSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQN 956

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T
Sbjct: 957  AIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDT 1016

Query: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLR 905
            + M+HG+YDK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR
Sbjct: 1017 LRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKIDVSTPLR 1076

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
             +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 1077 STESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFT 1136

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
             EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS  L + 
Sbjct: 1137 REGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISSLLREH 1196

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GYQ RGFE MYNG+TGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR
Sbjct: 1197 GYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGR 1256

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
            +RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+ 
Sbjct: 1257 ARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMT 1304


>gi|398404063|ref|XP_003853498.1| DNA-directed RNA polymerase II subunit RPB2 [Zymoseptoria tritici
            IPO323]
 gi|339473380|gb|EGP88474.1| hypothetical protein MYCGRDRAFT_99853 [Zymoseptoria tritici IPO323]
          Length = 1231

 Score = 1418 bits (3670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 708/1234 (57%), Positives = 883/1234 (71%), Gaps = 88/1234 (7%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            IT ED W VI ++F+EKGLV QQLDSFDEF   TMQ+IVD+   I I    Q+  G   +
Sbjct: 2    ITAEDCWTVIHSFFDEKGLVSQQLDSFDEFASTTMQQIVDDQPAIVI---DQNLAGLDEE 58

Query: 83   FAETIYK----ISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR--- 135
                I K    I  G + +S+  MTE DG T  + P  ARLRNLTYS+P+++ + K    
Sbjct: 59   SGMPIVKKRSSIKLGTLTVSQAAMTEGDGSTRAMHPHEARLRNLTYSSPMFIKLEKTTQL 118

Query: 136  -----------------VIKKGHDG--EEVTE------TQDFTKVFIGKVPIMLRSSYCT 170
                             V     DG  E V E       Q   +VFIGK+P+ML+S  C 
Sbjct: 119  ARERALGGHYDEDQGMWVAPPNWDGTVETVWEEDPDNPKQAIDQVFIGKLPVMLKSKICA 178

Query: 171  LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 230
            L   SE +L    ECP+DQGGYFIINGSEKVLIAQE+ + N V VF+K+  N    VAE+
Sbjct: 179  LRNRSEAELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFRKKGTNT-PVVAEL 237

Query: 231  RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            RS  E   R  S+M V++ ++  A    SGQ I+ +LPYIR ++PI IVFRA+G V+D+D
Sbjct: 238  RSAVERGTRLISSMQVKLCNQAVA-AQHSGQTIKVSLPYIRADVPIAIVFRAMGVVSDED 296

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            IL HIC + +DTQM E L+P LEEAFVIQ+  VALD+IG+RG   G T+D+RI+YA++I+
Sbjct: 297  ILAHICPE-EDTQMREKLKPCLEEAFVIQDHDVALDHIGRRGQQQG-TKDRRIRYARDIM 354

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            QKE LPH+   +  ETKKA++ GY+++R+L CALGR  EDDRDH+G KRLDLAGPL+  +
Sbjct: 355  QKEFLPHISQEEGSETKKAFFLGYMVNRMLQCALGRTEEDDRDHFGKKRLDLAGPLMAQV 414

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FR+ F++L +D+R Y+ +CV+ GKD N+  A+K   ITSGL+Y LATGNWG Q  AA  +
Sbjct: 415  FRLKFQQLVKDMRQYLHRCVETGKDFNIALAVKTNIITSGLRYCLATGNWGDQKKAASAK 474

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLV
Sbjct: 475  AGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 534

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNL+LM Y+TVG+   PI++F+ + G +  EE  P  +  ATK+F+NG WVG+H+    L
Sbjct: 535  KNLSLMCYVTVGTPGEPIVDFMRQRGMDLLEEHDPNQVKDATKVFLNGTWVGVHKSAGQL 594

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-------EKQRLLIKK 642
             +TLR+LRR+  ++ EV ++RD+R +E+R++TD GR  RPLF+V       E   L++K+
Sbjct: 595  TETLRQLRRKGLLSFEVTIIRDVREREIRVFTDAGRVCRPLFVVDNNPKSLEPGTLMLKQ 654

Query: 643  RDIIALQQRE---------SPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
              +  L Q +         S ED      GW  LV  G +EY+D EEEE  MI MT  DL
Sbjct: 655  DHVERLHQDQELLASLEGVSEEDREQQLFGWKGLVTSGVVEYLDAEEEEVAMIIMTPEDL 714

Query: 689  VQAR-----LHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 729
             + R     +  EE   D              TYTHCEIHP++ILG+CASIIPFPDHNQS
Sbjct: 715  EEHRVMRNGMAVEELKVDPHRRIKPKPNPQVRTYTHCEIHPAMILGICASIIPFPDHNQS 774

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQ+ MG     + +TNY  RMDT+A VLYYPQKPL TTR+ME L FR LPAG NAI
Sbjct: 775  PRNTYQATMG-----VTLTNYNVRMDTMANVLYYPQKPLATTRSMEFLKFRDLPAGQNAI 829

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P RS+TM 
Sbjct: 830  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVESFEKPTRSDTMR 889

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 907
            M+HG+YDKLD+DG+  PG RVSG D++IGKT P+  D E  GQ ++ + +RD S  LR +
Sbjct: 890  MQHGTYDKLDEDGIISPGARVSGTDILIGKTAPMPPDAEELGQRTKLHVKRDVSTPLRST 949

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E G+VDQVLLTTN +GLRFVKVR R  ++PQIGDKF+SRHGQKGT+G+TY QEDMP++ +
Sbjct: 950  ENGVVDQVLLTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSAD 1009

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            G+TPDII+NPHAIPSRMTI  LIEC++ KV A  G+EGDATPFT+VTV +IS+ L   G+
Sbjct: 1010 GLTPDIIINPHAIPSRMTIAHLIECLLSKVGALQGQEGDATPFTEVTVTSISEILKSNGF 1069

Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1087
            Q RGFE MYNGHTG++L A +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+R
Sbjct: 1070 QQRGFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 1129

Query: 1088 DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRG 1146
            DGGLRFGEMERDCMIAHGAS FLKERL D SDA+RVH+CE CGL+  IA++KK  FECR 
Sbjct: 1130 DGGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICELCGLMTPIASIKKQQFECRP 1189

Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CKNKT I Q+ IPYA KLLFQEL AM +A RM T
Sbjct: 1190 CKNKTKIAQIIIPYAAKLLFQELAAMNVATRMFT 1223


>gi|68131856|gb|AAY85206.1| RNA polymerase II second largest subunit [Embothrium coccineum]
          Length = 706

 Score = 1417 bits (3669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 671/706 (95%), Positives = 693/706 (98%)

Query: 108 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
           ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD EEVTETQDF KVFIGKVPIMLRSS
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFAKVFIGKVPIMLRSS 60

Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
           YCT+YQNSEKDLTELGECP+DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN+YAYV
Sbjct: 61  YCTVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNRYAYV 120

Query: 228 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            EVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121 GEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288 DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
           DKDILEHICYDF DTQMM LLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAK
Sbjct: 181 DKDILEHICYDFSDTQMMGLLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240

Query: 348 EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
           EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 300

Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
           GGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
           TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420

Query: 528 LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
           LVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPE 480

Query: 588 MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
           +LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIV+KQRLLIKK+D+ A
Sbjct: 481 LLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVDKQRLLIKKKDVRA 540

Query: 648 LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCE 707
           LQQRESP+DGGWHDLVAKGFIEYIDTEEEETTMISMTINDL+ ARLHPEEAY++TYTHCE
Sbjct: 541 LQQRESPDDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLISARLHPEEAYSETYTHCE 600

Query: 708 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
           IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKP
Sbjct: 601 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 660

Query: 768 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
           LVTTRAMEHLHFRQLPAGIN+IVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 661 LVTTRAMEHLHFRQLPAGINSIVAIACYSGYNQEDSVIMNQSSIDR 706


>gi|225562623|gb|EEH10902.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus
            G186AR]
          Length = 1307

 Score = 1415 bits (3664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 690/1188 (58%), Positives = 868/1188 (73%), Gaps = 72/1188 (6%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            D++E IT ED W VIS++FE KGLV QQLDSFDEFI  TMQE+V+E   + +        
Sbjct: 117  DQDEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAE 176

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV- 136
             +        Y++ FG + L++P +TE DG T+ + P+ ARLRNLTY++PLY+ +TKRV 
Sbjct: 177  DEIDPVVLRRYELKFGTVMLARPSVTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVT 236

Query: 137  ------IKKGHDGEEVTETQDFTK-----------------------VFIGKVPIMLRSS 167
                  I +  D E+  E  D  +                       VFIG++PIML+S 
Sbjct: 237  EGRERLIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSK 296

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
            YC L   +E+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK  P+   YV
Sbjct: 297  YCILKDLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYV 356

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AE+RS  E  +R  S + +++  +     G  G  IR+TLPYI+T+IPI++VFRALG V+
Sbjct: 357  AEIRSAVEKGSRILSQLSIKLFGKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVS 416

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDKRIKYA 346
            D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++   +  +KR++YA
Sbjct: 417  DEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYA 476

Query: 347  KEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 406
            ++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPL
Sbjct: 477  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 536

Query: 407  LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANA 465
            L  LFR+LF ++T+D+  YVQ+CV+  + + L   +KA T++ GLKY+LATGNWG Q  A
Sbjct: 537  LANLFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKA 596

Query: 466  AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQA 525
            A ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQA
Sbjct: 597  ASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 656

Query: 526  CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRD 585
            CGLVKNLALM  ITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRD
Sbjct: 657  CGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRD 716

Query: 586  PEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RL 638
            P  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE          L
Sbjct: 717  PSHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSL 776

Query: 639  LIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTIND 687
            ++ K  I  L+  +E P D           GW  LV  G +EY+D EEEET MI MT  D
Sbjct: 777  VLSKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPED 836

Query: 688  L-----VQARLH-PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHN 727
            L     +QA    PEE   D              T+THCEIHPS+ILG+CASIIPFPDHN
Sbjct: 837  LETSKQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHN 896

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG N
Sbjct: 897  QSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQN 956

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T
Sbjct: 957  AIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPMRSDT 1016

Query: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLR 905
            + M+HG+YDK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++ +T+ D S  LR
Sbjct: 1017 LRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHTKIDVSTPLR 1076

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
             +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 1077 STESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFT 1136

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
             EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+IS  L + 
Sbjct: 1137 REGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDSISSLLREH 1196

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GYQ RGFE MYNG+TGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR
Sbjct: 1197 GYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGR 1256

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
            +RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+ 
Sbjct: 1257 ARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICGLMT 1304


>gi|302668317|ref|XP_003025731.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
 gi|291189857|gb|EFE45120.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
          Length = 1205

 Score = 1415 bits (3662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/1193 (57%), Positives = 872/1193 (73%), Gaps = 81/1193 (6%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            + EE IT ED W VISA+FE KGLV QQLDSFDEFI  TMQE+V+E   + +      + 
Sbjct: 14   ETEEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSD 73

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
             +        Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY++PLY+ ++K+++
Sbjct: 74   DEPDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIM 133

Query: 138  KKGHDGEE-----------------------------------VTETQDFTKVFIGKVPI 162
                +G E                                   + +  +   +FIGK+PI
Sbjct: 134  ----EGRERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPI 189

Query: 163  MLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 222
            ML+S YC L    E+ L    ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+
Sbjct: 190  MLKSKYCILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPS 249

Query: 223  KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRA 282
               YVAE+RS  E  +R  S + +++ S+  +  G  G  IR+TLPYI+T+IPI++VFRA
Sbjct: 250  PTPYVAEIRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRA 309

Query: 283  LGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDK 341
            LG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++ + + ++K
Sbjct: 310  LGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEK 369

Query: 342  RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
            R++YA++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLD
Sbjct: 370  RVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLD 429

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
            LAGPLL  LFR+LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG
Sbjct: 430  LAGPLLANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWG 489

Query: 462  -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 520
             Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 490  EQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 549

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WV
Sbjct: 550  PEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWV 609

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 636
            G+HRDP  LV T++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 637  ---RLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMIS 682
                L++ K  I  L+  +E P D           GW  LV  G IEY+D EEEET MI 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIV 729

Query: 683  MTINDLVQARLH------PEEAYAD--------------TYTHCEIHPSLILGVCASIIP 722
            MT  DL  ++ +      PEE   D              T+THCEIHPS+ILG+CASIIP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P
Sbjct: 850  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKP 909

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 900
             RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D 
Sbjct: 910  MRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDV 969

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  E
Sbjct: 970  STPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHE 1029

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
            DMP+T EG+TPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S 
Sbjct: 1030 DMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSS 1089

Query: 1021 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080
             L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQ
Sbjct: 1090 LLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQ 1149

Query: 1081 PAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
            P EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+CE CGL+ 
Sbjct: 1150 PVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICEICGLMT 1202


>gi|237831495|ref|XP_002365045.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
            gondii ME49]
 gi|211962709|gb|EEA97904.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
            gondii ME49]
 gi|221487105|gb|EEE25351.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
            GT1]
 gi|221506791|gb|EEE32408.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
            VEG]
          Length = 1259

 Score = 1414 bits (3659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/1179 (57%), Positives = 873/1179 (74%), Gaps = 27/1179 (2%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            + Q+  WAV+S++F   GLV QQL+SF++F+   +QEI+DE   IEIRP  Q+ P ++ +
Sbjct: 86   VDQDACWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIRPTPQYRPEEEVE 145

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV--TKRVIKKG 140
             +  IY++   Q+ L++P + E +G +  L+P  AR RNLTYS+PLYVDV  T   +   
Sbjct: 146  -SNVIYRLKMDQLSLNRPSVEEKEGISKHLWPYEARTRNLTYSSPLYVDVEQTTYTVDPE 204

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
               E + +   +++V +G++P+ML+S+YC      E DL ++GEC YDQGGYFIING EK
Sbjct: 205  TGAERLVDQVTYSRVLLGRIPMMLKSAYCWTKDLPEHDLADVGECAYDQGGYFIINGGEK 264

Query: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA---KGG 257
            VL+AQE+M++N VYVF+K+QP+K+ +VAEVRS  E   +  S   V+  SRT     KGG
Sbjct: 265  VLVAQERMASNFVYVFQKKQPSKFGWVAEVRSQKEGM-QATSGFAVKKRSRTGGEGRKGG 323

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              G  I A LPYIRTEIPI+I+FRALG ++D+DIL  + YD +D Q++ L++PSLEE F 
Sbjct: 324  RPGGQIVAALPYIRTEIPIVILFRALGCISDRDILLRVAYDLKDPQLIALMKPSLEEGFD 383

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
              +Q V LD+IGKRG TVG  R+KRI+YA+E+L+KE+LPHVGT   CE KKA+Y GY++H
Sbjct: 384  YSSQDVCLDFIGKRGPTVGAQREKRIQYARELLRKEVLPHVGTEVGCENKKAFYIGYMVH 443

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL  LGR  +DDRDH+G KRLD+AGPL+   F  L+RK+ +DVR  +Q+ VD+GK  +
Sbjct: 444  RLLLADLGRINQDDRDHFGKKRLDMAGPLIAASFGTLYRKMIKDVRRILQRQVDHGKSFD 503

Query: 438  LQFAIK-AKTITSGLKYSLATGNWGQANAAG-TRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            +  AI+ A  IT GL+Y +ATGNWG+       R GV+QVLNRLT+AS LSHLRRLN+P+
Sbjct: 504  VAGAIRSASQITQGLQYQIATGNWGKDKEGKIVRTGVAQVLNRLTFASALSHLRRLNTPL 563

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GREGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM  I+VGSA   + EFL EWG
Sbjct: 564  GREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMSDISVGSATNTVHEFLVEWG 623

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             +  EE++P VI +  K+FVNG WVG   + ++L +TLR+LRRR D+++E  +VRD+  +
Sbjct: 624  LDPLEEMTPDVIKERVKVFVNGSWVGCFDEADVLCQTLRQLRRRCDISSETSIVRDLVNR 683

Query: 616  ELRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTE 674
            E++I+TD GR  RPLF+V E  R L+ KR  +   QR   ++  W  L+ KG IE++D E
Sbjct: 684  EVKIFTDAGRAMRPLFVVDEGTRDLVMKRCHLEELQRRGKDEKSWGYLMEKGIIEFVDCE 743

Query: 675  EEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
            EEET MI+M + D+       E+  A  YTHCEIHPSLILGVCASIIPFPDHNQSPRN Y
Sbjct: 744  EEETCMIAMFVEDI-----RSEKRQAFPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVY 798

Query: 735  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
            QSAMGKQAMG+Y +++  RMDTLA++LYYPQKPLV TRAME L FR+LPAGINAIVAI C
Sbjct: 799  QSAMGKQAMGVYTSSFNHRMDTLAHLLYYPQKPLVCTRAMEFLRFRELPAGINAIVAILC 858

Query: 795  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
            YSGYNQEDS+IM+QSSIDRG FRS+F+R+Y  EE++ G+L+ E F  P   +  GM+ G 
Sbjct: 859  YSGYNQEDSLIMSQSSIDRGLFRSVFYRTYCSEERQQGSLMVESFEPPSIEHVQGMKRGD 918

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYT------------RRDHSI 902
            Y KLD DGL  PG+RV G+DVIIGKT+P+  D+                     +RD S+
Sbjct: 919  YSKLDADGLVEPGSRVLGDDVIIGKTSPLFDDDTGMPGGAGAGPGGVPSPFAKRKRDCSL 978

Query: 903  SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
             LR SETG+VDQV+L+ N  G RF KV+VRSVRIPQ GDKF+SRHGQKGT+G+TY  EDM
Sbjct: 979  CLRSSETGVVDQVMLSVNNRGSRFTKVKVRSVRIPQTGDKFASRHGQKGTIGITYRTEDM 1038

Query: 963  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1022
            P+  EGITPD+I+NPHA+PSRMTIG L+EC++GK AA  G EGDATPF    V +IS  L
Sbjct: 1039 PFNEEGITPDLIMNPHAVPSRMTIGHLVECLLGKTAAIFGGEGDATPFNGYAVLDISNRL 1098

Query: 1023 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1082
            H  GY+  G E +Y+GHTGR L ++IF GPTYYQRLKHMVDDKIH+R RGPV +LTRQP 
Sbjct: 1099 HSLGYERFGNERLYHGHTGRHLPSLIFFGPTYYQRLKHMVDDKIHARARGPVTMLTRQPM 1158

Query: 1083 EGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSF 1142
            EG+SR+GGLRFGEMERDCMI+HGA+H LKERLF+QSDAYRVHVC+ CGL+  A+L + +F
Sbjct: 1159 EGKSREGGLRFGEMERDCMISHGAAHMLKERLFEQSDAYRVHVCDICGLVCTADLSRGNF 1218

Query: 1143 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            EC+ C NK+ I Q+ IPYACKLL QELMAM I PR++ +
Sbjct: 1219 ECKLCDNKSRISQICIPYACKLLLQELMAMCIYPRLVLQ 1257


>gi|320031539|gb|EFW13500.1| DNA-dependent RNA polymerase II RPB140 [Coccidioides posadasii str.
            Silveira]
          Length = 1205

 Score = 1413 bits (3658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/1199 (57%), Positives = 873/1199 (72%), Gaps = 73/1199 (6%)

Query: 7    DYEEQHQQEEEDEEEE-ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 65
            +YE+++ ++   E EE IT ED W VIS++FE KGLV QQLDSFDEFI  TMQE+V+E  
Sbjct: 3    EYEDEYGEDGYYEAEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQG 62

Query: 66   DIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 125
             + +      +           Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY+
Sbjct: 63   QVTLDQTIAPDEDDPDPVMVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYA 122

Query: 126  APLYVDVTKRVIK------------------KGHDGEEVTET-------------QDFTK 154
            +PLY+ +TK++ +                  KG +      T              D   
Sbjct: 123  SPLYLGITKKIAEGRERSLAERDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEEN 182

Query: 155  VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVY 214
            +FIGK+PIML+S YC L    E  L    ECPYD GGYFIINGSEKVLIAQE+ + N V 
Sbjct: 183  IFIGKMPIMLKSKYCILKDLGEHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQ 242

Query: 215  VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 274
            VFKK  P+   YVAE+RS  E  +R  S + +++ ++  +  G  G  IR+TLPYI+T+I
Sbjct: 243  VFKKAPPSPTPYVAEIRSAVEKGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDI 302

Query: 275  PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT 334
            PI++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++
Sbjct: 303  PIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSS 362

Query: 335  -VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 393
               +  +KR++YA++I+QKE LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRD
Sbjct: 363  PTSMNHEKRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRD 422

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G KRLDLAGPLL  LFR+LF +LT+D+  YVQ+CV+  + + L   +KA T+T GLKY
Sbjct: 423  HFGKKRLDLAGPLLANLFRVLFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKY 482

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            +LATGNWG Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 483  ALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 542

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            G++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P +TK
Sbjct: 543  GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTK 602

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            IFVNG WVG+HRDP  LV T++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+
Sbjct: 603  IFVNGVWVGVHRDPSHLVSTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFV 662

Query: 633  VEKQ-------RLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTE 674
            V+          L++ K  I  L+  +E P D           GW  LV  G +EY+D E
Sbjct: 663  VDNDPKSENSGSLVLTKEHIRKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAE 722

Query: 675  EEETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILG 715
            EEET MI M+  DL      QA   PEE  +D              T+THCEIHPS+ILG
Sbjct: 723  EEETIMIVMSPEDLEVSKQYQAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILG 782

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            +CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME
Sbjct: 783  ICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME 842

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
             L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V
Sbjct: 843  FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTV 902

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR 894
             E F +P RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT P++ + E  GQ ++
Sbjct: 903  VERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTK 962

Query: 895  -YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
             +T+ D S  LR +E+G+VDQVL++T+ + L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+
Sbjct: 963  QHTKLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTI 1022

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            G+T+ QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDV
Sbjct: 1023 GVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDV 1082

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TVD++S  L + GYQ RGFE MYNGHTGR+L A IFLGPTYYQRL+HMVDDKIH+R RGP
Sbjct: 1083 TVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIHARARGP 1142

Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 1132
             QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +R+H+C+ CGL+
Sbjct: 1143 TQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRIHICDICGLM 1201


>gi|302507686|ref|XP_003015804.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
 gi|291179372|gb|EFE35159.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
          Length = 1205

 Score = 1413 bits (3657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 684/1193 (57%), Positives = 872/1193 (73%), Gaps = 81/1193 (6%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            + EE IT ED W VISA+FE KGLV QQLDSFDEFI  TMQE+V+E   + +      + 
Sbjct: 14   EAEEGITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSD 73

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
             +        Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY++PLY+ ++K+++
Sbjct: 74   DEPDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIM 133

Query: 138  KKGHDGEE-----------------------------------VTETQDFTKVFIGKVPI 162
                +G E                                   + +  +   +FIGK+PI
Sbjct: 134  ----EGRERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPI 189

Query: 163  MLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 222
            ML+S YC L    E+ L    ECPYD GGYF+INGSEKVLIAQE+ + N V VFKK  P+
Sbjct: 190  MLKSKYCILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPS 249

Query: 223  KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRA 282
               YVAE+RS  E  +R  S + +++ S+  +  G  G  IR+TLPYI+T+IPI++VFRA
Sbjct: 250  PTPYVAEIRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRA 309

Query: 283  LGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDK 341
            LG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++ + + ++K
Sbjct: 310  LGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEK 369

Query: 342  RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
            R++YA++I+QKE LPH+   +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLD
Sbjct: 370  RVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLD 429

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
            LAGPLL  LFR+LF +LT+D+  YVQ+CV+ G+ + L   +KA T+T GLKY+LATGNWG
Sbjct: 430  LAGPLLANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWG 489

Query: 462  -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 520
             Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 490  EQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 549

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALM  ITVG+ + PI++F+ +   E  EE  P V P +TK+FVNG WV
Sbjct: 550  PEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWV 609

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 636
            G+HRDP  LV T++ LRRR  ++ EV +V DIR +E +I+TD GR  RPLF+V+      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 637  ---RLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMIS 682
                L++ K  I  L+  +E P D           GW  LV  G IEY+D EEEET MI 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIV 729

Query: 683  MTINDLVQARLH------PEEAYAD--------------TYTHCEIHPSLILGVCASIIP 722
            MT  DL  ++ +      PEE   D              T+THCEIHPS+ILG+CASIIP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMG+++TN++ RM+T+A +LYYPQKPL TTR+ME L FR+L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P
Sbjct: 850  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKP 909

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 900
             RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT+P++ + E  GQ ++ +T+ D 
Sbjct: 910  MRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQRTKQHTKLDV 969

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  E
Sbjct: 970  STPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHE 1029

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
            DMP+T EG+TPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD++S 
Sbjct: 1030 DMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDSVSS 1089

Query: 1021 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1080
             L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQ
Sbjct: 1090 LLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQ 1149

Query: 1081 PAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
            P EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH+C+ CGL+ 
Sbjct: 1150 PVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDICGLMT 1202


>gi|397576311|gb|EJK50184.1| hypothetical protein THAOC_30880 [Thalassiosira oceanica]
          Length = 1299

 Score = 1412 bits (3654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 690/1120 (61%), Positives = 837/1120 (74%), Gaps = 69/1120 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            +TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQE+VD+S  I + PE QH  G   D
Sbjct: 50   VTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHTVGYDED 109

Query: 83   -FAET-------IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 134
             F E        ++++ FGQ+YLSKP   E DG    +FP  ARLRNLTY+APLYVDVT 
Sbjct: 110  GFDEAMSSSTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYVDVTM 169

Query: 135  RVIKKGHDG------EEVTE---TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 185
               +   D       EE+ E   T++  K F+G VPIMLRS +C L    +  L +LGEC
Sbjct: 170  NEYRVPSDANVADPAEEMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLADLGEC 229

Query: 186  PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMF 245
             YDQGGYF++NGSEKV++AQE+MS NHVY F+K+QP+K+++V E RS  E+  RP ST++
Sbjct: 230  IYDQGGYFVVNGSEKVIVAQERMSNNHVYAFRKKQPSKFSWVIETRSQVENSTRPTSTLY 289

Query: 246  VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM 305
            ++M  +   KG   G  IR+TLPYIRT+IP++I+FRALG+VAD+DI+EH+ YD  D +MM
Sbjct: 290  IQMYQK-GGKGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMM 348

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            +L RPSLEE+FVIQ Q+VALD+IG+RG+   VT+D RI+YA  ILQ+E+LPHVGT + CE
Sbjct: 349  DLFRPSLEESFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQREVLPHVGTEEHCE 408

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            TKK ++ GY +H+LL+C LGR  EDDRDH+G KRLDLAGPLLGGLFR+LFRKLT+DVR +
Sbjct: 409  TKKGFFLGYAVHKLLMCRLGRVDEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRRH 468

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNW------------------------- 460
            +Q+C+D GK  N+  AIK+  IT GLKYSLATGN                          
Sbjct: 469  LQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNCESYRKNDCIFVFSCKPNNLMRHLGR 528

Query: 461  --GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
              G    A T+AGVSQVLNRLTYAS+LSHLRR N+P+ R GK AKPRQLHNS WGM+CP 
Sbjct: 529  LEGGDKGATTKAGVSQVLNRLTYASSLSHLRRSNTPLARTGKQAKPRQLHNSHWGMVCPC 588

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT--KIFVN 576
            ETPEGQA GLVKN+ALM YIT G++  P++EFLEE+ TEN  +I P+VI +++  KIFVN
Sbjct: 589  ETPEGQAVGLVKNMALMAYITTGTSQVPVMEFLEEFSTENLTDILPSVIAESSTCKIFVN 648

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EK 635
            G WVG+HRDP  LV T R LRR +D++ EV +VRDI   E+RIYTD GR  RPLFIV E 
Sbjct: 649  GNWVGVHRDPRHLVHTFRSLRRMIDIDAEVSIVRDITESEVRIYTDAGRICRPLFIVNED 708

Query: 636  QRLLIKKRDIIALQQRESPEDGG---WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            Q L IKK  I  +Q     EDG    W DL+ +G +EY+DTEEEETTMI+M   DL    
Sbjct: 709  QELAIKKHHISQIQGFS--EDGKRLTWTDLLMEGLVEYVDTEEEETTMIAMEPKDL---- 762

Query: 693  LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 752
                E Y+ TYTHCEIHPS+ILGVCASIIPFPDHNQSPRN YQSAMGKQAMGIY +NYQ 
Sbjct: 763  ---GEGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGIYASNYQV 819

Query: 753  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 812
            RMDT+A+VL+YPQKPL TTRAME L FR+LP+G+N +VAI  Y+GYNQEDS+IMNQS+ID
Sbjct: 820  RMDTMAHVLHYPQKPLCTTRAMEFLKFRELPSGVNVVVAIMIYTGYNQEDSLIMNQSAID 879

Query: 813  RGFFRSLFFRSYRDEEK-----KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 867
            RG FRS ++R Y D+EK      +G L  E F +P   NT GM++G Y+KLD+DGL  PG
Sbjct: 880  RGLFRSSYYRCYNDQEKAASVGSVGALNSETFEKPTMDNTRGMKYGDYNKLDEDGLVAPG 939

Query: 868  TRVSGEDVIIGKTTPISQDEAQGQA-SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
            TRVSG+DV+IGKTTP    EA   A SRYT+RD S S++ +E+G+VD VL++T  +G RF
Sbjct: 940  TRVSGDDVLIGKTTPT---EALANAPSRYTKRDCSTSMKATESGIVDNVLISTTKEGYRF 996

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
             KVR+R+VR+PQ+GDKF+SRHGQKGTVGMTY QEDMP+T EGI PDIIVNPHAIPSRMTI
Sbjct: 997  TKVRIRNVRVPQVGDKFASRHGQKGTVGMTYRQEDMPFTCEGIVPDIIVNPHAIPSRMTI 1056

Query: 987  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
             QLIECI+GKVA   G EGDATPFTDV VD+++  LH  GYQ  G E MY GHTGR L A
Sbjct: 1057 AQLIECILGKVAVFQGCEGDATPFTDVHVDDVASRLHAMGYQRHGNEHMYQGHTGRPLNA 1116

Query: 1047 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
             +F+GPT+YQRLKH+VDDKIHSR RGPV +LTRQP EG S
Sbjct: 1117 RVFIGPTFYQRLKHLVDDKIHSRARGPVAMLTRQPLEGAS 1156


>gi|392580422|gb|EIW73549.1| hypothetical protein TREMEDRAFT_70991 [Tremella mesenterica DSM 1558]
          Length = 1214

 Score = 1411 bits (3653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/1212 (58%), Positives = 869/1212 (71%), Gaps = 65/1212 (5%)

Query: 19   EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78
            EEE++  ED W +IS+YFE KGLVRQQL+SF+EFI+NT+QEIVDE+  I +   +Q   G
Sbjct: 11   EEEQLEGEDYWTIISSYFEGKGLVRQQLESFNEFIENTLQEIVDENPLIILDQHAQFT-G 69

Query: 79   QQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV-I 137
            ++ D     +++ FGQIYL++P  TESDG  A +FP+ ARLRNLTYSAPLYV++ +R  +
Sbjct: 70   KEGDELRR-HQLRFGQIYLARPTTTESDGIAAPMFPQEARLRNLTYSAPLYVEIERRTFV 128

Query: 138  KKGHD---------------GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 182
              G D               GE V E    TK FIGKVP+M+RS +C L    ++ L  L
Sbjct: 129  AAGADEDPLDTEWQPLLDAYGEPVVEK---TKAFIGKVPVMVRSHFCHLENLPDESLYHL 185

Query: 183  GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS 242
             ECPYD GGYF++ GSEKVLIAQE+M+ N VYVF+K+ P  Y Y A V S  E   + PS
Sbjct: 186  KECPYDSGGYFVVKGSEKVLIAQERMAANQVYVFRKQSP--YTYFATVTSQMERGGKMPS 243

Query: 243  TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDT 302
               VRM  R+S  GG++G  I   LPYI+  IPI+IVFRALG +AD DILEHIC++  DT
Sbjct: 244  ETEVRMYPRSS--GGTTGSVIHVRLPYIKVPIPIVIVFRALGIIADSDILEHICFNMGDT 301

Query: 303  QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
            QM+E+LRP +EEAF IQ+++ ALD+IG+R      TR +R   A +ILQKE LPHV   +
Sbjct: 302  QMLEMLRPCVEEAFAIQSRETALDFIGRRHNKDIGTRMQRQLVAFDILQKEFLPHVSVSE 361

Query: 363  FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
              E+KKAY+ GY+IHRL   AL RR  DDRDH+GNKR+DLAGPLL  LFR LF+ LT+ V
Sbjct: 362  GFESKKAYFLGYMIHRLCSAALNRRDLDDRDHFGNKRMDLAGPLLANLFRGLFKNLTKRV 421

Query: 423  RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA 482
              ++  C++  +      A++   IT G +Y++ATGNWG       R GVSQVLNR TYA
Sbjct: 422  HRHLTTCIEKNRPFVFSEALQPSIITDGFRYAIATGNWG--TGTNRRVGVSQVLNRYTYA 479

Query: 483  STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 542
            STLSHLRR N+PI R  K  KPRQLHN+ WGM+CPAETPEG ACGLVKNLAL+ YI+VGS
Sbjct: 480  STLSHLRRTNTPIDRGSKATKPRQLHNTHWGMVCPAETPEGAACGLVKNLALLSYISVGS 539

Query: 543  AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV 602
             A P++EFLEEWG E+  E      P ATK+FVNG W+G+HR+   L   L ++RR   +
Sbjct: 540  YAAPVMEFLEEWGLEDQSEFQHN--PGATKVFVNGVWMGVHRNAGTLYANLLQMRRGGQL 597

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDI----IALQQRESPED 656
              EV +VRDIR +ELR+ TD GR  RPL IV++  Q L IKK  I    I L+  E    
Sbjct: 598  KHEVSIVRDIRERELRLCTDAGRVCRPLLIVDQRTQSLKIKKSHIERTEILLEGGEDIAT 657

Query: 657  G-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-----------------HPEEA 698
            G  W +L+  G IEY+D  EEET +I+MT  DLV AR                  H + A
Sbjct: 658  GSAWIELLNDGVIEYVDAAEEETILIAMTSEDLVNARTASGKDELVRQRAAHNLDHFDPA 717

Query: 699  -------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
                   ++  YTH EIHPS+ILGVC SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ
Sbjct: 718  ARVKSTNWSQNYTHMEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGVHLTNYQ 777

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDT+A +LYYPQKPL TTR+ME+L F +LPAG NAIVAI CYSGYNQEDSVIMNQSSI
Sbjct: 778  LRMDTMANILYYPQKPLATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSI 837

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGT 868
            DRG FRSL++RSY D EK  G    E   +PDR +T+ M+ GS   Y KLD DGL  P T
Sbjct: 838  DRGLFRSLYYRSYTDAEKMTGMEKVETIEKPDRKDTLRMKMGSSDRYAKLDIDGLIAPAT 897

Query: 869  RVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
             V+G+D+IIGKT PI ++ E  GQ  S +T+RD S  L+ +E G+VDQV+L+TN DG +F
Sbjct: 898  NVNGDDIIIGKTAPIPEESEELGQRTSLHTKRDVSTPLKSTEQGVVDQVMLSTNGDGHKF 957

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
            VK+R+RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI
Sbjct: 958  VKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTI 1017

Query: 987  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            G L+EC++ K++   G EGDATPFT++TV+ +SK L + GYQ RG E MY+GHTGR+L A
Sbjct: 1018 GHLVECLLSKLSTMTGSEGDATPFTELTVEKVSKFLRQRGYQSRGLEVMYHGHTGRKLQA 1077

Query: 1047 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 1106
             I+ GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEMERDCMI+HG 
Sbjct: 1078 QIYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCMISHGI 1137

Query: 1107 SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 1166
            + FLKER++D SD +RVHVC+ CGL+AIANLKK  F C  C+N T I Q++IPYA KLLF
Sbjct: 1138 AAFLKERMYDSSDGFRVHVCDQCGLMAIANLKKQEFHCSVCRNSTQISQIYIPYAAKLLF 1197

Query: 1167 QELMAMAIAPRM 1178
            QEL AM IA RM
Sbjct: 1198 QELQAMNIAVRM 1209


>gi|159487647|ref|XP_001701834.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
            reinhardtii]
 gi|158281053|gb|EDP06809.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
            reinhardtii]
          Length = 1634

 Score = 1409 bits (3648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 691/1140 (60%), Positives = 844/1140 (74%), Gaps = 71/1140 (6%)

Query: 6    YDYEEQHQQE-EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
            Y  +E H +  +E+E+ EI QED+W VI+A+F++KGLVRQQLDSF+EF+  T+QEI+DE+
Sbjct: 2    YGADEDHMEVVQEEEDTEIVQEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDET 61

Query: 65   ADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 124
             +I I+PESQH PG ++   E  Y I FGQ+YLS+P +TE DGE+  LFPK ARLRNLTY
Sbjct: 62   PEIVIKPESQHLPGVEAA-EEKEYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTY 120

Query: 125  SAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS-EKDLTELG 183
             APLYVDVTK    +  + E   +T+ F+ V +GKVPIML+S  C L++ S E++ T LG
Sbjct: 121  CAPLYVDVTKTEYTRVGENEVEEKTETFSHVHLGKVPIMLKSERCNLHEASTEQEATNLG 180

Query: 184  E-------------CP---------------------------YDQGGYFIINGSEKVLI 203
            E             CP                           + QGGYF+INGSEKVLI
Sbjct: 181  ESYFGAAACLIVGTCPGIAHQLAPPLTPLTPALAAPTRSASSAHPQGGYFVINGSEKVLI 240

Query: 204  AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI 263
            AQE+M+ NHVYVFKK QP+KY + AE+RS+ E   R  S+M + ML++       +   I
Sbjct: 241  AQERMANNHVYVFKKSQPSKYTFCAEIRSVVEGSTRSASSMSIMMLAKGKKA--GAAGVI 298

Query: 264  RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-DTQMMELLRPSLEEAFVIQNQQ 322
            RA +PYIR E PI I+FRALGFV+D+DILEHI YD   D  M+E LR S+EEA  +Q Q+
Sbjct: 299  RAQIPYIRAEFPIFILFRALGFVSDRDILEHIVYDLDADPAMLEALRSSVEEAQEVQTQE 358

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
             AL+Y+GKRG   G +++                      F ET+K Y+ GY++HRL+L 
Sbjct: 359  EALNYLGKRGTVTGASKE----------------------FMETRKGYFVGYMVHRLMLV 396

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
            ALGRR EDDRDHY NKRLDL GPL+ GLFR+LFRKL +++R   Q+ VD GK++N+  AI
Sbjct: 397  ALGRRPEDDRDHYANKRLDLGGPLMAGLFRLLFRKLCKELRMQAQRMVDAGKEINVISAI 456

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
              K IT GLKYSLATGNWG+    G RAGVSQVL RLTYASTLSHLRR+NSPIGREGKLA
Sbjct: 457  NDKVITRGLKYSLATGNWGEQGKQGIRAGVSQVLARLTYASTLSHLRRVNSPIGREGKLA 516

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHNS WG+ CPAETPEGQA GLVKN+ALM YITVG+ + P++  LEE+ TE  +E+
Sbjct: 517  KPRQLHNSLWGIFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHLEEFNTEALDEV 576

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
            +PA I  +TK+F+NG W+GI RDP  L+K LR +RR+V  +TEV ++ D  LKELRI+TD
Sbjct: 577  TPADIAASTKVFINGVWLGIQRDPTALIKNLRAMRRQVAFSTEVAIIYDGPLKELRIFTD 636

Query: 623  YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEYIDTEEEETTMI 681
            YGR SRPL+I E  RLL+ K  I  L      ED   W  LV  G +EYID EEEETTMI
Sbjct: 637  YGRASRPLYICEDNRLLVSKHHIRRLISPLPDEDEYAWPQLVQDGLVEYIDAEEEETTMI 696

Query: 682  SMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741
            +MTI DL  AR     A   TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 697  AMTIADLRNAR-EAGAATGTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQ 755

Query: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801
            AMG+Y TNYQ RMDT  +VLYYPQKPLV TRAM++L FR+LPAGINAIVAI CYSGYNQE
Sbjct: 756  AMGMYATNYQTRMDTQGFVLYYPQKPLVCTRAMDYLKFRELPAGINAIVAIMCYSGYNQE 815

Query: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 861
            DS+++N SSIDRGF RS+F+R+Y++EEKK G++ +E+   PD S T  M+HG+YDKLD D
Sbjct: 816  DSLMLNGSSIDRGFHRSIFYRAYKEEEKKAGSMAREEIEAPDPSVTSKMKHGTYDKLDAD 875

Query: 862  GLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
            GL PPGTRVSGED+I GKT  +  D+  G   R+T++D S++LR  E G++DQV+LTTN 
Sbjct: 876  GLCPPGTRVSGEDIICGKTVTLP-DDPTGAVQRFTKKDASLALRGHEAGVIDQVMLTTND 934

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +G +FVK+RVR++ IPQ+GDKF+SRHGQKGT G+TYT EDMP+T EGI PDIIVNPHAIP
Sbjct: 935  EGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTMEDMPFTAEGIVPDIIVNPHAIP 994

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMTIG L+E +M KVA+ MG EGDATPFT VTVDN+S+ LH  GYQ RG+E MY+GHTG
Sbjct: 995  SRMTIGHLVEALMSKVASLMGSEGDATPFTKVTVDNVSQMLHDLGYQRRGWEVMYSGHTG 1054

Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
            R+L A IFL PTYYQRLKHMVD KIHSRGRGPVQ+LTRQPAEGR+RDGGLRFGEMERDC+
Sbjct: 1055 RQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVLTRQPAEGRARDGGLRFGEMERDCL 1114



 Score =  127 bits (319), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 69/85 (81%)

Query: 1099 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 1158
            +C+I+HGA+ FLKERLFDQSDAYR+HVCE  GLIA+ANLKK  F     K+ ++I QV+I
Sbjct: 1543 NCIISHGAAAFLKERLFDQSDAYRIHVCERSGLIAVANLKKQQFTSTIYKDGSNIYQVYI 1602

Query: 1159 PYACKLLFQELMAMAIAPRMLTKED 1183
            PYACKLLFQELMAM IAPRM  + D
Sbjct: 1603 PYACKLLFQELMAMCIAPRMQFERD 1627


>gi|402077539|gb|EJT72888.1| hypothetical protein GGTG_09739 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1278

 Score = 1407 bits (3642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 705/1268 (55%), Positives = 890/1268 (70%), Gaps = 95/1268 (7%)

Query: 5    DYDYEEQHQQEEEDEE-----EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQE 59
            D DYE  + Q+ + EE     E IT ED W VIS+YF+EKGLV QQ+DS++EF   T+Q 
Sbjct: 6    DNDYEADNYQDGQGEEDDFDPEAITPEDCWTVISSYFDEKGLVSQQIDSYNEFTTTTIQS 65

Query: 60   IVDESADIEIRPESQHNPGQQSDFAETI----YKISFGQIYLSKPMMTESDGETATLFPK 115
            I+DE   + +    Q NP         +    Y ++FG I +++P + E+DG+  TL P 
Sbjct: 66   IIDEYHTLTL---DQQNPQDSGASGRPLRMRRYTLTFGHILVTQPTIKETDGQANTLVPY 122

Query: 116  AARLRNLTYSAPLYVDVTKRV-------IKKGHDGEEVTETQDFTK-------------- 154
              R RNLTY+ PL+V +T++V       I +    EE  E    T               
Sbjct: 123  ECRDRNLTYACPLWVKLTRKVEAAVEVDIPEDKLTEEQKEEALATNEHPTTVVWVPEPVE 182

Query: 155  -------------VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
                         VFIGK+PIML+S  C L    E +L  L ECPYDQGGYFIINGSEKV
Sbjct: 183  EHSIEKNENMRDMVFIGKIPIMLKSRICYLRSQPESELFLLNECPYDQGGYFIINGSEKV 242

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 261
            LIAQE+ + N V VFKK QP+KY Y AE+RS  E  +R  S++ + + S+  +  G+ GQ
Sbjct: 243  LIAQERSAANIVQVFKKAQPHKYLYQAEIRSALEKGSRLISSLVMSLTSKGDSSRGAFGQ 302

Query: 262  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 321
             +  TLPY+  E+P+ IVFRALG V+D+DIL HI  D  D QM+E+LRPS+EEAF IQ++
Sbjct: 303  TLHVTLPYVNGELPLAIVFRALGVVSDEDILNHIVLDKGDVQMLEMLRPSIEEAFCIQDR 362

Query: 322  QVALDYIGKRGATVGV---TRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            +VALD+IGKR    G     R +R++ A++ILQKE LPHV   +  ET+KA++ GY++H+
Sbjct: 363  EVALDFIGKRVGRDGQHANNRHQRLRMARDILQKETLPHVSQEEGQETRKAFFLGYMVHK 422

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            +L CALGRR  DDRDH+G KRLDLAGPLL  LFR L R+++ D+  ++++C+D+ ++ +L
Sbjct: 423  ILQCALGRRDVDDRDHFGKKRLDLAGPLLAKLFRNLVRRMSNDMMNHLKRCIDSSRNFDL 482

Query: 439  QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
              A++  T+++GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR
Sbjct: 483  TSALRPNTLSNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 542

Query: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
            +GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  ++VG+ A PI  FL   G E
Sbjct: 543  DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCMVSVGTPASPIEHFLVSRGME 602

Query: 558  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
              EE  P+     +KIF+NG WVG+ R+ + L   +  LRR+  V+ EV ++ D+R  E 
Sbjct: 603  VLEEFEPSDGMAVSKIFINGTWVGVSRNIDELADAVADLRRKNTVDAEVSLIHDVREGEF 662

Query: 618  RIYTDYGRCSRPLFIV----------EKQRLLIKKRDIIALQ-----QRESPEDG--GWH 660
            RI +D GR  RPLF+V          +K  L++ K  I  L      Q    ++G  GW 
Sbjct: 663  RILSDAGRVMRPLFVVNQKDDEMTGTKKSSLVLTKEHIARLHEDKDNQLSQGDEGFYGWE 722

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDL------------------------VQARLHPE 696
             L + G I+ +D E+EET MI MT  DL                        +  RL  +
Sbjct: 723  GLKSDGVIDLMDAEQEETAMICMTPEDLDIFRYLKETGINLASEDDIITEHNINKRLRTK 782

Query: 697  -EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
                  TYTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMD
Sbjct: 783  INPTTHTYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYNKRMD 842

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL  TR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG 
Sbjct: 843  TMANILYYPQKPLGITRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGL 902

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLFFRSY D EK++G  + E F +P R +T+ ++ G+YDKL+DDG+  PGTRVSGED+
Sbjct: 903  FRSLFFRSYTDAEKRVGINLVEKFEKPYRQDTLRLKQGTYDKLEDDGIVAPGTRVSGEDI 962

Query: 876  IIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            IIGKT PI  D  + GQ + ++ +RD S  LR +E+G+VDQV+LTTN DGL++VKVRVR+
Sbjct: 963  IIGKTAPIQPDNQELGQRTVQHVKRDASTPLRSTESGIVDQVILTTNQDGLKYVKVRVRT 1022

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGITPDII+NPHAIPSRMTI  LIEC+
Sbjct: 1023 TKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTREGITPDIIINPHAIPSRMTIAHLIECL 1082

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1053
            + KVA   G EGDATPFT+VTVD++SK L +  YQ RGFE +Y+GHTGR+L A +F GPT
Sbjct: 1083 LSKVATIKGFEGDATPFTEVTVDSVSKLLREYDYQSRGFEVLYHGHTGRKLRAQVFFGPT 1142

Query: 1054 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 1113
            YYQRL+HMVDDKIH+R RGP+QI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKER
Sbjct: 1143 YYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1202

Query: 1114 LFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1172
            LF+ SDA+RVH+CE CGL+  IA+L K +FECR CKNKT I QVHIPYA KLLFQEL AM
Sbjct: 1203 LFEVSDAFRVHICEICGLMTPIADLTKGTFECRPCKNKTKIAQVHIPYAAKLLFQELAAM 1262

Query: 1173 AIAPRMLT 1180
             IA RM T
Sbjct: 1263 NIATRMFT 1270


>gi|406864058|gb|EKD17104.1| DNA-directed RNA polymerase II subunit RPB2 [Marssonina brunnea f.
            sp. 'multigermtubi' MB_m1]
          Length = 1266

 Score = 1407 bits (3642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/1181 (58%), Positives = 866/1181 (73%), Gaps = 84/1181 (7%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP--GQQ 80
            IT ED W VIS++FE KGLV QQ+DSFDEF+  TMQE+V+E++ + +    Q+NP    +
Sbjct: 27   ITAEDCWMVISSFFEAKGLVSQQVDSFDEFVSTTMQELVEENSQLTL---DQNNPPSADE 83

Query: 81   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK------ 134
            +  A   Y+I FG + LS+P MTE DG T  + P+ ARLRNLTYS+PLY+++TK      
Sbjct: 84   NPIALRRYEIKFGTVLLSRPAMTEGDGTTQVMLPQEARLRNLTYSSPLYLEMTKNVSVAV 143

Query: 135  -------------------------RVIKKGHDGEE-----VTETQDFTKVFIGKVPIML 164
                                     R++ +  DG E     +  T D  +VFIGK+PIML
Sbjct: 144  ERNVPLNELDDEQEAEMAATGIHPTRLVWEDEDGREAGPDKIEPTPD--RVFIGKLPIML 201

Query: 165  RSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKY 224
            +S YC L    E DL    ECPYDQGGYFIINGSEKVLIAQE+ + N V VF+K  P+  
Sbjct: 202  KSKYCILKDLDEDDLYAWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFQKSLPSPT 261

Query: 225  AYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
             YVAE+RS  E  +R  S M +++ S+     G  GQ I++TLPYIR ++PI +VFRALG
Sbjct: 262  PYVAEIRSALEKGSRLISQMSIKLFSKGDGGRGGFGQTIKSTLPYIRADVPIAVVFRALG 321

Query: 285  FVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIK 344
             V+D+DIL HICYD  DTQM+E+L+P +EEAFVIQ+++VALD+IGKRG    +TRDKR+K
Sbjct: 322  VVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALDFIGKRGQNSTLTRDKRVK 381

Query: 345  YAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 404
            YA++I+QKE+LPH+   +  ET+KA++ GY++H++L CALGRR  DDRDH+G KRLDLAG
Sbjct: 382  YARDIMQKELLPHISQSEGSETRKAFFLGYMVHKMLQCALGRRETDDRDHFGKKRLDLAG 441

Query: 405  PLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QA 463
            PLL  LFR LFR+LT DV  Y++ CV+N K+ NL   +KA T+T+GLKYSLATGNWG Q 
Sbjct: 442  PLLAKLFRGLFRRLTSDVYKYLKLCVENNKEFNLALGVKATTMTNGLKYSLATGNWGDQK 501

Query: 464  NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 523
             AA + AGVSQVLNR T++STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEG
Sbjct: 502  KAASSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 561

Query: 524  QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 583
            QACGLVKNLALM Y+TVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+H
Sbjct: 562  QACGLVKNLALMCYVTVGTPSDPIIEFMIQRNMEVLEEYEPLRSPNATKVFVNGVWVGVH 621

Query: 584  RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQ 636
            RDP  LVKT++ LRR   ++ EV ++RDIR +E +I+TD GR  RPLF+V+       K 
Sbjct: 622  RDPGHLVKTVQHLRRSHLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVVDNDVESPNKG 681

Query: 637  RLLIKKRDIIALQQRESPEDG-----------GWHDLVAKGFIEYIDTEEEETTMISMTI 685
             L++ K  I  L++ +                G+  L+ +G +EY+D EEEET MI MT 
Sbjct: 682  NLVLNKDHIRRLEEDQHLHANTDPALKDELYFGFQGLINEGVVEYVDAEEEETIMIVMTP 741

Query: 686  NDL-----VQA--RLHPEEA-------------YADTYTHCEIHPSLILGVCASIIPFPD 725
             DL     +QA  ++ P+ +              A  +THCEIHPS+ILG+CASIIPFPD
Sbjct: 742  EDLDISRQIQAGYKIRPDNSGDLNKRVKAPVNPTAHIWTHCEIHPSMILGICASIIPFPD 801

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG
Sbjct: 802  HNQSPRNTYQSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAG 861

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
             NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G    E F +P R+
Sbjct: 862  QNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFYRAYTDQEKRIGMNALESFEKPYRN 921

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG--QASRYTRRDHSIS 903
            +TM ++ G+YDKLD+DGL  PG RVSG+D+IIGKT P+  D      +   +T+RD S  
Sbjct: 922  DTMKLKQGTYDKLDEDGLVAPGVRVSGDDIIIGKTAPLPADSQDFGIRNKAHTKRDASTP 981

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
            LR +E G+VDQVLLTTN++G +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP
Sbjct: 982  LRSTENGIVDQVLLTTNSEGQKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMP 1041

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023
            +T +GI PD+I+NPHAIPSRMTI  LIEC + KV+   G EGDATPFT+VTVD++SK L 
Sbjct: 1042 FTCQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDATPFTEVTVDSVSKLLR 1101

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
              GY  RGFE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKIH+R RGP+QILTRQP E
Sbjct: 1102 NHGYHSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVE 1161

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
            GR+RDGGLRFGEMERDCMI+HGA+ FLKERLF+ SDA+RVH
Sbjct: 1162 GRARDGGLRFGEMERDCMISHGAASFLKERLFEVSDAFRVH 1202


>gi|66363138|ref|XP_628535.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
 gi|46229549|gb|EAK90367.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
          Length = 1177

 Score = 1407 bits (3641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/1176 (58%), Positives = 861/1176 (73%), Gaps = 27/1176 (2%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            E + +EI QED+WA+I  YF ++GLV QQL+SF++FI   +QEIVDE   I I P+SQ+ 
Sbjct: 10   EQKNDEIQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQYR 69

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
            P +Q D  +  Y + FGQ+ LS+P + E +G    L+P  ARLRNLTYS+P++VD  ++V
Sbjct: 70   PDEQID-TKVRYVLKFGQLSLSRPSVEEREGVARGLWPNEARLRNLTYSSPVFVDAEQKV 128

Query: 137  IKKGHDGEE--VTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI 194
             K   DG E  V ET  ++++ + K+PIMLRS YC  +  SE++L   GEC YDQGGYFI
Sbjct: 129  YKLEDDGSETLVYETV-YSRLPLAKIPIMLRSEYCWTHNISERELQSAGECVYDQGGYFI 187

Query: 195  INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA 254
            ING EKVL+ QE+M+ N VY+F+K QP+KY ++AE+RS  E   +  S   V++      
Sbjct: 188  INGMEKVLVGQERMANNFVYLFQKNQPSKYTWIAEIRSNREGM-QATSGFSVKL----RG 242

Query: 255  KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEE 314
              G+ GQ I ATLPYIRT+IPI I+FRALG ++DKDIL    YDF DTQM+ LLRPSLEE
Sbjct: 243  SDGNQGQ-IVATLPYIRTDIPIAILFRALGVLSDKDILSRCVYDFNDTQMLALLRPSLEE 301

Query: 315  AFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGY 374
             F   +Q V LD+IGKRG TVG  R+KRI+YAKE+ +KE+LPHVG     E++KAY+ GY
Sbjct: 302  TFEFFSQDVCLDFIGKRGPTVGAAREKRIQYAKELFEKELLPHVGVTSGSESRKAYFIGY 361

Query: 375  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
            ++H+L L ALGR  EDDRDH+G KRLDLAGPL+   F   FRK+ +DVR  +Q+ +DNGK
Sbjct: 362  MVHKLCLGALGRVPEDDRDHFGKKRLDLAGPLVAASFGQCFRKMMKDVRRLLQRNIDNGK 421

Query: 435  DVNLQFAIK-AKTITSGLKYSLATGNWGQ-ANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
            + ++   I+ A  IT  ++Y  ATGNWG+  +    R GVSQVL+RLT+ S LS+LRRLN
Sbjct: 422  EFDVAGVIRSASYITQTIQYQFATGNWGKDKDGKIIRTGVSQVLSRLTFTSALSYLRRLN 481

Query: 493  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
            +P+GREGK AKPRQLHN+ WGM+CPAETPEG + GLVKNLALM  I+VG   Y I  FL+
Sbjct: 482  TPLGREGKFAKPRQLHNTHWGMICPAETPEGHSVGLVKNLALMCEISVGYRPYAIRTFLD 541

Query: 553  EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
            EWG ++ +EI P  I +  K+F+NG WVG   D E  +  LR +RR  ++  E  +V D+
Sbjct: 542  EWGMDSIDEIPPEGIKRKIKVFLNGNWVGCFDDSEDSISNLRMIRRSGEIPYETSIVLDV 601

Query: 613  RLKELRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIAL---------QQRESPEDGGWHDL 662
              +E++++TD GR  RPL+IV E   L IKK  I +L         +  +   D  W DL
Sbjct: 602  VNREVKLFTDSGRSMRPLYIVGEDGDLKIKKSHINSLLNENPSFDEKMEDEKHDYTWDDL 661

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
            V  G IEYID EEEET+MI+M INDL   R      Y  TYTHCEIHPSLILGVCASIIP
Sbjct: 662  VNTGIIEYIDCEEEETSMIAMFINDLRIDR-----GYCSTYTHCEIHPSLILGVCASIIP 716

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRN YQSAMGKQAMG+Y +NY  RMDTL YVLYYPQKPLVTTRAM ++ FR+L
Sbjct: 717  FPDHNQSPRNVYQSAMGKQAMGVYTSNYNVRMDTLGYVLYYPQKPLVTTRAMTYMRFREL 776

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAGIN IV I CYSGYNQEDS+IMNQSSIDRG FRS+FFR+Y  EEK++G+ + E F  P
Sbjct: 777  PAGINCIVGIMCYSGYNQEDSLIMNQSSIDRGLFRSVFFRTYVSEEKQVGSNLIEAFELP 836

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSI 902
            +     G+R G+Y  LD DGL  PG RV G+D+IIGK  PI+ ++   +  + T+RD S+
Sbjct: 837  NPEEVSGLRFGNYGNLDLDGLIEPGNRVLGDDIIIGKVGPINPEDRDTRIQKLTKRDCSV 896

Query: 903  SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
             +R SE G+VD+VLL+TN+ G++F KV+VR++RIP +GDKF+SRHGQKGT+G+TY  EDM
Sbjct: 897  GIRTSEHGVVDEVLLSTNSKGVKFAKVKVRTIRIPHVGDKFASRHGQKGTIGITYRTEDM 956

Query: 963  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1022
            P+T +GI PDII+NPHAIPSRMTIG LIEC++GK  A  G EGDATPFT +TV+ IS  L
Sbjct: 957  PFTQDGIIPDIIMNPHAIPSRMTIGHLIECLLGKACAIQGLEGDATPFTKITVEEISSRL 1016

Query: 1023 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1082
            H  G+Q  G E MYNGHTG+RL + IF+GPTYYQRLKHMVDDKIH+R RG V +LTRQP 
Sbjct: 1017 HSSGFQKNGNEVMYNGHTGKRLESRIFIGPTYYQRLKHMVDDKIHARARGAVTMLTRQPR 1076

Query: 1083 EGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSF 1142
            EGR+R+GGLRFGEMERDCMI+HGA+  LKERLFDQ DAYRVHVCE CGLI IA+L K  F
Sbjct: 1077 EGRAREGGLRFGEMERDCMISHGAAKMLKERLFDQCDAYRVHVCEMCGLICIADLGKQHF 1136

Query: 1143 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
            EC  C NK+ I Q+ +PYACKLL QELMAM+I PR+
Sbjct: 1137 ECNACNNKSRISQICLPYACKLLLQELMAMSIYPRL 1172


>gi|290973756|ref|XP_002669613.1| DNA-directed RNA polymerase II [Naegleria gruberi]
 gi|284083163|gb|EFC36869.1| DNA-directed RNA polymerase II [Naegleria gruberi]
          Length = 1233

 Score = 1405 bits (3638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 697/1230 (56%), Positives = 899/1230 (73%), Gaps = 62/1230 (5%)

Query: 4    DDYDYEEQHQQEEED-------------------EEEEI-TQEDAWAVISAYFEEKG-LV 42
            DD +YE+  Q + ED                   E +E+  QED W VI+A+F++KG LV
Sbjct: 10   DDMEYEDDEQMDYEDNNQYAGISMEDDQQNFNFNEADELKVQEDVWPVITAFFDQKGGLV 69

Query: 43   RQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAET----IYKISFGQIYLS 98
            RQQLDSF+ FIQ T+QE+V+ +++I +   + +  GQ+ D  +      Y I FGQIYLS
Sbjct: 70   RQQLDSFNVFIQQTIQELVEGTSEIMLSSSASYKVGQKRDQQQNQPQFKYNIKFGQIYLS 129

Query: 99   KPMM---TESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK----------KGHDGEE 145
            +P +   +E     ++++P  ARLRNLTYS+PLYVD+ ++ I               GEE
Sbjct: 130  RPTVDTKSEQIEAYSSVYPNDARLRNLTYSSPLYVDIHEKKITLRPGSTANIYTAQVGEE 189

Query: 146  VTETQDF-------TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
              +T DF        ++ +G +PIMLRS YC L  +  +D+T++GECP+D GGYFIING 
Sbjct: 190  --DTDDFIVQSKIHNQIPLGSIPIMLRSVYCML--SEVQDVTDVGECPFDSGGYFIINGG 245

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKV+IAQE+M+TNHVYVFKK   +K++YVAE+RS  E   R PS  F++M  +   K G 
Sbjct: 246  EKVIIAQERMATNHVYVFKKAM-SKFSYVAEIRSSQEGGYRAPSGFFIKMEPKQGNKKGG 304

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
             G  I AT+PYIR +IPI+I+FRAL   ADK+I++HI Y+  D QMMELLRPSLEEA  +
Sbjct: 305  IGGLIHATIPYIRQDIPIVILFRALSCQADKEIIKHIIYNLNDGQMMELLRPSLEEAVAV 364

Query: 319  QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
             +  VALDYIGKRG T+G +++KR+ +A+EILQKEMLPHVG GD    +KAY+ GY++HR
Sbjct: 365  LSNTVALDYIGKRGNTLGASQEKRMNHAEEILQKEMLPHVGIGDTSYDRKAYFIGYMVHR 424

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LLL ALGRR  DDRDHYGNKRL+LAG LL GLF  LF+K+ +++ + ++K +    ++++
Sbjct: 425  LLLGALGRRPLDDRDHYGNKRLELAGGLLQGLFLQLFKKVVKEMESTLKKSILKSSEIDV 484

Query: 439  QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
              A+  +TIT GL+YSLATGNWG   +   RAGV+QVLNRLTY STLSHLRRLN+PI R 
Sbjct: 485  APAVNKRTITKGLQYSLATGNWGVQGSRDIRAGVAQVLNRLTYTSTLSHLRRLNTPIERS 544

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GK A PRQLHN+QWG++CPAETPEG ACGLVKNLALM YITVG+    I + L+E G   
Sbjct: 545  GKQAAPRQLHNTQWGVICPAETPEGGACGLVKNLALMSYITVGTDKTHISKMLDELGINK 604

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELR 618
              E+  + + + TK+F+NG W+G+H  P+ LVK LR LRR   V+ +V +VRD+R +E+R
Sbjct: 605  LHELDESDLNKYTKVFLNGMWMGVHHTPDELVKHLRVLRRTGAVDMQVSIVRDVREREVR 664

Query: 619  IYTDYGRCSRPLFIVEKQR--LLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEE 676
            I+ D GRC+RPLFIV++    L IK + + AL++        W +L+ +G +E IDTEEE
Sbjct: 665  IWCDSGRCARPLFIVDRDHDTLFIKNQHVQALRENTM----NWDNLLEQGLVELIDTEEE 720

Query: 677  ETTMISMTINDLVQARLHPEEAYA------DTYTHCEIHPSLILGVCASIIPFPDHNQSP 730
            E+ MI+M   +LV+ R    E  +        YTH EIHPS+ILG+  SIIPFPDHNQSP
Sbjct: 721  ESIMIAMDFRELVEKRSSANEGKSRKGGSRQPYTHAEIHPSMILGILGSIIPFPDHNQSP 780

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMG+Y+TN+Q RMDTLA+VLYYPQ+PLVTT+ ME+L F +LPAG NA+V
Sbjct: 781  RNTYQSAMGKQAMGVYITNFQQRMDTLAHVLYYPQRPLVTTQPMEYLRFGELPAGQNAVV 840

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AIACYSGYNQEDSVIMNQS+IDRG FRS+F+R+Y D E+K G  + E+F +P R  T GM
Sbjct: 841  AIACYSGYNQEDSVIMNQSAIDRGLFRSVFYRTYSDHERKKGNFLLENFEKPKRDTTAGM 900

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETG 910
            +  +Y+KL+DDG+  PG RVSG D+IIGKT P+ ++ A+ + SR TR D S  LR +E G
Sbjct: 901  KTSTYEKLEDDGIIAPGVRVSGSDIIIGKTVPLPEESAKQKTSRQTRLDMSTPLRSNENG 960

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VD V++TT+++G +FVK++VR VRIPQIGDKFSSRHGQKGT G+TY QED+P+T EGI 
Sbjct: 961  IVDTVVVTTDSEGFKFVKIKVRVVRIPQIGDKFSSRHGQKGTCGITYRQEDLPFTREGIV 1020

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDIIVNPHAIPSRMT+GQLIEC++GK+++  G EGDATPFTD  V+  S+ LH  GYQ R
Sbjct: 1021 PDIIVNPHAIPSRMTVGQLIECLLGKISSLSGNEGDATPFTDANVNYFSEMLHSLGYQKR 1080

Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
              E M+NGHTGR+L A IF+GPTYYQRLKHMVDDKIHSR RGP+Q LTRQP EGR+RDGG
Sbjct: 1081 ANEVMFNGHTGRKLEAQIFIGPTYYQRLKHMVDDKIHSRARGPLQNLTRQPVEGRARDGG 1140

Query: 1091 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNK 1150
            LRFGEMERDCMI+HG++ +LKERLF  SD YRVH+C  CG++A AN+K+  F+C  C NK
Sbjct: 1141 LRFGEMERDCMISHGSAAWLKERLFQVSDEYRVHICNVCGMMATANIKQQQFKCDACDNK 1200

Query: 1151 TDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            T   QV IPYA KL+ QELMAM +A R++T
Sbjct: 1201 TSFSQVFIPYAFKLMIQELMAMNLAVRIIT 1230


>gi|378755195|gb|EHY65222.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida sp. 1 ERTm2]
          Length = 1137

 Score = 1405 bits (3636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/1159 (57%), Positives = 879/1159 (75%), Gaps = 34/1159 (2%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            ++TQED W V+SA+F++KGLVRQQLDSF+EFIQ+TMQE+VDE++ I +     H+P  + 
Sbjct: 3    KLTQEDCWKVVSAFFKDKGLVRQQLDSFNEFIQSTMQEVVDENSKIVLM---AHSPTGEE 59

Query: 82   DFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
            + A   Y I F QIY+SKP  +TE DG T+ +FP  AR+R+LTYSA LY+D+    +K  
Sbjct: 60   EKARK-YTIEFKQIYVSKPPTITEPDGRTSPMFPNDARVRSLTYSASLYIDI----VKTE 114

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
            H G+E  E++ + ++ IG +PIMLRS YC      +KD+  + EC YDQGGYFI+NGSEK
Sbjct: 115  HIGDEEVESRTYKRMPIGSIPIMLRSLYCVYSNTDDKDMNRIEECTYDQGGYFIVNGSEK 174

Query: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
            VLIA E+M++N VY+FKK  P+ Y Y AE+RS+ +   R PS++ +R+++R+S      G
Sbjct: 175  VLIAHERMASNLVYIFKKAPPSPYLYTAEMRSVPDHGLRLPSSLTIRLVARSSDNASGGG 234

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
             ++RA LP+ + ++P++++FRALGFV+DK+ILEHICYDF DT+M+ +LRPS+EEAFVIQ+
Sbjct: 235  YFLRALLPHAKQDVPVVVIFRALGFVSDKEILEHICYDFSDTEMLSMLRPSIEEAFVIQD 294

Query: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            Q VALDYIGKR A  G +++KRIK+AK++ Q+E LPHVGT +FCETKKAY  GY I++LL
Sbjct: 295  QGVALDYIGKRVAPAGFSKEKRIKFAKDLFQREFLPHVGTKEFCETKKAYLLGYTINKLL 354

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
            + ALGRR+E+DRDHYG KRLDLAGPL+ GLFRMLF+K++ ++  Y+Q+C+D  KD+NL  
Sbjct: 355  MVALGRRSEEDRDHYGRKRLDLAGPLMAGLFRMLFKKMSNELAKYMQRCIDGNKDLNLIV 414

Query: 441  AIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 499
             ++  T+T+GL+YSLATGNWG Q+ +   RAGV+QVLNR  Y STLSHLRR+N+PIGR+G
Sbjct: 415  GLRTSTLTNGLRYSLATGNWGEQSKSMQARAGVAQVLNRYNYISTLSHLRRVNTPIGRDG 474

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            KLAKPRQLH+S WGM+CPAETPEGQACGLVKN ALM +I+VGS +  ++E LEE G E  
Sbjct: 475  KLAKPRQLHSSHWGMVCPAETPEGQACGLVKNFALMSHISVGSNSSIVVELLEECGLEGL 534

Query: 560  EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 619
            EE+SP  I  ATK+ VNG WVG+HR P+ L+ TL+ LRR  ++++E+G+VRD+R KE+RI
Sbjct: 535  EEVSPTAIAGATKVLVNGSWVGVHRSPDDLIGTLKYLRRSGELSSEIGIVRDLREKEIRI 594

Query: 620  YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 679
             TD GR  RPLFIVEK  L I+        +        W +L+A G +E++D EEEET 
Sbjct: 595  NTDGGRACRPLFIVEKGVLRIEH-----FLEANRHRAFTWDELMADGCVEFLDVEEEETA 649

Query: 680  MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
            MI++  +DL    +         YTHCEI P+ +LGVCAS++PFPDHNQSPRNTYQSAMG
Sbjct: 650  MIAVKTSDLRNTEI--------MYTHCEIQPATMLGVCASVVPFPDHNQSPRNTYQSAMG 701

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMG+Y TN+  RMD+L+ VL YPQKPLV T++M  L FR+LP+G NA+VAIACYSGYN
Sbjct: 702  KQAMGMYATNFLMRMDSLSNVLCYPQKPLVITQSMNFLQFRELPSGQNAMVAIACYSGYN 761

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDSV+MN+ ++DRG FRS F+R+Y D E +     +E F +PDR +   M++ +Y+KLD
Sbjct: 762  QEDSVVMNRGAVDRGLFRSFFYRTYSDMESRTKPEEQECFMKPDRRSVQRMKNANYEKLD 821

Query: 860  DDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTT 919
             DGL PPGTRVSGEDV+IGK   +S  +          +D S ++R +E+G+VD+V+LTT
Sbjct: 822  IDGLVPPGTRVSGEDVLIGKA--VSTPDGY--------KDASTTMRGTESGVVDRVILTT 871

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
              DG R+ ++RVRS R PQ+GDKF+SRHGQKGT+G+  + EDMP+T +GITPDII+NPHA
Sbjct: 872  K-DGYRYARIRVRSARTPQMGDKFASRHGQKGTIGIMLSPEDMPFTADGITPDIIINPHA 930

Query: 980  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
            IPSRMTIG L+EC++GKV+   GKEGDATPFT ++V+ IS+ L K GYQ RGFE MY+G 
Sbjct: 931  IPSRMTIGHLVECLLGKVSCMTGKEGDATPFTGLSVEEISEELQKHGYQKRGFEVMYSGF 990

Query: 1040 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1099
            TGR++ + IF+GPTYYQRLKHMV DKIH+R  GPVQILTRQP EGRSRDGGLRFGEMERD
Sbjct: 991  TGRKMRSQIFIGPTYYQRLKHMVADKIHARAHGPVQILTRQPVEGRSRDGGLRFGEMERD 1050

Query: 1100 CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 1159
            CMI+HGA+ FLKERL D SD + V +C  CGL    N  +  + C+ C  +T++  V++P
Sbjct: 1051 CMISHGAAMFLKERLCDVSDKFEVFICNDCGLFCAGNKDRGLYLCQLCGTRTNVSMVYMP 1110

Query: 1160 YACKLLFQELMAMAIAPRM 1178
            YA KLL QE+M M I+ +M
Sbjct: 1111 YAFKLLVQEMMTMCISVQM 1129


>gi|389626335|ref|XP_003710821.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
            70-15]
 gi|351650350|gb|EHA58209.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
            70-15]
 gi|440465319|gb|ELQ34645.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae Y34]
 gi|440478473|gb|ELQ59304.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae P131]
          Length = 1276

 Score = 1405 bits (3636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 699/1265 (55%), Positives = 892/1265 (70%), Gaps = 87/1265 (6%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            M++  DYE      E D+E  IT ED W VIS+YF+EKGLV QQ+DS++EF  +T+Q IV
Sbjct: 7    MDEYADYEAGDYDAENDDE--ITAEDCWNVISSYFDEKGLVSQQIDSYNEFTTSTIQGIV 64

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            DE + + +   +  +  +        Y+I  G I +++P + E+DG+ +TL P   R RN
Sbjct: 65   DEYSVLTLDNPNPPDTFEGKPIRLRRYEIMLGNILVTQPTVKETDGKVSTLVPYECRDRN 124

Query: 122  LTYSAPLYVDVTKRVI------------------------------------KKGHDGEE 145
            LTYS PLYV +TK+V                                      K H+ +E
Sbjct: 125  LTYSCPLYVKLTKKVNVAVEEDIPLHELNDEQREEMQRTNEHPTTIRWELDRDKSHNPDE 184

Query: 146  VTETQDFTK-VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 204
                +     ++IGK+P+M++S  C L    E +L  L ECPYDQGGYFIINGSEKVLIA
Sbjct: 185  KISGEKMADMIYIGKIPVMVKSRICYLRSQPESELFLLNECPYDQGGYFIINGSEKVLIA 244

Query: 205  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 264
            QE+ + N V VFKK QPNKY Y AE+RS  E  +R  ST+ +++ S+  +  GS GQ I 
Sbjct: 245  QERSAANIVQVFKKAQPNKYLYQAEIRSALEKGSRLVSTLTMKLTSKGDSTRGSFGQTIH 304

Query: 265  ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVA 324
              LPY   ++PI IVFRALG V+D+DIL HI  D  DTQM+E+LRPS+EEAF IQ+++VA
Sbjct: 305  LNLPYTSGDLPIAIVFRALGVVSDEDILNHIVLDKNDTQMLEMLRPSIEEAFCIQDREVA 364

Query: 325  LDYIGKRGATVG---VTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 381
            LD+I KR    G    +R  R+K A++ILQK+ LPH+   + CET+KA++ GY++H++L 
Sbjct: 365  LDFIAKRVGKDGGHSNSRHLRLKVARDILQKDTLPHISQAEGCETRKAFFLGYMVHKILQ 424

Query: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 441
            CALGRR  DDRDH+G KRLDLAGPLL  LFR + RKLT D+   +++C+D G+D +L  +
Sbjct: 425  CALGRRDVDDRDHFGKKRLDLAGPLLAKLFRGIIRKLTNDMMGGLRRCIDAGRDFDLTAS 484

Query: 442  IKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 500
            +K  T+T+GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GK
Sbjct: 485  LKPNTLTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGK 544

Query: 501  LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
            LAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  ++VG+ A PI +FL   G +  E
Sbjct: 545  LAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCMVSVGTPAEPIYDFLVARGMDVLE 604

Query: 561  EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIY 620
            E  P+     +KIF+NG WVG+    E LV  +  LRR+  V+ EV ++ D+R  E RI+
Sbjct: 605  EYEPSNSSSTSKIFINGTWVGVANKIEELVDLVYDLRRKSRVDPEVSLIHDVREGEFRIF 664

Query: 621  TDYGRCSRPLFIVEKQ----------RLLIKKRDIIALQQRE----SPEDGG---WHDLV 663
            +D GR  RPLF+V ++           L++ K  +  L   +    SP D G   W  L 
Sbjct: 665  SDAGRVMRPLFVVNQKDDPRTGAQAGSLVLTKEHVAKLHADKDNNLSPGDEGHYGWQGLK 724

Query: 664  AKGFIEYIDTEEEETTMISMTINDLVQAR--------LHPEEAY---------------- 699
            + G ++ +D E+EET MI M+ +DL + R        L   EA+                
Sbjct: 725  SDGVLDLMDAEQEETAMICMSPSDLDKFRALKFGGATLDELEAFDKNDINRRLNTKINPT 784

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
               YTHCEIHPS++LG+CASIIPFPDHNQSPRN YQSAMGKQAMG ++TNY  RMDT+A 
Sbjct: 785  THMYTHCEIHPSMLLGICASIIPFPDHNQSPRNCYQSAMGKQAMGFFLTNYNRRMDTMAN 844

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQS+IDRG FRSL
Sbjct: 845  ILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSTIDRGLFRSL 904

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            FFRSY D EK++G  + E F +P R++T+ ++ G+YDKL+DDG+  PGTRVSGED+IIGK
Sbjct: 905  FFRSYTDSEKRVGINMVEKFEKPFRADTLRLKQGTYDKLEDDGIVAPGTRVSGEDIIIGK 964

Query: 880  TTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            T PI  D  + GQ + ++T+RD S  LR +E+G+VDQV++TTN DGL++VKVRVR+ +IP
Sbjct: 965  TAPIPADNQELGQRTVQHTKRDASTPLRSTESGIVDQVIVTTNQDGLKYVKVRVRTTKIP 1024

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKF+SRHGQKGT+G+TY  EDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV
Sbjct: 1025 QIGDKFASRHGQKGTIGVTYRHEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLLSKV 1084

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            A   G EGDATPFT+VTVD++S  L + GYQ RGFE +Y+GHTGR+L A +F GPTYYQR
Sbjct: 1085 ATLKGMEGDATPFTEVTVDSVSNLLREHGYQSRGFEVLYHGHTGRKLRAQVFFGPTYYQR 1144

Query: 1058 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 1117
            L+HMVDDKIH+R RGPV I+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ 
Sbjct: 1145 LRHMVDDKIHARARGPVNIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEV 1204

Query: 1118 SDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAP 1176
            SDA+R H+C  CGL+  IA+L + +FECR C+NKT I QVHIPYA KLLFQEL +M IA 
Sbjct: 1205 SDAFRAHICGICGLMTPIADLTRKTFECRPCRNKTKIAQVHIPYAAKLLFQELASMNIAT 1264

Query: 1177 RMLTK 1181
            RM T+
Sbjct: 1265 RMFTE 1269


>gi|2654279|emb|CAA47069.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
          Length = 1194

 Score = 1404 bits (3634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/1189 (57%), Positives = 872/1189 (73%), Gaps = 31/1189 (2%)

Query: 7    DYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
            DY  QH+ + +DE   ITQEDAWAVI AYF++ GLV QQ+ SFD F+  T+Q+IV E+  
Sbjct: 19   DYYNQHKMDIDDE---ITQEDAWAVIRAYFDQHGLVSQQISSFDRFLSYTVQDIVTENNT 75

Query: 67   IEIRPESQHNPGQQSDFAETI-YKISFGQIYLS-KPMMTESDGETATLFPKAARLRNLTY 124
            I I+PE Q  PG  ++  E I Y I  GQ+ ++ KP   E D +   +FP  ARLRNLTY
Sbjct: 76   ISIQPELQFAPGSMNESRENIKYDIILGQVRVNEKPRFKEFDDKYNVIFPNEARLRNLTY 135

Query: 125  SAPLYVDVTKRVIKKGHDGEEVT-ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
               LYV+V K+      DG EV  + Q   +V++GKVP+M+RS +C+L    E +  E+ 
Sbjct: 136  QTSLYVEVKKQDKVVEQDGSEVIIDEQTEKEVYMGKVPVMVRSGFCSLNGIDESERWEMK 195

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
            EC +DQGGYFIING EKV++A E+M+ N VYVF K+QP+K+++VAEVRS  ++ NRPP+ 
Sbjct: 196  ECFHDQGGYFIINGGEKVIVAHERMANNFVYVFHKKQPSKFSWVAEVRSQVDASNRPPNQ 255

Query: 244  MFVRMLSRTSAKGGSS-------GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC 296
              ++M S+   + G S       GQ + A++PYI  +IP+ I+FRAL  ++DK+IL+ IC
Sbjct: 256  FSIKMYSKGQRRAGGSFSGGKIFGQTLCASIPYINADIPVAILFRALNCISDKEILDRIC 315

Query: 297  YDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLP 356
            YD  D+ MME +R SLEE      Q+ AL YIG RG   GV R++RI++A+EIL++  LP
Sbjct: 316  YDSTDSHMMEAMRASLEEGTPFLTQEDALSYIGSRGTAGGVGREERIRHAREILKRHFLP 375

Query: 357  HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR 416
            HV T D CE++K+Y+ GY+ HRLL   LGR  EDDRDHYG KRLD+AG LLG LFR LFR
Sbjct: 376  HVSTKDSCESQKSYFIGYMCHRLLNAHLGRIKEDDRDHYGKKRLDMAGSLLGMLFRNLFR 435

Query: 417  KLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG--TRAGVSQ 474
            +  ++   Y++   D G  +N+  A K   I+ GLKY+LATGNWG  NAAG  ++ GVSQ
Sbjct: 436  RFVKEAGRYLKAQADKGDSLNITKAFKKDIISDGLKYALATGNWG-TNAAGEVSKTGVSQ 494

Query: 475  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 534
            VLNRLT+ASTLSHLRRLN+P+ + GKL KPRQLHN+ WGM+CPAETPEGQACGLVKNL+L
Sbjct: 495  VLNRLTFASTLSHLRRLNTPLQKSGKLTKPRQLHNTHWGMVCPAETPEGQACGLVKNLSL 554

Query: 535  MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 594
            M +++VGSAA  + E LE +GTEN   ISP+ I ++TK+FVNGCW+GIH + E L+  ++
Sbjct: 555  MAFVSVGSAAERLREILENYGTENLVSISPSDIHESTKVFVNGCWIGIHNESEDLINNIK 614

Query: 595  RLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESP 654
             +RR + +  E+ +VRDI  +E++ YTD+GR  RPLFIV+  RL++KK  ++ LQ  E  
Sbjct: 615  LMRRALLIPKEISIVRDIPNREVKFYTDHGRVQRPLFIVDDNRLILKKTHVVRLQDHERS 674

Query: 655  EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLIL 714
            +   + D + +G +E++D EEEET+MI+M + DL          Y  TYTHCEIHPS+IL
Sbjct: 675  DSMNFDDTLKEGLVEFLDVEEEETSMIAMNVGDL------ENRNYCSTYTHCEIHPSMIL 728

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            GVCASIIPFPDHNQSPRN YQSAMGKQAMG+Y +NYQ RMDTLA+VLYYPQKPLV  R++
Sbjct: 729  GVCASIIPFPDHNQSPRNCYQSAMGKQAMGVYCSNYQIRMDTLAHVLYYPQKPLVVARSL 788

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            +  H ++LP G ++IVAI CY+GYNQ DSVIM+Q+ IDRG FRS+F+++  +   ++  L
Sbjct: 789  DFPHVKELPPGCDSIVAITCYTGYNQVDSVIMSQAPIDRGCFRSVFYKNIFEIPVRVERL 848

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT---PISQDEAQGQ 891
            ++     PD S  +G R+G Y KLD DGL  PG  V G+D+IIGKT     +  DE   Q
Sbjct: 849  LR----YPD-STVVGRRNGDYTKLDIDGLIFPGKNVLGDDIIIGKTALPRNLFNDEMDDQ 903

Query: 892  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
             +   ++D S SLRHSE G++D V+LT+N +G  F KV++R++RIPQIGDKF+SRHGQKG
Sbjct: 904  TN-LIKKDDSTSLRHSEKGIIDSVILTSNEEGDSFTKVKMRAIRIPQIGDKFASRHGQKG 962

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            TVGMTY QED+P+T EGI PDIIVNPHAIPSRMTIG LIEC+  KVA   G+EGDATPF 
Sbjct: 963  TVGMTYRQEDIPFTQEGIIPDIIVNPHAIPSRMTIGHLIECLASKVACFKGEEGDATPFQ 1022

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
            DVTV++IS  LH+ GYQ RG E MY+G TGR++  MIFLGPTYYQRLKHMVDDKIHSR R
Sbjct: 1023 DVTVEHISNDLHRLGYQKRGNEVMYDGWTGRKMDTMIFLGPTYYQRLKHMVDDKIHSRSR 1082

Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
            GP+QILTRQP EGRSR GGLRFGEMERDCM++HGA+ FLKERLFD SD Y VHVC  CGL
Sbjct: 1083 GPLQILTRQPTEGRSRHGGLRFGEMERDCMVSHGAARFLKERLFDVSDCYTVHVCRICGL 1142

Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I  ANL++  + CRGC+N T+I QV +PYACKLLFQELMAM IAPRM+T
Sbjct: 1143 ICEANLRQQKYLCRGCQNSTNICQVGLPYACKLLFQELMAMQIAPRMIT 1191


>gi|399216338|emb|CCF73026.1| unnamed protein product [Babesia microti strain RI]
          Length = 1202

 Score = 1402 bits (3629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 675/1179 (57%), Positives = 866/1179 (73%), Gaps = 32/1179 (2%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            ++E  IT +D+W VIS++F+  GLV QQ++SFD+F+   MQEIVDE   IEIRP+ Q+ P
Sbjct: 33   EKEPSITDDDSWTVISSFFKTHGLVHQQIESFDDFVTYRMQEIVDEYPPIEIRPQPQYRP 92

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV- 136
              + +    IYK+ FGQ+ L++P + E +G T  ++P+ ARLRNLTYS+ +YVD+ + + 
Sbjct: 93   EDEIE-VNVIYKLKFGQLSLNRPSVDEKEGVTKHIWPQEARLRNLTYSSQIYVDIDQEIY 151

Query: 137  IKKGHDGEEVTETQ-DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 195
            I     G+E  + +  + ++ +GK+P+ML+S YC     SE DL ++GECPYDQGGYFI+
Sbjct: 152  IYDEAKGQETLQDRTSYPRISLGKIPMMLKSMYCWTRNVSEDDLADIGECPYDQGGYFIV 211

Query: 196  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAK 255
             G E+VLIAQE+M+ N +YVFKK+QP+K+++VAE+RS  E  ++  S   ++M ++ +  
Sbjct: 212  GGGERVLIAQERMANNFIYVFKKKQPSKFSWVAEIRSQME-YSQGTSAFSIKMKAKQATA 270

Query: 256  GGSSGQY-----IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRP 310
                 ++     + ATLPYIRT+IP+ I+FRALG VADKDIL+ I YDF D QM+ L++P
Sbjct: 271  NVIGNRFRSYDQLVATLPYIRTDIPVAILFRALGCVADKDILQRIAYDFDDKQMLNLMKP 330

Query: 311  SLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAY 370
            +LE+A     Q   LD+IGKRG TVG  RDKRI+YAK++L+KE+LPHVGT    E+KK Y
Sbjct: 331  TLEDALDFTTQDACLDFIGKRGPTVGAPRDKRIQYAKDLLRKEVLPHVGTELGVESKKCY 390

Query: 371  YFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 430
            + GY++HRLLL  LGR  +DDRDH+G KRLD+AGPL+   F  LFRK+ +D +  +Q  +
Sbjct: 391  FIGYMVHRLLLAKLGRINQDDRDHFGKKRLDMAGPLMASSFGTLFRKMAKDAKRILQHQI 450

Query: 431  DNGKDVNLQFAIK-AKTITSGLKYSLATGNWGQ-ANAAGTRAGVSQVLNRLTYASTLSHL 488
            D G+  ++  AI+ A  IT GL+Y L TGNWG+  +    R GVSQVLNRLT+AS LSHL
Sbjct: 451  DCGRTFDVAGAIRSASQITQGLQYQLLTGNWGKDRDGKVVRTGVSQVLNRLTFASCLSHL 510

Query: 489  RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
            RRLN+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM  I+VG A+  I 
Sbjct: 511  RRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCSISVGGASSTIC 570

Query: 549  EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV 608
            E L E G ++ +E+ P VI    K+F+NG W+G   + + LV TL   RRR D++ E  +
Sbjct: 571  ELLTELGMDSLDEVPPEVIKDRVKVFINGTWIGCFDEADNLVNTLLHFRRRCDISHETSI 630

Query: 609  VRDIRLKELRIYTDYGRCSRPLFIV-EKQRLLIKK------RDIIALQQRESPEDGGWHD 661
            +++I  KE++I+TD GR  RPL +V +  RL +K+      RD   + +  S     W+ 
Sbjct: 631  IKEIVSKEVKIFTDAGRAMRPLLVVHDGNRLALKRSHVEKIRDGSYINECSSENTSAWNW 690

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
            LV  G +EYID EEEE  M+SM + DL     H    Y  TYTHCEIHP +ILGVCASII
Sbjct: 691  LVESGVVEYIDCEEEEMCMVSMFVQDL-----HSNSNYCSTYTHCEIHPCMILGVCASII 745

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPD NQSPRNTYQSAMGKQAMG+Y +N+  RMDTL+++LYYPQKPLV TRAME L FR+
Sbjct: 746  PFPDQNQSPRNTYQSAMGKQAMGVYSSNFNLRMDTLSHLLYYPQKPLVCTRAMEFLRFRE 805

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAGINAIVAI CYSGYNQEDS+IMNQSSIDRG FRS+F R+Y  EEK+ G++  E F R
Sbjct: 806  LPAGINAIVAIMCYSGYNQEDSLIMNQSSIDRGLFRSVFNRTYVSEEKQQGSVTIEKFER 865

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRD 899
            P+     GM+ G Y KLD DGL  PG+RV G+DVIIG+ +P   +QD A        +RD
Sbjct: 866  PNPQFVAGMKRGDYSKLDSDGLVEPGSRVLGDDVIIGRISPTLPNQDVA-------PKRD 918

Query: 900  HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 959
             S+ LR SE G+V  VLL+ N+ G RF KV+VRSVRIPQIGDKF+SRHGQKGT+G+TY  
Sbjct: 919  CSLCLRRSENGVVHSVLLSVNSKGSRFCKVKVRSVRIPQIGDKFASRHGQKGTIGITYRM 978

Query: 960  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 1019
            EDMP+T +GI PDII+NPHA+PSRMTIG L+EC++GKV A  G EGDATPF+ +TV  I+
Sbjct: 979  EDMPFTCQGIVPDIIMNPHAVPSRMTIGHLVECLVGKVGAIGGLEGDATPFSSLTVKEIA 1038

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
              LH+ GY+  G E +YNG+TGR L + IF+GPTYYQRLKHMV+DKIH+R RGPV +LTR
Sbjct: 1039 SKLHELGYERHGNEALYNGYTGRLLKSKIFIGPTYYQRLKHMVEDKIHARARGPVTMLTR 1098

Query: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK 1139
            QP EGRSRDGGLRFGEMERDCMI+HGA+  LKERLFDQSDAYRVHVC+ CGLI IA+L +
Sbjct: 1099 QPTEGRSRDGGLRFGEMERDCMISHGAAKVLKERLFDQSDAYRVHVCDMCGLIVIADLNR 1158

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
             SFEC  C NKT+I QV IPYACKLL QELM+MAI P++
Sbjct: 1159 GSFECSACDNKTNISQVSIPYACKLLLQELMSMAIYPKL 1197


>gi|294874302|ref|XP_002766888.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
 gi|239868263|gb|EEQ99605.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
          Length = 1171

 Score = 1401 bits (3627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 672/1172 (57%), Positives = 864/1172 (73%), Gaps = 50/1172 (4%)

Query: 57   MQEIVDESADIEIRPE----------SQHNPGQQSD-----------------------F 83
            MQEIVDE   I I P+          SQ++P                            +
Sbjct: 1    MQEIVDECPPITIIPQNQPVCRLNGLSQYDPNTSKQQQMQQNVGYVYELSRLGREGPGVY 60

Query: 84   AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDG 143
             ++ + + FGQ+ L+KP + E DG   +L P  ARLRNLTYS+P+YV+VT+         
Sbjct: 61   MDSSFPVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTYALADPD 120

Query: 144  EEVTETQ-----DFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
            +  +E Q      ++K+ IG++P+ML+S YC L   +E+ L E+GEC +DQGGYFIINGS
Sbjct: 121  DPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYFIINGS 180

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKVLIA E+M+ N VY F+K+QP KY ++ E+RS AE      S   V+ML+    +  +
Sbjct: 181  EKVLIAMERMANNFVYCFQKKQPAKYTWICEIRSQAEGM-LSTSGFSVKMLANLGGRSAA 239

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
             GQ +  ++PYI  +IP++I+FRALG V+D++++E I YDF DTQMM LLRPS+EEA  I
Sbjct: 240  RGQIV-CSMPYINADIPVVILFRALGCVSDREVIERIVYDFSDTQMMFLLRPSIEEAMPI 298

Query: 319  QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
             +Q+VALD+I KRG T+G ++  RI+YAKE+LQKE+LPH+G   +CE +KAY+ GY++HR
Sbjct: 299  MSQEVALDFIAKRGPTIGTSKSGRIQYAKELLQKELLPHLGVKQYCEPRKAYFIGYMVHR 358

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LLL  LGR AEDDRDH+G KR+D+AGPL+   F  LFRKL +D +  +Q+ VD+G+  +L
Sbjct: 359  LLLGQLGRIAEDDRDHFGKKRMDMAGPLMAASFAQLFRKLVQDSKRILQRQVDSGRHFDL 418

Query: 439  QFAIK-AKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
              AI+ A +IT GL+Y LATGNWG   +    R GVSQVLNRLT+ ST+SHLRR+N+P+ 
Sbjct: 419  NSAIRSASSITDGLRYQLATGNWGIDKSGKSVRTGVSQVLNRLTFMSTMSHLRRMNTPLE 478

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R GKLAKPRQLHN+ WGM+CPAETPEGQA GLVKN+ALM  ITVGS    + +FL EWG 
Sbjct: 479  RSGKLAKPRQLHNTHWGMICPAETPEGQAVGLVKNIALMCTITVGSLPNVVYDFLNEWGL 538

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            EN +EI+P+ I   TK+F+NG WVG+H D  ML +TLR LRR+ D++ EV ++RD++  E
Sbjct: 539  ENLDEINPSQIKHMTKVFLNGQWVGMHADATMLCETLRDLRRKRDIDPEVSIIRDLQANE 598

Query: 617  LRIYTDYGRCSRPLFIVE---KQRLLIKKRDIIALQQRE-SPEDGGWHDLVAKGFIEYID 672
            LRI+TD GR  RPL++V+    Q+L IK+  + AL++   + E GGW  LV +G +EYID
Sbjct: 599  LRIFTDGGRACRPLYVVQPPPSQKLCIKREHVEALRRMLLNNEHGGWDMLVEEGLVEYID 658

Query: 673  TEEEETTMISMTINDL--VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 730
             EEEET M++M ++DL   Q R     +Y  TYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 659  AEEEETCMVAMFVDDLRNAQRRKSKASSYCHTYTHCEIHPSLILGVCASIIPFPDHNQSP 718

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMG+Y TN+  R+DT+A+VL YPQKPLV TRAME+L FR+LPAG NAIV
Sbjct: 719  RNTYQSAMGKQAMGVYATNFNMRIDTMAHVLNYPQKPLVGTRAMEYLRFRELPAGNNAIV 778

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AI  YSGYNQEDS+IMN SSIDRGF RS+ F+SY  +EK+ G  V E+F  P  S T  M
Sbjct: 779  AIMTYSGYNQEDSLIMNASSIDRGFMRSVHFKSYMADEKRQGAQVVEEFRAPSWSKTYAM 838

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQASRYTRRDHSISLRHSET 909
            + G Y KLD+DGL  PGTRV G+D++IGK +PI +Q + +G+  +YT RD S++L+ ++ 
Sbjct: 839  KRGDYSKLDNDGLINPGTRVHGDDILIGKVSPIPNQTDEEGRIQKYTERDCSVALKGADN 898

Query: 910  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
            G+VDQV+L+ NA G +F K+RVR++R+P IGDKF+SRHGQKGT+G++Y QEDMP+T  G+
Sbjct: 899  GVVDQVMLSVNARGHKFTKIRVRTLRVPTIGDKFASRHGQKGTMGISYRQEDMPFTQFGV 958

Query: 970  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1029
             PDII+NPHA+PSRMTIG L+EC++GKV    G+EGDATPF+ VTV  I   LH+ G+Q 
Sbjct: 959  VPDIIMNPHAVPSRMTIGHLVECLLGKVGLLSGEEGDATPFSQVTVHEIMARLHELGFQR 1018

Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1089
            +G E MYNGHTG RL A IF+GPTYYQRLKHMV+DKIHSR RGP+Q+LTRQP EGR R+G
Sbjct: 1019 QGREVMYNGHTGLRLPAKIFIGPTYYQRLKHMVEDKIHSRARGPMQMLTRQPMEGRGREG 1078

Query: 1090 GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN 1149
            GLRFGEMERDCMI+HGA+ FLKERLFD SDAYRVHVC++CG+ AIANL KN +ECR CKN
Sbjct: 1079 GLRFGEMERDCMISHGAAKFLKERLFDISDAYRVHVCDNCGMFAIANLYKNHYECRACKN 1138

Query: 1150 KTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
             T I QVHIPYACKLLFQELM M+I P+++ K
Sbjct: 1139 ST-ISQVHIPYACKLLFQELMTMSIMPKLVLK 1169


>gi|209879223|ref|XP_002141052.1| RNA polymerase beta subunit [Cryptosporidium muris RN66]
 gi|209556658|gb|EEA06703.1| RNA polymerase beta subunit, putative [Cryptosporidium muris RN66]
          Length = 1184

 Score = 1398 bits (3619), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1188 (57%), Positives = 863/1188 (72%), Gaps = 42/1188 (3%)

Query: 19   EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78
            +++E+ QED+WA+I  YF ++GLV QQL+SF++FI   +QEIVDE   I I P+ Q+ P 
Sbjct: 6    KDDEVQQEDSWALIGTYFRDRGLVSQQLESFNDFIMYKLQEIVDEHPPIVIIPQPQYRPD 65

Query: 79   QQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
            +Q D     Y + FGQ+ LS+P + E +G    L+P  ARLR+LTY++P++VD  +++ +
Sbjct: 66   EQID-TSIQYVLKFGQLSLSRPSVEEREGVARGLWPSEARLRSLTYASPVFVDAEQKIYR 124

Query: 139  KGHDGEE-VTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 197
               DG + +     ++++ + K+PIMLRS YC  +  SE++L   GEC YDQGGYFIING
Sbjct: 125  MHEDGTQTLLHETTYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECIYDQGGYFIING 184

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
             EKVLI QE+M+ N VY+F+K+QP+KY ++AEVRS  E   +  S   V++      +GG
Sbjct: 185  MEKVLIGQERMANNFVYLFQKKQPSKYTWIAEVRSNREGM-QATSGFSVKL------RGG 237

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            S GQ + ATLPYIRT+IPI I+FRALG ++DKDIL    YDF D+QM+ +LRPSLEE F 
Sbjct: 238  SQGQVV-ATLPYIRTDIPIAILFRALGVLSDKDILLRCVYDFSDSQMLAILRPSLEETFE 296

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
              +Q+V LD+IGKRG TVG  R+KRI+YA+E+L++E+LPHVG    CE +KAY+ GY++H
Sbjct: 297  FSSQEVCLDFIGKRGPTVGAIREKRIQYARELLEREVLPHVGVTIGCEFRKAYFIGYMVH 356

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RL + ALGR  EDDRDH+G KRLDLAGPL+   F   FRK+ +D+R  +Q+ +DNGK+ +
Sbjct: 357  RLCMGALGRVPEDDRDHFGKKRLDLAGPLVAASFGQSFRKMMKDMRRLLQRNIDNGKEFD 416

Query: 438  LQFAIK-AKTITSGLKYSLATGNWGQ-ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            +   I+ A  IT  L+Y  ATGNWG+  +    R GV+QVL+RLT+AS LS+LRRLN+P+
Sbjct: 417  VAGVIRSASYITQTLQYQFATGNWGKDRDGKIVRTGVAQVLSRLTFASALSYLRRLNTPL 476

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GREG LAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM  I+VG   + I  FL+EWG
Sbjct: 477  GREGTLAKPRQLHNTHWGMICPAETPEGHAVGLVKNLALMCEISVGYRPFAIRTFLDEWG 536

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             ++ +E+ P  I    K+F+NG WVG   D E  +  LR +RR  ++  E  +V D+  +
Sbjct: 537  MDSIDEVPPEDIKDKIKVFLNGNWVGCFDDSEDSITNLRMIRRSGEIPYETSIVLDVVNR 596

Query: 616  ELRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIALQQRESPED----------------GG 658
            E++++TD GR  RPL+IV E   L I+K  I  L   + PE+                GG
Sbjct: 597  EVKLFTDAGRSMRPLYIVGEDGELKIRKSHIATLLGIKMPENNSNEDMKILSEVDLPEGG 656

Query: 659  --------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 710
                    W DL+  G IEYID EEEET MI+M +NDL  AR      Y  TYTHCEIHP
Sbjct: 657  ISRDSDFTWDDLIKSGIIEYIDCEEEETAMIAMFMNDLRDAR-----GYCSTYTHCEIHP 711

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            SLILG+CASIIPFPDHNQSPRN YQSAMGKQAMG+Y +NY  RMDTL YVLYYPQKPLVT
Sbjct: 712  SLILGICASIIPFPDHNQSPRNVYQSAMGKQAMGVYTSNYNVRMDTLGYVLYYPQKPLVT 771

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TRAM ++ FR+LPAGIN IV I CYSGYNQEDS+IMNQSSIDRG FRS+FFR+Y  EEK+
Sbjct: 772  TRAMTYMRFRELPAGINCIVGIMCYSGYNQEDSLIMNQSSIDRGLFRSVFFRTYVSEEKQ 831

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 890
            +G+ + E F  P+     G+R G+Y  LD DGL  PG RV G+D+IIGK  PI  +E   
Sbjct: 832  IGSNLIEAFELPNPDEVSGLRFGNYGNLDRDGLIEPGNRVLGDDIIIGKFGPIPPEERDN 891

Query: 891  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
            +  R T+RD SI LR SE G+VD+VLL+TN+ G++F KV+VR++R+P IGDKF+SRHGQK
Sbjct: 892  RIERLTKRDCSIGLRSSEHGVVDEVLLSTNSKGVKFTKVKVRTIRVPHIGDKFASRHGQK 951

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GT+G+TY  EDMP+T +GI PDII+NPHAIPSRMTIG LIECI+GK  A  G EGDATPF
Sbjct: 952  GTIGITYRMEDMPFTQDGIVPDIIMNPHAIPSRMTIGHLIECILGKTCAIEGMEGDATPF 1011

Query: 1011 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 1070
            T VTV+ IS  LH  G+Q  G E MYNGHTGR+L + IF+GPTYYQRLKHMVDDKIH+R 
Sbjct: 1012 TKVTVEEISNRLHAAGFQRNGNEVMYNGHTGRQLESRIFIGPTYYQRLKHMVDDKIHARA 1071

Query: 1071 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 1130
            +G + +LTRQP EGRSR+GGLRFGEMERDCMI+HGA+  LKERLFDQ DAYRVHVCE CG
Sbjct: 1072 KGAITMLTRQPREGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQCDAYRVHVCELCG 1131

Query: 1131 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
            LI  A+L K  +EC+ C NK+ I QV +PYACKLL QELMAM+I PR+
Sbjct: 1132 LICTADLGKQHYECKVCSNKSQISQVCLPYACKLLLQELMAMSIYPRL 1179


>gi|300707573|ref|XP_002995989.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
 gi|239605241|gb|EEQ82318.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
          Length = 1143

 Score = 1397 bits (3615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1162 (56%), Positives = 871/1162 (74%), Gaps = 30/1162 (2%)

Query: 25   QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFA 84
            +E +W +IS +FE+KGLV QQ+DSFD+F++  MQE++DES  I +  +S  + G ++   
Sbjct: 7    KEYSWDIISKFFEQKGLVGQQIDSFDQFVKTKMQEVIDESPLITV--QSTLSAGNETRKK 64

Query: 85   ETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDG 143
             T+    FGQIY+SKP   TE+DG T TL P  ARLR++TY + LY+D+    +K     
Sbjct: 65   ITL---KFGQIYVSKPPSYTEADGTTITLTPNEARLRDITYLSQLYIDI----VKTTESE 117

Query: 144  EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLI 203
              V +   ++++  G +P+M++SSYC+ Y+ SE++L ++GEC YD GGYFIINGSEKV+I
Sbjct: 118  SGVVDQHRYSRIPFGSLPVMVKSSYCSTYKLSEEELIKIGECEYDVGGYFIINGSEKVII 177

Query: 204  AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI 263
            AQE+M++N +YVFKK QP  Y++ AE+RS+ E   + PS + +++    +         I
Sbjct: 178  AQERMASNTIYVFKKSQPASYSHYAEIRSVPEKGAKNPSAVSLKLCRNPNV--------I 229

Query: 264  RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQV 323
            R ++PY + EIP+ I++RALGF++DK+I +HI     D +M +LL+ S+ E+ V+Q+Q V
Sbjct: 230  RVSIPYAKQEIPLFIIYRALGFLSDKEITDHIITT-NDDEMFDLLKESILESAVVQDQNV 288

Query: 324  ALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 383
            ALDYIGKR A VG +R+KRI +AK++L KE+LPH+GT +FCETKKAY+ GY++ +LLL A
Sbjct: 289  ALDYIGKRAAPVGSSREKRINFAKDLLAKELLPHIGTQEFCETKKAYFLGYMVQKLLLVA 348

Query: 384  LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIK 443
            LGR+ EDDRDHYG KR+DLAGPLL  LFR L++KL  +   ++QKC++ G+D N+   +K
Sbjct: 349  LGRKREDDRDHYGKKRMDLAGPLLASLFRSLYKKLCSETAKHMQKCIEGGRDFNIALGLK 408

Query: 444  AKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            A TI  G +Y++ATGNWG QA+A  ++AGV+QVLNR  + STLSHLRR+N+PI +EGKLA
Sbjct: 409  ASTIAQGFRYAIATGNWGDQAHAMQSKAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLA 468

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI+VGS++ PI+EFLEE G E+ EEI
Sbjct: 469  KPRQLHNTHWGMICPAETPEGQACGLVKNLSLMAYISVGSSSEPIVEFLEECGLESLEEI 528

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
            S   +  ATK+FVNG WVGIH DPE L+ +LR LRR ++++ EV ++RDIR KE++I +D
Sbjct: 529  SHLQLQNATKVFVNGVWVGIHEDPEYLISSLRMLRRTLEIDKEVSIIRDIREKEIKIQSD 588

Query: 623  YGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMIS 682
             GR  RPLF+V+  +L I +    A   +E  +   W+D +  G IE++D EEEE +MI+
Sbjct: 589  SGRPCRPLFVVKNNKLCIDE----AYSNKEEIKRCTWNDFIENGLIEFLDVEEEEVSMIA 644

Query: 683  MTINDL--VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 740
            M+ + L  V+  L   E     YTHCEIHP+ ILG+CAS+IPFPDHNQSPRNTYQSAM K
Sbjct: 645  MSPDQLNSVKKDLRASEDLNINYTHCEIHPATILGICASVIPFPDHNQSPRNTYQSAMVK 704

Query: 741  QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 800
            QAMGIY TN+  RMDTL+ +L+YPQKPLVTT++ME++ F++LP G NAIVAIA Y+GYNQ
Sbjct: 705  QAMGIYATNFMLRMDTLSNILFYPQKPLVTTKSMEYIRFKELPPGQNAIVAIASYTGYNQ 764

Query: 801  EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 860
            EDS+IMNQS+IDRG FRS F+R+Y D+E        E+F +P RS  + MR+ +Y KLD+
Sbjct: 765  EDSIIMNQSAIDRGLFRSFFYRTYTDQENTTRPGTHEEFCKPLRSEVIRMRNLNYSKLDN 824

Query: 861  DGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR-YTRRDHSISLRHSETGMVDQVLLTT 919
            DG+ P GTRV+G+DV+IGK +PI   E   + +  Y ++D S S+R +E G VD V++T 
Sbjct: 825  DGIIPTGTRVTGDDVLIGKVSPILDPERSTKGNPVYLKKDSSTSMRRTEDGFVDSVIVT- 883

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
            N +G +F KV+VRS RIPQ+GDKF+SRH QKGTVG+T  QEDMP+T EGI PDII+NPHA
Sbjct: 884  NKEGYKFAKVKVRSCRIPQMGDKFASRHAQKGTVGITLNQEDMPFTSEGIVPDIIINPHA 943

Query: 980  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
            IPSRMTIG LIEC+MGK  A  G+EGDATPF  VTVDNIS+ L +  YQ RGFE MYNG 
Sbjct: 944  IPSRMTIGHLIECLMGKTCALTGEEGDATPFNGVTVDNISEKLKEYNYQQRGFEVMYNGM 1003

Query: 1040 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1099
            TG +L A I++GPTYYQRLKHMVDDKIH+R +GP+QILTRQP EGRSRDGGLRFGEMERD
Sbjct: 1004 TGHKLRAQIYIGPTYYQRLKHMVDDKIHARAKGPLQILTRQPVEGRSRDGGLRFGEMERD 1063

Query: 1100 CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 1159
            C+I+HGAS FLKERL D SD Y   +C+ CGLIAI   + N  EC+GC N+T++  V IP
Sbjct: 1064 CIISHGASAFLKERLMDVSDPYTCCICDLCGLIAIDTKRYN--ECKGCNNRTNLSLVEIP 1121

Query: 1160 YACKLLFQELMAMAIAPRMLTK 1181
            YA KLL QELM M IAPR+ T+
Sbjct: 1122 YAFKLLIQELMGMNIAPRIKTE 1143


>gi|429329468|gb|AFZ81227.1| DNA-directed RNA polymerase II subunit, putative [Babesia equi]
          Length = 1219

 Score = 1395 bits (3610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/1183 (56%), Positives = 866/1183 (73%), Gaps = 28/1183 (2%)

Query: 6    YDYEEQHQQEE--EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            YD+E +++  +  +  +E  + ED+W VI ++F   GLV QQ++SF++FI   MQEI+DE
Sbjct: 52   YDHESKYEAPKYLKGNQEGFSDEDSWKVIGSFFSTHGLVHQQIESFNDFITYRMQEIIDE 111

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
               IEI+P+ ++ P    + +   Y++ FGQ+ L+KP + E DG    ++P+ ARLRNLT
Sbjct: 112  HPPIEIKPQPRYRPDDDLE-SNVTYRLKFGQLSLNKPCVEEKDGVFKHIWPQEARLRNLT 170

Query: 124  YSAPLYVDVTKRVIKKGHD--GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 181
            Y++ +YVD+ +    K      E + +   + ++ +G++P+ML+S+YC     SE+DL +
Sbjct: 171  YASQIYVDIEQETYLKDETTGAETLQDKTTYPRIPLGRMPMMLKSTYCWTKGLSEEDLAD 230

Query: 182  LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE-SQNRP 240
            +GECPYDQGGYFI+NG E+VLIAQE+M+ N +YVFKK+QP+KY++VAE+RS AE SQ   
Sbjct: 231  VGECPYDQGGYFIVNGGERVLIAQERMANNFIYVFKKKQPSKYSFVAEIRSQAEFSQGIT 290

Query: 241  P-STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 299
            P S M    L    ++  S GQ + AT+PY+R +IP+ I+FRALG VAD+DIL+ I YDF
Sbjct: 291  PFSIMMKSSLGAPGSRFKSHGQLV-ATIPYLRADIPVPILFRALGCVADRDILQRIVYDF 349

Query: 300  QDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVG 359
            +D QM+ L+R +LEEA     Q+  LD+IGKRG TVG   + RI+YAK++L++ +LPHVG
Sbjct: 350  EDKQMLNLMRATLEEASDYVTQETCLDFIGKRGPTVGAPLETRIQYAKDLLRQHLLPHVG 409

Query: 360  TGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 419
            T    E KK Y+ GY+IHRLLL  LGR  EDDR+H+G KRLDLAGPL+   F  LFRK+ 
Sbjct: 410  TEPGSEGKKCYFLGYMIHRLLLSRLGRINEDDREHFGKKRLDLAGPLMASSFGTLFRKMA 469

Query: 420  RDVRAYVQKCVDNGKDVNLQFAIK-AKTITSGLKYSLATGNWGQANAAG-TRAGVSQVLN 477
            +D R  +Q+ +D G+  ++  AI+ A TIT GL+Y L TGNWG+       R GVSQVLN
Sbjct: 470  KDARRILQQQIDCGRAFDVAGAIRSATTITQGLQYQLLTGNWGRDREGKIVRTGVSQVLN 529

Query: 478  RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 537
            RLT+AS LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM Y
Sbjct: 530  RLTFASYLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCY 589

Query: 538  ITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLR 597
            I+VGS A  I EFL EWG ++ +E+ P V+    KIF+NG WVG   + + LV+TL  LR
Sbjct: 590  ISVGSVAATINEFLSEWGMDSLDEVPPEVVKDRVKIFINGTWVGCFDEADSLVRTLLELR 649

Query: 598  RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-QRLLIKKRDIIALQQRESPED 656
            RR D+++E  +VRDI  +E++I+TD GR  RPLFIVE    L I K  I  +   E    
Sbjct: 650  RRGDISSETSIVRDIVSQEVKIFTDAGRAMRPLFIVENGNTLAINKEHIAMIDNNEC--- 706

Query: 657  GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
              W  LV  G IEYID EEEE  MI M ++DL          Y  TYTHCEIHPS+ILGV
Sbjct: 707  -NWDGLVESGVIEYIDCEEEEMCMIGMFVDDL-----KANNTYCSTYTHCEIHPSMILGV 760

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPD NQSPRNTYQSAMGKQAMG+Y TN+  RMDTL ++LYYPQKPLV TR+ME 
Sbjct: 761  CASIIPFPDQNQSPRNTYQSAMGKQAMGVYATNFNLRMDTLCHILYYPQKPLVCTRSMEF 820

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAGINAIVAI CY+GYNQEDS+IMNQSSIDRG FRS F R+Y  EEK +G+ + 
Sbjct: 821  LRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSAFNRTYISEEKYVGSTIV 880

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYT 896
            E F RP  +N +G++ G Y KLD DGL  PG+RV G+D+IIG+T+   +++         
Sbjct: 881  ERFERPGTANILGLKRGDYTKLDADGLVEPGSRVMGDDIIIGRTSTADEED--------M 932

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            R+D S  LR +E G+VD VL++ NA G +F KV+VRSVR+PQIGDKF+SRHGQKGT+G+T
Sbjct: 933  RQDCSCCLRANENGVVDTVLVSVNAKGTKFAKVKVRSVRVPQIGDKFASRHGQKGTIGIT 992

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y  ED+P+T EGI PDII+NPHA+PSRMTIG L+EC++GKV A  G EGDATPF+ +TV 
Sbjct: 993  YRTEDLPFTCEGIVPDIIMNPHAVPSRMTIGHLVECLIGKVGACCGMEGDATPFSKLTVQ 1052

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             I++ L  CGY   G E  + G TG+ +T+ IF+GPTYYQRLKHMV+DKIH+R RGP  +
Sbjct: 1053 QIAERLFDCGYARHGNEAFHCGFTGQMITSRIFVGPTYYQRLKHMVEDKIHARSRGPSTM 1112

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            LTRQP EGRSR+GGLRFGEMERDCMI+HGA+  LKERLFDQSDAYR+HVC++CGL  IA+
Sbjct: 1113 LTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRIHVCDNCGLCCIAD 1172

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            L K+SFEC  C NKT+I QV IPYACKLL QELM+MAI P+++
Sbjct: 1173 LNKSSFECTACDNKTNISQVAIPYACKLLIQELMSMAIYPKLV 1215


>gi|326436004|gb|EGD81574.1| DNA-directed RNA polymerase II polypeptide [Salpingoeca sp. ATCC
            50818]
          Length = 1193

 Score = 1395 bits (3610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 682/1179 (57%), Positives = 867/1179 (73%), Gaps = 38/1179 (3%)

Query: 28   AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAET- 86
             W VI+AYF EKGLVRQQLDSFD FIQ  +Q+ V++S  +EI  + Q+     ++F E  
Sbjct: 22   CWDVINAYFNEKGLVRQQLDSFDHFIQYGIQDAVEKSPALEIEAKPQYT---TNEFEEPP 78

Query: 87   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 146
             Y + F ++ LSKP   E DG +  L+P  ARLRNLTY + ++V+  +   ++  D E  
Sbjct: 79   SYSVKFCEVSLSKPTHYEEDGTSHFLYPNDARLRNLTYWSEMFVEA-EETYRETQDSEPE 137

Query: 147  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206
            T T   T V +GK+PIMLRS +C L      DL  L ECP D GGYFIINGSEKVL+AQE
Sbjct: 138  TTT---TSVHLGKIPIMLRSKFCLLNGKLNDDLYNLNECPLDPGGYFIINGSEKVLLAQE 194

Query: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266
            KM+ N V+VF+K+ P KY +V E++S+ E   RPPS++ V++L R S     SG  +  T
Sbjct: 195  KMAPNTVFVFEKKDP-KYLFVTEIKSVLERSPRPPSSLLVKLL-RGSQSAARSGPVLHVT 252

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            LPY+R ++P+++VFRALGF  D+ ILEHI YDF D +MME+L+PSL+EAFVIQN+ VALD
Sbjct: 253  LPYVRQDVPVVVVFRALGFEDDRSILEHIIYDFNDMEMMEMLKPSLDEAFVIQNRDVALD 312

Query: 327  YIGKRGA-TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 385
            +IGKR   +  +++++RI YAK+ILQKE+LPH+G G  CETKKA++ GY++HR L  AL 
Sbjct: 313  WIGKRAVQSPAISKERRIHYAKDILQKELLPHIGLGPHCETKKAFFLGYMVHRTLQAALR 372

Query: 386  RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
            RR  DDRDHYGNKRLD++GPL G LFR LFR +T+++R+Y+QK ++  +++ L   + +K
Sbjct: 373  RRQLDDRDHYGNKRLDMSGPLTGFLFRTLFRNVTKELRSYIQKKLNRSEEIKLSAGLNSK 432

Query: 446  TITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
             I SGL+YS ATGNWG QA A   RAGVSQVLNRLT+ASTLSHLRRLNSPI R GK+AKP
Sbjct: 433  QIESGLRYSFATGNWGTQAKAFEARAGVSQVLNRLTFASTLSHLRRLNSPIERTGKIAKP 492

Query: 505  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI-S 563
            RQLHN+ WG +CPAETPEG A GLVKNLALM  +TVG  A P+LE L   G E+ +++ S
Sbjct: 493  RQLHNTHWGYICPAETPEGHAVGLVKNLALMASVTVGGDATPVLELLNSIGMESLDDLAS 552

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRR-RVD-VNTEVGVVRDIRLKELRIYT 621
             +VI   TKIFVNG WVGIH +PE +V+ L   RR + D + +EV + RDIR +E+ +Y+
Sbjct: 553  RSVIRDTTKIFVNGAWVGIHMEPEEVVRNLHLCRRTQADMIQSEVSIFRDIREREIHVYS 612

Query: 622  DYGRCSRPLFIVEK--------------QRLLIKKRDIIALQ----QRESPEDGGWHDLV 663
            D GR +RPL IVEK              Q L +KK+ +  LQ    Q        W DLV
Sbjct: 613  DSGRLTRPLLIVEKPELDDTFHDGTQQQQTLALKKQHLEKLQSAAMQNAFEATYSWSDLV 672

Query: 664  AKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPF 723
             +G +EYID  EE+TTMI+MT +D   +    ++ Y  TYTHCEIHPS+ILG+CASIIPF
Sbjct: 673  REGLVEYIDVNEEDTTMIAMTPDDFEMS--DEQDLYCTTYTHCEIHPSMILGICASIIPF 730

Query: 724  PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 783
            PDHNQSPRNTYQSAMGKQAMGIY TN+  R+DTLA+VLYYPQ+PLV TR+M++++F+ LP
Sbjct: 731  PDHNQSPRNTYQSAMGKQAMGIYTTNFHIRLDTLAHVLYYPQQPLVKTRSMDYMYFKDLP 790

Query: 784  AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 843
            AGINAIVAI CY+GYNQEDSVIMN+ ++DRG FRS+F+RSY   E+  G  V + F +P 
Sbjct: 791  AGINAIVAIMCYTGYNQEDSVIMNKCAVDRGLFRSVFYRSYASSEENTGREVIK-FEKPS 849

Query: 844  RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHS 901
            R    GMR+ +Y KL+DDGL  PGT V+G+D IIG+T   P + +    + +R+ + D S
Sbjct: 850  RETCAGMRNSNYGKLEDDGLIAPGTSVTGDDAIIGRTMELPPNAEARDSRLARFEKLDKS 909

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
            + LR SE G++DQV++     G RFVK+RVRS+R+PQIGDKF+SRHGQKGT GM Y+QED
Sbjct: 910  VFLRASENGIIDQVMVAMGPKGTRFVKIRVRSIRVPQIGDKFASRHGQKGTCGMQYSQED 969

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MP+T +GITPDIIVNPHAIPSRMTIG LIEC++GKV    G  GDATPF +VTV+ ++ A
Sbjct: 970  MPFTCQGITPDIIVNPHAIPSRMTIGHLIECLLGKVGCLEGAFGDATPFIEVTVNEVASA 1029

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
            L    +   G E +YNG TGR++ A +F GPTYYQRLKHMVDDKIH+R RGP+QILT+QP
Sbjct: 1030 LEAHNFHKYGNEVLYNGFTGRKMQAQVFFGPTYYQRLKHMVDDKIHARARGPLQILTKQP 1089

Query: 1082 AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNS 1141
             EGRSRDGGLRFGEMERDCMIAHG++ FL+ERLF+ SD YR+HVC+ CGLI IANL KN 
Sbjct: 1090 VEGRSRDGGLRFGEMERDCMIAHGSAQFLRERLFEVSDPYRIHVCDICGLICIANLNKNE 1149

Query: 1142 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             EC+ C N T + QV IPYACKLLFQELM+M IAPR++T
Sbjct: 1150 LECKACSNTTRVSQVRIPYACKLLFQELMSMCIAPRIMT 1188


>gi|387593606|gb|EIJ88630.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
            ERTm3]
 gi|387597261|gb|EIJ94881.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
            ERTm1]
          Length = 1137

 Score = 1394 bits (3607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 671/1159 (57%), Positives = 886/1159 (76%), Gaps = 34/1159 (2%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            +++QED W V+SA+F+EKGLVRQQLDSF+EFIQ+TMQE+VDE++ I +     H+P  + 
Sbjct: 3    KLSQEDCWKVVSAFFKEKGLVRQQLDSFNEFIQSTMQEVVDENSKIVLL---AHSPTGEE 59

Query: 82   DFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
            + A   Y I F QIY+SKP  +TE DG T+++FP  AR+R+LTYSA LY+D+    +K  
Sbjct: 60   EQARK-YTIEFKQIYVSKPPTITEPDGRTSSMFPNDARVRSLTYSASLYIDI----VKTE 114

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
            H G+E  E++ + K+ IG +PIMLRS YC      ++D+  + EC YDQGGYFI+NGSEK
Sbjct: 115  HIGDEEVESRSYKKMPIGSIPIMLRSLYCVYSNTDDRDMNRIEECTYDQGGYFIVNGSEK 174

Query: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
            VLIA E+M++N VY+FKK  P+ Y Y AE+RS+ +   R PS++ +R++SR S      G
Sbjct: 175  VLIAHERMASNLVYIFKKSPPSPYLYTAEMRSVPDHGLRLPSSLTIRLVSRASDSASGGG 234

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
              +RA LP+ + ++P++++FRALGFV+DK+ILEHICYDF DT+M+ +LRPS+EEAFVIQ+
Sbjct: 235  YLLRALLPHAKLDVPVVVIFRALGFVSDKEILEHICYDFSDTEMLSMLRPSIEEAFVIQD 294

Query: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            Q VALDYIGKR A  G +++KRIK+AK++ QKE LPHVGT +FCETKKAY FGY I++LL
Sbjct: 295  QGVALDYIGKRVAPAGFSKEKRIKFAKDLFQKEFLPHVGTKEFCETKKAYLFGYTINKLL 354

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
            + ALGRR+E+DRDHYG KRLDLAGPL+ GLFRMLF+K++ ++  Y+Q+C+D  KD+NL  
Sbjct: 355  MVALGRRSEEDRDHYGRKRLDLAGPLMTGLFRMLFKKMSNELAKYMQRCIDGNKDLNLIV 414

Query: 441  AIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 499
             ++  T+T+GL+YSLATGNWG Q+ +   RAGV+QVLNR  Y STLSHLRR+N+PIGR+G
Sbjct: 415  GLRTSTLTNGLRYSLATGNWGEQSKSMQARAGVAQVLNRYNYISTLSHLRRVNTPIGRDG 474

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            KLAKPRQLH+S WGM+CPAETPEGQACGLVKN ALM +++VG+++  ++E LEE G E  
Sbjct: 475  KLAKPRQLHSSHWGMVCPAETPEGQACGLVKNFALMSHVSVGTSSSVVVELLEECGLEGL 534

Query: 560  EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 619
            EE+SP+ I  ATK+ VNG WVG+HR P+ L+ TL+ LRR  ++++E+ +VRD+R KE+RI
Sbjct: 535  EEVSPSAIVGATKVLVNGSWVGVHRSPDDLMGTLKYLRRSGELSSEIAIVRDLREKEIRI 594

Query: 620  YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 679
             TD GR  RPLFIV+K  L I +R + A + R+      W +L+A G +E++D EEEET 
Sbjct: 595  NTDGGRACRPLFIVDKGVLRI-ERFLEANRHRKFT----WDELMADGCVEFLDVEEEETA 649

Query: 680  MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
            MI++   DL    +         YTHCEI P+ +LGVCAS++PFPDHNQSPRNTYQSAMG
Sbjct: 650  MIAVKPGDLKNTDV--------MYTHCEIQPATMLGVCASVVPFPDHNQSPRNTYQSAMG 701

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMG+Y TN+  RMD+L+ VL YPQKPLV T++M  L FR+LP+G NA+VAIACYSGYN
Sbjct: 702  KQAMGMYATNFLMRMDSLSNVLCYPQKPLVITQSMNFLRFRELPSGQNAMVAIACYSGYN 761

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDSV+MN+ ++DRG FRS F+R+Y D E +     +E F +PDR +   M++ +Y+KLD
Sbjct: 762  QEDSVVMNRGAVDRGLFRSFFYRTYSDMESRTKPEEQECFMKPDRRSVQRMKNANYEKLD 821

Query: 860  DDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTT 919
             DGL PPGTRVSGEDV+IGKT  +S  +          +D S ++R +E+G+VD+V+LTT
Sbjct: 822  MDGLVPPGTRVSGEDVLIGKT--VSTPDGY--------KDASTTMRGTESGVVDRVILTT 871

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
              DG R+ ++RVRS R PQ+GDKF+SRHGQKGT+G+  + EDMP+T +GITPDII+NPHA
Sbjct: 872  K-DGYRYARIRVRSARTPQMGDKFASRHGQKGTIGIMLSPEDMPFTADGITPDIIINPHA 930

Query: 980  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
            IPSRMTIG L+EC++GKV+   GKEGDATPFT ++V+ IS+ L K GYQ RGFE MY+G 
Sbjct: 931  IPSRMTIGHLVECLLGKVSCMSGKEGDATPFTGLSVEEISEELQKHGYQKRGFEVMYSGF 990

Query: 1040 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1099
            TGR++ + IF+GPTYYQRLKHMV DKIH+R  GPVQILTRQP EGRSRDGGLRFGEMERD
Sbjct: 991  TGRKMRSQIFIGPTYYQRLKHMVADKIHARAHGPVQILTRQPVEGRSRDGGLRFGEMERD 1050

Query: 1100 CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 1159
            CMI+HGA+ FLKERL D SD + V +C  CG+    N ++  + C+ C  +T +  V++P
Sbjct: 1051 CMISHGAATFLKERLCDVSDKFEVFICNDCGVFCAGNKERGLYLCQLCGTRTSVSMVYMP 1110

Query: 1160 YACKLLFQELMAMAIAPRM 1178
            YA KLL QE+MAM I+ +M
Sbjct: 1111 YAFKLLVQEMMAMCISVQM 1129


>gi|443919777|gb|ELU39849.1| DNA-directed RNA polymerase II [Rhizoctonia solani AG-1 IA]
          Length = 1179

 Score = 1393 bits (3605), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 697/1154 (60%), Positives = 855/1154 (74%), Gaps = 79/1154 (6%)

Query: 3    EDDYDYEEQHQQEEE-DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            +D  DY +Q Q + + D+ +EITQED W +I+++F+EKGLVRQQLDSFDEF+QNTMQE+V
Sbjct: 50   QDYEDYRDQDQADYDVDDYDEITQEDCWTIITSFFDEKGLVRQQLDSFDEFVQNTMQELV 109

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            DESAD+ +    QH  G ++D A   Y+I FGQIYLS+P +TE+DG    +FP+ A    
Sbjct: 110  DESADLILDQSDQHT-GAEND-ATKRYEIRFGQIYLSRPTITEADGSVVPVFPQEA---- 163

Query: 122  LTYSAPLYVDVTKRVIKKGHD----------GEEVTETQDFTKVFIGKV----PIMLRSS 167
                 PLYVD+TKRV+    D          G  + E  D  KV+IGKV    P+ L S 
Sbjct: 164  ----PPLYVDMTKRVLHGFEDENGETQFRPEGNGLEERAD--KVWIGKVGRNIPLCLES- 216

Query: 168  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
                     KDL +L ECP DQGGYFIINGSEKVLIAQE+M+ NHVYVF K QP+  +++
Sbjct: 217  ---------KDLYDLNECPLDQGGYFIINGSEKVLIAQERMAGNHVYVFAKAQPSPISFL 267

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            +E+RS  E   +  STM V+M  R   K  + G  IRA+LPYI+ +IPI +VFRALG  +
Sbjct: 268  SEIRSAVEKGGKTISTMQVKMFHRNQDK--TLGNVIRASLPYIKNDIPIWVVFRALGVTS 325

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ----QVALDYIGKRGATVGVTRDKRI 343
            D+DILEHICYD  DT M+E+L+P ++E FVIQ +    Q ALD+IG RG T G+ ++KR+
Sbjct: 326  DRDILEHICYDRDDTSMLEMLKPCIDEGFVIQERIVSGQNALDFIGSRGTTTGLNKEKRL 385

Query: 344  KYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLA 403
            +YA+EILQKEMLPH+   +  ETKKA++FGY+IHRLLL AL RR  DDRDH+G KRLDLA
Sbjct: 386  RYAQEILQKEMLPHISMAEGSETKKAFFFGYMIHRLLLAALDRRELDDRDHFGKKRLDLA 445

Query: 404  GPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-Q 462
            GPLL  LFRMLFRKLT+D       CV++ ++  L+ A+KA TIT+GLKYSLATGNWG Q
Sbjct: 446  GPLLASLFRMLFRKLTKD-------CVESNREFQLRLAVKANTITNGLKYSLATGNWGDQ 498

Query: 463  ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE 522
              +   +AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPE
Sbjct: 499  KKSMSAKAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPE 558

Query: 523  GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE-ISPAVIPQATKIFVNGCWVG 581
            GQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE ++      ATK+FVNG W+G
Sbjct: 559  GQACGLVKNLSLMSCISVGSLSGPVIEFLEEWGLESLEENVATGNSASATKVFVNGVWLG 618

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EKQRLLI 640
            IHRD   LVKTL RLRR   +N+EV +VRDIR KELRIYTD GR  RPLFIV E+Q+L +
Sbjct: 619  IHRDAPNLVKTLHRLRRMDHINSEVSIVRDIREKELRIYTDAGRICRPLFIVDEQQKLTL 678

Query: 641  KKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            KK+ +  LQ    E  ++  W  LV +G IE +D +EEET MISMT  DL  +R      
Sbjct: 679  KKKHVEWLQNGVDEEGQEFKWKQLVKRGVIELLDADEEETVMISMTPEDLENSRRIEGGG 738

Query: 699  YAD----------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
            Y                        T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQS
Sbjct: 739  YVSNVNDPDWDPSGTARVKSVPNIHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 798

Query: 737  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
            AMGKQAMGIY+TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYS
Sbjct: 799  AMGKQAMGIYLTNYQIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYS 858

Query: 797  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 856
            GYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G L  E+F +P R  T+ M+HG+YD
Sbjct: 859  GYNQEDSVIMNQSSIDRGLFRSMYYRSYMDIEKKAGVLNLEEFEKPTRDTTLRMKHGTYD 918

Query: 857  KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQ 914
            KL+ DG   PGT V+GED+IIGKT P+  D E  GQ +R +T+RD S  L+ +E G+VDQ
Sbjct: 919  KLEADGFIAPGTGVTGEDIIIGKTAPLQADSEELGQRTRSHTKRDVSTPLKSTENGIVDQ 978

Query: 915  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 974
            VL+TTN +G +FVKVRVRS R+PQ GDKF+SRHGQKGT+G+TY QEDMP+T EGITPD+I
Sbjct: 979  VLITTNHEGHKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLI 1038

Query: 975  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 1034
            +NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TVD++S+ L + GYQ RG E 
Sbjct: 1039 INPHAIPSRMTIGHLVECLLSKVATLLGNEGDATPFTELTVDSVSQLLQQKGYQSRGLEV 1098

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            MY+GHTG++L A ++ GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRFG
Sbjct: 1099 MYHGHTGKKLQAQVYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFG 1158

Query: 1095 EMERDCMIAHGASH 1108
            EME    +A    H
Sbjct: 1159 EMEVRLRLAQHYFH 1172


>gi|189197211|ref|XP_001934943.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187980891|gb|EDU47517.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1208

 Score = 1389 bits (3594), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/1201 (56%), Positives = 873/1201 (72%), Gaps = 77/1201 (6%)

Query: 8    YEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 67
            Y+++   E EDEE+ +  ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV E+  +
Sbjct: 7    YDDEGMDEYEDEEDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSV 66

Query: 68   EIRPESQHNPGQQSD-FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
             +     +NP ++ +   +  Y++ FG++YL++P  TE DG T  L+P  ARLRNLTYS 
Sbjct: 67   ILEQNQPYNPDEEDNPIIKRRYEMKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSG 126

Query: 127  PLYVDVTKRVI-------KKGHDGEEVT------------ETQDFT-------KVFIGKV 160
             +  D+  RV+           D EE+             E ++ +       +VFIGK+
Sbjct: 127  AMLADIENRVMVAREGRDPDADDDEEMEGGYTGGQNQIRWERENMSSDDGAAARVFIGKL 186

Query: 161  PIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 220
            P+MLRS  C L   S+ DL  L ECPYDQGGYF+INGSEKVLIAQE+ + N V VF+K+Q
Sbjct: 187  PVMLRSELCHLRAQSDADLFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQ 246

Query: 221  PNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS--SGQYIRATLPYIRTEIPIII 278
                 ++AE+RS  E   R  S+  ++    + A  G    G +  ATLPYI+ ++P+ I
Sbjct: 247  -GPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAI 305

Query: 279  VFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVT 338
            VFRALG V+D++IL HI +D  DTQ +ELL+PS+EE  V+Q+++ ALD+I KRGA  G T
Sbjct: 306  VFRALGIVSDEEILSHIVFDRNDTQTLELLKPSIEEGSVVQDRETALDFIAKRGANSG-T 364

Query: 339  RDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 398
            RD+R+K+A++I+Q+E LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDDRDH+G K
Sbjct: 365  RDRRLKFARDIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKK 424

Query: 399  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 458
            RLDLAGPL+  LFR+LF KLT+DV  Y+Q+CV+N +D N+Q A+KA TIT+GLKYSLATG
Sbjct: 425  RLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQDFNVQMAVKASTITNGLKYSLATG 484

Query: 459  NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 517
            NWG Q  AA  +AGVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS WG++CP
Sbjct: 485  NWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCP 544

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEGQACGLVKNL+LM Y++VGS A PI++F+ +   +  EE      P ATK+FVNG
Sbjct: 545  AETPEGQACGLVKNLSLMCYVSVGSDATPIVDFMTQRNMQLLEEYDQNQSPDATKVFVNG 604

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-- 635
             WVG+H + + LV  ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPLF+VE   
Sbjct: 605  VWVGVHSNAQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDV 664

Query: 636  ----QRLLIKKRDI---IALQQRESPEDGGWHD------------LVAKGFIEYIDTEEE 676
                +  LI  ++I   +  +Q E+ +  GW +            L+  G +EY+D EEE
Sbjct: 665  RKPNRNHLIFTKEISNKLKSEQMEANQRQGWSEEEVEQATYGWRGLIQDGVVEYLDAEEE 724

Query: 677  ETTMISMTINDLVQ---------------------ARLHP-EEAYADTYTHCEIHPSLIL 714
            ET MI+ +  DL +                      RL P  +    +YTHCEIHP++IL
Sbjct: 725  ETAMITFSPEDLEEWREMKMGLPMTDHSLEGSQRLRRLKPLPDPRIHSYTHCEIHPAMIL 784

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            G+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TN+  RM+T+  VLYYPQKPL TTR+M
Sbjct: 785  GICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSM 844

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E+L FR+LPAG NAIVAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  
Sbjct: 845  EYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVN 904

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQAS 893
            V E F +P R++T+ ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D A+ GQ +
Sbjct: 905  VLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIATDAAELGQKT 964

Query: 894  R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
              +T+RD S  LR +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+SRHGQKGT
Sbjct: 965  TLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGT 1024

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            +G+TY QEDMP++ EG+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EGDATPFTD
Sbjct: 1025 IGITYRQEDMPFSREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTD 1084

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 1072
            VTVD +S+ L   GYQ RGFE MYNGHTG+++   IFLGPTYYQRL+HMVDDKIH+R RG
Sbjct: 1085 VTVDQVSQLLENAGYQKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHARARG 1144

Query: 1073 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 1132
            P+QILTRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHVC+ CGL+
Sbjct: 1145 PLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLM 1204

Query: 1133 A 1133
            +
Sbjct: 1205 S 1205


>gi|344288485|ref|XP_003415980.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Loxodonta africana]
          Length = 1010

 Score = 1387 bits (3590), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/932 (70%), Positives = 772/932 (82%), Gaps = 10/932 (1%)

Query: 254  AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLE 313
            AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D +MME+++PSL+
Sbjct: 83   AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 142

Query: 314  EAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 373
            EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  DFCETKKAY+ G
Sbjct: 143  EAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLG 202

Query: 374  YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG 433
            Y++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK +D G
Sbjct: 203  YMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRG 262

Query: 434  KDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
            KD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRRLN
Sbjct: 263  KDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLN 322

Query: 493  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
            SPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLE
Sbjct: 323  SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLE 382

Query: 553  EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRD 611
            EW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D + +EV ++RD
Sbjct: 383  EWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRD 442

Query: 612  IRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYI 671
            IR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G +EYI
Sbjct: 443  IREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYI 501

Query: 672  DTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
            DT EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDHNQSPR
Sbjct: 502  DTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 557

Query: 732  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
            NTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVA
Sbjct: 558  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 617

Query: 792  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 851
            IA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R    GMR
Sbjct: 618  IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMR 677

Query: 852  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSET 909
            H  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+RD S  LR SET
Sbjct: 678  HAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSET 737

Query: 910  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
            G+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGI
Sbjct: 738  GIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGI 797

Query: 970  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQ 1028
            TPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L + GY 
Sbjct: 798  TPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSEYGYH 857

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
            +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRD
Sbjct: 858  LRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRD 917

Query: 1089 GGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK 1148
            GGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++ECRGC+
Sbjct: 918  GGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCR 977

Query: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            NKT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 978  NKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1009



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 58/76 (76%), Gaps = 2/76 (2%)

Query: 6  YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
          YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2  YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64 SADIEIRPESQHNPGQ 79
          +  I+++ E+QH  G+
Sbjct: 62 APPIDLQAEAQHASGE 77


>gi|451994472|gb|EMD86942.1| hypothetical protein COCHEDRAFT_72858 [Cochliobolus heterostrophus
            C5]
          Length = 1208

 Score = 1386 bits (3588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 678/1208 (56%), Positives = 871/1208 (72%), Gaps = 79/1208 (6%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            M + Y+YE+     E++E++ +  ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV
Sbjct: 1    MAEPYEYEDGMDDYEDEEDDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIV 60

Query: 62   DESADIEIRPESQHNPGQQSD-FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
             E+  + +   + +NP +  +   +  Y+I FG++YL++P  TE DG T  L+P  ARLR
Sbjct: 61   KENGSVILEQNTPYNPDEDDNPIIKRRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLR 120

Query: 121  NLTYSAPLYVDVTKRVI--KKGHDGEEVTETQDF-------------------------T 153
            NLTYS  +  D+  R++  ++G D  E  E +D                           
Sbjct: 121  NLTYSGAMLADIENRIMVAREGRD-PEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAA 179

Query: 154  KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 213
            +VFIGK+P+MLRS  C L   S+ DL  L ECPYDQGGYF+INGSEKVLIAQE+ + N V
Sbjct: 180  RVFIGKLPVMLRSELCHLRAQSDADLFALNECPYDQGGYFVINGSEKVLIAQERSAANIV 239

Query: 214  YVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS--SGQYIRATLPYIR 271
             VF+K+Q     ++AE+RS  E   R  S+  ++    + A  G    G +  ATLPYI+
Sbjct: 240  QVFRKKQ-GPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGPGKRIPGPFAYATLPYIK 298

Query: 272  TEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKR 331
             ++P+ IVFRALG V+D++IL HI YD  DTQM+ELL+PS+EE  V+Q+++ ALD+I KR
Sbjct: 299  ADVPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEGSVVQDRETALDFIAKR 358

Query: 332  GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDD 391
            GA  G T+D+R+K+A++I+Q+E LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDD
Sbjct: 359  GANSG-TKDRRLKFARDIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDD 417

Query: 392  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGL 451
            RDH+G KRLDLAGPL+  LFR+LF KLT+DV  Y+Q+CV+N +D N+Q A+KA  IT+GL
Sbjct: 418  RDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQDFNVQMAVKASIITNGL 477

Query: 452  KYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS 510
            KYSLATGNWG Q  AA  +AGVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS
Sbjct: 478  KYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNS 537

Query: 511  QWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA 570
             WG++CPAETPEGQACGLVKNL+LM Y++VGS A PI++F+ +   +  EE      P A
Sbjct: 538  HWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDA 597

Query: 571  TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 630
            TK+FVNG WVG+H + + LV  ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPL
Sbjct: 598  TKVFVNGVWVGVHSNAQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPL 657

Query: 631  FIVE-------KQRLLIKK---RDIIALQQRESPEDG-----------GWHDLVAKGFIE 669
            F+VE       +  L+  K     + A QQ  S   G           GW  L+  G +E
Sbjct: 658  FVVENDIRKPNRNHLIFTKEISNKLKAEQQETSTRQGWSQEEVEQATYGWRGLIQDGVVE 717

Query: 670  YIDTEEEETTMISMTINDLVQ---------------------ARLHPE-EAYADTYTHCE 707
            Y+D EEEET MI+ +  DL +                      RL P+ +     YTHCE
Sbjct: 718  YLDAEEEETAMITFSPEDLEEWREMKMGLPAAERSTEGKDRLRRLKPQPDPRIHAYTHCE 777

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TN+  RM+T+  VLYYPQKP
Sbjct: 778  IHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKP 837

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME+L FR+LPAG NAIVAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++
Sbjct: 838  LATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQ 897

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 886
            EK++G  V E F +P R++T+ ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D 
Sbjct: 898  EKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADA 957

Query: 887  -EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
             E   + + +T+RD S  LR +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+S
Sbjct: 958  QELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFAS 1017

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EG+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EG
Sbjct: 1018 RHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEG 1077

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFTDVTVD IS+ L   GYQ RGFE MYNGHTG++L   IFLGPTYYQRL+HMVDDK
Sbjct: 1078 DATPFTDVTVDQISQLLEDAGYQKRGFEIMYNGHTGKKLRTQIFLGPTYYQRLRHMVDDK 1137

Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHV 1125
            IH+R RGP+QILTRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHV
Sbjct: 1138 IHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHV 1197

Query: 1126 CEHCGLIA 1133
            C+ CGL++
Sbjct: 1198 CDICGLMS 1205


>gi|156084492|ref|XP_001609729.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
            bovis]
 gi|154796981|gb|EDO06161.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
            bovis]
          Length = 1207

 Score = 1384 bits (3583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/1173 (56%), Positives = 864/1173 (73%), Gaps = 29/1173 (2%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            ++E +  T ED+W VI ++F   GLV QQ++SF++F+   MQE +D+   IEI P+ Q++
Sbjct: 50   KNELDAFTDEDSWKVIGSFFNTHGLVHQQIESFNDFVTYRMQETIDQHPPIEITPQPQYH 109

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
            P  + +    +YK+ FGQ+ L+KP + E  G    ++P+ ARLRNLTYS+ +YVD+ ++ 
Sbjct: 110  PEDERE-NNIVYKLKFGQLSLNKPCVEEMAGVLKHIWPQEARLRNLTYSSQIYVDIEQKT 168

Query: 137  IKKGHDG--EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI 194
              +  +   E + ET  + ++ +G++P+ML+S+YC     SE DL ++GECP+D+GGYFI
Sbjct: 169  YLRDENTNTETLQETITYPRIELGRIPMMLKSAYCWTKDISEDDLADVGECPFDEGGYFI 228

Query: 195  INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE-SQNRPPSTMFVRMLSRTS 253
            +NG E+VLI QE+M+ N++Y+FKK+QP+KY+ VAE+RS  E SQ   P   F  M+  TS
Sbjct: 229  VNGGERVLIGQERMANNYIYIFKKKQPSKYSLVAEIRSQPEFSQGTTP---FSIMMKSTS 285

Query: 254  AKGG----SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 309
               G    S GQ +  ++PY++++IPI I+FRALG VAD+DIL+ I YDF+D QM+ L+R
Sbjct: 286  GIAGNRFKSHGQLV-GSIPYLKSDIPIAILFRALGCVADRDILQRIVYDFEDKQMLTLMR 344

Query: 310  PSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKA 369
            PSLEE      Q++ LD+IGKRG TVG   + R++YAK++L++  LPHVGT   CE++K 
Sbjct: 345  PSLEETADYSTQEMCLDFIGKRGPTVGAPLETRVQYAKDLLRQHFLPHVGTEPGCESRKC 404

Query: 370  YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC 429
            Y+ GY++HRLLL  LGR  EDDRDH+G KRLDLAG L+   F  LFRK+ +D +  +Q+ 
Sbjct: 405  YFLGYMVHRLLLSRLGRIPEDDRDHFGKKRLDLAGSLMASSFGTLFRKMVKDTKRILQQQ 464

Query: 430  VDNGKDVNLQFAIKAKT-ITSGLKYSLATGNWGQ-ANAAGTRAGVSQVLNRLTYASTLSH 487
            +D+G++ ++  A+++ T IT GL+Y L TGNWG+  +    R GVSQVLNRLT+AS LSH
Sbjct: 465  IDSGREFDVAGAVRSATQITHGLQYQLLTGNWGRDRDGKVVRTGVSQVLNRLTFASYLSH 524

Query: 488  LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
            LRRLN+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM +I+VG+AA  I
Sbjct: 525  LRRLNTPLGREGKIAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCFISVGTAASTI 584

Query: 548  LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 607
             EFL EWG ++ +E+ P VI    KIF+NG WVG   + E LVKTL  LRRR ++  E  
Sbjct: 585  NEFLCEWGMDSLDEVPPEVIKDRIKIFINGTWVGCFDEAESLVKTLLELRRRGNIAAETS 644

Query: 608  VVRDIRLKELRIYTDYGRCSRPLFIVEK-QRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
            +V DI  +E++I+TD GR  RPL IVE    L I K DI  L   E      W  L+  G
Sbjct: 645  IVCDIVSQEVKIFTDAGRAMRPLLIVENGNTLAITKTDIARLDNNEC----NWDGLIESG 700

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +EY+D EEEE  MI+M   DL          Y +TYTHCEIHPS+ILGVCASIIPFPD 
Sbjct: 701  VVEYVDCEEEEMCMIAMFAEDLKN-----NSTYCNTYTHCEIHPSMILGVCASIIPFPDQ 755

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG+Y TN+  RMD L+++LYYPQKPLV TR+ME L FR+LPAGI
Sbjct: 756  NQSPRNTYQSAMGKQAMGVYATNFNLRMDPLSHLLYYPQKPLVCTRSMEFLRFRELPAGI 815

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NAIVAI CY+GYNQEDS+IMNQSSIDRG FRS F R+Y  EEK +G+ V E F RP+ + 
Sbjct: 816  NAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSAFNRTYVSEEKHVGSTVVERFERPNPAT 875

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRH 906
             +G++ G Y KLD DGL  PG+RV G+DVIIG+T+  + +E +       R+D S  LR 
Sbjct: 876  CVGLKRGDYTKLDADGLVQPGSRVLGDDVIIGRTSACNDEEDEN-----LRQDCSCCLRT 930

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            SE G+VD VL+++NA G RF KV+VRS+R+PQIGDKF+SRHGQKGT+GMTY  ED+P+T 
Sbjct: 931  SENGVVDTVLISSNAKGSRFAKVKVRSIRVPQIGDKFASRHGQKGTIGMTYRTEDLPFTC 990

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGI PDII+NPHA+PSRMTIG L+EC++GKV A  G EGDATPF+ +TV ++++ L +CG
Sbjct: 991  EGIVPDIIMNPHAVPSRMTIGHLVECLVGKVGACCGMEGDATPFSKLTVQHVAERLFECG 1050

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            Y   G E ++ G TG  + + IF+GPTYYQRLKHMV+DKIH+R RGPV +LTRQP EGRS
Sbjct: 1051 YGKHGNEALHCGFTGEMIVSKIFIGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRS 1110

Query: 1087 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1146
            RDGGLRFGEMERDCMI+HGA+  LKERLFDQSDA+R+HVC+ CGL  +A+L +N+FEC  
Sbjct: 1111 RDGGLRFGEMERDCMISHGAAKMLKERLFDQSDAFRIHVCDRCGLCCVADLNRNNFECTA 1170

Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            C NKT+I QV IPYACKLL QELMAMAI P++L
Sbjct: 1171 CDNKTNISQVTIPYACKLLIQELMAMAIYPKLL 1203


>gi|406694356|gb|EKC97684.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii var.
            asahii CBS 8904]
          Length = 1757

 Score = 1379 bits (3570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1152 (59%), Positives = 852/1152 (73%), Gaps = 58/1152 (5%)

Query: 5    DYDY-EEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            DY Y EEQ+ +    EEE I+QED W VI+++F+EKGLVRQQL+SF+EF++NTMQE+VDE
Sbjct: 12   DYQYDEEQNGENGVGEEEPISQEDYWKVINSFFDEKGLVRQQLESFNEFVENTMQELVDE 71

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  + +   +QH  G   D     Y+I+FGQIYL+K  MTE DG+T  LFP+ ARLRNLT
Sbjct: 72   NQRLTLDQHTQHT-GVMGDETRR-YEITFGQIYLAKVAMTEMDGQTVGLFPQEARLRNLT 129

Query: 124  YSAPLYVDVTKRVIKKGH-------------DGEEVTETQDFTKVFIGKVPIMLRSSYCT 170
            Y+APLYVD+ K  +  G              D   V +  +  K++IGKVP+M+RS++C 
Sbjct: 130  YAAPLYVDMKKSTLSAGDVDDPIEADWKPAVDANGVMQGAEEDKIWIGKVPVMVRSNFCL 189

Query: 171  LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 230
            L+   +     L ECPYDQGGYFIINGSEKVLIAQE+M+ N VYVFKK  P+   Y++EV
Sbjct: 190  LHGLPDDHFYALNECPYDQGGYFIINGSEKVLIAQERMAANTVYVFKKADPSPVTYLSEV 249

Query: 231  RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
             S  E   + PS   V+M  R   K  ++G  IR  LPY +T+IPI+IVFRALG V D+D
Sbjct: 250  TSQMEKGGKTPSKTVVKMYLRAQDKA-TTGSVIRVQLPYTKTDIPIVIVFRALGIVPDRD 308

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            +L HIC++  DT M+E+LRP +EEAF IQ++  ALD+IG+RG     TR  R + A +IL
Sbjct: 309  VLSHICFNPNDTAMLEMLRPCIEEAFSIQDRDTALDFIGRRGQQEKGTRAVRQRAAFDIL 368

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            QKE LPHV   +  E++KA++ GY+IHRL   ALGRR  DDRDH+G KRLDLAGPLL  L
Sbjct: 369  QKEFLPHVSVSEGFESRKAFFLGYMIHRLCSAALGRRELDDRDHFGKKRLDLAGPLLANL 428

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FR+LF+KLTRDV  ++QKCV+  K+  L  AIK   IT+GLKYSLATGNWG QA A   R
Sbjct: 429  FRILFKKLTRDVYRHLQKCVETHKEFTLVNAIKPGIITNGLKYSLATGNWGDQAKAMQAR 488

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLV
Sbjct: 489  AGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLICPAETPEGQACGLV 548

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNLALM YI+VGS + P++EFLEEWG E  +E   A  P ATK+FVNG W+GIHRD   L
Sbjct: 549  KNLALMSYISVGSYSAPVMEFLEEWGLEPQDEYGSA--PNATKVFVNGVWMGIHRDAVKL 606

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIA 647
             + L  +RR   +  EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L +K+  I  
Sbjct: 607  HENLLEMRRGGQLKHEVSIVRDIRERELRLYTDAGRVCRPLFIVDRPTQTLRLKREHIDR 666

Query: 648  LQQ-----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH--PEE--- 697
            L+       E+ +   W +L+ +G IEY+D EEEET +I+MT  DL  AR++  P+E   
Sbjct: 667  LENIADGLEEAVDGSAWDELLYQGVIEYVDAEEEETILIAMTSEDLENARMYESPQEVAR 726

Query: 698  -------------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 738
                               +++  YTH EIHPS+ILGVCASI+PFPDHNQSPRNTYQSAM
Sbjct: 727  AQAAHTLEAFDPTARVKSSSWSQNYTHMEIHPSMILGVCASIVPFPDHNQSPRNTYQSAM 786

Query: 739  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 798
            GKQAMGI++TNYQ RMDT+A +LYYPQ PL TT++M++L F  LPAG NAIVAI CYSGY
Sbjct: 787  GKQAMGIHLTNYQLRMDTMANILYYPQSPLATTQSMKYLKFSDLPAGQNAIVAILCYSGY 846

Query: 799  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---Y 855
            NQEDSVIMNQSSIDRG FRSL++R+Y D EK +G    E F +PDR+ T+ M+HGS   Y
Sbjct: 847  NQEDSVIMNQSSIDRGLFRSLYYRAYTDTEKMVGMQKVESFEKPDRNETLRMKHGSSDRY 906

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVD 913
             KLD+DGL  P T V+G+D+IIGKT PI  D E  GQ ++ +T+RD S  ++ +E G+VD
Sbjct: 907  AKLDNDGLITPATNVNGDDIIIGKTAPIPPDSEELGQRSATHTKRDVSTPMKSTEQGVVD 966

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QV++TTNADGL+FVK+R+RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI
Sbjct: 967  QVMITTNADGLKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDI 1026

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            I+NPHAIPSRMTIG L+EC++ K+A   G+EGDATPFT++TV+++SK L + GYQ RG E
Sbjct: 1027 IINPHAIPSRMTIGHLVECLLSKLATLTGREGDATPFTELTVESVSKLLRQRGYQSRGLE 1086

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
             MY+GHTG++L A ++ GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRF
Sbjct: 1087 VMYHGHTGKKLRAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRF 1146

Query: 1094 GEMERDCMIAHG 1105
            GEMERDC+  HG
Sbjct: 1147 GEMERDCL--HG 1156



 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 66/85 (77%)

Query: 1099 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 1158
            +CMI+HG + FLKER+++ SDA+R+HVC+ CGL+A+ANLKK  F C  C+N T I Q++I
Sbjct: 1671 NCMISHGIAGFLKERMYESSDAFRLHVCDQCGLMAVANLKKQEFHCSVCRNSTQISQIYI 1730

Query: 1159 PYACKLLFQELMAMAIAPRMLTKED 1183
            PYA KLLFQEL AM +  RM + ED
Sbjct: 1731 PYAAKLLFQELQAMNVTVRMYSDED 1755


>gi|44889502|gb|AAS48373.1| RNA polymerase II [Cochliobolus heterostrophus]
          Length = 1208

 Score = 1377 bits (3564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 678/1208 (56%), Positives = 870/1208 (72%), Gaps = 79/1208 (6%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            M + Y+YE+     E++E++ +  ED WAVIS++F+ KGLV QQLDS+DEF +NT+Q+IV
Sbjct: 1    MAEPYEYEDGMDDYEDEEDDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIV 60

Query: 62   DESADIEIRPESQHNPGQQSD-FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
             E+  + +   + +NP +  +   +  Y+I FG++YL++P  TE DG T  L+P  ARLR
Sbjct: 61   KENGSVILEQNTPYNPDEDDNPIIKRRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLR 120

Query: 121  NLTYSAPLYVDVTKRVI--KKGHDGEEVTETQDF-------------------------T 153
            NLTYS  +  D+  R++  ++G D  E  E +D                           
Sbjct: 121  NLTYSGAMLADIENRIMVAREGRD-PEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAA 179

Query: 154  KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHV 213
            +VFIGK+P+MLRS  C L   S+ DL  L ECPYDQGGYF+INGSEKVLIAQE+ + N V
Sbjct: 180  RVFIGKLPVMLRSELCHLRAQSDADLFALNECPYDQGGYFVINGSEKVLIAQERSAANIV 239

Query: 214  YVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS--SGQYIRATLPYIR 271
             VF+K+Q     ++AE+RS  E   R  S+  ++    + A  G    G +  ATLPYI+
Sbjct: 240  QVFRKKQ-GPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGPGKRIPGPFAYATLPYIK 298

Query: 272  TEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKR 331
             ++P+ IVFRALG V+D++IL HI YD  DTQM+ELL+PS+EE  V+Q+++ ALD+I KR
Sbjct: 299  ADVPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEGSVVQDRETALDFIAKR 358

Query: 332  GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDD 391
            GA  G T+D+R+K+A++I+Q+E LPH+   +  +T+KAY+FGY+IHRLL C LGRR EDD
Sbjct: 359  GANSG-TKDRRLKFARDIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDD 417

Query: 392  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGL 451
            RDH+G KRLDLAGPL+  LFR+LF KLT+DV  Y+Q+CV+N +D N+Q A+KA  IT+GL
Sbjct: 418  RDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQDFNVQMAVKASIITNGL 477

Query: 452  KYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS 510
            KYSLATGNWG Q  AA   AGVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPRQLHNS
Sbjct: 478  KYSLATGNWGDQKXAASAXAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNS 537

Query: 511  QWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA 570
             WG++CPAETPEGQACGLVKNL+LM Y++VGS A PI++F+ +   +  EE      P A
Sbjct: 538  HWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDA 597

Query: 571  TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 630
            TK+FVNG WVG+H + + LV  ++ LRR   ++ E+ ++RDIR +E +I+TD GR  RPL
Sbjct: 598  TKVFVNGVWVGVHSNAQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPL 657

Query: 631  FIVE-------KQRLLIKK---RDIIALQQRESPEDG-----------GWHDLVAKGFIE 669
            F+VE       +  L+  K     + A QQ  S   G           GW  L+  G +E
Sbjct: 658  FVVENDIRKPNRNHLIFTKEISNKLKAEQQETSTRQGWSQEEVEQATYGWRGLIQDGVVE 717

Query: 670  YIDTEEEETTMISMTINDLVQ---------------------ARLHPE-EAYADTYTHCE 707
            Y+D EEEET MI+ +  DL +                      RL P+ +     YTHCE
Sbjct: 718  YLDAEEEETAMITFSPEDLEEWREMKMGLPAAERSTEGKDRLRRLKPQPDPRIHAYTHCE 777

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TN+  RM+T+  VLYYPQKP
Sbjct: 778  IHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKP 837

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME+L FR+LPAG NAIVAIA Y GYNQEDSVIMNQSSIDRG FRSLF+R+Y ++
Sbjct: 838  LATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQ 897

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 886
            EK++G  V E F +P R++T+ ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D 
Sbjct: 898  EKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADA 957

Query: 887  -EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
             E   + + +T+RD S  LR +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+S
Sbjct: 958  QELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFAS 1017

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EG+TPD+I+NPHAIPSRMTI  L+EC++ KV A  G+EG
Sbjct: 1018 RHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEG 1077

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFTDVTVD IS+ L   GYQ RGFE MYNGHTG++L   IFLGPTYYQRL+HMVDDK
Sbjct: 1078 DATPFTDVTVDQISQLLEDAGYQKRGFEIMYNGHTGKKLRTQIFLGPTYYQRLRHMVDDK 1137

Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHV 1125
            IH+R RGP+QILTRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF  SDAY VHV
Sbjct: 1138 IHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHV 1197

Query: 1126 CEHCGLIA 1133
            C+ CGL++
Sbjct: 1198 CDICGLMS 1205


>gi|385301281|gb|EIF45483.1| dna-directed rna polymerase [Dekkera bruxellensis AWRI1499]
          Length = 1155

 Score = 1377 bits (3564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/1132 (59%), Positives = 838/1132 (74%), Gaps = 92/1132 (8%)

Query: 96   YLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV------------------- 136
            +LSKP  TE+DG T+TL P+ ARLRNLTYSAPLYV++ K V                   
Sbjct: 16   FLSKPSQTEADGTTSTLLPQEARLRNLTYSAPLYVEMKKMVKESIDDGTTSSSQLQWYKE 75

Query: 137  --IKKGHDGE----------------EVTETQDFTK----------VFIGKVPIMLRSSY 168
              I K  +GE                EV E +  TK          +FIGKVPIML+S +
Sbjct: 76   GEITKFRNGEIAEPAPIPADFNDDEDEVVEEKHGTKFHSSGAETQTIFIGKVPIMLKSKF 135

Query: 169  CTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 228
            CTLY  +E +L E+ ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK  P+  ++VA
Sbjct: 136  CTLYGLTEDELYEIRECPYDMGGYFIINGSEKVLIAQERSAANIVQVFKKPAPSPISHVA 195

Query: 229  EVRSMAESQNRPPSTMFVRML--SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFV 286
            E+RS  E  +R  S++ V++     +S K G  G+ I+ +LPYI+++IPI+IVFRALG +
Sbjct: 196  EIRSALEHGSRLISSIQVKLTRGGASSMKNGGVGRSIKTSLPYIKSDIPIVIVFRALGVI 255

Query: 287  ADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYA 346
             D DIL+HICYD  D QMME+L+P +EE F+IQ+Q+VALD+IG+RG  VG+ RD+RI++A
Sbjct: 256  EDGDILQHICYDENDWQMMEMLKPCIEEGFLIQSQEVALDFIGRRGNAVGIKRDRRIQFA 315

Query: 347  KEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 406
            K+ILQ+E LPH+      ET KAY+ GYI++RLLLCAL RR  DDRDH+G KRLDLAGPL
Sbjct: 316  KDILQREFLPHISQDSGYETNKAYFLGYIVNRLLLCALERREPDDRDHFGKKRLDLAGPL 375

Query: 407  LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANA 465
            L  LFR+LFRKL++D+  Y+Q+C++ G+D N+  A+K+ TITSGLKYSLATGNWG Q  A
Sbjct: 376  LANLFRILFRKLSKDIYRYMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKA 435

Query: 466  AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQA 525
              +RAGVSQVLNR TYASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQA
Sbjct: 436  MSSRAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQA 495

Query: 526  CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRD 585
            CGLVKNL+LM  I+VG+++ PI   LEEWG E   +  P     AT++F+NG WVG HRD
Sbjct: 496  CGLVKNLSLMAGISVGTSSEPISYLLEEWGLEPLSDYDPQEHKNATRVFLNGNWVGTHRD 555

Query: 586  PEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRL 638
            P MLV T+R+LRR   ++ EV +VRDIR +E +I+TD GR  RPLFIV+       K  L
Sbjct: 556  PGMLVDTMRQLRRSGTISPEVSLVRDIREREFKIFTDAGRVYRPLFIVDNDPDSPRKGNL 615

Query: 639  LIKKRDIIALQQRE----SPE-----DG----------GWHDLVAKGFIEYIDTEEEETT 679
             I K D+  ++ RE    +PE     DG          GW  LV  G +EY+D EEEETT
Sbjct: 616  KITKDDVRKIRDREVEEIAPEEDVDEDGNPAEPIRRVYGWDSLVTNGMVEYLDAEEEETT 675

Query: 680  MISMTINDLV---------QARLHPEEAY-----ADTYTHCEIHPSLILGVCASIIPFPD 725
            +I+M+  DL+         +  L P +       + ++THCEIHP++ILGV ASIIPFPD
Sbjct: 676  LIAMSPEDLLPMSKQDQRREVELDPAKRIKTHINSHSFTHCEIHPAMILGVAASIIPFPD 735

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQSAMGKQAMG+Y+TNY  RMDT++ +LYYPQKPL  T++ME L FR+LPAG
Sbjct: 736  HNQSPRNTYQSAMGKQAMGVYLTNYNVRMDTMSNILYYPQKPLAKTQSMEFLKFRELPAG 795

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
             N IVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D+E++ G  + E+F +P+RS
Sbjct: 796  QNCIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDQERRNGISIVEEFEKPNRS 855

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSIS 903
            NT+G + G+Y+KLDDDGL  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  
Sbjct: 856  NTLGFKVGTYEKLDDDGLVAPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTP 915

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
            LR +E+G+VDQV+LTTNA+GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+GMTY  EDMP
Sbjct: 916  LRSAESGIVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGMTYRHEDMP 975

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023
            +T EGI PDII+NPH IPSRMT+  L+EC++ KVAA  G EGDATPFTD+TVD +SK L 
Sbjct: 976  FTAEGIVPDIIINPHCIPSRMTVAHLVECLLSKVAALRGYEGDATPFTDLTVDAVSKLLR 1035

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
            + GYQ RGFE MYNGHTG++L A I+LGPTYYQRL+HMVDDKIH+R RGP Q LTRQP E
Sbjct: 1036 ENGYQSRGFEVMYNGHTGKKLMAQIYLGPTYYQRLRHMVDDKIHARARGPYQNLTRQPME 1095

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIA 1135
            GR+RDGGLRFGEMERDCMIAHG + FLKERL D SDA+RVHVC  CGL+++ 
Sbjct: 1096 GRARDGGLRFGEMERDCMIAHGVAGFLKERLMDSSDAFRVHVCGICGLMSVV 1147


>gi|429964497|gb|ELA46495.1| hypothetical protein VCUG_02039 [Vavraia culicis 'floridensis']
          Length = 1194

 Score = 1372 bits (3551), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 667/1218 (54%), Positives = 874/1218 (71%), Gaps = 83/1218 (6%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            EIT+ED W  IS++F++ GLVRQQLDSFDEFI+ TMQEI+DE+  + +    Q  P    
Sbjct: 3    EITEEDCWTAISSHFDQYGLVRQQLDSFDEFIETTMQEIIDENNTLIV----QSIPSAGK 58

Query: 82   DFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
            +  + I  + FGQIY+SKP ++TE DG+T TLFP  ARLR+LTY+ PLYVDVTK V +  
Sbjct: 59   ESVQKII-LKFGQIYISKPPVITEQDGKTNTLFPCEARLRDLTYACPLYVDVTKSVAEN- 116

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
                E ++   + +V IG VP+MLRSS C L+  S+K+LTELGECPYDQGGYFIINGSEK
Sbjct: 117  ----EESDDHFYRQVPIGLVPVMLRSSCCILHGLSDKNLTELGECPYDQGGYFIINGSEK 172

Query: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
            VLIAQE+M+TN V+VF+K   + Y + AE+RS  +  ++ PS + V+++ +T  +     
Sbjct: 173  VLIAQERMATNVVHVFEK-SVSTYTHYAEIRSAPQKGSKTPSALIVKLVKKTETEF---- 227

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
              +RATLP +R +IP+I+++RALGFV+DK+I+EH+ YD  D +M++++RPS+EEAFVIQ+
Sbjct: 228  -LLRATLPGVRQDIPVIVIYRALGFVSDKEIMEHLIYDPNDKEMLQVIRPSIEEAFVIQD 286

Query: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            Q VALDYIGKR A  G  R+KRI++AK+IL +E LPH+G   FCET+KA++FGY+I RLL
Sbjct: 287  QNVALDYIGKRSAPAGSPREKRIQFAKDILTREFLPHIGDKQFCETRKAFFFGYMIQRLL 346

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
             CA+ R   DDRDHYG KR+DLAGPLL  LF++LFRKL ++   ++QKC++N +D N+  
Sbjct: 347  NCAMKRVTPDDRDHYGKKRMDLAGPLLAQLFKVLFRKLCQETIKHMQKCIENKRDFNIAL 406

Query: 441  AIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 499
             +K   IT G +YSLATGNWG QA A  T+AGV+QVLNR  + STLSHLRR+NSP+GREG
Sbjct: 407  GLKTSIITQGFRYSLATGNWGEQARAMQTKAGVAQVLNRYNFISTLSHLRRVNSPMGREG 466

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+L+ YI+V      ++E LEE+G ++ 
Sbjct: 467  KLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLLAYISVNHPIEGVVELLEEFGLKSL 526

Query: 560  EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 619
            EE++ + + +ATK+FVNG W+GI  + E L   L+R++R+  ++ +V +V+ +R KE+RI
Sbjct: 527  EEVAASEVNKATKVFVNGTWLGITTEREFLYTVLKRMKRQARIHKDVSIVQSLRDKEIRI 586

Query: 620  YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 679
              D GR  RP F+VE  R+L        L++ +      W DLV  G +EY+D EEE+  
Sbjct: 587  LCDAGRPCRPCFVVENNRILFTAEHANMLREGKMI----WEDLVNNGIVEYLDVEEEDQA 642

Query: 680  MISMT---------INDLVQARLHPEEAYA-----------------------------D 701
            MI M+         + D V A L  E   +                              
Sbjct: 643  MICMSPDELYKQQMVTDRVNAELRGERGESVERSKGHASRNMGKHIAPATPGDDLHDLIT 702

Query: 702  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
             YTHCEIHPS+ILG+CAS+IPFPDHNQSPRNTYQSAM KQAMG+Y TN+  RMD+L+ +L
Sbjct: 703  NYTHCEIHPSMILGICASMIPFPDHNQSPRNTYQSAMSKQAMGVYATNFLLRMDSLSNIL 762

Query: 762  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
            +YPQKPLVTTRAME+L FR+LPAG NAIVAIACY+GYNQEDSVIMNQS+IDRG FRS  +
Sbjct: 763  FYPQKPLVTTRAMEYLRFRELPAGQNAIVAIACYTGYNQEDSVIMNQSAIDRGLFRSFLY 822

Query: 822  RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
            R+Y D+E   G    E F +P R   + M++ +YDKLD+DG+  PG RV+GEDV+IGK  
Sbjct: 823  RTYTDQETMNGPGCVEVFAKPRRGEVLRMKNLNYDKLDEDGIVNPGARVTGEDVLIGKIL 882

Query: 882  PISQ----------DEAQGQ------ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLR 925
            P+ +          D   G+      A+  + +D S ++R +E G+VD V++ TN +G +
Sbjct: 883  PVIERTGADGGALIDNKDGKINTESNATNVSWKDASTAMRPTEEGVVDSVIV-TNREGYK 941

Query: 926  FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 985
            F KV++RS R+P++GDKF+SRHGQKGT+G+T   EDMP+T EGI PDII+NPH IPSRMT
Sbjct: 942  FTKVKIRSCRVPEMGDKFASRHGQKGTIGITLRAEDMPFTSEGIIPDIIINPHCIPSRMT 1001

Query: 986  IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 1045
            IG LIEC++GKV+A  G+EGD TPF+DVTV+ IS+ L   GY+ RG ETMYNG TGR+L 
Sbjct: 1002 IGHLIECLLGKVSALAGEEGDGTPFSDVTVEAISEQLKDFGYEHRGLETMYNGMTGRKLD 1061

Query: 1046 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 1105
            A IF+GPTYYQRLKHMV DK+H+R  GP+Q+LTRQPAEGRSRDGGLRFGEMERDC+I+HG
Sbjct: 1062 AQIFIGPTYYQRLKHMVQDKVHARAHGPLQVLTRQPAEGRSRDGGLRFGEMERDCIISHG 1121

Query: 1106 ASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLL 1165
             S FL+ERLF+ SD + + VCE CGL  + +       C+GC NKT +  V +PYA KLL
Sbjct: 1122 TSLFLRERLFEVSDFFSLIVCEQCGLFCLED------GCKGCGNKTKLAIVEMPYAFKLL 1175

Query: 1166 FQELMAMAIAPRMLTKED 1183
             QELM M IAPR+   +D
Sbjct: 1176 LQELMGMNIAPRLRLCDD 1193


>gi|440493525|gb|ELQ75984.1| RNA polymerase II, second largest subunit, partial
            [Trachipleistophora hominis]
          Length = 1381

 Score = 1371 bits (3548), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/1215 (54%), Positives = 874/1215 (71%), Gaps = 80/1215 (6%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            EIT+ED W  IS++F++ GLVRQQLDSF+EFI+ TMQEI+DE+  + +    Q  P    
Sbjct: 193  EITEEDCWTAISSHFDQYGLVRQQLDSFNEFIETTMQEIIDENNTLIV----QSIPSAGK 248

Query: 82   DFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
            +  + I  + FGQIY+SKP ++TE DG+T+TLFP  ARLR+LTY+ PLYVDVTK V++  
Sbjct: 249  ESVQKII-LKFGQIYISKPPVITEQDGKTSTLFPCEARLRDLTYACPLYVDVTKSVVEN- 306

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
                E ++   + +V IG VP+MLRSS C L+  S+K+LTELGECPYDQGGYF+INGSEK
Sbjct: 307  ----EESDDHFYRQVPIGLVPVMLRSSCCILHGLSDKNLTELGECPYDQGGYFVINGSEK 362

Query: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
            VLIAQE+M+TN V+VF+K     Y + AE+RS  +  ++ PS + V+++ +T  +     
Sbjct: 363  VLIAQERMATNVVHVFEKSLAT-YTHYAEIRSAPQKGSKTPSALIVKLVKKTETEF---- 417

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
              +RATLP +R +IP+I+++RALGFV+DK+I+EH+ YD  D +M++++RPS+EEAFVIQ+
Sbjct: 418  -LLRATLPGVRQDIPVIVIYRALGFVSDKEIMEHLIYDPNDKEMLQVIRPSIEEAFVIQD 476

Query: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            Q VALDYIGKR A  G  R+KRI++AK+IL +E LPH+G   FCET+KA++FGY+I RLL
Sbjct: 477  QNVALDYIGKRSAPAGSPREKRIQFAKDILIREFLPHIGDKQFCETRKAFFFGYMIQRLL 536

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
             CA+ R + DDRDHYG KR+DLAGPLL  LF++LFRKL ++   ++QKC++N +D N+  
Sbjct: 537  NCAMKRVSPDDRDHYGKKRMDLAGPLLAQLFKVLFRKLCQETIKHMQKCIENKRDFNIAL 596

Query: 441  AIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 499
             +K   IT G +YSLATGNWG Q+ A  T+AGV+QVLNR  + STLSHLRR+NSP+GREG
Sbjct: 597  GLKTSIITQGFRYSLATGNWGEQSRAMQTKAGVAQVLNRYNFISTLSHLRRVNSPMGREG 656

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+L+ YI+V      I+E LEE+G ++ 
Sbjct: 657  KLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLLAYISVNHPIEGIVELLEEFGLKSL 716

Query: 560  EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 619
            EE++P+ + +ATK+FVNG W+GI  + E L   L+R++R+  ++ +V +V+ +R KE+RI
Sbjct: 717  EEVAPSEVYKATKVFVNGTWLGITTEREFLYTVLKRMKRQARIHKDVSIVQSLRDKEIRI 776

Query: 620  YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 679
              D GR  RP F+VE  R+L        L++ +      W DLV  G +EY+D EEE+  
Sbjct: 777  LCDVGRPCRPCFVVENNRILFTAEHANMLREGKMI----WEDLVNNGIVEYLDVEEEDQA 832

Query: 680  MISMT---------INDLVQARLHPEEA--------------------------YADTYT 704
            MI M+         + D + A L  E                                YT
Sbjct: 833  MICMSPEELYEQQMVTDRINAELRGESVERPRERVLKHTSKHVGSVYPGNDPHDLITNYT 892

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPS+ILG+CAS+IPFPDHNQSPRNTYQSAM KQAMG+Y TN+  RMD+L+ +L+YP
Sbjct: 893  HCEIHPSMILGICASMIPFPDHNQSPRNTYQSAMSKQAMGVYATNFLLRMDSLSNILFYP 952

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPLVTTRAME+L FR+LPAG NAIVAIACY+GYNQEDSVIMNQS+IDRG FRS  +R+Y
Sbjct: 953  QKPLVTTRAMEYLRFRELPAGQNAIVAIACYTGYNQEDSVIMNQSAIDRGLFRSFLYRTY 1012

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI- 883
             D+E   G    E F +P R   + M++ +YDKLD+DG+  PG RV+GEDV+IGK  P+ 
Sbjct: 1013 TDQETMNGPGCVEVFAKPRRGEVLRMKNLNYDKLDEDGIVNPGVRVTGEDVLIGKILPVI 1072

Query: 884  ------------SQDE---AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 928
                        ++DE    +      + +D S ++R +E G+VD V++ TN +G +F K
Sbjct: 1073 ERMDVNGNSLIDNRDEKINTESNTMNVSWKDASTAMRPTEEGVVDSVIV-TNREGYKFTK 1131

Query: 929  VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
            V++RS R+P++GDKF+SRHGQKGT+G+T   EDMP+T EGI PDII+NPH IPSRMTIG 
Sbjct: 1132 VKIRSCRVPEMGDKFASRHGQKGTIGITLRAEDMPFTSEGIIPDIIINPHCIPSRMTIGH 1191

Query: 989  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 1048
            LIEC++GKV+A  G+EGD TPF+DVTV  IS+ L   GY+ RG ETMYNG TGR+L A I
Sbjct: 1192 LIECLLGKVSALAGEEGDGTPFSDVTVGAISEQLKDFGYEHRGLETMYNGMTGRKLDAQI 1251

Query: 1049 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 1108
            F+GPTYYQRLKHMV DK+H+R  GP+Q+LTRQPAEGRSRDGGLRFGEMERDC+I+HG S 
Sbjct: 1252 FIGPTYYQRLKHMVQDKVHARAHGPLQVLTRQPAEGRSRDGGLRFGEMERDCIISHGTSL 1311

Query: 1109 FLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1168
            FL+ERLF+ SD + + VCE CGL  + +       C+GC NKT +  V +PYA KLL QE
Sbjct: 1312 FLRERLFEVSDFFSLVVCEQCGLFCLED------GCKGCGNKTKLAIVEMPYAFKLLLQE 1365

Query: 1169 LMAMAIAPRMLTKED 1183
            LM M IAPR+   +D
Sbjct: 1366 LMGMNIAPRLRLCDD 1380


>gi|321257963|ref|XP_003193762.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus gattii WM276]
 gi|317460232|gb|ADV21975.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus gattii
            WM276]
          Length = 1193

 Score = 1368 bits (3540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/1235 (55%), Positives = 864/1235 (69%), Gaps = 120/1235 (9%)

Query: 5    DYDYEEQ----HQQEEE----DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNT 56
            DYDY +Q    + ++EE    D++E I+QED W VI+++FEEKGLVRQQL+SF+EFI+NT
Sbjct: 23   DYDYTQQTAPKNDEDEEKYDVDDDEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENT 82

Query: 57   MQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKA 116
            MQEIVD+ + + +   +Q+  G   D     Y+ISFGQIYL++   TE DG T  LFP+ 
Sbjct: 83   MQEIVDDHSRLTLDQFTQYT-GVAGDETRR-YEISFGQIYLARVNHTEMDGRTNMLFPQE 140

Query: 117  ARLRNLTYSAPLYVDVTKRVIKK---------------GHDGEEVTETQDFTKVFIGKVP 161
            ARLRNLTYSAPLYVD+ KR +                 G DGE   E+ +  K  IGKVP
Sbjct: 141  ARLRNLTYSAPLYVDIKKRTLTASGVDDPVEADWQPAVGDDGE--VESAEEEKTSIGKVP 198

Query: 162  IMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 221
            +M+RS++C L+   +    E+GECPYDQGGYFII+GSEKVLIAQE+M+TNHV+VF K  P
Sbjct: 199  VMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVFLKAAP 258

Query: 222  NKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFR 281
             ++ Y AE+ S  E   R  +   VRM +R S   G++G  IR +LPY + +IP+++VFR
Sbjct: 259  ARFTYFAEINSQKEKGGRVANHTEVRMYARAS---GTTGGVIRVSLPYTKVDIPLVVVFR 315

Query: 282  ALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDK 341
            ALG V D+D+L H+C+  +D  ++E+L+PS+EE+F +Q++  ALD+IG+RG      R +
Sbjct: 316  ALGIVPDRDVLSHVCFGAEDEALLEMLQPSIEESFAVQDRDTALDFIGRRGQHEKAPRAQ 375

Query: 342  RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
            R + A +IL KE LPHV T +  E+KKAY+ GY+                          
Sbjct: 376  RQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYM-------------------------- 409

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
                                       CV+  K+  L  AI+  T+T GLKY+LATGNWG
Sbjct: 410  ---------------------------CVEQNKEFALNMAIRPNTVTDGLKYALATGNWG 442

Query: 462  QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
            + +   TRAGVSQVLNR T+ASTLSHLRR N+PIGR+ K AKPRQLHN+ WGM+CPAETP
Sbjct: 443  KRD--NTRAGVSQVLNRYTFASTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETP 500

Query: 522  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
            EG ACGLVKNLALM YI+VGS + P++EFLEEWG E+  E   A  P ATK+FVNG W+G
Sbjct: 501  EGSACGLVKNLALMSYISVGSYSAPVMEFLEEWGLEDLSEYQDA--PTATKVFVNGVWMG 558

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLL 639
            IHRD   L   L ++RR   +  EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L 
Sbjct: 559  IHRDAPTLHNNLLQMRRGGQLKYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLR 618

Query: 640  IKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL---- 693
            +K+  I  + Q   E    G W  L+++G +EY+D  EEET +I+MT  DLV AR     
Sbjct: 619  LKRDHIDRIDQLADEGLLSGAWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSK 678

Query: 694  ---------HPEEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
                     H  E++           +  YTH EIHPS+ILGVCASIIPFPDHNQSPRNT
Sbjct: 679  HELVRDRAAHNLESFDPAARIKSTVWSQQYTHMEIHPSMILGVCASIIPFPDHNQSPRNT 738

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMG+ +TNYQ RMDT+  VLYYPQKPL TTR+ME+L F +LPAG NAIVAI 
Sbjct: 739  YQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIM 798

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSSIDRG FRSL+FRSY D EK  G +  E   +PDR+ T+ M+HG
Sbjct: 799  CYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHG 858

Query: 854  S---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 908
            +   Y KLD DGL  PGT V+G+D++IGKT P+ +D E  GQ ++ +T+RD S  L+ +E
Sbjct: 859  TSDRYAKLDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTE 918

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
             G+VDQV+L+TN +G  FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 919  QGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEG 978

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            + PDII+NPHAIPSRMTIG L+EC++ KV+   G EGDATPFT++TV+ +SK L   GYQ
Sbjct: 979  LVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEAVSKVLRAKGYQ 1038

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
             RGFE +Y+GHTGR+L A ++ GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRD
Sbjct: 1039 SRGFEVLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRD 1098

Query: 1089 GGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK 1148
            GGLRFGEMERDCMI+HG + FLKER++D SDA+R+HVC+ CGL+A+ANLKK  F C  C+
Sbjct: 1099 GGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDICGLMAVANLKKQEFYCSVCR 1158

Query: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKED 1183
            N T I QV+IPYA KLLFQEL AM IA RM  + D
Sbjct: 1159 NSTQISQVYIPYAAKLLFQELQAMNIACRMYGETD 1193


>gi|428180722|gb|EKX49588.1| hypothetical protein GUITHDRAFT_159421 [Guillardia theta CCMP2712]
          Length = 1185

 Score = 1367 bits (3538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/1185 (56%), Positives = 863/1185 (72%), Gaps = 39/1185 (3%)

Query: 19   EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV-DESADIEIRPESQHNP 77
            +++EI Q D W +I  YF+E GLV+QQ  S++EFI   +QE++ D    IE+    Q+ P
Sbjct: 6    DDDEIRQPDTWEIIRKYFDENGLVQQQRASYNEFILQNVQEVIEDYKGQIEVIATPQYKP 65

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
            G + D+ + I ++ FG++ +++P +TE +G    L P  ARLR LTYS  L+VD+T R  
Sbjct: 66   GTKQDYKQKI-QVDFGRVRIAQPNITEVEGRKERLLPYMARLRKLTYSCQLFVDITLRKY 124

Query: 138  KKGHDG-EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN 196
            K   DG E++    +  +V +GKVP+MLRS  C L+    KD+ +L ECP DQGGYF+IN
Sbjct: 125  KVASDGSEQLDNIDEHERVPLGKVPVMLRSEVCRLFGKYNKDIMDLKECPQDQGGYFVIN 184

Query: 197  GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR-TSAK 255
            GSEKVL+AQE+ + N V+VFKK    K+AYVAEV S  E  N+PPST+++++ +R  +A+
Sbjct: 185  GSEKVLLAQERRANNLVFVFKKTL-GKFAYVAEVGSQVEKGNKPPSTLYMKLWNRENNAR 243

Query: 256  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA 315
             G+S   +  TLPY+R EIPI+IVFRALG  +D++ILEHI Y+ +D QMME LRPSL+EA
Sbjct: 244  FGAS---VVLTLPYVRKEIPIVIVFRALGIESDREILEHIVYNLKDVQMMEALRPSLDEA 300

Query: 316  FV---IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 372
                 +  ++ ALDYIG+R   +  +R+ RI++A +IL +E+LPH+G  +   TKK Y+ 
Sbjct: 301  AQGKDLSTREAALDYIGRRALGMTTSRENRIQHAHDILIRELLPHIGITEESLTKKQYFL 360

Query: 373  GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 432
            GY+ +RLL C+LGRR  DDRDHYGNKR+D+AGPLL GLF+  F++L ++ R  +Q  +DN
Sbjct: 361  GYVCNRLLACSLGRRQPDDRDHYGNKRVDMAGPLLAGLFKGCFKRLVKEFRKSLQDSLDN 420

Query: 433  GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA----GTRAGVSQVLNRLTYASTLSHL 488
            GK+VN+  A K   IT G+KY +ATGNWG   AA     TR GVSQVL+RLT+A+ LSHL
Sbjct: 421  GKEVNMNTAFKQDFITKGIKYCMATGNWGVGKAAVAGQATRTGVSQVLSRLTFAAALSHL 480

Query: 489  RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
            RR N+PIG+EGK+A+PRQLHN+QWG++CPAETPEGQACGLVKNL+LM Y++VG A+  I+
Sbjct: 481  RRANTPIGKEGKIAQPRQLHNTQWGVVCPAETPEGQACGLVKNLSLMTYVSVGGASQVII 540

Query: 549  EFLEEWGTENFEEI-SPAVIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT- 604
            E L+  G E  EE+ SPA+   +  +K+FVNG WVG+  DP+ L  TLR  RR + +   
Sbjct: 541  ELLQAGGMEELEELASPAICASSRFSKVFVNGVWVGMTDDPDNLANTLREQRREMTIGGM 600

Query: 605  --EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR--LLIKKRDIIALQQRESPEDGGWH 660
              EVGV RDI  +EL I TDYGR  RPL IV+K+   L +K+ +II + Q E      W 
Sbjct: 601  IHEVGVARDIGERELFISTDYGRLMRPLLIVDKETGFLNLKRSNIIHMTQNEQTT---WS 657

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASI 720
            +++ KGFIEYID  EEET  I+M + D+    L+        YTHCEIHP++ILGVCASI
Sbjct: 658  EILRKGFIEYIDVMEEETCYIAMLVKDVGSNDLY-------QYTHCEIHPAMILGVCASI 710

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMGIY TNYQ R+DTLA+VLYYPQKPLV T +M++L FR
Sbjct: 711  IPFPDHNQSPRNTYQSAMGKQAMGIYATNYQVRIDTLAHVLYYPQKPLVKTHSMDYLKFR 770

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
            +LPAG N IVAIA YSGYNQEDS+IM+QSSIDRG FRS+F+RSY DE+K  G L  E F 
Sbjct: 771  ELPAGQNLIVAIAVYSGYNQEDSLIMSQSSIDRGMFRSMFYRSYTDEQKTEGVLCLEQFE 830

Query: 841  RPDRSNT-MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRD 899
            +P R          +YDKLD DGL  P   V   D+IIGKTT ++  +   QA    +RD
Sbjct: 831  KPQREELGSASSRVNYDKLDVDGLVFPAQNVEDRDIIIGKTTLVTNSDDSDQAQIAVKRD 890

Query: 900  HSISLRHSETGMVDQVLLTTNAD-GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
             S  LRH+E G+VDQVLLTTN+D G RFV+++VR+VR+PQIGDKF+SRHGQKGTVG+TY 
Sbjct: 891  SSTRLRHNEHGVVDQVLLTTNSDTGQRFVQIKVRAVRVPQIGDKFASRHGQKGTVGITYR 950

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
            Q+DMP+T EG++PD+IVNPHAIPSRMTIG LIE ++GKV    G EGDATPF +V V ++
Sbjct: 951  QDDMPFTSEGVSPDLIVNPHAIPSRMTIGHLIETLLGKVGCLTGDEGDATPFNEVNVKDV 1010

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
            S  LH  GYQ  G E +YNGHTGR LTA++F GPTYYQRLKHMVDDKIHSR RGP Q+L 
Sbjct: 1011 SDMLHSRGYQRHGNERLYNGHTGRPLTALVFFGPTYYQRLKHMVDDKIHSRARGPTQMLN 1070

Query: 1079 RQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLK 1138
            RQP EGR+RDGGLRFGEMERDCMIAHG+++ L+E+LF QSD Y  H+C+ CGLIAIANL 
Sbjct: 1071 RQPMEGRARDGGLRFGEMERDCMIAHGSANVLREKLFTQSDGYMTHICQDCGLIAIANLD 1130

Query: 1139 KNSFECRG---CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             N + C     C+N + I  + IPYA KLLFQELMAM IAPR++T
Sbjct: 1131 SNLYRCPNQATCRNSS-IGMIEIPYAAKLLFQELMAMQIAPRLMT 1174


>gi|58266096|ref|XP_570204.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57226437|gb|AAW42897.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus
            neoformans var. neoformans JEC21]
          Length = 1193

 Score = 1367 bits (3538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/1235 (55%), Positives = 862/1235 (69%), Gaps = 120/1235 (9%)

Query: 5    DYDYEEQH----QQEEE----DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNT 56
            DYDY +Q      ++EE    DE+E I+QED W VI+++FEEKGLVRQQL+SF+EFI+NT
Sbjct: 23   DYDYSQQTAPKGDEDEEKYDVDEDEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENT 82

Query: 57   MQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKA 116
            MQEIVD+ + + +   +Q+  G   D     Y+ISFGQIYL++   TE DG T  LFP+ 
Sbjct: 83   MQEIVDDHSRLTLDQFTQYT-GVAGDETRR-YEISFGQIYLARVNHTEMDGRTNMLFPQE 140

Query: 117  ARLRNLTYSAPLYVDVTKRVIKK---------------GHDGEEVTETQDFTKVFIGKVP 161
            ARLRNLTYSAPLYVD+ KR +                 G DGE   E  +  K  IGKVP
Sbjct: 141  ARLRNLTYSAPLYVDIKKRTLTASGVDDPVEADWQPAVGDDGE--VEGAEEEKTSIGKVP 198

Query: 162  IMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 221
            +M+RS++C L+   +    E+GECPYDQGGYFII+GSEKVLIAQE+M+TNHV+VF K  P
Sbjct: 199  VMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVFLKAAP 258

Query: 222  NKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFR 281
             ++ Y AE+ S  E   R  +   VRM +R S   G++G  IR +LPY + +IP+++VFR
Sbjct: 259  ARFTYFAEINSQKEKGGRVANHTEVRMYARAS---GTTGGVIRVSLPYTKVDIPLVVVFR 315

Query: 282  ALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDK 341
            ALG V D+D+L HIC+  +D  ++E+L+PS+EE+F +Q++  ALD+IG+RG      R +
Sbjct: 316  ALGIVPDRDVLSHICFGAEDEALLEMLQPSIEESFAVQDRDTALDFIGRRGQHEKAPRAQ 375

Query: 342  RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
            R + A +IL KE LPHV T +  E+KKAY+ GY+                          
Sbjct: 376  RQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYM-------------------------- 409

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
                                       CV+  K+  L  AI+  TIT GLKY+LATGNWG
Sbjct: 410  ---------------------------CVEQNKEFALNMAIRPNTITDGLKYALATGNWG 442

Query: 462  QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
            + +   TRAGVSQVLNR T+ASTLSHLRR N+PIGR+ K AKPRQLHN+ WGM+CPAETP
Sbjct: 443  KRD--NTRAGVSQVLNRYTFASTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETP 500

Query: 522  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
            EG ACGLVKNLALM YI+VGS + P++EFLEEWG E+  E   A  P ATK+FVNG W+G
Sbjct: 501  EGSACGLVKNLALMSYISVGSYSAPVMEFLEEWGLEDLSEYQDA--PTATKVFVNGVWMG 558

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLL 639
            IHRD   L   L ++RR   +  EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L 
Sbjct: 559  IHRDAPTLHNNLLQMRRGGQLKYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLR 618

Query: 640  IKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL---- 693
            +K+  I  + Q   E    G W  L+++G +EY+D  EEET +I+MT  DLV AR     
Sbjct: 619  LKRDHIDRIDQMADEGLLSGAWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSK 678

Query: 694  ---------HPEEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
                     H  E++           +  YTH EIHPS+ILGVCASI+PFPDHNQSPRNT
Sbjct: 679  HELVRDRAAHNLESFDPAARIKSTVWSQQYTHMEIHPSMILGVCASIVPFPDHNQSPRNT 738

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMG+ +TNYQ RMDT+  VLYYPQKPL TTR+ME+L F +LPAG NAIVAI 
Sbjct: 739  YQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIM 798

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSSIDRG FRSL+FRSY D EK  G +  E   +PDR+ T+ M+HG
Sbjct: 799  CYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHG 858

Query: 854  S---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 908
            +   Y KLD DGL  PGT V+G+D++IGKT P+ +D E  GQ ++ +T+RD S  L+ +E
Sbjct: 859  TGDRYAKLDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTE 918

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
             G+VDQV+L+TN +G  FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 919  QGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEG 978

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            + PDII+NPHAIPSRMTIG L+EC++ KV+   G EGDATPFT++TV+ +SK L   GYQ
Sbjct: 979  LVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTELTVEAVSKVLRAKGYQ 1038

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
             RGFE +Y+GHTGR+L A ++ GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRD
Sbjct: 1039 SRGFEVLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRD 1098

Query: 1089 GGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK 1148
            GGLRFGEMERDCMI+HG + FLKER++D SDA+R+HVC+ CGL+A+ANLKK  F C  C+
Sbjct: 1099 GGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCR 1158

Query: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKED 1183
            N T I QV+IPYA KLLFQEL AM IA RM  + D
Sbjct: 1159 NSTQISQVYIPYAAKLLFQELQAMNIACRMYGETD 1193


>gi|414871745|tpg|DAA50302.1| TPA: hypothetical protein ZEAMMB73_468424, partial [Zea mays]
          Length = 762

 Score = 1359 bits (3518), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 645/710 (90%), Positives = 684/710 (96%), Gaps = 1/710 (0%)

Query: 18  DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
           +++E+ITQ+DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP
Sbjct: 54  EQQEDITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 113

Query: 78  GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
           G+Q++FAET+++ISFGQIYLSKPMMTE+DGETATLFPK+ARLRNLTYSAPLYVDV+ RV+
Sbjct: 114 GRQAEFAETLHRISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVM 173

Query: 138 KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 197
           KKGHD EEVTET ++ KVFIGKVPIMLRSSYCTLYQ SEKDLTELGECPYDQGGYFIING
Sbjct: 174 KKGHDCEEVTETAEYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIING 233

Query: 198 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
           SEKVLIAQEKMSTNHVYVFKKRQPNK+AYVAEVRSMAE+QNRP S MFVRMLSR  AKGG
Sbjct: 234 SEKVLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASGMFVRMLSRAGAKGG 293

Query: 258 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
           SSGQYIRATLPYIR +IPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEEAFV
Sbjct: 294 SSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 353

Query: 318 IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
           IQNQQVALDYIGKRGATVGVTR+KRIKYAKEILQKEMLPHVG G+FCETKKAYYFGYIIH
Sbjct: 354 IQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIH 413

Query: 378 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
           RLL+CAL RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGK+VN
Sbjct: 414 RLLMCALSRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVN 473

Query: 438 LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
           LQFAIKAKT+TSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR
Sbjct: 474 LQFAIKAKTVTSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 533

Query: 498 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
           EGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEWGTE
Sbjct: 534 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTE 593

Query: 558 NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
           NFEEISPAVIPQA KIFVNGCWVGIHR+P++LVKTLRRLRR++DVNTEVGVVRDIRLKEL
Sbjct: 594 NFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKEL 653

Query: 618 RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
           R+YTDYGRCSRPLFIVE QRLLIKK  I ALQQRE+P D GWH+LV+KG+IEYIDTEEEE
Sbjct: 654 RLYTDYGRCSRPLFIVEGQRLLIKKAHIRALQQRETP-DEGWHELVSKGYIEYIDTEEEE 712

Query: 678 TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 727
           TTMISMTINDL  AR +PEEAY++TYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 713 TTMISMTINDLQNARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHN 762


>gi|449016392|dbj|BAM79794.1| RNA polymerase II second largest subunit [Cyanidioschyzon merolae
            strain 10D]
          Length = 1184

 Score = 1359 bits (3518), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/1184 (56%), Positives = 857/1184 (72%), Gaps = 27/1184 (2%)

Query: 13   QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
            Q+     E++++ +D W VISA+F EKGLV+QQLDSF+EFI N  Q IVDE+ DI +RP+
Sbjct: 5    QRASVSAEDQLSADDIWDVISAHFREKGLVKQQLDSFNEFIGNACQTIVDETPDIVLRPQ 64

Query: 73   SQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
             QH PG+++    T   ISFGQ+   KP  TE DG    LFP  ARLRNL+YS+PLYV+V
Sbjct: 65   PQHVPGKRAPPEGTRTIISFGQLSAGKPTFTEVDGTPTVLFPHEARLRNLSYSSPLYVEV 124

Query: 133  TKRVIKKGHDGEEVTETQDFTK-VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
            T+  I+     +E  E +   + +++G+VP+ML S +C L   +E  L  +GECPYDQGG
Sbjct: 125  TRIDIEIDPATKEEREFRHPARNLYLGRVPMMLHSDFCHLNGLTEYQLQNIGECPYDQGG 184

Query: 192  YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR 251
            YFIINGSEK LIAQE+M  N VYVFK+     Y++VAE RS+ +  N+P  T  V+ ++R
Sbjct: 185  YFIINGSEKALIAQERMGNNAVYVFKRASTAPYSHVAECRSVLDRGNKPARTTQVK-ITR 243

Query: 252  TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPS 311
               KG  SGQ I  +LPYIR +IP+ +VFRALG  +D++I+E + YD  D +M  LL PS
Sbjct: 244  GGVKG-QSGQCIMVSLPYIRADIPLAVVFRALGLESDREIMERVIYDTDDEEMQTLLMPS 302

Query: 312  LEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYY 371
            L+   VI +Q +ALD+IGKRG +VG TRD+RI+YA+E+LQ E LPH+G G + E  KA++
Sbjct: 303  LDMGSVITDQNLALDFIGKRGNSVGATRDRRIRYAREVLQLEFLPHIGIGAY-EPAKAWF 361

Query: 372  FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 431
             GY+ H+LL   LGRR EDDRDHYG KRLDLAGPLL GLFR LF+K+ +D R+ +Q  +D
Sbjct: 362  LGYMTHQLLATVLGRREEDDRDHYGLKRLDLAGPLLTGLFRQLFQKVVKDARSILQHQLD 421

Query: 432  NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 491
             GK++N+  A+K +TIT  LKY++ATGNW     A  R GVSQVLNRLTYA++LSHLRRL
Sbjct: 422  MGKELNIALAVKGRTITDNLKYAIATGNWRADRKAAVRTGVSQVLNRLTYAASLSHLRRL 481

Query: 492  NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 551
            NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQ+CGLVKNLALM YI+VG+    ILE L
Sbjct: 482  NSPIGREGKLAKPRQLHNTQWGMICPAETPEGQSCGLVKNLALMAYISVGTPVADILEML 541

Query: 552  EEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRD 611
              +  E   E++   I + TK+F+NG WVGIH  PE LV  LR LRR  ++  EV +V D
Sbjct: 542  YNFEMEPLYEVTAERIKRQTKVFLNGSWVGIHPRPEELVTALRVLRRSGEIADEVSIVFD 601

Query: 612  IRLKELRIYTDYGRCSRPLFIV--EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIE 669
            +   ELRI TD GR  RPLFIV  E   L I+K+ I  L+  E+     +  LV +G +E
Sbjct: 602  VSHGELRIGTDAGRVCRPLFIVDTETNLLRIRKQHIDLLRDYET-TGYTFSRLVREGLVE 660

Query: 670  YIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 729
            Y+D  EEET MI+M    L  +  H       TYTH EIHPS+I GVCASIIPFPDHNQS
Sbjct: 661  YLDVNEEETVMIAMDQEHLATSGDHA------TYTHMEIHPSMIFGVCASIIPFPDHNQS 714

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMG+Y+TNY  RMDT+A+VLYYPQKPLVTTR MEHL FR LPAGINA+
Sbjct: 715  PRNTYQSAMGKQAMGMYLTNYNLRMDTMAHVLYYPQKPLVTTRVMEHLQFRTLPAGINAV 774

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAIACYSGYNQEDS+IM+Q+++DRG FRS++++++++EE+K     +E   +PD + T+G
Sbjct: 775  VAIACYSGYNQEDSLIMSQAAVDRGLFRSVYYKTFKEEEQKKLFGQQETISKPDPAVTLG 834

Query: 850  MRHG-SYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS----------QDEAQGQAS---RY 895
            M+   +Y KL+ DGL   G RV G DV++GKT P+           Q+ A G A+     
Sbjct: 835  MKEAHAYSKLESDGLIGVGERVRGGDVLVGKTAPLGASRAAVDAAEQETASGMAALSGMR 894

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
            TR+D S+ ++ +E G+ D+VL+ T   G R VKVRVR+  IPQ+GDKF+SRHGQKGT+G+
Sbjct: 895  TRKDCSLVMKRTERGVTDKVLICTGEAGTRMVKVRVRTELIPQVGDKFASRHGQKGTMGL 954

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1015
               +ED+P+ V+GI PDII+NPHA+PSRMTI  LIE ++GKV A  G EGDAT FT VTV
Sbjct: 955  CMPEEDLPFNVDGIRPDIIMNPHAVPSRMTIAHLIEALLGKVCALSGVEGDATAFTPVTV 1014

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1075
            D I + L + GY  RG+E ++NG TGR + A IF+G  YYQRL+H+V  K+ +R RG VQ
Sbjct: 1015 DAIGRELVRHGYDPRGWELLFNGQTGRPMNAAIFMGVNYYQRLRHVVYQKLGARARGAVQ 1074

Query: 1076 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIA 1135
            +LTRQP EG+SR GGLR GEME+D  +A+GAS  LKER+ D SD YRVHVCE CGLIAIA
Sbjct: 1075 VLTRQPVEGKSRGGGLRIGEMEKDVFVAYGASAVLKERMCDVSDKYRVHVCERCGLIAIA 1134

Query: 1136 NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            +L+++ FECRGCKNKT I  V IPYACKLLFQELM+MAIAPRM+
Sbjct: 1135 DLRRSIFECRGCKNKTRIAAVEIPYACKLLFQELMSMAIAPRMV 1178


>gi|119177838|ref|XP_001240650.1| hypothetical protein CIMG_07813 [Coccidioides immitis RS]
          Length = 1152

 Score = 1357 bits (3511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1148 (57%), Positives = 835/1148 (72%), Gaps = 72/1148 (6%)

Query: 57   MQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKA 116
            MQE+V+E   + +      +           Y++ FG + L++P MTE DG T+ + P+ 
Sbjct: 1    MQELVEEQGQVTLDQTIAPDEDDPDPVMVRRYELKFGTVMLARPSMTEGDGATSIMLPQE 60

Query: 117  ARLRNLTYSAPLYVDVTKRVIK------------------KGHDGEEVTET--------- 149
            ARLRNLTY++PLY+ +TK++ +                  KG +      T         
Sbjct: 61   ARLRNLTYASPLYLGITKKIAEGRERSLAERDEDDDEPDAKGDEERRARGTYLQWEPKAL 120

Query: 150  ----QDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ 205
                 D   +FIGK+PIML+S YC L    E  L    ECPYD GGYFIINGSEKVLIAQ
Sbjct: 121  PEDEADEENIFIGKMPIMLKSKYCILKDLGEHALYNWNECPYDSGGYFIINGSEKVLIAQ 180

Query: 206  EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 265
            E+ + N V VFKK  P+   YVAE+RS  E  +R  S + +++ ++  +  G  G  IR+
Sbjct: 181  ERSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGSRILSQLSIKLFAKGDSSKGGFGPTIRS 240

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
            TLPYI+T+IPI++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VAL
Sbjct: 241  TLPYIKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVAL 300

Query: 326  DYIGKRGAT-VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCAL 384
            D+I KRG++   +  +KR++YA++I+QKE LPH+   +  ET+KA++ GY++H+LL CAL
Sbjct: 301  DFISKRGSSPTSMNHEKRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCAL 360

Query: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
            GRR  DDRDH+G KRLDLAGPLL  LFR+LF +LT+D+  YVQ+CV+  + + L   +KA
Sbjct: 361  GRRDVDDRDHFGKKRLDLAGPLLANLFRVLFMRLTKDLYKYVQRCVETNRQLYLNIGVKA 420

Query: 445  KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
             T+T GLKY+LATGNWG Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AK
Sbjct: 421  STLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAK 480

Query: 504  PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
            PRQLHN+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  
Sbjct: 481  PRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFE 540

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
            P V P +TKIFVNG WVG+HRDP  LV T++ LRRR  ++ EV +V DIR +E +I+TD 
Sbjct: 541  PQVSPNSTKIFVNGVWVGVHRDPSHLVSTVQSLRRRNMISHEVSLVWDIRDREFKIFTDA 600

Query: 624  GRCSRPLFIVEKQ-------RLLIKKRDIIALQ-QRESPED----------GGWHDLVAK 665
            GR  RPLF+V+          L++ K  I  L+  +E P D           GW  LV  
Sbjct: 601  GRVCRPLFVVDNDPKSENSGSLVLTKEHIHKLEADKEIPADLDPEERRERYYGWDGLVKS 660

Query: 666  GFIEYIDTEEEETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHC 706
            G +EY+D EEEET MI M+  DL      QA   PEE  +D              T+THC
Sbjct: 661  GVVEYVDAEEEETIMIVMSPEDLEVSKQYQAGYIPEEDTSDPNRRVRSKLSQKAHTWTHC 720

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            EIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYYPQK
Sbjct: 721  EIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQK 780

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
            PL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D
Sbjct: 781  PLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTD 840

Query: 827  EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-Q 885
             EK +G  V E F +P RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT P++ +
Sbjct: 841  SEKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPE 900

Query: 886  DEAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
             E  GQ ++ +T+ D S  LR +E+G+VDQVL++T+ + L+FVKVR+R+ +IPQIGDKF+
Sbjct: 901  SEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFA 960

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT+G+T+ QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G E
Sbjct: 961  SRHGQKGTIGVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYE 1020

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTDVTVD++S  L + GYQ RGFE MYNGHTGR+L A IFLGPTYYQRL+HMVDD
Sbjct: 1021 GDATPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDD 1080

Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
            KIH+R RGP QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +RVH
Sbjct: 1081 KIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVH 1140

Query: 1125 VCEHCGLI 1132
            +C+ CGL+
Sbjct: 1141 ICDICGLM 1148


>gi|68131848|gb|AAY85202.1| RNA polymerase II second largest subunit [Dianthus caryophyllus]
          Length = 674

 Score = 1353 bits (3502), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/674 (95%), Positives = 659/674 (97%)

Query: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
            GRR EDDRDHYGNKRLDLAGPLLGGLFR LFRKLTRDVRAYVQK VD GKD+NL FAIKA
Sbjct: 1    GRREEDDRDHYGNKRLDLAGPLLGGLFRQLFRKLTRDVRAYVQKNVDQGKDLNLTFAIKA 60

Query: 445  KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
            KTITSGLKYSLATGNWG ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP
Sbjct: 61   KTITSGLKYSLATGNWGAANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 120

Query: 505  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 564
            RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW TENFEEISP
Sbjct: 121  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISP 180

Query: 565  AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYG 624
            AVIPQATKIFVNG WVGIHRDP++LVKTLR LRRRVDVNTEVGVVRDIRLKELRIYTDYG
Sbjct: 181  AVIPQATKIFVNGGWVGIHRDPDLLVKTLRELRRRVDVNTEVGVVRDIRLKELRIYTDYG 240

Query: 625  RCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 684
            RCSRPLFIVEKQRLLIKK+DI ALQQRE+PEDGGWHDLVAKGFIEYIDTEEEETTMISMT
Sbjct: 241  RCSRPLFIVEKQRLLIKKKDIRALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 300

Query: 685  INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
            INDLV ARL+PEE+Y+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 301  INDLVSARLNPEESYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 360

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV
Sbjct: 361  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 420

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA
Sbjct: 421  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 480

Query: 865  PPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 924
            PPGTRVSGEDVIIGKTTP+S +EAQG A+RY+R+DHSISLRHSE+G+VDQVLLTTNADGL
Sbjct: 481  PPGTRVSGEDVIIGKTTPLSPEEAQGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGL 540

Query: 925  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 984
            RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM
Sbjct: 541  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 600

Query: 985  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            TIGQLIECIMGKVAAH+GKEGDATPFTDVTVDNISKAL KCGYQMRGFETMYNGHTGR+L
Sbjct: 601  TIGQLIECIMGKVAAHVGKEGDATPFTDVTVDNISKALQKCGYQMRGFETMYNGHTGRKL 660

Query: 1045 TAMIFLGPTYYQRL 1058
            +AMIFLGPTYYQRL
Sbjct: 661  SAMIFLGPTYYQRL 674


>gi|71028664|ref|XP_763975.1| DNA-directed RNA polymerase II subunit [Theileria parva strain
            Muguga]
 gi|68350929|gb|EAN31692.1| DNA-directed RNA polymerase II subunit, putative [Theileria parva]
          Length = 1190

 Score = 1351 bits (3496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1183 (54%), Positives = 851/1183 (71%), Gaps = 36/1183 (3%)

Query: 5    DYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
            D D +  H Q  +  +E  T+ED W VI ++F E GLV QQ++SF++FI   MQEI+D  
Sbjct: 38   DIDQDLDHSQYLKAVDENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDAH 97

Query: 65   ADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 124
              IEI P+  + P ++ +    +Y++ FGQ+ L+KP + E DG    ++P+ ARLRNLTY
Sbjct: 98   PPIEITPQPNYRPEEEEE-NSILYRLKFGQLSLNKPSVEEKDGVFKHIWPQEARLRNLTY 156

Query: 125  SAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE 184
            ++ +Y+D+ +      +     T++  + +V + ++P+M +SSYC     +++DL+++GE
Sbjct: 157  ASQVYIDIEQETFVNENGKLVQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDRDLSDIGE 216

Query: 185  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTM 244
            C +DQGGYF++NG E+VLIAQE+M+ N VYVF K+  +KY+ VA++RS      +P    
Sbjct: 217  CVFDQGGYFVVNGGERVLIAQERMANNFVYVFNKKN-SKYSAVAQLRS------QPDFIQ 269

Query: 245  FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQM 304
             V  L+   +    +   + A LPYIR++IP+ I+FRALG ++D+DIL+ I YDF DTQM
Sbjct: 270  GVTSLTIMISNSQLTKNKMVAVLPYIRSDIPVPILFRALGCISDRDILQRIVYDFSDTQM 329

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            + L+R SLEE               KRG TVG   ++R+ +AKE L++  LPHVGT    
Sbjct: 330  LSLMRASLEEC--------------KRGPTVGALHEERLNFAKETLRRHFLPHVGTEVGS 375

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E+KK +Y GY+IHRLLL  LGR  EDDR+H+G KRLDLAG L+   F  LFRKL +DV  
Sbjct: 376  ESKKCFYLGYMIHRLLLNQLGRINEDDREHFGKKRLDLAGSLMASSFGTLFRKLAKDVER 435

Query: 425  YVQKCVDNGKDVNLQFAIKAKT-ITSGLKYSLATGNWGQ-ANAAGTRAGVSQVLNRLTYA 482
            +++  +D+G+  ++  AIK+ + IT GL+Y L TGNWG+  +    R GVSQVLNRLT+A
Sbjct: 436  FLKNQIDSGRSFDVAGAIKSCSQITQGLQYQLLTGNWGRDKDGNVVRTGVSQVLNRLTFA 495

Query: 483  STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 542
            S LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI+VGS
Sbjct: 496  SYLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGS 555

Query: 543  AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV 602
             +  IL+FL E+G ++ +EISP +I    KIF+NG WVG+   P+ LV  L  LRR+ ++
Sbjct: 556  LSSTILDFLLEFGMDSLDEISPILIKDRVKIFLNGTWVGVFNQPDSLVNVLLELRRKGNI 615

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDL 662
            ++E  +VRDI   E++I+TD GR  RPL+IVE  RLLI K+    ++ R+      W  L
Sbjct: 616  SSETSIVRDIMSNEIKIFTDAGRSMRPLYIVENNRLLITKKHADMIENRQLT----WSGL 671

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
            +  G +EYID EEEE  MI+M  +DLV         Y ++YTHCEIHPS+ILGVCASIIP
Sbjct: 672  LETGVVEYIDCEEEEICMIAMFPDDLVN-----NNNYCNSYTHCEIHPSMILGVCASIIP 726

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPD NQSPRNTYQSAMGKQAMG+Y TNY  RMDTL++VLYYPQKPLV TR+ME L FR+L
Sbjct: 727  FPDQNQSPRNTYQSAMGKQAMGVYSTNYNLRMDTLSHVLYYPQKPLVCTRSMEFLRFREL 786

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAGIN+IVAI CY+GYNQEDS+IMNQSSIDRG FRS+F R+Y  EEK +G+ V E F +P
Sbjct: 787  PAGINSIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKP 846

Query: 843  DRS-NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ--ASRYTRRD 899
              S N + ++ G Y KLD+DGL  PG+RV G+D+IIG+++P+  D    Q  +    R D
Sbjct: 847  TASGNFLNLKRGDYSKLDNDGLVEPGSRVLGDDIIIGRSSPVEADPNNPQYTSEMNLRMD 906

Query: 900  HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 959
             S  LR +E G+VD VLLT N  G +F KV+VRS+R+PQIGDKF+SRHGQKGT+GMT+  
Sbjct: 907  CSCCLRPNENGVVDNVLLTVNNKGCKFTKVKVRSIRVPQIGDKFASRHGQKGTIGMTFRM 966

Query: 960  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 1019
            ED+P+T +GI PDII+NPHA+PSRMTIG LIEC++GKV + +G EGDATPF+ +T+D IS
Sbjct: 967  EDLPFTCDGIVPDIIMNPHAVPSRMTIGHLIECLLGKVGSLVGMEGDATPFSKMTLDQIS 1026

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
              L KC Y   G E  +NG TG  + + IF+GPTYYQRLKHMV+DKIH+R RGPV +LTR
Sbjct: 1027 NRLFKCRYSRYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVTMLTR 1086

Query: 1080 QPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKK 1139
            QP EGRSR+GGLRFGEMERDCMI+HGA+  LKERLFDQSDAYRVHVC  CGL+++ANL  
Sbjct: 1087 QPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNFCGLLSVANLNN 1146

Query: 1140 NSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
            +SF+C  C NKT I QV IPYACKLL QELMAMAI P+++  E
Sbjct: 1147 SSFQCTACDNKTQISQVTIPYACKLLLQELMAMAIYPKLILTE 1189


>gi|84996571|ref|XP_953007.1| DNA-directed RNA polymerase II subunit [Theileria annulata strain
            Ankara]
 gi|65304003|emb|CAI76382.1| DNA-directed RNA polymerase II subunit, putative [Theileria annulata]
          Length = 1223

 Score = 1350 bits (3494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 655/1205 (54%), Positives = 859/1205 (71%), Gaps = 45/1205 (3%)

Query: 2    MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
            +E D D    H Q  + ++E  T+ED W VI ++F E GLV QQ++SF++FI   MQEI+
Sbjct: 39   IEQDLD----HSQYLKRDDENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEII 94

Query: 62   DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
            D    IEI P+  + P ++ +    +YK+ FGQ+ LSKP + E DG    ++P+ ARLRN
Sbjct: 95   DSHPPIEITPQPNYRPEEEVE-NSVVYKLKFGQLSLSKPSVEEKDGVFKHIWPQEARLRN 153

Query: 122  LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 181
            LTY++ +Y+D+ +            T++  + +V + ++P+M +SSYC     +++DL++
Sbjct: 154  LTYASQVYIDIEQETYINEDGKLTQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDQDLSD 213

Query: 182  LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP 241
            +GEC +DQGGYF++NG E+VLIAQE+M+ N VYVF K+  +KY+ VA++RS      +P 
Sbjct: 214  IGECVFDQGGYFVVNGGERVLIAQERMANNFVYVFNKKN-SKYSAVAQLRS------QPD 266

Query: 242  STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
                V  L+   +    +   + A LPYIR++IP+ I+FRALG ++D+DIL+ I YDF D
Sbjct: 267  FIQGVTSLTIMISNSQLTKNKMVAVLPYIRSDIPVPILFRALGCISDRDILQRIVYDFSD 326

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
            TQM+ L+R SLEE     +Q+  LD+IGKRG TVG  +++R+ +AKE L++  LPHVGT 
Sbjct: 327  TQMLSLMRSSLEECSEYTSQEQCLDFIGKRGPTVGALQEERLNFAKETLRRHFLPHVGTE 386

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
               E+KK +Y GY+IHRLLL  LGR  EDDR+H+G KRLDLAG L+   F  LFRKL +D
Sbjct: 387  VGSESKKCFYLGYMIHRLLLNQLGRINEDDREHFGKKRLDLAGSLMASSFGTLFRKLAKD 446

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKT-ITSGLKYSLATG-------------------NWG 461
            V  +++  +D+G+  ++  AIK+ + IT GL+Y L TG                   NWG
Sbjct: 447  VERFLKNQIDSGRSFDVAGAIKSCSQITQGLQYQLLTGTHSKIIKIKFILLKKFTIWNWG 506

Query: 462  Q-ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 520
            +  +    R GVSQVLNRLT+AS LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CPAET
Sbjct: 507  RDKDGNVVRTGVSQVLNRLTFASYLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAET 566

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQA GLVKNLALM YI+VGS +  IL+FL E+G ++ +EISP +I    KIF+NG WV
Sbjct: 567  PEGQAVGLVKNLALMCYISVGSLSSTILDFLLEFGMDSLDEISPILIKDRVKIFLNGTWV 626

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 640
            G+   P+ LV  L  LRR+ ++++E  +VRDI   E++I+TD GR  RPL+IVE  RLLI
Sbjct: 627  GVFNQPDSLVNVLLELRRKGNISSETSIVRDIMSNEIKIFTDSGRSMRPLYIVENNRLLI 686

Query: 641  KKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYA 700
             KR    ++  +      W  L+  G +EYID EEEE  MI+M  +DLV         Y 
Sbjct: 687  TKRHANMIENNQLT----WSGLMETGVVEYIDCEEEEICMIAMFPDDLVN-----NNNYC 737

Query: 701  DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYV 760
            ++YTHCEIHPS+ILGVCASIIPFPD NQSPRNTYQSAMGKQAMG+Y TNY  RMDTL++V
Sbjct: 738  NSYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMGKQAMGVYSTNYNLRMDTLSHV 797

Query: 761  LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF 820
            LYYPQKPLV TR+ME L FR+LPAGIN+IVAI CY+GYNQEDS+IMNQSSIDRG FRS+F
Sbjct: 798  LYYPQKPLVCTRSMEFLRFRELPAGINSIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVF 857

Query: 821  FRSYRDEEKKMGTLVKEDFGRPDRSNT-MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
             R+Y  EEK +G+ V E F +P  +   + ++ G Y KLD+DGL  PG+RV G+D+IIG+
Sbjct: 858  NRTYSSEEKYLGSTVIESFTKPTSTGKFLNLKRGDYSKLDNDGLIEPGSRVLGDDIIIGR 917

Query: 880  TTPISQDEAQGQAS--RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            ++P+  D    Q +     R D S  LR +E G+VD VLLT N  G +F KV+VRS+R+P
Sbjct: 918  SSPVESDPNNPQYTPEMNLRMDCSCCLRPNENGVVDNVLLTVNNKGCKFTKVKVRSIRVP 977

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKF+SRHGQKGT+GMT+  ED+P+T +GI PDII+NPHA+PSRMTIG LIEC++GKV
Sbjct: 978  QIGDKFASRHGQKGTIGMTFRMEDLPFTCDGIVPDIIMNPHAVPSRMTIGHLIECLLGKV 1037

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
             + +G EGDATPF+ +T++ IS  L KC Y   G E  +NG TG  + + IF+GPTYYQR
Sbjct: 1038 GSLVGMEGDATPFSKMTLEQISNRLFKCRYSRYGNEAFHNGFTGNLMASKIFVGPTYYQR 1097

Query: 1058 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 1117
            LKHMV+DKIH+R RGPV +LTRQP EGRSR+GGLRFGEMERDCMI+HGA+  LKERLFDQ
Sbjct: 1098 LKHMVEDKIHARARGPVTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQ 1157

Query: 1118 SDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPR 1177
            SDAYRVHVC  CGL+++ANL  +SF+C  C NKT I QV IPYACKLL QELMAMAI P+
Sbjct: 1158 SDAYRVHVCNFCGLLSVANLNNSSFQCTACDNKTQISQVTIPYACKLLLQELMAMAIYPK 1217

Query: 1178 MLTKE 1182
            ++  E
Sbjct: 1218 LILTE 1222


>gi|401884833|gb|EJT48974.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii var.
            asahii CBS 2479]
          Length = 1732

 Score = 1345 bits (3482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 669/1152 (58%), Positives = 836/1152 (72%), Gaps = 83/1152 (7%)

Query: 5    DYDY-EEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            DY Y EEQ+ +    EEE I+QED W VI+++F+EKGLVRQQL+SF+EF++NTMQE+VDE
Sbjct: 12   DYQYDEEQNGENGVGEEEPISQEDYWKVINSFFDEKGLVRQQLESFNEFVENTMQELVDE 71

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
            +  + +   +QH  G   D     Y+I+FGQIYL+K  MTE DG+T  LFP+ ARLRNLT
Sbjct: 72   NQRLTLDQHTQHT-GVMGDETRR-YEITFGQIYLAKVAMTEMDGQTVGLFPQEARLRNLT 129

Query: 124  YSAPLYVDVTKRVIKKGH-------------DGEEVTETQDFTKVFIGKVPIMLRSSYCT 170
            Y+APLYVD+ K  +  G              D   V +  +  K++IGKVP+M+RS++C 
Sbjct: 130  YAAPLYVDMKKSTLSAGDVDDPIEADWKPAVDANGVMQGAEEDKIWIGKVPVMVRSNFCL 189

Query: 171  LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 230
            L+   +     L ECPYDQGGYFIINGSEKVLIAQE+M+ N VYVFKK  P+   Y++EV
Sbjct: 190  LHGLPDDHFYALNECPYDQGGYFIINGSEKVLIAQERMAANTVYVFKKADPSPVIYLSEV 249

Query: 231  RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
             S  E   + PS   V+M  R   K  ++G  IR  LPY +T+IPI+IVFRALG V D+D
Sbjct: 250  TSQMEKGGKTPSKTVVKMYLRAQDKA-TTGSVIRVQLPYTKTDIPIVIVFRALGIVPDRD 308

Query: 291  ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            +L HIC++  DT M+E+LRP +EEAF IQ++  ALD+IG+RG     TR  R        
Sbjct: 309  VLSHICFNPNDTAMLEMLRPCIEEAFSIQDRDTALDFIGRRGQQEKGTRASR-------- 360

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
                             KA++ GY+IHRL   ALGRR  DDRDH+G KRLDLAGPLL  L
Sbjct: 361  -----------------KAFFLGYMIHRLCSAALGRRELDDRDHFGKKRLDLAGPLLANL 403

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FR+LF+KLTRDV  ++QKCV+  K+  L  AIK   IT+GLKYSLATGNWG QA A   R
Sbjct: 404  FRILFKKLTRDVYRHLQKCVETHKEFTLVNAIKPGIITNGLKYSLATGNWGDQAKAMQAR 463

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLV
Sbjct: 464  AGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLICPAETPEGQACGLV 523

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNLALM YI+VGS + P++EFLEEWG E  +E   A  P ATK+FVNG W+GIHRD   L
Sbjct: 524  KNLALMSYISVGSYSAPVMEFLEEWGLEPQDEYGSA--PNATKVFVNGVWMGIHRDAVKL 581

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIA 647
             + L  +RR   +  EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L +K+  I  
Sbjct: 582  HENLLEMRRGGQLKHEVSIVRDIRERELRLYTDAGRVCRPLFIVDRPTQTLRLKREHIDR 641

Query: 648  LQQ-----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH--PEE--- 697
            L+       E+ +   W +L+ +G IEY+D EEEET +I+MT  DL  AR++  P+E   
Sbjct: 642  LENIADGLEEAVDGSAWDELLYQGVIEYVDAEEEETILIAMTSEDLENARMYESPQEVAR 701

Query: 698  -------------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 738
                               +++  YTH EIHPS+ILGVCASI+PFPDHNQSPRNTYQSAM
Sbjct: 702  AQAAHTLEAFDPTARVKSSSWSQNYTHMEIHPSMILGVCASIVPFPDHNQSPRNTYQSAM 761

Query: 739  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 798
            GKQAMGI++TNYQ RMDT+A +LYYPQ PL TT++M++L F  LPAG NAIVAI CYSGY
Sbjct: 762  GKQAMGIHLTNYQLRMDTMANILYYPQSPLATTQSMKYLKFSDLPAGQNAIVAILCYSGY 821

Query: 799  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---Y 855
            NQEDSVIMNQSSIDRG FRSL++R+Y D EK +G    E F +PDR+ T+ M+HGS   Y
Sbjct: 822  NQEDSVIMNQSSIDRGLFRSLYYRAYTDTEKMVGMQKVESFEKPDRNETLRMKHGSSDRY 881

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVD 913
             KLD+DGL  P T V+G+D+IIGKT PI  D E  GQ ++ +T+RD S  ++ +E G+VD
Sbjct: 882  AKLDNDGLITPATNVNGDDIIIGKTAPIPPDSEELGQRSATHTKRDVSTPMKSTEQGVVD 941

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QV++TTNADGL+FVK+R+RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI
Sbjct: 942  QVMITTNADGLKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDI 1001

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            I+NPHAIPSRMTIG L+EC++ K+A   G+EGDATPFT++TV+++SK L + GYQ RG E
Sbjct: 1002 IINPHAIPSRMTIGHLVECLLSKLATLTGREGDATPFTELTVESVSKLLRQRGYQSRGLE 1061

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
             MY+GHTG++L A ++ GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRF
Sbjct: 1062 VMYHGHTGKKLRAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRF 1121

Query: 1094 GEMERDCMIAHG 1105
            GEMERDC+  HG
Sbjct: 1122 GEMERDCL--HG 1131



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 66/85 (77%)

Query: 1099 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 1158
            +CMI+HG + FLKER+++ SDA+R+HVC+ CGL+A+ANLKK  F C  C+N T I Q++I
Sbjct: 1646 NCMISHGIAGFLKERMYESSDAFRLHVCDQCGLMAVANLKKQEFHCSVCRNSTQISQIYI 1705

Query: 1159 PYACKLLFQELMAMAIAPRMLTKED 1183
            PYA KLLFQEL AM +  RM + ED
Sbjct: 1706 PYAAKLLFQELQAMNVTVRMYSDED 1730


>gi|167519879|ref|XP_001744279.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777365|gb|EDQ90982.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1166

 Score = 1343 bits (3475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/1172 (56%), Positives = 842/1172 (71%), Gaps = 34/1172 (2%)

Query: 26   EDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 85
            E  W VI+AYF EKGLVRQQLDSFD FI  T+Q+I+  S  IE++   Q+   +  +  +
Sbjct: 11   EACWEVINAYFREKGLVRQQLDSFDHFITYTVQKIIKNSPPIEVQGRLQYLSNEIEEPPK 70

Query: 86   TIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE 145
              + ISFGQ   + P   E DG    +FP   RLRNLTY + +  ++T  V +K  +  E
Sbjct: 71   --HTISFGQAGFALPQHKEEDGNYDHVFPNDCRLRNLTYQSLMQCEITHTVEQKNPETGE 128

Query: 146  VTETQDFTKVFIGKVPIMLRSSYCTLYQ-NSEKDLTELGECPYDQGGYFIINGSEKVLIA 204
            VT T       +GKVP+MLRS YCTL +  + +D  ++ ECP D GGYFIINGSEKVLIA
Sbjct: 129  VTTT----PALLGKVPMMLRSKYCTLNKMETFRDFYDINECPLDPGGYFIINGSEKVLIA 184

Query: 205  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGGSS-GQ 261
            QEKM+ N VYVF+K+  +K+ +V E+RS+ E  NRP STM V+ML   S   KG ++ G+
Sbjct: 185  QEKMAGNTVYVFEKKD-SKHMFVTEMRSIVEDSNRPTSTMMVKMLRGGSGGTKGRATFGR 243

Query: 262  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 321
             I A+LPYIR +IP++++FRALGF  D+ ILEHI YDF D +MMELL+PSL+EAFV+Q +
Sbjct: 244  VIHASLPYIRQDIPVVVLFRALGFEDDRSILEHIIYDFDDMEMMELLKPSLDEAFVVQTR 303

Query: 322  QVALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            +VALD IG+R  A VG+++D R+++A++ILQKEMLPH+G G  CE  KA++ GY++HR L
Sbjct: 304  EVALDLIGRRSMAAVGMSKDMRVRFARDILQKEMLPHIGVGPQCEQAKAFFLGYMVHRTL 363

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
              AL RR  DDRDHYGNKRLDLAG L+  LFR LF++LT+ +   V   V+      +  
Sbjct: 364  QAALRRRELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKLTRKVTDLVNRNHKFMVIT 423

Query: 441  AIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 499
             +  + + SGL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRRLNSPI R G
Sbjct: 424  LLDVEILGSGLRYSLATGNWGDQKKAHEARAGVSQVLNRLTFASTLSHLRRLNSPIDRTG 483

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            K+AKPRQLHN+ WG +CPAETPEG A GLVKNL+LM  +TVGS   P+ + L   G +  
Sbjct: 484  KIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLSLMASLTVGSDDTPVHDLLGASGLDYL 543

Query: 560  EEI-SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRR--LRRRVDVNTEVGVVRDIRLKE 616
            + + S + I  ATK+FVNG WVGIH  P+ LV T+R+  L     V +EV + R+IR +E
Sbjct: 544  DRLPSRSAIKTATKVFVNGNWVGIHSHPDELVTTMRQYLLDAAHSVASEVSIFRNIRERE 603

Query: 617  LRIYTDYGRCSRPLFIVEKQ-----RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYI 671
            + I TD GR +RPL IV K      R  +K   ++AL+     +   W  LV +G +EYI
Sbjct: 604  VHIVTDSGRTTRPLLIVNKDDANRCRFALKNSHVMALRN----DQMSWTHLVQRGVVEYI 659

Query: 672  DTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
            D  EEETTMI+M    L       E +Y +TYTHCEIHPS+IL +CASIIPFPDHNQSPR
Sbjct: 660  DVNEEETTMIAMDQGTL------EETSYCNTYTHCEIHPSMILSICASIIPFPDHNQSPR 713

Query: 732  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
            NTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQ+PLV TR+M +L F +LPAGINAIV 
Sbjct: 714  NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQRPLVQTRSMNYLRFAELPAGINAIVG 773

Query: 792  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR-DEEKKMGTLVKEDFGRPDRSNTMGM 850
            I  Y+GYNQEDSVIMN+ S++RG FRS+F+RSY   E  + G ++K D  +P R N +GM
Sbjct: 774  IMTYTGYNQEDSVIMNRYSVERGLFRSVFYRSYAASEHSERGEIIKID--KPSRENCIGM 831

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETG 910
            R  +YDKL+DDG+  PG RVSG+D I+G+   + +   Q    R+ +RD S+ LR SE+G
Sbjct: 832  RRANYDKLEDDGIVAPGIRVSGDDAIVGRLLELPEATRQASGGRFEKRDKSLFLRSSESG 891

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            ++D V+++ N  G +FVK+RVRSVR PQIGDKF+SRHGQKGT GM Y QEDMP+   G+ 
Sbjct: 892  IIDGVMISVNQKGEKFVKIRVRSVRTPQIGDKFASRHGQKGTCGMQYAQEDMPFAASGVV 951

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDIIVNPHAIPSRMTIG LIEC++GK A+H G  GDATPFT V V +++  L    +Q  
Sbjct: 952  PDIIVNPHAIPSRMTIGHLIECLLGKSASHSGTIGDATPFTKVNVTDVADILEGYNFQRY 1011

Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
            G E MYNG TGR++ A +FLGPTYYQRLKHMVDDKIH+R RGP+Q LTRQP EGRSRDGG
Sbjct: 1012 GNEVMYNGFTGRKMQAQVFLGPTYYQRLKHMVDDKIHARARGPLQNLTRQPMEGRSRDGG 1071

Query: 1091 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNK 1150
            LRFGEMERDCMIAHGA+ FL+ERLF+ SD Y +HVC+ CGL  +A L+KN FEC  C+N 
Sbjct: 1072 LRFGEMERDCMIAHGAAQFLRERLFEVSDPYSLHVCDVCGLPCVAKLEKNEFECTRCRNS 1131

Query: 1151 TDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
            T + ++ +PYACKLLFQELM M++ PRM+T +
Sbjct: 1132 TRVSRIRLPYACKLLFQELMTMSVVPRMMTDD 1163


>gi|403224032|dbj|BAM42162.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
          Length = 1189

 Score = 1341 bits (3471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1167 (55%), Positives = 842/1167 (72%), Gaps = 33/1167 (2%)

Query: 19   EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78
            E E  ++ED W VI ++F E GLV QQ++SF++FI   MQEI+D    IEI P+  + P 
Sbjct: 52   EHEGFSEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPAIEITPQPNYRPE 111

Query: 79   QQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
            ++ +    +Y++ FGQ+ L+KP + E DG    ++P+ ARLRNLTY++ +Y+D+ ++   
Sbjct: 112  EEEE-NSVLYRLKFGQLSLNKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQQTFL 170

Query: 139  KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
                    T++  + +V + ++P+ML+S+YC     +E DL+++GEC +DQGGYF++NG 
Sbjct: 171  NEEGNLVQTDSTVYPRVPLCRIPMMLKSAYCWTKGLTEHDLSDIGECVFDQGGYFVVNGG 230

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            E+VLIAQE+M+ N VYVF K+   KY+ VA++RS  +  ++  ++  + +L+   AK   
Sbjct: 231  ERVLIAQERMANNFVYVFNKKN-QKYSAVAQLRSQPDF-SQGVTSFSIMILNSQLAKNK- 287

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
                + A LPY++ ++P+ I+FRALG ++D+DIL+ I YDF DTQM+ L+R +LEE    
Sbjct: 288  ----MLAALPYVKGDVPVPILFRALGCISDRDILQRIVYDFSDTQMLSLMRSTLEECSEY 343

Query: 319  QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
             +Q+  LDYIGKRG TVG   + RI+YAK++L++  LPHVGT    E+KK +Y GY+IHR
Sbjct: 344  TSQEQCLDYIGKRGPTVGAPLEARIQYAKDLLRRHFLPHVGTEVGSESKKCFYVGYMIHR 403

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LLL  LGR  EDDR+H+G KRLDLAG L+   F  LFRKL +DV+  +Q  +D+G+  ++
Sbjct: 404  LLLNQLGRINEDDREHFGKKRLDLAGALMASSFGALFRKLAKDVKKLLQNQIDSGRSFDV 463

Query: 439  QFAIKAKT-ITSGLKYSLATGNWGQANAAGT-RAGVSQVLNRLTYASTLSHLRRLNSPIG 496
              AIK+ + IT GL+Y L TGNWG+       R GVSQVLNRLT+AS LSHLRRLN+P+G
Sbjct: 464  AGAIKSCSQITQGLQYQLLTGNWGRDKEGNVVRTGVSQVLNRLTFASYLSHLRRLNTPLG 523

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            REGK+AKPRQLHN+ WGM+CPAETPEGQA GLVKNLALM YI+VGS    IL+FL E+G 
Sbjct: 524  REGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSMTSTILDFLLEFGM 583

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            ++ +EISP +I    KIF+NG W+G+   P+ LV  L  LRR+ ++++E  +VRDI   E
Sbjct: 584  DSLDEISPVLIKDRVKIFLNGTWIGVFNQPDALVNLLLELRRKGNISSETSIVRDILSNE 643

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEE 676
            ++I+TD GR  RPL+IVE  RLLI KR  + ++  +      W  L+  G +EYID EEE
Sbjct: 644  IKIFTDSGRSMRPLYIVENNRLLITKRHALMIENNQL----NWSGLLESGVVEYIDCEEE 699

Query: 677  ETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
            E  MI+M  +DL+         Y ++YTHCEIHPS+ILGVCASIIPFPD NQSPRNTYQS
Sbjct: 700  EICMIAMFPDDLIN-----NNNYCNSYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQS 754

Query: 737  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
            AMGKQAMG+Y TNY  RMDTL++VLYYPQKPLV TR+ME L FR+LPAGIN+IVAI CY+
Sbjct: 755  AMGKQAMGVYSTNYNLRMDTLSHVLYYPQKPLVCTRSMEFLRFRELPAGINSIVAIMCYT 814

Query: 797  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD-RSNTMGMRHGSY 855
            GYNQEDS+IMNQSSIDRG FRS+F R+Y  EEK +G+ V E F +P   SN + ++ G Y
Sbjct: 815  GYNQEDSLIMNQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKPTATSNFLNLKRGDY 874

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
             KLD+DGL  PG+R          + P   +     A    R D S  LR +E G+VD V
Sbjct: 875  SKLDNDGLIEPGSR----------SDP---NNPNYPAEMNLRMDCSCCLRPNENGVVDNV 921

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            LLT N  G +F KV+VRSVR+PQIGDKF+SRHGQKGT+GMT+  ED+P+T EGI PDII+
Sbjct: 922  LLTVNNKGCKFTKVKVRSVRVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCEGIVPDIIM 981

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035
            NPHA+PSRMTIG LIEC++GKV A +G EGDATPF+ +T++ IS  L KC Y   G E  
Sbjct: 982  NPHAVPSRMTIGHLIECLLGKVGALVGMEGDATPFSKMTLEQISSRLFKCHYSKYGNEAF 1041

Query: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 1095
            +NG TG  + + IF+GPTYYQRLKHMV+DKIH+R RGPV +LTRQP EGRSRDGGLRFGE
Sbjct: 1042 HNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSRDGGLRFGE 1101

Query: 1096 MERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQ 1155
            MERDCMI+HGA+  LKERLFDQSDAYRVHVC  CGL++IANL  +SF+C  C NKT I Q
Sbjct: 1102 MERDCMISHGAAKMLKERLFDQSDAYRVHVCNLCGLLSIANLNNSSFQCTACDNKTQISQ 1161

Query: 1156 VHIPYACKLLFQELMAMAIAPRMLTKE 1182
            V IPYACKLL QELMAMAI P+++  E
Sbjct: 1162 VTIPYACKLLLQELMAMAIYPKLVLTE 1188


>gi|367479107|gb|AEX16088.1| RPB2 [Mucor circinelloides f. lusitanicus]
          Length = 931

 Score = 1340 bits (3467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/932 (67%), Positives = 756/932 (81%), Gaps = 25/932 (2%)

Query: 190  GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 249
            GGYF+INGSEKVLIAQE+M+TN VYVF K  P+ + Y AE+RS  E  ++  S +F++M+
Sbjct: 2    GGYFVINGSEKVLIAQERMATNTVYVFSKAPPSNFQYTAEIRSQPEKGSKNASPLFIKMM 61

Query: 250  SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 309
              TS +G SSGQ IRA LPYIR+E+PI+IVFRALG VAD+D+LEHICYD  D +M+ELL+
Sbjct: 62   RATSERG-SSGQCIRAALPYIRSEVPIVIVFRALGQVADRDVLEHICYDRNDYEMLELLK 120

Query: 310  PSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKA 369
            PS+EE+FVIQ+Q VALDYIGKRG TVG T+DKRIKYA EILQKE+LPHVGT    ET+K+
Sbjct: 121  PSIEESFVIQDQDVALDYIGKRGTTVGATKDKRIKYASEILQKELLPHVGTAYKTETRKS 180

Query: 370  YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC 429
            Y+FGY+IHRLLL AL RR  DDRDHYG KR+DLAGPL+  LFR+LF+KLT+DV  Y+QKC
Sbjct: 181  YFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMASLFRLLFKKLTKDVAKYLQKC 240

Query: 430  VDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHL 488
            +++ ++ NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGVSQVLNR TY STLSHL
Sbjct: 241  IESSREFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTYTSTLSHL 300

Query: 489  RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
            RR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YI+VGS+A P++
Sbjct: 301  RRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSSATPLI 360

Query: 549  EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV 608
             FLEEW  EN EE+S   I  ATK+FVNG W+GIHRDP  L+ +L+++RR VD++ EV +
Sbjct: 361  MFLEEWAMENLEELSATSIADATKVFVNGVWIGIHRDPGELINSLKQMRRSVDISPEVSI 420

Query: 609  VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFI 668
            VRDIR KELR+YTD GRC RPLF+VE Q+L + +  ++ +Q  E  +D GW +++A G +
Sbjct: 421  VRDIREKELRMYTDAGRCCRPLFLVENQQLKLTRDHVLRIQDTE--DDYGWQNMIADGIV 478

Query: 669  EYIDTEEEETTMISMTINDLVQARLHPE-------------------EAYADTYTHCEIH 709
            EY+D +EEET MI MT  DL ++R+  E                    +Y+ T+THCEIH
Sbjct: 479  EYVDADEEETAMICMTPEDLAESRMTAEYGAPLQETRDLFSRVKSQTGSYSHTWTHCEIH 538

Query: 710  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
            PS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q RMDTLA +LYYPQKPL 
Sbjct: 539  PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQTRMDTLANILYYPQKPLT 598

Query: 770  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 829
            TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D EK
Sbjct: 599  TTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDAEK 658

Query: 830  KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EA 888
            K G +  E+F +P R  T+ ++HG+Y+KL++DGL  PGTRVSG+D+IIGKT PI  D E 
Sbjct: 659  KAGMMFMEEFEKPTRDTTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKTAPIPADSEE 718

Query: 889  QGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
             GQ  + + +RD S  LR +ETG+VDQV+LTTN DGL+FVKVRVRS R+PQ+GDKF+SRH
Sbjct: 719  LGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRH 778

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGT+GMTY QED P++ EGITPD+I+NPHAIPSRMTIG +IEC++GKV+   G EGDA
Sbjct: 779  GQKGTIGMTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIECLLGKVSTLTGNEGDA 838

Query: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            TPFTDVTV+ IS+AL   GYQ RGFE MYNG TGR+L   +FLGPTYYQRLKHMVDDKIH
Sbjct: 839  TPFTDVTVEAISQALQAQGYQSRGFEVMYNGFTGRKLNVQVFLGPTYYQRLKHMVDDKIH 898

Query: 1068 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1099
            SR RGPVQILTRQP EGRSRDGGLRFGEMERD
Sbjct: 899  SRARGPVQILTRQPVEGRSRDGGLRFGEMERD 930


>gi|403336158|gb|EJY67267.1| DNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1239

 Score = 1337 bits (3460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1209 (54%), Positives = 854/1209 (70%), Gaps = 58/1209 (4%)

Query: 19   EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI--RPESQHN 76
            ++ EI Q+DAW VI +YF++ GLV QQ+ SFD F+  ++QEI+ E+  ++I   P+ Q N
Sbjct: 42   DQNEINQDDAWTVIRSYFKQHGLVSQQISSFDRFVNFSLQEIISENGQLQIPYTPQYQLN 101

Query: 77   PGQQSDFAETIYKISFGQIYL-SKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT-- 133
              Q     + +Y++ F Q  + S P + E D   + +FP  AR+RNLTY+  ++VD+T  
Sbjct: 102  KQQHETDKDIVYEVQFKQASVNSYPRLQEEDDTYSPIFPHEARMRNLTYATEVFVDITLS 161

Query: 134  -----KRVIKKGHDGE------EVTETQDFTKVFIGKVPIMLRSSYCTLYQ-NSEKDLTE 181
                 K +I     G+      +V +  D  +V IGK+P+MLRS +C L+  N  + + E
Sbjct: 162  KKELDKEMIIDPKTGQRHQKVKQVMQEYDEARVTIGKIPVMLRSKFCQLHSLNQMQRMKE 221

Query: 182  LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP 241
              +C YDQGGYFIINGSEKV++AQE+M+ N V VF K+ P+KY++VAE+RS AE+ N+PP
Sbjct: 222  GKDCQYDQGGYFIINGSEKVIVAQERMANNQVNVFHKKPPSKYSWVAEIRSQAENSNKPP 281

Query: 242  STMFVRMLSRTSAKG----------GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 291
              + + + SR  + G             GQ I  +LP I+ +IP++I+FRALG ++D+ I
Sbjct: 282  QQLLLFLKSRYKSSGPGFGQANHSTSKFGQSIYVSLPMIKEQIPLVILFRALGTISDRQI 341

Query: 292  LEHICYDF-QDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            L  +C+D   D +M E LR SLEE+ ++  Q+ A+DYI KRG+     R+ R+ Y K +L
Sbjct: 342  LSRVCFDCPDDPEMGEALRASLEESKIVDTQEDAMDYIAKRGSAQPYIRENRLTYTKLML 401

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            + E LPH+ T      KK+++ GY++++LL   LGR  EDDRD+YG KRLD+AG LL   
Sbjct: 402  ESEFLPHISTLPQDMPKKSFFLGYMVNKLLKAFLGRIDEDDRDYYGKKRLDMAGSLLATN 461

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKD-VNLQFAIKAKTITSGLKYSLATGNWGQ-ANAAGT 468
            FR LFR  T  +R  ++  +D+GK+ + LQ +IK   IT GL+ +LATGNWG+  N    
Sbjct: 462  FRQLFRNFTDTMRRILKHEIDSGKEQIVLQNSIKQDIITRGLRTALATGNWGRDKNGDVQ 521

Query: 469  RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 528
            + GV+QVLNRLT+AS+LSHLRRLN+PI + GKLAKPRQLHN+ WGM+CPAETPEG ACGL
Sbjct: 522  KTGVAQVLNRLTFASSLSHLRRLNTPIAKTGKLAKPRQLHNTHWGMICPAETPEGAACGL 581

Query: 529  VKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEM 588
            VKNLALM +++VGS    ++  LE+ G +  ++++     +  +IFVNG W G H +P+ 
Sbjct: 582  VKNLALMTFVSVGSQPSYLISILEDLGVDRLDDMNQVGSGRQVRIFVNGNWFGTHANPDD 641

Query: 589  LVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL 648
            L+K++ +LRR   +  E+ +VRD++ KE+R YTD GR  RPLFIV+   + +KK+ I  L
Sbjct: 642  LIKSMLKLRRTHQIPKEIAIVRDLQNKEIRFYTDSGRVQRPLFIVQNNNIKLKKKHISLL 701

Query: 649  QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEI 708
            ++ E      + D + +G +E++D EEEET MI+M + DL   +    E    TYTHCEI
Sbjct: 702  EKNEY----NFDDTIKEGLVEFLDVEEEETAMIAMHLQDLKSKK----ENRVTTYTHCEI 753

Query: 709  HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 768
            HPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY +N+  RMDTLA+VLYYPQKPL
Sbjct: 754  HPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNHSIRMDTLAHVLYYPQKPL 813

Query: 769  VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE 828
            V T++M+ LHF++LPAG NAIVAIACY+GYNQEDS+I NQSSIDRG FRS FFR+Y + +
Sbjct: 814  VCTKSMDFLHFKELPAGSNAIVAIACYTGYNQEDSIIFNQSSIDRGIFRSAFFRTYSETQ 873

Query: 829  KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE- 887
            +K      E F  PD     G +HG+YDKLD DGL  PG +VSG+DVIIGKTT I  +E 
Sbjct: 874  EK-----DERFEIPDFKKCSGRKHGTYDKLDIDGLINPGNQVSGDDVIIGKTTAIKMNEN 928

Query: 888  -------AQGQASRY---TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
                   +QG    +   +RRD S  L+HSETG +DQV+LT N  G RFVK+++RS RIP
Sbjct: 929  MNGNANSSQGADPMFFVKSRRDVSTCLKHSETGKIDQVVLTVNEQGERFVKIKMRSERIP 988

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKF+SRHGQKGTVGMTY QEDMP+T EGI PD+I+NPHAIPSRMTIG LIEC+  KV
Sbjct: 989  QIGDKFASRHGQKGTVGMTYRQEDMPFTREGIVPDLIINPHAIPSRMTIGHLIECLGSKV 1048

Query: 998  AAHMGKEGDATPFTDV----TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1053
            A+  G EGDATPF  V    TV+ ISK LH+CGYQ+RG E MYNG  G+++  MIFLGPT
Sbjct: 1049 ASLTGTEGDATPFQKVGVKDTVEQISKRLHECGYQLRGNEVMYNGFNGKKMEVMIFLGPT 1108

Query: 1054 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 1113
            YYQRLKHMV DKIHSRGRGP QILTRQP EGRSRDGGLRFGEMERDCMI+HGA+ FLKER
Sbjct: 1109 YYQRLKHMVADKIHSRGRGPTQILTRQPTEGRSRDGGLRFGEMERDCMISHGAARFLKER 1168

Query: 1114 LFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 1173
            LFD SD YR+H+CE CGLI + NL +  FEC  C+N + I QV+IPYACKLL QELMAM 
Sbjct: 1169 LFDVSDFYRIHMCEVCGLICVGNLSEQRFECYNCQNTSKICQVNIPYACKLLMQELMAMQ 1228

Query: 1174 IAPRMLTKE 1182
            IAPR+   E
Sbjct: 1229 IAPRLKVHE 1237


>gi|418204392|gb|AFX61750.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            torchioi]
          Length = 1137

 Score = 1336 bits (3457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1137 (57%), Positives = 821/1137 (72%), Gaps = 73/1137 (6%)

Query: 30   AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYK 89
             VIS++FE KGLV QQLDSFDEFI  TMQE+V+E   + +         +        Y+
Sbjct: 1    TVISSFFETKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPEEDEVDPVVLRRYE 60

Query: 90   ISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK----------- 138
            + FG + L +P MTE DG T+ + P+ ARLRNLTYS+PLY+ +TKR+ +           
Sbjct: 61   LKFGTVMLGRPSMTEGDGATSIMLPQEARLRNLTYSSPLYLSITKRITEGRERLISERDD 120

Query: 139  ------------KGHDGEEVTETQDFT-------KVFIGKVPIMLRSSYCTLYQNSEKDL 179
                        KG       E +           VFIGK+PIML+S YC L   +E+ L
Sbjct: 121  DDQVEDDIDDSGKGRGTYLHWEPKTLADDDPEEENVFIGKMPIMLKSKYCILKDLNEQSL 180

Query: 180  TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNR 239
                ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK  P+   YVAE+RS  E  +R
Sbjct: 181  YNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGSR 240

Query: 240  PPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 299
              S + +++ ++  +  G  G  IR+TLPYIRT+IPI++VFRALG V+D+DIL HICYD 
Sbjct: 241  ILSQLSIKLFAKGDSSKGGFGSTIRSTLPYIRTDIPIVVVFRALGVVSDEDILNHICYDR 300

Query: 300  QDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGVTRDKRIKYAKEILQKEMLPHV 358
             DT M+E+L+P +EE FVIQ+++VALD+I KRG +   +  +KR++YA+EI+QKE LPH+
Sbjct: 301  NDTPMLEMLKPCIEEGFVIQDREVALDFISKRGTSPTTMNHEKRVRYAREIIQKEFLPHI 360

Query: 359  GTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 418
               +  ET+KA++ GY++HRLL CALGRR  DDRDH+G KRLDLAGPLL GLFR LF +L
Sbjct: 361  SQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAGLFRTLFMRL 420

Query: 419  TRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLN 477
            T+D+  YVQ+CV+  + + L   +KA T++ GLKY+LATGNWG Q  AA ++AGVSQVLN
Sbjct: 421  TKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASSKAGVSQVLN 480

Query: 478  RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 537
            R TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM  
Sbjct: 481  RYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCS 540

Query: 538  ITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLR 597
            ITVG+ + PI++F+ +   E  EE  P V P ATK+FVNG WVG+HRDP  LV T++ LR
Sbjct: 541  ITVGTPSEPIIDFMIQRNMEVLEEYEPQVSPNATKVFVNGVWVGVHRDPAHLVSTVQSLR 600

Query: 598  RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQ- 649
            RR  ++ EV +VRDIR +E +I+TD GR  RPLF+V+          L + K  I  L+ 
Sbjct: 601  RRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVDNDPKSENCGSLALTKEHIHKLEA 660

Query: 650  QRESPED----------GGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLH 694
             +E P D           GW  LV  G IEY+D EEEET MI MT  DL     + A + 
Sbjct: 661  DKELPPDLDPEERRERYFGWDGLVKSGVIEYVDAEEEETIMIVMTPEDLETSKQIAAGMM 720

Query: 695  PEE--AYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 738
            PEE  A+AD              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAM
Sbjct: 721  PEEYDAHADPNRRVRSQLTQKAHTFTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM 780

Query: 739  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 798
            GKQAMG+++TN+  RM+T+A ++YYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGY
Sbjct: 781  GKQAMGVFLTNFDQRMETMANIIYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGY 840

Query: 799  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 858
            NQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+YDKL
Sbjct: 841  NQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPLRSDTLRMKHGTYDKL 900

Query: 859  DDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR-YTRRDHSISLRHSETGMVDQVL 916
            D DG+  PG RVSGED+IIGKT P++ + E QG  ++ +T+ D S  LR +E G+VDQVL
Sbjct: 901  DHDGIVCPGVRVSGEDIIIGKTAPLAPESEEQGMRTKSHTKLDVSTPLRSTENGIVDQVL 960

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            L+T+ D L+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+N
Sbjct: 961  LSTSNDDLKFVKVRMRATKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIIN 1020

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1036
            PHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD++S  L + GYQ RGFE MY
Sbjct: 1021 PHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSVSGLLREHGYQSRGFEVMY 1080

Query: 1037 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            NGHTGR+L A +FLGPTYYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRF
Sbjct: 1081 NGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 1137


>gi|378729989|gb|EHY56448.1| DNA-directed RNA polymerase II subunit RPB2 [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1263

 Score = 1333 bits (3451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 671/1234 (54%), Positives = 854/1234 (69%), Gaps = 75/1234 (6%)

Query: 20   EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
            + +IT ED W VIS++F+ K L   Q+DSF+ F+++ +Q++V+E   + +      +   
Sbjct: 31   DTDITSEDCWKVISSFFDIKKLASMQIDSFNHFMRSGLQDLVNEKGGVTLDHAQNVDEDD 90

Query: 80   QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV--- 136
             +      +++ FG++ LSKP M E DG TA   P  ARLR+LTY++P +V +T+R    
Sbjct: 91   PNPVVIKRHEVKFGKVTLSKPNMVEGDGVTADCMPHEARLRSLTYASPAFVKMTRRTYYA 150

Query: 137  ---------IKKG---HDGEEV-----TETQDF---TKVFIGKVPIMLRSSYCTLYQN-- 174
                     + +G    DG ++     TE  DF    +V+IGK+PIM+RS  C L  +  
Sbjct: 151  KEKPWDDAGVDEGVMREDGSQLYWREGTEEGDFDSEKEVYIGKIPIMVRSMTCHLMSDRF 210

Query: 175  -SEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233
              E+DL   GECPYDQGGYFIINGSEKVLIAQE+ + N V VF+K  P  + ++AE+RS+
Sbjct: 211  QDERDLYAWGECPYDQGGYFIINGSEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSV 270

Query: 234  AESQNRPPSTMFVRMLSRTSAKGGSS-GQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 292
             +   R  S   V++  R     G+     IR  LPY++ +IP++IVFRAL  V+D DIL
Sbjct: 271  IDRGARMMSQCTVKLFRRVDGPEGTKIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADIL 330

Query: 293  EHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQK 352
            E IC+D  D +MM++L  SL+E   IQ   +A D+I +RG    +   +R K+A +ILQK
Sbjct: 331  EKICFDQSDKEMMDMLMGSLQEGQPIQGADLARDFIARRGNVPTLKSHERQKHATDILQK 390

Query: 353  EMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 412
            E LPH+G G     +KA++ GY++HRLL CALGR   DDRDH G KRLDLAGPL+  LFR
Sbjct: 391  EFLPHIGQGPDATARKAFFLGYMVHRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFR 450

Query: 413  MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAG 471
            + F K  +D   Y+QK V+ G+ +N+    K   ITSGLKYSLATGNWG Q      +AG
Sbjct: 451  LQFDKAAKDFYRYMQKRVEAGQPINIMAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAG 510

Query: 472  VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 531
            VSQVL+R T++STLSHLRR N+PIGREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKN
Sbjct: 511  VSQVLSRYTFSSTLSHLRRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKN 570

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG-IHRDPEMLV 590
            L+LM  +T      P++ ++     E  E+  P + P+ATK+FV+G W   I RDP+ LV
Sbjct: 571  LSLMSMVTNSYETAPLVNYVLTKNVEALEDWEPRLNPKATKVFVDGVWFAVILRDPKRLV 630

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKR 643
              LR LRRR   +++V +V DIR KE +I  D GR  RPLF+VE  R       L++ K 
Sbjct: 631  DDLRMLRRRGVFDSQVSLVWDIREKEFKISGDSGRIVRPLFVVETDRSSENHGNLVLNKE 690

Query: 644  DIIALQQ------------RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
             I  L +             E  +  GW +L+A G +EY+D EEEET MI MT   L  +
Sbjct: 691  HIRKLDETTYLKENDFQDWNEQVKPFGWTELLASGVVEYLDAEEEETAMICMTPEALSDS 750

Query: 692  R---------------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 730
            R                     L+P   +A T+THCEIHPS+ILGVCASIIPFPDHNQSP
Sbjct: 751  RAKHFGLEIENDDDPLSRNDPLLNP---HAHTFTHCEIHPSMILGVCASIIPFPDHNQSP 807

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMG+++TN+  RM+T++ +LYYPQKPL  T AM++L FR+LPAG NAIV
Sbjct: 808  RNTYQSAMGKQAMGVFLTNFDQRMETMSNILYYPQKPLARTMAMDYLKFRELPAGQNAIV 867

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AIA YSGYNQEDSVIMNQSSIDRG FRSLF+R+Y+D EK +G  V E F +P R++T+ +
Sbjct: 868  AIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDSEKSVGHSVVEQFEKPTRADTLRL 927

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSE 908
            +HG+YDK+D+DG+  PG RVSGED+I+GKT P++ D E  GQ   ++ +RD S  LR +E
Sbjct: 928  KHGTYDKIDEDGIVAPGVRVSGEDIIMGKTAPMAPDAEELGQRLKQHIKRDVSTPLRSTE 987

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
            +G+VDQV+LTT A+G RF KVRVR+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG
Sbjct: 988  SGIVDQVMLTTTAEGHRFAKVRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTREG 1047

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            I PD+I+NPHAIPSRMTI  LIEC + KVA   G EGDATPFT VTV  IS+ L   GYQ
Sbjct: 1048 IVPDLIINPHAIPSRMTIAHLIECQLSKVATLRGDEGDATPFTKVTVTQISELLRNMGYQ 1107

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
             RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIHSR RGP QILTRQP EGR+RD
Sbjct: 1108 SRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARD 1167

Query: 1089 GGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGC 1147
            GGLRFGEMERDCMIAHGAS FLKERLFD SD +RVHVC+ CGL+  IA LKKN+FEC+ C
Sbjct: 1168 GGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHVCDICGLMTVIAKLKKNTFECKNC 1227

Query: 1148 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
             NK  I Q+++PYA KLLFQEL AM IA R+ TK
Sbjct: 1228 NNKNKISQIYLPYAAKLLFQELWAMNIAARLYTK 1261


>gi|403331439|gb|EJY64666.1| DNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1198

 Score = 1328 bits (3438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1190 (54%), Positives = 848/1190 (71%), Gaps = 45/1190 (3%)

Query: 20   EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP-- 77
            ++EI Q+DAWAVI +YF++ GLV QQ+ SF+ F++  +QEIV E     I+ E Q+ P  
Sbjct: 21   KKEIDQDDAWAVIRSYFKQHGLVSQQISSFNRFLEMNVQEIVKEHKHNRIKVEPQYLPSE 80

Query: 78   GQQSDFAETIYKISFGQIYLSK-PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
            G+ S      Y + F Q++++  P + ESD     +FP  AR+RNLTY+  +YVDV  + 
Sbjct: 81   GRDSTQENIYYDVIFEQVHVNNSPRIQESDESYQAVFPHEARIRNLTYATEIYVDVKLQK 140

Query: 137  I------KKG-HDGEE------VTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT-EL 182
            +      K G  DGE+      + E     + F+GKVP+M+RS +C L    + ++    
Sbjct: 141  LQQIPYDKTGLRDGEKREPKFTILEDSKPIQTFLGKVPVMVRSKFCHLRNLQDHEIVRNA 200

Query: 183  GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS 242
             EC YDQGGYF+ING EKV+IAQE+M+ N V VF +R P+KY++VAE+RS AE+ N+PP 
Sbjct: 201  KECLYDQGGYFVINGGEKVIIAQERMANNIVLVFHRRPPSKYSWVAEIRSQAENSNKPPQ 260

Query: 243  TMFVRMLSRTSAKGGSSGQYIR---ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 299
               V +  +        G Y R   AT+P IR  IP+ I+ RALG V+DK I+  ICYD 
Sbjct: 261  QFMVAIQEKIKLGEQGGGNYARTICATIPAIREPIPVAILMRALGCVSDKQIINKICYDP 320

Query: 300  QDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVG 359
            +D++M E L+PSLE+A  +  ++ ALD+I KRG+    +RD RI+YA++IL+ E LPHV 
Sbjct: 321  EDSEMCESLKPSLEQAMTVMTEEDALDFISKRGSGAQYSRDTRIQYAQKILETEFLPHVS 380

Query: 360  TGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 419
                   KK+Y+ GY+++RL+  +LGR +EDDRD+YG KR+D+AG LL GLFR LFR+ T
Sbjct: 381  MNAEGLYKKSYFVGYMVNRLIQASLGRTSEDDRDYYGKKRMDMAGSLLSGLFRQLFRQTT 440

Query: 420  RDVRAYVQKCVDNGKDV-NLQFAIKAKTITSGLKYSLATGNWGQANAAGT-RAGVSQVLN 477
             D+  Y+++ +DNGK + +L  AIK+ TI+ GLK +LATGNWG+       + GV+QVLN
Sbjct: 441  DDMLKYLKRDIDNGKQILSLASAIKSDTISRGLKSALATGNWGKDKQGDVQKTGVAQVLN 500

Query: 478  RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 537
            RLT+AS+LSHLRRLN+P+ + GKL KPRQLHNS WGM+CPAETPEGQACGLVKNL+LM  
Sbjct: 501  RLTFASSLSHLRRLNTPLAKSGKLTKPRQLHNSHWGMVCPAETPEGQACGLVKNLSLMSL 560

Query: 538  ITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVKTLRR 595
            ++VGS    ++E LE++G E+   + P ++   +  K+FVNG W+G HR+   LVK ++ 
Sbjct: 561  VSVGSPNKTLIEILEDFGVEDLTSLDPIILQNKELVKVFVNGNWIGCHRNATDLVKNIKD 620

Query: 596  LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPE 655
            +RR   +  E+ +VRDI  KE++ +TD GR  RPLFIVE   L IKK  I  L       
Sbjct: 621  MRRTYTIPKEISIVRDIYTKEIKFFTDSGRVQRPLFIVENSALRIKKFHIPQLINGSK-- 678

Query: 656  DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILG 715
               + DL+ +G  E++D EEEET MI+MT++DL       ++A    YTHCEIHPS+ILG
Sbjct: 679  --NFEDLLQEGLCEFLDVEEEETVMIAMTLDDL-----KGQKAIEYHYTHCEIHPSMILG 731

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            VCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y +NYQ RMDTLA+VLYYPQKPLV T++ME
Sbjct: 732  VCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTSNYQMRMDTLAHVLYYPQKPLVCTKSME 791

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
             LHF++L +G+NA +AIACY+GYNQEDS+++NQS+IDRGFFRS+FFR+Y D  K+     
Sbjct: 792  FLHFKELSSGLNASIAIACYTGYNQEDSIMLNQSAIDRGFFRSVFFRTYDDCSKE----- 846

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-----QDEAQG 890
             E F  PD + T G +HG YDKLD DGL  PG  VSG+D+I+GK   ++     +D    
Sbjct: 847  GEVFAIPDFAKTSGRKHGDYDKLDIDGLICPGVLVSGDDIIVGKVAKMTSNTFNEDLRDS 906

Query: 891  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
             A ++  +D S  L+HSE+G++DQV+LTTN +  +F KV++R+VRIPQIGDKF+SRHGQK
Sbjct: 907  TAKKF--KDCSTPLKHSESGIIDQVILTTNDEAQKFTKVKMRAVRIPQIGDKFASRHGQK 964

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GT GMTY QED+P+T EG+ PD+IVNPHAIPSRMTIG LIEC++ KVA+  G EGDATPF
Sbjct: 965  GTCGMTYRQEDLPFTREGVVPDMIVNPHAIPSRMTIGHLIECLLSKVASLNGSEGDATPF 1024

Query: 1011 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 1070
                VD IS+ LH+ GYQ  G E MYNG TGR+   +IFLGPT+YQRLKHMV DKIHSRG
Sbjct: 1025 CGQNVDEISQLLHELGYQRYGNEVMYNGFTGRKFEVLIFLGPTFYQRLKHMVGDKIHSRG 1084

Query: 1071 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 1130
            RGP QILTRQP EGRSRDGGLRFGEMERDCMI+HGA+ FLKERLFD SD YRVH+C+ CG
Sbjct: 1085 RGPTQILTRQPTEGRSRDGGLRFGEMERDCMISHGAARFLKERLFDVSDCYRVHICQTCG 1144

Query: 1131 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            LI  ANL +  +EC  C N ++I QV IPYA KLL QELMAM +APR+ T
Sbjct: 1145 LICQANLAEQRYECNNCNNTSNICQVKIPYAAKLLIQELMAMQLAPRLRT 1194


>gi|120561277|gb|ABM27023.1| RNA polymerase II second largest subunit, partial [Neocallimastix
            frontalis]
          Length = 915

 Score = 1328 bits (3436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/915 (68%), Positives = 748/915 (81%), Gaps = 19/915 (2%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+M++N +YVF K  P+ Y+Y AE+RS  E+ +R  ST++++ML++ SA+  
Sbjct: 1    SEKVLIAQERMASNVIYVFAKSPPSPYSYTAEIRSAVETGSRHASTLYIKMLAKASARAN 60

Query: 258  SS--GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA 315
            S   GQ I+ATLPYIR +IPI+IVFRALG V D+DILEHICYDF DTQM+E+L+P +E+A
Sbjct: 61   SEIVGQSIKATLPYIRQDIPIVIVFRALGIVPDRDILEHICYDFNDTQMLEMLKPCIEDA 120

Query: 316  FVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 375
            FVIQ++++ALD+IGKRG TVGVT++KR++YA EILQKE+LPH+GT    ETKKAY+FGY+
Sbjct: 121  FVIQDKEIALDFIGKRGTTVGVTKEKRMRYAAEILQKELLPHIGTKAHTETKKAYFFGYM 180

Query: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 435
            IHRLLL AL RR  DDRDH+G KRLDLAGPLLG LFRMLFRKLT DV   +QKC+D  ++
Sbjct: 181  IHRLLLAALERRECDDRDHFGKKRLDLAGPLLGSLFRMLFRKLTSDVSKSLQKCIDRNRE 240

Query: 436  VNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
             NL  AI+  TIT GLKYSLATGNWG Q+    +RAGVSQVLNR T+ASTLSHLRRLN+P
Sbjct: 241  FNLNVAIRPNTITDGLKYSLATGNWGAQSKFMQSRAGVSQVLNRYTFASTLSHLRRLNTP 300

Query: 495  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
            IGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM Y++VGS++ PI+EFLEEW
Sbjct: 301  IGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYVSVGSSSAPIIEFLEEW 360

Query: 555  GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
              EN EE+  + I  ATKIFVNG WVG+HRDPE LVKTLR LRR  +VN E+ +VRDIR 
Sbjct: 361  SMENMEEVHVSHILNATKIFVNGVWVGVHRDPEHLVKTLRDLRRGQNVNAEISIVRDIRE 420

Query: 615  KELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR-ESPEDGGWHDLVAKGFIEYIDT 673
            +ELRIYTD GR  RPLFIVE Q+L +KK  I  +Q++ E+ E  GW DL+  G IE+ID 
Sbjct: 421  RELRIYTDAGRICRPLFIVENQKLKLKKSHIALIQEKNETGEGWGWDDLIENGIIEFIDA 480

Query: 674  EEEETTMISMTINDL-------------VQARLHPEEAYADTYTHCEIHPSLILGVCASI 720
            EEEETT+I M+  DL             +  RL     Y+  +THCEIHPS+ILG+CASI
Sbjct: 481  EEEETTLICMSHEDLDPKDTEMDIQDYGISKRLKSRSVYSRNWTHCEIHPSMILGICASI 540

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            +PFPDHNQSPRNTYQSAMGKQAMGIY+TN+Q RMDT+A +LYYPQKPLVTTRAME+L FR
Sbjct: 541  VPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQLRMDTMANILYYPQKPLVTTRAMEYLRFR 600

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
             LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLF+RSY D+EKK+G    E+F 
Sbjct: 601  DLPAGQNAIVAIACYSGYNQEDSIIMNQSSIDRGLFRSLFYRSYMDQEKKVGMFNVENFE 660

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS-RYTRR 898
            +P R   + +RHG+Y+KL+DDGL  PG RV+G+D+IIGKT P+SQD E  GQ +  +T+R
Sbjct: 661  KPTRETCLRLRHGTYEKLEDDGLIAPGIRVTGDDIIIGKTIPLSQDSEELGQRTEHHTKR 720

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  LR +ETG+VD+VL+T N DG+RFVKVRVRS RIPQ+GDKF+SRHGQKGTVGMTY 
Sbjct: 721  DASTPLRSTETGIVDRVLVTNNQDGMRFVKVRVRSTRIPQMGDKFASRHGQKGTVGMTYR 780

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
             EDMP+TV GITPDII+NPHAIPSRMTIG L+EC++GKV+   G EGDATPFTDVTV+ I
Sbjct: 781  TEDMPFTVNGITPDIIINPHAIPSRMTIGHLVECLLGKVSTLTGDEGDATPFTDVTVEAI 840

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
            SK L + GYQ RGFE M+NGHTG++L A IFLGPTYYQRLKHMVDDKIHSR RGPVQILT
Sbjct: 841  SKLLRENGYQSRGFEVMFNGHTGKKLQAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILT 900

Query: 1079 RQPAEGRSRDGGLRF 1093
            RQP EGRSRDGGLRF
Sbjct: 901  RQPVEGRSRDGGLRF 915


>gi|45545313|gb|AAS67504.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Candida tropicalis]
          Length = 1020

 Score = 1316 bits (3407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/1023 (61%), Positives = 789/1023 (77%), Gaps = 51/1023 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK  P+  ++VAE+RS  E  +R  S+M +++  R   + G
Sbjct: 1    SEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIKLYGRD--EKG 58

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
             +G+ I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD  D QM+E+L+P +EE FV
Sbjct: 59   VAGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFV 118

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  ET+KA++ GY+++
Sbjct: 119  IQEREVALDFIGRRG-VLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVN 177

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLLCAL R+  DDRDH+G KRLDLAGPLL GLFR+LF+KLT+D+  Y+Q+CV+N  D N
Sbjct: 178  RLLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRILFKKLTKDIYNYMQRCVENDSDFN 237

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+STLSHLRR N+PIG
Sbjct: 238  LTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIG 297

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS++ PIL FL ++G 
Sbjct: 298  RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGSSSEPILGFLRDFGL 357

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E  E+  P+  P +T+IFVNG WVG+HRDP  LV  +R LRR  D++ EV ++RDIR KE
Sbjct: 358  EVLEDYVPSNAPDSTRIFVNGVWVGVHRDPAQLVDYVRDLRRSGDISPEVSIIRDIREKE 417

Query: 617  LRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIAL-------------QQRESPED 656
             +I+TD GR  RPLFIV+       K  L+I K  I  L             ++      
Sbjct: 418  FKIFTDAGRVYRPLFIVDDNEDSPTKGDLMITKEHIRKLVAEDMDDDELEEDEEGGESRK 477

Query: 657  GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA-----------------------RL 693
              W  LV++G + Y+D EEEET MI+M+ +D+  +                       R+
Sbjct: 478  YTWSSLVSEGIVVYVDAEEEETIMIAMSPDDVKASKSTMSESEQQELQLQEQELDPAKRI 537

Query: 694  HPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 752
             P   +   TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  
Sbjct: 538  KPTTSSNTHTYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSV 597

Query: 753  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 812
            RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA+VAIACYSGYNQEDS+IMNQSSID
Sbjct: 598  RMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAVVAIACYSGYNQEDSMIMNQSSID 657

Query: 813  RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 872
            RG FRSLFFRSY D EK+ G  + E F +P RS+T+ ++HG+Y+KLD+DGL  PG RVSG
Sbjct: 658  RGLFRSLFFRSYMDLEKRQGMKLLETFEKPSRSDTLRLKHGTYEKLDEDGLIAPGIRVSG 717

Query: 873  EDVIIGKTTPISQD-EAQGQAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 930
            ED+IIGKTTPI  D E  GQ +  +++RD S  LR +E+G+VDQVLLTTN DG +FVKVR
Sbjct: 718  EDIIIGKTTPIPADTEELGQRTLHHSKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVR 777

Query: 931  VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 990
            +R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ EGI PD+I+NPHAIPSRMT+  LI
Sbjct: 778  MRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTVAHLI 837

Query: 991  ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 1050
            EC++ KV++  G EGDA+PFTDVT + I+K L + GYQ RGFE MYNGHTG++L A +F 
Sbjct: 838  ECLLSKVSSLSGFEGDASPFTDVTAEAIAKLLREHGYQSRGFEVMYNGHTGKKLMAQVFF 897

Query: 1051 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFL 1110
            GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FL
Sbjct: 898  GPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFL 957

Query: 1111 KERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 1169
            KERL + SDA+RVHVC  CGL++ IANLKKN FECR CKNKT+I Q+HIPYA KLLFQE 
Sbjct: 958  KERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEF 1017

Query: 1170 MAM 1172
            M+M
Sbjct: 1018 MSM 1020


>gi|120561275|gb|ABM27022.1| RNA polymerase II second largest subunit, partial [Neocallimastix
            frontalis]
          Length = 915

 Score = 1313 bits (3398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/915 (67%), Positives = 745/915 (81%), Gaps = 19/915 (2%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+M++N +YVF K  P+ Y+Y AE+RS  ES +R  ST++++ML++ S +  
Sbjct: 1    SEKVLIAQERMASNIIYVFAKTPPSPYSYTAEIRSAVESGSRHASTLYIKMLAKASTRAN 60

Query: 258  SS--GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA 315
            S   GQ I+ATLPY+R +IPI+IVFRALG V D+DILEHICYDF+D QM+E+L+P +E+A
Sbjct: 61   SEIVGQSIKATLPYVRQDIPIVIVFRALGVVPDRDILEHICYDFRDYQMLEMLKPCIEDA 120

Query: 316  FVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 375
            FVIQ++++ALD+IGKRG TVGVT++KRI+YA EILQKE+LPH+GT    ETKKAY+FGY+
Sbjct: 121  FVIQDKEIALDFIGKRGTTVGVTKEKRIRYAAEILQKELLPHIGTRAHTETKKAYFFGYM 180

Query: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 435
            IHRLLL AL RR  DDRDH+G KRLDLAGPLLG LFRMLFRKLT+DV   +Q C+D  ++
Sbjct: 181  IHRLLLAALERRECDDRDHFGKKRLDLAGPLLGSLFRMLFRKLTKDVSKTLQMCIDRNRE 240

Query: 436  VNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
             NL  AI+  TI+ GLKYSLATGNWG Q+    +RAGVSQVLNR T+ASTLSHLRRLN+P
Sbjct: 241  FNLNSAIRPNTISDGLKYSLATGNWGAQSKFMQSRAGVSQVLNRYTFASTLSHLRRLNTP 300

Query: 495  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
            IGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM Y++VGS++ PI+EFLEEW
Sbjct: 301  IGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYVSVGSSSAPIVEFLEEW 360

Query: 555  GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
              EN EE+  + I  ATKIFVNG WVGIHRDP+ LVKTLR LRR  +VN E+ +VRDIR 
Sbjct: 361  TMENMEEVHVSHIIDATKIFVNGVWVGIHRDPDHLVKTLRDLRRSQNVNAEISIVRDIRE 420

Query: 615  KELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR-ESPEDGGWHDLVAKGFIEYIDT 673
            KEL+IYTD GR  RPLFIVE Q+L +KK  I  +Q+R E+ +  GW DL+  G IE+ID 
Sbjct: 421  KELKIYTDAGRICRPLFIVENQKLKLKKSHIAMIQERNETGQGWGWDDLIENGIIEFIDA 480

Query: 674  EEEETTMISMTINDL-------------VQARLHPEEAYADTYTHCEIHPSLILGVCASI 720
            EEEETT+I M+  DL                RL     Y+  +THCEIHPS+ILG+CASI
Sbjct: 481  EEEETTLICMSHEDLDPKDGEMNIQDYGTSKRLKSRSVYSRNWTHCEIHPSMILGICASI 540

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            +PFPDHNQSPRNTYQSAMGKQAMGIY+TN+Q RMDT+A +LYYPQKPLVTTRAME+L FR
Sbjct: 541  VPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQLRMDTMANILYYPQKPLVTTRAMEYLRFR 600

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
             LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLF+RSY D+EKK+G    E+F 
Sbjct: 601  DLPAGQNAIVAIACYSGYNQEDSIIMNQSSIDRGLFRSLFYRSYMDQEKKVGMFNVENFE 660

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQAS-RYTRR 898
            +P R   + +RHG+Y+KL+DDGL  PG RV+G+D+IIGKT P+SQD  + GQ +  +T+R
Sbjct: 661  KPTRETCLRLRHGTYEKLEDDGLIAPGIRVTGDDIIIGKTIPLSQDSQELGQRTEHHTKR 720

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  LR +ETG+VD+VL+T N DG++FVKVRVRS RIPQ+GDKF+SRHGQKGTVGMTY 
Sbjct: 721  DASTPLRSTETGIVDRVLVTNNQDGMKFVKVRVRSTRIPQMGDKFASRHGQKGTVGMTYR 780

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
             EDMP+T  GITPDII+NPHAIPSRMTIG L+EC++GKV+   G EGDATPFTDVTV+ I
Sbjct: 781  TEDMPFTFNGITPDIIINPHAIPSRMTIGHLVECLLGKVSTLTGDEGDATPFTDVTVEAI 840

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
            SK L + G+Q RGFE M+NGHTG++L A IFLGPTYYQRLKHMVDDKIHSR RGPVQILT
Sbjct: 841  SKLLRENGFQSRGFEVMFNGHTGKKLQAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILT 900

Query: 1079 RQPAEGRSRDGGLRF 1093
            RQP EGRSRDGGLRF
Sbjct: 901  RQPVEGRSRDGGLRF 915


>gi|116201245|ref|XP_001226434.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
 gi|88177025|gb|EAQ84493.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
          Length = 1182

 Score = 1311 bits (3393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1146 (56%), Positives = 822/1146 (71%), Gaps = 82/1146 (7%)

Query: 31   VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE---SADIEIRPE---SQHNPGQQSDFA 84
            VI ++F+ KGLV QQ+DSFDEF   T+Q +VDE    A + I  E      +  QQ   A
Sbjct: 52   VIQSHFDCKGLVAQQIDSFDEFTSTTIQSLVDEVTKRARVAINEEVALKDMDEEQQEYMA 111

Query: 85   ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 144
             T                    GE     PK  R            + T      G  GE
Sbjct: 112  RT--------------------GEA----PKTIRWEE---------EDTGPTEGSGKGGE 138

Query: 145  EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 204
            +  +      +F+GK+P+M++S  C L    ++ L  L ECPYDQGGYFIINGSEKVLIA
Sbjct: 139  DKGDL-----IFLGKLPVMVKSQVCHLAGEDDESLFLLNECPYDQGGYFIINGSEKVLIA 193

Query: 205  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 264
            QE+ + N V VFKK      +Y AE+RS  E  +R  S++ +++ S+ S + G     + 
Sbjct: 194  QERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHSKGSPEKGRLANTVS 253

Query: 265  ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVA 324
             TLPY+R ++ + IVFRALG V+D+DIL HICYD  DTQM+E LRP +EEAF IQ++++A
Sbjct: 254  VTLPYVREDVSLGIVFRALGIVSDEDILNHICYDRTDTQMLEALRPCIEEAFCIQDREIA 313

Query: 325  LDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 383
            LD+IGKRG    G  R  R++ AK++LQKEMLPH+   + CET+KA++ GY++HRLL CA
Sbjct: 314  LDFIGKRGNGNAGQNRMNRVRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHRLLQCA 373

Query: 384  LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIK 443
            LGRR  DDRDH+G KRLDL GPLL  LFR + R++T+D+ +Y+++C+D  K+ +L   IK
Sbjct: 374  LGRRDPDDRDHFGKKRLDLPGPLLAKLFRNVIRRMTQDLMSYMKRCIDTNKNFSLPLGIK 433

Query: 444  AKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
              T+T+GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GKLA
Sbjct: 434  HSTLTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLA 493

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VG+ A PI+EF+   G E  EE 
Sbjct: 494  KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVEFMIARGMEVLEEY 553

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
             P   P ATK+FVNG WVG+H+DP+ LV  ++ LRR+  ++ EV +VRDIR +E +I++D
Sbjct: 554  EPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQGLRRKNVISFEVSLVRDIRDREFKIFSD 613

Query: 623  YGRCSRPLFIVEKQ----------RLLIKKRDIIALQQ-----RESPEDGGWHDLVAKGF 667
             GR  RPLF VE++           L++ K  I  L+      +  P+  GW  L+  G 
Sbjct: 614  AGRVMRPLFTVEQEPNGESGAEMGALILNKDHIGRLKMDAELGKYHPDYWGWQGLLKSGA 673

Query: 668  IEYIDTEEEETTMISMTINDLVQ------ARLHPEEA-------------YADTYTHCEI 708
            IEY+D EEEET MI MT  DL Q       R+ P+ +                 YTHCEI
Sbjct: 674  IEYLDAEEEETVMICMTPQDLDQFRARKMGRIEPDNSGLGNNRIKTKPNPTTHMYTHCEI 733

Query: 709  HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 768
            HPS++LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +LYYPQKPL
Sbjct: 734  HPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPL 793

Query: 769  VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE 828
             TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D E
Sbjct: 794  ATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCE 853

Query: 829  KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEA 888
            K++G  + E F +P+RS+T+ ++H +YDKLD DG+  PG RVSGED+IIGKT PI+ D A
Sbjct: 854  KRVGINIVEQFEKPNRSDTLRLKHSTYDKLDADGIVAPGIRVSGEDIIIGKTCPINPDNA 913

Query: 889  Q-GQAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 946
            + GQ S ++ +RD S  LR +E+G++DQV++TTN DG+R+VKVRVR+ ++PQIGDKF+SR
Sbjct: 914  ELGQRSNQHVKRDASTPLRSTESGIIDQVVMTTNQDGMRYVKVRVRTTKVPQIGDKFASR 973

Query: 947  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
            HGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV+   G EGD
Sbjct: 974  HGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGD 1033

Query: 1007 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            ATPFTDVTVD++S  L + GYQ RGFE MY+GHTGR+L + IF GPTYYQRL+HMVDDKI
Sbjct: 1034 ATPFTDVTVDSVSDLLREHGYQSRGFEIMYHGHTGRKLRSQIFFGPTYYQRLRHMVDDKI 1093

Query: 1067 HSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVC 1126
            H+R RGP+QI+TRQP EGR+RDGGLRFGEMERDCMIAHGA+ FLKERLF+ SDA+RVH+C
Sbjct: 1094 HARARGPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHIC 1153

Query: 1127 EHCGLI 1132
            E CGL+
Sbjct: 1154 EICGLM 1159


>gi|67904266|ref|XP_682389.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
 gi|40742763|gb|EAA61953.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
          Length = 1028

 Score = 1309 bits (3388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/1020 (61%), Positives = 781/1020 (76%), Gaps = 41/1020 (4%)

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 261
            +IAQE+ + N V VFKK  P+   YVAE+RS  E  +R  S + +++  +  +  G  G 
Sbjct: 1    MIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSAKGGFGP 60

Query: 262  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 321
             IR+TLPYI+ +IPI+IVFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ++
Sbjct: 61   TIRSTLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDR 120

Query: 322  QVALDYIGKRGAT-VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            +VALD+I KRG++   +  ++R++YA+EI+QKE+LPH+   +  ET+KA++ GY++HRLL
Sbjct: 121  EVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLL 180

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
             CALGRR  DDRDH+G KRLDLAGPLL  LFR+LF ++TRD++ YVQ+CV++ +++ L  
Sbjct: 181  QCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVESDREIYLNV 240

Query: 441  AIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 499
             +KA T+T GL+Y+LATGNWG Q  AA  +AGVSQVL+R TYASTLSHLRR N+PIGR+G
Sbjct: 241  GLKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDG 300

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            K+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  
Sbjct: 301  KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVL 360

Query: 560  EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 619
            EE  P V P ATK+FVNG WVG+HR P  LV+T++ LRRR  ++ EV ++RDIR +E +I
Sbjct: 361  EEFEPQVTPNATKVFVNGVWVGVHRQPSHLVETMQALRRRNMISHEVSLIRDIREREFKI 420

Query: 620  YTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQ-RESPEDG----------GWHD 661
            +TD GR  RPLF+V+          L++ K  I  L++ +E P D           GW  
Sbjct: 421  FTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHIRKLEEDKELPPDMDPEDRRERYFGWDG 480

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDL-VQARLH-----PEEA------------YADTY 703
            LV  G +EY+D EEEET MI MT  DL +  +L      PEE              A T+
Sbjct: 481  LVKSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYALPEEQDPNKRVRSILSQRAHTW 540

Query: 704  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A +LYY
Sbjct: 541  THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYY 600

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+
Sbjct: 601  PQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRT 660

Query: 824  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 883
            Y D EK +G  V E F +P RS+T+GMR G+YDKLD+DG+  PG RVSGED+IIGKT P+
Sbjct: 661  YSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPGVRVSGEDIIIGKTAPL 720

Query: 884  SQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 941
            + D E  GQ ++ +T+ D S  LR +E G+VDQVL+TT  D LR VKVR+R  ++PQIGD
Sbjct: 721  APDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMTKVPQIGD 780

Query: 942  KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1001
            KF+SRHGQKGT+G+TY QEDMP+T EG+TPD+I+NPHAIPSRMTI  LIEC + KV+A  
Sbjct: 781  KFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSALR 840

Query: 1002 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 1061
            G EGDATPFTDVTVD+IS+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HM
Sbjct: 841  GFEGDATPFTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHM 900

Query: 1062 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 1121
            VDDKIH+R RGP QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD SD +
Sbjct: 901  VDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPF 960

Query: 1122 RVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            RVH+C+ CGL+  IA LKK  FECR C NK  I QVHIPYA KLLFQEL AM I+ RM T
Sbjct: 961  RVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNISARMFT 1020


>gi|224077110|ref|XP_002305136.1| predicted protein [Populus trichocarpa]
 gi|222848100|gb|EEE85647.1| predicted protein [Populus trichocarpa]
          Length = 690

 Score = 1308 bits (3386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/679 (94%), Positives = 653/679 (96%), Gaps = 17/679 (2%)

Query: 23  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
           ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSD
Sbjct: 12  ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 71

Query: 83  FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
           FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD
Sbjct: 72  FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 131

Query: 143 GEEVTETQDFTKVFIGK--------VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI 194
           GEEVTETQDFTKVFIGK        VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI
Sbjct: 132 GEEVTETQDFTKVFIGKASIMNYLFVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI 191

Query: 195 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA 254
           INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAESQNRPPSTMFVRMLSRTSA
Sbjct: 192 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRTSA 251

Query: 255 KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEE 314
           KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSLEE
Sbjct: 252 KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEE 311

Query: 315 AFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGY 374
           AFVIQNQQVALDYIGKRGATVGVTR+KRIKYAKEILQKEMLPHVG G++CETKKAYYFGY
Sbjct: 312 AFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY 371

Query: 375 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
           IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGK
Sbjct: 372 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK 431

Query: 435 DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
           DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP
Sbjct: 432 DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 491

Query: 495 IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
           IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW
Sbjct: 492 IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 551

Query: 555 GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
           GTENFEEISPAVIPQATKIFVNG WVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRL
Sbjct: 552 GTENFEEISPAVIPQATKIFVNGGWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRL 611

Query: 615 KELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES---------PEDGGWHDLVAK 665
           KELRIYTDYGRCSRPLFIVEKQ+LLI+K+DI ALQQR S           +GGWHDLV+K
Sbjct: 612 KELRIYTDYGRCSRPLFIVEKQKLLIRKKDIHALQQRVSHLIYNDHLFKYEGGWHDLVSK 671

Query: 666 GFIEYIDTEEEETTMISMT 684
           GFIEYIDTEEEETTMISMT
Sbjct: 672 GFIEYIDTEEEETTMISMT 690


>gi|6606105|gb|AAF19065.1|AF107793_1 DNA-dependent RNA polymerase II RPB140, partial [Emericella nidulans]
          Length = 1009

 Score = 1298 bits (3358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1009 (61%), Positives = 774/1009 (76%), Gaps = 41/1009 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK  P+   YVAE+RS  E  +R  S + +++  +  +  G
Sbjct: 1    SEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSAKG 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              G  IR+TLPYI+ +IPI+IVFRALG V+D+DIL HICYD  DT M+E+L+P +EE FV
Sbjct: 61   GFGPTIRSTLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFV 120

Query: 318  IQNQQVALDYIGKRGAT-VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            IQ+++VALD+I KRG++   +  ++R++YA+EI+QKE+LPH+   +  ET+KA++ GY++
Sbjct: 121  IQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMV 180

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+LF ++TRD++ YVQ+CV++ +++
Sbjct: 181  HRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVESDREI 240

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
             L   +KA T+T GL+Y+LATGNWG Q  AA  +AGVSQVL+R TYASTLSHLRR N+PI
Sbjct: 241  YLNVGLKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPI 300

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +  
Sbjct: 301  GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRN 360

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             E  EE  P V P ATK+FVNG WVG+HR P  LV+T++ LRRR  ++ EV ++RDIR +
Sbjct: 361  MEVLEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVETMQALRRRNMISHEVSLIRDIRER 420

Query: 616  ELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQ-RESPEDG---------- 657
            E +I+TD GR  RPLF+V+          L++ K  I  L++ +E P D           
Sbjct: 421  EFKIFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHIRKLEEDKELPPDMDPEDRRERYF 480

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARLH-----PEEA------------Y 699
            GW  LV  G +EY+D EEEET MI MT  DL +  +L      PEE              
Sbjct: 481  GWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYALPEEQDPNKRVRSILSQR 540

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
            A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A 
Sbjct: 541  AHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMAN 600

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSL
Sbjct: 601  ILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 660

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            F+R+Y D EK +G  V E F +P RS+T+GMR G+YDKLD+DG+  PG RVSGED+IIGK
Sbjct: 661  FYRTYSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPGVRVSGEDIIIGK 720

Query: 880  TTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            T P++ D E  GQ ++ +T+ D S  LR +E G+VDQVL+TT  D LR VKVR+R  ++P
Sbjct: 721  TAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMTKVP 780

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD+I+NPHAIPSRMTI  LIEC + KV
Sbjct: 781  QIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKV 840

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            +A  G EGDATPFTDVTVD+IS+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 841  SALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 900

Query: 1058 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 1117
            L+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKERLFD 
Sbjct: 901  LRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDV 960

Query: 1118 SDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLL 1165
            SD +RVH+C+ CGL+  IA LKK  FECR C NK  I QVHIPYA KLL
Sbjct: 961  SDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLL 1009


>gi|170084317|ref|XP_001873382.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650934|gb|EDR15174.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 942

 Score = 1294 bits (3348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/944 (64%), Positives = 751/944 (79%), Gaps = 27/944 (2%)

Query: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 267
            M+TNHVYVF K QP+   ++AE+RS  E   +  S   V+M  R   +  S G  ++AT+
Sbjct: 1    MATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMKATI 58

Query: 268  PYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDY 327
            PYI+ +IPI +VFR LG ++D+DILEHICYD QD QM+E+L+P +++ FVIQ+++VALD+
Sbjct: 59   PYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDF 118

Query: 328  IGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRR 387
            IG RG T G++R++RI+YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR
Sbjct: 119  IGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERR 178

Query: 388  AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTI 447
              DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TI
Sbjct: 179  ELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTI 238

Query: 448  TSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 506
            T+GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQ
Sbjct: 239  TNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 298

Query: 507  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 566
            LHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + 
Sbjct: 299  LHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSS 358

Query: 567  IPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 626
             P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR 
Sbjct: 359  TP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRV 417

Query: 627  SRPLFIVEKQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 684
             RPLFIVE Q+L ++K+ +  L     +  ++  W  LV  G IE +D EEEET MISMT
Sbjct: 418  CRPLFIVENQQLALQKKHVKWLSNGLNDDGDEYKWEHLVKGGIIELLDAEEEETVMISMT 477

Query: 685  INDLVQARL-------HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPD 725
              DL  +RL       H  +             +A T+THCEIHPS+ILG+CASIIPFPD
Sbjct: 478  PEDLENSRLQQSGVDLHANDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPD 537

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG
Sbjct: 538  HNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAG 597

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
             NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R 
Sbjct: 598  QNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRE 657

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSIS 903
            NT+ M+HG+YDK++DDGL  PGT V+GED+IIGKT PI  D E  GQ ++ +TRRD S  
Sbjct: 658  NTLRMKHGTYDKIEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTQTHTRRDVSTP 717

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
            L+ +E+G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP
Sbjct: 718  LKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMP 777

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023
            +T EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L 
Sbjct: 778  FTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLR 837

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
            + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP E
Sbjct: 838  QKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVE 897

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCE 1127
            GRSRDGGLRFGEMERDCMI+HG + FLKERLF+ SDAYR+HVC+
Sbjct: 898  GRSRDGGLRFGEMERDCMISHGIAGFLKERLFEASDAYRLHVCD 941


>gi|6606109|gb|AAF19067.1|AF107795_1 DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum]
          Length = 1109

 Score = 1282 bits (3317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1113 (55%), Positives = 805/1113 (72%), Gaps = 81/1113 (7%)

Query: 58   QEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAA 117
            QE+V+E   + +      +  +        Y++ FG + L++P MTE DG T+ + P+ A
Sbjct: 1    QELVEEQGQVTLDQTVPPSDDEPDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEA 60

Query: 118  RLRNLTYSAPLYVDVTKRVIKKGHDGEE-------------------------------- 145
            RLRNLTY++PLY+ ++K+++    +G E                                
Sbjct: 61   RLRNLTYASPLYLGISKKIM----EGRERLLSERDEEEEEIEEKGDEERRNRGTYLHWER 116

Query: 146  ---VTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
               + +  +   +FIGK+PIML+S YC L    E+ L    ECPYD GGYF+INGSEKVL
Sbjct: 117  KPTMEDEAEEENIFIGKMPIMLKSKYCILKDLGEQALYNWNECPYDSGGYFVINGSEKVL 176

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            IAQE+ + N V VFKK  P+   YVAE+RS  E  +R  S + +++ S+  +  G  G  
Sbjct: 177  IAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPT 236

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
            IR+TLPYI+T+IPI++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++
Sbjct: 237  IRSTLPYIKTDIPIVVVFRALGVVSDEDILNHICYDRNDTSMLEMLKPCIEEGFVIQDRE 296

Query: 323  VALDYIGKRGAT-VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 381
            VALD+I KRG++ + + ++KR++YA++I+QKE LPH+   +  ET+KA++ GY++HRLL 
Sbjct: 297  VALDFISKRGSSPMSMNQEKRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQ 356

Query: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 441
            CALGRR  DDRDH+G KRLDLAGPLL  LFR+LF +LT+D+  YVQ+CV+ G+ + L   
Sbjct: 357  CALGRRYVDDRDHFGKKRLDLAGPLLANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIG 416

Query: 442  IKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 500
            +KA T+T GLKY+LATGNWG Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK
Sbjct: 417  VKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGK 476

Query: 501  LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
            +AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM  ITVG+ + PI++F+ +   E  E
Sbjct: 477  IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNREVLE 536

Query: 561  EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIY 620
            E  P V P +TK+FVNG WVG+HRDP  LV T++ LRRR  ++ EV +V DIR +E +I+
Sbjct: 537  EFEPQVSPNSTKVFVNGVWVGVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIF 596

Query: 621  TDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQ-QRESPED----------GGWHDL 662
            TD GR  RPLF+V+          L++ K  I  L+  +E P D           GW  L
Sbjct: 597  TDAGRVCRPLFVVDNDPKSENSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGL 656

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLH------PEEAYAD--------------T 702
            V  G IEY+D EEEET MI MT  DL  ++ +      PEE   D              T
Sbjct: 657  VKSGVIEYVDAEEEETIMIVMTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHT 716

Query: 703  YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 762
            +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN++ RM+T+A +LY
Sbjct: 717  WTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILY 776

Query: 763  YPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR 822
            YPQKPL TTR+ME L FR+LPAG N IVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R
Sbjct: 777  YPQKPLATTRSMEFLKFRELPAGRNVIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYR 836

Query: 823  SYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
            +Y D EK +G  V E F +P RS+T+ M+HG+YDK+DDDG+  PG RVSGED+IIGKT+P
Sbjct: 837  TYTDSEKMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSP 896

Query: 883  ISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 940
            ++ + E  GQ ++ +T+ D S  LR +E+G+VDQVL++T+ D L+FVKVR+R+ +IPQIG
Sbjct: 897  LAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIG 956

Query: 941  DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 1000
            DKF+SRHGQKGT+G+TY  EDMP+T EG+TPD+I+NPHAIPSRMTI  LIEC + KV++ 
Sbjct: 957  DKFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSSL 1016

Query: 1001 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             G EGDATPFTDVTVD++S  L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 1017 RGYEGDATPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 1076

Query: 1061 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            MVDDKIH+R RGP QILTRQP EGR+RDGGLRF
Sbjct: 1077 MVDDKIHARARGPTQILTRQPVEGRARDGGLRF 1109


>gi|164428317|ref|XP_957106.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora crassa
            OR74A]
 gi|157072100|gb|EAA27870.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora crassa
            OR74A]
          Length = 1005

 Score = 1273 bits (3294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/991 (61%), Positives = 758/991 (76%), Gaps = 40/991 (4%)

Query: 182  LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP 241
            L ECPYDQGGYFIINGSEKVLIAQE+ + N V VFKK      +Y AE+RS  E  +R  
Sbjct: 4    LNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLI 63

Query: 242  STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            S++ +R+ ++     G     +  TLPY++ E+ + IVFRALG V+D+DIL HICYD +D
Sbjct: 64   SSLQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRD 123

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGT 360
            +QM+E LRP +EEAF IQ+++VALDYIGKRG  + G+ R+ RIK AKE+LQKE+LPH+  
Sbjct: 124  SQMLEALRPCIEEAFCIQDREVALDYIGKRGNGSTGINRNGRIKAAKEMLQKELLPHISQ 183

Query: 361  GDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR 420
             + CET+KA++ GY++H+LL C LGRR  DDRDH+G KRLDLAGPLL  LFR + R+LT+
Sbjct: 184  AEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQ 243

Query: 421  DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRL 479
            D+  Y+++CVD  K  +L   IKA T+T+GLKYSLATGNWG Q  A  + AGVSQVLNR 
Sbjct: 244  DLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRY 303

Query: 480  TYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 539
            T++STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +++
Sbjct: 304  TFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVS 363

Query: 540  VGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRR 599
            VG+ A PI+EF+     E  EE  P   P ATK+FVNG WVG+H+DP+ LV  ++ LRR+
Sbjct: 364  VGTLADPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQNLRRK 423

Query: 600  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE----------KQRLLIKKRDIIALQ 649
              ++ EV +VRDIR +E +I++D GR  RPLF+VE          K +L++ K  I  L+
Sbjct: 424  NIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVEQEDNSESGVEKGQLILTKEHIRRLE 483

Query: 650  QRES----PED-GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP------EEA 698
            Q +      ED  GW  L+  G IEY+D EEEET MI MT  DL   R H       E+ 
Sbjct: 484  QDKELGKYHEDYFGWQGLLESGAIEYLDAEEEETAMICMTPEDLDTYRQHKFKGREFEDD 543

Query: 699  YAD---------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
             A+                YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 544  AANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAM 603

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G ++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 604  GFFLTNYSRRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDS 663

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            VIMNQSSIDRG FRSLFFRSY D EK++G  + E F +PDRSNT+  +HG+YDKL++DG+
Sbjct: 664  VIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGI 723

Query: 864  APPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RV+G+D+IIGKT+PI+ D  + GQ  +++ +RD S  LR +E+G+VD V  TTN 
Sbjct: 724  IAPGIRVTGDDIIIGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQ 783

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            DGLR+VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIP
Sbjct: 784  DGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIP 843

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMTI  LIEC++ KV A  G EGDATPFTDVTVD++S  L + GYQ RGFE MY+GHTG
Sbjct: 844  SRMTIAHLIECLLSKVGALKGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEIMYHGHTG 903

Query: 1042 RRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCM 1101
            ++L A +F GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRFGEMERDCM
Sbjct: 904  KKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCM 963

Query: 1102 IAHGASHFLKERLFDQSDAYRVHVCEHCGLI 1132
            IAHGA+ FLKERLF+ SDA+RVH+CE CGL+
Sbjct: 964  IAHGAAAFLKERLFEVSDAFRVHICEICGLM 994


>gi|120561249|gb|ABM27009.1| RNA polymerase II second largest subunit, partial [Mucor hiemalis]
          Length = 884

 Score = 1256 bits (3251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/887 (66%), Positives = 716/887 (80%), Gaps = 25/887 (2%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+M+TN VYVF K  P+ + Y AE+RS  E  ++  S +F++M+ R SA+ G
Sbjct: 1    SEKVLIAQERMATNTVYVFSKAPPSNFQYTAEIRSQNEKGSKNASPLFIKMM-RASAERG 59

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            SSGQ IRA LPYIR+E+PI+IVFRALG VAD+D+LEHICYD  D +M+ELL+PS+EEAFV
Sbjct: 60   SSGQCIRAALPYIRSEVPIVIVFRALGQVADRDVLEHICYDRNDYEMLELLKPSIEEAFV 119

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+Q VALD+IGKRG TVG TR++RIKYA EILQKE+LPHVGT    ET+K+Y+FGY+IH
Sbjct: 120  IQDQDVALDFIGKRGTTVGATRERRIKYASEILQKELLPHVGTAYKTETRKSYFFGYMIH 179

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL AL RR  DDRDHYG KR+DLAG L+ GLFR+LF+KLT+DV  Y+QKC+++ ++ N
Sbjct: 180  RLLLAALERRELDDRDHYGKKRMDLAGVLMSGLFRLLFKKLTKDVAKYLQKCIESSREFN 239

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K+ TIT+GLKYSLATGNWG Q  AA  RAGVSQVLNR T+ASTLSHLRR N+PIG
Sbjct: 240  LTLAVKSNTITNGLKYSLATGNWGDQKKAAQARAGVSQVLNRYTFASTLSHLRRCNTPIG 299

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YI+VGSAA P++ FLEEW  
Sbjct: 300  RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSAATPLIMFLEEWAM 359

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            EN EE+S   I  ATK+FVNG W+GIHRDP  L+ +L+++RR VD++ EV +VRDIR KE
Sbjct: 360  ENLEELSATSIADATKVFVNGVWIGIHRDPGELINSLKQMRRSVDISPEVSIVRDIREKE 419

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEE 676
            LR+YTD GRC RPLF+VE Q+L + +  I+ +Q  E  +D GW D++A G +EY+D +EE
Sbjct: 420  LRMYTDAGRCCRPLFLVENQQLRLNREHIMRIQDTE--DDFGWQDMIADGIVEYVDADEE 477

Query: 677  ETTMISMTINDLVQARLHPE-------------------EAYADTYTHCEIHPSLILGVC 717
            ET MI MT  DL ++R+  +                    +Y+ T+THCEIHPS+ILG+C
Sbjct: 478  ETAMICMTPEDLAESRMTAQYGAPLQETRDLASRVKSQTGSYSHTWTHCEIHPSMILGIC 537

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q RMDTLA +LYYPQKPL TTR+ME L
Sbjct: 538  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQTRMDTLANILYYPQKPLTTTRSMEFL 597

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
             FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D EKK G +  E
Sbjct: 598  RFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDAEKKAGMMFME 657

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRY 895
            +F +P R +T+ ++HG+Y+KL+DDGL  PGTRVSG+D+IIGKT PI  D E  GQ  + +
Sbjct: 658  EFEKPTRDSTLRLKHGTYEKLEDDGLIAPGTRVSGDDIIIGKTAPIPADSEELGQRTTTH 717

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
             +RD S  LR +ETG+VDQV+LTTN DGL+FVKVRVRS R+PQ+GDKF+SRHGQKGT+GM
Sbjct: 718  NKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGM 777

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1015
            TY QED P++ EGITPD+I+NPHAIPSRMTIG +IEC++GKV+   G EGDATPFTDVTV
Sbjct: 778  TYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIECLLGKVSTLTGNEGDATPFTDVTV 837

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            + IS+AL   GYQ RGFE MYNG TGR+L   +FLGPTYYQRLKHMV
Sbjct: 838  EAISQALQAQGYQSRGFEVMYNGFTGRKLNVQVFLGPTYYQRLKHMV 884


>gi|160331027|ref|XP_001712221.1| rpb2 [Hemiselmis andersenii]
 gi|159765668|gb|ABW97896.1| rpb2 [Hemiselmis andersenii]
          Length = 1222

 Score = 1254 bits (3246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1229 (51%), Positives = 841/1229 (68%), Gaps = 80/1229 (6%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            +  +E I Q+D W ++ ++F+E  LVRQQLDSF+EFIQNTMQ+I+D+   I I+ E    
Sbjct: 4    DKNDEIIKQDDMWIILESFFKENNLVRQQLDSFNEFIQNTMQDIIDDIPPIVIKTEFDKF 63

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
               ++  +  +  + FGQ++LSKP   E +G T TL P  ARLRNLTYS+PLY D++   
Sbjct: 64   KSSETKKSLKLI-LRFGQLHLSKPTFIEENGTTHTLLPNEARLRNLTYSSPLYCDISTIT 122

Query: 137  IKKGHD-GEEVTET---QDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 192
            +    +   E+ E     D  K+ +G++PIM++S +C L +    DL  +GECP D GGY
Sbjct: 123  LNITEELTGEIKENFLKDDHQKILLGRIPIMVKSRFCVLDKLLPMDLIRIGECPIDPGGY 182

Query: 193  FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA------------YVAEVRSMAESQNRP 240
            FIINGSEKV++ QE+++ N+VY+F K++  K +            Y AE RS+AE     
Sbjct: 183  FIINGSEKVIVGQEQLAWNYVYIFSKKETTKNSSKLYFYTKKNLLYFAECRSVAEFGRWS 242

Query: 241  PSTMFVRM----------LSRTSAKGGSS------GQYIRATLPYIRTEIPIIIVFRALG 284
            PS + V++          +++ S+   +S      G Y+RA LP  + +IP+  +F+ALG
Sbjct: 243  PSLLTVKVCITVFPKKNKINKQSSSSTNSALHFYGGLYLRAILPLFKKDIPVTWIFKALG 302

Query: 285  FVADKDILEHICYDFQDTQMMELLRPSLE-------EAFV----IQNQQVALDYIGK--- 330
            F  + +IL HICY+ +D +++E +R SLE       E F     I +Q+ AL  IG+   
Sbjct: 303  FENETEILRHICYNDEDEELIESIRYSLEDDKLMASETFSNISSILDQETALAAIGQHIS 362

Query: 331  RGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 390
            RGA     +  RIK+A E LQKE LPHVG G   E +K ++FGYII++L+   +G+RA D
Sbjct: 363  RGA-----QSLRIKHAYETLQKEFLPHVGIGQGFELRKGFFFGYIINKLMATQIGKRATD 417

Query: 391  DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN-LQFAIKAKTITS 449
            DRDHYG+KRLD+AGPLL  LFR L  K+ +D+R  +Q+  + GK+ N +   IK   +T+
Sbjct: 418  DRDHYGHKRLDVAGPLLSVLFRQLLGKVIKDLRTSLQRKSNLGKNFNQISDFIKPSFLTT 477

Query: 450  GLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 509
            G++Y+LATGNWG    A +R GVSQVLNRL+++STLSHLRRLNSP G++G L KPRQLHN
Sbjct: 478  GIQYALATGNWGTDKQA-SRTGVSQVLNRLSFSSTLSHLRRLNSPSGKDGNLTKPRQLHN 536

Query: 510  SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ 569
            S WG++CPAETPEG +CGLV+NLAL  ++T+GS+  PI+EFLEE+  EN  ++    +  
Sbjct: 537  SHWGLICPAETPEGHSCGLVRNLALSAFVTIGSSTLPIMEFLEEFKIENLSDVKLEKLKF 596

Query: 570  ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRP 629
            + KIFVNGCW+GIH  P  LVK LR+ RR   +  E+ +  DI+ KE+RI TD GR  RP
Sbjct: 597  SYKIFVNGCWIGIHDKPLNLVKNLRKGRRLGFLREEISISFDIKEKEIRISTDSGRICRP 656

Query: 630  LFIVEKQRL--------------LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            L IV  ++L              L+KK  +  ++   S     +HDL+ +G +E+ID EE
Sbjct: 657  L-IVLNEKLSKNTNGTEIKTFLPLLKKSHLSKIKNDPS---FSFHDLLKEGIVEFIDAEE 712

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EE  +ISM + +  Q +     +    YTHCEIHPSLILGVC S IPF DHNQSPRNTYQ
Sbjct: 713  EEICLISMFLKETFQKKFR---SLNIEYTHCEIHPSLILGVCGSFIPFSDHNQSPRNTYQ 769

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            +AMGKQA+GI   N+QFRMDT+A++LYYPQ PLV TRAM+ ++++  P GIN+IVAIACY
Sbjct: 770  AAMGKQAIGINSLNFQFRMDTMAHILYYPQTPLVVTRAMKFMNYKNFPNGINSIVAIACY 829

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
             GYNQEDS+IM+Q +IDRG FRS+F+R YRDEEK     +KE F  P   + +G + GSY
Sbjct: 830  GGYNQEDSIIMSQDAIDRGLFRSVFYRCYRDEEKTKFGGLKEIFEIPKFEDCIGCKTGSY 889

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTP-----ISQDEAQGQASRYTRRDHSISLRHSETG 910
             KLD DGL   GTRVSG+D+IIGKT P     I    A  + +   ++D S + R  E+G
Sbjct: 890  QKLDLDGLVSEGTRVSGDDIIIGKTVPYDFSKIKSSLAPLEKTLKFKKDASTAARSFESG 949

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VD+V++ T+  G + VK+R+RSVRIPQIGDKF+SRHGQKG VGM Y Q D+P+T +GI 
Sbjct: 950  VVDKVMIGTSDLGTKLVKIRIRSVRIPQIGDKFASRHGQKGIVGMLYKQVDLPFTKDGII 1009

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDII+NPHAIPSRMTIG L+E ++ KV+A  G EGD +PF ++TV+ ISK L    ++  
Sbjct: 1010 PDIIMNPHAIPSRMTIGHLLEGLLSKVSALGGMEGDGSPFCNITVEKISKKLESLNFEKN 1069

Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
            G+E M NG TG  L AMIF+GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGG
Sbjct: 1070 GWEIMRNGETGNNLNAMIFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGG 1129

Query: 1091 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNK 1150
            LRFGEMERDCM++HGAS FLK+RL DQSDA+ + +C+ CGLIAIAN KK  FECR C N+
Sbjct: 1130 LRFGEMERDCMMSHGASIFLKDRLMDQSDAFSIFLCDLCGLIAIANPKKRIFECRSCLNR 1189

Query: 1151 TDIVQVHIPYACKLLFQELMAMAIAPRML 1179
              I  V IPYACKLLFQELMAMAIAPRM+
Sbjct: 1190 NSISLVKIPYACKLLFQELMAMAIAPRMI 1218


>gi|40644726|emb|CAD92665.1| RNA polymerase II [Mimulus guttatus]
          Length = 629

 Score = 1254 bits (3245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/629 (95%), Positives = 617/629 (98%), Gaps = 1/629 (0%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHR+P+MLV TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 61   WVGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK+DI ALQQRESP+DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV ARL+P EA
Sbjct: 121  LIKKKDIQALQQRESPDDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPGEA 180

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181  YSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYR E KKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 301  LFFRSYRAEXKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 360

Query: 879  KTTPISQDEAQGQA-SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            KTTPI+ DEAQGQA +RYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP
Sbjct: 361  KTTPITPDEAQGQANARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 420

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIVNPHAIPSRMTIGQLIEC+MGKV
Sbjct: 421  QIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGINPDIIVNPHAIPSRMTIGQLIECVMGKV 480

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG+ETMYNGHTGR+LT+MIFLGPTYYQR
Sbjct: 481  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGYETMYNGHTGRKLTSMIFLGPTYYQR 540

Query: 1058 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 1117
            LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQ
Sbjct: 541  LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQ 600

Query: 1118 SDAYRVHVCEHCGLIAIANLKKNSFECRG 1146
            SDAYR+HVCE CGLIAIANLKKNSFECR 
Sbjct: 601  SDAYRIHVCEKCGLIAIANLKKNSFECRA 629


>gi|45545323|gb|AAS67509.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Cryptococcus neoformans]
          Length = 1114

 Score = 1252 bits (3240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1091 (56%), Positives = 787/1091 (72%), Gaps = 59/1091 (5%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            D++E I+QED W V +++FEEKGLVRQQL+SF+EFI+ TMQEIVD+ + + +   +Q+  
Sbjct: 35   DDDEPISQEDYWTVTNSFFEEKGLVRQQLESFNEFIETTMQEIVDDHSRLTLDQFTQYT- 93

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
            G   D     Y+ISFGQIYL++   TE DG T  LFP+ ARLRNLTYSAPLYVD+ KR +
Sbjct: 94   GVAGDETRR-YEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTL 152

Query: 138  KK---------------GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 182
                             G DGE   E  +  K  IGKVP+M+RS++C L+   +    E+
Sbjct: 153  TASGVDDPVEADWQPAVGDDGE--VEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEI 210

Query: 183  GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS 242
            GECPYDQGGYFII+GSEKVLIAQE+M+TNHV+VF K  P ++ Y AE+ S  E   R  +
Sbjct: 211  GECPYDQGGYFIISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVAN 270

Query: 243  TMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDT 302
               VRM +R S   G++G  IR +LPY + +IP+++VFRALG V D+D+L HIC+  +D 
Sbjct: 271  HTEVRMYARAS---GTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDE 327

Query: 303  QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
             ++E+L+PS+EE+F +Q++  ALD+IG+RG      R +R + A +IL KE LPHV T +
Sbjct: 328  ALLEMLQPSIEESFAVQDRDTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAE 387

Query: 363  FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
              E+KKAY+ GY++HRL + ALGRR  DDRDH+GNKRLDLAGPL+  +F ++F KL  D+
Sbjct: 388  GFESKKAYFLGYMVHRLCMAALGRRELDDRDHFGNKRLDLAGPLMAEMFNVVFGKLREDM 447

Query: 423  RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA 482
              Y++KCV+  K+  L  AI+  TIT GLKY+LATGNWG+ +   TRAGVSQVLN  T+ 
Sbjct: 448  YRYLKKCVEQNKEFALNMAIRPNTITDGLKYALATGNWGKRD--NTRAGVSQVLNSYTFT 505

Query: 483  STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 542
            STLSHLRR N+PIGR+ K AKPRQLH++ WGM+CPAETPEG ACGLVKNLALM YI+VGS
Sbjct: 506  STLSHLRRTNTPIGRDSKAAKPRQLHDTHWGMVCPAETPEGSACGLVKNLALMSYISVGS 565

Query: 543  AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV 602
             + P++EFLEEWG E+  E   A  P ATK+FVNG W+GIHRD   L   L ++RR   +
Sbjct: 566  YSAPVMEFLEEWGLEDLSEYQDA--PTATKVFVNGVWMGIHRDAPTLHNNLLQMRRGGQL 623

Query: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQR--ESPEDGG 658
              EV +VRDIR +ELR+YTD GR  RPLFIV++  Q L +K+  I  + Q   E    G 
Sbjct: 624  KYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLLSGA 683

Query: 659  WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------------HPEEAY------ 699
            W  L+++G +EY+D  EEET +I+MT  DLV AR              H  E++      
Sbjct: 684  WDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNLESFDPAARI 743

Query: 700  -----ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
                 +  YTH EIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TNYQ RM
Sbjct: 744  KSTVWSQQYTHMEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVCLTNYQLRM 803

Query: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
            DT+  VLYYPQKPL TTR+ME+L F +LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG
Sbjct: 804  DTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRG 863

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS---YDKLDDDGLAPPGTRVS 871
             FRSL+FRSY D EK  G +  E   +PDR+ T+ M+HG+   Y KLD DGL  PGT V+
Sbjct: 864  LFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGLVAPGTNVN 923

Query: 872  GEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 929
            G+D++IGKT P+ +D E  GQ ++ +T+RD S  L+ +E G+VDQV+L+TN +G  FVK+
Sbjct: 924  GDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKI 983

Query: 930  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 989
            RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PDII+NPHAIPSRMTIG L
Sbjct: 984  RVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMTIGHL 1043

Query: 990  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 1049
            +EC++ KV+   G EGDATPFT++TV+ +SK L   GYQ RGFE +Y+GHTGR+L A ++
Sbjct: 1044 VECLLSKVSTLTGAEGDATPFTELTVEAVSKVLRAKGYQSRGFELLYHGHTGRKLQAQVY 1103

Query: 1050 LGPTYYQRLKH 1060
             GPTYYQRLKH
Sbjct: 1104 FGPTYYQRLKH 1114


>gi|147903615|ref|NP_001083372.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Xenopus
           laevis]
 gi|38014674|gb|AAH60458.1| MGC68569 protein [Xenopus laevis]
          Length = 949

 Score = 1251 bits (3238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/948 (65%), Positives = 746/948 (78%), Gaps = 21/948 (2%)

Query: 6   YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
           YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2   YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64  SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
           +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62  APPIDLQAEAQHTTGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
           YSAPLYVD+TK V+K   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120 YSAPLYVDITKTVVK---EGEEQIQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175

Query: 184 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
           ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY AE RS  E+ +RP S+
Sbjct: 176 ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTAECRSCLENSSRPTSS 234

Query: 244 MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
           ++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235 IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294

Query: 302 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
            +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  
Sbjct: 295 PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354

Query: 362 DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
           DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355 DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422 VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
           VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415 VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
           +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475 FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISV 534

Query: 541 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
           GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535 GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601 D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
           D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+K+R I  L++RE   +  W
Sbjct: 595 DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREY-NNYSW 653

Query: 660 HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
            DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654 QDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPSMILGVCAS 709

Query: 720 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
           IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
           R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F
Sbjct: 770 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVF 829

Query: 840 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
            +P R    GMRH  YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+
Sbjct: 830 EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 889

Query: 898 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
           RD S  LR SETG+VDQV++T N +G +F K+RV    I   G K+S+
Sbjct: 890 RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVSFTSIVYFG-KYSN 936


>gi|45545301|gb|AAS67498.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Amanita phalloides]
          Length = 917

 Score = 1248 bits (3228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/921 (64%), Positives = 727/921 (78%), Gaps = 29/921 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+M+TNHVYVF K QP+   ++AE+RS  E   +  S   V+M  R   +  
Sbjct: 1    SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER-- 58

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            S G  I+AT+PYI+ ++PI +VFRALG ++D+DILEHICYD QD QM+E+L+P +++ FV
Sbjct: 59   SLGNVIKATIPYIKVDVPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFV 118

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++VALD+IG RG T G++R++RI+YA+EILQKEMLPHV   +  E+KKAY+FGY+IH
Sbjct: 119  IQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYMIH 178

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLL+ AL RR  DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+ KCV+  K+ N
Sbjct: 179  RLLVAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLSKCVETHKEFN 238

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K +TIT+GLKYSLATGNWG Q  +  T+AGVSQVLNR TYASTLSHLRR N+P+G
Sbjct: 239  LALAVKHQTITNGLKYSLATGNWGDQKKSMSTKAGVSQVLNRYTYASTLSHLRRCNTPLG 298

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            REGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG 
Sbjct: 299  REGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGL 358

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E+ EE + + +P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +E
Sbjct: 359  ESLEENAHSAVP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERE 417

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG---WHDLVAKGFIEYIDT 673
            LR+YTD GR  RPLFIVE  +L ++K+ +  L    S +DG    W  LV  G +E +D 
Sbjct: 418  LRLYTDAGRVCRPLFIVENHQLALQKKHVRWLGN-GSNDDGDVFRWEHLVKGGIVELLDA 476

Query: 674  EEEETTMISMTINDLVQARLHPEEA-------------------YADTYTHCEIHPSLIL 714
            EEEET MISMT  DL  +RL                         A T+THCEIHPS+IL
Sbjct: 477  EEEETVMISMTPEDLETSRLQQSGVDPNVNDGEYDPAVRLKAGTSAHTWTHCEIHPSMIL 536

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            G+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+M
Sbjct: 537  GICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSM 596

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G  
Sbjct: 597  EYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQ 656

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 893
              E+F +P R  T+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +
Sbjct: 657  QLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVTGEDIIIGKTAPIPPDSEELGQRT 716

Query: 894  R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
            R +TRRD S  L+ +E+G+VDQVL+TTN++G +FVKVRVR+ RIPQIGDKF+SRHGQKGT
Sbjct: 717  RTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGT 776

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            +G+TY QEDMP+T EGITPD+I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD
Sbjct: 777  IGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 836

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 1072
            +TV+++S  L + GY  RG E MY+GHTGR+L A I+LGPTYYQRLKHMVDDKIHSR RG
Sbjct: 837  LTVESVSTFLRQKGYHSRGLEVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHSRARG 896

Query: 1073 PVQILTRQPAEGRSRDGGLRF 1093
            PVQILTRQP EGRSRDGGLRF
Sbjct: 897  PVQILTRQPVEGRSRDGGLRF 917


>gi|120561251|gb|ABM27010.1| RNA polymerase II second largest subunit, partial [Basidiobolus
            ranarum]
          Length = 883

 Score = 1244 bits (3219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/888 (65%), Positives = 712/888 (80%), Gaps = 28/888 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+M++N VYVF K  P+ Y++ AE+RS+AE  ++  S +F++ML+R     G
Sbjct: 1    SEKVLIAQERMASNTVYVFSKTPPSPYSFTAEIRSVAEKGSKNASPLFLKMLAR-----G 55

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
             SGQYIRATLPYIR ++PI++VFRALG VAD+DILEHICYD +D  M+ELL+P +EEAFV
Sbjct: 56   DSGQYIRATLPYIRQDVPIVVVFRALGLVADRDILEHICYDQEDYAMLELLKPCIEEAFV 115

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ Q VALDYIGKRG TVG+ +DKRIKYA EILQKE LPHV T    ETKKAY+FGY++H
Sbjct: 116  IQEQHVALDYIGKRGTTVGINKDKRIKYATEILQKEFLPHVATEAHTETKKAYFFGYMVH 175

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL AL RR  DDRDHYG KR+DLAGPLL  LFRMLFRKLT+DV  Y+QKC+D+ ++ N
Sbjct: 176  RLLLAALERRDLDDRDHYGKKRMDLAGPLLAMLFRMLFRKLTKDVGRYLQKCIDSNREFN 235

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K+ TIT+GLKYSLATGNWG Q  A   RAGVSQVLNR T+ASTLSHLRR N+PIG
Sbjct: 236  LTLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIG 295

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM YI+VG+ + P++E L +W  
Sbjct: 296  RDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYISVGNPSAPVVEVLADWAM 355

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E+ E+ S   I  ATKIFVNG WVGIHRDP  L++T+RR RRRVD++ EV +VRDIR KE
Sbjct: 356  ESLEQFSANNIADATKIFVNGVWVGIHRDPGNLIETMRRFRRRVDISPEVSIVRDIRDKE 415

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE-SPEDGGWHDLVAKGFIEYIDTEE 675
            +R YTD GR  RPL++VE QR+ ++K  ++ALQ RE   E  GW DLV  G +EY+D EE
Sbjct: 416  IRFYTDAGRVCRPLYVVENQRITLRKEHVVALQMREYDGEPFGWQDLVVNGIVEYLDAEE 475

Query: 676  EETTMISMTINDLVQARLHPEEAY-------------------ADTYTHCEIHPSLILGV 716
            EE +MI MT  DL ++R++ +  Y                     T+THCEIHPS+ILG+
Sbjct: 476  EEVSMICMTPEDLSESRMYSKLGYIPEREVDVASRVKSSAALITHTWTHCEIHPSMILGI 535

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDT+A +LYYPQKPL TTRAME+
Sbjct: 536  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTMANILYYPQKPLCTTRAMEY 595

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAI CYSGYNQEDS+IMNQ+SIDRG FRS+F+RSY D+EKK+G +V 
Sbjct: 596  LRFRELPAGQNAIVAILCYSGYNQEDSLIMNQTSIDRGLFRSIFYRSYMDQEKKVGMMVM 655

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 894
            E+F +P R +T+ ++HG+Y+KL+ DGL  PGTRVSG+D+IIGKT PI  D E  GQ ++ 
Sbjct: 656  EEFEKPTRESTLRLKHGTYEKLEGDGLIAPGTRVSGDDIIIGKTAPIPPDSEELGQRTKT 715

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            +++RD S  LR +E G+VDQV+LTTN +GL+FVKVRVRS R+PQ+GDKF+SRHGQKGT+G
Sbjct: 716  HSKRDASTPLRSTENGIVDQVMLTTNQEGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIG 775

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP+  EGI PD+I+NPHAIPSRMTIG ++EC++ KV+   G EGDATPFT+VT
Sbjct: 776  VTYRQEDMPFNNEGIVPDLIINPHAIPSRMTIGHMVECLLSKVSTLSGNEGDATPFTEVT 835

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            V+ IS AL + GYQ RGFE +YNGHTGR+LTA I+ GPTYYQRLKHMV
Sbjct: 836  VEAISHALQEHGYQKRGFEVLYNGHTGRKLTAQIYFGPTYYQRLKHMV 883


>gi|6606089|gb|AAF19057.1|AF107785_1 DNA-dependent RNA polymerase II RPB140 [Agaricus bisporus]
          Length = 914

 Score = 1237 bits (3201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/920 (64%), Positives = 719/920 (78%), Gaps = 30/920 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+M+TNHVYVF K QP+   ++AE+RS  E   +  S   V+M  R   +  
Sbjct: 1    SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQERSV 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            S       T+PYI+ +IPI +VFR LG ++D+DILEHICYD QD QM+E+L+P +++ FV
Sbjct: 61   SF-----TTIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFV 115

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++VALD+IG RG T G++R++RI+YA+EILQKEMLPHV   +  E+KKAY+FGY+IH
Sbjct: 116  IQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIH 175

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL AL RR  DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ N
Sbjct: 176  RLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFN 235

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K +TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+G
Sbjct: 236  LALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLG 295

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            REGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG 
Sbjct: 296  REGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGL 355

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KE
Sbjct: 356  ESLEENAHSTSP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKE 414

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GWHDLVAKGFIEYIDTE 674
            LRIYTD GR  RPLFIVE Q+LL+ KR I  L      E     W  L+  G IE +D E
Sbjct: 415  LRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGSDDEGNEYKWEQLIKGGVIELLDAE 474

Query: 675  EEETTMISMTINDLVQARL-------HPEEA------------YADTYTHCEIHPSLILG 715
            EEET MISMT  DL  +RL       H  +             +A T+THCEIHPS+ILG
Sbjct: 475  EEETVMISMTPEDLENSRLQAAGVDPHANDGDFDPAARLKAGTHAHTWTHCEIHPSMILG 534

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            +CASIIPFPDHNQSPRNTYQSAM KQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME
Sbjct: 535  ICASIIPFPDHNQSPRNTYQSAMAKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSME 594

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
            +L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G   
Sbjct: 595  YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQ 654

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR 894
             E+F +P R  T+ M+HG+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R
Sbjct: 655  LEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTR 714

Query: 895  -YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
             +TRRD S  L+ +E G+VDQVL+TTN++G +FVKVRVR+ RIPQIGDKF+S HGQKGTV
Sbjct: 715  THTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASCHGQKGTV 774

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            G+TY QEDMP+T EGI PD+I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+
Sbjct: 775  GITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDL 834

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TV+++S  L + GYQ RG E MY+GHTGR+L A I+LGPTYYQRLKHMVDDKIHSR RGP
Sbjct: 835  TVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHSRARGP 894

Query: 1074 VQILTRQPAEGRSRDGGLRF 1093
            VQILTRQP EGRSRDGGLRF
Sbjct: 895  VQILTRQPVEGRSRDGGLRF 914


>gi|55583704|gb|AAV53371.1| RNA polymerase II second largest subunit [Strobilomyces floccopus]
          Length = 908

 Score = 1236 bits (3197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/911 (64%), Positives = 718/911 (78%), Gaps = 28/911 (3%)

Query: 214  YVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 273
            YVF K QP+   ++AE+RS  E   +  S   V+M  R   +  + G  ++AT+PYIR +
Sbjct: 1    YVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--TLGNIMKATIPYIRVD 58

Query: 274  IPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGA 333
            IPI +VFRALG ++D+DILEHICYD QD+QM+E+L+P +++ FVIQ+++VALD+IG RG 
Sbjct: 59   IPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCIDDGFVIQDREVALDFIGNRGT 118

Query: 334  TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 393
            T G++R++RI+YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRD
Sbjct: 119  TTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRD 178

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G KRLDLAGPLL  LFRMLF+KLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKY
Sbjct: 179  HFGKKRLDLAGPLLANLFRMLFKKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKY 238

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            SLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ W
Sbjct: 239  SLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHW 298

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            GM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK
Sbjct: 299  GMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTK 357

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            +FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFI
Sbjct: 358  VFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFI 417

Query: 633  VEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLV 689
            VE Q+L ++K+ I  L Q    +DG    W  LV  G IE +D EEEET MISMT  DL 
Sbjct: 418  VENQQLALQKKHIKWLNQGFRDDDGEEFKWEQLVKTGIIELLDAEEEETVMISMTPEDLE 477

Query: 690  QARL-----HPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSP 730
             +RL     +P E   D              T+THCEIHPS+ILGVCASIIPFPDHNQSP
Sbjct: 478  NSRLQSAGINPHENDGDFDPAARLKAGINAHTWTHCEIHPSMILGVCASIIPFPDHNQSP 537

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIV
Sbjct: 538  RNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV 597

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AI CYSGYNQED VIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M
Sbjct: 598  AILCYSGYNQEDFVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRM 657

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 908
            +HG+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R + RRD S  L+ +E
Sbjct: 658  KHGTYDKLEDDGLIAPGTNVKGEDIIIGKTAPIPPDSEELGQRTRTHNRRDVSTPLKSTE 717

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
             G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 718  NGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEG 777

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            I PD+++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ
Sbjct: 778  IVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQ 837

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
             RG E MY+GHTG++L A I+LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRD
Sbjct: 838  SRGLEVMYHGHTGKKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRD 897

Query: 1089 GGLRFGEMERD 1099
            GGLRFGEMERD
Sbjct: 898  GGLRFGEMERD 908


>gi|399949761|gb|AFP65418.1| DNA-directed RNA polymerase II second largest subunit [Chroomonas
            mesostigmatica CCMP1168]
          Length = 1222

 Score = 1234 bits (3192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/1221 (50%), Positives = 840/1221 (68%), Gaps = 73/1221 (5%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            I ++D W ++++YF+E  L+RQQ+DSF+EFI++ +Q+IVD+   + +  +S+   G    
Sbjct: 9    INEDDTWTLLNSYFKENNLIRQQIDSFNEFIESKIQDIVDDIPPLIVIDDSKKKTGSFEF 68

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV---TKRVIKK 139
                   +  GQ+++SKP   E +G T +L P  ARLRN +YS+PLY D+   T ++ ++
Sbjct: 69   SKNRKLILRLGQLHISKPTFIEENGMTHSLRPIDARLRNFSYSSPLYCDISITTLQIARE 128

Query: 140  GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
              +  E+ E ++  K  +G++PIM++S +C L +    D+ +  ECP+D GGYFIINGSE
Sbjct: 129  KEEEREIFEKEEHQKTLLGRLPIMIKSRFCVLDKLLPGDMVKFKECPFDAGGYFIINGSE 188

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYA------------YVAEVRSMAESQNRPPSTMFVR 247
            KV++ QE+++ NHVY+F K++ NK +            + AE RS+AE     PS + V+
Sbjct: 189  KVMVGQEQLAWNHVYIFPKKEINKSSEKIVFYTNKGILFFAECRSVAEFGRWSPSLLTVK 248

Query: 248  ML-----------------SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
            +                   + S      G Y+RA LPY + +IP+  +F+ALGF  + +
Sbjct: 249  VCVTVFPKKKKNKSTKNDNQKESLIHLYGGLYLRAILPYFKKDIPVTWIFKALGFENENE 308

Query: 291  ILEHICYDFQDTQMMELLRPSLEE------------AFVIQNQQVALDYIGKRGATVGVT 338
            IL ++CY  +D  ++E++R S+E+            +F++ +Q+ AL  IG+  +    T
Sbjct: 309  ILNYVCYGDEDEDLIEVIRYSIEDDRLTTANIFSNNSFIL-DQETALAVIGQHISKG--T 365

Query: 339  RDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 398
            +  RIK A EILQKE LPH+G G   E +K ++ GYII++L+   +G+R  DDRDHYG+K
Sbjct: 366  QGIRIKQAYEILQKEFLPHIGIGQGFELRKGFFLGYIINKLMNTQIGKRKTDDRDHYGHK 425

Query: 399  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF-AIKAKTITSGLKYSLAT 457
            RLD+AG LL  LFR L  K+ +D+R  +QK V   K+    F  +K++ IT+G++++LAT
Sbjct: 426  RLDVAGSLLSILFRQLLGKVIKDLRVSLQKKVSLHKNFQPIFDFLKSRLITTGIQFALAT 485

Query: 458  GNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 517
            GNWG  +   +R GVSQVLNRLT++S LSHLRRLNSP GR+GKL KPRQLHN+ WG++CP
Sbjct: 486  GNWG-IDKQVSRTGVSQVLNRLTFSSALSHLRRLNSPGGRDGKLTKPRQLHNTHWGLICP 544

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEG ACGLV+NLA+  ++T+GS + PILE LEE   +N  +I    + Q+ KIFVNG
Sbjct: 545  AETPEGHACGLVRNLAMTAFVTIGSPSDPILELLEESKIKNLSKIGFGKVRQSFKIFVNG 604

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 637
            CW+GIH +P +L+  +R+ RR   +  E+    D   KE+RI+TD GR SRPL +V+K  
Sbjct: 605  CWIGIHYNPLLLINLIRKARRSGKIREEISFSIDNLEKEIRIFTDSGRISRPLLVVKKNN 664

Query: 638  -------------LLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 684
                          L++KR I   ++ +  ++  + DL+ +G +EYID EEEE  +I+M+
Sbjct: 665  QYNRQNLGEKFFSFLLEKRHI---EKLKGDKNYLFSDLIKEGIVEYIDAEEEEMCLIAMS 721

Query: 685  INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
            I+++++  L   E     +TH EIHPS+ILGVC S IPFPDHNQSPRNTYQSAMGKQA+G
Sbjct: 722  IDEVIEQNLKTTET---DFTHSEIHPSMILGVCGSFIPFPDHNQSPRNTYQSAMGKQAIG 778

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            IY  N+QFRMDT+A++LYYPQKPLV TRAM+ L+++  P GINAIVAIACY GYNQEDS+
Sbjct: 779  IYSMNFQFRMDTMAHILYYPQKPLVVTRAMDFLNYKDFPNGINAIVAIACYGGYNQEDSI 838

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IM+Q +IDRG FRS+F+RSY+DEEK      KE F  P   + +G + GSY KLD DGL 
Sbjct: 839  IMSQDAIDRGLFRSVFYRSYKDEEKIKFGGQKEVFETPKIKDCVGFKSGSYTKLDLDGLI 898

Query: 865  PPGTRVSGEDVIIGKTTPISQDEAQGQASRYTR-----RDHSISLRHSETGMVDQVLLTT 919
              GT+VSG+D+IIGKT P +  EA+   +   R     +D S S+R  E+G+VD+VL+ T
Sbjct: 899  SEGTKVSGDDIIIGKTVPFNFFEAEYNLNSSERVYKFKKDSSTSVRSFESGIVDKVLIGT 958

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
               G + VK+R+RSVRIPQIGDKF+SRHGQKG VGM Y Q D+P+T +GI P+II+NPHA
Sbjct: 959  TDIGTKLVKIRIRSVRIPQIGDKFASRHGQKGIVGMLYKQVDLPFTPDGIIPEIIMNPHA 1018

Query: 980  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
            IPSRMTIG L+EC++ KVAA  G EGD +PF+ ++V+ I++ L K  Y+  G+E + NG 
Sbjct: 1019 IPSRMTIGHLLECLLSKVAALGGFEGDGSPFSKISVEKITEQLEKFNYEKFGWENLANGA 1078

Query: 1040 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1099
            TG  L A IF+GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGR+RDGGLRFGEMERD
Sbjct: 1079 TGELLEAKIFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRARDGGLRFGEMERD 1138

Query: 1100 CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 1159
            CMI+HGA+ FLK+RL DQSDA+ V VC+ CG IAI+N K+N +EC+ CK +  I Q+ IP
Sbjct: 1139 CMISHGAAVFLKDRLLDQSDAFTVFVCDFCGFIAISNHKQNIYECKSCKPRNSISQIKIP 1198

Query: 1160 YACKLLFQELMAMAIAPRMLT 1180
            YACKLLFQELM+MAI PRM+T
Sbjct: 1199 YACKLLFQELMSMAIGPRMMT 1219


>gi|120561245|gb|ABM27007.1| RNA polymerase II second largest subunit, partial [Capniomyces
            stellatus]
          Length = 924

 Score = 1229 bits (3181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/924 (63%), Positives = 722/924 (78%), Gaps = 30/924 (3%)

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKVLIAQE+++TN V+VFKK  P  + Y AE+RS+AE  ++  S +F++ L+R  A GG 
Sbjct: 2    EKVLIAQERIATNTVFVFKKNVPQVH-YTAEIRSVAERASKQASPLFLKKLARGKAGGGG 60

Query: 259  SGQY-----IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLE 313
                     I+AT+PYIR++IP+++VFRALG VA KDILEHICYD  D +++E  + S+E
Sbjct: 61   GSGGGSSGGIQATIPYIRSDIPVVVVFRALGMVAAKDILEHICYDGNDNELLEEFKGSIE 120

Query: 314  EAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 373
            E FVIQ+++V+LD+IGKRG TVGV+++KR+KYA+EILQKE LPHVGT    ET+K Y+FG
Sbjct: 121  EGFVIQDKEVSLDFIGKRGTTVGVSKEKRVKYAREILQKEFLPHVGTQAHNETRKTYFFG 180

Query: 374  YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG 433
            Y+IHRLLLC L RR +DDRDHYG KR+DLAGPLL  LFR LFRK+T+D+  Y+QKC+D+ 
Sbjct: 181  YMIHRLLLCGLERREQDDRDHYGKKRMDLAGPLLAMLFRNLFRKVTKDMTRYLQKCIDSK 240

Query: 434  KDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
            ++ NL  A+K+ TIT+GLKYSLATGNWG Q  A  +R GVSQVLNR T+ASTLSHLRR N
Sbjct: 241  REFNLTMAMKSNTITAGLKYSLATGNWGDQKKAMQSRTGVSQVLNRYTFASTLSHLRRCN 300

Query: 493  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
            +PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM +ITVG+ + PIL FLE
Sbjct: 301  TPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITVGTDSGPILLFLE 360

Query: 553  EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
            EW  EN EE++ + I  +TKIFVNG WVGIH++P  LV TL++LRRR++ + EV +VRD+
Sbjct: 361  EWAMENLEELAGSSINDSTKIFVNGVWVGIHKEPIRLVSTLKQLRRRLEFSYEVSIVRDV 420

Query: 613  RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESP--EDGGWHDLVAKGFIEY 670
            R KELRI TD GR  RPLF+V   RL I K  I A++ RE    E   WHDL+++G IEY
Sbjct: 421  REKELRILTDSGRVCRPLFVVNNSRLNINKDVIKAIEAREVSDVEAVRWHDLLSEGIIEY 480

Query: 671  IDTEEEETTMISMTINDLVQARLHPEEAYA-------------------DTYTHCEIHPS 711
            +D EEEET MI MT  +L ++RL+ E                        T+THCEIHPS
Sbjct: 481  LDAEEEETAMIIMTPQELTESRLYVENGIVPAVELDLASRVKSKRNIGISTWTHCEIHPS 540

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            +ILG+CASI+PFPDHNQSPRNTYQSAMGKQAMGI +T+YQ RMDTL+ +LYYPQKPL TT
Sbjct: 541  MILGICASIVPFPDHNQSPRNTYQSAMGKQAMGIMLTSYQLRMDTLSNILYYPQKPLATT 600

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
             +ME+L F  LPAG NAIVAI CYSGYNQEDS+IM+Q+SIDRG FRS+FFRSY+DEE K+
Sbjct: 601  HSMEYLKFSDLPAGQNAIVAILCYSGYNQEDSLIMSQTSIDRGLFRSIFFRSYQDEEDKL 660

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-G 890
            G      F +P R  T+ ++HG+Y+KL++DGL  PGTRV+G+D+IIGKTTPI  D  + G
Sbjct: 661  GMRTMGKFEKPTRETTLRLKHGTYEKLEEDGLIAPGTRVTGDDIIIGKTTPIPVDSLELG 720

Query: 891  QAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            Q +  +T+ D S  LR +ETG+VDQV+LTTN DG +FVKVR+RS RIPQIGDKF+SRHGQ
Sbjct: 721  QRTVTHTKLDASKPLRSTETGIVDQVMLTTNGDGFKFVKVRMRSTRIPQIGDKFASRHGQ 780

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGT+GMTY  EDMP+T +G+ PD+I+NPHAIPSRMTIG L+EC++ K+A  MG   DATP
Sbjct: 781  KGTIGMTYRSEDMPFTSQGLVPDLIINPHAIPSRMTIGHLVECLLSKLATLMGTTADATP 840

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 1069
            FTDVTVD IS  L   GYQ RGFE MYNGHTGR+L   +F GPTYYQRLKHMVDDKIHSR
Sbjct: 841  FTDVTVDAISHELFNLGYQSRGFEVMYNGHTGRKLYTQVFFGPTYYQRLKHMVDDKIHSR 900

Query: 1070 GRGPVQILTRQPAEGRSRDGGLRF 1093
             RGP+QILTRQP EGRSRDGGLRF
Sbjct: 901  ARGPLQILTRQPVEGRSRDGGLRF 924


>gi|169806505|ref|XP_001827997.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
 gi|161779137|gb|EDQ31162.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
          Length = 1138

 Score = 1229 bits (3179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1164 (52%), Positives = 822/1164 (70%), Gaps = 47/1164 (4%)

Query: 24   TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDF 83
             +E+ WA+I+++F++KGLVRQQLDSF++F++  MQEI+DE++ I ++  S    G     
Sbjct: 17   NEENNWAIITSFFDQKGLVRQQLDSFNQFVKIKMQEIIDENSIISVK--SIPTAGNS--- 71

Query: 84   AETIYKISFGQI-YLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
             E   K+ FGQI  L  P+ TE DG ++ + P  ARLR+LTY   +++DV K   + G +
Sbjct: 72   IEREIKLYFGQISILGPPINTEIDGTSSKILPNEARLRDLTYWVNMFIDVKKAYYENGIE 131

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
              +V++T    +V  G +P+M++S  C L + ++KD   LGECPYDQGGYFII G EKV+
Sbjct: 132  -VDVSKT---IRVPFGSLPVMVKSELCALKELNDKDNIRLGECPYDQGGYFIITGGEKVI 187

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            +AQE+++TN V++FKK QP  Y Y AE+RS+AE  ++ PS   ++++           + 
Sbjct: 188  VAQERIATNMVHIFKKSQPAPYTYFAEIRSVAEIGSKLPSIFSLKVVKNL--------RV 239

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
            IRA++  ++ +IP++I+FRALGF +DK+IL +I YD  D ++ E L  SLEEA  IQ+Q 
Sbjct: 240  IRASINLVKQDIPVLIIFRALGFNSDKEILSYIQYD-NDKELNEYLLNSLEEASCIQDQL 298

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
             ALD+IGKR A +G  + KRI +AK+IL KE LPH+G  +FCETKKAY+ GY+I+++LL 
Sbjct: 299  SALDFIGKRSAPIGSPKSKRIDFAKQILIKEFLPHIGQQEFCETKKAYFLGYMINKILLV 358

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
              G+R  DDRDHYG KR+DL+GPLL  LF++LF+KL  +   Y+QKCV+N ++ NL   +
Sbjct: 359  ITGKRDVDDRDHYGKKRMDLSGPLLANLFKVLFKKLLTETTKYLQKCVENNREFNLTIGL 418

Query: 443  KAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501
            K+  IT G KY+LATGNWG Q  A  TRAGV+QVL+R  + STLSHLRR+N+PI +EGKL
Sbjct: 419  KSSIITQGFKYALATGNWGHQEKAMSTRAGVAQVLSRYNFLSTLSHLRRVNTPIEKEGKL 478

Query: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561
            A PRQLHN+ WGM+CP ETPEG ACGLVKNL+LM YI+VG ++  I+E LEE G E  EE
Sbjct: 479  AAPRQLHNTHWGMICPIETPEGHACGLVKNLSLMAYISVGKSSNQIIEILEELGVERLEE 538

Query: 562  ISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYT 621
            I        TKI VNG W+G+  DP  +V+ L++ RR  ++++E+ ++ DI+  E++I +
Sbjct: 539  IEYIY---GTKILVNGAWIGVTSDPVRIVQILKKFRRHGEIDSEISIIFDIKENEIKINS 595

Query: 622  DYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMI 681
            D GR  RPLFIVE   LL+ K+DI  L+  +      W DL+  G IE +D EEEE ++I
Sbjct: 596  DAGRPCRPLFIVENNELLVNKQDIEDLKNIKIK----WDDLIKNGKIELLDIEEEEVSLI 651

Query: 682  SMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741
            +M +NDL              YTHCEIHP++ILG+ AS+IPFP HN SPRNTYQSAMGKQ
Sbjct: 652  AMGLNDLKDTN--------KQYTHCEIHPAIILGITASVIPFPTHNPSPRNTYQSAMGKQ 703

Query: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801
            AMGIY TN+  RMDTL+ +L YPQKPLV+T++ME++ F++LP+G N IVAIACYSGYNQE
Sbjct: 704  AMGIYSTNFFKRMDTLSNILCYPQKPLVSTKSMEYIKFKELPSGQNCIVAIACYSGYNQE 763

Query: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 861
            DS+IMNQ+SIDRG FRS  FR+Y D+EK   T V E   + +RS     +  +YD L +D
Sbjct: 764  DSIIMNQASIDRGLFRSFLFRTYSDQEKMKYTGVNEKICKIERSVIFRPKKNNYDILGND 823

Query: 862  GLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTN 920
            G+  PGT+V G+DVIIGK TPI   E     +  Y  +D S  +R +E G +D+V++TT 
Sbjct: 824  GIVCPGTQVYGDDVIIGKMTPILDVEKSTPGNPFYLFKDTSTLIRKTEQGNIDKVIVTTK 883

Query: 921  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
             DG +F KV+VRS+RIPQ+GDKF+SRH QKG VG+T  QEDMP+T +G+ PD+I+NPHAI
Sbjct: 884  -DGYKFTKVKVRSMRIPQMGDKFASRHAQKGVVGITLKQEDMPFTSDGLIPDVIINPHAI 942

Query: 981  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV--TVDNISKALHKCGYQMRGFETMYNG 1038
            PSRMTIG L E ++GK+    G EGDATPF +   T+D ISK L K GYQ RGFE M++G
Sbjct: 943  PSRMTIGHLFEALLGKLTTLNGIEGDATPFANKPQTIDEISKELAKYGYQKRGFEIMHSG 1002

Query: 1039 HTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1098
             TG +L + IF+GPTYYQRLKHMVDDK+H+R RGP+QI+TRQP EGRSR+GGLRFGEMER
Sbjct: 1003 ATGYKLKSQIFIGPTYYQRLKHMVDDKLHARARGPLQIMTRQPVEGRSREGGLRFGEMER 1062

Query: 1099 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHI 1158
            DC+I+HGAS FLKERL D SD Y   VC++CGLI   N    +         + I  ++I
Sbjct: 1063 DCIISHGASAFLKERLMDVSDVYTCGVCDNCGLICNNNCTGCN--------NSTISNINI 1114

Query: 1159 PYACKLLFQELMAMAIAPRMLTKE 1182
            PYA KLL QEL  M I  R+ T+E
Sbjct: 1115 PYAFKLLIQELQGMNIFMRIQTQE 1138


>gi|520515|gb|AAA50228.1| RNA polymerase II, second largest subunit, partial [Helobdella
            stagnalis]
          Length = 859

 Score = 1224 bits (3166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/865 (67%), Positives = 699/865 (80%), Gaps = 13/865 (1%)

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF ++  +KYAY  E+RS  E  +RP  TM+V M++R  T AK    
Sbjct: 1    LIAQEKMATNTVYVFSQKD-SKYAYKTELRSCLEHSSRPSGTMWVNMMARSGTGAKKVGI 59

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A LPYI+ EIPIIIVFRALGFV+D+DILEHI YDF D +MME+++PS++EAF +Q
Sbjct: 60   GQRIVAVLPYIKQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSIDEAFCVQ 119

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
            +Q VAL++IG RG+  GVTR+KRIKYAKEILQKEMLPHVG  DFCET+KAY+ GY++HRL
Sbjct: 120  DQPVALNFIGGRGSRPGVTREKRIKYAKEILQKEMLPHVGISDFCETRKAYFLGYMVHRL 179

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPLL  LFR LFR L++++R Y QK +D GKD NL+
Sbjct: 180  LLAALGRREVDDRDHYGNKRLDLAGPLLAYLFRGLFRNLSKEIRLYAQKFIDRGKDFNLE 239

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK +TIT GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+
Sbjct: 240  LAIKTRTITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRD 299

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLA+PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 300  GKLARPRQLHNTLWGMICPAETPEGCAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 359

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEISP+ I  AT+IFVNGCWVGIHRDPE L+ TL++LRR++D + +EV V+RDIR +E+
Sbjct: 360  LEEISPSAIMDATRIFVNGCWVGIHRDPEQLMNTLKKLRRQMDIIVSEVSVIRDIRDREI 419

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE Q+LL+KKR I  L++RE   +  W DLVA G +EYIDT EEE
Sbjct: 420  RIYTDAGRICRPLLIVENQKLLLKKRHIDLLKEREY-NNYSWQDLVANGVVEYIDTMEEE 478

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T M++MT  D ++        Y  TYTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 479  TVMLAMTPEDFIEK----GGQYCSTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 534

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TNY  RMDTLA+VL+YPQKPLVTTR+ME+L FR+LPAGIN+I AIA Y+G
Sbjct: 535  MGKQAMGVYITNYHVRMDTLAHVLFYPQKPLVTTRSMEYLKFRELPAGINSITAIASYTG 594

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMN+S++DRGFFRS+F+RSY+D E K G   +E F +PDRS   GMR  SYDK
Sbjct: 595  YNQEDSVIMNESAVDRGFFRSVFYRSYKDAESKKGFDQEEVFEKPDRSYVQGMRANSYDK 654

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDG+  PGTRVSG+D ++GKT   P ++DE +GQA RYT+RD S+ +R SETG+V QV
Sbjct: 655  LDDDGIISPGTRVSGDDALVGKTISLPENEDELEGQARRYTKRDCSVFMRKSETGVVGQV 714

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            ++T N DG +F K+RVR+V+ PQIGDKF+SRHGQKGT GM Y QEDMP+T EGITPDII+
Sbjct: 715  MVTINQDGFKFTKIRVRTVKTPQIGDKFASRHGQKGTCGMRYRQEDMPFTAEGITPDIII 774

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHAIPSRMT+G LIEC+ GKVAA+ G+  DATPF D V V  IS  L + GY M G E 
Sbjct: 775  NPHAIPSRMTVGHLIECLQGKVAANRGEIADATPFNDTVNVRKISDVLKEYGYHMHGNEV 834

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLK 1059
            +YNGHTGR++ + IFLGPTYYQRLK
Sbjct: 835  LYNGHTGRKIVSQIFLGPTYYQRLK 859


>gi|55583706|gb|AAV53372.1| RNA polymerase II second largest subunit [Suillus pictus]
          Length = 899

 Score = 1224 bits (3166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/902 (64%), Positives = 711/902 (78%), Gaps = 28/902 (3%)

Query: 205  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 264
            QE+M+TNHVYVF K QP+   ++AE+RS  E   +  S   V+M  R   +  S G  ++
Sbjct: 1    QERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMK 58

Query: 265  ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVA 324
            AT+PYIR +IPI +VFRALG ++D+DILEHICYD QD QM+E+L+P +++ FVIQ+++VA
Sbjct: 59   ATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVA 118

Query: 325  LDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCAL 384
            LD+IG RG T G++R++RI+YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL
Sbjct: 119  LDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYMIHRLLLAAL 178

Query: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
             RR  DDRDH+G KRLDLAGPLL GLFRMLF+KLTRDV  Y+QKCV+  K+ NL  A+K 
Sbjct: 179  ERRELDDRDHFGKKRLDLAGPLLAGLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKH 238

Query: 445  KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
            +TIT+GLKYSLATGNWG Q  A  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AK
Sbjct: 239  QTITNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAK 298

Query: 504  PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
            PRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE +
Sbjct: 299  PRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENA 358

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
             +  P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD 
Sbjct: 359  HSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDA 417

Query: 624  GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTM 680
            GR  RPLFIVE Q+L ++K+ I  L Q    +DG    W  LV  G IE +D EEEET M
Sbjct: 418  GRVCRPLFIVENQQLALQKKHIKWLNQGYREDDGEEFKWEQLVKNGIIELLDAEEEETVM 477

Query: 681  ISMTINDLVQARLH-----PEEAYAD--------------TYTHCEIHPSLILGVCASII 721
            I MT  DL  +RL      P +   D              T+THCEIHPS+ILGVCASII
Sbjct: 478  ICMTPEDLENSRLQSAGIDPHQNDGDYDPAARLKAGINSHTWTHCEIHPSMILGVCASII 537

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+
Sbjct: 538  PFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRE 597

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +
Sbjct: 598  LPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEK 657

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRD 899
            P R  T+ M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD
Sbjct: 658  PTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRD 717

Query: 900  HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 959
             S  L+ +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY Q
Sbjct: 718  VSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQ 777

Query: 960  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 1019
            EDMP+T EGI PDI++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S
Sbjct: 778  EDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVS 837

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
              L + GYQ RG E MY+GHTG++L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTR
Sbjct: 838  TFLRQKGYQSRGLEVMYHGHTGKKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTR 897

Query: 1080 QP 1081
            QP
Sbjct: 898  QP 899


>gi|6606137|gb|AAF19081.1|AF107809_1 DNA-dependent RNA polymerase II RPB140, partial [Peziza quelepidotia]
          Length = 927

 Score = 1223 bits (3165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/928 (62%), Positives = 730/928 (78%), Gaps = 33/928 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK  P+   +VAE+RS  E  +R  S+M ++M  +  ++GG
Sbjct: 1    SEKVLIAQERSAANIVQVFKKAPPSPTPFVAEIRSAVEKGSRLISSMQIKMFGKMDSRGG 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              GQ I++TLPYI+++IP+ IVFRALG + D+DIL H+CYD  D QM+++L+P LEEAFV
Sbjct: 61   Y-GQTIKSTLPYIKSDIPVAIVFRALGVIPDEDILNHVCYDRNDVQMLDMLKPCLEEAFV 119

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ +++ALD+IG+RG++ GV +DKR++YA+EILQKE LPH+   +  ET+KA++ GY++H
Sbjct: 120  IQKREIALDFIGRRGSSSGVAKDKRVRYAREILQKEFLPHISQKEGSETRKAFFLGYMVH 179

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            ++LLCAL R+  DDRDH+G KRLDLAGPLL GLFR LF+KLT+DV  Y+QKCV++ ++ N
Sbjct: 180  QMLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRTLFKKLTKDVYKYLQKCVESSREFN 239

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K+ TIT+GLKYSLATGNWG Q  AA  RAGVSQVLNR T+ASTLSHLR  N+PIG
Sbjct: 240  LTLAVKSTTITNGLKYSLATGNWGEQKKAASARAGVSQVLNRYTFASTLSHLRGTNTPIG 299

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y++VGS A PI++F+ +   
Sbjct: 300  RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYVSVGSPADPIIDFMLQRNM 359

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E  EE  P+  P ATKIFVNG WVGIHRDP  +V+T+++LRR+  +  EV +++DIR +E
Sbjct: 360  EVLEEYEPSRSPNATKIFVNGVWVGIHRDPGFIVRTIQKLRRQNHIGHEVSLIQDIRNRE 419

Query: 617  LRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG----GWHDLVAK 665
             +I+TD GR  RPLF+V+       +  L+++K  I  L+  +   D     GW  L++ 
Sbjct: 420  FKIFTDAGRICRPLFVVDNDPASPRRGELVLQKHHIEKLEDDKDITDDEQRYGWQGLISD 479

Query: 666  GFIEYIDTEEEETTMISMTINDL-----------VQARLHPEE-------AYADTYTHCE 707
            G +EYID EEEET MI MT  DL           +Q  + P +        YA T+THCE
Sbjct: 480  GVVEYIDAEEEETVMIVMTPEDLETSRQFHAGYEIQQEIDPAQRVKAAVNKYAHTWTHCE 539

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY+ RMDT+A +LYYPQKP
Sbjct: 540  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYRERMDTMANILYYPQKP 599

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D+
Sbjct: 600  LGTTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDQ 659

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EK++G  V E+F +P R NT+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ ++
Sbjct: 660  EKRIGMSVVEEFEKPTRGNTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPNQ 719

Query: 888  AQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
             + GQ +++ T+RD S  LR +E G+VDQV++TTN +GL+FVKVR+R+ +IPQIGDKF+S
Sbjct: 720  EELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTTKIPQIGDKFAS 779

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EG
Sbjct: 780  RHGQKGTIGITYRNEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEG 839

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFTDVTVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 840  DATPFTDVTVDSVSKLLREHGYQSRGFEIMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 899

Query: 1066 IHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            IH+R RGPVQILTRQP EGR+RDGGLRF
Sbjct: 900  IHARARGPVQILTRQPVEGRARDGGLRF 927


>gi|89274904|gb|ABD65893.1| RNA polymerase II second largest subunit, partial [Spongipellis
            pachyodon]
          Length = 901

 Score = 1222 bits (3163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/906 (64%), Positives = 719/906 (79%), Gaps = 27/906 (2%)

Query: 210  TNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPY 269
            TNHVYVF K QP+  +++AE+RS  E   +  S   V++  R+  +  S+G  ++AT+PY
Sbjct: 1    TNHVYVFAKGQPSPISHLAEIRSAVEKGGKTISQFQVKLYHRSQER--STGNVMKATIPY 58

Query: 270  IRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIG 329
            I+ +IPI +VFRALG ++D+DILEHICYD QD QM+E+L+P +++ FVIQ+++VALD+IG
Sbjct: 59   IKVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDDGFVIQDREVALDFIG 118

Query: 330  KRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAE 389
             RG T G+ R++R++YA+EILQKEMLPH+   +  E+KKAY+FGY+IHRLLL AL RR  
Sbjct: 119  NRGTTTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERREL 178

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+
Sbjct: 179  DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITN 238

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 239  GLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 298

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N  WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE   +  P
Sbjct: 299  NHHWGMVCPAETPEGQACGLVKNLSLMSCISVGSFSGPVIEFLEEWGLESLEENVHSPTP 358

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
              TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRD R +ELRIYTD GR  R
Sbjct: 359  -TTKVFVNGVWMGVHRDPVNLVKTIKKLRRKDDISPEVSVVRDTRERELRIYTDAGRVCR 417

Query: 629  PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            PLFIVE ++L IKK+ I  L+ ++S  +  W D++ KG IE +D EEEET MI MT  DL
Sbjct: 418  PLFIVEDEQLAIKKKHIRMLEDKDS--NFAWDDMIKKGIIELLDAEEEETAMICMTPEDL 475

Query: 689  VQARL------HPEEAYAD-------------TYTHCEIHPSLILGVCASIIPFPDHNQS 729
              +RL        +E+  D             T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 476  EASRLAGAGMDQEDESEFDPSKRLRTTGSSIHTWTHCEIHPSMILGVCASIIPFPDHNQS 535

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 536  PRNTYQSAMGKQAMGIYLTNFLSRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 595

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ 
Sbjct: 596  VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLR 655

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 907
            M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 656  MKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 715

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E+G+VDQVL+TTNA+G +FVK+ VRS R+PQIG KF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 716  ESGIVDQVLITTNAEGQKFVKIGVRSTRVPQIGGKFASRHGQKGTIGITYRQEDMPFTAE 775

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            GITPDI++NPHAIPSRMTIG L+EC++ K+A   G+EGDATPFT++TV+++S+ L + GY
Sbjct: 776  GITPDIVINPHAIPSRMTIGHLVECLLSKLATLTGQEGDATPFTELTVESVSQYLRQKGY 835

Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1087
            Q RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSR
Sbjct: 836  QSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSR 895

Query: 1088 DGGLRF 1093
            DGGLRF
Sbjct: 896  DGGLRF 901


>gi|45545349|gb|AAS67522.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Taphrina deformans]
          Length = 936

 Score = 1222 bits (3163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/939 (61%), Positives = 728/939 (77%), Gaps = 46/939 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKV+IAQE+ + N V VF+K  P+  +Y+AE+RS  E  ++  S+M +++    +AK G
Sbjct: 1    SEKVIIAQERSAANMVQVFRKAPPSPVSYLAEIRSAIEKGSKLISSMQIKL---KAAKVG 57

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            S+GQ I ATLPY++T+IPI+IVFRALG V D+DIL+HICYD +D QM+E+L+P +EEAFV
Sbjct: 58   STGQTIAATLPYVKTDIPIVIVFRALGVVPDRDILDHICYDAKDRQMLEMLKPCIEEAFV 117

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++VALD+IGKRG+ +GVT++KR++YA++ILQKEMLPH+ T +  ET+KA++ GY++H
Sbjct: 118  IQDREVALDFIGKRGSAIGVTKEKRLRYAQDILQKEMLPHITTSEGFETRKAFFLGYMVH 177

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLLCAL RR  DDRDH+G KR+DLAGPLL GLFRMLF++LT+D+R Y+ KCVD+GK+ N
Sbjct: 178  RLLLCALERRDPDDRDHFGKKRIDLAGPLLAGLFRMLFKRLTKDIRQYMTKCVDSGKEFN 237

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K  TIT+GL+YSLATG WG Q      R GVSQVLNR TYASTLSHLRR N+PIG
Sbjct: 238  LPLAVKHTTITNGLRYSLATGTWGDQKKQMNARVGVSQVLNRYTYASTLSHLRRTNTPIG 297

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y++VGSA+ PI+EFLEEWG 
Sbjct: 298  RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYVSVGSASAPIIEFLEEWGM 357

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E+ E+ +P+    +TKIFVNG W+G+H DP  LVKTLR LRR+ D++ EV VVRDIR KE
Sbjct: 358  ESLEDYNPSAGRPSTKIFVNGVWLGVHSDPGHLVKTLRSLRRKTDISPEVSVVRDIREKE 417

Query: 617  LRIYTDYGRCSRPLFIV---------EKQRLLIKKRDIIALQ-QRESPEDG---GWHDLV 663
            LR++TD GR  RPLF+V         E   L++KK  +  +   +E PED    GW  ++
Sbjct: 418  LRLFTDAGRVCRPLFVVHDDESAEKSEAGSLVLKKEHVQRMAYSKEHPEDDEKFGWAQVL 477

Query: 664  AKGFIEYIDTEEEETTMISMTINDL------------------------VQARLHPEEAY 699
            + G  EY+D EEEET MI+MT +DL                           RL P    
Sbjct: 478  SNGIAEYLDAEEEETVMIAMTPDDLEATKHMMAGYVEPEDEKERKIAAEAAKRLRPAVNK 537

Query: 700  AD-TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            A   +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT+A
Sbjct: 538  AQHLWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQVRMDTMA 597

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
             +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQSSIDRG FRS
Sbjct: 598  NILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSMIMNQSSIDRGLFRS 657

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            +F+R Y+D E+K+     ++F +P R  TM M+  +YDKL+DDGL  PGTRVSGEDVI+G
Sbjct: 658  MFYRVYQDSEEKIDMNQAQEFEKPTRETTMKMKRSTYDKLEDDGLVAPGTRVSGEDVIVG 717

Query: 879  KTTPISQDE----AQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 934
            KT  + +DE       +++  T+RD S  LR +E G++D+V+++TN+DG +FVKVR+R+ 
Sbjct: 718  KTAGLLKDENLADLASRSATQTKRDVSTQLRSTEAGIIDKVMVSTNSDGHKFVKVRIRAT 777

Query: 935  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 994
            +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMT+  L+EC +
Sbjct: 778  KIPQIGDKFASRHGQKGTIGVTYRNEDMPFTSEGIVPDLIINPHAIPSRMTVAHLVECQL 837

Query: 995  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1054
             KV +  G EGDATPFTDVTV+ +S  L + GY  RGFE MYNGHTGR+L A +FLGPTY
Sbjct: 838  SKVGSLSGFEGDATPFTDVTVEAVSNNLREQGYHSRGFEIMYNGHTGRKLMAQVFLGPTY 897

Query: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            YQRLKH+VDDKIH+R RGP+QILTRQP EGR+RDGGLRF
Sbjct: 898  YQRLKHLVDDKIHARARGPMQILTRQPVEGRARDGGLRF 936


>gi|55584694|gb|AAV53578.1| RNA polymerase II second largest subunit [Boletellus projectellus]
          Length = 899

 Score = 1222 bits (3163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/902 (64%), Positives = 714/902 (79%), Gaps = 28/902 (3%)

Query: 205  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 264
            QE+M+TNHVYVF K QP+   ++AE+RS  E   +  S   V+M  R   +  S G  ++
Sbjct: 1    QERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMK 58

Query: 265  ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVA 324
            AT+PYIR +IPI +VFRALG ++D+DILEHICYD QD+QM+E+L+P +++ FVIQ+++VA
Sbjct: 59   ATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEVLKPCIDDGFVIQDREVA 118

Query: 325  LDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCAL 384
            LD+IG RG T G++R++RI+YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL
Sbjct: 119  LDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAAL 178

Query: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
             RR  DDRDH+G KRLDLAGPLL  LFRMLF+KLT+DV  Y+QKCV+  K+ NL  A+K 
Sbjct: 179  ERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDVYRYLQKCVETHKEFNLSLAVKH 238

Query: 445  KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
            +TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AK
Sbjct: 239  QTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAK 298

Query: 504  PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
            PRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE +
Sbjct: 299  PRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENA 358

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
             +  P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD 
Sbjct: 359  HSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDA 417

Query: 624  GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTM 680
            GR  RPLFIVE Q+L ++K+ I  L Q    +DG    W  LV  G IE +D EEEET M
Sbjct: 418  GRVCRPLFIVENQQLALQKKHIKWLNQGYRDDDGEEFKWEQLVKSGIIELLDAEEEETVM 477

Query: 681  ISMTINDLVQARL-----HPEEAYAD--------------TYTHCEIHPSLILGVCASII 721
            ISMT  DL  +RL     +P++  AD              T+THCEIHPS+ILGVCASII
Sbjct: 478  ISMTPEDLENSRLQSAGINPQDHDADHDPAARLKAGITAHTWTHCEIHPSMILGVCASII 537

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+
Sbjct: 538  PFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRE 597

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +
Sbjct: 598  LPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEK 657

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRD 899
            P R  T+ M+HG+YDK++DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD
Sbjct: 658  PTRDTTLRMKHGTYDKIEDDGLIAPGTNVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRD 717

Query: 900  HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 959
             S  L+ +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY Q
Sbjct: 718  VSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQ 777

Query: 960  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 1019
            EDMP+T EGI PD+I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S
Sbjct: 778  EDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVS 837

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTR 1079
              L + GYQ RG E MY+GHTG++L A I+LGPTYYQRLKHMVDDKIHSR RGPVQILTR
Sbjct: 838  TFLRQKGYQSRGLEVMYHGHTGKKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTR 897

Query: 1080 QP 1081
            QP
Sbjct: 898  QP 899


>gi|120561261|gb|ABM27015.1| RNA polymerase II second largest subunit, partial [Allomyces
            macrogynus]
          Length = 896

 Score = 1221 bits (3160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/908 (63%), Positives = 712/908 (78%), Gaps = 31/908 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKV+IAQE+ +TN V+VF K  P+   + AE+RS AE   +  S+  V+M         
Sbjct: 1    SEKVIIAQERTATNTVFVFSKPPPSAVLFQAEIRSQAEDGPKTLSSFIVKM--------- 51

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            S  Q I A+LPYI+ +IPI+++FRALG VAD+DILE ICYDF D QM+E+L+PS++ AF 
Sbjct: 52   SRDQNITASLPYIQQDIPIMVLFRALGLVADRDILERICYDFSDDQMLEMLKPSIDNAFT 111

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ ++VALD+IGKRG  +G+TRDKRI+YA ++L++E+LPH+G    C+T+K+Y+ GY++H
Sbjct: 112  IQEREVALDFIGKRGRNIGLTRDKRIRYAHDLLERELLPHIGITPGCQTRKSYFIGYMVH 171

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL ALGRR  DDRDH+G KRLDLAGPLL  LFR  F+KLT+DV  Y   C++ G++ N
Sbjct: 172  RLLLAALGRRQVDDRDHFGKKRLDLAGPLLASLFRTFFQKLTKDVSRYFTVCIERGREFN 231

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  AI + TIT+GL+Y+LATGNWG Q     TRAGVSQVLNR T+ASTLSHLRRLN+PIG
Sbjct: 232  LNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTPIG 291

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            REGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM YI+VGSA+ PILEFLEEW T
Sbjct: 292  REGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASGPILEFLEEWTT 351

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            EN EEI+ + I   TK+FVNG WVGIHR P+ LV+TL  LRR  D+  EV VVRD+R  E
Sbjct: 352  ENLEEITASAIGSNTKVFVNGSWVGIHRQPDSLVQTLISLRRSGDIMPEVSVVRDVRDNE 411

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEE 676
            LRIYTD GR  RPLFIV +Q+ L+ +RD +A   R    + GW +L+A G +EY+DTEEE
Sbjct: 412  LRIYTDAGRICRPLFIVNEQQQLVLRRDHVA---RLEVGEWGWEELLANGIVEYLDTEEE 468

Query: 677  ETTMISMTINDLVQARLHP--EEAYADT---------------YTHCEIHPSLILGVCAS 719
            ETTMI MT +DL ++R  P  +++  D                ++HCEIHPS+ILG+CAS
Sbjct: 469  ETTMICMTPDDLAESRGDPIPDKSKLDKTARLKSRKAGDVCKQWSHCEIHPSMILGICAS 528

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q RMDTLA +LYYPQKPLV TR+M++L F
Sbjct: 529  IIPFPDHNQSPRNTYQSAMGKQAMGLYLTNFQLRMDTLANILYYPQKPLVATRSMKYLRF 588

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAG NA+VAIA YSGYNQEDS+IMNQSSIDRG FRS+++R+Y D+EKK G    E F
Sbjct: 589  RELPAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGLFRSIYYRAYMDQEKKSGFSDVETF 648

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRYTRR 898
             +P R  T+ +RHGSYDK+++DGL  PGTRV+G+D+IIGKT P+  D ++ G  +  T++
Sbjct: 649  EKPARETTLKLRHGSYDKIEEDGLVAPGTRVTGDDIIIGKTAPLPPDTSEMGARTTQTKK 708

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S SL+ +E G+VD V+LTTN DG +FVKVRVRS R+PQ+GDKF+SRHGQKGTVGMTY 
Sbjct: 709  DVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTRVPQMGDKFASRHGQKGTVGMTYR 768

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
            QEDMP++ +G+TPD+IVNPHAIPSRMTIG L+EC++ KV +  G EGDATPFTD+TV  I
Sbjct: 769  QEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLLSKVGSLTGTEGDATPFTDITVQEI 828

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
            +  L  CGYQ RGFE MYNGHTG++L A +F GPTYYQRLKHMVDDKIHSR RGP+QILT
Sbjct: 829  ADRLRSCGYQQRGFEIMYNGHTGKKLAAQVFFGPTYYQRLKHMVDDKIHSRARGPLQILT 888

Query: 1079 RQPAEGRS 1086
            RQP EGRS
Sbjct: 889  RQPVEGRS 896


>gi|418204386|gb|AFX61747.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            aggregata]
          Length = 1109

 Score = 1220 bits (3157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1113 (54%), Positives = 777/1113 (69%), Gaps = 83/1113 (7%)

Query: 18   DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            D++E IT ED W VIS++FE KGLV QQLDSFDEF   TMQE+V+E   + +      + 
Sbjct: 1    DDDETITTEDCWTVISSFFETKGLVSQQLDSFDEFATVTMQELVEEQGQVTLDQTLNPDE 60

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
             +        Y++ FG + L++P MTE DG T+ + P+ ARLRNLTYS+P+Y+ + KR+ 
Sbjct: 61   DEVDPVVVRRYELKFGTVSLARPSMTEGDGATSVMLPQEARLRNLTYSSPMYLKIRKRI- 119

Query: 138  KKGHDGEEVTETQDFT--------------------------------KVFIGKVPIMLR 165
                +G E   +Q                                    +FIGK+P+ML+
Sbjct: 120  ---SEGREKLLSQRDEDEEEEEDEDLRAKGTYLQWAEKPLKEDEPAEESIFIGKMPVMLK 176

Query: 166  SSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 225
            S YC L   +E+ L    ECPYD GGYFIINGSEKVLIAQE+ + N V +F+K  P+   
Sbjct: 177  SRYCILKDLNEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQIFQKAPPSPTP 236

Query: 226  YVAEVRSMAESQNRPPSTMFVRMLSRT----SAKGG--SSGQYIRATLPYIRTEIPIIIV 279
            Y+AE+RS  E  +R  S + +++ S+T    SA  G  S+G  I++TLPYIR +IPI+IV
Sbjct: 237  YIAEIRSAVEKGSRILSQLSIKLFSKTFKATSAATGRDSNGPMIKSTLPYIRDDIPIMIV 296

Query: 280  FRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR 339
            FRALG V+D+DIL HICYD  D  M+ELL+P+++    IQ ++VALD+I KRG    + +
Sbjct: 297  FRALGVVSDEDILNHICYDPNDLPMLELLKPTIQTCLCIQEREVALDFIAKRGTHQSMAQ 356

Query: 340  DKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKR 399
            DKRI++A++I+QKE LPH+   +  ET+KA++FGY+IH+LL CALGRR  DDRDH+G KR
Sbjct: 357  DKRIRFARDIMQKEFLPHISQSEGSETRKAFFFGYMIHKLLQCALGRRDVDDRDHFGKKR 416

Query: 400  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 459
            LDLAGPLL GLFR LF +LT+D+  YVQ+CV+  + ++L   IK  T++ GLKY+LATGN
Sbjct: 417  LDLAGPLLAGLFRTLFMRLTKDLYRYVQRCVETNRQLHLNIGIKTATLSGGLKYALATGN 476

Query: 460  WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
            WG Q  AA ++AGVSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPA
Sbjct: 477  WGEQKKAASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 536

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNL+LM  ITVGS    I+EFL     E  EE  P V P  TK+F+NG 
Sbjct: 537  ETPEGQACGLVKNLSLMCTITVGSGTAGIIEFLISQHMEVLEEFEPQVSPDVTKVFLNGV 596

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-- 636
            WVG+HRDP  LV  ++ LRR+  +  E  +VRDIR +E +I+TD GR  RPLF+V+    
Sbjct: 597  WVGVHRDPSHLVSKVQNLRRQNLLPYETSLVRDIRDREFKIFTDAGRVCRPLFVVDNNPS 656

Query: 637  -----RLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEETTM 680
                  L + K  I  L+  +       PED      GW  LV  G IEY+D EEEET M
Sbjct: 657  SERCGSLALTKDHIRKLEADKDLPPDLDPEDRRQRYYGWQGLVNSGVIEYVDAEEEETIM 716

Query: 681  ISMTINDL-----VQARLHPEE-AYAD--------------TYTHCEIHPSLILGVCASI 720
            I MT  DL     V+    PE+ +Y D              +YTHCEIHPS+ILG+CASI
Sbjct: 717  IVMTPEDLDFQKQVRQGARPEDDSYLDPNRRVRNPFTNKVHSYTHCEIHPSMILGICASI 776

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T++ +LYYPQKPL TTR+ME L FR
Sbjct: 777  IPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMSNILYYPQKPLATTRSMEFLKFR 836

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
            +LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R Y D EKK+G  V E F 
Sbjct: 837  ELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDSEKKIGVAVVEKFE 896

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR-YTRR 898
             P +  T+ M++  YDKLD DG+A  G  VSG D+IIGKT P++ + E  GQ ++ +T+ 
Sbjct: 897  YPSKEETLRMKNHPYDKLDHDGIAAVGMHVSGNDIIIGKTAPLAPESEELGQRTKQHTKL 956

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  LR +E G VDQVL++T++D L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY 
Sbjct: 957  DVSTQLRSTENGHVDQVLVSTSSDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYC 1016

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
            QEDMP+T EG+TPD+I+NPHAIPSRMTI  LIEC + KV+A  G EGDATPFTDVTVD++
Sbjct: 1017 QEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEGDATPFTDVTVDSV 1076

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            S+ L + GYQ RGFE MYNGHTGR+L A +FLG
Sbjct: 1077 SRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLG 1109


>gi|6606091|gb|AAF19058.1|AF107786_1 DNA-dependent RNA polymerase II RPB140, partial [Neolecta vitellina]
          Length = 930

 Score = 1220 bits (3156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/930 (62%), Positives = 719/930 (77%), Gaps = 34/930 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKV+IAQE+ + N V VF K  P+  ++VAEVRS  E  +R  S++ +++L        
Sbjct: 1    SEKVIIAQERSAANTVQVFTKSAPSPLSHVAEVRSAVEKGSRLISSLQIKLLRNPQKTSV 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            S+G+ I+ATLPYI+ +I I+IVFRALG +AD++ILEHIC+D  D QM+ELL+P +EEAFV
Sbjct: 61   SNGRLIKATLPYIKDDIDIVIVFRALGVLADREILEHICFDPNDHQMLELLKPCIEEAFV 120

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ + +ALDYIGKRG T G++RD+RI++A+EI+QKE+LPHV   +  E++KA++ GY++H
Sbjct: 121  IQEKDLALDYIGKRGQTTGLSRDRRIRHAREIMQKELLPHVSQTEGYESRKAFFLGYMVH 180

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL AL RR +DDRDH+G KRLDLAGPLL  LFRMLF+KL +DV  Y+QKCV+N ++ N
Sbjct: 181  RLLLVALERREQDDRDHFGKKRLDLAGPLLANLFRMLFKKLYKDVYRYMQKCVENNREFN 240

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+KA TIT GLKYSLATGNWG Q  AA  + GVSQVLNR T+ASTLSHLRR N+PIG
Sbjct: 241  LTLAVKAPTITQGLKYSLATGNWGEQKKAAQAKVGVSQVLNRYTFASTLSHLRRTNTPIG 300

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHNS WG++CPAETPEGQACGLVKNLALM YI+VG  + P++EFLEEWG 
Sbjct: 301  RDGKIAKPRQLHNSHWGLVCPAETPEGQACGLVKNLALMSYISVGGPSAPLIEFLEEWGM 360

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E+ E+ SP+  P  TKIFVNG W+G+HRD   LV T+R LRRRVD++ E+ +VRDIR +E
Sbjct: 361  ESLEDYSPSSTPNTTKIFVNGVWLGVHRDAGSLVNTVRNLRRRVDISPEITIVRDIRERE 420

Query: 617  LRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQR----ESPEDGGWH--DLV 663
            LR++TD GR  RPLFIV+       K  L+++++ +  + +     E P+   W+   L+
Sbjct: 421  LRLFTDAGRVMRPLFIVDNDEHSPRKNFLMLQRQHVETINEHKDNPEIPDHERWNFSKLI 480

Query: 664  AKGFIEYIDTEEEETTMISMTINDLVQARLH------------------PEEAYADTYTH 705
              G IEYID EEEET MI+MT  DL   R                    P       YTH
Sbjct: 481  ENGIIEYIDAEEEETAMIAMTRKDLESWRKMKEGFQIEEEFDPASRVEPPPNPNIAMYTH 540

Query: 706  CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 765
            CEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT+A +LYYPQ
Sbjct: 541  CEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQLRMDTMANILYYPQ 600

Query: 766  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 825
            KPL TTR+ME+L FR LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+F+R Y 
Sbjct: 601  KPLATTRSMEYLKFRDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMFYRCYN 660

Query: 826  DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
            D+EKK+G  V E+F +P R  T+ ++HG+Y+KL++DGL  PG RVSGED+IIGKT PIS 
Sbjct: 661  DQEKKIGMQVMEEFEKPTRQTTLRLKHGTYEKLEEDGLIAPGIRVSGEDIIIGKTAPISP 720

Query: 886  D--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
            D  E   + S +T+RD S  LR +E G+VD V++TTN +GL+FVKVR+RS R+PQIGDKF
Sbjct: 721  DTQELGQRTSHHTKRDVSTPLRSTENGIVDHVVVTTNQEGLKFVKVRMRSTRVPQIGDKF 780

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            +SRHGQKGT+G+TY  EDMP++ +G+ PD+I+NPHAIPSRMT+  LIEC + KV+A  G 
Sbjct: 781  ASRHGQKGTIGITYRHEDMPFSAQGVVPDLIINPHAIPSRMTVAHLIECQLSKVSAMGGY 840

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            EGDATPFT+VTV+ +S+ L   G+Q RGFE MYNGHTG++L A +FLGPTYYQRLKHMVD
Sbjct: 841  EGDATPFTEVTVEQVSQQLRNQGFQSRGFEVMYNGHTGKKLMAQVFLGPTYYQRLKHMVD 900

Query: 1064 DKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            DKIH+R RGPVQILTRQP EGRSRDGGLRF
Sbjct: 901  DKIHARARGPVQILTRQPVEGRSRDGGLRF 930


>gi|384096572|gb|AFH66782.1| RNA polymerase II second largest subunit, partial [Rhizidium
            endosporangiatum]
          Length = 911

 Score = 1220 bits (3156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/914 (64%), Positives = 717/914 (78%), Gaps = 24/914 (2%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+M+TNHVYVF K QP  Y++  E+RS+AE  ++  ST+F++M+     K  
Sbjct: 1    SEKVLIAQERMATNHVYVFAKAQPATYSFSCEIRSLAERGSKVASTLFIKMMHAKGEKA- 59

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + GQ IR +LPYI+T++PI IVFRALG VAD++I+E ICYDF D  M+ELLRP +EEAFV
Sbjct: 60   AGGQVIRTSLPYIKTDVPIFIVFRALGVVADQEIMEKICYDFNDHPMLELLRPCIEEAFV 119

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+Q+VAL +IG RG T+GV+++KRIKYA++ILQKEMLPHVGT    ET+KAY+FGY+IH
Sbjct: 120  IQSQEVALTWIGNRGNTIGVSQEKRIKYAQDILQKEMLPHVGTKAHTETRKAYFFGYMIH 179

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL AL RR  DDRDH+G KRLDLAG LL GLFRMLFRKLT+DV   +QKC++  ++ N
Sbjct: 180  RLLLAALERREFDDRDHFGKKRLDLAGALLSGLFRMLFRKLTKDVSRTLQKCMETNRNFN 239

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            ++ A+ A  I +GLKYSLATGNWG Q+ A   RAGV QVLNR T+ASTLSHLRR+N+PIG
Sbjct: 240  IKTAVDANIIKNGLKYSLATGNWGEQSKAMQARAGVGQVLNRYTFASTLSHLRRMNTPIG 299

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            REGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  ITVG    P +EFLEEW  
Sbjct: 300  REGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAVITVGCPTLPFVEFLEEWTM 359

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            EN EE+ P+ IP ATK+F+NG WVG+HRDP+MLV TLR LRRRVDVN EV +VRD+   E
Sbjct: 360  ENLEEVGPSTIPDATKVFLNGVWVGVHRDPDMLVNTLRELRRRVDVNAEVSIVRDVAENE 419

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIK--KRDIIALQQRESPEDGGWHDLVAKGFIEYIDTE 674
            LR+YTD GR  RPLFIV+ + + +K  K  I  L  +E+P    ++DL+ +G I  IDTE
Sbjct: 420  LRLYTDAGRICRPLFIVDNETMTLKLTKEHIERLNDKETP--ASFNDLLCEGVIGLIDTE 477

Query: 675  EEETTMISMTINDLVQAR--LH----------PEEAYA----DTYTHCEIHPSLILGVCA 718
            EEET MI+MT  DL  +R  +H           E A +      +THCEIHPS+ILG+CA
Sbjct: 478  EEETIMIAMTPEDLDMSRRIVHGLPVVRHQGITERAKSIPTVHNWTHCEIHPSMILGICA 537

Query: 719  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 778
            SIIPFPDHNQSPRN YQSAMGKQAMGI+ TN+  RMDT+  +L+YPQKPL  TR+ME+L 
Sbjct: 538  SIIPFPDHNQSPRNCYQSAMGKQAMGIFNTNFHQRMDTMTNILFYPQKPLAATRSMEYLR 597

Query: 779  FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 838
            FR+LPAG NAIVAI CYSGYNQEDS+IMNQSSIDRG FRSL++R Y D EKK G    E 
Sbjct: 598  FRELPAGQNAIVAIGCYSGYNQEDSLIMNQSSIDRGLFRSLYYRVYMDTEKKEGLTTTET 657

Query: 839  FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYT 896
            F +P R +T+ +RHG+Y+KLD+DG+  PG RVSGED+IIGKT PI  D E  GQ  S +T
Sbjct: 658  FEKPTRDSTLRLRHGTYEKLDEDGIIAPGVRVSGEDIIIGKTVPIPLDSEELGQRTSTHT 717

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            +RD S  L+ +E+G+VDQV++TTN DG +FVKVRVRSVR+PQIGDKF+SRHGQKGT G+T
Sbjct: 718  KRDASTPLKSTESGIVDQVVVTTNHDGFKFVKVRVRSVRVPQIGDKFASRHGQKGTCGIT 777

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y  EDMP+T +GITPDIIVNPHAIPSRMTIG L+EC++GKVA   G+EGDATPFT V V 
Sbjct: 778  YRMEDMPFTRDGITPDIIVNPHAIPSRMTIGHLVECLLGKVATMTGREGDATPFTSVNVA 837

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
            +IS  L   G+Q RGFE +YNGHTGR+L A +F GPTYYQRLKHMVDDKIH R RGP+QI
Sbjct: 838  DISNELASYGFQQRGFEVLYNGHTGRKLNAQLFFGPTYYQRLKHMVDDKIHLRARGPMQI 897

Query: 1077 LTRQPAEGRSRDGG 1090
            L RQP EGRSRDGG
Sbjct: 898  LVRQPVEGRSRDGG 911


>gi|68131892|gb|AAY85224.1| RNA polymerase II second largest subunit [Nepenthes maxima]
          Length = 667

 Score = 1218 bits (3152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/667 (90%), Positives = 618/667 (92%), Gaps = 37/667 (5%)

Query: 108 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
           ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV+E QDFTKVFIGKVPIMLRSS
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVSEAQDFTKVFIGKVPIMLRSS 60

Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
           YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61  YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG-QYIRATLPYIRTEIPIIIVFRALGFV 286
           AEVRSMAE+QNRPPSTMFVRMLSR  AKGG S  QYI+ATLPYIRTEIPIII+FRALGFV
Sbjct: 121 AEVRSMAENQNRPPSTMFVRMLSRAGAKGGGSSGQYIKATLPYIRTEIPIIIIFRALGFV 180

Query: 287 ADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYA 346
           ADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR+KRIKYA
Sbjct: 181 ADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYA 240

Query: 347 KEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 406
           KEILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPL
Sbjct: 241 KEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPL 300

Query: 407 LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA 466
           LGGLFRMLFRKLTRDVRAYVQKCVD GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA
Sbjct: 301 LGGLFRMLFRKLTRDVRAYVQKCVDQGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA 360

Query: 467 GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ-- 524
           GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ  
Sbjct: 361 GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAC 420

Query: 525 ----------------------------------ACGLVKNLALMVYITVGSAAYPILEF 550
                                             ACGLVKNLALMVYITVGSAAYPILEF
Sbjct: 421 GLVKNLALMVYITVGSAAYPILEFLEEWSTENFEACGLVKNLALMVYITVGSAAYPILEF 480

Query: 551 LEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVR 610
           LEEW TENFEEISPAVIPQATKIFVNGCWVGIHRDP++LVKTLR+LRRRVDVNTEVGVVR
Sbjct: 481 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRDPDLLVKTLRQLRRRVDVNTEVGVVR 540

Query: 611 DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEY 670
           DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRESP++GGWHDLVAKGFIEY
Sbjct: 541 DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDEGGWHDLVAKGFIEY 600

Query: 671 IDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 730
           IDTEEEETTMISMTINDL+ ARL+PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 601 IDTEEEETTMISMTINDLITARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 660

Query: 731 RNTYQSA 737
           RNTYQSA
Sbjct: 661 RNTYQSA 667


>gi|89274900|gb|ABD65891.1| RNA polymerase II second largest subunit, partial [Pycnoporus sp.
            ZW02.30]
          Length = 896

 Score = 1218 bits (3152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/899 (64%), Positives = 716/899 (79%), Gaps = 26/899 (2%)

Query: 213  VYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRT 272
            VYVF K QP+  +++AE+RS  E   +  S   V++  R+  +  S G  ++AT+PYI+ 
Sbjct: 1    VYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRSQER--SLGNVMKATIPYIKV 58

Query: 273  EIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRG 332
            +IPI +VFRALG ++D+DILEHICYD QD QM+E+L+P ++E FVIQ++++ALDYIG RG
Sbjct: 59   DIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGNRG 118

Query: 333  ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDR 392
             T G+ R++R++YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDR
Sbjct: 119  TTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDR 178

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLK
Sbjct: 179  DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLK 238

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 239  YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 298

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 299  WGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CT 357

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 358  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDPGRVCRPLF 417

Query: 632  IVEKQRLLIKKRDIIAL-QQRESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 689
            IVE Q+LL++KR I  L + +E PE +  W +L+  G IE +D EEEET MI MT  DL 
Sbjct: 418  IVENQQLLLQKRHIENLVRGKEDPEFEYKWDNLIKDGVIELLDAEEEETVMICMTPEDLE 477

Query: 690  QARL-------HPEEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
             +RL       H +  +           A T+THCEIHPS+ILGVCASIIPFPDHNQSPR
Sbjct: 478  NSRLQAAGIDPHADAEFDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPR 537

Query: 732  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
            NTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVA
Sbjct: 538  NTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVA 597

Query: 792  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 851
            I CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+
Sbjct: 598  ILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMK 657

Query: 852  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSET 909
            HG+YDKL++DGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E+
Sbjct: 658  HGTYDKLEEDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTES 717

Query: 910  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
            G+VDQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI
Sbjct: 718  GIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGI 777

Query: 970  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1029
            TPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ 
Sbjct: 778  TPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKGYQS 837

Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
            RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRD
Sbjct: 838  RGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRD 896


>gi|6606139|gb|AAF19082.1|AF107810_1 DNA-dependent RNA polymerase II RPB140 [Morchella elata]
          Length = 927

 Score = 1217 bits (3150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/930 (61%), Positives = 732/930 (78%), Gaps = 37/930 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK  P+   YVAE+RS  E  +R  S+M +++ S+  A+GG
Sbjct: 1    SEKVLIAQERSAANIVQVFKKALPSPTPYVAEIRSAVEKGSRLISSMQIKLYSKGEARGG 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
             +   I++TLPYI+++IPI+IVFRALG V+D+DIL H+CYD  DTQM+E+++P +EEAFV
Sbjct: 61   YNAT-IKSTLPYIKSDIPIVIVFRALGVVSDEDILNHVCYDRNDTQMLEMMKPCIEEAFV 119

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++VALD+IGKRG++ G+ ++KRI+YA++I+QKE+LPH+   +  ET+KA++ GY++H
Sbjct: 120  IQDREVALDFIGKRGSSQGINKEKRIRYARDIMQKELLPHISQSEGSETRKAFFLGYMVH 179

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            R+L CAL RR  DDRDH+G KRLDLAGPLL GLFR L++KLT+DV  Y++KCV+ GKD N
Sbjct: 180  RMLQCALERREVDDRDHFGKKRLDLAGPLLAGLFRTLWKKLTKDVYKYLEKCVETGKDFN 239

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K+ TIT+GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIG
Sbjct: 240  LTLAVKSNTITNGLKYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIG 299

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM YIT+G+  YP+++FL     
Sbjct: 300  RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYITIGTPGYPLVDFLSSNDM 359

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E  EE  P   P ATK+FVNG WVG HRDP ML K ++ +RR+  VN EV ++RDIR +E
Sbjct: 360  ELLEEYEPQRSPNATKVFVNGVWVGTHRDPLMLHKVVQDVRRQGVVNHEVSIIRDIRDRE 419

Query: 617  LRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRES---PEDGGWHDLVAKG 666
             +I+TD GR  RPLF+++       + +L+++K  I  L+   +    +  GW  L+  G
Sbjct: 420  FKIFTDAGRVCRPLFVIDNDPRSERRGQLVLQKEHIEKLEDDHALPMEDRFGWEGLLFGG 479

Query: 667  FIEYIDTEEEETTMISMTINDL---------------------VQARLHPEEAYADTYTH 705
             +EY+D EEEET MI MT  DL                     V+A ++P  A+  T+TH
Sbjct: 480  TVEYLDAEEEETVMIVMTPEDLDMSRQMQLGYEEPKDEFSAKRVKAPINPHTAH--TWTH 537

Query: 706  CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 765
            CEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQ
Sbjct: 538  CEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFAERMDTMANILYYPQ 597

Query: 766  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 825
            KPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+RSY 
Sbjct: 598  KPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYM 657

Query: 826  DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
            D+EK++G  V E+F +P R+NT+ ++HG+YDKLD+DGL  PG RVSGED+IIGKT PI+ 
Sbjct: 658  DQEKRIGMQVVEEFEKPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPIAP 717

Query: 886  D-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
            D +  GQ  ++ T+RD S  LR +E G+VDQV+LTTNA+GL+FVKVR+R+ +IPQIGDKF
Sbjct: 718  DVDEMGQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKF 777

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            +SRHGQKGTVG+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G 
Sbjct: 778  ASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGF 837

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            EGDATPFTDVTV+++S  L + GYQ RGFE MYNG+TGR+L   +FLGPTYYQRL+HMVD
Sbjct: 838  EGDATPFTDVTVESVSTLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPTYYQRLRHMVD 897

Query: 1064 DKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            DKIH+R RGPVQILTRQP EGR+RDGGLRF
Sbjct: 898  DKIHARARGPVQILTRQPVEGRARDGGLRF 927


>gi|40643994|emb|CAD90166.1| DNA-directed RNA polymerase II largest subunit [Gardenia sp. Oxelman
            2319]
          Length = 627

 Score = 1217 bits (3149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/627 (90%), Positives = 606/627 (96%)

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNG
Sbjct: 1    AETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNG 60

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 637
            CWVGIHR+P++LV+TLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQR
Sbjct: 61   CWVGIHRNPDLLVRTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQR 120

Query: 638  LLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 697
            LLIKK+DI+ALQQRE  ++ GWHDLVAKG+IEY+DTEEEETTMISMTINDL+ +RL+P+E
Sbjct: 121  LLIKKKDILALQQREYTDEFGWHDLVAKGYIEYVDTEEEETTMISMTINDLMNSRLNPDE 180

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
            AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ RMDTL
Sbjct: 181  AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGMYITNYQLRMDTL 240

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            AYVLYYPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSSIDRGFFR
Sbjct: 241  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFR 300

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            S+FFRSYRDEEKKMGTLVKE+FG P+R NTMGMRHGSYDKLD DG APPGTRVSGEDVII
Sbjct: 301  SIFFRSYRDEEKKMGTLVKEEFGSPNRENTMGMRHGSYDKLDADGFAPPGTRVSGEDVII 360

Query: 878  GKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            GKTT + QDEAQGQASRYTRRDHS SLRHSE+G+VDQV LTTNADGLRFVKVR+RSVRIP
Sbjct: 361  GKTTSLPQDEAQGQASRYTRRDHSTSLRHSESGIVDQVALTTNADGLRFVKVRMRSVRIP 420

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI+PDIIVNPHAIPSRMTIGQLIECIMGKV
Sbjct: 421  QIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGISPDIIVNPHAIPSRMTIGQLIECIMGKV 480

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE +YNGHTGR +  +IF+GPTYYQR
Sbjct: 481  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERVYNGHTGRIMGDLIFMGPTYYQR 540

Query: 1058 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQ 1117
            LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQ
Sbjct: 541  LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQ 600

Query: 1118 SDAYRVHVCEHCGLIAIANLKKNSFEC 1144
            SDAYRVH+CEHCGLIA+A  KK+SFEC
Sbjct: 601  SDAYRVHICEHCGLIALACFKKSSFEC 627


>gi|67810650|gb|AAY82001.1| RNA polymerase II second largest subunit [Sphagnum sp. JL-2005]
          Length = 704

 Score = 1217 bits (3148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/659 (86%), Positives = 609/659 (92%), Gaps = 2/659 (0%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALM YITVGSA  PILEFLEEW TENFEEISPAVIP +T
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMAYITVGSAVNPILEFLEEWSTENFEEISPAVIPNST 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNG WVGIHRDPE+LV+TLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLF
Sbjct: 61   KIFVNGSWVGIHRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVEKQRLLIKK D+ ALQQ+E+ E G W+DLV+KGFIEY+DTEEEETTMISMTI DLV A
Sbjct: 121  IVEKQRLLIKKSDVRALQQKEATESG-WYDLVSKGFIEYVDTEEEETTMISMTIADLVNA 179

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            R +PE +++ TYTHCEIHPS+ILGVC SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180  RNNPEASFSVTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSSI
Sbjct: 240  LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSI 299

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRS+F+RSYRDEEK+ GTL+KE+F RP+R NT GMRHGSYD+LDDDGLAPPGTRVS
Sbjct: 300  DRGFFRSIFYRSYRDEEKRQGTLIKEEFERPNRENTTGMRHGSYDELDDDGLAPPGTRVS 359

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKTTP+ QD+   QA RYT+RD S  LRHSE+GM+DQVLLTTNADGLRFVK+RV
Sbjct: 360  GEDVIIGKTTPLPQDDNASQAQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRV 419

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RS+RIPQIGDKFSSRHGQK TVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420  RSIRIPQIGDKFSSRHGQKCTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            CIMGKVAAHMGKEGDATPFTD TVDNISKALHKCGYQMRGFE MYNGHTGRRL+A IFLG
Sbjct: 480  CIMGKVAAHMGKEGDATPFTDATVDNISKALHKCGYQMRGFEVMYNGHTGRRLSAHIFLG 539

Query: 1052 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 1111
            PTYYQRLKHM+DDKIHSRGRGPVQILTRQPAEGRSR GGLRFGEMERDCMIAHGA+HFLK
Sbjct: 540  PTYYQRLKHMMDDKIHSRGRGPVQILTRQPAEGRSRVGGLRFGEMERDCMIAHGAAHFLK 599

Query: 1112 ERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK-LLFQEL 1169
            ERLFDQSDAYRVHVCEHCGLIAIANLKKN++ECR CKNK  +      YA     FQ+L
Sbjct: 600  ERLFDQSDAYRVHVCEHCGLIAIANLKKNTYECRACKNKQTLCSALYHYALXTFFFQKL 658


>gi|6606133|gb|AAF19079.1|AF107807_1 DNA-dependent RNA polymerase II RPB140, partial [Leotia viscosa]
          Length = 938

 Score = 1216 bits (3145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/938 (62%), Positives = 726/938 (77%), Gaps = 42/938 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK  P+   YVAE+RS  E  +R  S++ +++ S+   + G
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPPPSPTPYVAEIRSALEKGSRLISSLTIKLHSKGDNQRG 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            S G  I++TLPYI+ +IP+ IVFRALG V+D+DIL HICYD  DTQM+E+L+P +EEAFV
Sbjct: 61   SFGATIKSTLPYIKADIPMGIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFV 120

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++VALDYIGKRG  +G+TRDKRIKYA++I+QKE+LPH+   +  ET+KA++ GY++H
Sbjct: 121  IQDREVALDYIGKRGNAMGLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVH 180

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            +LL CALGRR  DDRDH+G KRLDLAGPLL  LFR LF+KLT+D+  Y Q+CV+N K+ N
Sbjct: 181  KLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFKKLTQDLFKYTQRCVENRKEFN 240

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
                IK+ T+T+GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIG
Sbjct: 241  PALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIG 300

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y+TVG+ + PI+EF+ +   
Sbjct: 301  RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRSM 360

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E  EE  P   P ATK+FVNG WVG+HRDP  LV+T+R LRR   ++ EV ++RDIR +E
Sbjct: 361  EVLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVQTVRDLRRSHHISYEVSLIRDIRDRE 420

Query: 617  LRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI----------IALQQRESPEDG-- 657
             +I+TD GR  RPLF+++       K  L++ K  I          + L   E  E G  
Sbjct: 421  FKIFTDAGRVCRPLFVIDNDVNSKNKGNLVLNKGHIKRLEDDTTLPLGLDLEEKQERGYF 480

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL--------------------HPEE 697
            G+  L+ +G +EY+D EEEET MI MT  DL  +R                      P +
Sbjct: 481  GFQGLIDEGVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYQIQEDNSGELNRRVKAPMK 540

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
              A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+
Sbjct: 541  PTAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTM 600

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FR
Sbjct: 601  ANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 660

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLFFRSY D+EK++G  V E F +P R++T+ ++HG+YDKLDDDGL  PG RVSGED+II
Sbjct: 661  SLFFRSYTDQEKRIGMNVVEQFEKPFRNDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIII 720

Query: 878  GKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKT PI+ D E  GQ ++ +++RD S  LR +E G+VDQVL+TTNA+GLRFVKVR+R+ +
Sbjct: 721  GKTAPIAPDNEELGQRTKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTK 780

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            +PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + 
Sbjct: 781  VPQIGDKFASRHGQKGTIGITYKQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLS 840

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KVA+  G EGDATPFTDVTVDN+SK L + GYQ RGFE MY+GHTGR+LTA +FLGPTYY
Sbjct: 841  KVASLSGYEGDATPFTDVTVDNVSKLLREHGYQSRGFEIMYHGHTGRKLTAQVFLGPTYY 900

Query: 1056 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            QRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGLRF
Sbjct: 901  QRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 938


>gi|120561247|gb|ABM27008.1| RNA polymerase II second largest subunit, partial [Furculomyces
            boomerangus]
          Length = 906

 Score = 1214 bits (3142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/908 (63%), Positives = 716/908 (78%), Gaps = 27/908 (2%)

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKV+IAQE+++TN V+VFKK  P  + Y AE+RS AE  ++  S +F+++ ++  +KG  
Sbjct: 2    EKVMIAQERIATNTVFVFKKNIPYPH-YTAEIRSAAEKASKQASPLFLKITNKGVSKG-- 58

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
             G  I+A++PYIR++IP+++VFRALG VA KDILEHICYD  D QM+E  +PS+EEAFVI
Sbjct: 59   LGGEIQASIPYIRSDIPVVVVFRALGMVAVKDILEHICYDGNDHQMLEKFKPSIEEAFVI 118

Query: 319  QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            Q++ VALD+IGKRG  VGV++DKRIKY  EILQKE LPHVGT    ET+K+++FGY++HR
Sbjct: 119  QDKDVALDFIGKRGTAVGVSKDKRIKYGAEILQKEFLPHVGTQAHNETRKSFFFGYMVHR 178

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            LLLCAL RR +DDRDHYG KR+DLAGPLL  LFR LFRK+T+D+  Y+QKC+D+ ++ NL
Sbjct: 179  LLLCALERREQDDRDHYGKKRMDLAGPLLAMLFRNLFRKVTKDMTRYLQKCIDSKREFNL 238

Query: 439  QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
              AIK+ TIT+GLKYSLATGNWG Q  +  +R GVSQVLNR T+ASTLSHLRR N+PIGR
Sbjct: 239  TMAIKSNTITAGLKYSLATGNWGDQKKSMQSRTGVSQVLNRYTFASTLSHLRRCNTPIGR 298

Query: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
            +GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM +IT+G+ + P+L FLEEW  E
Sbjct: 299  DGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITIGAESGPLLLFLEEWAME 358

Query: 558  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
            N EE++ + IP ATKIFVNG WVGIHRD   LV TL ++RRR+D++ E+ +VRD+R KEL
Sbjct: 359  NLEELTASNIPDATKIFVNGVWVGIHRDANRLVSTLLQMRRRLDLSYELSIVRDVREKEL 418

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE--SPEDGGWHDLVAKGFIEYIDTEE 675
            R++TD GR SRPLF+V   RL + K  + A++ R+   PE   WHDL+ +G +EY+D EE
Sbjct: 419  RLFTDAGRVSRPLFVVNNLRLNLTKDIVRAIEARDVNDPEAVRWHDLMVEGIVEYLDAEE 478

Query: 676  EETTMISMTINDLVQARL---HPEEAYAD----------------TYTHCEIHPSLILGV 716
            EET MI MT  +L ++R+   H  E  A+                T+THCEIHPS+ILG+
Sbjct: 479  EETAMICMTSAELKESRMFHEHGIEPQAEDDLASRIRSRRNVQIHTWTHCEIHPSMILGI 538

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASI+PFPDHNQSPRNTYQSAMGKQAMGI +T+YQ RMDTL+ +LYYPQKPL TT +ME+
Sbjct: 539  CASIVPFPDHNQSPRNTYQSAMGKQAMGIMLTSYQLRMDTLSNILYYPQKPLATTHSMEY 598

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            + F  LPAG NA+VAI CYSGYNQEDSVIMNQSSIDRG FRS+F+R+Y+DEE + G    
Sbjct: 599  IKFSDLPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMFYRTYQDEEDRQGMKTM 658

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQAS-R 894
              F RP R  T+ ++HG+Y+KL+DDGL  PGTRV+G+D+IIGKTTPI  D  + GQ +  
Sbjct: 659  GTFERPTRETTLRLKHGTYEKLEDDGLIAPGTRVTGDDIIIGKTTPIPIDSIELGQRTVT 718

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            +T+ D S  LR +ETG+VDQV+LTTN DG +FVKVRVRS R+PQIGDKF+SRHGQKGT+G
Sbjct: 719  HTKLDASKPLRSTETGIVDQVMLTTNGDGFKFVKVRVRSTRVPQIGDKFASRHGQKGTIG 778

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY  EDMP+T EG+ PD+I+NPHAIPSRMTIG L+EC++ K+A  +G   DATPFTDVT
Sbjct: 779  ITYRTEDMPFTSEGVVPDLIINPHAIPSRMTIGHLVECLLSKLATLIGTTADATPFTDVT 838

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1074
            V+ IS+ L   GYQ RGFE MYNGHTGR+L A +FLGPTYYQRLKHMVDDKIHSR RGPV
Sbjct: 839  VEAISRELFSLGYQSRGFEVMYNGHTGRKLQAQVFLGPTYYQRLKHMVDDKIHSRARGPV 898

Query: 1075 QILTRQPA 1082
            QILT QP 
Sbjct: 899  QILTSQPV 906


>gi|40388703|gb|AAR85529.1| RNA polymerase II [Botryotinia fuckeliana]
          Length = 952

 Score = 1213 bits (3139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/952 (60%), Positives = 732/952 (76%), Gaps = 42/952 (4%)

Query: 190  GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 249
            GGYFIINGSEKVLIAQE+ + N V VFKK   +  +Y+AE+RS  E  +R  S++ +++ 
Sbjct: 1    GGYFIINGSEKVLIAQERSAANIVQVFKKPANSAVSYLAEIRSALEKGSRLISSLQIKLY 60

Query: 250  SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 309
             +  +  G  G+ +++TLPYI+ +IPI IVFRALG V+D+DIL HICYD  DTQM+E+L+
Sbjct: 61   DKGDSNRGGFGKTVKSTLPYIKADIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEMLK 120

Query: 310  PSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKA 369
            P +EEAFVIQ+++VALD+IGKRG    +TRDKRIKYA++I+QKE+LPH+   +  ET+KA
Sbjct: 121  PCIEEAFVIQDREVALDFIGKRGNGTSLTRDKRIKYARDIMQKELLPHISQKEGSETRKA 180

Query: 370  YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC 429
            ++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR LFR+LT DV  Y+Q+C
Sbjct: 181  FFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDVYRYLQRC 240

Query: 430  VDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHL 488
            V+N ++ NL   +K+ TIT+GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHL
Sbjct: 241  VENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHL 300

Query: 489  RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
            RR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y+TVG+ + PI+
Sbjct: 301  RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIV 360

Query: 549  EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV 608
            EF+ +   E  EE  P   P ATK+FVNG WVGIHRDP  LVK ++ LRR   ++ EV +
Sbjct: 361  EFMIQRNMEVLEEYEPLRAPNATKVFVNGVWVGIHRDPAHLVKCVQDLRRSHLISHEVSL 420

Query: 609  VRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQ----------QR 651
            +R+IR +E +I+TD GR  RPL +++       K  L++ K  I  L+          + 
Sbjct: 421  IREIRDREFKIFTDAGRVCRPLLVIDNDPDSANKGNLVLNKDHIRRLEDDQLLPANMDKD 480

Query: 652  ESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-------LHPEEA---- 698
            E   +G  G+  L+  G +EY+D EEEET MI+MT  DL  +R       + P+E+    
Sbjct: 481  EKVRNGYYGFQGLINDGVVEYLDAEEEETVMITMTPEDLDISRQLQAGYQIRPDESGDLN 540

Query: 699  ---------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 749
                      A  +THCEIHPS+ILG+CASIIPFPDHNQSPRN YQSAMGKQAMG+++TN
Sbjct: 541  KRVKAPINPTAHVWTHCEIHPSMILGICASIIPFPDHNQSPRNCYQSAMGKQAMGVFLTN 600

Query: 750  YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 809
            +  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 601  FDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQS 660

Query: 810  SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 869
            SIDRG FRSLF+R+Y D+EK++G  V E F +P RS+T+ ++ G+YDKLDDDG+  PG R
Sbjct: 661  SIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVAPGVR 720

Query: 870  VSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 927
            V+G D+IIGKT PI+ D E  GQ ++ + +RD S  LR +E+G+VDQVL+TTNA+GLRFV
Sbjct: 721  VTGADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEGLRFV 780

Query: 928  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
            KVR+R+ +IPQIGDKF+SRHGQKGT+G+TY Q+DMP+T EG+ PD+I+NPHAIPSRMTI 
Sbjct: 781  KVRMRTTKIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIA 840

Query: 988  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1047
             LIEC + KV+   G EGDATPFT+VTVD++SK L   GY  RGFE MY+GHTGR++ A 
Sbjct: 841  HLIECQLSKVSTLRGLEGDATPFTEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQ 900

Query: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1099
            +FLGPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGLRFGEMERD
Sbjct: 901  VFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERD 952


>gi|89274894|gb|ABD65888.1| RNA polymerase II second largest subunit, partial [Laetiporus
            sulphureus]
          Length = 897

 Score = 1213 bits (3138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/900 (64%), Positives = 710/900 (78%), Gaps = 27/900 (3%)

Query: 214  YVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 273
            YVF K QP+  +++AE+RS  E   +  S   V++  R   +  S G  ++AT+PYI+ +
Sbjct: 1    YVFAKAQPSPVSFLAEIRSAVERGGKTISQFQVKLYHRNQER--SLGNVMKATIPYIKVD 58

Query: 274  IPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGA 333
            IPI +VFRALG ++D+DILEHICYD QD QM+E+L+P +++ FVIQ+++VALD+IG RG 
Sbjct: 59   IPIWVVFRALGVISDRDILEHICYDMQDVQMLEMLKPCIDDGFVIQDREVALDFIGNRGT 118

Query: 334  TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 393
            T G+ R++R++YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL A+ RR  DDRD
Sbjct: 119  TTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAAMERRDLDDRD 178

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKY
Sbjct: 179  HFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGLKY 238

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            SLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ W
Sbjct: 239  SLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHW 298

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            GM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK
Sbjct: 299  GMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP-CTK 357

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            +FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFI
Sbjct: 358  VFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFI 417

Query: 633  VEKQRLLIKKRDIIALQ--QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 690
            VE Q+LL+ K+ I  L   Q E  +   W  LV  G IE +D EEEET MI MT  DL  
Sbjct: 418  VENQQLLLAKKHIQYLNDGQDEEGKPYKWDSLVKGGVIELLDAEEEETVMICMTPEDLEN 477

Query: 691  ARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
            +R+       H  +   D            T+THCEIHPS+ILGVCASIIPFPDHNQSPR
Sbjct: 478  SRMQSNTIDSHMNDGEFDPAARLKATTNTHTWTHCEIHPSMILGVCASIIPFPDHNQSPR 537

Query: 732  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
            NTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVA
Sbjct: 538  NTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVA 597

Query: 792  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 851
            I CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+
Sbjct: 598  ILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRENTLRMK 657

Query: 852  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSET 909
            HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+
Sbjct: 658  HGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTES 717

Query: 910  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
            G++DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI
Sbjct: 718  GIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGI 777

Query: 970  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1029
            TPDI++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ 
Sbjct: 778  TPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKGYQS 837

Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1089
            RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDG
Sbjct: 838  RGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDG 897


>gi|89274902|gb|ABD65892.1| RNA polymerase II second largest subunit, partial [Sparassis crispa]
          Length = 900

 Score = 1212 bits (3137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/903 (63%), Positives = 714/903 (79%), Gaps = 31/903 (3%)

Query: 214  YVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTE 273
            YVF K QP+  +++AE+RS  E   +  S   V++  R   +  S G  ++A++PYI+ +
Sbjct: 1    YVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRNQER--SLGNVMKASIPYIKVD 58

Query: 274  IPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGA 333
            IPI +VFRALG ++D+DILEHICYD QD QM+E+L+P +++ FVIQ+++VALD+IG RG 
Sbjct: 59   IPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGT 118

Query: 334  TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRD 393
            T G+ R++R++YA+EILQKEMLPH+   +  E+KKAY+FGY+IHRLLL AL RR  DDRD
Sbjct: 119  TTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRD 178

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV++ K+ NL  A+K+ TIT+GLKY
Sbjct: 179  HFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLNLAVKSNTITNGLKY 238

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            SLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ W
Sbjct: 239  SLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHW 298

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            GM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK
Sbjct: 299  GMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEEWGLESLEENAHSATP-CTK 357

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            +FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFI
Sbjct: 358  VFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFI 417

Query: 633  VEKQRLLIKKRDIIAL-----QQRESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTIN 686
            VE Q+LL+ K+ I  L     +++  P  G  W +L+  G IE +D EEEET MI MT  
Sbjct: 418  VENQQLLLTKKHIDLLNRSAEEEKALPGSGYKWDNLIKSGVIELLDAEEEETVMICMTPE 477

Query: 687  DLVQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHN 727
            DL  +RL          +E +           A T+THCEIHPS+ILGVCASIIPFPDHN
Sbjct: 478  DLDNSRLQSSGVDPHANDEDFDPAARLKAVTNAHTWTHCEIHPSMILGVCASIIPFPDHN 537

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG N
Sbjct: 538  QSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQN 597

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T
Sbjct: 598  AIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRDTT 657

Query: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLR 905
            + M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+
Sbjct: 658  LRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRAHTKRDVSTPLK 717

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
             +E+G++DQVL+TTNADG +FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 718  STESGIIDQVLITTNADGQKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFT 777

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
             EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S+ L + 
Sbjct: 778  AEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVESVSQVLRQK 837

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGR
Sbjct: 838  GYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 897

Query: 1086 SRD 1088
            SRD
Sbjct: 898  SRD 900


>gi|6606131|gb|AAF19078.1|AF107806_1 DNA-dependent RNA polymerase II RPB140, partial [Microglossum viride]
          Length = 938

 Score = 1212 bits (3136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/938 (62%), Positives = 724/938 (77%), Gaps = 42/938 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK  P+   +VAE+RS  E  +R  S++ +++ S+   + G
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPPPSPTPFVAEIRSALEKGSRLISSLTIKLHSKGDNQRG 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            S G  +++TLPYI+ +IPI IVFRALG V+D+DIL HICYD  DTQM+E+L+P +EEAFV
Sbjct: 61   SFGSTVKSTLPYIKADIPIGIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFV 120

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++VALDYIGKRG  +G+TRDKRIKYA++I+QKE+LPH+   +  ET+KA++ GY++H
Sbjct: 121  IQDREVALDYIGKRGNAMGLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVH 180

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            +LL CALGRR  DDRDH+G KRLDLAGPLL  LFR LF+KLT+D+  Y Q+CV+N K+ N
Sbjct: 181  KLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFKKLTQDLFKYTQRCVENRKEFN 240

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
                IK+ T+T+GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIG
Sbjct: 241  PALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIG 300

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y+TVG+ + PI+EF+ +   
Sbjct: 301  RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRSM 360

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E  EE  P   P ATK+FVNG WVG+HRDP  LV+T+R LRR   ++ EV ++RDIR +E
Sbjct: 361  EVLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVQTVRDLRRSHHISYEVSLIRDIRDRE 420

Query: 617  LRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI----------IALQQRESPEDG-- 657
             +I+TD GR  RPLF+++       K  L++ K  I          + L   E  E G  
Sbjct: 421  FKIFTDAGRVCRPLFVIDNDVSSKNKGNLVLNKGHIKRLEDDATLPLGLDLEEKQERGYF 480

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL--------------------HPEE 697
            G+  L+ +G +EY+D EEEET MI MT  DL  +R                      P +
Sbjct: 481  GFQGLIDEGVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYQIQEDNSGELNRRVKAPMK 540

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
              A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+
Sbjct: 541  PTAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTM 600

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FR
Sbjct: 601  ANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 660

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLFFRSY D+EK++G  V E F +P R++T+ ++HG+YDKLDDDGL  PG RVSGED+II
Sbjct: 661  SLFFRSYTDQEKRIGMNVVEQFEKPFRNDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIII 720

Query: 878  GKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKT PI+ D E  GQ ++ +++RD S  LR +E G+VDQVL+TTNA+GLRFVKVR+R+ +
Sbjct: 721  GKTAPIAPDNEELGQRTKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTK 780

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            IPQIGDKF+SRHGQKGT+G+ Y QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + 
Sbjct: 781  IPQIGDKFASRHGQKGTIGIIYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLS 840

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KVA+  G EGDATPFTDVTVDN+SK L + GYQ RGFE MY+GHTGR+L A +FLGPTYY
Sbjct: 841  KVASLSGYEGDATPFTDVTVDNVSKLLREHGYQSRGFEIMYHGHTGRKLVAQVFLGPTYY 900

Query: 1056 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            QRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGLRF
Sbjct: 901  QRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 938


>gi|418204394|gb|AFX61751.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            variegata]
          Length = 1110

 Score = 1206 bits (3119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/1114 (54%), Positives = 764/1114 (68%), Gaps = 83/1114 (7%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            ED+E+ IT ED W VIS++FE KGLV QQLDS+DEFI  TMQE+VDE   + +      +
Sbjct: 1    EDDEKHITSEDCWTVISSFFEAKGLVSQQLDSYDEFITTTMQELVDEQGQVTVDQTLTPD 60

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
              + +      Y++ FG   + +P MTESDG T  + P+ ARLRNLTYS+P+Y++ TKR+
Sbjct: 61   EDEMNPVVVRRYELKFGTCQIGRPTMTESDGTTTVMLPQEARLRNLTYSSPIYLEFTKRI 120

Query: 137  IKKGHDGEEVT-----------------------------------ETQDFTKVFIGKVP 161
                 +  EVT                                   +      +FIGK+P
Sbjct: 121  T----EAREVTMAPDAEDEDDEEDERDADLKARGTYLQWEEKKLGPKEHKMENIFIGKMP 176

Query: 162  IMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 221
            IM+RS YC L   SE+ L    ECP+D GGYF+INGSEKVLIAQE+ + N V +F+K  P
Sbjct: 177  IMVRSKYCLLRDLSEQRLYNWNECPFDSGGYFVINGSEKVLIAQERSAGNIVQIFQKAPP 236

Query: 222  NKYAYVAEVRSMAESQNRPPSTMFVRML-SRT--SAKGGSSGQYIRATLPYIRTEIPIII 278
            +   Y+AE+RS  E  +R  S + +++  +RT  S+ GG SG  I++TLPY+R +IPI I
Sbjct: 237  SPTPYIAEIRSAIEKGSRILSQLSIKLFKARTEKSSTGGQSGAMIKSTLPYVRDDIPIFI 296

Query: 279  VFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVT 338
            VFRALG V+D+DIL HICYD  D  M+ELL+P+++    IQ ++VALD+I KRG    +T
Sbjct: 297  VFRALGVVSDEDILNHICYDPNDLPMLELLKPTIQTCLCIQEREVALDFIAKRGQHPSMT 356

Query: 339  RDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 398
            +DKRI++A++I+QKE LPH+   +  ET+KA++FGY++H+LL CALGRR  DDRDH+G K
Sbjct: 357  QDKRIRFARDIMQKEFLPHISQSEGSETRKAFFFGYMVHKLLQCALGRRDVDDRDHFGKK 416

Query: 399  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 458
            RLDLAGPLL GLFR LF +LT+D+  YVQ CV+    + L  A+K  T++ GLKY+LATG
Sbjct: 417  RLDLAGPLLAGLFRTLFMRLTKDLNRYVQICVEKNTQLQLNIAVKNGTLSGGLKYALATG 476

Query: 459  NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 517
            NWG Q  AA ++AGVSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 477  NWGEQKKAASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 536

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEGQACGLVKNL+LM  ITVG+ A  IL+FL     E  EE  P V P  TK+F+NG
Sbjct: 537  AETPEGQACGLVKNLSLMCTITVGTQATGILDFLIAQHMEVLEEYEPQVSPDVTKVFLNG 596

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ- 636
             WVG+HRDP  LV  ++ LRR+  +  E  +VRDIR KE +I+TD GR  RPLF+V+   
Sbjct: 597  VWVGVHRDPSHLVSKIQSLRRQNLLPYEASLVRDIRDKEFKIFTDAGRVCRPLFVVDNDP 656

Query: 637  ------RLLIKKRDIIALQQRE------SPEDG-----GWHDLVAKGFIEYIDTEEEETT 679
                   L++ K  I  L+  +       PED      GW  LV  G IEY+D EEEET 
Sbjct: 657  ASSNCGNLVLTKEHIKKLEADKDLPRNLDPEDRRARHFGWRGLVTSGVIEYVDAEEEETI 716

Query: 680  MISMTINDL------------VQARLHPE-------EAYADTYTHCEIHPSLILGVCASI 720
            MI MT  +L            +  R  P              YTHCEIHPS+ILG+CASI
Sbjct: 717  MIVMTPEELESQKQMKRGAMPIADRSDPNRRVRPLFSQKVHMYTHCEIHPSMILGICASI 776

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T++ +LYYPQKPL TTR+ME L FR
Sbjct: 777  IPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMSNILYYPQKPLATTRSMEFLKFR 836

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
             LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R Y D EK +G  V E F 
Sbjct: 837  DLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDSEKVVGVSVTERFE 896

Query: 841  RPDRSNTMGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQ-ASRYTR 897
             P RS+T+  +    Y  L  DG+A  G  VSG  VIIGKT P++ + E  GQ  S +T+
Sbjct: 897  VPSRSDTLRAKDEEEYKHLGADGIAEIGEHVSGGAVIIGKTAPLAPESEELGQRESHHTK 956

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
             D S  LR +E G VDQV++TT++D  +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY
Sbjct: 957  IDTSTCLRTTENGHVDQVVVTTSSDDTKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1016

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1017
             QEDMP+T EGITPD+I+NPHAIPSRMTI  LIEC + KVAA  G EGDATPFTDVTVD+
Sbjct: 1017 CQEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSKVAALRGFEGDATPFTDVTVDS 1076

Query: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            +S  L + GYQ RGFE MYNGHTGR+L A +FLG
Sbjct: 1077 VSNLLRESGYQSRGFEVMYNGHTGRKLVAQVFLG 1110


>gi|55273999|gb|AAV48870.1| RNA polymerase II second largest subunit [Climacodon septentrionalis]
          Length = 886

 Score = 1204 bits (3116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/891 (64%), Positives = 701/891 (78%), Gaps = 25/891 (2%)

Query: 215  VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 274
            VF K QP+  +++AE+RS  E   +  S   V++  R   +  S G  ++AT+PYI+ +I
Sbjct: 1    VFAKAQPSPVSFLAEIRSAVEKGGKTISQFQVKLYHRNQER--SMGNVLKATIPYIKVDI 58

Query: 275  PIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT 334
            PI +VFRALG ++D+DILEHICYD QD QM+E+L+P +++ FVIQ++++ALD+IG RG T
Sbjct: 59   PIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREIALDFIGNRGTT 118

Query: 335  VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 394
             G+ R++R++YA+EILQKEMLPH+   +  E+KKAY+FGY IHRLLL AL RR  DDRDH
Sbjct: 119  TGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYRIHRLLLAALERRDLDDRDH 178

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYS
Sbjct: 179  FGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYS 238

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q      +AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WG
Sbjct: 239  LATGNWGDQKKMMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 298

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            M+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+
Sbjct: 299  MVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP-CTKV 357

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIV
Sbjct: 358  FVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIV 417

Query: 634  EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 692
            E Q+L I K+ I  L  +ES     W DL+  G IE +D EEEET MI MT  DL  AR 
Sbjct: 418  ENQQLTITKKHISQLSDKESGYK--WDDLIKGGVIELLDAEEEETVMICMTPEDLELARN 475

Query: 693  ----LHPEEAYADT------------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
                L  + A  D             +THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQS
Sbjct: 476  GIDPLQQDAADIDMSVRLKTAQTAHKFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 535

Query: 737  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
            AMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYS
Sbjct: 536  AMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYS 595

Query: 797  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 856
            GYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+FG+P R  T+ M+HG+YD
Sbjct: 596  GYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFGKPTRETTLRMKHGTYD 655

Query: 857  KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQ 914
            K++DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++DQ
Sbjct: 656  KIEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEKLGQRTRQHTRRDVSTPLKSTESGIIDQ 715

Query: 915  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 974
            VL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII
Sbjct: 716  VLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDII 775

Query: 975  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 1034
            +NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L K GYQ RG E 
Sbjct: 776  INPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRKEGYQSRGLEV 835

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGR
Sbjct: 836  MYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 886


>gi|58618681|gb|AAW80835.1| RNA polymerase II second largest subunit [Cotylidia sp. MB5]
          Length = 892

 Score = 1204 bits (3115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/894 (64%), Positives = 701/894 (78%), Gaps = 30/894 (3%)

Query: 220  QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 279
            QP+   ++AE+RS  E   +  S   V+M  R   KG  SG  ++AT+PYI+ +IPI +V
Sbjct: 2    QPSPINFLAEIRSAVEKGGKTISQFQVKMYHRNQDKG--SGNVMKATIPYIKVDIPIWVV 59

Query: 280  FRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR 339
            FRALG ++D+DILEHICYD QD QM+E+L+P +++ FVIQ++++ALD+IG RG   G++R
Sbjct: 60   FRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREIALDFIGNRGTATGLSR 119

Query: 340  DKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKR 399
            ++R++YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL R   DDRDH+G KR
Sbjct: 120  ERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERPELDDRDHFGKKR 179

Query: 400  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 459
            LDLAGPLL GLFRMLFRKLT+DV  Y+QKCV+  K  N+  A+K  TIT+GLKYSLATGN
Sbjct: 180  LDLAGPLLAGLFRMLFRKLTKDVYRYLQKCVEGHKAFNISLAVKHNTITNGLKYSLATGN 239

Query: 460  WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
            WG Q  +  T+AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPA
Sbjct: 240  WGDQKKSMTTKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 299

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVNG 
Sbjct: 300  ETPEGQACGLVKNLALMATISVGSLSAPVIEFLEEWGLESLEENAHSPIP-LTKVFVNGV 358

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L
Sbjct: 359  WMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQL 418

Query: 639  LIKKRDIIALQQRESPEDGG-----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 693
             ++K+ +  L Q    +D       W  LV  G IEY+D EEEET MI MT  DL  +RL
Sbjct: 419  ALQKKHVKWLNQGYRDDDPAQDPYKWDSLVKGGVIEYLDAEEEETVMICMTPEDLENSRL 478

Query: 694  -------HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
                   H  +              A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 479  QQQGIDPHANDGDFDPAARLKSVQNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 538

Query: 735  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
            QSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 539  QSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILC 598

Query: 795  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
            YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+
Sbjct: 599  YSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRETTLRMKHGT 658

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 912
            YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+V
Sbjct: 659  YDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIV 718

Query: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            DQVL+TTN+DG +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD
Sbjct: 719  DQVLITTNSDGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPD 778

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032
            II+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG 
Sbjct: 779  IIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGL 838

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRS
Sbjct: 839  EVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRS 892


>gi|418204388|gb|AFX61748.1| RNA polymerase II second-largest subunit, partial [Ascosphaera cf.
            larvis 64254]
          Length = 1110

 Score = 1203 bits (3112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/1110 (54%), Positives = 764/1110 (68%), Gaps = 75/1110 (6%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            ED+E+ IT ED W VIS++FE KGLV QQLDS+DEFI  TMQE+VDE   + +      +
Sbjct: 1    EDDEKHITSEDCWTVISSFFEAKGLVSQQLDSYDEFITTTMQELVDEQGQVTVDQTLTPD 60

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
              + +      Y++ FG   + +P MTESDG T  + P+ ARLRNLTYS+P+Y++ TKR+
Sbjct: 61   EDEMNPVVVRRYELKFGTCQIGRPTMTESDGTTTVMLPQEARLRNLTYSSPIYLEFTKRI 120

Query: 137  IK-------------------------------KGHDGEEVTETQDFTKVFIGKVPIMLR 165
             +                               +  + +   +      +FIGK+PIM+R
Sbjct: 121  TEAREVSMAPDAEDEDDEEDERDADLKARGTYLQWEEKQLGPKEHKKENIFIGKMPIMVR 180

Query: 166  SSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 225
            S YC L   SE+ L    ECP+D GGYF+INGSEKVLIAQE+ + N V +F+K  P+   
Sbjct: 181  SKYCLLRDLSEQSLYNWNECPFDSGGYFVINGSEKVLIAQERSAGNIVQIFQKAPPSPTP 240

Query: 226  YVAEVRSMAESQNRPPSTMFVRMLSRTSAK---GGSSGQYIRATLPYIRTEIPIIIVFRA 282
            Y+AE+RS  E  +R  S + +++    + K   GG SG  I++TLPY+R +IPI IVFRA
Sbjct: 241  YIAEIRSAIEKGSRILSQLSIKLFKARTEKNTTGGQSGAMIKSTLPYVRDDIPIFIVFRA 300

Query: 283  LGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKR 342
            LG V+D+DIL HICYD  D  M+ELL+P+++    IQ ++VALD+I KRG    +T+DKR
Sbjct: 301  LGVVSDEDILNHICYDPNDLPMLELLKPTIQTCLCIQEREVALDFIAKRGQHPSMTQDKR 360

Query: 343  IKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDL 402
            I++A++I+QKE LPH+   +  ET+KA++FGY++H+LL CALGRR  DDRDH+G KRLDL
Sbjct: 361  IRFARDIMQKEFLPHISQSEGSETRKAFFFGYMVHKLLQCALGRRDVDDRDHFGKKRLDL 420

Query: 403  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 461
            AGPLL GLFR LF +LT+D+  YVQ CV+    + L  A+K  T++ GLKY+LATGNWG 
Sbjct: 421  AGPLLAGLFRTLFMRLTKDLNRYVQICVEKNTQLQLNIAVKNGTLSGGLKYALATGNWGE 480

Query: 462  QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
            Q  AA ++AGVSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 481  QKKAASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 540

Query: 522  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
            EGQACGLVKNL+LM  ITVG+ A  IL+FL     E  EE  P V P  TK+F+NG WVG
Sbjct: 541  EGQACGLVKNLSLMCTITVGTQATGILDFLIAQHMEVLEEYEPQVSPDVTKVFLNGVWVG 600

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----- 636
            +HR+P  LV  ++ LRR+  +  E  +VRDIR KE +I+TD GR  RPLF+V+       
Sbjct: 601  VHRNPSHLVSMIQSLRRQNLLPYEASLVRDIRDKEFKIFTDAGRVCRPLFVVDNDPASSN 660

Query: 637  --RLLIKKRDIIALQQRE------SPEDG-----GWHDLVAKGFIEYIDTEEEETTMISM 683
               L++ K  I  L+  +       PE+      GW  LV  G IEY+D EEEET MI M
Sbjct: 661  CGNLVLTKEHIKKLEADKDLPRSLDPEERRARHFGWRGLVTSGVIEYVDAEEEETIMIVM 720

Query: 684  TINDLVQAR-----LHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFP 724
            T  +L   +       P   ++D               YTHCEIHPS+ILG+CASIIPFP
Sbjct: 721  TPEELESQKQMKRGAMPVADHSDPNRRVRSLYSQKVHMYTHCEIHPSMILGICASIIPFP 780

Query: 725  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
            DHNQSPRNTYQSAMGKQAMG+++TN+  RM+T++ +LYYPQKPL TTR+ME L FR LPA
Sbjct: 781  DHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMSNILYYPQKPLATTRSMEFLKFRDLPA 840

Query: 785  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 844
            G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R Y D EK +G  V E F  P R
Sbjct: 841  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDSEKVVGVSVTERFEVPSR 900

Query: 845  SNTMGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQ-ASRYTRRDHS 901
            S+T+  +    Y  L  DG+A  G  VSG  VIIGKT P++ + E  GQ  S +T+ D S
Sbjct: 901  SDTLRAKDQEEYKHLGADGIAEIGEHVSGGAVIIGKTAPLAPESEELGQRESHHTKIDTS 960

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
              LR +ETG VDQV++TT++D  +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 961  TCLRTTETGHVDQVVVTTSSDDTKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYCQED 1020

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MP+T EGITPD+I+NPHAIPSRMTI  LIEC + KVAA  G EGDATPFTDVTVD++S  
Sbjct: 1021 MPFTREGITPDLIINPHAIPSRMTIAHLIECQLSKVAALRGFEGDATPFTDVTVDSVSNL 1080

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            L + GYQ RGFE MYNGHTGR+L A +FLG
Sbjct: 1081 LRESGYQSRGFEVMYNGHTGRKLVAQVFLG 1110


>gi|520505|gb|AAC83398.1| RNA polymerase II, second largest subunit, partial [Artemia salina]
          Length = 862

 Score = 1202 bits (3110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/868 (67%), Positives = 694/868 (79%), Gaps = 16/868 (1%)

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSS 259
            LIAQEKM+TN VYVF  +  +KY Y  E+RS  E+ +RP ST++V M+++   + K  + 
Sbjct: 1    LIAQEKMATNTVYVFALKD-SKYCYKTEIRSCIENSSRPVSTLYVNMMAKGGQNLKKSAI 59

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I A +PYI+ EIPI+IVFRALGFVAD+DILEHI Y+F D +MME+++PSL+EAFVIQ
Sbjct: 60   GQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYEFDDPEMMEMVKPSLDEAFVIQ 119

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT+DKRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 120  EQNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRL 179

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDHYGNKRLDLAGPL+  LFR LF+ LT++VR Y QK +D GKD N++
Sbjct: 180  LLAALGRRELDDRDHYGNKRLDLAGPLMSLLFRGLFKTLTKEVRMYAQKFIDRGKDFNIE 239

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK K IT GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+
Sbjct: 240  LAIKPKFITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 299

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 300  GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 359

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EEI+P+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV +VRDI+ +E+
Sbjct: 360  LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMTTLRKLRRQMDIIVSEVSMVRDIQDREI 419

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE QRLL+KK  I  L+++E   +  W+DLVA G +EY+DT EEE
Sbjct: 420  RIYTDAGRICRPLLIVENQRLLLKKTHIEQLKEKEY-NNFVWNDLVASGVVEYVDTLEEE 478

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            T MI+M  +D+   RL   E Y  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 479  TAMIAMAPDDI---RLD-NEGYCATYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 534

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+VL YPQKPLVTTR+ME+L FR+LPAGIN+IVAI CY+G
Sbjct: 535  MGKQAMGVYITNFHVRMDTLAHVLCYPQKPLVTTRSMEYLRFRELPAGINSIVAILCYTG 594

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK--MGTLVKEDFGRPDRSNTMGMRH-GS 854
            YNQEDSV+MN S++DRGFFRS+FFRSY+D E K  M    +E F +P R    GM+H  S
Sbjct: 595  YNQEDSVLMNASAVDRGFFRSVFFRSYKDAETKRAMAGASEETFEKPSRDTCQGMKHPQS 654

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMV 912
            YDKLD+DG+  PG RVSG+DV+IGKT   P + DE    A RY++RD S  LR+SETG+ 
Sbjct: 655  YDKLDNDGIIAPGIRVSGDDVVIGKTVTMPENDDELSSAAKRYSKRDCSTFLRNSETGIT 714

Query: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            DQV+LT N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP++ EG  PD
Sbjct: 715  DQVMLTLNTEGFKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSAEGTAPD 774

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRG 1031
            II+NPHAIPSRMTIG LIECI GKV+A+ G+ GDATPF D V V  IS  L   GYQ+RG
Sbjct: 775  IIINPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKISNLLQDYGYQLRG 834

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
             E MYNG TGR+L + +FLGPTYYQRLK
Sbjct: 835  NEVMYNGFTGRKLVSQVFLGPTYYQRLK 862


>gi|418204390|gb|AFX61749.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            larvis]
          Length = 1110

 Score = 1202 bits (3109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/1110 (54%), Positives = 764/1110 (68%), Gaps = 75/1110 (6%)

Query: 17   EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
            ED+E+ IT ED W VIS++FE KGLV QQLDS+DEFI  TMQE+VDE   + +      +
Sbjct: 1    EDDEKHITSEDCWTVISSFFEAKGLVSQQLDSYDEFITTTMQELVDEQGQVTVDQTLTPD 60

Query: 77   PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
              + +      Y++ FG   + +P MTESDG T  + P+ ARLRNLTYS+P+Y++ TKR+
Sbjct: 61   EDEMNPVVVRRYELKFGTCQIGRPTMTESDGTTTVMLPQEARLRNLTYSSPIYLEFTKRI 120

Query: 137  IK-------------------------------KGHDGEEVTETQDFTKVFIGKVPIMLR 165
             +                               +  + +   +      +FIGK+PIM+R
Sbjct: 121  TEAREVSMAPDAEDEDDEEDERDADLKARGTYLQWEEKQLGPKEHKKENIFIGKMPIMVR 180

Query: 166  SSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 225
            S YC L   SE+ L    ECP+D GGYF+INGSEKVLIAQE+ + N V +F+K  P+   
Sbjct: 181  SKYCLLRDLSEQSLYNWNECPFDSGGYFVINGSEKVLIAQERSAGNIVQIFQKAPPSPTP 240

Query: 226  YVAEVRSMAESQNRPPSTMFVRMLSRTSAK---GGSSGQYIRATLPYIRTEIPIIIVFRA 282
            Y+AE+RS  E  +R  S + +++    + K   GG SG  I++TLPY+R +IPI IVFRA
Sbjct: 241  YIAEIRSAIEKGSRILSQLSIKLFKARTEKNTTGGQSGAMIKSTLPYVRDDIPIFIVFRA 300

Query: 283  LGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKR 342
            LG V+D+DIL HICYD  D  M+ELL+P+++    IQ ++VALD+I KRG    +T+DKR
Sbjct: 301  LGVVSDEDILNHICYDPNDLPMLELLKPTIQTCLCIQEREVALDFIAKRGQHPSMTQDKR 360

Query: 343  IKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDL 402
            I++A++I+QKE LPH+   +  ET+KA++FGY++H+LL CALGRR  DDRDH+G KRLDL
Sbjct: 361  IRFARDIMQKEFLPHISQSEGSETRKAFFFGYMVHKLLQCALGRRDVDDRDHFGKKRLDL 420

Query: 403  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 461
            AGPLL GLFR LF +LT+D+  YVQ CV+    + L  A+K  T++ GLKY+LATGNWG 
Sbjct: 421  AGPLLAGLFRTLFMRLTKDLNRYVQICVEKNTQLQLNIAVKNGTLSGGLKYALATGNWGE 480

Query: 462  QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
            Q  AA ++AGVSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 481  QKKAASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 540

Query: 522  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
            EGQACGLVKNL+LM  ITVG+ A  IL+FL     E  EE  P V P  TK+F+NG WVG
Sbjct: 541  EGQACGLVKNLSLMCTITVGTQATGILDFLIAQHMEVLEEYEPQVSPDVTKVFLNGVWVG 600

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----- 636
            +HR+P  LV  ++ LRR+  +  E  +VRDIR KE +I+TD GR  RPLF+V+       
Sbjct: 601  VHRNPSHLVSMIQSLRRQNLLPYEASLVRDIRDKEFKIFTDAGRVCRPLFVVDNDPASSN 660

Query: 637  --RLLIKKRDIIALQQRE------SPEDG-----GWHDLVAKGFIEYIDTEEEETTMISM 683
               L++ K  I  L+  +       PE+      GW  LV  G IEY+D EEEET MI M
Sbjct: 661  CGNLVLTKEHIKKLEADKDLPRSLDPEERRARHFGWRGLVTSGVIEYVDAEEEETIMIVM 720

Query: 684  TINDLVQARLH-----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFP 724
            T  +L   +       P   ++D               YTHCEIHPS+ILG+CASIIPFP
Sbjct: 721  TPEELESQKQMKRGAVPVADHSDPNRRVRPLYSQKVHMYTHCEIHPSMILGICASIIPFP 780

Query: 725  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
            DHNQSPRNTYQSAMGKQAMG+++TN+  RM+T++ +LYYPQKPL TTR+ME L FR LPA
Sbjct: 781  DHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMSNILYYPQKPLATTRSMEFLKFRDLPA 840

Query: 785  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 844
            G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R Y D EK +G  V E F  P R
Sbjct: 841  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDSEKVVGVSVTERFEVPSR 900

Query: 845  SNTMGMR-HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQ-ASRYTRRDHS 901
            S+T+  +    Y  L  DG+A  G  VSG  VIIGKT P++ + E  GQ  S +T+ D S
Sbjct: 901  SDTLRAKDQEEYKHLGADGIAEIGEHVSGGAVIIGKTAPLAPESEELGQRESHHTKIDTS 960

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
              LR +ETG VDQV++TT++D  +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 961  TCLRTTETGHVDQVVVTTSSDDTKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYCQED 1020

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MP+T EGITPD+I+NPHAIPSRMTI  LIEC + KVAA  G EGDATPFTDVTVD++S  
Sbjct: 1021 MPFTREGITPDLIINPHAIPSRMTIAHLIECQLSKVAALRGFEGDATPFTDVTVDSVSNL 1080

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            L + GYQ RGFE MYNGHTGR+L A +FLG
Sbjct: 1081 LRESGYQSRGFEVMYNGHTGRKLVAQVFLG 1110


>gi|89274896|gb|ABD65889.1| RNA polymerase II second largest subunit, partial [Phaeolus
            schweinitzii]
          Length = 887

 Score = 1201 bits (3107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/889 (63%), Positives = 697/889 (78%), Gaps = 25/889 (2%)

Query: 220  QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 279
            QP+   ++AE+RS  E   +  S   V+M  R   +  S G  ++AT+PYI+ +IPI ++
Sbjct: 2    QPSPINFLAEIRSAVEKGGKTISQFQVKMYHRNQER--SLGNVMKATIPYIKVDIPIWVL 59

Query: 280  FRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR 339
            FRALG ++D+DILEHICYD QD QM+ELL+P +++ FVIQ+++VALD+IG RG T G+ R
Sbjct: 60   FRALGVISDRDILEHICYDMQDAQMLELLKPCIDDGFVIQDREVALDFIGNRGTTTGLNR 119

Query: 340  DKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKR 399
            ++R++YA+EILQKEMLPH+   +  E+KKAY+FGY++HRLLL A+ R   DDRDH+G KR
Sbjct: 120  ERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMVHRLLLAAMEREDLDDRDHFGKKR 179

Query: 400  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 459
            LDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGN
Sbjct: 180  LDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGLKYSLATGN 239

Query: 460  WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
            WG Q     ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPA
Sbjct: 240  WGDQKRTMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 299

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNL+LM  ITVG+ + P++EFLEEWG E+ EE + + IP  TK+FVNG 
Sbjct: 300  ETPEGQACGLVKNLSLMSCITVGTLSAPVIEFLEEWGLESLEENAHSTIP-CTKVFVNGV 358

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            W+G+HRDP  LVKT+++LRR+ D+N EV VVRDIR +ELR+YTD GR SRPLFIVE Q+L
Sbjct: 359  WMGVHRDPANLVKTIKKLRRKDDINAEVSVVRDIRERELRVYTDAGRVSRPLFIVENQQL 418

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL----- 693
            L  K+ I  +   +  +   W  LV  G IE +D EEEET MI MT  DL  +RL     
Sbjct: 419  LFTKKHINLMLSTDEEKKLKWSALVKTGLIEMLDAEEEETVMICMTPEDLENSRLQSMGV 478

Query: 694  --HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
              H  +              A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 479  DPHANDGDFDPAARLKANPNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMG 538

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYN
Sbjct: 539  KQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYN 598

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDSVIMNQS+IDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDKL+
Sbjct: 599  QEDSVIMNQSAIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRENTLRMKHGTYDKLE 658

Query: 860  DDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLL 917
            DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++DQVL+
Sbjct: 659  DDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLI 718

Query: 918  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
            TTNA+G +FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI++NP
Sbjct: 719  TTNAEGQKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINP 778

Query: 978  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1037
            HAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+ +S  L + GY  RG E MY+
Sbjct: 779  HAIPSRMTIGHLVECLLSKVATIIGNEGDATPFTELTVEGVSDVLRQKGYHSRGLEIMYH 838

Query: 1038 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRS
Sbjct: 839  GHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRS 887


>gi|45545331|gb|AAS67513.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Hydnum repandum]
          Length = 887

 Score = 1200 bits (3104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/888 (64%), Positives = 698/888 (78%), Gaps = 26/888 (2%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+M+ NHVYVF K QP+  +++AEVRS  E   +  STM V+M  R   K  
Sbjct: 1    SEKVLIAQERMAANHVYVFAKAQPSPISFLAEVRSAVEKGGKTISTMQVKMFHRNPQKTV 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            S G  IRA+LPYIR +IPI +VFRALG  +D+DILEHICYD  DTQM+E+L+P ++E FV
Sbjct: 61   SLGNVIRASLPYIRDDIPIWVVFRALGITSDRDILEHICYDTNDTQMVEMLKPCIDEGFV 120

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ ++VALD IGKRG T G+++DKR++YA+EILQKEMLPHV  G+  E+KKA++FGY+IH
Sbjct: 121  IQEREVALDLIGKRGTTTGLSKDKRLRYAQEILQKEMLPHVSMGEGSESKKAFFFGYMIH 180

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL AL RR  DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  ++QKCV+  KD N
Sbjct: 181  RLLLAALERRELDDRDHFGKKRLDLAGPLLASLFRMLFRKLTKDVYRHLQKCVETHKDFN 240

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            +  A+K+ TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR T+ASTLSHLRR N+P+G
Sbjct: 241  ISIAVKSNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTPLG 300

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFL+EWG 
Sbjct: 301  RDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLQEWGL 360

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E+ EE + A    ATK+FVNG W+G+HRD   LVKTLRRLRR+ D+++EV +VRDIR KE
Sbjct: 361  ESLEENANAH-GSATKVFVNGVWMGVHRDAPNLVKTLRRLRRKDDISSEVSIVRDIREKE 419

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEE 676
            LR+YTD GR  RPLFIVE Q+LL+KK  +  L  +   +   W  LV  G IE +D EEE
Sbjct: 420  LRLYTDAGRVCRPLFIVENQQLLLKKEHVNMLNDKSRTDPYKWTHLVKDGVIELLDAEEE 479

Query: 677  ETTMISMTINDLVQARLHPEEA----------------------YADTYTHCEIHPSLIL 714
            ET MI MT +DL  +R +   A                       A T+THCEIHPS+IL
Sbjct: 480  ETVMICMTPDDLENSRTNQAVAAGYVSNAGASDHDVAARVRSTMTAHTWTHCEIHPSMIL 539

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            G+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TNYQ RMDT+A +LYYPQKPL TTR+M
Sbjct: 540  GICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSM 599

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E+L FR+LPAG NA VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK+G L
Sbjct: 600  EYLRFRELPAGQNATVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYTDAEKKVGVL 659

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 893
              E+F +P R  T+ M+HG+Y+KL+DDGL  PGT V+GED+IIGKT P+  D E  GQ  
Sbjct: 660  PLEEFEKPTRDTTLRMKHGTYEKLEDDGLIAPGTGVAGEDIIIGKTAPLPPDSEELGQRM 719

Query: 894  R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
            R +TRRD S  L+ +E G+VDQVL+TTN DGL+FVK+R+RS RIPQ+GDKF+SRHGQKGT
Sbjct: 720  RTHTRRDVSTPLKSTENGIVDQVLVTTNQDGLKFVKIRIRSTRIPQVGDKFASRHGQKGT 779

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            VG+TY  EDMP+T EGITPDII+NPHAIPSRMTIG LIEC++ K+A  +G EGDATPFT+
Sbjct: 780  VGITYRHEDMPFTAEGITPDIIINPHAIPSRMTIGHLIECLLSKLATLIGNEGDATPFTE 839

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            +TV+++S+ L + GYQ RG E MY+GH+GR+L A ++LGPTYYQRLKH
Sbjct: 840  LTVESVSQLLRENGYQSRGLEVMYHGHSGRKLQAQVYLGPTYYQRLKH 887


>gi|45545345|gb|AAS67520.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Pneumocystis carinii]
          Length = 898

 Score = 1199 bits (3103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/901 (63%), Positives = 715/901 (79%), Gaps = 38/901 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKV+IAQE+ + N V VFKK  P+  +YVAE+RS  E  ++  S   ++++S++  KG 
Sbjct: 1    SEKVIIAQERSAANTVQVFKKPAPSAVSYVAEIRSAIEKSSKLMSNFQIKLMSKSIEKG- 59

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
             +GQ IRA LPYIR +IPI+IVFRALG V D+DI+EHICYD  D QM+E+L+P +EEAFV
Sbjct: 60   -AGQTIRACLPYIRNDIPIVIVFRALGVVPDRDIMEHICYDPNDHQMLEMLKPCIEEAFV 118

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ ++VALD+IGKRG+ VG+ R+KR++YA++ILQKE+LPH+ T +  ET+KA++ GY+IH
Sbjct: 119  IQEREVALDFIGKRGSAVGINREKRLRYAQDILQKELLPHITTTEGYETRKAFFLGYMIH 178

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLLCAL RR  DDRDH+G KRLDLAGPLL  LFRMLF+KLT+DV  Y+QKCV+  ++ N
Sbjct: 179  RLLLCALERRDPDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDVYKYMQKCVETNREFN 238

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K+ TIT GL+YSLATGNWG Q      R GVSQVLNR T+ASTLSHLRR N+PIG
Sbjct: 239  LTLAVKSNTITHGLRYSLATGNWGDQKKIMSARVGVSQVLNRYTFASTLSHLRRTNTPIG 298

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGSA+ PI+EFLEEWG 
Sbjct: 299  RDGKVAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYVSVGSASAPIIEFLEEWGM 358

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            EN E+ +P+  P  TK+FVNG W+G+HRDP  LV+T++ LRR++D++ EV VVRDIR KE
Sbjct: 359  ENLEDYNPSATPNTTKVFVNGVWLGVHRDPYHLVETIKSLRRKLDISVEVSVVRDIREKE 418

Query: 617  LRIYTDYGRCSRPLFIVEKQ-------RLLIKK---RDIIALQQR---ESPEDGGWHDLV 663
            LRI+TD GR  RPLFIV+         +L++KK   + II  + R   ++    GW  LV
Sbjct: 419  LRIFTDAGRVCRPLFIVDNNPESNSRGQLMLKKEHVQKIIDNKNRTELDNESKFGWSSLV 478

Query: 664  AKGFIEYIDTEEEETTMISMTINDL-----VQA------------RLHPEEAYADTY--T 704
            A G +EYID EEEET MI+MT  DL     +QA            R+ P  +  +TY  T
Sbjct: 479  ANGIVEYIDAEEEETVMIAMTPEDLEATRQIQAGYKIADEIDPARRVKPLVS-PNTYLWT 537

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQA+G+++TNYQ RMDT+A +LYYP
Sbjct: 538  HCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAIGVFLTNYQVRMDTMANILYYP 597

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+F+RSY
Sbjct: 598  QKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIFYRSY 657

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
             D+EKK+G  + E+F +P R+N + ++HG+YDK++DDGL  PGTRVSG+D+IIGKT PI 
Sbjct: 658  MDQEKKIGMQIMEEFEKPMRNNCLKLKHGTYDKIEDDGLIAPGTRVSGDDIIIGKTAPIP 717

Query: 885  QD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 942
             + E  GQ +++ T+RD S  LR +E+G++DQV+++TNA+GL+FVKVR+RS RIPQIGDK
Sbjct: 718  PNAEELGQRTKFHTKRDVSTPLRSTESGIIDQVMVSTNAEGLKFVKVRMRSTRIPQIGDK 777

Query: 943  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
            F+SRHGQKGT+G+TY  EDMP+T EGI PDII+NPHAIPSRMT+  LIEC++ KV+A  G
Sbjct: 778  FASRHGQKGTIGITYRHEDMPFTSEGIVPDIIINPHAIPSRMTVAHLIECLLSKVSALSG 837

Query: 1003 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             EGDATPFTDVTV+ ISK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRLKHMV
Sbjct: 838  YEGDATPFTDVTVEAISKMLRQHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLKHMV 897

Query: 1063 D 1063
            D
Sbjct: 898  D 898


>gi|89274898|gb|ABD65890.1| RNA polymerase II second largest subunit, partial [Polyporus
            squamosus]
          Length = 898

 Score = 1199 bits (3103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/901 (64%), Positives = 716/901 (79%), Gaps = 27/901 (2%)

Query: 213  VYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRT 272
            VYVF K QP+  +++AE+RS  E   +  S   V++  R+  +  S G  ++AT+PYI+ 
Sbjct: 1    VYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRSKER--SLGNVMKATIPYIKV 58

Query: 273  EIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRG 332
            +IPI +VFRALG ++D+DILEHICYD QD QM+E+L+P ++E FVIQ++++ALD+IG RG
Sbjct: 59   DIPIWVVFRALGVISDRDILEHICYDLQDNQMLEMLKPCIDEGFVIQDREIALDFIGNRG 118

Query: 333  ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDR 392
             T+G+ R++R++YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDR
Sbjct: 119  TTIGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDR 178

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLFRKLT+DV  ++QKCV+  K+ NL  A+K  TIT+GLK
Sbjct: 179  DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRHLQKCVEMNKEFNLSLAVKHNTITNGLK 238

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +   +AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 239  YSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 298

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + A  P  T
Sbjct: 299  WGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENTHASTP-CT 357

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LV+TLRRLRR+ D+N EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 358  KVFVNGVWMGVHRDPAGLVRTLRRLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLF 417

Query: 632  IVEKQRLLIKKRDIIAL-QQRESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 689
            IVE+Q+LL++K+ I  L + +E P  +  W +++ +G IE +D EEEET MI MT  DL 
Sbjct: 418  IVEEQQLLVQKKHIENLVRSKEDPSYEYNWDNMIKEGVIELLDAEEEETVMICMTPEDLE 477

Query: 690  QARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSP 730
             +RL       H +E + D            T+THCEIHPS+ILGVCASIIPFPDHNQSP
Sbjct: 478  NSRLQAAGIDPHADEEHVDPSARLKAPTFSHTWTHCEIHPSMILGVCASIIPFPDHNQSP 537

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIV
Sbjct: 538  RNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIV 597

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M
Sbjct: 598  AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRM 657

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 908
            +HG+YDKL++DGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E
Sbjct: 658  KHGTYDKLENDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTE 717

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
             G+VDQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 718  QGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEG 777

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            ITPDII+NPHAIPSRMTIG L+EC++ K+A  +G EGDATPFT++TV+ +S  L + GYQ
Sbjct: 778  ITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTNLTVETVSTFLRQKGYQ 837

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
             RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRD
Sbjct: 838  SRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRD 897

Query: 1089 G 1089
            G
Sbjct: 898  G 898


>gi|55583696|gb|AAV53367.1| RNA polymerase II second largest subunit [Phyllotopsis sp. MB35]
          Length = 889

 Score = 1199 bits (3102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/891 (64%), Positives = 701/891 (78%), Gaps = 27/891 (3%)

Query: 220  QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 279
            QP+   ++AE+RS  E   +  S   V+M  R   +  S G  ++AT+PYI+ +IPI +V
Sbjct: 2    QPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMKATIPYIKVDIPIWVV 59

Query: 280  FRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR 339
            FR LG ++D+DILEHICYD QD QM+E+L+P +++ FVIQ+++VALD+IG RG T G++R
Sbjct: 60   FRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSR 119

Query: 340  DKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKR 399
            ++RI+YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KR
Sbjct: 120  ERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKR 179

Query: 400  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 459
            LDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGN
Sbjct: 180  LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGN 239

Query: 460  WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
            WG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPA
Sbjct: 240  WGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 299

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG 
Sbjct: 300  ETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGV 358

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L
Sbjct: 359  WMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQL 418

Query: 639  LIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL--- 693
             ++K+ +  L     +  E   W  LV  G IE +D EEEET MISMT  DL  +RL   
Sbjct: 419  ALQKKHVKWLNSGFNDEGEAFKWEHLVKNGIIELLDAEEEETVMISMTPEDLENSRLQQS 478

Query: 694  ----HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
                H  +              A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 479  GLDPHANDGDFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 538

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSG
Sbjct: 539  MGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSG 598

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDK
Sbjct: 599  YNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPMRDNTLRMKHGTYDK 658

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQV 915
            L+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQV
Sbjct: 659  LEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQV 718

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            L+TTN++G +FVKVRVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+
Sbjct: 719  LITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIII 778

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035
            NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E M
Sbjct: 779  NPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVM 838

Query: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            ++GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRS
Sbjct: 839  FHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRS 889


>gi|120561253|gb|ABM27011.1| RNA polymerase II second largest subunit, partial [Funneliformis
            mosseae]
          Length = 883

 Score = 1198 bits (3099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/888 (63%), Positives = 706/888 (79%), Gaps = 36/888 (4%)

Query: 206  EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 265
            E+M+TN VYVF K  P+ ++Y AE+RS  E  ++  S++ ++++++T+ KG ++GQ+I+A
Sbjct: 1    ERMATNTVYVFTKSPPSPFSYTAEIRSAMEKGSKLASSLTIKLMAKTAEKG-ATGQFIQA 59

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
            T+PYI+ ++P++I FRALG V+D+D L+++CYD  D QM+E L+P +EEAF +Q+ +VA 
Sbjct: 60   TMPYIKKDVPVVIAFRALGAVSDQDFLQYVCYDPSDHQMLEALKPCIEEAFAVQSMEVAA 119

Query: 326  DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 385
            D+IG+RG T G TRDKRIKYAK+ILQKE+LPHV T   CE +KA++ GY++HRLLL ALG
Sbjct: 120  DWIGRRGTTTGATRDKRIKYAKDILQKELLPHVSTEYGCEKRKAFFLGYMVHRLLLAALG 179

Query: 386  RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
            RR  DDRDHYG KR+DLAGPLL  LFRMLF+KLT+DV  Y++KC+D+ ++ NL  AIKA+
Sbjct: 180  RRELDDRDHYGKKRMDLAGPLLASLFRMLFKKLTKDVSIYLRKCIDSNREFNLNLAIKAQ 239

Query: 446  TITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
            TIT+GLKYSLATGNWG Q  A  +RAGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKP
Sbjct: 240  TITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIAKP 299

Query: 505  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-EEIS 563
            RQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI+VGSA+ PI++FLEE+G  N  ++  
Sbjct: 300  RQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYISVGSASKPIIDFLEEYGMINLNQQFD 359

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
            PA I   TK+FVNG W GI   PE L  TL+ LRR VDV+ EV VVRDIR +ELRIYTD 
Sbjct: 360  PANIKDNTKVFVNGKWAGISSSPEQLSYTLKGLRRTVDVSPEVSVVRDIRERELRIYTDA 419

Query: 624  GRCSRPLFIVEKQRL-----LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEET 678
            GR  RPLFIVE +RL     LI+K D+  +++       GW DL++   IEYID EEEET
Sbjct: 420  GRVCRPLFIVENERLRITKGLIQKLDVFKMKKMTF----GWQDLISNSVIEYIDAEEEET 475

Query: 679  TMISMTINDLVQARL------------HPEEAYA----------DTYTHCEIHPSLILGV 716
             MI MT  DL  AR+            H  +  A           ++THCEIHPS+ILG+
Sbjct: 476  VMICMTPEDLAAARVFHETGETKQEKAHERDVAARVKSETNLKIHSWTHCEIHPSMILGI 535

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA +LYYPQKPLVTTRAME 
Sbjct: 536  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLANILYYPQKPLVTTRAMEF 595

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+F+RSY D+EKK+G L  
Sbjct: 596  LRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIFYRSYMDQEKKVGMLTI 655

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASR 894
            E+F +P +  T+ ++HG+Y+KL++DGL  PGTRVSG+D+IIGK TPIS D  + GQ  + 
Sbjct: 656  EEFEKPTKETTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKVTPISPDTVELGQRKTS 715

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            +T+RD S  +R +ETG+VDQV++TTNA+G++FVKVRVRS R+PQ+GDKF+SRHGQKGT+G
Sbjct: 716  HTKRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVRVRSTRVPQMGDKFASRHGQKGTIG 775

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP+T EGITPD+++NPHAIPSRMTIG ++EC++GKV+   G+EGDATPFTDVT
Sbjct: 776  ITYRQEDMPFTAEGITPDLVINPHAIPSRMTIGHMVECLLGKVSTLTGQEGDATPFTDVT 835

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            V+ IS++L   GYQ RGFE MYNGHTGR+L+A +FLGPTYYQRLKHMV
Sbjct: 836  VEAISQSLRSQGYQSRGFEVMYNGHTGRKLSAQVFLGPTYYQRLKHMV 883


>gi|6606113|gb|AAF19069.1|AF107797_1 DNA-dependent RNA polymerase II RPB140 [Capronia mansonii]
          Length = 1029

 Score = 1198 bits (3099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/1029 (57%), Positives = 738/1029 (71%), Gaps = 48/1029 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VF+K  P  + ++AE+RS+ +   R  S   V++  R     G
Sbjct: 1    SEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGARMMSQCTVKLFRRVDGPEG 60

Query: 258  SS-GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
            +     IR  LPY++ +IP++IVFRAL  V+D DILE IC+D  D +MM++L  SL+E  
Sbjct: 61   TKIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQEGQ 120

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
             IQ   +A D+I +RG    +   +R K+A +ILQKE LPH+G G     +KA++ GY++
Sbjct: 121  PIQGADLARDFIARRGNVPSLKSHERQKHATDILQKEFLPHIGQGPDATARKAFFLGYMV 180

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            +RLL CALGR   DDRDH G KRLDLAGPL+  LFR+ F K T+D   Y+QK V++G+ +
Sbjct: 181  NRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFYRYMQKRVESGQPI 240

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            N+    K   ITSGLKYSLATGNWG Q      +AGVSQVL+R T++STLSHLRR N+PI
Sbjct: 241  NIMAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFSSTLSHLRRTNAPI 300

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL+LM  +T      P+L ++    
Sbjct: 301  GREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETGPLLNYVMTKH 360

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGI-HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
             E  E+  P + P+ATKIFV+G W  +  RDP+ LV  LR+LRR+   ++ V +V DIR 
Sbjct: 361  VEALEDWEPRLNPRATKIFVDGVWFAVVLRDPKRLVDDLRKLRRKGVFDSHVSLVWDIRE 420

Query: 615  KELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDIIALQQRESPEDGG--------- 658
            KE +I  D GR  RPLF+VE  R       L++ K  I  L Q    ++ G         
Sbjct: 421  KEFKISGDSGRIVRPLFVVETDRSSENLGNLVLNKEHINKLDQTAYLKESGFQWTDEIRP 480

Query: 659  --WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR---------------------LHP 695
              W DL+  G +EY+D EEEET MI MT   L  ++                     L+P
Sbjct: 481  YGWTDLLESGVVEYLDAEEEETAMICMTPEALADSKARWLGMEIENEDDPLRRNDPLLNP 540

Query: 696  EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
               +A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+
Sbjct: 541  ---HAHTFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRME 597

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL  T AM++L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG 
Sbjct: 598  TMANILYYPQKPLARTMAMDYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGL 657

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLF+R+Y+D EK +G  V E F +P RS+T+ ++HG+YDK+D+DG+  PG RVSGED+
Sbjct: 658  FRSLFYRTYQDSEKSVGHSVVEQFEKPTRSDTLRLKHGTYDKIDEDGIVAPGVRVSGEDI 717

Query: 876  IIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            I+GKT P++ D E  GQ   ++ +RD S  LR +E+G+VDQV+LTT A+G RF KVRVR+
Sbjct: 718  IMGKTAPMAPDAEELGQRLKQHIKRDVSTPLRSTESGIVDQVMLTTTAEGHRFAKVRVRT 777

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC 
Sbjct: 778  TKVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQ 837

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1053
            + KVA   G EGDATPFT VTV  +S+ L   GYQ RGFE MYNGHTGR++ A +FLGPT
Sbjct: 838  LSKVATLRGDEGDATPFTKVTVTQVSELLRTMGYQSRGFEVMYNGHTGRKMVAQVFLGPT 897

Query: 1054 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 1113
            YYQRL+HMVDDKIHSR RGP QILTRQP EGR+RDGGLRFGEMERDCMIAHGAS FLKER
Sbjct: 898  YYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKER 957

Query: 1114 LFDQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1172
            LFD SD +RVHVC+ CGL+  IA LKKN+FEC+ C NK  I Q+++PYA KLLFQEL AM
Sbjct: 958  LFDVSDPFRVHVCDICGLMTVIAKLKKNTFECKNCNNKNKISQIYLPYAAKLLFQELWAM 1017

Query: 1173 AIAPRMLTK 1181
             IA R+ TK
Sbjct: 1018 NIAARLYTK 1026


>gi|67810558|gb|AAY81998.1| RNA polymerase II second largest subunit [Spirogyra sp. UWCC FW670]
          Length = 670

 Score = 1197 bits (3098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/669 (82%), Positives = 613/669 (91%), Gaps = 1/669 (0%)

Query: 520  TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 579
            TPEGQA GLVKNLALM YITVGS+A PIL+FLEEW  EN EEISPA+IP ATKIFVNGCW
Sbjct: 2    TPEGQAVGLVKNLALMTYITVGSSANPILDFLEEWTMENLEEISPALIPTATKIFVNGCW 61

Query: 580  VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 639
            VG+HRDPEML++TLR+LRR+++V +EV +VRD+RL ELR+YTDYGRCSRPLFIV+ QRLL
Sbjct: 62   VGVHRDPEMLIRTLRKLRRQLNVKSEVSMVRDVRLNELRLYTDYGRCSRPLFIVKNQRLL 121

Query: 640  IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 699
            IKK DI ALQQ+E     GWH L+AKG IEY+DT EEETTMI+MTIND+V AR +PE AY
Sbjct: 122  IKKEDIDALQQKEI-TGVGWHQLIAKGIIEYVDTMEEETTMIAMTINDVVSARANPETAY 180

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
            +DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAY
Sbjct: 181  SDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAY 240

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            +LYYPQKPLVTTRAMEHLHFR+LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF RS+
Sbjct: 241  ILYYPQKPLVTTRAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFHRSI 300

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            F+RSYRDEEKK GTL KE+F +P+R  T GMRHGSYDKLD DG+APPGTRV+GEDVIIGK
Sbjct: 301  FYRSYRDEEKKQGTLTKEEFEKPNRDITSGMRHGSYDKLDSDGIAPPGTRVAGEDVIIGK 360

Query: 880  TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            T P+ QD++  QA R+T+RD S +LRHSE+GM+DQV+LT N DG RFVK+RVRS+RIPQI
Sbjct: 361  TMPLPQDDSGTQAQRFTKRDQSTTLRHSESGMIDQVILTINNDGFRFVKIRVRSIRIPQI 420

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKF+SRHGQKGT+GMTYTQEDMP++ EGI+PD++VNPHAIPSRMTIG LIEC+MGKVAA
Sbjct: 421  GDKFASRHGQKGTIGMTYTQEDMPFSQEGISPDLVVNPHAIPSRMTIGHLIECLMGKVAA 480

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
             MGKEGDATPFTDVTVD+IS+ALH CGYQMRGFE MYNGHTGR+L A IFLGPTYYQRLK
Sbjct: 481  LMGKEGDATPFTDVTVDSISRALHSCGYQMRGFEVMYNGHTGRKLQAHIFLGPTYYQRLK 540

Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
            HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSD
Sbjct: 541  HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSD 600

Query: 1120 AYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            AYRVHVCEHCGLIA ANLKK+ FECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRM+
Sbjct: 601  AYRVHVCEHCGLIANANLKKSFFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMM 660

Query: 1180 TKEDTKQSK 1188
            T++  K  +
Sbjct: 661  TRDLPKSKR 669


>gi|120561255|gb|ABM27012.1| RNA polymerase II second largest subunit, partial [Funneliformis
            mosseae]
          Length = 883

 Score = 1197 bits (3097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/888 (63%), Positives = 706/888 (79%), Gaps = 36/888 (4%)

Query: 206  EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 265
            E+M+TN VYVF K  P+ ++Y AE+RS  E  ++  S++ ++++++T+ KG ++GQ+I+A
Sbjct: 1    ERMATNTVYVFTKSPPSPFSYTAEIRSAMEKGSKLASSLTIKLMAKTAEKG-ATGQFIQA 59

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
            T+PYI+ ++P++I FRALG V+D+D L+++CYD  D QM+E L+P +EEAF +Q+ +VA 
Sbjct: 60   TMPYIKKDVPVVIAFRALGAVSDQDFLQYVCYDPSDHQMLEALKPCIEEAFAVQSMEVAA 119

Query: 326  DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 385
            D+IG+RG T G TRDKRIKYAK+ILQKE+LPHV T   CE +KA++ GY++HRLLL ALG
Sbjct: 120  DWIGRRGTTTGATRDKRIKYAKDILQKELLPHVSTEYGCEKRKAFFLGYMVHRLLLAALG 179

Query: 386  RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
            RR  DDRDHYG KR+DLAGPLL  LFRMLF+KLT+DV  Y++KC+D+ ++ NL  AIKA+
Sbjct: 180  RRELDDRDHYGKKRMDLAGPLLASLFRMLFKKLTKDVSIYLRKCIDSNREFNLNLAIKAQ 239

Query: 446  TITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
            TIT+GLKYSLATGNWG Q  A  +RAGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKP
Sbjct: 240  TITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIAKP 299

Query: 505  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-EEIS 563
            RQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI+VGSA+ PI++FLEE+G  N  ++  
Sbjct: 300  RQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYISVGSASKPIIDFLEEYGMINLNQQFD 359

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
            PA I   TK+FVNG W GI   PE L  TL+ LRR VDV+ EV VVRDIR +ELRIYTD 
Sbjct: 360  PANIKDNTKVFVNGKWAGISSSPEQLSYTLKGLRRTVDVSPEVSVVRDIRERELRIYTDA 419

Query: 624  GRCSRPLFIVEKQRL-----LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEET 678
            GR  RPLFIVE +RL     LI+K D+  +++       GW DL++   IEYID EEEET
Sbjct: 420  GRVCRPLFIVENERLRITKGLIQKLDVFKMKKMTF----GWQDLISNSVIEYIDAEEEET 475

Query: 679  TMISMTINDLVQARL------------HPEEAYA----------DTYTHCEIHPSLILGV 716
             MI MT  DL  AR+            H  +  A           ++THCEIHPS+ILG+
Sbjct: 476  VMICMTPEDLAAARVFHETGETKQEKAHERDVAARVKSETNLKIHSWTHCEIHPSMILGI 535

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA +LYYPQKPLVTTRAME 
Sbjct: 536  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLANILYYPQKPLVTTRAMEF 595

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+F+RSY D+EKK+G L  
Sbjct: 596  LRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIFYRSYMDQEKKVGMLTI 655

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASR 894
            E+F +P +  T+ ++HG+Y+KL++DGL  PGTRVSG+D+IIGK TPIS D  + GQ  + 
Sbjct: 656  EEFEKPTKETTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKVTPISPDTVELGQRKTT 715

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            +T+RD S  +R +ETG+VDQV++TTNA+G++FVKVRVRS R+PQ+GDKF+SRHGQKGT+G
Sbjct: 716  HTKRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVRVRSTRVPQMGDKFASRHGQKGTIG 775

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP+T EGITPD+++NPHAIPSRMTIG ++EC++GKV+   G+EGDATPFTDVT
Sbjct: 776  ITYRQEDMPFTAEGITPDLVINPHAIPSRMTIGHMVECLLGKVSTLTGQEGDATPFTDVT 835

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            V+ IS++L   GYQ RGFE MYNGHTGR+L+A +FLGPTYYQRLKHMV
Sbjct: 836  VEAISQSLRSQGYQSRGFEVMYNGHTGRKLSAQVFLGPTYYQRLKHMV 883


>gi|55583692|gb|AAV53365.1| RNA polymerase II second largest subunit [Hygrophoropsis aurantiaca]
          Length = 863

 Score = 1197 bits (3096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/857 (66%), Positives = 687/857 (80%), Gaps = 26/857 (3%)

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            S G  ++AT+PYIR +IPI +VFRALG ++D+DILEHICYD QD QM+E+L+P +++ FV
Sbjct: 8    SLGNVMKATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFV 67

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++VALD+IG RG T G++R++RI+YA+EILQKEMLPHV   +  E+KKAY+FGY+IH
Sbjct: 68   IQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIH 127

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL AL RR  DDRDH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N
Sbjct: 128  RLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFN 187

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K +TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+G
Sbjct: 188  LSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLG 247

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            REGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG 
Sbjct: 248  REGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGL 307

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E+ EE + +  P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +E
Sbjct: 308  ESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERE 366

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDT 673
            LR+YTD GR  RPLFIVE Q+L+++K+ +  L Q    EDG    W  L+  G IE +D 
Sbjct: 367  LRLYTDAGRVCRPLFIVENQQLMLQKKHVKWLNQGYREEDGEEYKWEQLIKGGIIELLDA 426

Query: 674  EEEETTMISMTINDLVQARLH-----PEEAYAD--------------TYTHCEIHPSLIL 714
            EEEET MISMT  DL  +RL      P+    D              T+THCEIHPS+IL
Sbjct: 427  EEEETVMISMTPEDLENSRLQSAGIDPQSNDVDYDPAARLKAGINAHTWTHCEIHPSMIL 486

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+M
Sbjct: 487  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSM 546

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G  
Sbjct: 547  EYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQ 606

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 893
              E+F +P R  T+ M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +
Sbjct: 607  QLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRT 666

Query: 894  R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
            R +TRRD S  L+ +E G+VDQVL+TTN++G +FVKVRVRS RIPQ GDKF+SRHGQKGT
Sbjct: 667  RTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGT 726

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            +G+TY QEDMP+T EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD
Sbjct: 727  IGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTD 786

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 1072
            +TV+++S  L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RG
Sbjct: 787  LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARG 846

Query: 1073 PVQILTRQPAEGRSRDG 1089
            PVQILTRQP EGRSRDG
Sbjct: 847  PVQILTRQPVEGRSRDG 863


>gi|120561257|gb|ABM27013.1| RNA polymerase II second largest subunit, partial [Gigaspora
            gigantea]
          Length = 894

 Score = 1197 bits (3096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/895 (63%), Positives = 698/895 (77%), Gaps = 40/895 (4%)

Query: 206  EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 265
            E+M+TN VYVF K  P+ Y+Y AE+RS  E  ++  S++ V+ML++T+ KG S+GQ+I+A
Sbjct: 1    ERMATNTVYVFAKSPPSPYSYTAEIRSAMEKGSKLASSLTVKMLAKTAEKG-STGQFIQA 59

Query: 266  TLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVAL 325
            T+PYI+ ++P++I FRALG V+D+D L+++CYD  D QMME L+P +EEAF +Q+ +VA 
Sbjct: 60   TMPYIKKDVPVVIAFRALGAVSDQDFLQYVCYDPNDNQMMEALKPCIEEAFAVQSTEVAA 119

Query: 326  DYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALG 385
            D+IG+RG T G TRDKRIKYAKEILQKE+LPHV T   CE +KA++ GY++HRLLL ALG
Sbjct: 120  DWIGRRGTTTGATRDKRIKYAKEILQKELLPHVSTEYGCEKRKAFFLGYMVHRLLLAALG 179

Query: 386  RRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
            RR  DDRDHYG KR+DLAGPLL  LFRMLF+KLT+D+  Y++KC+D  ++ NL  AIKA+
Sbjct: 180  RRELDDRDHYGKKRMDLAGPLLASLFRMLFKKLTKDISIYLRKCIDTSREFNLHLAIKAQ 239

Query: 446  TITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
            TIT+GLKYSLATGNWG Q  A  +RAGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKP
Sbjct: 240  TITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIAKP 299

Query: 505  RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-EEIS 563
            RQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI+VGS++ PI++FLEE+G  N  ++  
Sbjct: 300  RQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYISVGSSSKPIVDFLEEYGMINLNQQFD 359

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
            PA I   TK+FVNG W GI   PE L  TLR LRR VDV+ EV VVRDIR KELRIYTD 
Sbjct: 360  PANIRDNTKVFVNGKWAGISTAPEQLANTLRGLRRSVDVSPEVSVVRDIREKELRIYTDA 419

Query: 624  GRCSRPLFIVEKQRLLIKKRDIIAL-------------QQRESPEDGGWHDLVAKGFIEY 670
            GR  RPLFIVE Q L+I K  I  L             ++R+  +   WHDL++ G IEY
Sbjct: 420  GRVCRPLFIVEDQCLVISKELIDNLDDIHGENAEKQSQKRRQDRQVYVWHDLISNGAIEY 479

Query: 671  IDTEEEETTMISMTINDL---------------------VQARLHPEEAYA-DTYTHCEI 708
            ID EEEET MI MT  DL                     + AR+  E   +  T+THCEI
Sbjct: 480  IDAEEEETVMICMTPEDLAASRNYYQTGISQASKAHEKDIAARVKSESNLSIHTWTHCEI 539

Query: 709  HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 768
            HPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA +LYYPQKPL
Sbjct: 540  HPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLANILYYPQKPL 599

Query: 769  VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE 828
            VTTRAME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+F+RSY D+E
Sbjct: 600  VTTRAMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIFYRSYMDQE 659

Query: 829  KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-- 886
            KK+G L  E+F +P R  T+ ++HG+Y+KL+DDGL  PGTRVSG+D+IIGK TPI +   
Sbjct: 660  KKVGILSIEEFDKPTRETTLRLKHGTYEKLEDDGLIAPGTRVSGDDIIIGKVTPIPEHTI 719

Query: 887  EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 946
            E   +   +T RD S  +R +E G+VDQV++TTNA+G++FVKVRVRS RIPQ+GDKF+SR
Sbjct: 720  ELGQRKDSHTHRDASTPMRSTENGIVDQVMVTTNAEGMKFVKVRVRSTRIPQMGDKFASR 779

Query: 947  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
            HGQKGT+G+TY QEDMP+T EGITPD+I+NPHAIPSRMTIG L+EC++GKV+   G+EGD
Sbjct: 780  HGQKGTIGITYRQEDMPFTSEGITPDLIINPHAIPSRMTIGHLVECLLGKVSTLTGQEGD 839

Query: 1007 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 1061
            ATPFTDVTV+ IS +L + GY  RGFE MYNGHTGR+L A +FLGPTYYQRLKHM
Sbjct: 840  ATPFTDVTVEAISHSLRQNGYHSRGFEVMYNGHTGRKLAAQVFLGPTYYQRLKHM 894


>gi|344247350|gb|EGW03454.1| DNA-directed RNA polymerase II subunit RPB2 [Cricetulus griseus]
          Length = 807

 Score = 1196 bits (3093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/811 (70%), Positives = 666/811 (82%), Gaps = 10/811 (1%)

Query: 375  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
            ++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++VR Y QK +D GK
Sbjct: 1    MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGK 60

Query: 435  DVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
            D NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRRLNS
Sbjct: 61   DFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS 120

Query: 494  PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 553
            PIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEE
Sbjct: 121  PIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEE 180

Query: 554  WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV-NTEVGVVRDI 612
            W  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++D+  +EV ++RDI
Sbjct: 181  WSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDI 240

Query: 613  RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYID 672
            R +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W DLVA G +EYID
Sbjct: 241  REREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSWQDLVASGVVEYID 299

Query: 673  TEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
            T EEET M++MT +DL +     E AY  TYTHCEIHPS+ILGVCASIIPFPDHNQSPRN
Sbjct: 300  TLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 355

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L FR+LPAGIN+IVAI
Sbjct: 356  TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 415

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
            A Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G   +E F +P R    GMRH
Sbjct: 416  ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRH 475

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETG 910
              YDKLDDDGL  PG RVSG+DVIIGKT   P ++DE +    RYT+RD S  LR SETG
Sbjct: 476  AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETG 535

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDMP+T EGIT
Sbjct: 536  IVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGIT 595

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQM 1029
            PDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V  IS  L   GY +
Sbjct: 596  PDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHL 655

Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1089
            RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QIL RQP EGRSRDG
Sbjct: 656  RGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDG 715

Query: 1090 GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN 1149
            GLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC  CG++AIAN + +++ECRGC+N
Sbjct: 716  GLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRN 775

Query: 1150 KTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            KT I  V +PYACKLLFQELM+M+IAPRM++
Sbjct: 776  KTQISLVRMPYACKLLFQELMSMSIAPRMMS 806


>gi|89274890|gb|ABD65886.1| RNA polymerase II second largest subunit, partial [Ganoderma tsugae]
          Length = 883

 Score = 1195 bits (3091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/885 (64%), Positives = 701/885 (79%), Gaps = 26/885 (2%)

Query: 220  QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 279
            QP+  +++AE+RS  E   +  S   V++  R+  +  S G  ++AT+PYI+ +IPI +V
Sbjct: 2    QPSPISFLAEIRSAVEKGGKTISQFQVKLYHRSKER--SLGNVMKATIPYIKIDIPIWVV 59

Query: 280  FRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR 339
            FRALG ++D+DILEHICYD QD QM+E+L+P ++E FVIQ++++ALDYIG RG T G+ R
Sbjct: 60   FRALGVISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGNRGTTTGLNR 119

Query: 340  DKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKR 399
            ++R++YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KR
Sbjct: 120  ERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKR 179

Query: 400  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 459
            LDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ N+  A+K  TIT+GLKYSLATGN
Sbjct: 180  LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNISLAVKHNTITNGLKYSLATGN 239

Query: 460  WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
            WG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPA
Sbjct: 240  WGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 299

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNL+LM  I+VG+ + P++EFLEEWG E+ EE + A  P  TK+FVNG 
Sbjct: 300  ETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENAHASTP-CTKVFVNGV 358

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            W+G+HRDP  LV TLR+LRR+ D+N EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L
Sbjct: 359  WMGVHRDPVKLVSTLRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQL 418

Query: 639  LIKKRDIIAL-QQRESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL--- 693
            LI+K+ I +L + +E P     W  L+  G IE +D EEEET MI MT  DL  +RL   
Sbjct: 419  LIQKKHIESLVRAKEDPTLSYNWDSLLKDGVIELLDAEEEETVMICMTPEDLENSRLQAA 478

Query: 694  ----HPEE-----------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 738
                H +E             A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAM
Sbjct: 479  GIDPHADEENDPSARLKAPTSAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM 538

Query: 739  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 798
            GKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGY
Sbjct: 539  GKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGY 598

Query: 799  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 858
            NQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL
Sbjct: 599  NQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKL 658

Query: 859  DDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVL 916
            +DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E G+VDQVL
Sbjct: 659  EDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVL 718

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            +TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+N
Sbjct: 719  ITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIIN 778

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1036
            PHAIPSRMTIG L+EC++ K+A  +G EGDATPFTD+TV+++S+ L + GYQ RG E MY
Sbjct: 779  PHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVESVSQFLRQKGYQSRGLEIMY 838

Query: 1037 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
            +GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 839  HGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 883


>gi|55273987|gb|AAV48864.1| RNA polymerase II second largest subunit [Albatrellus higanensis]
          Length = 913

 Score = 1194 bits (3088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/914 (62%), Positives = 705/914 (77%), Gaps = 48/914 (5%)

Query: 216  FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIP 275
            F++ QP+  +++AE+RS  E   +  S   V++  R   +  S G  ++AT+PYI+ +IP
Sbjct: 3    FRQAQPSPISFLAEIRSAVEKGGKTISQFQVKLFHRNQER--SLGSVMKATIPYIKVDIP 60

Query: 276  IIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATV 335
            I +VFRALG ++D+DILEHICYD QD QM+E+L+P +++ FVIQ+++VALD+IG RG T 
Sbjct: 61   IWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTT 120

Query: 336  GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHY 395
            G+ R++R++YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+
Sbjct: 121  GLNRERRLRYAQEILQKEMLPHVSMNEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHF 180

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSL
Sbjct: 181  GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSL 240

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 241  ATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 300

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 301  VCPAETPEGQACGLVKNLSLMSVISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVF 359

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE
Sbjct: 360  VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVE 419

Query: 635  KQRLLIKKRDIIALQQR------------------ESPEDGG--------WHDLVAKGFI 668
             Q+L+I+K+ I  L +                   E P D          W  LV  G I
Sbjct: 420  NQQLVIQKKHIKMLTEAADKSKQDEEEEREKAARGEPPMDPDGEKKPEYTWDHLVRGGLI 479

Query: 669  EYIDTEEEETTMISMTINDLVQARLH-----PEEAY-----------ADTYTHCEIHPSL 712
            E +D EEEET MI MT  DL  +R       P E +           A T+THCEIHPS+
Sbjct: 480  ELLDAEEEETVMICMTPEDLYNSRTDEAQSDPNEEFDPATRLKARTNAHTWTHCEIHPSM 539

Query: 713  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 772
            ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR
Sbjct: 540  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTR 599

Query: 773  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 832
            +ME+L FR+LPAG NA+VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G
Sbjct: 600  SMEYLRFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSG 659

Query: 833  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ 891
                E+F +P R NT+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ
Sbjct: 660  VQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQ 719

Query: 892  ASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
             ++ ++RRD S  L+ +E+G++DQVLLTTNA+G +FVK+RVRS RIPQIGDKF+SRHGQK
Sbjct: 720  RTKTHSRRDVSTPLKSTESGIIDQVLLTTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQK 779

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GT+G+ Y QEDMP+T EGITPD+I+NPHAIPSRMTIG L+EC++ KVA  +G+EGDATPF
Sbjct: 780  GTIGIAYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVATLLGQEGDATPF 839

Query: 1011 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 1070
            TD+TV+++S  L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR 
Sbjct: 840  TDLTVESVSHFLREKGYQSRGLEIMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRA 899

Query: 1071 RGPVQILTRQPAEG 1084
            RGPVQILTRQP EG
Sbjct: 900  RGPVQILTRQPVEG 913


>gi|45545303|gb|AAS67499.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Aspergillus fumigatus]
          Length = 936

 Score = 1192 bits (3085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/936 (61%), Positives = 720/936 (76%), Gaps = 40/936 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK  P+   YVAE+RS  E  +R  S + +++ ++  +  G
Sbjct: 1    SEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKG 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              G  IR+TLPY++T+IPI++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FV
Sbjct: 61   GFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFV 120

Query: 318  IQNQQVALDYIGKRGAT-VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            IQ+++VALD+I KRG++   +  ++R++YA+EI+QKE+LPH+   +  ET+KA++ GY++
Sbjct: 121  IQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMV 180

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR+LF ++TRD++ YVQ+CV+  +++
Sbjct: 181  HRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVETNREI 240

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
             L   IKA T+T GLKY+LATGNWG Q  AA ++AGVSQVL+R TYASTLSHLRR N+PI
Sbjct: 241  YLNIGIKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYASTLSHLRRTNTPI 300

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +  
Sbjct: 301  GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRN 360

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             E  EE  P V P ATK+FVNG WVG+HRDP  LV T+  LRRR  ++ EV ++RDIR +
Sbjct: 361  MEVLEEFEPQVTPNATKVFVNGVWVGVHRDPAHLVNTMLSLRRRNMISHEVSLIRDIRER 420

Query: 616  ELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQRE------SPEDG----- 657
            E +I+TD GR  RPLF+V+          L++ K  I  L+Q +       PED      
Sbjct: 421  EFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKDHIRKLEQDKELPADLDPEDRRERYF 480

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARLH-----PEE------------AY 699
            GW  LV  G +EY+D EEEET MI MT  DL +  +L      PEE              
Sbjct: 481  GWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYALPEEDDPNKRVRSVLSQK 540

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
            A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A 
Sbjct: 541  AHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMAN 600

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSL
Sbjct: 601  ILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 660

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            F+R+Y D EK +G  V E F +P RS+T+GMR G+YDKLD+DG+  PG RVSGED+IIGK
Sbjct: 661  FYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGK 720

Query: 880  TTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            T P++ + E  GQ ++ +T+ D S  LR +E G+VDQVL++T+ D L+FVKVR+R+ +IP
Sbjct: 721  TAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIP 780

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKF+SRHGQKGT+G+TY QEDMP+T EG++PD+I+NPHAIPSRMTI  LIEC + KV
Sbjct: 781  QIGDKFASRHGQKGTIGITYRQEDMPFTREGVSPDLIINPHAIPSRMTIAHLIECQLSKV 840

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            +A  G EGDATPFTDVTVD+IS+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 841  SALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 900

Query: 1058 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            L+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRF
Sbjct: 901  LRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 936


>gi|520511|gb|AAA50226.1| RNA polymerase II, second largest subunit, partial [Crassostrea
            gigas]
          Length = 859

 Score = 1190 bits (3078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/865 (67%), Positives = 693/865 (80%), Gaps = 13/865 (1%)

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS--AKGGSS 259
            LIAQEKM+TN VYVF+++  +KYA+  E+RS  E  +RP ST++V M++R    AK  + 
Sbjct: 1    LIAQEKMATNTVYVFQQKD-SKYAFKTEIRSCLEHSSRPTSTLWVNMMARGGGGAKKSAI 59

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I   LPYI+ EIPIIIVFRALGFV+D+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 60   GQRIIGILPYIKQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 119

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVT++KRIKYA+EILQKEMLPHVG  DFCETKKAY+ GY++HRL
Sbjct: 120  EQNVALNFIGSRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 179

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL A+GRR  DDRDHYGNKRLDLAGPLL  LFR LFR L ++VR Y QK +D GKD NL+
Sbjct: 180  LLAAIGRREVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRLYAQKFIDRGKDFNLE 239

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK + IT GLKYSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+
Sbjct: 240  LAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRD 299

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLA+PRQLHN+QWGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 300  GKLARPRQLHNTQWGMICPAETPEGSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 359

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKEL 617
             EE+SP+ I  ATKIFVNGCWVGIHRDPE L+ TLR+LRR +D + +EV ++RDIR +E+
Sbjct: 360  LEEVSPSAIQDATKIFVNGCWVGIHRDPEQLMNTLRKLRREMDIIVSEVSMIRDIRDREI 419

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
            RIYTD GR  RPL IVE Q+LL+K+  I  L+QRE   +  W DLVA G +EYID  EEE
Sbjct: 420  RIYTDAGRICRPLLIVENQKLLLKQSHIKQLKQREY-NNYSWQDLVASGVVEYIDPLEEE 478

Query: 678  TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
            + M++MT +DL    +     Y  TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 479  SIMLAMTPDDLSDKDVQ----YCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA 534

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+  RMDTLA+ L YPQKPLVTTR+ME+L FR+LPAGIN+IVAIA Y+G
Sbjct: 535  MGKQAMGVYITNFHVRMDTLAHGLLYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTG 594

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVI+N S+I+RGFFRS FFRSY+D E K G   +E F +P R N  GMR   YDK
Sbjct: 595  YNQEDSVIINASAIERGFFRSFFFRSYKDSESKKGLDQEEIFEKPTRENVQGMRQAVYDK 654

Query: 858  LDDDGLAPPGTRVSGEDVIIGK--TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LD+DG+  PG RVSG+DV+IGK  T P ++DE +G   R+T+RD S+ +R SETG++DQV
Sbjct: 655  LDEDGIISPGIRVSGDDVLIGKTLTLPANEDELEGTTKRFTKRDASVFMRRSETGIIDQV 714

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            ++T N +G +F K+RVR+V+ PQIGDKF+SRHGQKGT G+TY QEDMP+T EGITPDII+
Sbjct: 715  MITLNQEGYKFCKIRVRTVKTPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGITPDIII 774

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFET 1034
            NPHA+PSRMTIG LIEC+ GKVAA+ G+ GDATPF D V V  +S  LH+ GY  RG E 
Sbjct: 775  NPHAVPSRMTIGHLIECLQGKVAANKGEIGDATPFNDAVNVQKVSNLLHQYGYHQRGNEV 834

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLK 1059
            ++NG TGR+L A IFLGPTYYQRLK
Sbjct: 835  LFNGFTGRKLNAQIFLGPTYYQRLK 859


>gi|88976158|gb|ABD59039.1| RNA polymerase II second largest subunit, partial [Macrolepiota
            dolichaula]
          Length = 882

 Score = 1187 bits (3070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/885 (63%), Positives = 695/885 (78%), Gaps = 27/885 (3%)

Query: 218  KRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 277
            K QP+   ++AE+RS  E   +  S   V+M  R   +  S G  ++AT+PYI+ +IPI 
Sbjct: 1    KAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMKATIPYIKVDIPIW 58

Query: 278  IVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGV 337
            +VFR LG ++D+DILEHICYD QD QM+E+L+P +++ FVIQ+++VALD+IG RG T G+
Sbjct: 59   VVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGL 118

Query: 338  TRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGN 397
            +R++RI+YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G 
Sbjct: 119  SRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGK 178

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 179  KRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLAT 238

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 239  GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 298

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 299  PAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVN 357

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIVE Q
Sbjct: 358  GVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQ 417

Query: 637  RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL- 693
            +LL++K+ I  L     E   +  W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 418  QLLLQKKHIRWLNSSFDEEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQ 477

Query: 694  ------HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
                  H  +             +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 478  AAGVDPHANDGDFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 537

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 538  SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 597

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+Y
Sbjct: 598  SGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTY 657

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 913
            DKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VD
Sbjct: 658  DKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVD 717

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+
Sbjct: 718  QVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDL 777

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            ++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 778  VINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLE 837

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
             MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILT
Sbjct: 838  VMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILT 882


>gi|6606135|gb|AAF19080.1|AF107808_1 DNA-dependent RNA polymerase II RPB140, partial [Sclerotinia
            sclerotiorum]
          Length = 938

 Score = 1180 bits (3053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/938 (59%), Positives = 716/938 (76%), Gaps = 42/938 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK      +Y+AE+RS  E  +R  S++ +++  +  +  G
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPANQAVSYLAEIRSALEKGSRLISSLQIKLYDKGDSGRG 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              G+ +++TLPYI+ +IPI IVFRALG V+D+DIL HICYD  DTQM+E+L+P +EEAFV
Sbjct: 61   GFGKTVKSTLPYIKQDIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFV 120

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++VALD+IGKRG    +TRDKRIKYA++I+QKE+LPH+   +  ET+KA++ GY++H
Sbjct: 121  IQDREVALDFIGKRGNGTSLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVH 180

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            +LL CALGRR  DDRDH+G KRLDLAGPLL  LFR LFR+LT DV  Y+Q+CV+N ++ N
Sbjct: 181  KLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDVYRYLQRCVENNREFN 240

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L   +K+ TIT+GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIG
Sbjct: 241  LTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIG 300

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM Y+TVG+ + PI+EF+ +   
Sbjct: 301  RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRNM 360

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E  EE  P   P ATK+FVNG WVG+HRDP  LVK ++ LRR   ++ EV ++R+IR +E
Sbjct: 361  EVLEEYEPLRAPNATKVFVNGVWVGVHRDPAHLVKCVQDLRRSHLISHEVSLIREIRDRE 420

Query: 617  LRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG------------ 657
             +I+TD GR  RPL +++       K  L++ K  I  L+  +S                
Sbjct: 421  FKIFTDAGRVCRPLLVIDNDPDSPNKGNLVLNKDHIRRLEDDQSLPSNMDKDEKVHHGYY 480

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-------LHPEEA------------ 698
            G+  L+  G +EY+D EEEET MI+MT  DL  +R       + P+++            
Sbjct: 481  GFQGLINDGVVEYLDAEEEETVMITMTPEDLDISRQLQAGYQIRPDDSGDLNKRVKAPIN 540

Query: 699  -YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
              A  +THCEIHPS+ILG+CASIIPFPDHNQSPRN YQSAMGKQAMG+++TN+  RMDT+
Sbjct: 541  PTAHVWTHCEIHPSMILGICASIIPFPDHNQSPRNCYQSAMGKQAMGVFLTNFDVRMDTM 600

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FR
Sbjct: 601  ANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 660

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLF+R+Y D+EK++G  V E F +P RS+T+ ++ G+Y+KLDDDG+  PG RV+G D+II
Sbjct: 661  SLFYRAYTDQEKRIGMNVVEQFEKPYRSDTLKLKQGTYEKLDDDGIVAPGVRVTGADIII 720

Query: 878  GKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKT PI+ D E  GQ ++ + +RD S  LR +E+G+VDQVLLTTNA+GLRFVKVR+R+ +
Sbjct: 721  GKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTK 780

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            IPQIGDKF+SRHGQKGT+G+TY Q+DMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + 
Sbjct: 781  IPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLS 840

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KV++  G EGDATPFT+VTVD++SK L   GY  RGFE MY+GHTGR++ A +FLGPTYY
Sbjct: 841  KVSSLRGLEGDATPFTEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPTYY 900

Query: 1056 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            QRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGLRF
Sbjct: 901  QRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 938


>gi|45545343|gb|AAS67519.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Phragmidium sp. MB]
          Length = 931

 Score = 1180 bits (3052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/932 (61%), Positives = 718/932 (77%), Gaps = 37/932 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+M+ NHV V+ K  P+  +++ E+RS  E  ++  S+M V+M     A+  
Sbjct: 1    SEKVLIAQERMAANHVCVYAKAAPSPVSFLCEIRSAVEKGSKTISSMQVKMYGGHKAEKA 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              G  I+ TLPYIR ++PI++VFRALG + DK+IL+HICYD  D  M+E+L+P LE++F 
Sbjct: 61   GGGATIKTTLPYIRNDVPIVVVFRALGIIPDKEILDHICYDRNDIGMLEMLKPCLEDSFP 120

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ Q+VALD+IG+RG + G++R++R++YA+EILQKEMLPH+   +  + KKAY+FGY++H
Sbjct: 121  IQEQEVALDFIGRRGTSTGLSRERRLQYAEEILQKEMLPHISMSEGQQGKKAYFFGYMVH 180

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL AL RR  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+DV  ++QKCV+  K  N
Sbjct: 181  RLLLAALDRRDLDDRDHFGKKRLDLAGPLLASLFRILFRKLTKDVYRHLQKCVEMQKPFN 240

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K+ TIT+GLKYSLATGNWG Q  A   +AGVSQVLNR T+ASTLSHLRR N+PIG
Sbjct: 241  LNAAVKSNTITNGLKYSLATGNWGDQKKAMQAKAGVSQVLNRYTFASTLSHLRRCNTPIG 300

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHNS WGM+CPAETPEGQACGLVKNLALM YI+VGS + PI+EFLEEWG 
Sbjct: 301  RDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEWGM 360

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E+ +E S + +   TK+FVNG W G+HR P  L+ T++RLRR  D+  EV V+RD+R +E
Sbjct: 361  ESLDEYS-SDMASGTKVFVNGVWQGVHRSPADLLDTIKRLRRCGDIEPEVSVMRDVRERE 419

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ----------QRESPEDG----GWHDL 662
            LR++TD GR  RPLFIVE Q+LL+KK  +  L             E PED     GW  L
Sbjct: 420  LRVFTDGGRVCRPLFIVENQQLLLKKEHVEWLSNGCISASDDPNAEIPEDEGQPFGWSQL 479

Query: 663  VAKGFIEYIDTEEEETTMISMTINDLVQARLH------PEE-------------AYADTY 703
            VA+G +EY+D EEEET MI MT  +L Q+R +      P E              Y+ T+
Sbjct: 480  VARGIVEYLDAEEEETVMICMTPEELEQSREYQLTGQVPREQFDPAARLKGNVSMYSHTW 539

Query: 704  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            THCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN++ RMDT+A +LYY
Sbjct: 540  THCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFRMRMDTMANILYY 599

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS ++RS
Sbjct: 600  PQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSFYYRS 659

Query: 824  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 883
            Y D+EKK G L  E+F +P R  T+ ++ G+YDKLD+DG+  PGTRVSG+D+IIGKT  I
Sbjct: 660  YMDQEKKAGALSMEEFEKPSRETTLRLKQGTYDKLDEDGIINPGTRVSGDDIIIGKTASI 719

Query: 884  SQ-DEAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 941
             +  E  GQ  + +T+RD S+ L+ +E G++DQVL+TTN+D L+FVKVR+RS RIP+ GD
Sbjct: 720  PEGSEEMGQRDKSHTKRDVSMPLKSTENGIIDQVLITTNSDNLKFVKVRIRSTRIPETGD 779

Query: 942  KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1001
            KF+SRHGQKGTVG+ Y QEDMP+T EG+ PDII+NPHAIPSRMTIG L+EC++ KV+   
Sbjct: 780  KFASRHGQKGTVGILYRQEDMPFTSEGVCPDIIINPHAIPSRMTIGHLVECLLSKVSTIT 839

Query: 1002 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 1061
            G EGDATPF++VTV+ IS  L + GY  RG E M+NGHTGR+L A  +LGPTYYQRLKHM
Sbjct: 840  GNEGDATPFSEVTVEAISSLLKENGYHSRGLEIMFNGHTGRKLRAQCYLGPTYYQRLKHM 899

Query: 1062 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            V+DKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 900  VNDKIHSRARGPVQILTRQPVEGRSRDGGLRF 931


>gi|300122083|emb|CBK22657.2| unnamed protein product [Blastocystis hominis]
          Length = 1194

 Score = 1179 bits (3051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1177 (52%), Positives = 806/1177 (68%), Gaps = 67/1177 (5%)

Query: 58   QEIVDES-ADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGE-TATLFPK 115
            Q+I D+S   IE   E Q+     +D  +    I+   +  S+P +  +  E ++ L+P+
Sbjct: 7    QQIRDQSDRGIEAISEGQYTTIADNDEDQIKISITMDGVKASRPTVASTGAEQSSVLWPR 66

Query: 116  AARLRNLTYSAPLYVDVTKRVIK-KGHDGEE-VTETQDFTKVFIGKVPIMLRSSYCTLYQ 173
             ARLRNLTY+A +YV +T+  +  KG++ ++ V+++ D   + +  +P+MLRS  C LY 
Sbjct: 67   EARLRNLTYAASIYVGMTQTSVHIKGNESDDAVSKSMD---IRLCTIPVMLRSEACNLYG 123

Query: 174  NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM 233
              ++    +GEC YDQGGYFIINGSEK +IAQE+ +TN VYVF+K+QP+KY++ AE+RS+
Sbjct: 124  LDDERRASIGECIYDQGGYFIINGSEKAIIAQERQTTNKVYVFEKKQPSKYSWTAEIRSV 183

Query: 234  AESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILE 293
             E  + P  T+ + M + +S     +   I A LP +  EIP+ I+FRALG   D+ I++
Sbjct: 184  PEGSSVPAQTLMLCMYAHSSKSQIKNKYCIWAKLPTLSDEIPVCILFRALGCENDRSIIQ 243

Query: 294  HICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATV-----GVTRDKRIKYAKE 348
            HICY+F D +MME  RPSL EA   + ++VAL++I  R   +        R +R+K+A  
Sbjct: 244  HICYNFDDVEMMERFRPSLVEASECRTREVALNFIATRHPKMIDENGTRPRSERVKFASR 303

Query: 349  ILQKEMLPHVGT--GDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 406
            +LQK MLPH+    G     KKA+Y GY++H+LL C+L R  ++DRDH  NKR+DLAGP+
Sbjct: 304  LLQKIMLPHINVDFGPNSNCKKAFYLGYMVHKLLNCSLNRNEQEDRDHISNKRMDLAGPM 363

Query: 407  LGGLFRMLFRKLTRDVRAYVQKCVDNGKD---VNLQFAIKAKTITSGLKYSLATGNWG-Q 462
            +G LF  L  + T+++R++++K V++ K    +N+    K+  I+ GLKYS ATGNWG +
Sbjct: 364  IGRLFHGLLYRFTKELRSHMKKVVNSRKGSSFINIMTNAKSSIISDGLKYSFATGNWGDR 423

Query: 463  ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE 522
            +    T  GVSQ LNRLTYAS+LS LRRL SPI    K+ KPR LH++QWGMMCPAETPE
Sbjct: 424  SRGMPTTTGVSQSLNRLTYASSLSSLRRLKSPIDTTSKVTKPRLLHSTQWGMMCPAETPE 483

Query: 523  GQACGLVKNLALMVYITVGSAA----------YPILEFLEEWGTENFEEISPAVIPQATK 572
            GQ+CG+VKNLALM YI+VG+              I   LE  G E  E I+ ++IP+ TK
Sbjct: 484  GQSCGIVKNLALMCYISVGNPVGAAGARDWQVEKIYRLLENNGVEELETIASSLIPKTTK 543

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            +FVNG WVGIHRDP+++      L  R D +T+V +V DI+ +ELRI  D GRC RPL++
Sbjct: 544  VFVNGVWVGIHRDPKVI------LDHREDFDTDVSMVYDIQERELRITADAGRCCRPLYV 597

Query: 633  VE--KQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 690
            V+   QR+ I+K  +  LQ    PE   + DLV    IEY+  EEEE  MI M   DL  
Sbjct: 598  VDPITQRVKIRKYHLRNLQ----PETM-FSDLVLNRLIEYVSAEEEEYCMIGM---DLKT 649

Query: 691  ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 750
             R   E     TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+YV+NY
Sbjct: 650  MRACVENRSCTTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYVSNY 709

Query: 751  QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 810
            + RMDT A+VL YPQ+PLVTT+AM +L F++LPAG N +VAI CYSGYNQEDS+I+NQS+
Sbjct: 710  RQRMDTTAHVLSYPQQPLVTTKAMTYLRFKELPAGCNCVVAICCYSGYNQEDSLILNQSA 769

Query: 811  IDRGFFRSLFFRSYRDEEKKMGT-----------LVKEDFGRP-DRSNTMGMRHGSYDKL 858
            I+RG FRS+F+R+Y+D E +  T           +  E F RP     +M    G Y  L
Sbjct: 770  IERGLFRSIFYRTYQDTEVRRDTTTSSLSLSNPSMGNERFCRPLSEQCSMTKDEGLYRNL 829

Query: 859  DDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLT 918
            D+DGL  PG+RV+G+ ++IGK TP  +    G   R   +D+S  LRH+E+G+VD+V+LT
Sbjct: 830  DEDGLVKPGSRVTGDSILIGKATPTGELNVHG---RSNLKDNSTGLRHAESGIVDEVMLT 886

Query: 919  TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 978
            TN  G RFVKV+VRSVR+PQIGDK SSRHGQKGT+GMTY QEDMP+T  GI PDII+NPH
Sbjct: 887  TNEKGFRFVKVKVRSVRVPQIGDKLSSRHGQKGTIGMTYRQEDMPFTENGIVPDIIMNPH 946

Query: 979  AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1038
            AIPSRMTIGQLIEC++GKVAA   +EGD T F+DVTV++IS  LH  GYQ RG+E +YNG
Sbjct: 947  AIPSRMTIGQLIECLLGKVAALQAREGDGTAFSDVTVEDISNKLHNEGYQKRGYEVLYNG 1006

Query: 1039 HTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG----PVQIL--TRQPAEGRSRDGGLR 1092
            HTGRR+ A +F+GPT+YQRLKH+VDDKIH+R RG    P +IL  TRQP EGRSRDGGLR
Sbjct: 1007 HTGRRMEARVFMGPTFYQRLKHLVDDKIHARARGMNTKPGRILHPTRQPLEGRSRDGGLR 1066

Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152
             GEMERD +IA+GAS  ++ER F  SDAY V +C+ CGL  I  +  N++ C+ C NKT 
Sbjct: 1067 MGEMERDVLIAYGASQLVRERFFYSSDAYVVTICDDCGL--ICTMIDNTYICKNCDNKTR 1124

Query: 1153 IVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKD 1189
              +V IPYACKLLFQELM+M IAPR+ T       KD
Sbjct: 1125 FSKVEIPYACKLLFQELMSMNIAPRIHTGGIMGDGKD 1161


>gi|45330861|gb|AAS57791.1| RNA polymerase II second largest subunit [Cortinarius iodes]
          Length = 878

 Score = 1179 bits (3050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/881 (64%), Positives = 694/881 (78%), Gaps = 27/881 (3%)

Query: 210  TNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPY 269
            TNHVYVF K QP+   ++AE+RS  E   +  S   V+M  R   +  S G  ++AT+PY
Sbjct: 1    TNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMKATIPY 58

Query: 270  IRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIG 329
            I+ +IPI +VFRALG ++D+DILEHICYD QD+QM+E+L+P +++ FVIQ+++VALD+IG
Sbjct: 59   IKVDIPIWVVFRALGVISDRDILEHICYDLQDSQMLEMLKPCIDDGFVIQDREVALDFIG 118

Query: 330  KRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAE 389
             RG T G++R++RI+YA+EILQKEMLPHV   +  E +KA++FGY+IHRLLL AL RR  
Sbjct: 119  NRGTTTGLSRERRIRYAQEILQKEMLPHVAMKEGSEYQKAHFFGYMIHRLLLAALERREL 178

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+
Sbjct: 179  DDRDHFGKKRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITN 238

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 239  GLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 298

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WGM+CPAETPEGQACGLVKNLALM  I+VGS A P +EFLEEWG E+ EE S +  P
Sbjct: 299  NTHWGMVCPAETPEGQACGLVKNLALMACISVGSIAAPGIEFLEEWGLESLEEHSHSPAP 358

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             +TKIFVNG W+G+HRDP  LVKTL++LRR+ D++ E+ +VRDIR KELR+Y+D GR  R
Sbjct: 359  -STKIFVNGVWIGVHRDPANLVKTLKKLRRKDDISPEISIVRDIREKELRVYSDAGRVCR 417

Query: 629  PLFIVEKQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIN 686
            PLFIVE QRL+++KR +  L     +  E+  W  L+  G IE +D EEEET MISMT  
Sbjct: 418  PLFIVENQRLILQKRHVRWLNNGINDEGEEFKWDRLIKGGIIELLDAEEEETVMISMTPE 477

Query: 687  DLVQARLH-----PEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHN 727
            DL  +RL      P+                +A T THCEIHPS+ILG+CASIIPFPDHN
Sbjct: 478  DLENSRLQRPGVDPQANEGEFDPAARLKAGTHAHTLTHCEIHPSMILGICASIIPFPDHN 537

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG N
Sbjct: 538  QSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQN 597

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT
Sbjct: 598  AIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRENT 657

Query: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLR 905
            + ++HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+
Sbjct: 658  LRLKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLK 717

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
             +E+G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGTVG+TY QEDMP+T
Sbjct: 718  STESGIVDQVLITTNSEGQKFVKVRVRSSRIPQIGDKFASRHGQKGTVGITYRQEDMPFT 777

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
             EGI PD+I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + 
Sbjct: 778  AEGIVPDVIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSIFLRQK 837

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKI
Sbjct: 838  GYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKI 878


>gi|45545347|gb|AAS67521.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Sphaerophorus globosus]
          Length = 903

 Score = 1173 bits (3034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/904 (62%), Positives = 700/904 (77%), Gaps = 42/904 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK Q N   YVAE+RS  E  +R  S M +++  +     G
Sbjct: 1    SEKVLIAQERSAANIVQVFKKAQSNT-PYVAEIRSAVERGSRLISGMQIKLYEKGEGSKG 59

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              GQ I+ TLPYI+TEIPI IVFRALG V+D+DIL HICYD +DTQM+E+L+P +EEAFV
Sbjct: 60   GFGQTIKCTLPYIKTEIPIAIVFRALGIVSDEDILNHICYDRKDTQMLEMLKPCIEEAFV 119

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++VALD+IGKRG + GVTRDKRIKYA++I+QKE+LPH+   +  ET+KA++ GY++H
Sbjct: 120  IQDREVALDFIGKRGNSQGVTRDKRIKYARDIMQKELLPHISQSEGTETRKAFFLGYMVH 179

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLL CALGRR  DDRDH+G KRLDLAGPLL GLFRMLF KLT+DV  Y+Q+CV+N K+ N
Sbjct: 180  RLLQCALGRREVDDRDHFGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQRCVENNKEFN 239

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K+ T+T+GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIG
Sbjct: 240  LTLAVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIG 299

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ + G 
Sbjct: 300  RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMVQRGM 359

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            +  EE  P   P ATKIFVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E
Sbjct: 360  DLLEEYEPLNSPNATKIFVNGVWVGVHRDPAHLVSTVQNLRRRGHLSHEVSLVRDIRDRE 419

Query: 617  LRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQ---------RESPEDG--G 658
             +I+TD GR  RPLF+++          L++ K  I  L++          +  ED   G
Sbjct: 420  FKIFTDAGRVCRPLFVIDNDPKSNNCGNLVLTKDHIAKLEEDKEMGMSMDAQEREDKLMG 479

Query: 659  WHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQA-RLHPEEAYAD----------- 701
            W  LV  G +EY+D EEEET MI MT  DL     +QA    PE+   D           
Sbjct: 480  WTGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQIQAGYTMPEQNPDDLNKRVKAPLNQ 539

Query: 702  ---TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
               T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A
Sbjct: 540  TSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMA 599

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
             +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRS
Sbjct: 600  NILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 659

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LF+RSY D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIG
Sbjct: 660  LFYRSYTDQEKRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 719

Query: 879  KTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 936
            KT PIS D E  GQ ++ +T+RD S  LR +E G+VDQVLL+TN+DGLRFVKVR+R+ +I
Sbjct: 720  KTAPISPDAEELGQRTKQHTKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKI 779

Query: 937  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 996
            PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + K
Sbjct: 780  PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 839

Query: 997  VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            V++  G EGDATPFT+VTVD++S+ L + GYQ RGFE MYNGHTG++L A +FLGPTYYQ
Sbjct: 840  VSSLRGFEGDATPFTEVTVDSVSRLLREHGYQSRGFEIMYNGHTGQKLRAQVFLGPTYYQ 899

Query: 1057 RLKH 1060
            RL+H
Sbjct: 900  RLRH 903


>gi|300394768|gb|ADK11922.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
            mollusca]
          Length = 875

 Score = 1172 bits (3033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/878 (63%), Positives = 687/878 (78%), Gaps = 28/878 (3%)

Query: 210  TNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPY 269
            TNHVYVF K QP+   ++AE+RS  E   +  S   V+M  R   +  S G  ++AT+PY
Sbjct: 1    TNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQER--SLGNVMKATIPY 58

Query: 270  IRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIG 329
            IR +IPI +VFRALG ++D+DILEHICYD QD QM+E+L+P +++ FVIQ+++VALD+IG
Sbjct: 59   IRVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIG 118

Query: 330  KRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAE 389
             RG T G++R++RI+YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR  
Sbjct: 119  NRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERREL 178

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+
Sbjct: 179  DDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITN 238

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 239  GLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 298

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P
Sbjct: 299  NTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP 358

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
              TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  R
Sbjct: 359  -CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCR 417

Query: 629  PLFIVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTI 685
            PLFIVE Q+L ++K+ +  L Q    +DG    W  LV  G IE +D EEEET MISMT 
Sbjct: 418  PLFIVENQQLALQKKHVKWLNQGFRDDDGEEYKWEQLVKGGIIELLDAEEEETVMISMTP 477

Query: 686  NDLVQARL-------HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDH 726
             DL  +R+       H  +A             A T+THCEIHPS+ILGVCASIIPFPDH
Sbjct: 478  EDLENSRMQSAGIDPHSNDADYDPAARLKAGINAHTWTHCEIHPSMILGVCASIIPFPDH 537

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG 
Sbjct: 538  NQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ 597

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  
Sbjct: 598  NAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDT 657

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISL 904
            T+ M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L
Sbjct: 658  TLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPL 717

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            + +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+
Sbjct: 718  KSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPF 777

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1024
            T EGI PD I+NPHAIP RMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L +
Sbjct: 778  TAEGIVPDXIINPHAIPXRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQ 837

Query: 1025 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 838  KGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 875


>gi|55273993|gb|AAV48867.1| RNA polymerase II second largest subunit [Armillaria mellea]
          Length = 884

 Score = 1172 bits (3031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/888 (63%), Positives = 692/888 (77%), Gaps = 29/888 (3%)

Query: 205  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 264
            QE+M+TNHVYVF K QP    ++AE+RS+ +   +  S   V+M  R   +  S G  ++
Sbjct: 1    QERMATNHVYVFAKAQPAPINFLAEIRSLVKKGGKTISQFQVKMFHRHQER--SLGNVMK 58

Query: 265  ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVA 324
            AT+PYI+ +IPI +VFRALG ++D+DILEHICYD QD QM+E+L+P +++ FVIQ+++VA
Sbjct: 59   ATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVA 118

Query: 325  LDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCAL 384
            LD+IG RG T G++R++RI+YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL
Sbjct: 119  LDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYMIHRLLLAAL 178

Query: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
             RR  DDRDH G  RLDLAGPLL  LFRMLFRK  RDV  Y+QKCV+  K+ N+   +K 
Sbjct: 179  ERRELDDRDHLGKNRLDLAGPLLANLFRMLFRKFNRDVYRYLQKCVETHKEFNVSVGVKH 238

Query: 445  KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
            +TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AK
Sbjct: 239  QTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAK 298

Query: 504  PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
            PRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E  EE +
Sbjct: 299  PRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLETLEENA 358

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
             +  P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD 
Sbjct: 359  HSATP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDA 417

Query: 624  GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTM 680
            GR  RPLFIVE Q+L+++K+ I  L  R + +DG    W  L+  G IE +D EEEET M
Sbjct: 418  GRVCRPLFIVENQQLVLQKKHIKWLV-RGTNDDGEEYKWEQLIKGGVIELLDAEEEETVM 476

Query: 681  ISMTINDLVQARL-------HPEEA------------YADTYTHCEIHPSLILGVCASII 721
            ISMT  DL  +RL       H  +              A T+THCEIHPS+ILG+CASII
Sbjct: 477  ISMTPEDLENSRLQQSGVDIHANDGDFDPAARLKAGINAHTWTHCEIHPSMILGICASII 536

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+
Sbjct: 537  PFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRE 596

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EK  G    E F +
Sbjct: 597  LPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDVEKNNGIHSMEVFEK 656

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQASR-YTRRD 899
            P R +T+ M+HG+YDKL+DDGL  PGT V GED+IIGKT PI  + E  GQ +R +TRRD
Sbjct: 657  PMRESTLRMKHGTYDKLEDDGLIAPGTGVVGEDIIIGKTAPIPPESEELGQRTRMHTRRD 716

Query: 900  HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 959
             S  L+++E G+VDQVL+TTN +G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY Q
Sbjct: 717  VSTPLKNTERGIVDQVLVTTNYEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQ 776

Query: 960  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 1019
            EDMP+T EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S
Sbjct: 777  EDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVS 836

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
              L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIH
Sbjct: 837  TFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIH 884


>gi|330040234|ref|XP_003239811.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
            paramecium]
 gi|327206736|gb|AEA38913.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
            paramecium]
          Length = 1209

 Score = 1171 bits (3030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/1213 (48%), Positives = 798/1213 (65%), Gaps = 72/1213 (5%)

Query: 27   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAET 86
            D W ++S+YFEE  +++QQL+SF++F+QN MQ+IVD+   I +  +       + +F + 
Sbjct: 11   DTWPLVSSYFEENSIIKQQLESFNDFVQNKMQDIVDDLPPIVVSYKVDKLTDFKENFLQN 70

Query: 87   IYKI-SFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE- 144
            + KI   GQ++LSKP   E DG   TL P  ARLR+L+YS+PLY D++   +   ++ E 
Sbjct: 71   MKKILRLGQLHLSKPTFIEEDGVIHTLLPNEARLRSLSYSSPLYCDISVTTVNVTNEHEK 130

Query: 145  --EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
              E+   Q+  K+ +G++PIM++S +C L +     L  LGEC  D GGYFIINGSEKV+
Sbjct: 131  ERELNFKQEKQKILLGRIPIMIKSRFCILDKLLPMTLQNLGECNLDLGGYFIINGSEKVI 190

Query: 203  IAQEKMSTNHVYVFKKRQPN-----------KYAYVAEVRSMAESQNRPPSTMFVRML-- 249
            +AQEKM+ N+VYVF+K++ N           K  + AE RS++E     PS   +++   
Sbjct: 191  VAQEKMAWNYVYVFEKKKENNSVDKSFFLDLKNLFFAECRSISEFGKWSPSLTIIKICLN 250

Query: 250  ---------SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ 300
                        S    +   YIR  LPY ++++P+  +F+ALGF  + +I+ +ICYD  
Sbjct: 251  KFRKKKIAKKENSFSHFTGKFYIRVVLPYFKSDVPVTWIFKALGFEDETEIIPYICYDNT 310

Query: 301  DTQMMELLRPSL-EEAFVIQN---------QQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
            +  ++EL+R  L ++ FV  N         Q+ +L  IG+       +   RI+YA EIL
Sbjct: 311  NENLIELVRNILKDDHFVPDNLKNDCFRLDQETSLALIGQH--IFKASHGTRIRYAYEIL 368

Query: 351  QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
            Q+E LPHVG G   E +K ++FGY++++LLL  LG +  DDRDHYG KRLD   PLL  L
Sbjct: 369  QREFLPHVGIGQGFELRKGFFFGYMVNKLLLVQLGNKKVDDRDHYGYKRLDTVSPLLSVL 428

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDV-NLQFAIKAKTITSGLKYSLATGNWGQANAAGTR 469
            FR L  K T+D+R  ++K  +  K+   +    K   IT+G+ YSLATGNW   N    +
Sbjct: 429  FRQLVNKATKDLRMSLEKKTNLEKNTFQISDIFKFNLITTGMFYSLATGNWS-TNGQTMK 487

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
             GVSQVLNR+ Y STLSHLR++NS      KL KPRQLHN+ WG++CP ETPEG +CGLV
Sbjct: 488  TGVSQVLNRINYMSTLSHLRKINSTGINVSKLTKPRQLHNTYWGLICPVETPEGHSCGLV 547

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNLA+  YIT+GS++ P+ EFLEE   +NF EI    I    KIF+N CW+G++  P+ +
Sbjct: 548  KNLAISAYITLGSSSMPVFEFLEELKIKNFNEIKVQNIRFYYKIFLNDCWIGVYDKPDTI 607

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDI---I 646
             KTLR  RR  + N E+ V+   + KE++IYTD GR  RPL + E  +   K + I   I
Sbjct: 608  AKTLRCFRRSGNTNQELSVIIFHKDKEIKIYTDAGRVCRPLIVSELVKFNKKNQYIVKSI 667

Query: 647  ALQQRESP-----EDGGWHDLVAKGFIEYIDTEEEETTMISM-------TINDLVQARLH 694
            ++ Q             + +L+  G IE+ID EEE+T +I M        IN+L+     
Sbjct: 668  SVNQYNFDVLTIGNKCTFTELIRNGLIEFIDAEEEKTCVIGMYVFEGIKNINNLI----- 722

Query: 695  PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
                   T+TH EIHPS+I+G+CAS IPF  HNQSPRNTYQ+AMGKQ++GIY  N+Q RM
Sbjct: 723  -------TFTHFEIHPSMIMGICASFIPFSHHNQSPRNTYQAAMGKQSIGIYSLNFQHRM 775

Query: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
            DT+A++LYYPQKPLVTTR + +   +  P GINAIVA ACY+GYNQEDS+IM+Q SIDRG
Sbjct: 776  DTMAHILYYPQKPLVTTRFLNYSASKNFPNGINAIVATACYTGYNQEDSIIMSQDSIDRG 835

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
             FRS+F+R YRDEEKK     KE F  P++S  +G++ GSY+KLD DG    G+R+SGED
Sbjct: 836  LFRSVFYRCYRDEEKKKTNGFKETFEIPNKSECIGLKIGSYEKLDLDGFVQEGSRISGED 895

Query: 875  VIIGKTTPISQDEAQGQ-----ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 929
            VIIGKT P +   +Q +      +   ++D SI  R+ E G+VD++++ T+  G R VK+
Sbjct: 896  VIIGKTVPFTNGISQKKILKFKKNPKYKKDASILARNCEVGVVDKIMIGTSEYGNRLVKI 955

Query: 930  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 989
            R+RS+RIPQ+GDKF+SRHGQKG +GM Y Q D+P+T EG++PDII+NPHAIPSRMTIG +
Sbjct: 956  RIRSIRIPQVGDKFASRHGQKGILGMAYKQYDLPFTTEGMSPDIIMNPHAIPSRMTIGHV 1015

Query: 990  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 1049
             EC++ K++A  G EGD TPF+ ++++ I K L   GY   G+E M NG TG+ L  +IF
Sbjct: 1016 YECLLAKISAISGIEGDGTPFSSISIEKIMKHLKNYGYDKSGWEAMINGFTGKFLKNLIF 1075

Query: 1050 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 1109
            +GPTYYQ+LKHMVDDKIHSR RGPVQILTRQP EGRSR GGLRFGEMERDC+++HG+  F
Sbjct: 1076 IGPTYYQKLKHMVDDKIHSRSRGPVQILTRQPVEGRSRYGGLRFGEMERDCILSHGSIVF 1135

Query: 1110 LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 1169
            LK+RL DQSD + + VC+ CGLIAI N K   FECR C NK  I  + IPYACKLL QEL
Sbjct: 1136 LKDRLLDQSDPFVIFVCDLCGLIAIGNRKLKIFECRSCDNKMFISLIKIPYACKLLLQEL 1195

Query: 1170 MAMAIAPRMLTKE 1182
            +A++I PRM+  E
Sbjct: 1196 IALSIGPRMIPGE 1208


>gi|45545321|gb|AAS67508.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Cryphonectria parasitica]
          Length = 941

 Score = 1170 bits (3028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/944 (60%), Positives = 705/944 (74%), Gaps = 51/944 (5%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK QP+   Y AE+RS  E  +R  S+  +++ ++     G
Sbjct: 1    SEKVLIAQERSAANIVQVFKKAQPSPDLYQAEIRSALEKGSRLISSTTLKLKAKGETARG 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              GQ I+ATLPY++ EIPI IVFRALG ++D+DIL  +CYD QDTQMME+LRP +EEAF 
Sbjct: 61   GFGQTIQATLPYVKKEIPIAIVFRALGVISDEDILNAVCYDRQDTQMMEMLRPCIEEAFA 120

Query: 318  IQNQQVALDYIGKRGATV-GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            IQ ++VALDYI KR  +    ++ +R+K AKEILQKE+LPH+   + CET+KAY+ GY+ 
Sbjct: 121  IQEREVALDYIAKRSNSGHSASKIQRMKNAKEILQKELLPHIAQTEGCETRKAYFLGYMT 180

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR + +KLT D+ AY+++CV  GK  
Sbjct: 181  HKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRNIVKKLTGDMMAYMKRCVSEGKHF 240

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            +L   I+  T+T+GLKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PI
Sbjct: 241  DLALGIRHSTLTNGLKYSLATGNWGEQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 300

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS A PI +F+ +  
Sbjct: 301  GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPIKDFMVQRN 360

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             E  EE  P   P ATKIF+NG WVG+H  P  LV  ++ LRRR  ++ EV +VRDIR +
Sbjct: 361  MEVLEEYEPGASPDATKIFINGTWVGVHSQPAHLVTLVQELRRRCIISHEVSLVRDIRDR 420

Query: 616  ELRIYTDYGRCSRPLFIVE---------KQRLLIKK------RDIIALQQRESPED-GGW 659
            E +I++D GR  RPLF+V          ++ L + K      R +    +++  ED  GW
Sbjct: 421  EFKIFSDAGRVMRPLFVVNTPDNENRSRRRDLALTKEHAGVLRMMPKYSRKKDDEDYFGW 480

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDL----------------------------VQA 691
              L   G IEY+D EEEET MI MT  DL                            V+ 
Sbjct: 481  DGLQNSGVIEYLDAEEEETAMICMTPEDLEDFRQRKLRGKDGKDEEPEDEGRSLNARVKT 540

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            R++P+      YTHCEIHP+++LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY 
Sbjct: 541  RINPD---IHMYTHCEIHPAMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYS 597

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 598  RRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSI 657

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRG FRSLFFRSY D EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVS
Sbjct: 658  DRGLFRSLFFRSYTDSEKRVGINVVESFEKPFRSDTLRLKHGTYDKLDDDGIIAPGVRVS 717

Query: 872  GEDVIIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 929
            GED+IIGKT+PI+ D  + GQ + ++ +RD S  LR +E+G++D V++TTN DGLR+VKV
Sbjct: 718  GEDIIIGKTSPINADNQELGQRTEQHVKRDASTPLRSTESGIIDSVIVTTNQDGLRYVKV 777

Query: 930  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 989
            RVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI  L
Sbjct: 778  RVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMTIAHL 837

Query: 990  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 1049
            IEC+M K+A   G EGDATPFT+VTVD+IS+ L + GYQ RGFE MYNGHTGR+L A +F
Sbjct: 838  IECLMSKLATLKGMEGDATPFTEVTVDSISELLRQHGYQSRGFEVMYNGHTGRKLRAQVF 897

Query: 1050 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
             GPTYYQRL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRF
Sbjct: 898  FGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRF 941


>gi|46277275|gb|AAS86828.1| RNA polymerase II second largest subunit, partial [Acer circinatum]
          Length = 580

 Score = 1169 bits (3025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/580 (97%), Positives = 573/580 (98%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ+T
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQST 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNGCWVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF
Sbjct: 61   KIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVEKQRLLIKKRDI ALQQRES E GGWH+LV+KGFIEYIDTEEEETTMISMTINDLVQA
Sbjct: 121  IVEKQRLLIKKRDIHALQQRESTEVGGWHELVSKGFIEYIDTEEEETTMISMTINDLVQA 180

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            RL+PE+AY+  YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 181  RLNPEDAYSGCYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 240

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
            FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 241  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 300

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NTMGMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 301  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRCNTMGMRHGSYDKLDDDGLAPPGTRVS 360

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKTTPI+QDEAQGQ+SRYTRRDHSISLRHSETG+VDQVLLTTNADGLRFVKVRV
Sbjct: 361  GEDVIIGKTTPIAQDEAQGQSSRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRV 420

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 421  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 480

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL AMIFLG
Sbjct: 481  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLG 540

Query: 1052 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
            PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL
Sbjct: 541  PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 580


>gi|46277289|gb|AAS86835.1| RNA polymerase II second largest subunit, partial [Camellia japonica]
          Length = 591

 Score = 1168 bits (3022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/591 (91%), Positives = 577/591 (97%)

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            KLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENF
Sbjct: 1    KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENF 60

Query: 560  EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 619
            EEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+
Sbjct: 61   EEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRL 120

Query: 620  YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 679
            YTDYGRCSRPLFIV+KQRLLIKK+DI+ LQQRESPE+ GWHDLVAKGFIEY+DTEEEETT
Sbjct: 121  YTDYGRCSRPLFIVDKQRLLIKKKDILILQQRESPEESGWHDLVAKGFIEYVDTEEEETT 180

Query: 680  MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
            MISMTINDLV +R++P+EAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 181  MISMTINDLVTSRVNPDEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 240

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA VAIACYSGYN
Sbjct: 241  KQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINATVAIACYSGYN 300

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDS+IMNQSSIDRGFFRSLFFRSYRDEEKKMGTL+KEDFG P+R NTMGMRHGSYDKLD
Sbjct: 301  QEDSLIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLIKEDFGCPNRDNTMGMRHGSYDKLD 360

Query: 860  DDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTT 919
            DDGLAPPGTRVSGEDVIIGKTTP+  +E QG +SRYTRRDHS +LRHSE+GMVDQVLLTT
Sbjct: 361  DDGLAPPGTRVSGEDVIIGKTTPMVPEETQGPSSRYTRRDHSTALRHSESGMVDQVLLTT 420

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
            NADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW++EGITPDIIVNPHA
Sbjct: 421  NADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWSIEGITPDIIVNPHA 480

Query: 980  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
            IPSRMT+GQLIECIMGKVAAH+GK+GDATPFTDVT+DNISKALHKCGYQMRGFETMYNGH
Sbjct: 481  IPSRMTVGQLIECIMGKVAAHVGKKGDATPFTDVTLDNISKALHKCGYQMRGFETMYNGH 540

Query: 1040 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
            TGR+LT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG
Sbjct: 541  TGRQLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 591


>gi|120561259|gb|ABM27014.1| RNA polymerase II second largest subunit, partial [Allomyces
            macrogynus]
          Length = 867

 Score = 1167 bits (3020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/879 (62%), Positives = 685/879 (77%), Gaps = 31/879 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKV+IAQE+ +TN V+VF K  P+   + AE+RS AE   +  S+  V+M         
Sbjct: 1    SEKVIIAQERTATNTVFVFSKPPPSAVLFQAEIRSQAEDGPKTLSSFIVKM--------- 51

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            S  Q I A+LPYI+ +IPI+++FRALG VAD+DILE ICYDF D QM+E+L+PS++ AF 
Sbjct: 52   SRDQNITASLPYIQQDIPIMVLFRALGLVADRDILERICYDFSDDQMLEMLKPSIDNAFT 111

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ +++ALD+IGKRG  +G+TRDKRI+YA ++L++E+LPH+G    C+T+K+Y+ GY++H
Sbjct: 112  IQEREIALDFIGKRGRNIGLTRDKRIRYAHDLLERELLPHIGITPGCQTRKSYFIGYMVH 171

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL ALGRR  DDRDH+G KRLDLAGPLL  LFR  F+KLT+DV  Y   C++ G++ N
Sbjct: 172  RLLLAALGRRQVDDRDHFGKKRLDLAGPLLASLFRTFFQKLTKDVSRYFTVCIERGREFN 231

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  AI + TIT+GL+Y+LATGNWG Q     TRAGVSQVLNR T+ASTLSHLRRLN+PIG
Sbjct: 232  LNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTPIG 291

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            REGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM YI+VGSA+ PILEFLEEW T
Sbjct: 292  REGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASGPILEFLEEWTT 351

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            EN EEI+ + I   TK+FVNG WVGIHR P+ LV+TL  LRR  D+  EV VVRD+R  E
Sbjct: 352  ENLEEITASAIGSNTKVFVNGSWVGIHRQPDSLVQTLISLRRSGDIMPEVSVVRDVRDNE 411

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEE 676
            LRIYTD GR  RPLFIV +Q+ L+ +RD +A   R    + GW DL+A G +EY+DTEEE
Sbjct: 412  LRIYTDAGRICRPLFIVNEQQQLVLRRDHVA---RLEVGEWGWEDLLANGIVEYLDTEEE 468

Query: 677  ETTMISMTINDLVQARLHP--EEAYADT---------------YTHCEIHPSLILGVCAS 719
            ETTMI MT +DL ++R  P  +++  D                ++HCEIHPS+ILG+CAS
Sbjct: 469  ETTMICMTPDDLAESRGDPIPDKSKLDKTARLKSRKAGDVCKQWSHCEIHPSMILGICAS 528

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q RMDTLA +LYYPQKPLV TR+M++L F
Sbjct: 529  IIPFPDHNQSPRNTYQSAMGKQAMGLYLTNFQLRMDTLANILYYPQKPLVATRSMKYLRF 588

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAG NA+VAIA YSGYNQEDS+IMNQSSIDRG FRS+++R+Y D+EKK G    E F
Sbjct: 589  RELPAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGLFRSIYYRAYMDQEKKSGFSDVETF 648

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRYTRR 898
             +P R  T+ +RHGSYDK+++DGL  PGTRV+G+D+IIGKT P+  D ++ G  +  T++
Sbjct: 649  EKPTRETTLKLRHGSYDKIEEDGLVAPGTRVTGDDIIIGKTAPLPPDTSEMGARTTQTKK 708

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S SL+ +E G+VD V+LTTN DG +FVKVRVRS R+PQ+GDKF+SRHGQKGTVGMTY 
Sbjct: 709  DVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTRVPQMGDKFASRHGQKGTVGMTYR 768

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
            QEDMP++ +G+TPD+IVNPHAIPSRMTIG L+EC++ KV +  G EGDATPFTD+TV  I
Sbjct: 769  QEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLLSKVGSLTGTEGDATPFTDITVQEI 828

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            +  L  CGYQ RGFE MYNGHTG++L A +F GPTYYQR
Sbjct: 829  ADRLRSCGYQQRGFEIMYNGHTGKKLAAQVFFGPTYYQR 867


>gi|120561243|gb|ABM27006.1| RNA polymerase II second largest subunit, partial [Zancudomyces
            culisetae]
 gi|363543580|gb|AEW26268.1| RPB2 [Zancudomyces culisetae]
          Length = 899

 Score = 1167 bits (3019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/898 (62%), Positives = 696/898 (77%), Gaps = 25/898 (2%)

Query: 217  KKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPI 276
            KK+ PN + Y AE+RS  E  +R  ST+   ML +    GG  G+ I+AT+PYIR+E+P+
Sbjct: 6    KKKIPNLH-YTAEIRSAMEGASRQASTL---MLKKFGRSGGGGGKGIQATIPYIRSEVPV 61

Query: 277  IIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVG 336
            ++VFRALG VA KDILEHICYD  D++M+E  + S+EEAFVIQ+++V+LD+IGKRG TVG
Sbjct: 62   VVVFRALGTVAAKDILEHICYDSNDSEMVEEFKASIEEAFVIQDREVSLDFIGKRGTTVG 121

Query: 337  VTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYG 396
            V R+KRIKYA+EILQKE LPHVGT    ET+K Y+ GY++HRLL C L RR +DDRDHYG
Sbjct: 122  VNREKRIKYAREILQKEFLPHVGTQPHNETRKTYFLGYMVHRLLQCVLERRDQDDRDHYG 181

Query: 397  NKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLA 456
             KRLDLAGPLL  LFR LF+K+TRD+  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLA
Sbjct: 182  RKRLDLAGPLLAMLFRNLFKKMTRDMTRYLQKCIESRREFNLSMALKSNTITAGLKYSLA 241

Query: 457  TGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMM 515
            TGNWG Q  A  +R GV+QVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++
Sbjct: 242  TGNWGDQKKAMQSRTGVAQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLV 301

Query: 516  CPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFV 575
            CPAETPEGQACGLVKNLALM +ITVGS +  IL FLEEW  EN EE+    +  +TKIFV
Sbjct: 302  CPAETPEGQACGLVKNLALMAHITVGSDSGSILMFLEEWAMENLEELVGDSLADSTKIFV 361

Query: 576  NGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK 635
            NG WVGIH++   L  TL++LRRR++ + E+ +V D+R +E+RI TD GR  RPLF+V  
Sbjct: 362  NGVWVGIHKEAVRLAATLKQLRRRLEFSYELSIVHDVREREIRILTDAGRVCRPLFVVNH 421

Query: 636  QRLLIKKRDIIALQQRESPEDGG--WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 692
             RL + K  + A++ R   E     WHDL+++G +EY+D EEEET MI M+ ++L ++R 
Sbjct: 422  MRLALTKPVVAAIEARRLGERDAVRWHDLLSEGIVEYLDAEEEETAMIVMSPHELDESRR 481

Query: 693  ------LHPEE---------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
                  L P++             T+THCEIHPS+ILG+CASI+PFPDHNQSPRNTYQSA
Sbjct: 482  FVHTGQLPPKDDGRIRSRRNIGITTWTHCEIHPSMILGICASIVPFPDHNQSPRNTYQSA 541

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMGI +TNYQ RMDTLA +LYYPQKPL TT AME++ F +LPAG NAIVAI CY+G
Sbjct: 542  MGKQAMGILLTNYQVRMDTLANLLYYPQKPLATTHAMEYIKFSELPAGQNAIVAILCYTG 601

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDS+IMNQSSIDRG FRS+FFRSY DEE K+G      F +P R++T+ ++ G+Y+K
Sbjct: 602  YNQEDSLIMNQSSIDRGLFRSIFFRSYMDEEDKLGMRTMGRFEKPSRASTLRLKIGTYEK 661

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            LDDDGL  PGTRV+G+D+IIGKTTPI  +  E   +   +T+ D S  LR +E+G+VDQV
Sbjct: 662  LDDDGLIAPGTRVTGDDIIIGKTTPIPIASLELGQRTLAHTKLDASKPLRATESGIVDQV 721

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            LLTTN DG +FVKVRVRS R+PQIGDKF+SRHGQKGT+G+ YT EDMP+T +GI PD+I+
Sbjct: 722  LLTTNGDGFKFVKVRVRSTRVPQIGDKFASRHGQKGTIGIVYTSEDMPFTADGIVPDLII 781

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035
            NPHAIPSRMTIG LIEC++ K+A  +G   DA+PFTDVTVD IS  L   GY  RG E M
Sbjct: 782  NPHAIPSRMTIGHLIECLLSKLATLVGTAADASPFTDVTVDAISAELFSLGYHSRGLEVM 841

Query: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            YNGH+GR+L + +F GPTYYQRLKHMVDDKIHSR RGP+QILTRQP EGRSRDGGLRF
Sbjct: 842  YNGHSGRKLYSQVFFGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 899


>gi|45545353|gb|AAS67524.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Usnea cornuta]
          Length = 903

 Score = 1165 bits (3014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/904 (62%), Positives = 699/904 (77%), Gaps = 42/904 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK Q N   YVAE+RS  E  +R  S+M +++  +     G
Sbjct: 1    SEKVLIAQERSAANIVQVFKKAQSNT-PYVAEIRSAVEKGSRLISSMQMKLYEKGEGSKG 59

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              GQ I+ TLPYI+TEIPI IVFRALG V+D+DIL HICYD +DTQM+E+L+P +EEAFV
Sbjct: 60   GFGQTIKCTLPYIKTEIPIAIVFRALGVVSDEDILNHICYDRKDTQMLEMLKPCIEEAFV 119

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++VALD+IGKRG + GVTRDKRIKYA++I+QKE+LPH+   +  ET+KA++ GY++H
Sbjct: 120  IQDREVALDFIGKRGNSQGVTRDKRIKYARDIMQKELLPHISQVEGSETRKAFFLGYMVH 179

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLL CALGRR  DDRDH+G KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N
Sbjct: 180  RLLQCALGRREVDDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFN 239

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            +  A+K+  +T+GL+YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIG
Sbjct: 240  MTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIG 299

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   
Sbjct: 300  RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNM 359

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E  EE  P   P ATKIFVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E
Sbjct: 360  EVLEEYEPLNSPNATKIFVNGVWVGVHRDPAHLVGTVQNLRRRGLISHEVSLVRDIRDRE 419

Query: 617  LRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQ-QRES-----PE-----DGG 658
             +++TD GR  RPLF+++       +  L++ K  ++ L+  RE+     P+     D G
Sbjct: 420  FKVFTDAGRVCRPLFVIDNDPRSSNRGNLVLTKDHVLKLEMDRENWATTEPDVREETDMG 479

Query: 659  WHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPEE----------A 698
            W  LV +G +EY+D EEEET MI MT  DL          V    +PEE           
Sbjct: 480  WQGLVKEGVVEYVDAEEEETIMIVMTPEDLEISRQLQAGYVMPEANPEELNKRVKAPMNP 539

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
             A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT+A
Sbjct: 540  TAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMA 599

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
             +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRS
Sbjct: 600  NILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 659

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LF+R+Y D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIG
Sbjct: 660  LFYRAYTDQEKRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIG 719

Query: 879  KTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 936
            KT PI+ D E  GQ ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +I
Sbjct: 720  KTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKI 779

Query: 937  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 996
            PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ K
Sbjct: 780  PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSK 839

Query: 997  VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            V++  G EGDATPFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQ
Sbjct: 840  VSSLRGFEGDATPFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQ 899

Query: 1057 RLKH 1060
            RL+H
Sbjct: 900  RLRH 903


>gi|6606101|gb|AAF19063.1|AF107791_1 DNA-dependent RNA polymerase II RPB140 [Chaetomium elatum]
          Length = 934

 Score = 1165 bits (3014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/934 (59%), Positives = 705/934 (75%), Gaps = 38/934 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK      +Y AE+RS  E  +R  S++ +++ S+ S + G
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHSKGSPEKG 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
                 +  TLPY+R ++ + IVFRALG V+D+DIL HICYD  DTQM+E LRP +EEAF 
Sbjct: 61   RLANTVSVTLPYVREDVSLGIVFRALGIVSDEDILNHICYDRTDTQMLEALRPCIEEAFC 120

Query: 318  IQNQQVALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            IQ++++ALD+IGKRG    G  R  R++ AK++LQKEMLPH+   + CET+KA++ GY++
Sbjct: 121  IQDREIALDFIGKRGNGNAGQNRMNRVRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 180

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR + R++T+D+ +Y+++C+D  K+ 
Sbjct: 181  HRLLQCALGRRDPDDRDHFGKKRLDLAGPLLAKLFRNVIRRMTQDLMSYMKRCIDTNKNF 240

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            +L   IK  T+T+GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PI
Sbjct: 241  SLALGIKHSTLTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPI 300

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GR+GKLAKPRQLHN+ WG++CPA+TPEGQACGLVKNL+LM Y++VG+ A PI+EF+   G
Sbjct: 301  GRDGKLAKPRQLHNTHWGLVCPADTPEGQACGLVKNLSLMCYVSVGTPADPIVEFMIARG 360

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             E  EE  P   P ATK+FVNG WVG+H+DP+ LV  ++ LRR+  ++ EV +VRDIR +
Sbjct: 361  MEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQGLRRKNVISFEVSLVRDIRDR 420

Query: 616  ELRIYTDYGRCSRPLFIVE----------KQRLLIKKRDIIALQ-----QRESPEDGGWH 660
            E +I++D GR  RPLF VE          K  L++ K  I  L+      +  P+  GW 
Sbjct: 421  EFKIFSDAGRVMRPLFTVEQEPNGESGAEKGALILNKEHIGKLKLDTEYGKYHPDYWGWQ 480

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY-------------------AD 701
             L+  G IEY+D EEEET MI MT  DL Q R   +  +                     
Sbjct: 481  GLLKSGAIEYLDAEEEETVMICMTPQDLDQFRARKQGRFEQDNSGLGNNRIKTKPNPITH 540

Query: 702  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
             YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +L
Sbjct: 541  MYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANIL 600

Query: 762  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
            YYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFF
Sbjct: 601  YYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFF 660

Query: 822  RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
            RSY D EK++G  + E F +P+RS+T+ ++H +YDKLD DG+  PG RVSGED+IIGKT 
Sbjct: 661  RSYTDCEKRVGINIVEQFEKPNRSDTLRLKHSTYDKLDADGIVAPGIRVSGEDIIIGKTC 720

Query: 882  PISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            PI+ D A+ GQ S ++ +RD S  LR +E+G++DQV++TTN DG+R+VKVRVR+ ++PQI
Sbjct: 721  PINPDNAELGQRSNQHVKRDASTPLRSTESGIIDQVVVTTNQDGMRYVKVRVRTTKVPQI 780

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV+ 
Sbjct: 781  GDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVST 840

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
              G EGDATPFTDVTVD++S  L + GYQ RGFE MY+GHTGR+L + +F GPTYYQRL+
Sbjct: 841  LKGMEGDATPFTDVTVDSVSDLLREHGYQSRGFEIMYHGHTGRKLRSQVFFGPTYYQRLR 900

Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            HMVDDKIH+R RGP+QI+TRQP EGR+RDGGLRF
Sbjct: 901  HMVDDKIHARARGPLQIMTRQPVEGRARDGGLRF 934


>gi|6606123|gb|AAF19074.1|AF107802_1 DNA-dependent RNA polymerase II RPB140 [Lasiodiplodia theobromae]
          Length = 942

 Score = 1164 bits (3010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/943 (60%), Positives = 705/943 (74%), Gaps = 49/943 (5%)

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            +KVLIAQE+ + N V VF+KRQ +   ++AE+RS  E  +R  S+M +++  +       
Sbjct: 1    DKVLIAQERSAANIVQVFRKRQ-SPTPWIAEIRSAVEKGSRLLSSMTLKLYEKPQLWKEG 59

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
             G  + ATLPY++ ++PI IVFRALG V+D+DI+ HIC+D  DTQ+ME +RPS+EE+ +I
Sbjct: 60   QGACLYATLPYVKADVPIPIVFRALGIVSDEDIISHICFDKNDTQLMEAIRPSIEESVLI 119

Query: 319  QNQQVALDYIGKRGA--TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            Q++  ALD+IG+RG+  + G T+ +R+K A++I+QKE LPH+   +  ETKKA++ GY+I
Sbjct: 120  QDRVSALDFIGRRGSNPSTGGTKRERVKLARDIIQKEFLPHISQAEGSETKKAFFLGYMI 179

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            +RLL C LGRR EDDRDH+G KRLDLAGPLL  LFR LF KLTRDV +Y++KCV+ G+  
Sbjct: 180  YRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRSLFLKLTRDVFSYLKKCVEAGRPF 239

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            +LQ A+K  TIT+GLKYSLATGNWG Q  AA  +AGVSQVLNR TY+STLSHLRR N+PI
Sbjct: 240  SLQSAVKQGTITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYSSTLSHLRRTNTPI 299

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  +TVGS   PI +F+ +  
Sbjct: 300  GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCNVTVGSDVTPIQDFMTQRN 359

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             E  EE  P V P ATKIF+NG WVG+HRDP  LV  +++LRR   ++ E+ ++RD+R +
Sbjct: 360  MELLEEYEPNVSPHATKIFINGVWVGVHRDPTQLVSVVKKLRRDGTLSPEMSLIRDVRDR 419

Query: 616  ELRIYTDYGRCSRPLFIVE-------KQRLLIKKR-----------DIIALQQRESPEDG 657
            E +I+TD GR  RPLFI++       K  L + +            D+  L   E  E  
Sbjct: 420  EFKIFTDAGRVCRPLFIIDDDPFSPNKGNLALTREHIDKLEADQEIDVSGLSDEERQEKR 479

Query: 658  -GWHDLVAKGFIEYIDTEEEETTMISMTINDLV---QAR--------------------- 692
             GW  L+  G +EY+D EEEE  MI MT +DL    +AR                     
Sbjct: 480  YGWQGLLHSGVVEYMDAEEEEVAMIVMTPDDLRAHHRARQGIIDEDDEETKRNRDPHERV 539

Query: 693  LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 752
            + P       YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TNY+ 
Sbjct: 540  VPPPNPSVKQYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVCLTNYEL 599

Query: 753  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 812
            RMDT+  VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSID
Sbjct: 600  RMDTMVNVLYYPQKPLATTRSMEYLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSID 659

Query: 813  RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 872
            RG FRSLF+RSY D+EKK+G  V E F +P RS+TM ++HG+YDKLDDDG+  PG RVSG
Sbjct: 660  RGLFRSLFYRSYTDQEKKVGMAVVEQFEKPMRSDTMRLKHGTYDKLDDDGVVAPGVRVSG 719

Query: 873  EDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 930
            ED+IIGKT PI+ D E  GQ ++ + +RD S  LR +E G+VD VLLTTN+DGL+FVKVR
Sbjct: 720  EDIIIGKTAPIAPDAEELGQRTKMHIKRDVSTPLRSTENGIVDSVLLTTNSDGLKFVKVR 779

Query: 931  VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 990
             R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+TPD+I+NPHAIPSRMTI  LI
Sbjct: 780  TRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGLTPDLIINPHAIPSRMTIAHLI 839

Query: 991  ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 1050
            EC++ KV A  G EGDATPFTDVTV  +S  L + GYQ RGFE MYNGHTG++LTA +FL
Sbjct: 840  ECLLSKVGALRGXEGDATPFTDVTVXQVSSLLREHGYQSRGFEIMYNGHTGKKLTAQVFL 899

Query: 1051 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            GPTYYQRL+HMVDDKIH+R RGPVQILTRQP EGR+RDGGLRF
Sbjct: 900  GPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 942


>gi|45545315|gb|AAS67505.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Cenococcum geophilum]
          Length = 935

 Score = 1163 bits (3009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/937 (59%), Positives = 707/937 (75%), Gaps = 43/937 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VF+K+Q     + AE+RS  E  +R  ST  ++    +     
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQ-GPIPWTAEIRSAVEKGSRLISTFNIKWAESSLIAKR 59

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + G +  A LPYIR ++P+ +VFRALG V+D+DIL HI YD  DTQM+ELL+PS+EE  +
Sbjct: 60   APGPFAYAILPYIRADVPMSVVFRALGVVSDEDILNHIVYDRNDTQMLELLKPSIEEGSM 119

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++ ALD+I KRG++ G T+DKR+KYA++I+Q+E LPH+   +  +T+KA++ GY+IH
Sbjct: 120  IQDRENALDWIAKRGSSTG-TKDKRLKYARDIMQREFLPHISQKEGQDTRKAFFLGYMIH 178

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+LF KLTRDV  Y+QKCV+N ++ +
Sbjct: 179  RLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFIKLTRDVYKYLQKCVENNQEFS 238

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            +Q A+KA  IT+GLKYSLATGNWG Q  AA ++AGVSQVLNR TYASTLSHLRR N+P+G
Sbjct: 239  IQMAVKASLITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPVG 298

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS + PI +F+ +   
Sbjct: 299  RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSESTPITDFMSQRNM 358

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E  EE  P V P ATK+FVNG WVG+H  P  LV  ++ LRR   ++ E+ ++RDIR +E
Sbjct: 359  ELLEEYDPVVNPSATKVFVNGVWVGVHSQPSQLVTVVQELRRNGTLSYEMSLIRDIRDRE 418

Query: 617  LRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQRE-------SPEDG----- 657
             +I+TD GR  RPLF++E          L++ K  I  L + +       + ED      
Sbjct: 419  FKIFTDAGRVMRPLFVIENNPTKTNRGSLVLNKTHIEKLHEDKEIDVSGLNDEDAEKAKF 478

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQA-------------RLHPE-EA 698
            GW  L+  G +EY+D EEEET MI MT  DL     V A             R+ P+   
Sbjct: 479  GWKGLLHSGVVEYLDAEEEETAMIIMTPEDLEDHHRVSAGTMIYDDGGDPHKRIKPKPNP 538

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
               T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TNY  RM+T+ 
Sbjct: 539  TVKTFTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMM 598

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
             VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRS
Sbjct: 599  NVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 658

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LF+RSY ++EK++G  V E F +P RS+T+ M+ G+YDKLDDDG+  PG RVSG+D+IIG
Sbjct: 659  LFYRSYTEQEKRIGVNVLEQFEKPTRSDTLRMKGGTYDKLDDDGVVAPGVRVSGDDIIIG 718

Query: 879  KTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 936
            KT PI  D  + GQ +  +T+RD S  LR +E G+VDQVL TTN +GLRFVKVR R+ ++
Sbjct: 719  KTAPIPPDAKELGQKTIMHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKV 778

Query: 937  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 996
            PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD+I+NPHAIPSRMTI  LIEC++ K
Sbjct: 779  PQIGDKFASRHGQKGTIGVTYRQEDMPFTREGLTPDLIINPHAIPSRMTIAHLIECLLSK 838

Query: 997  VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            V +  G EGDATPFTDVTV+++SK L + GYQ RGFE MYNGHTG+++ A +FLGPTYYQ
Sbjct: 839  VGSLRGCEGDATPFTDVTVESVSKLLREHGYQSRGFEVMYNGHTGKKMVAQVFLGPTYYQ 898

Query: 1057 RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            RL+HMVDDKIH+R RGP+QILTRQP EGR+RDGGLRF
Sbjct: 899  RLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 935


>gi|6606103|gb|AAF19064.1|AF107792_1 DNA-dependent RNA polymerase II RPB140, partial [Microascus
            trigonosporus]
          Length = 937

 Score = 1162 bits (3007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/937 (59%), Positives = 704/937 (75%), Gaps = 41/937 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKV+IAQE+ + N V VFKK QP+ Y+Y AE+RS  E  +R  S + +R+ S+      
Sbjct: 1    SEKVIIAQERSAANIVQVFKKAQPSPYSYTAEIRSALEKGSRLISQLALRLYSKGGRGAS 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            SSG  + ATLPY+R E PI ++FRA G V+D+DIL HICYD  D+QM+E+L+P +EE+FV
Sbjct: 61   SSGAIVHATLPYVREETPIALIFRAYGVVSDEDILNHICYDRNDSQMLEMLKPCIEESFV 120

Query: 318  IQNQQVALDYIGKRGATVG--VTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 375
            +Q+++VALD+IGKRG   G  +TRDKRI+ AKEILQKE LPH+   +  ET+KA++ GY+
Sbjct: 121  VQDREVALDHIGKRGQQGGFALTRDKRIRTAKEILQKETLPHISQAEGSETRKAFFLGYM 180

Query: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 435
            +H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR + R++  ++ +Y++ C+ N ++
Sbjct: 181  VHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLSKLFRNIMRRMNTELTSYMKMCIQNNRN 240

Query: 436  VNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
              +   I+  T+T+G+KYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+P
Sbjct: 241  FQISQGIRITTLTNGMKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTP 300

Query: 495  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
            IGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +++VG+   PI EF+ + 
Sbjct: 301  IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPTDPIEEFMIDR 360

Query: 555  GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
              E  EE  P   P ATK+FVNG WVG+H++P+ L++ + + RR      EV +VRDIR 
Sbjct: 361  EMEIVEEYEPLRFPNATKVFVNGAWVGVHQEPQRLMEEMIKARRVNSFPAEVSLVRDIRD 420

Query: 615  KELRIYTDYGRCSRPLFIVEKQR----------LLIKKRDIIAL-QQRESPEDG---GWH 660
            +E ++++D GR  RP+F+V ++           L++ K  +  L ++R+ P +     W 
Sbjct: 421  REFKVFSDAGRVMRPVFVVNRENNEYEGVQKGTLVLSKEQVAQLTEERDLPTEQRKLKWE 480

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDL-------VQARLHPEEAYAD------------ 701
            DLV  G +EY+D EEEET MI MT  DL       V+    P     D            
Sbjct: 481  DLVRSGAVEYLDAEEEETAMICMTPEDLELFRQTKVEGHQVPPPNINDEPNRRLKTDLNP 540

Query: 702  ---TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
               TYTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A
Sbjct: 541  TTYTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYMRRMDTMA 600

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
             +LYYPQKPL TT AMEHL FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRS
Sbjct: 601  NILYYPQKPLATTMAMEHLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 660

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSY D EK++G  + E F +P RS T+ ++HG+YDKLD+DG+  PG RVSGED+IIG
Sbjct: 661  LFFRSYTDCEKRVGINLLEQFEKPFRSETLRLKHGTYDKLDEDGIVAPGVRVSGEDIIIG 720

Query: 879  KTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 936
            KT+P+S +  + GQ  +++T+RD S  LR +E+G+VD V+ TTNADG+++VKVRVR+ ++
Sbjct: 721  KTSPLSPESQELGQRTTQHTQRDASTPLRSTESGIVDSVVFTTNADGMKYVKVRVRTTKV 780

Query: 937  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 996
            PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ K
Sbjct: 781  PQIGDKFASRHGQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLLSK 840

Query: 997  VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            VA   G EGDATPFTDVTVD++S  L   GY  RGFE MYNGHTG++L A +F GPTYYQ
Sbjct: 841  VATLKGLEGDATPFTDVTVDSVSALLRAEGYHSRGFEIMYNGHTGKKLRAQVFFGPTYYQ 900

Query: 1057 RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            RL+HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRF
Sbjct: 901  RLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRF 937


>gi|6606119|gb|AAF19072.1|AF107800_1 DNA-dependent RNA polymerase II RPB140 [Dothidea insculpta]
 gi|82706467|gb|ABB89611.1| RNA polymerase II second largest subunit, partial [Dothidea
            insculpta]
          Length = 936

 Score = 1161 bits (3004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/938 (59%), Positives = 708/938 (75%), Gaps = 44/938 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VF+K+  +    VAE+RS  E  +R  S+M +++ S+  ++ G
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKG-SPTPVVAEIRSAVEKGSRLISSMQLKLFSKGDSQKG 59

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              G  I+ATLPYI+++IPI IVFRALG V+D  IL+ ICYD  D+QM E+++P LEEAFV
Sbjct: 60   GLGGTIKATLPYIKSDIPIAIVFRALGVVSDMQILDCICYDANDSQMREMIKPCLEEAFV 119

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++VALD+IGKRG  +G TR+ RI+YA++++QKE LPH+   +  ET+KA++ GY+I+
Sbjct: 120  IQDREVALDFIGKRGQQMG-TREXRIRYARDVMQKEFLPHISQKEGSETRKAFFLGYMIN 178

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLL CALGR  EDDRDH+G KRLDLAGPL+  +FR+ F +L RD R Y+ +CV+ GK+ N
Sbjct: 179  RLLQCALGRVEEDDRDHFGKKRLDLAGPLMAQVFRLKFTQLIRDTRVYLSRCVEGGKEFN 238

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+KA  ++SGL+Y LATGNWG Q  AA  +AGVSQVLNR TYASTLSHLRR N+PIG
Sbjct: 239  LTLAVKANILSSGLRYCLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPIG 298

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VG+ + PI+EF+ +   
Sbjct: 299  RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPSEPIIEFMNQRNM 358

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E  EE  P   P ATK+FVNG WVG+HRDP  LVK ++ LRR   ++ E+ ++RD+R +E
Sbjct: 359  ELLEEYEPKNNPDATKVFVNGVWVGVHRDPAQLVKVVQSLRRSGTISFEISLIRDVRDRE 418

Query: 617  LRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQ-QRESPEDG----------- 657
             +I+TD GR  RPLF+V+ +        L++ + +I  LQ  RE    G           
Sbjct: 419  FKIFTDAGRVMRPLFVVDNEPTSERRGHLVLARSNIERLQTDREMDLTGLSEEQRDSNIY 478

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-------------LHPEEAY----- 699
            GW  L+  G IEY+D EEEE  MI+M+  DL + R             L P   +     
Sbjct: 479  GWKGLIGDGIIEYLDAEEEEAAMITMSPEDLDEHRQVRAGAPVYDDVGLDPHRRFKAKPN 538

Query: 700  --ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
                 +THCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TNY  RMDT+
Sbjct: 539  QSVRMWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVTLTNYNVRMDTM 598

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIACY GYNQEDSVIMNQSSIDRG FR
Sbjct: 599  ANVLYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYGGYNQEDSVIMNQSSIDRGLFR 658

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLF+R+Y D+EK++G  V E F +P R++T+ M+HG+YDKLDDDG+  PG+RVSGED+II
Sbjct: 659  SLFYRAYMDQEKRVGMSVVEQFEKPTRADTLRMKHGTYDKLDDDGIISPGSRVSGEDIII 718

Query: 878  GKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKT P++ D E  GQ ++ + +RD S  LR +E+G++DQVLLTTN DG +FVKVR R+ +
Sbjct: 719  GKTAPMAPDAEELGQRTKLHVKRDVSTPLRSTESGIIDQVLLTTNIDGHKFVKVRTRTTK 778

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            IPQIGDKF+SRHGQKGT+G+TY QEDMP+T +G+ PD+I+NPHAIPSRMTI  LIEC++ 
Sbjct: 779  IPQIGDKFASRHGQKGTIGVTYRQEDMPFTADGLVPDLIINPHAIPSRMTIAHLIECLLS 838

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KV A  G+EGDATPFTDVT+  +S  L   G+Q RGFE MYNGHTG++  A +FLGPTYY
Sbjct: 839  KVGALRGQEGDATPFTDVTITQVSDLLRAHGFQQRGFEIMYNGHTGKKQVAQVFLGPTYY 898

Query: 1056 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            QRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRF
Sbjct: 899  QRLRHMVDDKIHARARGPXQILTRQPVEGRARDGGLRF 936


>gi|67810752|gb|AAY82003.1| RNA polymerase II second largest subunit [Psilotum nudum]
          Length = 614

 Score = 1160 bits (3002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/613 (88%), Positives = 574/613 (93%), Gaps = 1/613 (0%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALM YITVGSAA PILEFLEEW TENFEEISPAVIPQAT
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMSYITVGSAANPILEFLEEWSTENFEEISPAVIPQAT 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNGCWVGIHRDPE+LV+TLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLF
Sbjct: 61   KIFVNGCWVGIHRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVE QRLLIKK  I ALQQ+ES     W+DLVAKGFIEY+DTEEEETTMISM  +D   A
Sbjct: 121  IVENQRLLIKKSHIRALQQKESTX-SAWYDLVAKGFIEYVDTEEEETTMISMNXSDXEAA 179

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            R HPEEAY+DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180  RDHPEEAYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDTLAYVL+YPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSSI
Sbjct: 240  LRMDTLAYVLFYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSI 299

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRS+F+RSYRDEE K GTLVKE+F RP+R     MRHGSYDKLDDDGL PPGTRVS
Sbjct: 300  DRGFFRSIFYRSYRDEEXKQGTLVKEEFERPNRETXTNMRHGSYDKLDDDGLTPPGTRVS 359

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKTTP+SQD+   QA RY++RD S  LR SE+GM+DQVLLTTNADGLRFVK+RV
Sbjct: 360  GEDVIIGKTTPLSQDDTGNQAQRYSKRDQSTCLRXSESGMIDQVLLTTNADGLRFVKIRV 419

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RS+R+PQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGI+PDIIVNPHAIPSRMTIGQLIE
Sbjct: 420  RSIRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGISPDIIVNPHAIPSRMTIGQLIE 479

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            CIMGKVAAHMG+EGDATPFTDVTVD+ISKALHKCGYQMRGFETMYNGHT RRL AMIF+G
Sbjct: 480  CIMGKVAAHMGREGDATPFTDVTVDSISKALHKCGYQMRGFETMYNGHTXRRLNAMIFIG 539

Query: 1052 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLK 1111
            PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA+HFLK
Sbjct: 540  PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLK 599

Query: 1112 ERLFDQSDAYRVH 1124
            ERLFDQSDAYRVH
Sbjct: 600  ERLFDQSDAYRVH 612


>gi|6606117|gb|AAF19071.1|AF107799_1 DNA-dependent RNA polymerase II RPB140 [Aureobasidium pullulans]
          Length = 936

 Score = 1160 bits (3000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/940 (59%), Positives = 707/940 (75%), Gaps = 48/940 (5%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR-TSAKG 256
            SEKVLIAQE+ + N V VFKK+  +    VAE+RS  E   R  S+M +++  +    KG
Sbjct: 1    SEKVLIAQERSAANIVQVFKKKG-SPTPIVAEIRSATEKGTRLLSSMQLKLYQKGEQKKG 59

Query: 257  GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
            G     I+ATLPYI+ +IPI+IVFRALG V+D  IL+ ICYD  DTQ+ E+++P LEEAF
Sbjct: 60   GILTGTIKATLPYIKADIPIVIVFRALGIVSDMQILDCICYDANDTQLREMIKPCLEEAF 119

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            V+Q+++ ALD+IGKRG  VG  ++KRI+YA++ILQKE LPH+   +  ET+KA++ GY+I
Sbjct: 120  VVQDRENALDFIGKRGNQVG-GKEKRIRYARDILQKEFLPHISQREGSETRKAFFLGYMI 178

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            +R+    LGR  EDDRDH+G KRLDL+GPL+  +FR+ F +L RD+R Y+ +C++ G+D 
Sbjct: 179  NRMCQVMLGRCDEDDRDHFGKKRLDLSGPLMAQVFRLKFTQLVRDMRVYLSRCIEQGRDF 238

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            NL  A+K+  +TSGL+Y LATGNWG Q  AA  +AGVSQVLNR TYASTLSHLRR N+PI
Sbjct: 239  NLTLAVKSNILTSGLRYCLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPI 298

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VG+ A PI+EF+ +  
Sbjct: 299  GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVEFMNQRN 358

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             E  EE  P   P ATK+FVNG WVG+HRDP  LVK ++ LRR   ++ E+ ++RD+R +
Sbjct: 359  MELLEEYEPKNNPDATKVFVNGVWVGVHRDPSQLVKVVQSLRRNGTISFEISLIRDVRER 418

Query: 616  ELRIYTDYGRCSRPLFIVEK------------------QRLLIKKRDIIALQQRESPEDG 657
            E +I+TD GR  RPLF+V                    Q L  ++ D I L + E   DG
Sbjct: 419  EFKIFTDAGRVMRPLFVVNNDPASPTKGQLTLNRSHISQLLNARETDTIGLSEEE--RDG 476

Query: 658  ---GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLHPEEAYAD-------- 701
               GW +L++ G +EY+D EEEE  M+ M+  DL     ++A L  EE   D        
Sbjct: 477  TIYGWKNLISDGVVEYLDAEEEEVAMMVMSPEDLDEHRQMRAGLVYEEPVTDPHRRIKSR 536

Query: 702  ------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
                  T+THCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI +TNY  RMD
Sbjct: 537  PNANVRTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGITLTNYNVRMD 596

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG 
Sbjct: 597  TMANVLYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGL 656

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLF+R+Y D+EK++G  V E F +P R +TM M+HG+YDKLDDDG+  PGTRVSGED+
Sbjct: 657  FRSLFYRAYMDQEKRVGMSVVEQFEKPTRGDTMRMKHGTYDKLDDDGIIAPGTRVSGEDI 716

Query: 876  IIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            IIGKT P++ D E  GQ +++  +RD S  LR +E+G++DQVLLTTN +GL+FVKVR R+
Sbjct: 717  IIGKTAPMAPDAEELGQRTKFHIKRDVSTPLRSTESGLIDQVLLTTNVEGLKFVKVRTRT 776

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T +G+ PDII+NPHAIPSRMTI  LIEC+
Sbjct: 777  TKIPQIGDKFASRHGQKGTIGITYRQEDMPFTADGLVPDIIINPHAIPSRMTIAHLIECL 836

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1053
            + KV +  G+EGDATPFTDVTV  IS  L + G+Q RGFE MYNGHTGR++ A +FLGPT
Sbjct: 837  LSKVGSLRGQEGDATPFTDVTVTQISDLLRQHGFQQRGFEVMYNGHTGRKMNAQVFLGPT 896

Query: 1054 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            YYQRL+HMVDDKIH+R RGP QILTRQP EGR+RDGGLRF
Sbjct: 897  YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 936


>gi|6606099|gb|AAF19062.1|AF107790_1 DNA-dependent RNA polymerase II RPB140 [Podospora anserina]
          Length = 934

 Score = 1157 bits (2993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/934 (59%), Positives = 701/934 (75%), Gaps = 38/934 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK      +Y AE+RS  E  +R  S++ +++ ++ S + G
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHTKASNEKG 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
                 +  TLPY+R ++ + IVFRALG V+D+DIL HICYD +DTQM+E LRP +EEAF 
Sbjct: 61   RLANTVSVTLPYVREDVSLAIVFRALGIVSDEDILNHICYDRKDTQMLEALRPCIEEAFC 120

Query: 318  IQNQQVALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            IQ++++ALD+IGKRG   +G  R  RI+ AK++LQKEMLPH+   + CET+KA++ GY++
Sbjct: 121  IQDREIALDFIGKRGNGNMGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 180

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            ++LL CALGRR  DDRDH+G KRLDLAGPLL  LFR + R++T+D+  Y+++C+D  K  
Sbjct: 181  NKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCLDTNKHF 240

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
             L   IKA T+T+ LKYSLATGNWG Q  A  + AGVSQVLNR T+ASTLSHLRR N+PI
Sbjct: 241  TLALGIKANTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 300

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VG+ A PI++F+   G
Sbjct: 301  GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVDFMTARG 360

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             +  EE  P   P ATK+FVNG WVG+H DP+ LV  ++ LRR+  ++ EV +VRDIR +
Sbjct: 361  MDVLEEYEPLRAPNATKVFVNGTWVGVHNDPKQLVTLVQDLRRKNVISFEVSLVRDIRER 420

Query: 616  ELRIYTDYGRCSRPLFIVEKQR---------LLIKKRDIIALQQRES------PEDGGWH 660
            E +I++D GR  RPLF VE++           LI  +D IA  QR+       P+  GW 
Sbjct: 421  EFKIFSDAGRVMRPLFTVEQEEKGNHGVEKGQLILNKDHIARLQRDKELGKYHPDYWGWQ 480

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT------------------ 702
             L+  G IEY+D EEEETTMI MT  DL   R+     + +T                  
Sbjct: 481  GLLKSGAIEYLDAEEEETTMICMTPQDLDDFRMTKLGFHIETTSGQGNNRIRTKVNKTTH 540

Query: 703  -YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
             YTHCEIHP+++LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A +L
Sbjct: 541  MYTHCEIHPAMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANIL 600

Query: 762  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
            YYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSV+MNQSSIDRG FRSLFF
Sbjct: 601  YYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVVMNQSSIDRGIFRSLFF 660

Query: 822  RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
            RSY D EK++G  + E F +P R +T+ ++HG+YDKLD DG+  PG RVSGED+IIGKT+
Sbjct: 661  RSYTDCEKRVGINIVEMFEKPTRGDTLRLKHGTYDKLDADGIIAPGIRVSGEDIIIGKTS 720

Query: 882  PISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            PI+ D A+ GQ   ++ +RD S  LR +E+G+VD V+LTTN DG+R+VKVRVR+ +IPQI
Sbjct: 721  PINPDNAELGQRQQQHVKRDASTPLRSTESGIVDSVVLTTNQDGMRYVKVRVRTTKIPQI 780

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKF+SRHGQKGT+G+TY  EDMP+T EGITPDII+NPHAIPSRMTI  L+EC++ KVA 
Sbjct: 781  GDKFASRHGQKGTIGLTYRMEDMPFTAEGITPDIIINPHAIPSRMTIAHLVECLLSKVAT 840

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
              G EGDATPFTDVTVD++S  L + GYQ RGFE +Y+GHTGR+L A  F GPTYYQRL+
Sbjct: 841  LKGLEGDATPFTDVTVDSVSDLLREQGYQSRGFEILYHGHTGRKLRAQCFFGPTYYQRLR 900

Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            HMVDDKIH+R RGPVQI+TRQP EGR+RDGGLRF
Sbjct: 901  HMVDDKIHARARGPVQIMTRQPVEGRARDGGLRF 934


>gi|162606010|ref|XP_001713520.1| DNA-directed RNA polymerase II second largest subunit [Guillardia
            theta]
 gi|13794440|gb|AAK39815.1|AF165818_23 DNA-directed RNA polymerase II second largest subunit [Guillardia
            theta]
          Length = 1206

 Score = 1157 bits (2993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/1203 (47%), Positives = 798/1203 (66%), Gaps = 58/1203 (4%)

Query: 29   WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIY 88
            W ++  +F +KGLV QQ++SF+ FIQNTMQ+I+D+   I +  +  ++PG     ++   
Sbjct: 12   WHILKLFFIQKGLVDQQINSFNNFIQNTMQDIIDDMPPITVYID--NDPGNDDLLSKIRM 69

Query: 89   KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148
             I  GQ++LSKP   E DG    L P  ARLRNLTYS+PLY +++  +IK     + + +
Sbjct: 70   VIRLGQLHLSKPTYIEDDGLVHNLVPNEARLRNLTYSSPLYCEISTSIIKNEKSIDYILK 129

Query: 149  TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208
             Q   K+ IG++PIM++S +C L     K L  LGECP D GGYFI+NGSEKV++AQE++
Sbjct: 130  -QFSEKILIGRIPIMIKSKFCILSNLDIKCLKNLGECPDDPGGYFIVNGSEKVIVAQEQL 188

Query: 209  STNHVYVFKKRQPNK------------YAYVAEVRSMAESQNRPPSTMFVRM-------- 248
            S N VY+F+K +  +            Y Y AE RS+A+     PS + V++        
Sbjct: 189  SWNKVYIFQKNENLRNTIKIKNYTVEGYLYFAECRSVADYSKWSPSLLTVKVCLCPYKDQ 248

Query: 249  ---LSRTSAKGGS------SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF 299
               + + + K  S       G Y+R  LPY + +IPI  +F+ALGF  + +IL++ICYD 
Sbjct: 249  KFSIFKKNLKFNSPEIFLSGGFYLRMMLPYFKKDIPITWIFKALGFENEIEILDYICYDS 308

Query: 300  QDTQMMELLR-----------PSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKE 348
            QD  ++ ++R            SL  +  I +Q+ AL  IG+  +     +  RIK+A E
Sbjct: 309  QDEDLISIVRYIVEDDKISTQNSLSISCPILDQETALAAIGQHVSKG--PQGIRIKFAYE 366

Query: 349  ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG 408
            +LQKE LPH+G G   E +K Y+FGYII++L+   +G+R  DDRDHYG KRLD  GPLL 
Sbjct: 367  VLQKEFLPHIGIGQGFELRKGYFFGYIINKLISTQIGKRKMDDRDHYGYKRLDTVGPLLS 426

Query: 409  GLFRMLFRKLTRDVRAYVQKCVDN-GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
             LFR L  K+ ++ +  VQK +    K   L+   K+  +T+G++Y+L+TGNWG  +   
Sbjct: 427  QLFRQLLGKVLKEFKTNVQKKIHRLDKKFELKDFFKSNYVTTGIQYALSTGNWG-TDKQS 485

Query: 468  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
             R G+SQVLNRL+Y+STLSHLRR+NSP  +  K+ KPR LHNS WG +CP ETPEG +CG
Sbjct: 486  LRTGISQVLNRLSYSSTLSHLRRVNSPSAKGNKITKPRHLHNSHWGYICPVETPEGHSCG 545

Query: 528  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
            LVKNLAL   IT+G++   I+E LE  G E+ EE +   +  + K+FVNGCW+G H++P 
Sbjct: 546  LVKNLALTAMITIGTSPLFIIEKLENLGLESLEEYNSDKLKSSFKVFVNGCWIGTHKNPF 605

Query: 588  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
             L+  ++  RRR   + E+ ++ D   KE++I++D GR  RPL I+ ++ ++        
Sbjct: 606  ALISKMKIYRRRNIFSEEISIILDDYDKEIKIFSDSGRVIRPLLIINEENIIKINNKQKY 665

Query: 648  LQQRESPED--GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTH 705
            L      +     +  L+ +G +EY+D EEEET +ISM  N      LH ++     YTH
Sbjct: 666  LHNLTDDQSIYSNFQQLLEEGILEYVDPEEEETCLISMFYNFKYLKNLHTQKI---KYTH 722

Query: 706  CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 765
            CE+HPS+ILGVCAS+IPF DHNQSPRNTYQ+AMGKQA+GI V+NY FRMDT+ ++LYYPQ
Sbjct: 723  CELHPSVILGVCASLIPFCDHNQSPRNTYQAAMGKQAIGINVSNYDFRMDTMCHILYYPQ 782

Query: 766  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 825
            KPLV T++M  + F+  P GINAIVAIACY GYNQEDS+IM+Q SIDRG FRS FFR+Y+
Sbjct: 783  KPLVCTKSMNFIKFKDFPNGINAIVAIACYGGYNQEDSIIMSQDSIDRGLFRSFFFRNYK 842

Query: 826  DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
            D EK      KE F  P+  +  G++  SY+KLD DGL   G +V+  D+IIGKT P + 
Sbjct: 843  DVEKIKFGGKKETFEIPNWKSCNGIKIHSYEKLDLDGLIGEGKKVNSNDIIIGKTCPTNL 902

Query: 886  DEAQGQASRY------TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
             +   +  R        + D S S+++ ETG+VD+V+L  + +G R VK+R+RSVR+PQI
Sbjct: 903  FDNNNEDLRLLGKNLKIKTDCSSSIKNFETGVVDKVILAKSDEGFRLVKIRIRSVRLPQI 962

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKF+SRHGQKG +GM Y Q +MP++ +GI+PDII+NPHAIPSRMTIG L+EC++ K  +
Sbjct: 963  GDKFASRHGQKGIIGMIYRQVNMPFSEQGISPDIIMNPHAIPSRMTIGHLLECLLSKAVS 1022

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
              G EGD TPF    +++I   L K  +   G+E +YNG  G+R+ ++IF+GPTYYQ+LK
Sbjct: 1023 MKGIEGDGTPFERQNMEDIMNFLEKNNFDKNGWEILYNGFNGKRIKSLIFMGPTYYQKLK 1082

Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
            HMV+DKIHSR RGP+QILTRQP EGRSR+GGLRFGEMERDCMI+HGA+ FLK+RLFDQSD
Sbjct: 1083 HMVEDKIHSRARGPIQILTRQPVEGRSREGGLRFGEMERDCMISHGAAIFLKDRLFDQSD 1142

Query: 1120 AYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
             + ++VC+ CG I ++N K+N+FECR C N++ I  + IPYA KLL QELM++++  R++
Sbjct: 1143 PFGIYVCDFCGFIVVSNKKQNNFECRNCSNRSMISFIRIPYAFKLLIQELMSLSVGVRLI 1202

Query: 1180 TKE 1182
              E
Sbjct: 1203 PGE 1205


>gi|520507|gb|AAA50224.1| RNA polymerase II, second largest subunit, partial [Caenorhabditis
            elegans]
          Length = 859

 Score = 1157 bits (2992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/866 (64%), Positives = 669/866 (77%), Gaps = 15/866 (1%)

Query: 202  LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS-- 259
            LIAQEKM+TN VYVF  +   KYA+  E RS  E+ +RP STM+V ML+R    G  +  
Sbjct: 1    LIAQEKMATNTVYVFSMKD-GKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAM 59

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
            GQ I   LPYI+ EIPI+IVFRALGFV+D+DIL HI YDF D +MME+++PSL+EAFVIQ
Sbjct: 60   GQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVIQ 119

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
             Q VAL++IG RGA  GVTR++RIKYA+EILQKE+LPHVG  + CETKKA++ GY++HRL
Sbjct: 120  EQNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRL 179

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            LL ALGRR  DDRDH GNKRLDLAGPLL  LFR LFR L +++R   QK ++   D  L 
Sbjct: 180  LLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALD 239

Query: 440  FAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
              +K  TIT GL YSLATGNWG Q  A  +RAGVSQVLNRLTY +TLSHLRR NSPIGRE
Sbjct: 240  VCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGRE 299

Query: 499  GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
            GKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI+VGS   PILEFLEEW  EN
Sbjct: 300  GKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMEN 359

Query: 559  FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV-NTEVGVVRDIRLKEL 617
             EE+SP+ I  ATKIFVNG WVGIHR+P+ L+ TL++LRR++D+  +EV +VRDIR +E+
Sbjct: 360  LEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREI 419

Query: 618  RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEYIDTEEE 676
            RIYTD GR  RPL IVE Q+L +KKR I  L++     +   W DLV  G +E ID+ EE
Sbjct: 420  RIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEE 479

Query: 677  ETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
            ET+MI+M   DL          Y DT+THCEIHP++ILGVCASIIPFPDHNQSPRNTYQS
Sbjct: 480  ETSMIAMMPEDLRSG------GYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS 533

Query: 737  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
            AMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F +LPAGINAIVAI  YS
Sbjct: 534  AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYS 593

Query: 797  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 856
            GYNQEDSVIMN S+IDRG FRS+F+RSYRD E  +    +E   +P R    GMRH  YD
Sbjct: 594  GYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYD 653

Query: 857  KLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVDQ 914
            KLD+DG+  PG RVSG+DVIIGKT   P   D+      +Y +RD S  LR SETG+VDQ
Sbjct: 654  KLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQ 713

Query: 915  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 974
            V+L+ N+DG +FVK+R+RSVR+PQIGDKF+SRHGQKGT+G+ Y QEDMP+T EG+TPDII
Sbjct: 714  VMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDII 773

Query: 975  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFE 1033
            +NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATPF D V V  IS  L + GY +RG E
Sbjct: 774  INPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNE 833

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLK 1059
             MYNGHTG++LT  IF GPTYYQRLK
Sbjct: 834  VMYNGHTGKKLTTQIFFGPTYYQRLK 859


>gi|260944180|ref|XP_002616388.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
 gi|238850037|gb|EEQ39501.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
          Length = 858

 Score = 1155 bits (2989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/850 (64%), Positives = 663/850 (78%), Gaps = 43/850 (5%)

Query: 375  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
            +++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLTRD+  Y+Q+CV+N K
Sbjct: 1    MVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRLLFKKLTRDIYNYMQRCVENDK 60

Query: 435  DVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
            + NL  A+K++TIT GL+YSLATGNWG Q  A   RAGVSQVLNR TY+STLSHLRR N+
Sbjct: 61   EFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTLSHLRRTNT 120

Query: 494  PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 553
            PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+A+ PIL FLEE
Sbjct: 121  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTASEPILYFLEE 180

Query: 554  WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIR 613
            WG E  E+  P+  P  T++FVNG WVG HR+P  LV T+RRLRR+ D++ EV ++RDIR
Sbjct: 181  WGMEPLEDYVPSNSPDCTRVFVNGVWVGTHREPAQLVDTMRRLRRKGDISPEVSIIRDIR 240

Query: 614  LKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG--------G 658
             +E +I+TD GR  RPLFIV+       K  L+++K  I  L   E  E           
Sbjct: 241  EREFKIFTDAGRVYRPLFIVDDDPESETKGDLVLQKEHIHKLINSEYDEYDEESQANAYT 300

Query: 659  WHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPEEAYAD------- 701
            W  LV  G +EY+D EEEET MI+MT +DL           Q  L  EE   D       
Sbjct: 301  WSSLVNDGVVEYVDAEEEETIMIAMTPDDLEASKSSLSETQQKSLQLEEQELDPAKRIKP 360

Query: 702  -------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
                   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM
Sbjct: 361  TYTSSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRM 420

Query: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
            DT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG
Sbjct: 421  DTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRG 480

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
             FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  PG RVSGED
Sbjct: 481  LFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGED 540

Query: 875  VIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
            +IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +FVKVR+R
Sbjct: 541  IIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMR 600

Query: 933  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
            + +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD+I+NPHAIPSRMT+  LIEC
Sbjct: 601  TTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPDLIINPHAIPSRMTVAHLIEC 660

Query: 993  IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1052
            ++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MYNGHTG++L A +F GP
Sbjct: 661  LLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGP 720

Query: 1053 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 1112
            TYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKE
Sbjct: 721  TYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKE 780

Query: 1113 RLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMA 1171
            RL + SDA+RVHVC  CGL++ IANLKKN FECR CKNKT+I Q+HIPYA KLLFQELMA
Sbjct: 781  RLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMA 840

Query: 1172 MAIAPRMLTK 1181
            M I+PR+ T+
Sbjct: 841  MNISPRLYTE 850


>gi|46277261|gb|AAS86821.1| RNA polymerase II second largest subunit, partial [Akebia
            longeracemosa]
          Length = 575

 Score = 1154 bits (2986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/575 (94%), Positives = 565/575 (98%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAARPILEFLEEWSTENFEEISPAVIPQATKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQ+L
Sbjct: 61   WVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQQL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK+DI ALQQRE+PE+GGWH+LVAKGFIEY+DTEEEETTMISMTINDLV AR +PEEA
Sbjct: 121  LIKKKDIRALQQRETPEEGGWHELVAKGFIEYVDTEEEETTMISMTINDLVSARFNPEEA 180

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 181  YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 240

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            L FRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPG RVSGEDVIIG
Sbjct: 301  LSFRSYRDEEKKMGTLVKEDFGRPNRDNTMGMRHGSYDKLDDDGLAPPGIRVSGEDVIIG 360

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KTTPI+Q+E+QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQ
Sbjct: 361  KTTPIAQEESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 420

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRL
Sbjct: 481  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRL 540

Query: 1059 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 541  KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 575


>gi|45545333|gb|AAS67514.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Melanomma radicans]
          Length = 936

 Score = 1154 bits (2984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/938 (59%), Positives = 701/938 (74%), Gaps = 44/938 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VF+K+Q     + AE+RS  E   R  S+  ++    +     
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQ-GPIPWTAEIRSAVEKGTRLISSFNIKWTDNSLILKR 59

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + G +  A LPYI+ ++P+ IVFRALG V+D+DIL HI YD +DTQM+ELL+PS+EE  +
Sbjct: 60   TPGPFAYALLPYIKADVPMAIVFRALGIVSDEDILNHIVYDREDTQMLELLKPSIEEGSM 119

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++ ALD+I +RG T G T+++R+K+AKEI+Q+E LPH+   +  +T+KA++FGY+IH
Sbjct: 120  IQDRENALDWIARRGNTTG-TKERRLKFAKEIMQREFLPHISQREGADTRKAFFFGYMIH 178

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+LF KLT+DV  Y+QKCV+N ++ N
Sbjct: 179  RLLQCVLGRREEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVFKYLQKCVENNQEFN 238

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            +Q A+K   +T+GLKYSLATGNWG Q  AA  +AGVSQVLNR TYASTLSHLRR N+P+G
Sbjct: 239  VQMAVKGSVLTNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVG 298

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VG+ + PI +++ +   
Sbjct: 299  RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTESTPITDYMSQRQM 358

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E  EE  P V P A K+FVNG WVG H +P  LV  ++ LRR   ++ E+ ++RDIR +E
Sbjct: 359  ELLEEYDPVVNPSAIKVFVNGVWVGTHNNPTQLVNNVQELRRNGTLSYEMSLIRDIRDRE 418

Query: 617  LRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIAL-QQRE------SPEDG----- 657
             +I+TD GR  RPLF+VE +       +L++ K  +  L   RE      S ED      
Sbjct: 419  FKIFTDAGRVMRPLFVVENRLNQANVGQLVLNKGHVQKLLDDREIDTSGMSDEDAASVKF 478

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDL---------VQARLHPEE----------- 697
            GW  L+  G IEY+D EEEET MI MT  DL         V A   P+E           
Sbjct: 479  GWRGLLHSGVIEYLDAEEEETAMIVMTPEDLEEHRELQLGVTAPAVPDEDRHRRIKPKPN 538

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
                 YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TNY  RM+T+
Sbjct: 539  PSVRFYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETM 598

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
              VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FR
Sbjct: 599  MNVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 658

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLF+R+Y ++EK++G  V E F +P R++T+ ++ G+YDKLDDDG+  PG RVSG+D+II
Sbjct: 659  SLFYRAYTEQEKRIGVNVLERFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIII 718

Query: 878  GKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKT PI  D  E   + + +T+RD S  LR +E G+VDQVL TTN +GLRFVKVR R+ +
Sbjct: 719  GKTAPIPTDAKELGQKTTMHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTK 778

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            +PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD+I+NPHAIPSRMTI  L+EC++ 
Sbjct: 779  VPQIGDKFASRHGQKGTIGITYRQEDMPFTREGLTPDLIINPHAIPSRMTIAHLVECLLS 838

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KV +  G EGDATPFTDVTVD +S  L + GYQ RGFE MYNGHTG++L A +FLGPTYY
Sbjct: 839  KVGSLKGNEGDATPFTDVTVDGVSNLLAQHGYQQRGFEVMYNGHTGKKLRAQVFLGPTYY 898

Query: 1056 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            QRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGGLRF
Sbjct: 899  QRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 936


>gi|40643998|emb|CAD91516.1| RNA polymerase II second largest subunit [Garrya elliptica]
          Length = 576

 Score = 1152 bits (2981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/576 (96%), Positives = 573/576 (99%)

Query: 524  QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 583
            QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH
Sbjct: 1    QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 60

Query: 584  RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 643
            RDP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+
Sbjct: 61   RDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKK 120

Query: 644  DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 703
            DI ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL+ A+L+PE+AY+DTY
Sbjct: 121  DIQALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLLSAKLNPEDAYSDTY 180

Query: 704  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY
Sbjct: 181  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 240

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS
Sbjct: 241  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 300

Query: 824  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 883
            YRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI
Sbjct: 301  YRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 360

Query: 884  SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
            +QD++QGQASRYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF
Sbjct: 361  AQDDSQGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 420

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            SSRHGQKGT+GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK
Sbjct: 421  SSRHGQKGTIGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 480

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD
Sbjct: 481  EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 540

Query: 1064 DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1099
            DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD
Sbjct: 541  DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 576


>gi|6606125|gb|AAF19075.1|AF107803_1 DNA-dependent RNA polymerase II RPB140 [Curvularia brachyspora]
          Length = 942

 Score = 1151 bits (2978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/944 (58%), Positives = 701/944 (74%), Gaps = 50/944 (5%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VF+K+Q     ++AE+RS  E   R  S+  ++    + A  G
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQ-GPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGPG 59

Query: 258  S--SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA 315
                G +  ATLPYI+ ++P+ IVFRALG V+D++IL HI YD  DTQM+ELL+PS+EE 
Sbjct: 60   KRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEG 119

Query: 316  FVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 375
             V+Q+++ ALD+I KRGA  G T+D+R+K+A++I+Q+E LPH+   +  +T+KAY+FGY+
Sbjct: 120  SVVQDRETALDFIAKRGANSG-TKDRRLKFARDIMQREFLPHISQKEGQDTRKAYFFGYM 178

Query: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 435
            IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+LF KLT+DV  Y+Q+CV+N +D
Sbjct: 179  IHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQD 238

Query: 436  VNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
             N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGVSQVLNR TYASTLSHLRR N+P
Sbjct: 239  FNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTP 298

Query: 495  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
            +GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL+LM Y++VGS A PI++F+ + 
Sbjct: 299  VGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDASPIIDFMTQR 358

Query: 555  GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
              +  EE      P ATK+FVNG WVG+H + + LV  ++ LRR   ++ E+ ++RDIR 
Sbjct: 359  NMQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTVVQELRRNGTLSYEMSLIRDIRD 418

Query: 615  KELRIYTDYGRCSRPLFIVE-------KQRLLIKK---RDIIALQQRESPEDG------- 657
            +E +I+TD GR  RPLF+VE       +  L+  K     + A Q   S   G       
Sbjct: 419  REFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFTKEISNKLKAEQSETSTRQGWSQEEVE 478

Query: 658  ----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ---------------------AR 692
                GW  L+  G +EY+D EEEET MI+ +  DL +                      R
Sbjct: 479  QATYGWRGLIQDGVVEYLDAEEEETAMITFSPEDLEEWREMKMGLPAAERSTEGKDRLRR 538

Query: 693  LHP-EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            L P  +    +YTHCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TN+ 
Sbjct: 539  LKPLPDPRIHSYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNFA 598

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIA Y GYNQEDSVIMNQSSI
Sbjct: 599  LRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSI 658

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRG FRSLF+R+Y ++EK++G  V E F +P R++T+ ++ G+YDKLDDDG+  PG RVS
Sbjct: 659  DRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVS 718

Query: 872  GEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 929
            G+D+IIGKT PI+ D  E   + + +T+RD S  LR +E G+VDQVL TTN +GLRFVKV
Sbjct: 719  GDDIIIGKTAPIAADAQELGQKTTMHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKV 778

Query: 930  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 989
            R R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD+I+NPHAIPSRMTI  L
Sbjct: 779  RTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHL 838

Query: 990  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 1049
            +EC++ KV A  G+EGDATPFTDVTVD IS+ L   GYQ RGFE MYNGHTG++L   IF
Sbjct: 839  VECLLSKVGAITGQEGDATPFTDVTVDQISQLLEDAGYQKRGFEIMYNGHTGKKLRTQIF 898

Query: 1050 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            LGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGGLRF
Sbjct: 899  LGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 942


>gi|46277271|gb|AAS86826.1| RNA polymerase II second largest subunit, partial [Antirrhinum majus]
          Length = 575

 Score = 1150 bits (2975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/575 (95%), Positives = 567/575 (98%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGL 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHR+P+MLV TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 61   WVGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK+D+ ALQQRESP+DGGWH+LVAKGFIEYIDTEEEETTMISMTINDL+ A+++P EA
Sbjct: 121  LIKKKDVQALQQRESPDDGGWHELVAKGFIEYIDTEEEETTMISMTINDLLSAKVNPTEA 180

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181  YSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR SGEDVIIG
Sbjct: 301  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCSGEDVIIG 360

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KTTPIS D+AQGQA+RYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 361  KTTPISPDDAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 420

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI+PDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL++MIFLGPTYYQRL
Sbjct: 481  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSSMIFLGPTYYQRL 540

Query: 1059 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 541  KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 575


>gi|120561267|gb|ABM27018.1| RNA polymerase II second largest subunit, partial [Entophlyctis
            confervae-glomeratae]
          Length = 886

 Score = 1150 bits (2974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/889 (62%), Positives = 693/889 (77%), Gaps = 29/889 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+M+ N  YVF K  P++Y Y  E+RS  ES ++ PST+F++ML+    KG 
Sbjct: 1    SEKVLIAQERMAFNTCYVFAKAPPSQYTYSCEIRSQNESGSKLPSTLFIKMLAPKGGKG- 59

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + GQ IR +LPYI+ +IPIIIVFRALG V D+DILEH+CYDF D QM+ELL+PS+EEAFV
Sbjct: 60   TLGQVIRTSLPYIKADIPIIIVFRALGIVTDRDILEHVCYDFNDHQMLELLKPSVEEAFV 119

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+++VALD+IG RG  +GV++DKRI+YA +IL KEMLPHV      +T+KA++FGY+IH
Sbjct: 120  IQDKEVALDFIGVRGTQMGVSKDKRIRYATDILTKEMLPHVSMESHHQTRKAFFFGYMIH 179

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL AL RR  DDRDH+G KRLDLAGPLL  LFR LFRKLT DV  Y +K V+ G + N
Sbjct: 180  RLLLAALERRPLDDRDHFGRKRLDLAGPLLSSLFRTLFRKLTTDVSRYTKKIVETGGEFN 239

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K+ TIT GL+YSLATGNWG Q      +AGVSQVLNR TYASTLSHLRRLN+PIG
Sbjct: 240  LAMALKSATITKGLQYSLATGNWGDQKKFMSAKAGVSQVLNRYTYASTLSHLRRLNTPIG 299

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM +I+VG+ A  +L +L E+G 
Sbjct: 300  RDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSHISVGNDAKIVLPYLGEFGM 359

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E  E+I P+++P+ATK+F+NG W+GIH +PE LVKTLR LRR  D++TE+ +VRD+  KE
Sbjct: 360  ETLEDIQPSMLPKATKVFLNGQWLGIHHEPETLVKTLRDLRRSADISTELSIVRDVSDKE 419

Query: 617  LRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYI 671
            +R+ TDYGR  RPL IV E   L I K   +A   R   E G     W DL++ G +EY+
Sbjct: 420  VRLQTDYGRIMRPLLIVKEDYHLAITKG--MARDLRPDVETGASALVWGDLLSSGAVEYL 477

Query: 672  DTEEEETTMISMTINDL------------------VQARLHPEEAYADTYTHCEIHPSLI 713
            DTEEEET MI+M + D+                  + ARL  + AYA  +THCEIHPS+I
Sbjct: 478  DTEEEETVMIAMDVEDVKRVRTERYGEVFVRPPQDITARLKSKAAYARRFTHCEIHPSMI 537

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TNYQ RMDT+A +L+YPQKPL TTRA
Sbjct: 538  LGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNYQLRMDTMANILFYPQKPLATTRA 597

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            M+ +HFR+LPAG NAIVAI+ YSGYNQEDS+IMNQSSIDRG FRS+++R Y D EKK+G 
Sbjct: 598  MQFMHFRELPAGQNAIVAISTYSGYNQEDSLIMNQSSIDRGLFRSMYYRVYMDTEKKIGM 657

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ- 891
            +  E   +PDR + + ++HGSY K+D DGL  PGTRVSGED+IIGKT PI +D ++ GQ 
Sbjct: 658  IDSETIEKPDREDCLRLKHGSYHKIDSDGLIAPGTRVSGEDIIIGKTVPIKEDSSEMGQR 717

Query: 892  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
             + +T+RD S  ++ +E G+VDQV+LTTN  G +FVKVRVRSVR+PQ+GDKF+SRHGQKG
Sbjct: 718  TAAHTKRDASTPMKSTENGIVDQVMLTTNEAGYKFVKVRVRSVRVPQMGDKFASRHGQKG 777

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            TVG+TY  EDMP++ EG++PD++VNPHAIPSRMTIG L+EC++ K++   G EGDA+PFT
Sbjct: 778  TVGITYRMEDMPFSGEGLSPDLVVNPHAIPSRMTIGHLVECLLSKLSTFTGIEGDASPFT 837

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            DVTVD ISK+L   GYQ RGFE +YNGHTGR+L A ++ GPTYYQRLKH
Sbjct: 838  DVTVDQISKSLESFGYQKRGFEVLYNGHTGRKLQAQVYFGPTYYQRLKH 886


>gi|6606127|gb|AAF19076.1|AF107804_1 DNA-dependent RNA polymerase II RPB140 [Pleospora tarda]
          Length = 942

 Score = 1150 bits (2974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/944 (58%), Positives = 702/944 (74%), Gaps = 50/944 (5%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VF+K+Q     ++AE+RS  E   R  S+  ++    + A  G
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQ-GPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGHG 59

Query: 258  S--SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA 315
                G +  ATLPYI+ ++P+ IVFRALG V+D++IL HI YD  DTQM+ELL+PS+EE 
Sbjct: 60   KRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEG 119

Query: 316  FVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 375
             V+Q+++ ALD+I KRGA  G T+D+R+K+A++I+Q+E LPH+   +  +T+KAY+FGY+
Sbjct: 120  SVVQDRETALDFIAKRGANSG-TKDRRLKFARDIMQREFLPHISQKEGQDTRKAYFFGYM 178

Query: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 435
            IHRLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+LF KLT+DV  Y+Q+CV+N +D
Sbjct: 179  IHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQD 238

Query: 436  VNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
             N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGVSQVLNR TYASTLSHLRR N+P
Sbjct: 239  FNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTP 298

Query: 495  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
            +GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL+LM Y++VGS A PI++F+ + 
Sbjct: 299  VGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDASPIIDFMTQR 358

Query: 555  GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
              +  EE      P ATK+FVNG WVG+H + + LV  ++ LRR   ++ E+ ++RDIR 
Sbjct: 359  NMQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTVVQELRRNGTLSYEMSLIRDIRD 418

Query: 615  KELRIYTDYGRCSRPLFIVE-------KQRLLIKK---RDIIALQQRESPEDG------- 657
            +E +I+TD GR  RPLF+VE       + +L+  K     + A QQ  S   G       
Sbjct: 419  REFKIFTDAGRVMRPLFVVENDFRRENRNQLVFTKAISNKLKAEQQETSTRQGWSQEEVE 478

Query: 658  ----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ---------------------AR 692
                GW  L+  G +EY+D EEEET MI+ +  DL +                      R
Sbjct: 479  NATYGWRGLIQDGVVEYLDAEEEETAMITFSPEDLEEWREMKMGLPAVERSTEGKDRLRR 538

Query: 693  LHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            L P  +     YTHCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TN+ 
Sbjct: 539  LKPAPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNFA 598

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RM+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIA Y GYNQEDSVIMNQSSI
Sbjct: 599  LRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSI 658

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRG FRSLF+R+Y ++EK++G  V E F +P R++T+ ++ G+YDKLDDDG+  PG RVS
Sbjct: 659  DRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVS 718

Query: 872  GEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 929
            G+D+IIGKT PI+ D  E   + + +T+RD S  LR +E G+VDQVL TTN +GLRFVKV
Sbjct: 719  GDDIIIGKTAPIATDAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKV 778

Query: 930  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 989
            R R+ ++PQIGDKF+SRHGQKGT+G+TY QEDMP++ EG+TPD+I+NPHAIPSRMTI  L
Sbjct: 779  RTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSKEGLTPDLIINPHAIPSRMTIAHL 838

Query: 990  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 1049
            +EC++ KV A  G+EGDATPFTDVTVD +S+ L   GYQ RGFE MYNGHTG+++   IF
Sbjct: 839  VECLLSKVGAITGQEGDATPFTDVTVDQVSQLLEDAGYQKRGFEIMYNGHTGKKMRTQIF 898

Query: 1050 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            LGPTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGGLRF
Sbjct: 899  LGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 942


>gi|6606121|gb|AAF19073.1|AF107801_1 DNA-dependent RNA polymerase II RPB140 [Stagonosporopsis
            cucurbitacearum]
          Length = 940

 Score = 1149 bits (2973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/942 (58%), Positives = 702/942 (74%), Gaps = 48/942 (5%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VF+K+Q     ++AE+RS  E   R  S+  ++    + A G 
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQ-GPIPWIAEIRSAVEKGTRLISSFNIKWAENSLASGK 59

Query: 258  S-SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
               G +  ATLPYI+ ++P+ IVFR+LG V+D++IL HI YD  DTQM+ELL+PS+EE  
Sbjct: 60   RMPGPFAYATLPYIKADVPMAIVFRSLGIVSDEEILGHIVYDRTDTQMLELLKPSIEEGS 119

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            V+Q+++ ALD+I +RGAT G T+D+R+K+A++I+Q+E LPH+   +  +T+KAY+FGY+I
Sbjct: 120  VVQDRESALDFIARRGATQG-TKDRRLKFARDIMQREFLPHISQREGQDTRKAYFFGYMI 178

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            HR+L C LGRR EDDRDH+G KRLDLAGPL+  LFR+LF KLT+DV  Y+Q+CV+N  D 
Sbjct: 179  HRMLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNSDF 238

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            N+Q A+KA  IT+GLKYSLATGNWG Q  AA  +AGVSQVLNR TYASTLSHLRR N+P+
Sbjct: 239  NVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPV 298

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GR+GKLAKPRQLHNS WG++CPAETPEGQACGLVKNL+LM Y++VGS A PI +F+ +  
Sbjct: 299  GRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDATPIADFMGKRN 358

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             +  EE      P ATK+FVNG WVG+H + + LV T++ LRR   ++ E+ ++RDIR +
Sbjct: 359  MQLLEEYDQNQNPDATKVFVNGVWVGVHNNAQQLVSTVQELRRNGTLSYEMSLIRDIRDR 418

Query: 616  ELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG----------- 657
            E +I+TD GR  RPLF+V+       +  L+  +     L Q +  +             
Sbjct: 419  EFKIFTDAGRVMRPLFVVQNDVTKDDRNHLVFNQDHYNKLVQEQQAQATAGIGEEEKTAL 478

Query: 658  --GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ---------------------ARLH 694
              GW  L+  G IEY+D EEEET MI M+  DL +                     AR+ 
Sbjct: 479  TYGWKGLIQDGVIEYLDAEEEETAMIVMSPEDLGEWRDMKQGIPQDARNPQGKDRLARIK 538

Query: 695  PE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
            P+ +     YTHCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TNY  R
Sbjct: 539  PKPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNYALR 598

Query: 754  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
            M+T+  VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 599  METMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDR 658

Query: 814  GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
            G FRSLF+R+Y ++EK++G  V E F +P R++T+ ++ G+YDKLDDDG+  PG RVSG+
Sbjct: 659  GLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGD 718

Query: 874  DVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            D+IIGKT PI+ D  E   + S +T+RD S  LR +E G+VDQVL TTN +GLRFVKVR 
Sbjct: 719  DIIIGKTAPIAADAQEMGQKTSLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRT 778

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+TPD+++NPHAIPSRMTI  L+E
Sbjct: 779  RTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTRDGVTPDLVINPHAIPSRMTIAHLVE 838

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            C++ KV A  G+EGDATPFTDVTVD IS+ L   GYQ RGFE MYNGHTG+++   IFLG
Sbjct: 839  CLLSKVGAITGREGDATPFTDVTVDQISELLEDAGYQKRGFEIMYNGHTGKKMRTQIFLG 898

Query: 1052 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            PTYYQRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGGLRF
Sbjct: 899  PTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 940


>gi|345319345|ref|XP_001521110.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2, partial
           [Ornithorhynchus anatinus]
          Length = 951

 Score = 1148 bits (2970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/851 (66%), Positives = 677/851 (79%), Gaps = 18/851 (2%)

Query: 6   YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
           YD +E  Q +E+D+E   ++ QE  W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2   YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 64  SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
           +  I+++ E+QH  G+  +     Y + F QIYLSKP   E DG  + + P  ARLRNLT
Sbjct: 62  APPIDLQAEAQHATGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119

Query: 124 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
           YSAPLYVD+TK VIK   +GEE  +TQ   K FIGK+PIMLRS+YC L   +++DL EL 
Sbjct: 120 YSAPLYVDITKTVIK---EGEEQLQTQH-QKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175

Query: 184 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
           ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+  +KYAY  E RS  E+ +RP ST
Sbjct: 176 ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234

Query: 244 MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
           ++V ML+R    AK  + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235 IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294

Query: 302 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
            +MME+++PSL+EAFVIQ Q VAL++IG RGA  GVT++KRIKYAKE+LQKEMLPHVG  
Sbjct: 295 PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354

Query: 362 DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
           DFCETKKAY+ GY++HRLLL ALGRR  DDRDHYGNKRLDLAGPLL  LFR +F+ L ++
Sbjct: 355 DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414

Query: 422 VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
           VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q  A   RAGVSQVLNRLT
Sbjct: 415 VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474

Query: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
           +ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475 FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534

Query: 541 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
           GS   PILEFLEEW  EN EEISPA I  ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535 GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594

Query: 601 D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
           D + +EV ++RDIR +E+RIYTD GR  RPL IVEKQ+LL+KKR I  L++RE   +  W
Sbjct: 595 DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSW 653

Query: 660 HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
            DLVA G +EYIDT EEET M++MT +DL +  +    AY  TYTHCEIHPS+ILGVCAS
Sbjct: 654 QDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV----AYCSTYTHCEIHPSMILGVCAS 709

Query: 720 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
           IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769

Query: 780 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
           R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFR +F+RSY+++E K G   +E F
Sbjct: 770 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRCVFYRSYKEQESKKGFDQEEVF 829

Query: 840 GRPDRSNTMGM 850
            +P R    G+
Sbjct: 830 EKPTRETCQGI 840


>gi|120561265|gb|ABM27017.1| RNA polymerase II second largest subunit, partial [Coelomomyces
            stegomyiae]
          Length = 862

 Score = 1146 bits (2965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/870 (62%), Positives = 671/870 (77%), Gaps = 30/870 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKV+IAQE+ +TN V+VFKK  P+   Y AE+RS AE+  +  S+  V+M         
Sbjct: 1    SEKVIIAQERTATNTVFVFKKALPSPVEYQAEIRSQAETGPKTMSSFIVKM--------- 51

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            S   +I ATLPYI  +IPI+IVFRALG + D+DILE ICYDF D QM+E+L+P ++EAF 
Sbjct: 52   SRQHHITATLPYINQDIPIVIVFRALGLLTDRDILERICYDFNDHQMLEMLKPCIDEAFQ 111

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            +  Q++ALD+IGKRG  VG+TR++RI+YA ++L++E+LPH+GT   CET+K+Y+ GY+I+
Sbjct: 112  VNTQELALDHIGKRGKNVGLTRERRIRYACDLLERELLPHIGTTPGCETRKSYFIGYMIN 171

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLL  ALGRR  DDRDH+G KRLDLAGPLL  LFR  F+KLT+DV  Y   C++  +  N
Sbjct: 172  RLLSTALGRREVDDRDHFGKKRLDLAGPLLASLFRTFFQKLTKDVGRYFTNCLERSRPFN 231

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  AI + TIT+GL+Y+LATGNWG Q     TRAGVSQVLNR T+ASTLSHLRRLN+PIG
Sbjct: 232  LNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTPIG 291

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            REGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGSA+ PI EFL EW T
Sbjct: 292  REGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSIISVGSASEPIHEFLSEWTT 351

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            EN EEISP+ I   TK+FVNG W+GIHR+P+ LVKTL+ LRR  D+++EV VV DIR  E
Sbjct: 352  ENLEEISPSTIGPNTKVFVNGAWIGIHREPDSLVKTLKTLRRATDIDSEVSVVHDIRENE 411

Query: 617  LRIYTDYGRCSRPLFIV-EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            LRIYTD GR  RPLF+V E Q+L++KK  I+ L + +     GW  L+  G +EY+DTEE
Sbjct: 412  LRIYTDPGRICRPLFVVNENQQLVLKKEHILKLSEEDEDAIWGWEKLLINGIVEYLDTEE 471

Query: 676  EETTMISMTINDLVQAR------------------LHPEEAYADTYTHCEIHPSLILGVC 717
            EET MISM+ +DL +AR                        Y  T+THCEIHP++ILG+C
Sbjct: 472  EETVMISMSPDDLAEARGALIFDKSLDRDRTARLKARKPGDYCKTWTHCEIHPAMILGIC 531

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+Q RMDTLA +LYYPQKPLVTTR M++L
Sbjct: 532  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQLRMDTLANILYYPQKPLVTTRNMQYL 591

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
             FR+LPAG NAIVAIA YSGYNQEDS+IM+QS+IDRG FRS+++RSY D EKK G    E
Sbjct: 592  RFRELPAGQNAIVAIAAYSGYNQEDSLIMSQSAIDRGLFRSIYYRSYVDAEKKTGFTQLE 651

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRYT 896
            +F RP R  T+ +R GSY+KL+DDG   PGTRV+G+D+IIGKT P+  D ++ G  +  T
Sbjct: 652  EFERPTRETTLKLRQGSYEKLEDDGFVAPGTRVNGDDIIIGKTAPLPMDHSELGTRTTQT 711

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            ++D S  L+ SE G+VD V++TTN DG +FVK+RVRS R+PQIGDKF+SRHGQKGTVGMT
Sbjct: 712  KKDVSTGLKSSENGIVDHVMVTTNGDGYKFVKIRVRSTRVPQIGDKFASRHGQKGTVGMT 771

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y QEDMP+T EG+TPD+I+NPHAIPSRMTIG L+EC++GKV++  G EGDATPFTDVTV 
Sbjct: 772  YRQEDMPFTAEGLTPDLIINPHAIPSRMTIGHLVECLLGKVSSLTGSEGDATPFTDVTVQ 831

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
             IS  L +CGYQ RGFE MYNGHTG++L+A
Sbjct: 832  QISDLLRECGYQQRGFEVMYNGHTGKKLSA 861


>gi|120561269|gb|ABM27019.1| RNA polymerase II second largest subunit, partial [Chytriomyces
            hyalinus]
          Length = 883

 Score = 1145 bits (2962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/889 (61%), Positives = 688/889 (77%), Gaps = 32/889 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLI QE+M+TNHV+VF K+QP  Y Y  E+RS  E  ++  ST+F++M+    A  G
Sbjct: 1    SEKVLIGQERMATNHVFVFAKKQPATYLYSVEIRSQGEKASKLASTLFMKMM----APKG 56

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              GQ I+ +LPYI+ ++PI++VFRALG ++DK+I+E ICYDF DT M+ELL+P +EEAF 
Sbjct: 57   DMGQVIKTSLPYIKQDVPIVVVFRALGIISDKEIMEKICYDFDDTPMLELLKPCIEEAFP 116

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ ++VALDYIG+RG +VG T++KRIKYA +ILQKEMLPHVGT    ET+KAY+FGY+IH
Sbjct: 117  IQTREVALDYIGRRGQSVGATKEKRIKYAMDILQKEMLPHVGTKAHQETRKAYFFGYMIH 176

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL  + RR  DDRDH+G KRLDLAGPL+  LFR+LFRKLT+D+   +QK V++ K  N
Sbjct: 177  RLLLATMQRRDFDDRDHFGKKRLDLAGPLMTQLFRILFRKLTKDITRQLQKHVESNKAFN 236

Query: 438  LQF---AIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
            +Q    ++ A  + +GLKYSLATGNWG Q+ A+  RAGVSQVLNR T+ASTLSHLRRLNS
Sbjct: 237  IQSLERSLDANVLKNGLKYSLATGNWGDQSKASQARAGVSQVLNRYTFASTLSHLRRLNS 296

Query: 494  PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 553
            P  R+GKLAKPRQLHN+QWGM+CPAETPEGQACGLVKN++LM  ITVG+++ P +E LEE
Sbjct: 297  PTDRDGKLAKPRQLHNTQWGMVCPAETPEGQACGLVKNMSLMAIITVGTSSGPFIEHLEE 356

Query: 554  WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIR 613
               E  EE+ P+V+  ATK+F+NG W+G+HR+PE LV+ LR  RR  +V+ EV +V D+ 
Sbjct: 357  LSMETLEEVGPSVLKDATKVFLNGMWLGVHREPENLVENLRSTRRNCEVSPEVSIVHDVT 416

Query: 614  LKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYI 671
              ELR+YTD GR SRPLFIV+K  Q+LLI++  ++AL+  E+  D  + DL+++G +EYI
Sbjct: 417  ECELRLYTDAGRISRPLFIVDKESQKLLIQRAHVLALRDPET--DATFVDLLSEGVVEYI 474

Query: 672  DTEEEETTMISMTINDLVQARLH----PE--------------EAYADTYTHCEIHPSLI 713
            DTEEEET MI+M+ +DL  AR      PE               A    +THCEIHPS+I
Sbjct: 475  DTEEEETAMIAMSPDDLESARKAARGIPEIKKERNRTERSQTISALTLNWTHCEIHPSMI 534

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LG+CASIIPFPDHNQSPRN YQSAMGKQAMGI++T++Q+RMD    +L+YPQKPL  TR+
Sbjct: 535  LGICASIIPFPDHNQSPRNCYQSAMGKQAMGIFLTSFQYRMDQTMNILFYPQKPLACTRS 594

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            ME+L FR+LPAG NAIV I CYSGYNQEDS+IMNQSSID+G FRSL+F+ Y D EKK G 
Sbjct: 595  MEYLRFRELPAGQNAIVCICCYSGYNQEDSLIMNQSSIDKGLFRSLYFKVYIDTEKKEGM 654

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ- 891
               E   +P R NT+ MR GSYDKLD DGL  PG RVSG+D++IGKT P+ +D E  GQ 
Sbjct: 655  TQLETIEKPMRENTLRMRQGSYDKLDVDGLVSPGVRVSGDDILIGKTVPLPKDSEEMGQR 714

Query: 892  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
             S +T+RD S  L+ +E G++DQV++TTNADG +FVKVR+RS+R+PQIGDKF+SRHGQKG
Sbjct: 715  TSGHTKRDDSTPLKSTEAGIIDQVMVTTNADGYKFVKVRMRSIRVPQIGDKFASRHGQKG 774

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T G+TY  EDMP+T +GITPDII+NPHAIPSRMTIG L+EC++GKVA H G EGDATPFT
Sbjct: 775  TCGITYRNEDMPFTRDGITPDIIINPHAIPSRMTIGHLVECLLGKVATHTGHEGDATPFT 834

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            DV V+ IS+ L   G+Q RGFE ++NGHTG++L A ++ GPTYYQRLKH
Sbjct: 835  DVNVEEISRELEAFGFQKRGFEVLFNGHTGKKLNAQVYTGPTYYQRLKH 883


>gi|120561271|gb|ABM27020.1| RNA polymerase II second largest subunit, partial [Chytriomyces
            hyalinus]
          Length = 883

 Score = 1145 bits (2962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/889 (61%), Positives = 688/889 (77%), Gaps = 32/889 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLI QE+M+TNHV+VF K+QP  Y Y  E+RS  E  ++  ST+F++M+    A  G
Sbjct: 1    SEKVLIGQERMATNHVFVFAKKQPATYLYSVEIRSQGEKASKLASTLFMKMM----APKG 56

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              GQ I+ +LPYI+ ++PI++VFRALG ++DK+I+E ICYDF DT M+ELL+P +EEAF 
Sbjct: 57   DMGQVIKTSLPYIKQDVPIVVVFRALGIISDKEIMEKICYDFDDTPMLELLKPCIEEAFP 116

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ ++VALDYIG+RG +VG T++KRIKYA +ILQKEMLPHVGT    ET+KAY+FGY+IH
Sbjct: 117  IQTREVALDYIGRRGQSVGATKEKRIKYAMDILQKEMLPHVGTKAHQETRKAYFFGYMIH 176

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL  + RR  DDRDH+G KRLDLAGPL+  LFR+LFRKLT+D+   +QK V++ K  N
Sbjct: 177  RLLLATMQRRDFDDRDHFGKKRLDLAGPLMTQLFRILFRKLTKDITRQLQKHVESNKAFN 236

Query: 438  LQF---AIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
            +Q    ++ A  + +GLKYSLATGNWG Q+ A+  RAGVSQVLNR T+ASTLSHLRRLNS
Sbjct: 237  IQSLERSLDANVLKNGLKYSLATGNWGDQSKASQARAGVSQVLNRYTFASTLSHLRRLNS 296

Query: 494  PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 553
            P  R+GKLAKPRQLHN+QWGM+CPAETPEGQACGLVKN++LM  ITVG+++ P +E LEE
Sbjct: 297  PTDRDGKLAKPRQLHNTQWGMVCPAETPEGQACGLVKNMSLMAIITVGTSSGPFIEHLEE 356

Query: 554  WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIR 613
               E  EE+ P+V+  ATK+F+NG W+G+HR+PE LV+ LR  RR  +V+ EV +V D+ 
Sbjct: 357  LSMETLEEVGPSVLKDATKVFLNGMWLGVHREPENLVENLRSTRRNCEVSPEVSIVHDVT 416

Query: 614  LKELRIYTDYGRCSRPLFIVEK--QRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYI 671
              ELR+YTD GR SRPLFIV+K  Q+LLI++  ++AL+  E+  D  + DL+++G +EYI
Sbjct: 417  ECELRLYTDAGRISRPLFIVDKESQKLLIQRAHVLALRDPET--DATFVDLLSEGVVEYI 474

Query: 672  DTEEEETTMISMTINDLVQARLH----PE--------------EAYADTYTHCEIHPSLI 713
            DTEEEET MI+M+ +DL  AR      PE               A    +THCEIHPS+I
Sbjct: 475  DTEEEETAMIAMSPDDLESARKAARGIPEIKKERNRTERSQTVSALTLNWTHCEIHPSMI 534

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LG+CASIIPFPDHNQSPRN YQSAMGKQAMGI++T++Q+RMD    +L+YPQKPL  TR+
Sbjct: 535  LGICASIIPFPDHNQSPRNCYQSAMGKQAMGIFLTSFQYRMDQTMNILFYPQKPLACTRS 594

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            ME+L FR+LPAG NAIV I CYSGYNQEDS+IMNQSSID+G FRSL+F+ Y D EKK G 
Sbjct: 595  MEYLRFRELPAGQNAIVCICCYSGYNQEDSLIMNQSSIDKGLFRSLYFKVYIDTEKKEGM 654

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ- 891
               E   +P R NT+ MR GSYDKLD DGL  PG RVSG+D++IGKT P+ +D E  GQ 
Sbjct: 655  TQLETIEKPMRENTLRMRQGSYDKLDVDGLVSPGVRVSGDDILIGKTVPLPKDSEEMGQR 714

Query: 892  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
             S +T+RD S  L+ +E G++DQV++TTNADG +FVKVR+RS+R+PQIGDKF+SRHGQKG
Sbjct: 715  TSGHTKRDDSTPLKSTEAGIIDQVMVTTNADGYKFVKVRMRSIRVPQIGDKFASRHGQKG 774

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T G+TY  EDMP+T +GITPDII+NPHAIPSRMTIG L+EC++GKVA H G EGDATPFT
Sbjct: 775  TCGITYRNEDMPFTRDGITPDIIINPHAIPSRMTIGHLVECLLGKVATHTGHEGDATPFT 834

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            DV V+ IS+ L   G+Q RGFE ++NGHTG++L A ++ GPTYYQRLKH
Sbjct: 835  DVNVEEISRELEAFGFQKRGFEVLFNGHTGKKLNAQVYTGPTYYQRLKH 883


>gi|46277257|gb|AAS86819.1| RNA polymerase II second largest subunit, partial [Dioscorea
            sansibarensis]
          Length = 572

 Score = 1144 bits (2960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/573 (93%), Positives = 562/573 (98%), Gaps = 1/573 (0%)

Query: 520  TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 579
            TPEGQACGLVKNLALMVYITVGSAA P+LEFLEEW TENFEEISPAVIPQATKIFVNGCW
Sbjct: 1    TPEGQACGLVKNLALMVYITVGSAANPLLEFLEEWSTENFEEISPAVIPQATKIFVNGCW 60

Query: 580  VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 639
            VGIHR+P++LVKTLR+LRR++D+NTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLL
Sbjct: 61   VGIHRNPDLLVKTLRKLRRQIDINTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLL 120

Query: 640  IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 699
            IKK+DI ALQ+RE+ E+G WHDLVAKGFIEYIDTEEEETTMISMTINDL+ AR +PEEAY
Sbjct: 121  IKKKDIRALQERETSEEG-WHDLVAKGFIEYIDTEEEETTMISMTINDLINARQNPEEAY 179

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
            +DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAY
Sbjct: 180  SDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAY 239

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL
Sbjct: 240  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 299

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            FFRSYRDEEKKMGTLVKEDFG+P+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK
Sbjct: 300  FFRSYRDEEKKMGTLVKEDFGKPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 359

Query: 880  TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            T+PI QDE+QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQI
Sbjct: 360  TSPIPQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQI 419

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA
Sbjct: 420  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 479

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
            HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLK
Sbjct: 480  HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLK 539

Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR
Sbjct: 540  HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 572


>gi|88601072|gb|ABD46532.1| RNA polymerase II second largest subunit, partial [Vuilleminia
            comedens]
          Length = 880

 Score = 1144 bits (2958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/881 (62%), Positives = 680/881 (77%), Gaps = 34/881 (3%)

Query: 208  MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS-GQYIRAT 266
            M+TNHVYVF K QP+  +++AE+RS  E   +  S   V++ +++S +  S+ G  I+AT
Sbjct: 1    MATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYTKSSDRASSNPGGQIKAT 60

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            +PYI+ +IPI I FRALG ++D+DILEHICYD QDTQM+E+L+P +++   +Q+++V LD
Sbjct: 61   IPYIKVDIPIWIXFRALGVISDRDILEHICYDMQDTQMLEMLKPCIDDGIFVQDREVCLD 120

Query: 327  YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
            YIG RG T G++R++R+ YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL R
Sbjct: 121  YIGNRGTTTGLSRERRLXYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALER 180

Query: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
            R  DDRDH+G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ N+  A+K  T
Sbjct: 181  RELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETSKEFNISLAVKHNT 240

Query: 447  ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
            IT+GLKYSLATGNWG Q  +  ++AG SQVLNR TYASTLSHLRR N+P+GREGK+AKPR
Sbjct: 241  ITNGLKYSLATGNWGDQKKSMASKAGXSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 300

Query: 506  QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
            QLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +
Sbjct: 301  QLHNTHWGMVCPAETPEGQACGLVKNLALMSTISVGSYSAPVIEFLEEWGLESLEENAHS 360

Query: 566  VIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGR 625
              P  TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELRI TD GR
Sbjct: 361  QTP-CTKVFVNGVWMGVHRDPANLVKTIKQLRRKDDISPEVSVVRDIRERELRIATDAGR 419

Query: 626  CSRPLFIVEKQRLLIKKRDIIALQ----------QRESPEDGGWHDLVAKGFIEYIDTEE 675
              RPLFIV  + L +KK+ I  L             +  +D  +  LV +G IEY+D EE
Sbjct: 420  VCRPLFIVNNKELALKKKHIDLLNVGKHYVTTADGVQEEQDYKFDSLVKEGVIEYLDAEE 479

Query: 676  EETTMISMTINDLVQAR-----LHPEE--------------AYADTYTHCEIHPSLILGV 716
            EET MI MT  +L +AR       P++                A T+THCEIHPS+ILG+
Sbjct: 480  EETVMICMTPTELDRARRIELGAKPDDEDEEYDPAARIETATLAHTWTHCEIHPSMILGI 539

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+
Sbjct: 540  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEY 599

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    
Sbjct: 600  LKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDVEKKSGVQEL 659

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 894
            E F +P R  T+ M+HG+YDK++DDGL  PGT V+GED+IIGKT PI  D E  GQ +R 
Sbjct: 660  EKFMKPTRDTTLRMKHGTYDKIEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRG 719

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            +TRRD S  L+ +E G VDQVLLTTNADG +FVKVR+RS RIPQIGDKF+SRHGQKGTVG
Sbjct: 720  HTRRDVSTPLKSTEQGTVDQVLLTTNADGQKFVKVRIRSTRIPQIGDKFASRHGQKGTVG 779

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G+EGDATPFT++T
Sbjct: 780  ITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLLGQEGDATPFTELT 839

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            V+++SK L   GYQ RG E MY+GHTG++L A I+LGPTYY
Sbjct: 840  VESVSKYLRDRGYQSRGLEIMYHGHTGKKLNAQIYLGPTYY 880


>gi|45545335|gb|AAS67515.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Mycosphaerella punctiformis]
          Length = 935

 Score = 1143 bits (2957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/939 (58%), Positives = 706/939 (75%), Gaps = 47/939 (5%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK+  N    +AE+RS  E   R  S+  V++ ++ +    
Sbjct: 1    SEKVLIAQERSAANIVQVFKKKGTNT-PVMAELRSAVERGTRLISSTTVKLYNQ-AVNAN 58

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            + GQ I+ +LPYI+T+IPI I+FRALG V+D+DIL HI  + +DTQM+E+L+P LEEAFV
Sbjct: 59   NPGQTIKGSLPYIKTDIPIAIIFRALGVVSDEDILNHIV-NKEDTQMLEMLKPCLEEAFV 117

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            +Q++  ALD+IG+RG   G T+D+RI+YA++I+QKE LPH+   +  ETKKA++ GY+++
Sbjct: 118  VQDRDNALDFIGRRGQQTG-TKDRRIRYARDIMQKEFLPHISQEEGSETKKAFFLGYMVN 176

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            R+L CALGR  EDDRDH+G KRLDLAGPL+  +FR+ F +L ++++ Y+ +CV+ G+D N
Sbjct: 177  RMLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVFRLKFVQLVKEMKMYLHRCVEGGRDFN 236

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            +  AIK   +TSGL+Y LATGNWG Q  A+  +AGVSQVLNR TYASTLSHLRR N+PIG
Sbjct: 237  ITLAIKTNILTSGLRYCLATGNWGDQKKASSAKAGVSQVLNRYTYASTLSHLRRTNTPIG 296

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+TVG+   P+ +F+ + G 
Sbjct: 297  RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGTPGEPLTDFMRQRGM 356

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            +  EE  P + P++TK+F+NG WVG+H++   L +TLR LRR+  ++ EV ++RD+R +E
Sbjct: 357  DLLEEYDPVLEPKSTKVFINGTWVGVHKNAGQLTETLRSLRRKGLLSFEVTIIRDVRERE 416

Query: 617  LRIYTDYGRCSRPLFIV-------EKQRLLIKKRDIIALQQRE---------SPEDG--- 657
            +R++TD GR  RPLF+V       E+  L++++  +  LQQ +         S ED    
Sbjct: 417  IRVFTDAGRVCRPLFVVDNKPDAAERGSLVLRQDQVAKLQQDQENAASLRGISEEDKALH 476

Query: 658  --GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-LHPEEAYAD------------- 701
              GW  LV +G +EY+D EEEET MI MT  DL + R L     Y D             
Sbjct: 477  SYGWMGLVNEGVVEYLDAEEEETAMIIMTPEDLDEHRALRSGAEYDDPKSDPHRRIKPKP 536

Query: 702  -----TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 756
                 T+THCEIHP++ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TNY  RMDT
Sbjct: 537  NMQVHTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVTLTNYNVRMDT 596

Query: 757  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 816
            +A VLYYPQKPL TTR+ME L FR LPAG NAIVAIA YSGYNQEDSVIMNQSSIDRG F
Sbjct: 597  MANVLYYPQKPLATTRSMEFLKFRDLPAGQNAIVAIASYSGYNQEDSVIMNQSSIDRGLF 656

Query: 817  RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 876
            RSLF+R+Y D+EK++G  V E F RP+R+ TM M+HGSYDKLDDDG+  PG RVSG D++
Sbjct: 657  RSLFYRAYMDQEKRVGMSVVESFERPERAATMKMKHGSYDKLDDDGIVSPGCRVSGGDML 716

Query: 877  IGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 934
            IGKT P++ D E  G  ++   +RD S  LR +E G+VDQVLLTTN +GLRF KVR R  
Sbjct: 717  IGKTAPMAPDAEELGMRTKMQVKRDVSTPLRSTENGVVDQVLLTTNTEGLRFAKVRTRVT 776

Query: 935  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 994
            ++PQIGDKF+SRHGQKGT+G+TY QEDMP++ +G+ PDII+NPHAIPSRMTI  LIEC++
Sbjct: 777  KVPQIGDKFASRHGQKGTIGITYRQEDMPFSADGLVPDIIINPHAIPSRMTIAHLIECLL 836

Query: 995  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1054
             KV A  G+EGDATPFTDVTV +IS  L   G+Q RGFE MYNGHTG++L A +FLGPTY
Sbjct: 837  SKVGALQGQEGDATPFTDVTVTSISMILADHGFQQRGFEVMYNGHTGKKLNAQVFLGPTY 896

Query: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            YQRL+HMVDDKIH+R RGP+Q+LTRQP EGR+RDGGLRF
Sbjct: 897  YQRLRHMVDDKIHARARGPLQVLTRQPVEGRARDGGLRF 935


>gi|6606129|gb|AAF19077.1|AF107805_1 DNA-dependent RNA polymerase II RPB140 [Preussia minima]
          Length = 937

 Score = 1143 bits (2957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/939 (58%), Positives = 698/939 (74%), Gaps = 45/939 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VF+K+Q     + AE+RS  E   R  S+  ++    +     
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQ-GPIPWTAEIRSAVEKGTRLISSFNIKWTDNSMIVKR 59

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              G +  A LPYI+ ++P+ IVFRALG V+D+DIL HI YD  DTQM+ELL+PS+EE  +
Sbjct: 60   QPGPFAYAVLPYIKADVPMAIVFRALGIVSDEDILNHIVYDRNDTQMLELLKPSIEEGAM 119

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ ++ ALD+I +RG   G T+DKR+K+A+EI+Q+E LPH+   +  +T+KA++FGY+IH
Sbjct: 120  IQERETALDWIARRGNQTG-TKDKRLKFAREIMQREFLPHISQKEGQDTRKAFFFGYMIH 178

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLL C LGRR EDDRDH+G KRLDLAGPL+  LFR+LF KLT+D+  Y++KCVD  ++ N
Sbjct: 179  RLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDMFNYLRKCVDAEQEFN 238

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
               A+KA  +T+GLKYSLATGNWG Q  AA  +AGVSQVLNR TYASTLSHLRR N+P+G
Sbjct: 239  ATLALKASIVTNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVG 298

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VG+ + PI++F+ +   
Sbjct: 299  RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGNESAPIIDFMSQRNM 358

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            +  EE  P   P ATK+FVNG WVG+H +P  LV  ++ LRR   ++ E+ ++RDIR +E
Sbjct: 359  DLLEEYDPIQNPTATKVFVNGTWVGVHSNPSQLVSVVQELRRNGTLSYEMSLIRDIRDRE 418

Query: 617  LRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQ-QRESPEDG----------- 657
             +I+TD GR  RPLF+VE       +  L++ K  I  LQ  +E    G           
Sbjct: 419  FKIFTDAGRVMRPLFVVETNYNKPNRGSLVLTKAHIEKLQADKEIDTSGMNDEDTAERKY 478

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ--------------------ARLHPE- 696
            GW  L+  G +EY+D EEEE  MI M+  DL +                     R+ P+ 
Sbjct: 479  GWFGLIHDGVVEYLDAEEEEGAMIIMSPEDLDEHRDLMQGTQTQEDKEDNDRHKRIKPKP 538

Query: 697  EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 756
                 TYTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TNY  RM+T
Sbjct: 539  NPSIKTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNYALRMET 598

Query: 757  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 816
            +  VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG F
Sbjct: 599  MMNVLYYPQKPLATTRSMEYLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLF 658

Query: 817  RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 876
            RSLF+R+Y ++EK++G  V E F +P R +T+ ++ G+YDKLDDDG+  PG RVSG+D+I
Sbjct: 659  RSLFYRAYTEQEKRIGVNVLEQFEKPTRQDTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 718

Query: 877  IGKTTPISQDEAQ-GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 934
            IGKT PI  D  + GQ ++ +T+RD S  LR +E G+VDQVL TTN +GLRFVKVR R+ 
Sbjct: 719  IGKTAPIPGDAQELGQKTQNHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 778

Query: 935  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 994
            ++PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+TPD+I+NPHAIPSRMTI  L+EC++
Sbjct: 779  KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGLTPDLIINPHAIPSRMTIAHLVECLL 838

Query: 995  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1054
             KV +  G EGDATPFTDVTV+++SK L + GYQ RGFE MYNGHTG++L A +FLGPTY
Sbjct: 839  SKVGSLKGAEGDATPFTDVTVESVSKLLVEHGYQQRGFEVMYNGHTGKKLRAQVFLGPTY 898

Query: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            YQRL+HMVDDKIH+R RGP+QILTRQP EGR+RDGGLRF
Sbjct: 899  YQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 937


>gi|45545355|gb|AAS67525.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Ustilago maydis]
          Length = 887

 Score = 1142 bits (2953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/890 (61%), Positives = 688/890 (77%), Gaps = 30/890 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+M+ NHVYVF K  P    ++AE+RS  E   +  STM V++ SR   K  
Sbjct: 1    SEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRNKEK-- 58

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            ++   IRATLPYIR +IPI+IVFRALG V D+++L+HICYDF DT M+E+L+P +EEAFV
Sbjct: 59   TANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKPCIEEAFV 118

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ++ VALD+IG+RG T G++R KR  YA+EILQKEMLPH+ T +   TKKAY+FGY+IH
Sbjct: 119  IQDRDVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTSEGSNTKKAYFFGYMIH 178

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLL AL RR  DDRDH+G KR+DL GPL+  LFRMLFRK+TRDV  ++QKCV+  ++ +
Sbjct: 179  RLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVEEHREFH 238

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            +Q A+K+ TIT+GL+YSLATGNWG Q  A   +AGVSQVLNR  +ASTLSHLRR N+PIG
Sbjct: 239  IQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRRTNTPIG 298

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  +TVG+ + PI+EFLEE+G 
Sbjct: 299  RDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEFLEEFGL 358

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            ++  ++  A   +ATKIFVNG W+G H DP  LV TLR LRR+ D++ EV VVRDIR +E
Sbjct: 359  DSLVDMQLAH-AKATKIFVNGVWMGTHDDPGQLVDTLRDLRRKDDISHEVSVVRDIRERE 417

Query: 617  LRIYTDYGRCSRPLFIVEKQ--RLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYID 672
            LRIYTD  R  RP+FIV      LLIKKR +  + Q   E+ E+  W  LV +G IEY+D
Sbjct: 418  LRIYTDASRVLRPVFIVNPHDMSLLIKKRHVEMIGQPIPETGEEFRWTHLVQEGVIEYLD 477

Query: 673  TEEEETTMISMTINDLVQAR----------LHPEEAYA----------DTYTHCEIHPSL 712
             EEEE+ +I M+  DL Q+R          L+  +  A          DT+THCEIHP++
Sbjct: 478  AEEEESVLICMSTTDLEQSREYKARNGQINLNSADPSARLKSVHTIAPDTWTHCEIHPAM 537

Query: 713  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 772
            +LG+CASI+PFPDHNQSPRN YQSAMGKQA+GI ++N Q R D++A+VL YPQKPL TTR
Sbjct: 538  VLGICASIVPFPDHNQSPRNVYQSAMGKQAIGIPISNIQSRADSMAHVLLYPQKPLGTTR 597

Query: 773  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 832
            +MEHL FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++R Y  EEKK+G
Sbjct: 598  SMEHLRFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSMYYRGYMAEEKKVG 657

Query: 833  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ 891
             +  E+F +P R  T+ M+HG+YDK+D DGL  PGTRVSG+DVIIGKT P+  D E  G 
Sbjct: 658  VMQLEEFEKPHRDTTIRMKHGTYDKIDADGLCAPGTRVSGDDVIIGKTAPLPPDSEELGM 717

Query: 892  ASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
             S+ +T++D S+SL+ +E G++DQVL+TTN+ G +FVKVRVRS R+PQ GDKF+SRHGQK
Sbjct: 718  RSKLHTKKDASVSLKSTENGIIDQVLVTTNSHGNKFVKVRVRSTRVPQTGDKFASRHGQK 777

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GT+G+TY QEDMP++ EG+TPDII+NPHAIPSRMTIG L+EC++ KVAA  G+EGDATPF
Sbjct: 778  GTIGITYRQEDMPFSAEGVTPDIIINPHAIPSRMTIGHLVECLLSKVAALSGQEGDATPF 837

Query: 1011 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            T++TV+ +S  L   GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 838  TELTVEAVSSILRGLGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 887


>gi|120407526|gb|AAY82000.2| RNA polymerase II second largest subunit [Coleochaete scutata]
          Length = 702

 Score = 1140 bits (2949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/679 (80%), Positives = 591/679 (87%), Gaps = 4/679 (0%)

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEGQACGLVKNLALM YI+VGSAA PILEFLEEW TEN EEI P  IP  TKIFVNG
Sbjct: 1    AETPEGQACGLVKNLALMAYISVGSAAAPILEFLEEWTTENLEEIHPNDIPNTTKIFVNG 60

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 637
             WVGIHRDP+MLVKTL++LRR+VDVNTEVGVVRDIRLKELR+YTDYGRC RPLF V+ QR
Sbjct: 61   VWVGIHRDPDMLVKTLQKLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCCRPLFXVDNQR 120

Query: 638  LLIKKRDIIALQQRESP-EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE 696
            L+IKK  I  L     P ED GW+ LV  G IEY+DTEEEETTMISMTINDLV AR +PE
Sbjct: 121  LVIKKHHIEELLDPTLPDEDRGWNKLVELGLIEYVDTEEEETTMISMTINDLVSARQNPE 180

Query: 697  EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN-YQFRMD 755
            EAY+ TYTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI     ++   D
Sbjct: 181  EAYSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGILCHKLFRLAXD 240

Query: 756  TLAYV-LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
                     PQKPL TTRAMEHLHFRQLPAG NAIV I CYSGYNQEDSVIMNQSSIDRG
Sbjct: 241  HXGVCPCTIPQKPLATTRAMEHLHFRQLPAGQNAIVGILCYSGYNQEDSVIMNQSSIDRG 300

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
            FFRS+ +RSYRDEEKK G+LVKE+F +P R   MGMRHGSYDKLDDDG+APPGTRVS ED
Sbjct: 301  FFRSISYRSYRDEEKKQGSLVKEEFEKPSRETVMGMRHGSYDKLDDDGIAPPGTRVSAED 360

Query: 875  VIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 934
            VIIGKTTP+  D+    A R+T+RD S SL+HSE+GMVDQVLLTTN  GLRFVK+RVRSV
Sbjct: 361  VIIGKTTPLP-DDGNEAARRFTKRDQSTSLKHSESGMVDQVLLTTNDQGLRFVKMRVRSV 419

Query: 935  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 994
            RIPQIGDKF+SRHGQKGTVG+TYTQEDMP+T EGI PDIIVNPHAIPSRMTIG LIEC++
Sbjct: 420  RIPQIGDKFASRHGQKGTVGITYTQEDMPFTQEGIVPDIIVNPHAIPSRMTIGHLIECLL 479

Query: 995  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1054
            GKVA H+G+EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L A IFLGPTY
Sbjct: 480  GKVATHIGREGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLQAQIFLGPTY 539

Query: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERL 1114
            YQRLKHMVDDKIHSR RGPVQILTRQPAEGR++DGGLRFGEMERDCMIAHGA+HF+KERL
Sbjct: 540  YQRLKHMVDDKIHSRARGPVQILTRQPAEGRAKDGGLRFGEMERDCMIAHGAAHFMKERL 599

Query: 1115 FDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1174
            FDQSDAYRVHVCE CGLIAIANLKK +FECRGCKNKTDIVQVHIPYACKLLFQELMAMAI
Sbjct: 600  FDQSDAYRVHVCEICGLIAIANLKKGTFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 659

Query: 1175 APRMLTKEDTKQSKDHKKK 1193
            APRM T+E+     +  +K
Sbjct: 660  APRMFTREEKANESEGTRK 678


>gi|45120568|gb|AAO64656.2| RNA polymerase II subunit RPB2, partial [Echinodontium tinctorium]
          Length = 871

 Score = 1140 bits (2948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/871 (62%), Positives = 677/871 (77%), Gaps = 31/871 (3%)

Query: 226  YVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGF 285
            ++AE+RS  E   +  S   V+M  R+  K  +SG  I+AT+PYI+ +IPI +VFRALG 
Sbjct: 4    FLAEIRSAVEKSGKTISQFQVKMFHRSQEK--TSGNVIKATIPYIKVDIPIWVVFRALGV 61

Query: 286  VADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKY 345
            ++D+DILEHICYD  D+ M+E+L+P +++ FVIQ++ +ALD+IG RG T G++R++RI+Y
Sbjct: 62   ISDRDILEHICYDMSDSPMLEMLKPCIDDGFVIQDRDIALDFIGNRGTTTGLSRERRIRY 121

Query: 346  AKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 405
            A+EILQKEMLPHV   +  E++KAY+FGY+IHRLLL A+ RR  DDRDH+G KRLDLAGP
Sbjct: 122  AQEILQKEMLPHVSMSEGSESRKAYFFGYMIHRLLLAAMERRELDDRDHFGKKRLDLAGP 181

Query: 406  LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QAN 464
            LL  LFRMLFRKLTRDV  ++QKCV+  K+ NL  AIK  TIT+GLKYSLATGNWG Q  
Sbjct: 182  LLANLFRMLFRKLTRDVYRHLQKCVETHKEFNLNLAIKHTTITNGLKYSLATGNWGDQKK 241

Query: 465  AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 524
            A   +AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQ
Sbjct: 242  AMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 301

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            ACGLVKNL+LM  I+VGS +  I++FLEEWG E+ EE + +     TK+FVNG WVGIHR
Sbjct: 302  ACGLVKNLSLMACISVGSTSGTIVDFLEEWGLESLEENAHSST-LTTKVFVNGVWVGIHR 360

Query: 585  DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 644
            DP  L+ TL++LRR+ DV+ EV +VRDIR +ELRIYTD G   RPLF+VE  +L+++K+ 
Sbjct: 361  DPTNLISTLKKLRRKDDVHPEVSIVRDIRERELRIYTDPGXVCRPLFVVENHQLVLEKKH 420

Query: 645  IIALQQ--RESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------H 694
            +  + Q  R+ P D   W  L+  G IE +D EEEET MI MT  DL  +RL       H
Sbjct: 421  VQWVSQGYRDHPXDPFHWSQLIKTGVIEMLDAEEEETVMICMTPEDLENSRLQAAGIDPH 480

Query: 695  PEE---------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
              E                   T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMG
Sbjct: 481  ANEDQEFDPAARLKAASGLTPHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMG 540

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYN
Sbjct: 541  KQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYN 600

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK++
Sbjct: 601  QEDSVIMNQSSIDRGLFRSIYYRSYMDMEKKAGVQQVEEFEKPTRDTTLHMKHGTYDKIE 660

Query: 860  DDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLL 917
            +DGL  PGT V+G D+IIGKT P+  D E  GQ SR +TRRD S  L+ +E+G+VDQVL+
Sbjct: 661  NDGLIAPGTGVNGADIIIGKTAPLPVDSEELGQRSRLHTRRDVSTPLKSTESGIVDQVLV 720

Query: 918  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
            TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NP
Sbjct: 721  TTNHEGHKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINP 780

Query: 978  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1037
            HAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++SK L + GYQ RG E MY+
Sbjct: 781  HAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSKFLLQQGYQSRGLEVMYH 840

Query: 1038 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            GHTGR+L A ++LGPTYYQRLKHMVDDKIH+
Sbjct: 841  GHTGRKLQAQVYLGPTYYQRLKHMVDDKIHA 871


>gi|45120564|gb|AAO64650.2| RNA polymerase II subunit RPB2, partial [Bondarzewia montana]
          Length = 867

 Score = 1138 bits (2944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/869 (62%), Positives = 678/869 (78%), Gaps = 30/869 (3%)

Query: 205  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 264
            QE+M+ NHVYVF K QP+   ++AE+RS  E   +  S   V+M  R+  K  +SG  ++
Sbjct: 1    QERMARNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMYHRSQEK--TSGNVMK 58

Query: 265  ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVA 324
            AT+PYI+ +IPI +VFRALG ++D+DILEHICYD QD+QM+E+L+P +++ FVIQ++++A
Sbjct: 59   ATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCIDDGFVIQDREIA 118

Query: 325  LDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCAL 384
            LD+IG RG T G++R++R++YA+EILQKEMLPH+   +  E+KKAY+FGY+IHRLLL A+
Sbjct: 119  LDFIGNRGTTTGLSRERRLRYAQEILQKEMLPHISMMEGSESKKAYFFGYMIHRLLLAAM 178

Query: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
             RR  DD DH+G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ NL  A+K 
Sbjct: 179  ERRELDDXDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKH 238

Query: 445  KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
             TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GR GK+AK
Sbjct: 239  NTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGRXGKIAK 298

Query: 504  PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
            PRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P+++FLEEWG E+ EE +
Sbjct: 299  PRQLHNTHWGMVCPAETPEGQACGLVKNLALMATISVGSPSGPVIDFLEEWGLESLEENA 358

Query: 564  PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
             +  P  TKIFVNG W+G+HRDP  L+ T+++LRR+ D++ EV VVRDIR +ELR+YTD 
Sbjct: 359  HSATP-TTKIFVNGIWMGVHRDPANLISTIKKLRRKDDIHPEVSVVRDIRERELRLYTDP 417

Query: 624  GRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG---WHDLVAKGFIEYIDTEEEETTM 680
            GR  RPLFIVE Q+L ++K+ I  L Q    +DG    W+ L+  G +E +D EEEET M
Sbjct: 418  GRVCRPLFIVEDQQLALQKKHIXWLNQGWRDDDGTPFKWNSLIKNGVVELLDAEEEETVM 477

Query: 681  ISMTINDLVQARL-------HPEEAYAD--------------TYTHCEIHPSLILGVCAS 719
            I MT  DL  +RL       H  +   D              T+THCEIHPS+ILG+CAS
Sbjct: 478  ICMTPEDLQNSRLQGSGVDPHANDGDFDPAARLKAASGINTHTWTHCEIHPSMILGICAS 537

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L F
Sbjct: 538  IIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKF 597

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F
Sbjct: 598  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 657

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 897
             +P R  T+ M+HG+YDK++DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TR
Sbjct: 658  EKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVTGEDIIIGKTAPIPPDSEELGQRTRTHTR 717

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  L+ +E+G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY
Sbjct: 718  RDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITY 777

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1017
             QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV++
Sbjct: 778  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVES 837

Query: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            +S  L + GYQ RG E MY+GHTGR+L A
Sbjct: 838  VSAFLRQQGYQSRGLEVMYHGHTGRKLQA 866


>gi|45545307|gb|AAS67501.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Candida glabrata]
          Length = 885

 Score = 1135 bits (2937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/887 (61%), Positives = 683/887 (77%), Gaps = 36/887 (4%)

Query: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
            VL AQE+ + N V VFKK  P+  ++VAE+RS  E  +R  ST+ V++  R S    SS 
Sbjct: 2    VLHAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRES----SSA 57

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
            + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD  D QM+E+L+P +E+ FVIQ+
Sbjct: 58   RTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQD 117

Query: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            ++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  E++KA++ GY+I+RLL
Sbjct: 118  RETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLL 177

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
            LCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LFRKLT+D+  Y+Q+ V+   D N++ 
Sbjct: 178  LCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEANDFNMKL 237

Query: 441  AIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 499
            AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+STLSHLRR N+PIGR+G
Sbjct: 238  AINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDG 297

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+   PI+ FL EWG E  
Sbjct: 298  KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPIITFLSEWGMEPL 357

Query: 560  EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 619
            E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N EV ++RDIR +EL+I
Sbjct: 358  EDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREQELKI 417

Query: 620  YTDYGRCSRPLFIVE------KQRLLIKKRDIIALQQRE---------SPEDGGWHDLVA 664
            +TD GR  RPLFIVE      ++ L ++K  +  L   E           ED  W  L+ 
Sbjct: 418  FTDAGRVYRPLFIVEDDEELGRKELKVRKGHVAKLMATEYQDIEGGFEDAEDYTWSSLLN 477

Query: 665  KGFIEYIDTEEEETTMISMTINDLVQARLH---PEEA-----------YADTYTHCEIHP 710
            +G +EYID EEEE+ +I+M   DL    +    P+E            +A T+THCEIHP
Sbjct: 478  EGLVEYIDAEEEESILIAMQPEDLEPTAVEQDIPKENVDLAKRIKVTHHATTFTHCEIHP 537

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY FRMDT+A +LYYPQKPL T
Sbjct: 538  SMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNFRMDTMANILYYPQKPLGT 597

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+EKK
Sbjct: 598  TRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKK 657

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ- 889
             G  + E F +P R+NT+ M+HG+YDKLD+DGL  PG RVSGED+IIGKTTPI+ DE + 
Sbjct: 658  YGMSITETFEKPQRTNTLRMKHGTYDKLDEDGLIAPGVRVSGEDIIIGKTTPIAPDEEEL 717

Query: 890  GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ + Y ++RD S  LR +E G+VDQVL+TTN DGL+FVKVRVR+ ++PQIGDKF+SRHG
Sbjct: 718  GQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHG 777

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC++ KVAA  G EGDA+
Sbjct: 778  QKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDAS 837

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A IF GPTYY
Sbjct: 838  PFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYY 884


>gi|56694370|gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum caudatum]
          Length = 565

 Score = 1135 bits (2935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/566 (94%), Positives = 557/566 (98%), Gaps = 1/566 (0%)

Query: 520  TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 579
            TPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCW
Sbjct: 1    TPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCW 60

Query: 580  VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 639
            VGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLL
Sbjct: 61   VGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLL 120

Query: 640  IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 699
            IKK+DI ALQQRE+ E+G WHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEAY
Sbjct: 121  IKKKDIRALQQRETHEEG-WHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAY 179

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
            ++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAY
Sbjct: 180  SETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAY 239

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL
Sbjct: 240  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 299

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            FFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK
Sbjct: 300  FFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 359

Query: 880  TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            TTPI+QDE+QGQASRYTRRDHS +LRHSE+GMVDQVLLTTNADGLRFVKVR+RSVR+PQI
Sbjct: 360  TTPIAQDESQGQASRYTRRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQI 419

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA
Sbjct: 420  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 479

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
            HMGKEGDATPFTDVTVD+IS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK
Sbjct: 480  HMGKEGDATPFTDVTVDSISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 539

Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGR 1085
            HMVDDKIHSRGRGPVQILTRQPAEGR
Sbjct: 540  HMVDDKIHSRGRGPVQILTRQPAEGR 565


>gi|45545341|gb|AAS67518.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Peltigera membranacea]
          Length = 895

 Score = 1134 bits (2934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/895 (60%), Positives = 678/895 (75%), Gaps = 41/895 (4%)

Query: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266
            + + N V VFKK  P+   Y+AE+RS  E  +R  S+M +++ ++     G  GQ ++AT
Sbjct: 1    RSAANIVQVFKKAPPSATPYIAEIRSAVEKGSRLISSMQIKLFAKGENHKGGFGQTVKAT 60

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            LPY++T++PI IVFR LG V+D+DIL HICYD  DTQM+E L+P +EEAFVIQ+++VALD
Sbjct: 61   LPYVKTDVPIGIVFRGLGIVSDEDILNHICYDRNDTQMLEKLKPCIEEAFVIQDREVALD 120

Query: 327  YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
            +IG RG +  ++R KR+KYA++I+QKE+LPH+   D  ETKKA++ GY++HR+L CALGR
Sbjct: 121  WIGSRGNSQSLSRPKRVKYARDIMQKELLPHISQTDGSETKKAFFLGYMVHRMLQCALGR 180

Query: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
            R  DDRDH+G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ T
Sbjct: 181  REVDDRDHFGKKRLDLAGPLLAGLFRMLFNKLTKDVFKYLQKCVENNREFNLTLGVKSTT 240

Query: 447  ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
            +T+GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPR
Sbjct: 241  LTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPR 300

Query: 506  QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
            QLHN+ WG++CPAETPEGQACGLVKNLALM YITVG+   PI++F+ +   E  EE  P 
Sbjct: 301  QLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPCEPIIDFMNQRNMEMLEEYEPL 360

Query: 566  VIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGR 625
              P ATK+FVNG WVG+HRDP  LV  ++ LRR   ++ EV +VRDIR +E +I+TD GR
Sbjct: 361  RSPNATKVFVNGVWVGVHRDPAHLVSNVQDLRRGHIISHEVSLVRDIRDREFKIFTDAGR 420

Query: 626  CSRPLFIVEKQ-------RLLIKKRDIIALQQRESPEDG-----------GWHDLVAKGF 667
              RPLF+++          L++ K  I  L++ +    G           GW  LV +G 
Sbjct: 421  VCRPLFVIDNDTRSMNYGNLVLTKEHITRLEEDKEAAIGMDRDELEARQMGWDGLVNQGV 480

Query: 668  IEYIDTEEEETTMISMTINDLVQAR------LHPEEA--------------YADTYTHCE 707
            +EY+D EEEET MI MT  DL  +R        PE A               A T+THCE
Sbjct: 481  VEYVDAEEEETVMIVMTPGDLETSRQIQLGKAVPENAEDEPNKRVNAMSHRSAQTWTHCE 540

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKP
Sbjct: 541  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKP 600

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            + TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+
Sbjct: 601  MATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQ 660

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 886
            EK++G  + E F +P R++T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT PI  D 
Sbjct: 661  EKRIGMSIVEQFEKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAPIPPDS 720

Query: 887  EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
            E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+S
Sbjct: 721  EELGQRTKMHIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFAS 780

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV+A  G EG
Sbjct: 781  RHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSALRGFEG 840

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            DATPFT+VTVD++SK L   GYQ RGFE MYN HTG++L A +FLGPTYYQRL+H
Sbjct: 841  DATPFTEVTVDSVSKILRAHGYQSRGFEVMYNAHTGQKLVAQVFLGPTYYQRLRH 895


>gi|410610281|gb|AFV74909.1| RNA polymerase II second largest subunit, partial [Balanophora
            laxiflora]
          Length = 569

 Score = 1134 bits (2933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/569 (95%), Positives = 563/569 (98%)

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            ACGLVKNLALMV+ITVGSAAYPILEFLEEWGTENFEEISPAVIP ATKIFVNGCWVGIHR
Sbjct: 1    ACGLVKNLALMVHITVGSAAYPILEFLEEWGTENFEEISPAVIPTATKIFVNGCWVGIHR 60

Query: 585  DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 644
            DP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK+RLLIKK+D
Sbjct: 61   DPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKKRLLIKKKD 120

Query: 645  IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 704
            I ALQQRESP++GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV  R++PEEAY++TYT
Sbjct: 121  IQALQQRESPDEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSGRINPEEAYSETYT 180

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ+RMDTLAYVLYYP
Sbjct: 181  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQYRMDTLAYVLYYP 240

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 241  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 300

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
            RDEEKKMGTLVKEDFGRPDR++TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+
Sbjct: 301  RDEEKKMGTLVKEDFGRPDRADTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIT 360

Query: 885  QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
            QD+ QGQASRYTR+DHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
Sbjct: 361  QDDNQGQASRYTRQDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 420

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
Sbjct: 421  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 480

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT++IFLGPTYYQRLKHMVDD
Sbjct: 481  GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSLIFLGPTYYQRLKHMVDD 540

Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            KIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 541  KIHSRGRGPVQILTRQPAEGRSRDGGLRF 569


>gi|45545351|gb|AAS67523.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Thamnolia vermicularis]
          Length = 893

 Score = 1132 bits (2927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/897 (60%), Positives = 686/897 (76%), Gaps = 47/897 (5%)

Query: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266
            + + N V VFKK    K  +VAE+RS  E  +R  S+M +++ S+     G  GQ I++T
Sbjct: 1    RSAANIVQVFKKSD-GKTPFVAEIRSAVEKGSRLISSMQIKLHSKGEGAKGGFGQTIKST 59

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            LPYI++EIPI+IVFRALG V+D+DIL HICYD  DTQM+E+L+P +EEAFVIQ+++VALD
Sbjct: 60   LPYIKSEIPIVIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALD 119

Query: 327  YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
            +IGKRG + G+TRDKRIKYA++I+QKE+LPH+   +  ET+KA++ GY++HR+L  ALGR
Sbjct: 120  FIGKRGNSQGITRDKRIKYARDIMQKELLPHISQVEGSETRKAFFLGYMVHRMLQVALGR 179

Query: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
            R  DDRDH+G KRLDLAGPL+ GLFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ T
Sbjct: 180  RDPDDRDHFGKKRLDLAGPLMAGLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTT 239

Query: 447  ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
            +T+GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPR
Sbjct: 240  LTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPR 299

Query: 506  QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
            QLHN+ WG++CPAETPEGQACGLVKNLALM  +TVGS + PI++F+ +   E  EE  P 
Sbjct: 300  QLHNTHWGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMVQRNMEILEEYEPL 359

Query: 566  VIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGR 625
              P ATK+FVNG WVG+HRDP  LV T+  LRRR  ++ EV ++RDIR +E +I+TD GR
Sbjct: 360  RSPNATKVFVNGVWVGVHRDPAHLVSTVMSLRRRGLISHEVSLIRDIRDREFKIFTDAGR 419

Query: 626  CSRPLFIVE-------KQRLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGF 667
              RPLF+++       K  L++ K  +  L+  ++ P D           GW  L+ +G 
Sbjct: 420  VCRPLFVIDNDAKSPNKGSLVLTKELVNRLEDDKDLPADMDPDEKAAKTMGWDGLIKRGV 479

Query: 668  IEYIDTEEEETTMISMTINDL----------------------VQARLHPEEAYADTYTH 705
            +EY+D EEEET MI MT  DL                      V+A L+P    A T+TH
Sbjct: 480  VEYLDAEEEETVMIVMTPEDLDISRQLQAGYQMPETTDDPNKRVKAPLNPT---AHTWTH 536

Query: 706  CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 765
            CEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+  +LYYPQ
Sbjct: 537  CEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMTNILYYPQ 596

Query: 766  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 825
            KPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R Y 
Sbjct: 597  KPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRVYT 656

Query: 826  DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
            D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ 
Sbjct: 657  DQEKRVGMSVVEMFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAP 716

Query: 886  D-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
            D E  GQ ++ + +RD S  LR +E G+VD+VLLTTN +GLRFVKVR+R+ +IPQIGDKF
Sbjct: 717  DAEELGQRTKLHIKRDVSTPLRSTENGLVDKVLLTTNHEGLRFVKVRMRTTKIPQIGDKF 776

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            +SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G 
Sbjct: 777  ASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 836

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            EGDATPFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 837  EGDATPFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 893


>gi|410610287|gb|AFV74912.1| RNA polymerase II second largest subunit, partial [Schoepfia
            jasminodora]
          Length = 569

 Score = 1131 bits (2926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/569 (95%), Positives = 560/569 (98%)

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            ACGLVKNLALMVYITVGSAA PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR
Sbjct: 1    ACGLVKNLALMVYITVGSAASPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 60

Query: 585  DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 644
            DP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+D
Sbjct: 61   DPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD 120

Query: 645  IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 704
            I  LQQRE+ E+GGWHDLVAKGFIEYIDTEEEETTMISMTI+DLV AR +P EAY++TYT
Sbjct: 121  IQTLQQRETAEEGGWHDLVAKGFIEYIDTEEEETTMISMTISDLVSARTNPGEAYSETYT 180

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP
Sbjct: 181  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 240

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPLVTTRAMEHLHFRQLPAGINAIV+IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 241  QKPLVTTRAMEHLHFRQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 300

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
            RDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+
Sbjct: 301  RDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIA 360

Query: 885  QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
            QDE+QGQA+RYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
Sbjct: 361  QDESQGQATRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 420

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT+GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH+GKE
Sbjct: 421  SRHGQKGTIGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKE 480

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD
Sbjct: 481  GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 540

Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            KIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 541  KIHSRGRGPVQILTRQPAEGRSRDGGLRF 569


>gi|156627827|gb|ABU88901.1| RNA polymerase II second largest subunit [Phymatotrichopsis omnivora]
 gi|156627829|gb|ABU88902.1| RNA polymerase II second largest subunit [Phymatotrichopsis omnivora]
 gi|156627831|gb|ABU88903.1| RNA polymerase II second largest subunit [Phymatotrichopsis omnivora]
 gi|156627833|gb|ABU88904.1| RNA polymerase II second largest subunit [Phymatotrichopsis omnivora]
          Length = 884

 Score = 1131 bits (2926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/885 (60%), Positives = 689/885 (77%), Gaps = 32/885 (3%)

Query: 204  AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI 263
            AQE+ + N V VFKK  P+   YVAE+RS  E  +R  S+M +++ S++  +GG +   I
Sbjct: 1    AQERSAANIVQVFKKALPSPTPYVAEIRSAVEKGSRLISSMQIKLYSKSDPRGGYNAT-I 59

Query: 264  RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQV 323
            ++TLPYI+++IPI+IVFRALG V+D+DIL H+CYD  DT+M+E+++P +EEAFVIQ+++V
Sbjct: 60   KSTLPYIKSDIPIVIVFRALGVVSDEDILNHVCYDRNDTEMLEMMKPCIEEAFVIQDREV 119

Query: 324  ALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 383
            ALD+IGKRG + GV ++KRI+YA++I+QKE+LPH+   +  ET+KA++ GY++HR+L CA
Sbjct: 120  ALDFIGKRGNSQGVNKEKRIRYARDIMQKELLPHISQKEGSETRKAFFLGYMVHRMLQCA 179

Query: 384  LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIK 443
            L RR  DDRDH+G KRLDLAGPLL  LFR L+++LT++V  Y++KCV+  K+ NL  A+K
Sbjct: 180  LERREVDDRDHFGKKRLDLAGPLLAQLFRNLWKQLTKEVYKYLEKCVEGSKEFNLNLAVK 239

Query: 444  AKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            + TIT+GLKYSLATGNW  Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+A
Sbjct: 240  SNTITTGLKYSLATGNWASQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIA 299

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHN+ WG++CPAETPEGQACGLVKNLALM YITVG+   PI++F+ +   E  EE 
Sbjct: 300  KPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYITVGTPGDPIVDFMAQRNMEFLEEY 359

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
             P   P ATKIFVNG WVGIHRDP  LV+T+++LRR   ++ EV V+RDIR +E +I+TD
Sbjct: 360  EPQRSPNATKIFVNGVWVGIHRDPLQLVRTVQKLRRTGVISHEVSVIRDIRDREFKIFTD 419

Query: 623  YGRCSRPLFIVE-------KQRLLIKKRDIIALQQRES-PEDG--GWHDLVAKGFIEYID 672
             GR  RPLF ++       + +L+++K  I  L+   S PE+   GW  L++ G +EY+D
Sbjct: 420  AGRVCRPLFAIDNDPTSERRGQLVLQKEHIERLEDDHSLPEEERFGWKGLLSVGAVEYLD 479

Query: 673  TEEEETTMISMTINDL-----VQARLH-------------PEEAYADTYTHCEIHPSLIL 714
             EEEET MI MT  DL     VQA                P      T+THCEIHPS+IL
Sbjct: 480  AEEEETVMIVMTPEDLELSRQVQAGYEVAEETDMGKRVKAPINPATHTWTHCEIHPSMIL 539

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            G+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+M
Sbjct: 540  GICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFAERMDTMANILYYPQKPLATTRSM 599

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  
Sbjct: 600  EYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYMDQEKRIGMQ 659

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 893
            + E+F +P RSNT+ ++HG+YDKLD+DGL  PG RVSGED+IIGKT PI+ D +  GQ  
Sbjct: 660  IVEEFEKPMRSNTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPIAPDLDEMGQRQ 719

Query: 894  RY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
            +Y T+RD S  LR +E G+VDQV+LTTNA+GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT
Sbjct: 720  KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGT 779

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            +G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTD
Sbjct: 780  IGITYRMEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTD 839

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 840  VTVDSVSQLLRQEGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 884


>gi|45120572|gb|AAO64666.2| RNA polymerase II subunit RPB2, partial [Lycoperdon pyriforme]
          Length = 849

 Score = 1131 bits (2925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/852 (63%), Positives = 668/852 (78%), Gaps = 27/852 (3%)

Query: 226  YVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGF 285
            ++AE+RS  E   +  S   V+M  R   +  S G  ++AT+PYI+ +IPI +VFR LG 
Sbjct: 1    FLAEIRSAVERGGKTISQFQVKMFHRNQER--SLGNVMKATIPYIKVDIPIWVVFRGLGV 58

Query: 286  VADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKY 345
            ++D+DILEHICYD QDTQM+E+L+P +++ FVIQ+++VALD+IG RG T G++R++RI+Y
Sbjct: 59   ISDRDILEHICYDMQDTQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRERRIRY 118

Query: 346  AKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 405
            A+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGP
Sbjct: 119  AQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGP 178

Query: 406  LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QAN 464
            LL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  
Sbjct: 179  LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKK 238

Query: 465  AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 524
            +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQ
Sbjct: 239  SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 298

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            ACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HR
Sbjct: 299  ACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHR 357

Query: 585  DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 644
            DP  L+KT+++LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIVE Q+LL++K+ 
Sbjct: 358  DPANLMKTIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLQKKH 417

Query: 645  IIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HP 695
            I  L     E   +  W  ++  G IE +D EEEET MISMT  DL  +RL       H 
Sbjct: 418  IRWLNSGFDEEGSEYKWEQMIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDPHA 477

Query: 696  EEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
             +             +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 478  NDGDFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAM 537

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            GIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS
Sbjct: 538  GIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDS 597

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            VIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL
Sbjct: 598  VIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKLEDDGL 657

Query: 864  APPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNA 921
              PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN+
Sbjct: 658  IAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNS 717

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+++NPHAIP
Sbjct: 718  EGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIP 777

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTG
Sbjct: 778  SRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTG 837

Query: 1042 RRLTAMIFLGPT 1053
            R+L A ++LGPT
Sbjct: 838  RKLQAQVYLGPT 849


>gi|46277281|gb|AAS86831.1| RNA polymerase II second largest subunit, partial [Arceuthobium
            campylopodum]
          Length = 584

 Score = 1130 bits (2922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/584 (91%), Positives = 568/584 (97%)

Query: 475  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 534
            VLNRLTYASTLSHLRRLNSPIGREGKL KPRQLHNSQWGMM PAETPEGQACGLVKNLAL
Sbjct: 1    VLNRLTYASTLSHLRRLNSPIGREGKLPKPRQLHNSQWGMMXPAETPEGQACGLVKNLAL 60

Query: 535  MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 594
            MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ+TKIFVNGCWVGIHRDP+MLVKTLR
Sbjct: 61   MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQSTKIFVNGCWVGIHRDPDMLVKTLR 120

Query: 595  RLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESP 654
            RLRRRVDVNTEVGVVRDI LKELR+YTDYGRCSRPLFIV++QRLLIKK+DI ALQQR++ 
Sbjct: 121  RLRRRVDVNTEVGVVRDICLKELRLYTDYGRCSRPLFIVDEQRLLIKKKDIQALQQRDAS 180

Query: 655  EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLIL 714
            E+GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV  RL+ ++AY+ TYTHCEIHPSLIL
Sbjct: 181  EEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVNGRLNLDDAYSKTYTHCEIHPSLIL 240

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM
Sbjct: 241  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 300

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL
Sbjct: 301  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 360

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR 894
            +KEDFGRP+R++TMGMRHGSYDKLDDDGLAPPGT+V+GE+VIIGKT+PI+ DE+Q Q+ R
Sbjct: 361  IKEDFGRPNRTDTMGMRHGSYDKLDDDGLAPPGTKVTGENVIIGKTSPIAPDESQEQSFR 420

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            YT+RDHS SLRHSE G+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT+G
Sbjct: 421  YTKRDHSTSLRHSENGVVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTIG 480

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI QLIECIMGKVAAHMGKEGDATPFTDVT
Sbjct: 481  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIAQLIECIMGKVAAHMGKEGDATPFTDVT 540

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            VDNIS+ALHKCGYQM GFETMYNGHTGR+LT+MIF+GPTYYQRL
Sbjct: 541  VDNISQALHKCGYQMHGFETMYNGHTGRKLTSMIFIGPTYYQRL 584


>gi|45545327|gb|AAS67511.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Dibaeis baeomyces]
          Length = 893

 Score = 1128 bits (2918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/897 (60%), Positives = 684/897 (76%), Gaps = 47/897 (5%)

Query: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266
            + + N V VFKK    K  YVAE+RS  E  +R  S+M +++ S+     G  GQ I+AT
Sbjct: 1    RSAANIVQVFKKSDA-KTPYVAEIRSAVEKGSRLISSMQIKLHSKGEGAKGGFGQTIKAT 59

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            LPYI++EIPI+IVFRALG V+D+DIL HICYD +DTQM+E+L+P +EEAFVIQ+++VALD
Sbjct: 60   LPYIKSEIPIVIVFRALGVVSDEDILNHICYDRKDTQMLEMLKPCIEEAFVIQDREVALD 119

Query: 327  YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
            +IGKRG + G+TRDKRIKYA++I+QKE+LPH+   +  ET+KA++ GY++HR+L   LGR
Sbjct: 120  FIGKRGNSQGITRDKRIKYARDIMQKELLPHISQVEGSETRKAFFLGYMVHRMLQVTLGR 179

Query: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
            R  DDRDH+G KRLDLAGPL+ GLFR LF KLT+DV  Y+QKCV++ ++ NL   +K+ T
Sbjct: 180  RDPDDRDHFGKKRLDLAGPLMAGLFRTLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTT 239

Query: 447  ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
            +T+GL+YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPR
Sbjct: 240  LTNGLRYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPR 299

Query: 506  QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
            QLHN+ WG++CPAETPEGQACGLVKNLALM  +TVGS + PI++F+ +   E  EE  P 
Sbjct: 300  QLHNTHWGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMVQRNMEILEEYEPL 359

Query: 566  VIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGR 625
              P ATK+FVNG WVG+HRDP  LV T+  LRRR  ++ EV +VRDIR +E +I+TD GR
Sbjct: 360  RSPNATKVFVNGVWVGVHRDPAHLVSTVMSLRRRGLISHEVSLVRDIRDREFKIFTDAGR 419

Query: 626  CSRPLFIVE-------KQRLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGF 667
              RPLF+++       K  L++ K  +  L+  ++ P D           GW  L+ +G 
Sbjct: 420  VCRPLFVIDNDAKSPNKGSLVLTKELVSRLEDDKDLPADMDPDEKAAKIMGWDGLIKRGV 479

Query: 668  IEYIDTEEEETTMISMTINDL----------------------VQARLHPEEAYADTYTH 705
            +EY+D EEEET MI MT  DL                      V+A L+P    A T+TH
Sbjct: 480  VEYLDAEEEETVMIVMTPEDLDISRQLQAGYQLPETTDDPNKRVKAPLNPT---AHTWTH 536

Query: 706  CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 765
            CEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN+  RMD    +LYYPQ
Sbjct: 537  CEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFSERMDNAFNILYYPQ 596

Query: 766  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 825
            KPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSL++R+Y 
Sbjct: 597  KPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYT 656

Query: 826  DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
            D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG R+SGED+IIGKT PI+ 
Sbjct: 657  DQEKRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRISGEDIIIGKTEPIAP 716

Query: 886  D-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
            D E  GQ ++ + +RD S  LR +E G+VD+V+L+TNA+GLRFVKVR R+ +IPQIGDKF
Sbjct: 717  DSEELGQRTKLHVKRDKSTPLRTTENGLVDKVMLSTNAEGLRFVKVRTRTTKIPQIGDKF 776

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            +SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G 
Sbjct: 777  ASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGY 836

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            EGDATPFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 837  EGDATPFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 893


>gi|46277267|gb|AAS86824.1| RNA polymerase II second largest subunit, partial [Eschscholzia
            californica]
          Length = 559

 Score = 1127 bits (2916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/559 (94%), Positives = 550/559 (98%)

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            KLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENF
Sbjct: 1    KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENF 60

Query: 560  EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 619
            EEISPAVIPQ+TKIFVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDI LKELR+
Sbjct: 61   EEISPAVIPQSTKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIHLKELRL 120

Query: 620  YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 679
            YTDYGRCSRPLFIVEKQRLLIKK+DI ALQ RESPE+GGWHDLVAKGFIEY+DTEEEETT
Sbjct: 121  YTDYGRCSRPLFIVEKQRLLIKKKDIQALQLRESPEEGGWHDLVAKGFIEYVDTEEEETT 180

Query: 680  MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
            MISMTINDLV AR++P+EAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 181  MISMTINDLVSARVNPKEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 240

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN
Sbjct: 241  KQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 300

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL+KEDFGRP+R NTMGMRHGSYDKLD
Sbjct: 301  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLD 360

Query: 860  DDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTT 919
            DDGLAPPGTRVSGEDVIIGKTTPI+QD++QGQASRYTRRDHS SLRHSE+GMVDQVLLTT
Sbjct: 361  DDGLAPPGTRVSGEDVIIGKTTPIAQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTT 420

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
            NADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA
Sbjct: 421  NADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 480

Query: 980  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
            IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH
Sbjct: 481  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 540

Query: 1040 TGRRLTAMIFLGPTYYQRL 1058
            TGR+LTAMIFLGPTYYQRL
Sbjct: 541  TGRKLTAMIFLGPTYYQRL 559


>gi|45545305|gb|AAS67500.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Baeomyces sp. SLJ472]
          Length = 894

 Score = 1127 bits (2915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/891 (60%), Positives = 678/891 (76%), Gaps = 42/891 (4%)

Query: 211  NHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYI 270
            N V +FKK   NK  +VAE+RS  E  +R  S + +++ S+     G  GQ I+ TLPYI
Sbjct: 5    NIVQIFKKAD-NKTPFVAEIRSAVEKGSRLISGLQIKIHSKGEGAKGGLGQTIKVTLPYI 63

Query: 271  RTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGK 330
            ++E+PI IVFRALG V+D+DIL HICYD QDT M+ELL+P +EEAFVIQ+++VALD+IGK
Sbjct: 64   KSEVPIAIVFRALGVVSDEDILNHICYDRQDTPMLELLKPCIEEAFVIQDREVALDFIGK 123

Query: 331  RGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAED 390
            RG +  +TRDKRIKYA++I+ KE+LPH+   +  ET+KA++ GY++HR+L   LGRR  D
Sbjct: 124  RGNSNSITRDKRIKYARDIVVKELLPHISQTEGSETRKAFFLGYMVHRMLQVVLGRREPD 183

Query: 391  DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSG 450
            DRDH+G KRLDLAGPL+ GLFRMLF KL +DV  Y++KCV++ ++ NL   +K+ T+T+G
Sbjct: 184  DRDHFGKKRLDLAGPLMAGLFRMLFNKLVKDVYNYLKKCVESNREFNLSLGVKSTTLTNG 243

Query: 451  LKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 509
            LKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN
Sbjct: 244  LKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHN 303

Query: 510  SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ 569
            + WG++CPAETPEGQACGLVKNL+LM YITVG+   PI++F+ +   E  EE  P   P 
Sbjct: 304  THWGLVCPAETPEGQACGLVKNLSLMCYITVGTPNEPIIDFMIQRSMEVLEEYEPTRSPN 363

Query: 570  ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRP 629
            ATK+FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RP
Sbjct: 364  ATKVFVNGVWVGVHRDPAHLVSTVQSLRRRSLISHEVSLVRDIRDREFKIFTDAGRVCRP 423

Query: 630  LFIVE-------KQRLLIKKRDIIALQ-QRESPED----------GGWHDLVAKGFIEYI 671
            LF++E       K  L++ K  +  L+  ++ P D           GW  LV  G +E++
Sbjct: 424  LFVIENDAKKANKGSLVLTKELVNRLEDDKDIPSDLDPDERAARYFGWDGLVKSGAVEFL 483

Query: 672  DTEEEETTMISMTINDLVQARLH--------------------PEEAYADTYTHCEIHPS 711
            D EEEET MI MT  DL  +R                      P +A + T+THCEIHPS
Sbjct: 484  DAEEEETVMIVMTPEDLEISRQLQMGYTMPSSNNVDPNSRIKVPIKASSHTWTHCEIHPS 543

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TT
Sbjct: 544  MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLATT 603

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            R+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D+EK++
Sbjct: 604  RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYTDQEKRI 663

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 890
            G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  G
Sbjct: 664  GMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELG 723

Query: 891  QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            Q ++ + +RD S  LR +E G+VD+VLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQ
Sbjct: 724  QRTKLHIKRDVSTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQ 783

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATP
Sbjct: 784  KGTIGITYRMEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATP 843

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            FT+VTVD+IS  L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 844  FTEVTVDSISSLLREHGYQSRGFEIMYNGHTGRKLVAQVFLGPTYYQRLRH 894


>gi|56694368|gb|AAW22924.1| RNA polymerase II second largest subunit [Drimys winteri]
          Length = 565

 Score = 1127 bits (2914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/566 (93%), Positives = 554/566 (97%), Gaps = 1/566 (0%)

Query: 520  TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 579
            TPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCW
Sbjct: 1    TPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCW 60

Query: 580  VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 639
            VGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLL
Sbjct: 61   VGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLL 120

Query: 640  IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 699
            I+K+DI ALQQRE+ E+G WHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+   AY
Sbjct: 121  IRKKDIRALQQRETQEEG-WHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNRGVAY 179

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
            ++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAY
Sbjct: 180  SETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAY 239

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL
Sbjct: 240  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 299

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            FFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK
Sbjct: 300  FFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 359

Query: 880  TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            TTPI+QDE+QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVR+PQI
Sbjct: 360  TTPIAQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQI 419

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA
Sbjct: 420  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 479

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
            HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLK
Sbjct: 480  HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLK 539

Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGR 1085
            HMVDDKIHSRGRGPVQILTRQPAEGR
Sbjct: 540  HMVDDKIHSRGRGPVQILTRQPAEGR 565


>gi|55831373|gb|AAV66545.1| RNA polymerase II second largest subunit [Fomitiporia mediterranea]
          Length = 898

 Score = 1123 bits (2905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/902 (59%), Positives = 678/902 (75%), Gaps = 67/902 (7%)

Query: 228  AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            AE+RS  E   +  S   V+M  R   +  +SG  ++AT+PYI+ +IPI +VFRALG ++
Sbjct: 1    AEIRSAVEQGGKTISQFQVKMYHRGQER--ASGSVMKATIPYIKVDIPIWVVFRALGVIS 58

Query: 288  DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
            D+DILEHIC+D  D+ M+E+L+P +++ FVIQ+++VALD+IG RG   G+ RDKR++YA+
Sbjct: 59   DRDILEHICFDMNDSSMLEMLKPCIDDGFVIQDREVALDFIGNRGTATGLNRDKRLRYAQ 118

Query: 348  EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
            EILQKEMLPH+   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAGPLL
Sbjct: 119  EILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLL 178

Query: 408  GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAA 466
             GLFRMLFRKLT+DV  Y+QKCV+  K+ N+  AIK +T+T+GLKYSLATGNWG Q  A 
Sbjct: 179  TGLFRMLFRKLTKDVYRYLQKCVETHKEFNINMAIKTQTLTNGLKYSLATGNWGDQKKAM 238

Query: 467  GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAC 526
             ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQAC
Sbjct: 239  SSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQAC 298

Query: 527  GLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP 586
            GLVKNLALM  I+VGS + P+++FLEEWG E  EE + +     TK+FVNG W+G+ RDP
Sbjct: 299  GLVKNLALMAVISVGSVSGPVIDFLEEWGLETLEENTQST--NLTKVFVNGVWLGVCRDP 356

Query: 587  EMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 646
              +V TLR LRR  D ++EV +VRDIR +E+RIY+D GR  RPLFIVE  +L +K++ + 
Sbjct: 357  LNMVNTLRTLRRMQDFDSEVSIVRDIREREIRIYSDAGRVLRPLFIVEDHKLKLKRQHLR 416

Query: 647  ALQQR----ESP---------------------EDG-----------------GWHDLVA 664
             LQ++    E P                     E+G                  W  L+ 
Sbjct: 417  WLQEKWRIEERPYVPREERNKEEVSEGETVADEEEGRPIMRDERRVKRKKKPFTWSSLIR 476

Query: 665  KGFIEYIDTEEEETTMISMTINDLVQARL-------------HPEE-----AYADTYTHC 706
             G IE +D EEEET MI MT +DL+++RL             +P         A T+THC
Sbjct: 477  DGVIELLDAEEEETVMICMTPDDLLESRLLRRGLDPRAEADFNPAARLKPLPIAHTWTHC 536

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            EIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  R DT+A +LYYPQK
Sbjct: 537  EIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLMRQDTMANILYYPQK 596

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
            PL TTRAME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSL++R+Y D
Sbjct: 597  PLATTRAMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYMD 656

Query: 827  EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 886
            +EK+ G ++ ++F +P R  T+ M+HG+YDKL+DDGL  PG  V G+D+IIGKT PI  D
Sbjct: 657  QEKRSGAIIVDEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVRGDDIIIGKTAPIPPD 716

Query: 887  -EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
             E  GQ +R +T+RD S  L+ +E G+VDQV++TTNA+G +FVK+RVRS RIPQIGDKF+
Sbjct: 717  SEELGQRTRGHTKRDISTPLKSTEQGIVDQVVVTTNAEGTKFVKIRVRSTRIPQIGDKFA 776

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ K+A  +G E
Sbjct: 777  SRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATIVGNE 836

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTD+TVD++S  L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDD
Sbjct: 837  GDATPFTDLTVDSVSSVLREKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDD 896

Query: 1065 KI 1066
            KI
Sbjct: 897  KI 898


>gi|45545311|gb|AAS67503.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Candida parapsilosis]
          Length = 892

 Score = 1123 bits (2905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/893 (60%), Positives = 680/893 (76%), Gaps = 46/893 (5%)

Query: 204  AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI 263
            AQE+ + N V VFKK  P+  ++VAE+RS  E  +R  S+M +++  R   +  SS + I
Sbjct: 5    AQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD--EKSSSARTI 62

Query: 264  RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQV 323
            +ATLPYI+ +IPI+IVFRALG V D DILEHICYD  D QM+E+L+P +EE FVIQ ++V
Sbjct: 63   KATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQEREV 122

Query: 324  ALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 383
            ALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  ET+KA++ GY+++RLLLCA
Sbjct: 123  ALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLLCA 181

Query: 384  LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIK 443
            L R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLT+D+  Y+Q+CV+N K+ NL  A+K
Sbjct: 182  LERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENDKEFNLTLAVK 241

Query: 444  AKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            ++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+STLSHLRR N+PIGR+GK+A
Sbjct: 242  SQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIA 301

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            KPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ + PI  FL +WG E  E+ 
Sbjct: 302  KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPISSFLRDWGLEPLEDY 361

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTD 622
             P+  P AT++FVNG WVG+HR+P  LV  +R LRR  D++ EV ++RDIR KEL+I+TD
Sbjct: 362  VPSNSPDATRVFVNGVWVGVHREPASLVDYMRDLRRNGDISPEVSIIRDIREKELKIFTD 421

Query: 623  YGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDGG-------WHDLVAKGFI 668
             GR  RPLFIV+       K  L +KK  +  L   ES  DG        W  LV +G +
Sbjct: 422  AGRVYRPLFIVDDNPDSETKGDLKLKKEHVNRLL--ESSYDGDEDEPSYTWSSLVREGIV 479

Query: 669  EYIDTEEEETTMISMTINDLVQAR----------LHPEEAYAD--------------TYT 704
            EY+D EEEET MI+MT +DL  ++          L  EE   D              T+T
Sbjct: 480  EYVDAEEEETIMIAMTPDDLEASKSNLTETQQQDLQMEEQELDPAKRIKPTGSSNTHTFT 539

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYP
Sbjct: 540  HCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYAVRMDTMANILYYP 599

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRGFFRSLFFRSY
Sbjct: 600  QKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGFFRSLFFRSY 659

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
             D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  PG RVSGED+IIGKTTPI 
Sbjct: 660  MDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIP 719

Query: 885  QD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 942
             D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +FVKVR+R+ ++PQIGDK
Sbjct: 720  PDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDK 779

Query: 943  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
            F+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC++ KV++  G
Sbjct: 780  FASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSG 839

Query: 1003 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
             EGDA+PFTDVT + ISK L + GYQ RGFE MYNGHTG++L A +F GPTYY
Sbjct: 840  LEGDASPFTDVTAEAISKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYY 892


>gi|6606107|gb|AAF19066.1|AF107794_1 DNA-dependent RNA polymerase II RPB140 [Byssochlamys nivea]
          Length = 905

 Score = 1123 bits (2905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/905 (59%), Positives = 688/905 (76%), Gaps = 42/905 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N   VFKK  P+   YVAE+RS  E  +R  S + +++ S+  +  G
Sbjct: 1    SEKVLIAQERSAGNIAQVFKKAPPSPTPYVAEIRSAVEKGSRILSQLSLKLFSKGDSAKG 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              G  IR+TLPYI+T+IPI++VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FV
Sbjct: 61   GFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFV 120

Query: 318  IQNQQVALDYIGKRGAT-VGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            IQ+++VALD+I KRG++   +  ++R++YA+EI+QKE LPH+   +  ET+KA++ GY++
Sbjct: 121  IQDREVALDFISKRGSSQTSMNHERRVRYAREIMQKEFLPHISQSEGSETRKAFFLGYMV 180

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            HRLL CALGRR  DDRDH+G KRLDLAGPLL  LFR LF ++TRD++ YVQ+CV+  +++
Sbjct: 181  HRLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRTLFTRVTRDLQRYVQRCVETNREI 240

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
             L   +KA T+T GLKY+LATGNWG Q  AA ++AGVSQVL+R TY+STLSHLRR N+PI
Sbjct: 241  YLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYSSTLSHLRRTNTPI 300

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +  
Sbjct: 301  GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRN 360

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             E  EE  P V P ATK+FVNG WVGIHRDP  LV T++ LRRR  ++ EV +VRDIR +
Sbjct: 361  MEVLEEFEPQVTPNATKVFVNGVWVGIHRDPSHLVSTVQSLRRRNMISHEVSLVRDIRDR 420

Query: 616  ELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQRE------SPEDG----- 657
            E +I+TD GR  RPLF+++          L++ K  I  L+Q +      SPE+      
Sbjct: 421  EFKIFTDAGRVCRPLFVIDNDPKSENCGSLVLNKEHIRKLEQDKELPPDLSPEERRERYF 480

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDL-VQARLH-----PEEAYAD---------- 701
            GW  LV  G +EY+D EEEET MI MT  DL +  +L      PE+   D          
Sbjct: 481  GWDGLVRSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYALPEDEGNDPNKRVRSVLS 540

Query: 702  ----TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
                T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+
Sbjct: 541  QKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETM 600

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FR
Sbjct: 601  ANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 660

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLF+R+Y D EK +G  V E F +P RS+T+GMR G+YDK+D+DG+  PG RVSGED+II
Sbjct: 661  SLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDKIDEDGIIAPGVRVSGEDIII 720

Query: 878  GKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKT P++ + E  GQ ++ +T+ D S  LR +E G+VDQVL++T+ D L+FVKVR+R+ +
Sbjct: 721  GKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTK 780

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            IPQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + 
Sbjct: 781  IPQVGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLS 840

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KV++  G EGDATPFTDVTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYY
Sbjct: 841  KVSSLRGFEGDATPFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 900

Query: 1056 QRLKH 1060
            QRL+H
Sbjct: 901  QRLRH 905


>gi|45120578|gb|AAO64677.2| RNA polymerase II subunit RPB2, partial [Henningsomyces candidus]
          Length = 848

 Score = 1123 bits (2904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/853 (62%), Positives = 672/853 (78%), Gaps = 32/853 (3%)

Query: 225  AYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 284
             ++AE+RS  E   +  S   V+M  ++  +G +SG  ++A++PYI+ +IPI +VFRALG
Sbjct: 1    GFLAEIRSAVEKGGKTISQFQVKMFHKS--EGKTSGGVMKASIPYIKVDIPIWVVFRALG 58

Query: 285  FVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIK 344
             ++D+DILEHICYD QD Q++E+L+P +++ FVIQ+++VALD+IG RG T G++RDKRI+
Sbjct: 59   VISDRDILEHICYDMQDAQILEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRDKRIR 118

Query: 345  YAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 404
            YA+EILQKEM+PHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRLDLAG
Sbjct: 119  YAQEILQKEMIPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAG 178

Query: 405  PLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QA 463
            PLL  LFRMLFRKL++DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q 
Sbjct: 179  PLLANLFRMLFRKLSKDVYRYLQKCVEAQKEFNLALAVKHQTITNGLKYSLATGNWGDQK 238

Query: 464  NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 523
             +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEG
Sbjct: 239  KSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEG 298

Query: 524  QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 583
            QACGLVKNLALM  I+VGS + P++EFLEEWG E+ E+ + + +P  TK+FVNG W+G+H
Sbjct: 299  QACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEDNAHSTVP-CTKVFVNGVWMGVH 357

Query: 584  RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 643
            RDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L+++K+
Sbjct: 358  RDPGNLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKK 417

Query: 644  DIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL------ 693
             +  L Q    +D G    W  L+  G +E +D EEEET MISMT  DL  +RL      
Sbjct: 418  HVKWLGQ--GTDDQGSKFLWESLIKTGIVELLDAEEEETVMISMTPEDLETSRLQQSGAD 475

Query: 694  ---HPEEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
               H EE +           + T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMG
Sbjct: 476  PHTHEEEEFDPAARLKAGSNSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMG 535

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMGI++TN+  RMDT+A +L+YPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYN
Sbjct: 536  KQAMGIFLTNFLIRMDTMANILFYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYN 595

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDKLD
Sbjct: 596  QEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVAQLEEFEKPTRDNTLRMKHGTYDKLD 655

Query: 860  DDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLL 917
            +DGL  PG  VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G +DQVL+
Sbjct: 656  EDGLISPGVGVSGEDIIIGKTAPIPPDSEELGQRTRLHTRRDVSTPLKSTENGKIDQVLI 715

Query: 918  TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
            TTN++G +FVKVR+RS+RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NP
Sbjct: 716  TTNSEGQKFVKVRIRSIRIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDIIINP 775

Query: 978  HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1037
            HAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S  L + GYQ RG E MY+
Sbjct: 776  HAIPSRMTIGHLVECLLSKVATLLGNEGDATPFTELTVESVSTYLRQKGYQSRGLEVMYH 835

Query: 1038 GHTGRRLTAMIFL 1050
            GHTGR+L A ++L
Sbjct: 836  GHTGRKLQAQVYL 848


>gi|46277283|gb|AAS86832.1| RNA polymerase II second largest subunit, partial [Rhododendron
            macrophyllum]
          Length = 580

 Score = 1122 bits (2903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/580 (90%), Positives = 557/580 (96%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPLATKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHR+PE+LV+TLR+LRR+VDVNTEVGV+RDIRLKELR+YTD GRCSRPLFIVEKQ+L
Sbjct: 61   WVGIHRNPELLVRTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDCGRCSRPLFIVEKQKL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
             IKK+DI+ALQQRESPE+ GWHDLVAKG+IEY+DTEEEETTMISMTINDL  ARL P++A
Sbjct: 121  QIKKKDILALQQRESPEEVGWHDLVAKGYIEYVDTEEEETTMISMTINDLTSARLCPDDA 180

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 181  YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 240

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            +F+RSYRDEEKKMGTLVKEDFG P+R NTMGMRHGSYDKLDDDG APPGTRV+GEDVIIG
Sbjct: 301  IFYRSYRDEEKKMGTLVKEDFGCPNRENTMGMRHGSYDKLDDDGFAPPGTRVAGEDVIIG 360

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KTTPI+ D+AQGQ +RYTRRDHS  LRHSE+GMVDQVLLTTNADGLRFVK+R+RS+RIPQ
Sbjct: 361  KTTPIAPDDAQGQTARYTRRDHSTCLRHSESGMVDQVLLTTNADGLRFVKMRMRSIRIPQ 420

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGT+GM YTQEDMPWT+EGI PDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421  IGDKFSSRHGQKGTIGMAYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR LT  IFLGPTYYQRL
Sbjct: 481  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTYTIFLGPTYYQRL 540

Query: 1059 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1098
            KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER
Sbjct: 541  KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 580


>gi|410610277|gb|AFV74907.1| RNA polymerase II second largest subunit, partial [Olax imbricata]
          Length = 568

 Score = 1122 bits (2901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/568 (95%), Positives = 562/568 (98%)

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            ACGLVKNLALMVYITVGSAAYPILEFLE+WGTENFEEISPAVIPQATKIFVNGCWVGIHR
Sbjct: 1    ACGLVKNLALMVYITVGSAAYPILEFLEKWGTENFEEISPAVIPQATKIFVNGCWVGIHR 60

Query: 585  DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 644
            DP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+D
Sbjct: 61   DPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD 120

Query: 645  IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 704
            I ALQQRES E+GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV AR++PEEAY +TYT
Sbjct: 121  IQALQQRESAEEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVTARINPEEAYTETYT 180

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP
Sbjct: 181  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 240

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 241  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 300

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
            RDEEKKMGTLVKEDFGRP+R++TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+P++
Sbjct: 301  RDEEKKMGTLVKEDFGRPNRTDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPMA 360

Query: 885  QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
            QDE+QGQ +RY+RRDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
Sbjct: 361  QDESQGQTARYSRRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 420

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT+GMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
Sbjct: 421  SRHGQKGTIGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 480

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD
Sbjct: 481  GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 540

Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            KIHSRGRGPVQILTRQPAEGRSRDGGLR
Sbjct: 541  KIHSRGRGPVQILTRQPAEGRSRDGGLR 568


>gi|40644549|emb|CAD89106.1| RNA polymerase II, second largest subunit [Tephrosia purpurea]
          Length = 550

 Score = 1121 bits (2900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/548 (96%), Positives = 543/548 (99%)

Query: 520  TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 579
            TPEGQACGLVKNLA MVYITVGSAA PILEFLEEWGTENFEEISPAVIPQATKIFVNGCW
Sbjct: 1    TPEGQACGLVKNLAXMVYITVGSAASPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 60

Query: 580  VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 639
            +GIHRDP+MLVKTLR LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+KQRLL
Sbjct: 61   LGIHRDPDMLVKTLRNLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLL 120

Query: 640  IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 699
            IKK+DIIALQQRESPE+GGWHDLV+KGFIEYIDTEEEETTMISMTINDL+QARL+P EAY
Sbjct: 121  IKKKDIIALQQRESPEEGGWHDLVSKGFIEYIDTEEEETTMISMTINDLIQARLNPGEAY 180

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
            +DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY
Sbjct: 181  SDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 240

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL
Sbjct: 241  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 300

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            FFRSYRDEEKKMGTLVKEDF RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK
Sbjct: 301  FFRSYRDEEKKMGTLVKEDFCRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 360

Query: 880  TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            TTPISQ+EAQGQASRYTRRDHSISLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQI
Sbjct: 361  TTPISQEEAQGQASRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQI 420

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAA
Sbjct: 421  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAA 480

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
            HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT+MIFLGPTYYQRLK
Sbjct: 481  HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLK 540

Query: 1060 HMVDDKIH 1067
            HMVDDKIH
Sbjct: 541  HMVDDKIH 548


>gi|46277287|gb|AAS86834.1| RNA polymerase II second largest subunit, partial [Camellia japonica]
          Length = 559

 Score = 1119 bits (2895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/559 (95%), Positives = 551/559 (98%)

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
            KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS AYPILEFLEEWGTENF
Sbjct: 1    KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSXAYPILEFLEEWGTENF 60

Query: 560  EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 619
            EEISPAVIPQATKIFVNGCWVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI
Sbjct: 61   EEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRI 120

Query: 620  YTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETT 679
            YTDYGRCSRPLFIVEKQRLLIKK+DI +LQQRE+PEDGGWHDLVAKG+IEYIDTEEEETT
Sbjct: 121  YTDYGRCSRPLFIVEKQRLLIKKKDIQSLQQRETPEDGGWHDLVAKGYIEYIDTEEEETT 180

Query: 680  MISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
            MISMTINDL+ ARL+PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 181  MISMTINDLITARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 240

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN
Sbjct: 241  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 300

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 859
            QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG PDR+NTMGMRHGSYDKLD
Sbjct: 301  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGCPDRANTMGMRHGSYDKLD 360

Query: 860  DDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTT 919
            DDGLAPPGTRVSGEDVIIGKTTPI+Q++AQG A+RYT+RDHS SLRHSETGMVDQVLLTT
Sbjct: 361  DDGLAPPGTRVSGEDVIIGKTTPIAQEDAQGPAARYTKRDHSTSLRHSETGMVDQVLLTT 420

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
            NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIV PHA
Sbjct: 421  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVYPHA 480

Query: 980  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
            IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH
Sbjct: 481  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 540

Query: 1040 TGRRLTAMIFLGPTYYQRL 1058
            TGRRL AMIFLGPTYYQRL
Sbjct: 541  TGRRLPAMIFLGPTYYQRL 559


>gi|45545329|gb|AAS67512.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Diploschistes muscorum]
          Length = 901

 Score = 1119 bits (2895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/903 (59%), Positives = 682/903 (75%), Gaps = 42/903 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V V+K R  ++  Y+AE+RS  E   R  S+M V+  SR   K  
Sbjct: 1    SEKVLIAQERSAANIVQVYK-RSDDRIPYLAEIRSAVEKGTRLISSMSVKYHSRKDDKK- 58

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            S G  I+ TLPY++ EI + IVFRALG V+D+DIL HIC+D +DTQMME+L+P +EEAFV
Sbjct: 59   SFGSSIKVTLPYVKEEIAVAIVFRALGVVSDEDILNHICFDRRDTQMMEMLKPCIEEAFV 118

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            +Q+++VALD+IGKR   +G  RDKRI++A++I+QKE+LPH+   +  ET+KA++ GY++H
Sbjct: 119  VQDREVALDHIGKRSNALGQPRDKRIRHARDIMQKELLPHISQSEGSETRKAFFLGYMVH 178

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            R+L  ALGRR  DDRDH+G KRLDLAGPL+  LFR LF +LT+DV  Y+QKC++  +D N
Sbjct: 179  RMLQVALGRREPDDRDHFGKKRLDLAGPLMASLFRSLFNRLTKDVLKYLQKCIEGNRDFN 238

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            +   +K+ T+T+GLKYSLATGNW  Q  AA  +AGVSQVLNR T+ASTLSHLRR N+P+G
Sbjct: 239  IALGVKSTTLTNGLKYSLATGNWSEQKKAAQGKAGVSQVLNRYTFASTLSHLRRTNTPLG 298

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YITVGS   PI+EF+ +   
Sbjct: 299  RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPGEPIIEFMVQRNM 358

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E  EE  P   P  TK+FVNG WVG+HRDP  L  T+  LRRR  ++ EV ++RDIR +E
Sbjct: 359  EVLEEYEPTRSPNITKVFVNGVWVGVHRDPAHLYNTVLSLRRRNMISHEVSLIRDIRDQE 418

Query: 617  LRIYTDYGRCSRPLFIVEKQR-------LLIKKRDIIALQQ-RESPED----------GG 658
             +I+TD GR +RPLF+++  +       L++ K  +  L+  RE P D           G
Sbjct: 419  FKIFTDAGRVARPLFVIDNDKRSSRRGELVLSKELVNRLEDDRELPPDLDPDEKKEKYFG 478

Query: 659  WHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLHPEEAYAD------------ 701
            W  LV  G +EY+D EEEET MI+MT  DL     VQA   P E   D            
Sbjct: 479  WEGLVKSGAVEYLDAEEEETVMIAMTPEDLDISRQVQAGYAPPEPSTDQNARFKAPINTN 538

Query: 702  --TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A 
Sbjct: 539  VHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMAN 598

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSL
Sbjct: 599  ILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSL 658

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            F+R+Y ++EK++G  + E F +P RS T+ ++HG+Y+KLDDDGL  PG RVSGEDVIIGK
Sbjct: 659  FYRAYVEQEKRVGMSLVEQFEKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGK 718

Query: 880  TTPISQDEAQ-GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            T PI+ D  + GQ ++ +++RD S  LR +E G+VD+VLLTTN +GL+FVKVR+R+ +IP
Sbjct: 719  TAPIAPDTDELGQRTKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIP 778

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD+I+NPHAIPSRMTI  LIEC + KV
Sbjct: 779  QIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQLSKV 838

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            ++  G EGDATPFTDVTVD++S+ L + GYQ RGFE MYNGHTGR+L A +F GPTYYQR
Sbjct: 839  SSLRGFEGDATPFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQR 898

Query: 1058 LKH 1060
            L+H
Sbjct: 899  LRH 901


>gi|56694378|gb|AAW22929.1| RNA polymerase II second largest subunit [Musa velutina]
          Length = 561

 Score = 1119 bits (2894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/562 (93%), Positives = 552/562 (98%), Gaps = 1/562 (0%)

Query: 524  QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 583
            QACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVIPQ+TKIFVNGCWVGIH
Sbjct: 1    QACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIH 60

Query: 584  RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 643
            R+P++LVKTLR+LRR++DVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+
Sbjct: 61   RNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 120

Query: 644  DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 703
            DI ALQQRE+PE+G WHDLV+KGFIEYIDTEEEETTMISMTINDLV AR +PEEAY++TY
Sbjct: 121  DIRALQQRETPEEG-WHDLVSKGFIEYIDTEEEETTMISMTINDLVNARQNPEEAYSETY 179

Query: 704  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYY
Sbjct: 180  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 239

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE SVIMNQSSIDRGFFRSLFFRS
Sbjct: 240  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEVSVIMNQSSIDRGFFRSLFFRS 299

Query: 824  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 883
            YRDEEKKMGTLVKEDFGRP+R NTMGMRHGSY+KLDDDGLAPPGTRVSGEDVIIGKT+PI
Sbjct: 300  YRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYEKLDDDGLAPPGTRVSGEDVIIGKTSPI 359

Query: 884  SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
             QD+AQGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKF
Sbjct: 360  PQDDAQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKF 419

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK
Sbjct: 420  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 479

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVD
Sbjct: 480  EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVD 539

Query: 1064 DKIHSRGRGPVQILTRQPAEGR 1085
            DKIHSRGRGPVQILTRQPAEGR
Sbjct: 540  DKIHSRGRGPVQILTRQPAEGR 561


>gi|410610275|gb|AFV74906.1| RNA polymerase II second largest subunit, partial [Thesium chinense]
          Length = 566

 Score = 1118 bits (2892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/566 (95%), Positives = 559/566 (98%)

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR
Sbjct: 1    ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 60

Query: 585  DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 644
            DP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+D
Sbjct: 61   DPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD 120

Query: 645  IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 704
            I  LQQRE+ E+GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV ARL+PEEAY++ YT
Sbjct: 121  IQVLQQRETAEEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEAYSEAYT 180

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP
Sbjct: 181  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 240

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 241  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 300

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
            RDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+
Sbjct: 301  RDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIA 360

Query: 885  QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
            QDE+QGQ+SRYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
Sbjct: 361  QDESQGQSSRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 420

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
Sbjct: 421  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 480

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDD
Sbjct: 481  GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDD 540

Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGG 1090
            KIHSRGRGPVQILTRQPAEGRSRDGG
Sbjct: 541  KIHSRGRGPVQILTRQPAEGRSRDGG 566


>gi|410610271|gb|AFV74904.1| RNA polymerase II second largest subunit, partial [Viscum
            alniformosanae]
          Length = 569

 Score = 1117 bits (2889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/569 (94%), Positives = 561/569 (98%)

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ+TKIFVNGCWVGIHR
Sbjct: 1    ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQSTKIFVNGCWVGIHR 60

Query: 585  DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 644
            DP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+D
Sbjct: 61   DPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKD 120

Query: 645  IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 704
            I ALQQR++ E+GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV  RL+PE+AY+ TYT
Sbjct: 121  IQALQQRDTAEEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSLRLNPEDAYSRTYT 180

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP
Sbjct: 181  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 240

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS+IMNQSS+DRGFFRSLFFRSY
Sbjct: 241  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSIIMNQSSVDRGFFRSLFFRSY 300

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
            RDEEKKMGTL+KEDFGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+
Sbjct: 301  RDEEKKMGTLIKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIA 360

Query: 885  QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
            QDE+QGQ+ RYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
Sbjct: 361  QDESQGQSFRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 420

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
Sbjct: 421  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 480

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD
Sbjct: 481  GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 540

Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            KIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 541  KIHSRGRGPVQILTRQPAEGRSRDGGLRF 569


>gi|40644998|emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
          Length = 551

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/551 (95%), Positives = 543/551 (98%)

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQ+TKIFVN
Sbjct: 1    PAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVN 60

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            GCWVGIHR+P++LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQ
Sbjct: 61   GCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQ 120

Query: 637  RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE 696
            RLLIKKRDI ALQ RESPEDGGWHDLV+KGFIEY+DTEEEETTMISMTINDL+ ARL+PE
Sbjct: 121  RLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLISARLNPE 180

Query: 697  EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 756
            EAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDT
Sbjct: 181  EAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDT 240

Query: 757  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 816
            LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF
Sbjct: 241  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 300

Query: 817  RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 876
            RSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI
Sbjct: 301  RSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 360

Query: 877  IGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 936
            IGKTTPISQD++QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRI
Sbjct: 361  IGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRI 420

Query: 937  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 996
            PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK
Sbjct: 421  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 480

Query: 997  VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ
Sbjct: 481  VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 540

Query: 1057 RLKHMVDDKIH 1067
            RLKHMVDDKIH
Sbjct: 541  RLKHMVDDKIH 551


>gi|3002941|gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphaea odorata]
          Length = 555

 Score = 1114 bits (2881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/556 (94%), Positives = 545/556 (98%), Gaps = 1/556 (0%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQAT
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQAT 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLF
Sbjct: 61   KIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVEKQRLLIKK+DI ALQ RE+ E+G WHDLVAKGFIEYIDTEEEETTMISMTI+DLV A
Sbjct: 121  IVEKQRLLIKKKDIRALQLRETQEEG-WHDLVAKGFIEYIDTEEEETTMISMTISDLVSA 179

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            RL+PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180  RLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240  LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKT+PISQD++QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+
Sbjct: 360  GEDVIIGKTSPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRM 419

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RSVRIPQIGDKFSSRHGQKGTVGMTY QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420  RSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLG
Sbjct: 480  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLG 539

Query: 1052 PTYYQRLKHMVDDKIH 1067
            PTYYQRLKHMVDDKIH
Sbjct: 540  PTYYQRLKHMVDDKIH 555


>gi|89090016|gb|AAO64654.3| RNA polymerase II subunit RPB2, partial [Dacrymyces chrysospermus]
          Length = 870

 Score = 1112 bits (2875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/873 (61%), Positives = 668/873 (76%), Gaps = 29/873 (3%)

Query: 216  FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIP 275
              K QP+  +++AE+RS  E   +  S + ++M  R   K  S+G  +RA LPYIR +IP
Sbjct: 1    LSKAQPSPISHLAEIRSQVEKGGKQISLLQIKMTHRNLEK--STGSLMRAQLPYIRNDIP 58

Query: 276  IIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATV 335
            I++VFRALG V D+D+LEHICYD  D  M+E+L+P +EEAFVIQ+++VALDYIG+RG T 
Sbjct: 59   IVVVFRALGIVPDRDVLEHICYDPDDHAMLEMLKPCIEEAFVIQDREVALDYIGRRGTTT 118

Query: 336  GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHY 395
            G++R+KR++YA+EILQKEMLPH+ T +  E+KKAY+FGY++HRL+L AL RR  DDRDH+
Sbjct: 119  GLSREKRLRYAQEILQKEMLPHISTQEGAESKKAYFFGYMVHRLVLAALDRRELDDRDHF 178

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFR+LT+DV  Y+QKCV+  ++ N+  A+K  TIT+GLKYSL
Sbjct: 179  GKKRLDLAGPLLATLFRMLFRRLTKDVYRYMQKCVETHREFNINAAVKPATITNGLKYSL 238

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q      +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+A+PRQLHN  WGM
Sbjct: 239  ATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIARPRQLHNHHWGM 298

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +       GQACGLVKNLALM  I+VG+ + P++EFLEEWG E   E +   +  ATK+F
Sbjct: 299  VXXXXXXXGQACGLVKNLALMACISVGTLSQPVVEFLEEWGLEPLGERTDEPL-TATKVF 357

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV- 633
            VNG W+GIHRDP+ LV T+R LRR   +++E+ VVRDIR +ELR+YTD GR  RPLFIV 
Sbjct: 358  VNGVWMGIHRDPQHLVNTVRTLRRSDGISSEISVVRDIRERELRLYTDAGRVCRPLFIVN 417

Query: 634  -EKQRLLIKKRDIIALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
             + Q L+I KR+I  L  RE P +     GW  LV  G +E +D EEEET MI+MT  DL
Sbjct: 418  EQTQNLVISKREINWLHAREKPGEKDKVYGWSQLVTSGMVELLDAEEEETVMIAMTPQDL 477

Query: 689  VQARL---------HPEEA--------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
             Q++          +PE A        + + ++HCEIHPS+ILG+CASIIPFPDHNQSPR
Sbjct: 478  DQSKTKRGTGYVSNNPENAAVRIKSTVHHEHWSHCEIHPSMILGICASIIPFPDHNQSPR 537

Query: 732  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
            NTYQSAMGKQAMGIY+TN+Q RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVA
Sbjct: 538  NTYQSAMGKQAMGIYLTNFQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVA 597

Query: 792  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 851
            I CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EK  G +  E+F +P R  T+ M+
Sbjct: 598  ILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYTDMEKTTGIVPVEEFEKPHRDTTVRMK 657

Query: 852  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSET 909
            HG+YDKL+ DGL  PG  ++GED+IIGKT P+  D E  GQ +R +TRRD S  L+ +E 
Sbjct: 658  HGTYDKLEADGLVAPGIGINGEDIIIGKTAPLPPDSEELGQRTRTHTRRDVSTPLKSTEN 717

Query: 910  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
            G+VDQVL++TN  G++FVKVR+RS RIPQIGDKF+SRHGQKGT+GMTY QEDMP+   GI
Sbjct: 718  GIVDQVLISTNESGVKFVKVRIRSTRIPQIGDKFASRHGQKGTIGMTYRQEDMPFAGNGI 777

Query: 970  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1029
            TPDII+NPHAIPSRMTIG L+EC++ K+A  +G EGDATPFTD+TV+++S  L   GYQ 
Sbjct: 778  TPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVESVSSLLRGKGYQQ 837

Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            RG E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 838  RGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 870


>gi|120561273|gb|ABM27021.1| RNA polymerase II second largest subunit, partial [Monoblepharis
            macrandra]
          Length = 879

 Score = 1111 bits (2873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/885 (58%), Positives = 668/885 (75%), Gaps = 28/885 (3%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKV+IAQE+M+ N VY+F   +P   +  AE+RS  E   R  S+  ++ + R  +  G
Sbjct: 1    SEKVIIAQERMAANQVYIFTSNRPGGVSIQAEIRSQMEKGARKISSCAIKRMPRKRSTTG 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
                Y  +T+P +++++P++++FRALG ++D++ILEH CYDF D+QM+E+LRPS+EE   
Sbjct: 61   QMNLY--STVPLLKSDVPVVVLFRALGVLSDREILEHCCYDFDDSQMLEMLRPSIEEGNE 118

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ ++VALD+IGKR  T+G++RDKRI +A +ILQKE+LPH+G     E +KA++ GY+IH
Sbjct: 119  IQEREVALDFIGKRAQTMGLSRDKRIAFAAQILQKELLPHIGIQARSEGRKAWFLGYMIH 178

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLLCAL RR  DDRDH+G KRLDLAGPL+  LFRMLFR+LT+D+   ++K V++ ++ N
Sbjct: 179  RLLLCALERREADDRDHFGKKRLDLAGPLMANLFRMLFRRLTQDISRALRKAVESHREFN 238

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            +  A++ + IT GL++SLATGNWG Q     TRAGVSQVL+R TYASTLSHLRRLNSPIG
Sbjct: 239  MVSAVQHQIITRGLQFSLATGNWGDQRKMMQTRAGVSQVLSRYTYASTLSHLRRLNSPIG 298

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            REGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM YI+VGS   P+++FL+EW  
Sbjct: 299  REGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSPVEPLVDFLQEWTL 358

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E+ EE+S   I    K+F+NG W+G+HR+PE L++  R  RR++ ++ EV  V D+R KE
Sbjct: 359  EDLEELSADDIRDKCKVFLNGVWIGVHRNPEELMRIFRDYRRKISISAEVSAVWDVREKE 418

Query: 617  LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEE 676
            LR  +D GR  RPLF+V   +L I+K  I  LQ     +   W DLV+ G +EY+DT+EE
Sbjct: 419  LRFLSDAGRICRPLFVVNNMQLEIRKGHIAKLQN----QTWKWGDLVSNGLVEYVDTDEE 474

Query: 677  ETTMISMTINDL-------------------VQARLHPEEAYADTYTHCEIHPSLILGVC 717
            ETTMI+M+ +DL                   V  RL         +TH EIHPS+ILG+C
Sbjct: 475  ETTMIAMSFDDLRDSMIAAQGEEVMARSDWEVTERLRGGTVLTRYWTHAEIHPSMILGIC 534

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+Q RMDT++ +LYYPQKPLVTTRAMEHL
Sbjct: 535  ASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFQLRMDTMSNILYYPQKPLVTTRAMEHL 594

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
            HFR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSL++R+Y D EKK+G    E
Sbjct: 595  HFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLYYRAYMDSEKKLGIQQAE 654

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ--DEAQGQASRY 895
             F +P R  T+ MR  SYD L+DDG   PGTRVS  D++IGKT P+ +  +E   + +R+
Sbjct: 655  TFEKPVRDATIKMRGTSYDTLEDDGFVAPGTRVSDGDILIGKTVPLPKGSEELGARTARH 714

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
             ++D S ++R +ETG++DQV+L+T++ G   VKVR+RS RIPQ+GDKF+SRHGQKGTVG+
Sbjct: 715  EKKDASTTMRGAETGIIDQVMLSTDSQGQNMVKVRIRSTRIPQMGDKFASRHGQKGTVGI 774

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1015
            TY  EDMP+T EGI PDII+NPHAIPSRMTIG L+EC++GKV+A  G+EGDATPF + TV
Sbjct: 775  TYRHEDMPFTAEGICPDIIINPHAIPSRMTIGHLVECLLGKVSALAGEEGDATPFMETTV 834

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
              IS AL   GYQ RG+E +YNGHTGR+L A IFLGPTYYQRLKH
Sbjct: 835  GAISSALKGLGYQQRGYEVLYNGHTGRKLQAQIFLGPTYYQRLKH 879


>gi|83415493|gb|ABC17954.1| RNA polymerase II second largest subunit, partial [Phycomyces
           blakesleeanus]
          Length = 801

 Score = 1110 bits (2871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/805 (64%), Positives = 646/805 (80%), Gaps = 27/805 (3%)

Query: 198 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
           SEKVLIAQE+M+TN VYVF K  P+   Y AE+RS  E  ++  S ++++M+  ++ +GG
Sbjct: 1   SEKVLIAQERMATNTVYVFAKAPPSNVQYTAEIRSQPEKGSKNASPLYIKMMRASTDRGG 60

Query: 258 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
           + GQ IRATLPYIR++IPI+IVFRALG VAD+D+LEHICYD  D +M+E+L+PS+EEAFV
Sbjct: 61  T-GQCIRATLPYIRSDIPIVIVFRALGQVADRDVLEHICYDRNDYEMLEMLKPSIEEAFV 119

Query: 318 IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
           IQ+Q VALD+IGKRG TVG TR++R KYA EILQKE+LPHVGT    ET+K+Y+FGY+IH
Sbjct: 120 IQDQDVALDFIGKRGTTVGATRERRTKYATEILQKELLPHVGTAYKTETRKSYFFGYMIH 179

Query: 378 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
           RLLL AL RR  DDRDHYG KR+DLAGPL+ GLFR+LF+KLT+DV  Y+QKC+++ ++ N
Sbjct: 180 RLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRLLFKKLTKDVAKYLQKCIESSREFN 239

Query: 438 LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
           L  A+K+ TIT+GLKYSLATGNWG Q  A   RAGVSQVLNR T+ASTLSHLRR N+PIG
Sbjct: 240 LTLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIG 299

Query: 497 REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
           R+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YI+VGSAA P++ FLEEW  
Sbjct: 300 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSAATPLIMFLEEWAM 359

Query: 557 ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
           EN EE+S   IP ATK+FVNG W+G+HRDP  LV +L+ +RR VD++ EV +VRDIR KE
Sbjct: 360 ENLEELSANNIPDATKVFVNGVWIGVHRDPGELVNSLKSMRRSVDISPEVSIVRDIREKE 419

Query: 617 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEYIDTEE 675
           LR+YTD GRC RPLF+V+ Q+L + +  +  LQ    PED   W D+++ G +EY+D +E
Sbjct: 420 LRMYTDAGRCCRPLFLVQDQQLRLTRDHLSRLQ---DPEDSYRWQDMISDGIVEYVDADE 476

Query: 676 EETTMISMTINDLVQARLHPE-------------------EAYADTYTHCEIHPSLILGV 716
           EET MI MT  DLV+AR+  +                    AY+ T+THCEIHPS+ILG+
Sbjct: 477 EETAMICMTPEDLVEARMAAQFGAPLQEERDLASRVKSQTGAYSHTWTHCEIHPSMILGI 536

Query: 717 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
           CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ RMDT+A +LYYPQKPL TTR+ME 
Sbjct: 537 CASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQTRMDTMANILYYPQKPLTTTRSMEF 596

Query: 777 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
           L FR+LPAG NA+VAI CYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D EKK G +  
Sbjct: 597 LRFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDAEKKAGMMFM 656

Query: 837 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQASR- 894
           E+F +P R +T+ ++HG+Y+KL++DGL  PGTRVSG+D+IIGKT PI ++ E  GQ ++ 
Sbjct: 657 EEFEKPTRDSTLRLKHGTYEKLEEDGLIAPGTRVSGDDIIIGKTAPIPAESEELGQRTQT 716

Query: 895 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
           + + D S  LR +ETG+VDQV+LTTN DGL+FVKVRVRS R+PQ+GDKF+SRHGQKGT+G
Sbjct: 717 HNKHDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIG 776

Query: 955 MTYTQEDMPWTVEGITPDIIVNPHA 979
           MTY QED P++ EGITPD+I+NPHA
Sbjct: 777 MTYRQEDFPFSAEGITPDLIINPHA 801


>gi|6606097|gb|AAF19061.1|AF107789_1 DNA-dependent RNA polymerase II RPB140 [Neurospora crassa]
          Length = 903

 Score = 1108 bits (2867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/903 (59%), Positives = 676/903 (74%), Gaps = 40/903 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK      +Y AE+RS  E  +R  S++ +R+ ++     G
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKADQNKG 60

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
                 +  TLPY++ E+ + IVFRALG V+D+DIL HICYD +D+QM+E LRP +EEAF 
Sbjct: 61   RLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEAFC 120

Query: 318  IQNQQVALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            IQ+++VALDYIGKRG  + G+ R+ RIK AKE+LQKE+LPH+   + CET+KA++ GY++
Sbjct: 121  IQDREVALDYIGKRGNGSTGINRNGRIKAAKEMLQKELLPHISQAEGCETRKAFFLGYMV 180

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            H+LL C LGRR  DDRDH+G KRLDLAGPLL  LFR + R+LT+D+  Y+++CVD  K  
Sbjct: 181  HKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHF 240

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            +L   IKA T+T+GLKYSLATGNWG Q  A  + AGVSQVLNR T++STLSHLRR N+PI
Sbjct: 241  SLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPI 300

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM +++VG+ A PI+EF+    
Sbjct: 301  GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARN 360

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             E  EE  P   P ATK+FVNG WVG+H+DP+ LV  ++ LRR+  ++ EV +VRDIR +
Sbjct: 361  MEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQNLRRKNIISFEVSLVRDIRDR 420

Query: 616  ELRIYTDYGRCSRPLFIVE----------KQRLLIKKRDIIALQQRES----PED-GGWH 660
            E +I++D GR  RPLF+VE          K +L++ K  I  L+Q +      ED  GW 
Sbjct: 421  EFKIFSDAGRVMRPLFVVEQEDNSESGVEKGQLILTKEHIRRLEQDKELAKYHEDYFGWQ 480

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP------EEAYAD------------- 701
             L+  G IEY+D EEEET MI MT  DL   R H       E+  A+             
Sbjct: 481  GLLESGAIEYLDAEEEETAMICMTPEDLDTYRQHKFKGREFEDDAANRGNSRIKTKFNPT 540

Query: 702  --TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
               YTHCEIHPS++LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TNY  RMDT+A 
Sbjct: 541  THMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMAN 600

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSL
Sbjct: 601  ILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSL 660

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            FFRSY D EK++G  + E F +PDRSNT+  +HG+YDKL++DG+  PG RV+G+D+IIGK
Sbjct: 661  FFRSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGK 720

Query: 880  TTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            T+PI+ D  + GQ  +++ +RD S  LR +E+G+VD V  TTN DGLR+VKVRVR+ +IP
Sbjct: 721  TSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTKIP 780

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTI  LIEC++ KV
Sbjct: 781  QIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKV 840

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
             A  G EGDATPFTDVTVD++S  L + GYQ RGFE MY+GHTG++L A +F GPTYYQR
Sbjct: 841  GALKGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPTYYQR 900

Query: 1058 LKH 1060
            L+H
Sbjct: 901  LRH 903


>gi|45545337|gb|AAS67516.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Neofusicoccum mangiferae]
          Length = 910

 Score = 1106 bits (2860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/914 (59%), Positives = 677/914 (74%), Gaps = 55/914 (6%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VF+KRQ +   ++AE+RS  E  +R  S+M +++  +      
Sbjct: 1    SEKVLIAQERSAANIVQVFRKRQ-SPTPWIAEIRSAVEKGSRLLSSMTLKLYEKPQLWKE 59

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
              G  + ATLPY++ +IPI IVFRALG V+D+DI+ HIC+D  DTQ+ME +RPS+EE+ +
Sbjct: 60   GQGACLYATLPYVKADIPIPIVFRALGIVSDEDIISHICFDKNDTQIMEAIRPSIEESVL 119

Query: 318  IQNQQVALDYIGKRGA--TVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 375
            IQ++  ALD+IG+RG+  + G T+ +R+K A++I+QKE LPH+   +  ETKKA++ GY+
Sbjct: 120  IQDRVSALDFIGRRGSNPSTGGTKRERVKLARDIIQKEFLPHISQAEGSETKKAFFLGYM 179

Query: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 435
            I+RLL C LGRR EDDRDH+G KRLDLAGPLL  LFR LF KLTRDV  Y++KC++ G+ 
Sbjct: 180  IYRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRSLFLKLTRDVYNYLKKCIEAGRP 239

Query: 436  VNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
             +LQ A+K  TIT+GLKYSLATGNWG Q  AA ++AGVSQVLNR TY+STLSHLRR N+P
Sbjct: 240  FSLQSAVKQGTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTYSSTLSHLRRTNTP 299

Query: 495  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
            IGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  +TVGS   PI +F+ + 
Sbjct: 300  IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCNVTVGSDVTPIQDFMTQR 359

Query: 555  GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
              E  EE  P V P ATKIF+NG WVG+HRDP  LV  +++LRR   ++ E+ ++RD+R 
Sbjct: 360  NMELLEEYEPNVSPNATKIFINGVWVGVHRDPTQLVSVVKKLRRDGTLSAEMSLIRDVRD 419

Query: 615  KELRIYTDYGRCSRPLFIVE-------KQRLLIKKR-----------DIIALQQRESPED 656
            +E +I+TD GR  RPLFI++       K  L++ +            D+  +   E  E 
Sbjct: 420  REFKIFTDAGRVCRPLFIIDDDPFSPNKGNLVLAREHIDKLEADQEIDVSGMNDDERDEK 479

Query: 657  G-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH--------------------P 695
              GW  L+  G +EY+D EEEE  MI+MT +DL   R H                    P
Sbjct: 480  RYGWKGLLQSGVVEYMDAEEEEVAMITMTPDDL---RAHHRARQGIIDEEDEESKRNRDP 536

Query: 696  EEAYADT-------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
             E            YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +T
Sbjct: 537  HERVVPAPNPSVKQYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVCLT 596

Query: 749  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
            NY+ RMDT+  VLYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQ
Sbjct: 597  NYELRMDTMVNVLYYPQKPLATTRSMEYLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQ 656

Query: 809  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
            SSIDRG FRSLF+RSY D+EKK+G  V E F +P RS+TM ++HG+YDKLDDDG+  PG 
Sbjct: 657  SSIDRGLFRSLFYRSYTDQEKKVGMAVVEQFEKPLRSDTMRLKHGTYDKLDDDGVVAPGV 716

Query: 869  RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
            RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR +E G+VD VLLTTN+DGL+F
Sbjct: 717  RVSGEDIIIGKTAPIAPDAEELGQRTKMHIKRDVSTPLRSTENGIVDSVLLTTNSDGLKF 776

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
            VKVR R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+TPDII+NPHAIPSRMTI
Sbjct: 777  VKVRTRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGLTPDIIINPHAIPSRMTI 836

Query: 987  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
              LIEC++ KV A  G+EGDATPFTDVTV  +S  L + GYQ RGFE MYNGHTG++LTA
Sbjct: 837  AHLIECLLSKVGALRGQEGDATPFTDVTVTQVSSLLREHGYQSRGFEVMYNGHTGKKLTA 896

Query: 1047 MIFLGPTYYQRLKH 1060
             +FLGPTYYQRL+H
Sbjct: 897  QVFLGPTYYQRLRH 910


>gi|40644545|emb|CAD88975.1| DNA-directed RNA polymerase subunit B [Myrtus communis]
          Length = 572

 Score = 1105 bits (2859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/566 (95%), Positives = 549/566 (96%), Gaps = 2/566 (0%)

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALMVY+TVGSAAYPILEFLEEWGTENFEEISP VIPQATKIFVN
Sbjct: 1    PAETPEGQACGLVKNLALMVYVTVGSAAYPILEFLEEWGTENFEEISPVVIPQATKIFVN 60

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            GCWVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ
Sbjct: 61   GCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 120

Query: 637  RLLIKKRDIIALQQRE-SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP 695
            RLLIKK+DI ALQQRE  P+D GWH+LVAKGFIEYIDTEEEETTMISMTINDLVQARL  
Sbjct: 121  RLLIKKKDIHALQQREEGPDDVGWHNLVAKGFIEYIDTEEEETTMISMTINDLVQARLXX 180

Query: 696  EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
            E AY++TYTHCEIHPSLILGVCASIIPFPDHNQS RNTYQSAMGKQAMGIYVTNYQFRMD
Sbjct: 181  EXAYSETYTHCEIHPSLILGVCASIIPFPDHNQSXRNTYQSAMGKQAMGIYVTNYQFRMD 240

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF
Sbjct: 241  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 300

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDV
Sbjct: 301  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 360

Query: 876  IIGKTTPIS-QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 934
            IIGKTTPI+      G ASRY+RRDHSISLRHSETG+VDQVLLTTNADGLRFVKVRVRSV
Sbjct: 361  IIGKTTPIAXXXXXXGXASRYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSV 420

Query: 935  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 994
            RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI CIM
Sbjct: 421  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIXCIM 480

Query: 995  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1054
            GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY
Sbjct: 481  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 540

Query: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQ 1080
            YQRLKHMVDDKIHSRGRGPVQILTRQ
Sbjct: 541  YQRLKHMVDDKIHSRGRGPVQILTRQ 566


>gi|46277251|gb|AAS86816.1| RNA polymerase II second largest subunit, partial [Cycas revoluta]
          Length = 567

 Score = 1104 bits (2855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/568 (92%), Positives = 545/568 (95%), Gaps = 2/568 (0%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPNATKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHRDP++LVKTLR+LRR+VDVNTEVGVVRDIRL ELR+YTDYGRCSRPLFIVEKQRL
Sbjct: 61   WVGIHRDPDLLVKTLRQLRRQVDVNTEVGVVRDIRLSELRLYTDYGRCSRPLFIVEKQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK DI  LQQRESPE+G WHDLVAKGFIEY+DTEEEETTMISMTI+DLV AR  P  +
Sbjct: 121  LIKKSDIRTLQQRESPEEG-WHDLVAKGFIEYVDTEEEETTMISMTISDLVNARNSPSTS 179

Query: 699  YADT-YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
             +   YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTL
Sbjct: 180  SSIVKYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTL 239

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR
Sbjct: 240  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLF+RSYRDEEK+MGTLVKE+FGRP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVII
Sbjct: 300  SLFYRSYRDEEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVII 359

Query: 878  GKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            GKTTPI+QDEA GQA+RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIP
Sbjct: 360  GKTTPITQDEAGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIP 419

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV
Sbjct: 420  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 479

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQR
Sbjct: 480  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQR 539

Query: 1058 LKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            LKHMVDDKIHSRGRGPVQILTRQPAEGR
Sbjct: 540  LKHMVDDKIHSRGRGPVQILTRQPAEGR 567


>gi|67810699|gb|AAY82002.1| RNA polymerase II second largest subunit [Selaginella erythropus]
          Length = 581

 Score = 1104 bits (2855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/581 (89%), Positives = 549/581 (94%), Gaps = 1/581 (0%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALM YITVGSAA PIL FLEEW TENFEEISPAVIP +T
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILVFLEEWSTENFEEISPAVIPNST 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNG WVGIHR+PE LVKTLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLF
Sbjct: 61   KIFVNGAWVGIHREPEHLVKTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVEKQRLLIKK DI ALQQ+E+ E+G WH+LVAKGFIEY+DTEEEETTMISMTI DLV A
Sbjct: 121  IVEKQRLLIKKSDIRALQQKEAGENG-WHELVAKGFIEYVDTEEEETTMISMTILDLVNA 179

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            RL+P+EAY+DTYTHCEIHPS+ILGVC SIIPFPDHNQSPRNTYQSAMGKQAMGI+VTNYQ
Sbjct: 180  RLNPDEAYSDTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIHVTNYQ 239

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240  LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRS+F+RSYRDEEKK GTLVKE+F RP+R  T GMRHGSYDKLDDDG+APPGTRVS
Sbjct: 300  DRGFFRSIFYRSYRDEEKKAGTLVKEEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVS 359

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKTTP++QDE   QA RYT+RD S  LRHSE+GM+DQVLLTTNADGLRFVK RV
Sbjct: 360  GEDVIIGKTTPVTQDETSTQAQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKTRV 419

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RS+RIPQIGDKFSSRHGQKGT+GMTYTQEDMP+T EGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420  RSIRIPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            CIMGKVAA MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL AMIF+G
Sbjct: 480  CIMGKVAALMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLNAMIFIG 539

Query: 1052 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG R
Sbjct: 540  PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGXR 580


>gi|6606095|gb|AAF19060.1|AF107788_1 DNA-dependent RNA polymerase II RPB140 [Pichia kudriavzevii]
          Length = 905

 Score = 1103 bits (2854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/905 (58%), Positives = 679/905 (75%), Gaps = 55/905 (6%)

Query: 204  AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS--RTSAKGGSSGQ 261
            AQE+ S N V VFKK   +  ++VAE+RS  E  +R  S++ V++ +   +S K G  G+
Sbjct: 1    AQERSSANIVQVFKKSGVSPISHVAEIRSALEKGSRLISSIQVKLSTGGASSFKAGGVGR 60

Query: 262  YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ 321
             I+ TLPYI+T++PI+IVFRALG + D DIL+HICYD  D QM+E+L+P +EE F+IQ+Q
Sbjct: 61   SIKTTLPYIKTDVPIVIVFRALGVIEDGDILQHICYDDDDWQMLEMLKPCIEEGFLIQSQ 120

Query: 322  QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLL 381
            +VALDYIG+RG  VG+ R++RI++AK+ILQ+E LPH+      ET KAY+FGYII+RLLL
Sbjct: 121  EVALDYIGRRGNAVGIKRERRIQFAKDILQREFLPHISQDGGHETNKAYFFGYIINRLLL 180

Query: 382  CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA 441
            CAL R+ +DDRDH+G KRLDLAGPLL  LFR+LFRKL+RD+  Y+Q+C+++G+D N+  A
Sbjct: 181  CALERKEQDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRYMQRCIEHGEDFNIVSA 240

Query: 442  IKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 500
            +K+ TITSGLKYSLATGNWG Q  A  ++AGVSQVLNR TY+STLSHLRR N+PIGR+GK
Sbjct: 241  VKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGK 300

Query: 501  LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
            LAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGSA+ PI   LEEWG E   
Sbjct: 301  LAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSASEPITYLLEEWGLEPIS 360

Query: 561  EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIY 620
            +  P     +T++F+NG WVG HRDP MLV T+R+LRR   +++EV ++RDIR +E +I+
Sbjct: 361  DYDPQEHKLSTRVFLNGNWVGTHRDPGMLVDTMRQLRRSGTISSEVSLIRDIREREFKIF 420

Query: 621  TDYGRCSRPLFIVE-------KQRLLIKK---RDIIALQQRESPEDG------------- 657
            TD GR  RPLFIV+       K  L + K   R I+  +  E P+D              
Sbjct: 421  TDAGRVYRPLFIVDDDPDSENKGGLKLTKEHCRKILDREVEEIPQDDEFDENGEPLEPLQ 480

Query: 658  ---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE----------------- 697
               GW  L+++G +EY+D EEEET +I+M+  DL     + E+                 
Sbjct: 481  RIYGWESLLSEGIVEYLDAEEEETVLIAMSSEDLSFNNQNGEDDEHMNQDHDENGNLIQS 540

Query: 698  -------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 750
                     + ++THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY
Sbjct: 541  DKRIKSHINSHSFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNY 600

Query: 751  QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 810
              RMDT+A +LYYPQKPL  T++ME L FR+LPAG NAIVAI CYSGYNQEDS+IMNQSS
Sbjct: 601  NVRMDTMANILYYPQKPLAKTQSMEFLKFRELPAGQNAIVAICCYSGYNQEDSMIMNQSS 660

Query: 811  IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 870
            IDRG FRSLFFRSY D+E++ G  V E+F +P RSNT+G + G+Y+KLDDDGL  PG RV
Sbjct: 661  IDRGLFRSLFFRSYMDQERRNGISVVEEFEKPMRSNTLGFKAGTYEKLDDDGLISPGVRV 720

Query: 871  SGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 928
            SG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN++GLRFVK
Sbjct: 721  SGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRATESGIVDQVLLTTNSEGLRFVK 780

Query: 929  VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
            VR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMT+  
Sbjct: 781  VRMRTTKVPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGIVPDLIINPHAIPSRMTVAH 840

Query: 989  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 1048
            LIEC++ KVA+  G EGDATPFTD+TVD +SK L + GYQ RGFE MYNGHTG++L A +
Sbjct: 841  LIECLLSKVASLRGYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVMYNGHTGKKLMAQV 900

Query: 1049 FLGPT 1053
            F GPT
Sbjct: 901  FFGPT 905


>gi|46277259|gb|AAS86820.1| RNA polymerase II second largest subunit, partial [Trochodendron
            aralioides]
          Length = 547

 Score = 1100 bits (2844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/548 (94%), Positives = 537/548 (97%), Gaps = 1/548 (0%)

Query: 520  TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 579
            TPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGCW
Sbjct: 1    TPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPNATKIFVNGCW 60

Query: 580  VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 639
            VGIHR+PE LVKTLR+LRRRVDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLL
Sbjct: 61   VGIHRNPEFLVKTLRQLRRRVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLL 120

Query: 640  IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 699
            IKK+DI ALQQRESPE GGWHDLVAKG+IEY+DTEEEETTMISMTINDL+ A+++PEEAY
Sbjct: 121  IKKKDIQALQQRESPE-GGWHDLVAKGYIEYVDTEEEETTMISMTINDLITAKVNPEEAY 179

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
            ++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAY
Sbjct: 180  SETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAY 239

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSL
Sbjct: 240  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSL 299

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            FFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK
Sbjct: 300  FFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 359

Query: 880  TTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            TTPI+QDE+QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQI
Sbjct: 360  TTPIAQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQI 419

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA
Sbjct: 420  GDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 479

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
            HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK
Sbjct: 480  HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 539

Query: 1060 HMVDDKIH 1067
            HMVDDKIH
Sbjct: 540  HMVDDKIH 547


>gi|46142986|gb|AAS80336.1| RNA polymerase II [Gibberella moniliformis]
          Length = 973

 Score = 1099 bits (2842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/976 (55%), Positives = 695/976 (71%), Gaps = 82/976 (8%)

Query: 97  LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV------------------IK 138
           +S+P M+E+DG    L P   R RNLTY+AP Y+ +TK+V                   +
Sbjct: 1   VSRPSMSETDGTVTNLLPYECRDRNLTYAAPTYLKITKKVSVAVDKEVPLHEMDDEQQAE 60

Query: 139 KGHDGEEVT---------------ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
               GE  T               E +    +FIGK+PIM++S  C L  +S++DL  L 
Sbjct: 61  YKRTGENPTKLVWEVEEDAGSIKAEDEPSEMIFIGKMPIMVKSKICHLSSHSDEDLFMLN 120

Query: 184 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
           ECPYDQGGYF+INGSEKVLIAQE+ + N V VFKK QP+ + Y AE+RS  E  +R  S+
Sbjct: 121 ECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFTYTAEIRSALEKGSRLISS 180

Query: 244 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQ 303
           + +++  +  +  G  GQ I+ATLP+++ ++P+ IVFRALG V+D+DIL HICYD  D+Q
Sbjct: 181 LTMKLYGKGDSARGGFGQTIQATLPFVKADLPVAIVFRALGVVSDEDILNHICYDRNDSQ 240

Query: 304 MMELLRPSLEEAFVIQNQQVALDYIGKRG----ATVGVTRDKRIKYAKEILQKEMLPHVG 359
           M+E+LRP +EEAF +Q+++VALD+IGKRG    A++G  R+KR++ AK+ILQKE LPH+ 
Sbjct: 241 MLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQASLG--REKRVRVAKDILQKETLPHIS 298

Query: 360 TGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT 419
             +  ET+KA++ GY++H+LL CALGRR  DDRDH+G KRLDLAGPLL  LFR + R++ 
Sbjct: 299 QSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGIIRRIN 358

Query: 420 RDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNR 478
            ++  Y+++CV++ ++ NL  AIK  T+++GLKYSLATGNWG Q  AA + AGVSQVLNR
Sbjct: 359 TELSNYLKRCVESNRNFNLTVAIKPSTLSNGLKYSLATGNWGDQKKAASSTAGVSQVLNR 418

Query: 479 LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
            T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM Y+
Sbjct: 419 YTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYV 478

Query: 539 TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRR 598
           +VGS A P++EF+   G E  EE  P   P ATKIFVNG WVG+H DP+ LV  +   RR
Sbjct: 479 SVGSPAEPLIEFMINRGMEVVEEYEPTRYPHATKIFVNGSWVGVHADPKHLVNQVLDTRR 538

Query: 599 RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----------RLLIKKRDIIAL 648
           +  V  EV +VRDIR +E +I++D GR  RP+F V ++          +L++ K  +  L
Sbjct: 539 KSYVQFEVSLVRDIRDREFKIFSDAGRVMRPVFTVHQEDDYENNITKGQLVLTKEHVNRL 598

Query: 649 QQRES-----PEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP-EEAYAD 701
            Q ++     PED  GW  L+ +G +EY+D EEEET MI MT  DL   R    +EA A+
Sbjct: 599 AQEQAEPPANPEDKFGWDGLIREGAVEYLDAEEEETAMICMTPEDLELYREQKNDEAEAE 658

Query: 702 T---------------------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 740
                                 YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 659 KREQEEDRNKRLKTKVNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGK 718

Query: 741 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 800
           QAMG ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQ
Sbjct: 719 QAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQ 778

Query: 801 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 860
           EDSVIMNQSSIDRG FRSLFFRSY D+EKK+G    E F +P +  T+ M+HG+YDKLD+
Sbjct: 779 EDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDE 838

Query: 861 DGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR---YTRRDHSISLRHSETGMVDQVLL 917
           DG+  PG RVSGED+IIGKT PI Q E Q   +R   + RRD S  LR +E G+VDQV+L
Sbjct: 839 DGIVAPGVRVSGEDIIIGKTAPIDQ-ENQDLGTRTQSHQRRDISTPLRSTENGIVDQVIL 897

Query: 918 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
           T NAD +++VKVRVR+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP++ EG+TPDII+NP
Sbjct: 898 TVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINP 957

Query: 978 HAIPSRMTIGQLIECI 993
           HAIPSRMTI  LIEC+
Sbjct: 958 HAIPSRMTIAHLIECL 973


>gi|45545357|gb|AAS67526.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Xanthoria polycarpa]
          Length = 893

 Score = 1097 bits (2838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/898 (58%), Positives = 674/898 (75%), Gaps = 49/898 (5%)

Query: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266
            + + N V VFKK   N   Y+AE+RS  E  +R  S++ V++ +    K G  G  I   
Sbjct: 1    RSAANIVQVFKKSGTNT-PYIAEIRSALEKGSRLISSLSVQLTTLAKTKEGG-GHTIMVD 58

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            +PYI  ++P +I+FRALG V+D+DIL HICYD  D  M+E+L+P LEEA++IQ+++VALD
Sbjct: 59   MPYIVPKVPAMILFRALGVVSDEDILNHICYDRADGDMLEMLKPPLEEAWLIQDREVALD 118

Query: 327  YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
            ++GKRG    ++R++RIK+A+++LQKE+LPH+   +  ET+KA++ GY+IHR+L CALGR
Sbjct: 119  FLGKRGKNQKMSRNERIKFARDVLQKELLPHISQTEGSETRKAFFLGYMIHRMLQCALGR 178

Query: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
            R  DDRDH+G KRLDLAGPLL GLFRMLF+KLT+D+  Y+QKCV++ ++ NL   +K  T
Sbjct: 179  RDVDDRDHFGKKRLDLAGPLLAGLFRMLFQKLTKDIYKYLQKCVESNREFNLALGVKQNT 238

Query: 447  ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
            ++SGLKYSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPR
Sbjct: 239  LSSGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPR 298

Query: 506  QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
            QLHN+ WG++CPAETPEGQACGLVKNLALM YITVG+ A PI+++L   G E+ EE  P 
Sbjct: 299  QLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPADPIVDYLTNRGMESLEEYEPT 358

Query: 566  VIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGR 625
              P ATK+FVNG W+G H DP  LV  ++ +RR+  +  E  +VRDIR +E +I+TD GR
Sbjct: 359  RAPHATKVFVNGTWIGCHNDPAHLVTHIQEIRRKGIIAHEASLVRDIRDREFKIFTDAGR 418

Query: 626  CSRPLFIVEK-----------------QRLLIKKRDIIALQQRESPEDG-GWHDLVAKGF 667
              RPLF+++                  Q+L  ++  ++ +   E  E   GW  LV  G 
Sbjct: 419  VCRPLFVIDNDPKSENNGNLALTKDMVQKLEDERDMVLTMDPEERAEQVIGWEALVDSGA 478

Query: 668  IEYIDTEEEETTMISMTINDL-----------------------VQARLHPEEAYADTYT 704
            +EY+D EEEET MI+MT  DL                       V+A L+P    A T+T
Sbjct: 479  VEYVDAEEEETIMIAMTPEDLEISRHIQAGYAAPVPSEDAPNQRVKAPLNPT---AHTWT 535

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYP
Sbjct: 536  HCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYP 595

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y
Sbjct: 596  QKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAY 655

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
             D EK++G  V E+F +P R+ T+ ++HG+YDKLDDDGL  PG RVSGEDVIIGKTTPI+
Sbjct: 656  VDTEKRVGMTVLENFEKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTPIA 715

Query: 885  QD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 942
             D +  GQ ++ + ++D S  LR +E G+VD+VLL+TN++GL+FVKVR+R+ +IPQIGDK
Sbjct: 716  PDAQEMGQRTKSHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDK 775

Query: 943  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
            F+SRHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G
Sbjct: 776  FASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRG 835

Query: 1003 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             EGDATPFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 836  YEGDATPFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 893


>gi|3002939|gb|AAC08960.1| RNA polymerase II second largest subunit [Peperomia caperata]
          Length = 554

 Score = 1095 bits (2831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/556 (92%), Positives = 539/556 (96%), Gaps = 2/556 (0%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQAT
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQAT 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNGCWVGIHR+P++LVKTLR+LRR++DVNTEVGV+RDIRLKELR+YTDYGRCSRPLF
Sbjct: 61   KIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVE Q+LLIKKRDI ALQQRE+ E+G WH LV+KGFIEY+DTEEEETTMISMTINDLVQA
Sbjct: 121  IVENQKLLIKKRDIQALQQRETQEEG-WHFLVSKGFIEYVDTEEEETTMISMTINDLVQA 179

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            R   ++AY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180  R-RSKDAYSTTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 238

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 239  LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 298

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 299  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVS 358

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKT+PI+QDE+QGQASRY RRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+
Sbjct: 359  GEDVIIGKTSPIAQDESQGQASRYNRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRM 418

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVN HAIPSRMTIGQLIE
Sbjct: 419  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNQHAIPSRMTIGQLIE 478

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLG
Sbjct: 479  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLG 538

Query: 1052 PTYYQRLKHMVDDKIH 1067
            PTYYQRLKHMVDDKIH
Sbjct: 539  PTYYQRLKHMVDDKIH 554


>gi|2736117|gb|AAB94059.1| RPB140 [Hordeum vulgare]
          Length = 555

 Score = 1092 bits (2825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/556 (92%), Positives = 539/556 (96%), Gaps = 1/556 (0%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEWGTENFEEISPAVIPQA 
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAA 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNGCWVGIHR+P++LVKTLRRLRR++DVNTEVGVVRDIRLKELR+YTDYGRCSRPLF
Sbjct: 61   KIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVE QRLLIKK+ I ALQQRE+P D GWHDLVAKGFIEYIDTEEEETTMISMTI DL  +
Sbjct: 121  IVENQRLLIKKKHIRALQQRETP-DEGWHDLVAKGFIEYIDTEEEETTMISMTIRDLETS 179

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            R +P EAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180  RHNPGEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDTLAYVLYYPQKPLVTTRAMEHL FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240  LRMDTLAYVLYYPQKPLVTTRAMEHLLFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRSLFFRSYRDEEKKMGTLVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300  DRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKT+PI QD+AQGQA+RY++RDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+
Sbjct: 360  GEDVIIGKTSPIPQDDAQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRM 419

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            CIMGKVAAHMGKEGDATPFTDVTVD+ISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLG
Sbjct: 480  CIMGKVAAHMGKEGDATPFTDVTVDHISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLG 539

Query: 1052 PTYYQRLKHMVDDKIH 1067
            PTYYQRLKHMVDDKIH
Sbjct: 540  PTYYQRLKHMVDDKIH 555


>gi|46277273|gb|AAS86827.1| RNA polymerase II second largest subunit, partial [Antirrhinum majus]
          Length = 573

 Score = 1092 bits (2824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/575 (88%), Positives = 550/575 (95%), Gaps = 2/575 (0%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAA PILEFL+EW TENFEEISPAVIPQATKIFVNG 
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAANPILEFLDEWSTENFEEISPAVIPQATKIFVNGN 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            W+GIHR+PE+LV+TLR+LRR+VDVNTEVG++RDI LKELR+YTDYGRCSRPLFIV+KQRL
Sbjct: 61   WIGIHRNPELLVRTLRQLRRQVDVNTEVGIIRDIHLKELRLYTDYGRCSRPLFIVDKQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            +IKK+DI+ALQQRES ++ GWHDLV  G +EY+DTEEEETTMISMTINDL+ +R +P+ A
Sbjct: 121  VIKKKDILALQQRESADEYGWHDLVRNGSVEYVDTEEEETTMISMTINDLINSRHNPDAA 180

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y++TYTHCEIHPSL+LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 181  YSETYTHCEIHPSLVLGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 240

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYRDEEKKMGTLVKEDFG P+R NTMGMRHGSYDKL+DDG APPGTRVSG+DVIIG
Sbjct: 301  LFFRSYRDEEKKMGTLVKEDFGCPNRDNTMGMRHGSYDKLEDDGFAPPGTRVSGDDVIIG 360

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KTTP + DE   Q  R+TR+DHS SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQ
Sbjct: 361  KTTPFTPDE--NQNIRFTRQDHSSSLRHSESGVVDQVLLTTNADGLRFVKVRIRSVRIPQ 418

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGT+GMTYTQ+DMPW++EGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 419  IGDKFSSRHGQKGTIGMTYTQDDMPWSIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 478

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR LT+MIFLGPTYYQRL
Sbjct: 479  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRPLTSMIFLGPTYYQRL 538

Query: 1059 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF
Sbjct: 539  KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 573


>gi|2736119|gb|AAB94060.1| RPB140 [Spinacia oleracea]
          Length = 556

 Score = 1092 bits (2824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/556 (94%), Positives = 545/556 (98%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW TENFEEISPAVIPQ+T
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISPAVIPQST 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNGCWVGIHRDPE+LVKTLR+LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF
Sbjct: 61   KIFVNGCWVGIHRDPELLVKTLRQLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVEKQ LLIKK+DI ALQQRE+PEDGGWHDLVAKG+IEYIDTE EETTMISMTINDLV A
Sbjct: 121  IVEKQSLLIKKKDIRALQQRENPEDGGWHDLVAKGYIEYIDTEGEETTMISMTINDLVTA 180

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            R++PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 181  RINPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 240

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
            FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS+I
Sbjct: 241  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAI 300

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRSLFFRSYRDEEKKMGTL KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR +
Sbjct: 301  DRGFFRSLFFRSYRDEEKKMGTLDKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCA 360

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKTTP++ DEA G ++RY+RRDHSISLRHSETGMVDQVL TTNADGLRFVKVRV
Sbjct: 361  GEDVIIGKTTPLAPDEATGPSARYSRRDHSISLRHSETGMVDQVLPTTNADGLRFVKVRV 420

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RSVR+PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 421  RSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 480

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            CIMGKVAAH+GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLG
Sbjct: 481  CIMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLG 540

Query: 1052 PTYYQRLKHMVDDKIH 1067
            PTYYQRLKHMVDDKIH
Sbjct: 541  PTYYQRLKHMVDDKIH 556


>gi|46277279|gb|AAS86830.1| RPB140, partial [Liquidambar acalycina]
          Length = 540

 Score = 1090 bits (2819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/540 (96%), Positives = 537/540 (99%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE+QRL
Sbjct: 61   WVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVERQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK+DI ALQQRE+P+DGGWHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEA
Sbjct: 121  LIKKKDIQALQQRETPDDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEA 180

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181  YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRS
Sbjct: 241  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRS 300

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYRDEEKKMGTLVKEDFGRP+R++TMGMRHGSY+KLDDDGLAPPGTRVSGEDVIIG
Sbjct: 301  LFFRSYRDEEKKMGTLVKEDFGRPNRADTMGMRHGSYEKLDDDGLAPPGTRVSGEDVIIG 360

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KTTPI+QDE+QGQASRYTRRDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 361  KTTPIAQDESQGQASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 420

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 481  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 540


>gi|2736121|gb|AAB94061.1| RPB140 [Magnolia virginiana]
          Length = 555

 Score = 1089 bits (2817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/556 (92%), Positives = 537/556 (96%), Gaps = 1/556 (0%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEIS AVIPQAT
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISAAVIPQAT 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNGCWVGIHR+P++LVKTLR LRRR+DVNTEVGV+RDIRLKELR+YTDYGRCSRPLF
Sbjct: 61   KIFVNGCWVGIHRNPDLLVKTLRLLRRRIDVNTEVGVIRDIRLKELRLYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IV++QRLLIKK+ I ALQQRE+ E+G WHDLVAKGFIEY+D EEEETTMISMTI+DL+ A
Sbjct: 121  IVDQQRLLIKKKHIHALQQRETQEEG-WHDLVAKGFIEYVDPEEEETTMISMTISDLISA 179

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            R +PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180  RHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240  LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRESTMGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKT PI+QD+ QGQ +RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+
Sbjct: 360  GEDVIIGKTIPIAQDDVQGQVTRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRM 419

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTPEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL AMIFLG
Sbjct: 480  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLG 539

Query: 1052 PTYYQRLKHMVDDKIH 1067
            PTYYQRLKHMVDDKIH
Sbjct: 540  PTYYQRLKHMVDDKIH 555


>gi|40641904|emb|CAD88602.1| RNA polymerase II second largest subunit [Alangium platanifolium]
          Length = 540

 Score = 1089 bits (2817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/540 (96%), Positives = 536/540 (99%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 61   WVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK+DI  LQQRE+PE+GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV AR++PEEA
Sbjct: 121  LIKKKDIQMLQQRETPEEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARINPEEA 180

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181  YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 301  LFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 360

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KTTPI+QD++QGQASRY+RRDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 361  KTTPIAQDDSQGQASRYSRRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQ 420

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT+MIFLGPTYYQRL
Sbjct: 481  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRL 540


>gi|45545339|gb|AAS67517.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Alyxoria varia]
          Length = 894

 Score = 1088 bits (2813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/896 (58%), Positives = 662/896 (73%), Gaps = 44/896 (4%)

Query: 207  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 266
            + + N V VFKK+Q     + AE+RS  E   R  S+  ++    +     + G ++ A 
Sbjct: 1    RSAANIVQVFKKKQ-GPIPWTAEIRSAVEKGTRLISSFSIKWAENSMIIKRTPGPFVYAM 59

Query: 267  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALD 326
            LPYI+ ++P+ +VFRALG V+D+DIL HICYD  DT M+ELL+PS+EE  +IQ+++ ALD
Sbjct: 60   LPYIKADVPMAVVFRALGVVSDEDILNHICYDRNDTGMLELLKPSIEEGAMIQDRENALD 119

Query: 327  YIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
            +I +RG T G T+D+R+K+A++I+Q+E LPH+   +  +T+KA++FGY+IHRLL C LGR
Sbjct: 120  WIARRGNTTG-TKDRRLKFARDIMQREFLPHISQKEGSDTRKAFFFGYMIHRLLQCVLGR 178

Query: 387  RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT 446
            R EDDRDH+G KRLDLAGPL+  LFR+LF KLT+DV  Y+QKCV+N  + N+Q A+KA  
Sbjct: 179  REEDDRDHFGKKRLDLAGPLIANLFRVLFLKLTKDVFKYLQKCVENSTEFNVQMAVKASV 238

Query: 447  ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 505
            IT+GLKYSLATGNWG Q  AA  +AGVSQVLNR TYASTLSHLRR N+P+GR+GKLAKPR
Sbjct: 239  ITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPR 298

Query: 506  QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPA 565
            QLHN+ WG++CPAETPEGQACGLVKNL+LM Y++VGS + PI +F+ +   E  EE  P 
Sbjct: 299  QLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSESTPITDFMGQRNMELLEEYDPV 358

Query: 566  VIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGR 625
            V P ATK+FVNG WVG+H +P  LV  ++ LRR   ++ E+ ++RDIR +E +I+TD GR
Sbjct: 359  VNPTATKVFVNGVWVGVHSNPGQLVSVVQELRRNGTLSYEMTLIRDIRDREFKIFTDAGR 418

Query: 626  CSRPLFIVEK------------------QRLLIKKRDIIALQQRESPE-DGGWHDLVAKG 666
              RPLF+VE+                  Q L  K  D       E+ E   GW  L+  G
Sbjct: 419  VMRPLFVVEQDVRKPNKGSLVLTKQHVQQILADKDIDTKGYSDEEAAEMKFGWKGLIHAG 478

Query: 667  FIEYIDTEEEETTMISMTINDL------VQARLHPEEAYAD--------------TYTHC 706
             +EY+D EEEET MI MT  DL      +Q    PE   +D              TYTHC
Sbjct: 479  VVEYLDAEEEETAMIIMTPEDLEEHRDLMQGIPAPEGVPSDRHKRIKPKPNPSVKTYTHC 538

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            EIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +TNY  RM+T+  VLYYPQK
Sbjct: 539  EIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQK 598

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
            PL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y +
Sbjct: 599  PLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE 658

Query: 827  EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 886
            +EK++G  V E F +P R++T+ ++ G+YDKLDDDG+  PG RVSG+D+IIGKT PI+ D
Sbjct: 659  QEKRIGVNVLEQFEKPMRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAAD 718

Query: 887  --EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
              E   + + +T+RD S  LR +E G+VDQVL TTN +GLRFVKVR R+ ++PQIGDKF+
Sbjct: 719  AKELGQKTTMHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFA 778

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT+G+TY QEDMP+T EG+ PDII+NPHAIPSRMTI  L+EC++ KV +  GKE
Sbjct: 779  SRHGQKGTIGITYRQEDMPFTREGLVPDIIINPHAIPSRMTIAHLVECLLSKVGSLEGKE 838

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            GDATPFTDVTV+++SK L   GYQ RGFE MYNGHTG++L A IFLGPTYYQRL+H
Sbjct: 839  GDATPFTDVTVESVSKLLANNGYQQRGFEVMYNGHTGKKLRAQIFLGPTYYQRLRH 894


>gi|56694374|gb|AAW22927.1| RNA polymerase II second largest subunit [Dianthus sp. UWG]
          Length = 540

 Score = 1087 bits (2812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/540 (95%), Positives = 531/540 (98%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW TENFEEISPAVIPQATKIFVNG 
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISPAVIPQATKIFVNGG 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHRDP++LVKTLR LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 61   WVGIHRDPDLLVKTLRELRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK+DI ALQQRE+PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV ARL+PEE+
Sbjct: 121  LIKKKDIRALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEES 180

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181  YSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 301  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 360

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KTTP+S +EAQG A+RY+R+DHSISLRHSE+G+VDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 361  KTTPLSPEEAQGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQ 420

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AH+GKEGDATPFTDVTVDNISKAL KCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 481  AHVGKEGDATPFTDVTVDNISKALQKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 540


>gi|120561279|gb|ABM27024.1| RNA polymerase II second largest subunit, partial [Monosiga
            brevicollis]
          Length = 904

 Score = 1087 bits (2811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/911 (58%), Positives = 671/911 (73%), Gaps = 22/911 (2%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--K 255
            SEKVLIAQEKM+ N VYVF+K+  +K+ +V E+RS+ E  NRP STM V+ML   S   K
Sbjct: 1    SEKVLIAQEKMAGNTVYVFEKKD-SKHMFVTEMRSIVEDSNRPTSTMMVKMLRGGSGGTK 59

Query: 256  GGSS-GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEE 314
            G ++ G+ I A+LPYIR +IP++++FRALGF  D+ ILEHI YDF D +MMELL+PSL+E
Sbjct: 60   GRATFGRVIHASLPYIRQDIPVVVLFRALGFEDDRSILEHIIYDFDDMEMMELLKPSLDE 119

Query: 315  AFVIQNQQVALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 373
            AFV+Q ++VALD IG+R  A VG+++D R+++A++ILQKEMLPH+G G  CE  KA++ G
Sbjct: 120  AFVVQTREVALDLIGRRSMAAVGMSKDMRVRFARDILQKEMLPHIGVGPQCEQAKAFFLG 179

Query: 374  YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG 433
            Y++HR L  AL RR  DDRDHYGNKRLDLAG L+  LFR LF++LT+ +   V   V+  
Sbjct: 180  YMVHRTLQAALRRRELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKLTRKVTDLVNRN 239

Query: 434  KDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
                +   +  + + SGL+YSLATGNWG Q  A   RAGVSQVLNRLT+ASTLSHLRRLN
Sbjct: 240  HKFMVITLLDVEILGSGLRYSLATGNWGDQKKAHEARAGVSQVLNRLTFASTLSHLRRLN 299

Query: 493  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
            SPI R GK+AKPRQLHN+ WG +CPAETPEG A GLVKNL+LM  +TVGS   P+ + L 
Sbjct: 300  SPIDRTGKIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLSLMASLTVGSDDTPVHDLLG 359

Query: 553  EWGTENFEEI-SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRD 611
              G +  + + S + I  ATK+FVNG WVGIH  P+ LV T+R++RR   V +EV + R+
Sbjct: 360  ASGLDYLDRLPSRSAIKTATKVFVNGNWVGIHSHPDELVTTMRQMRRAHSVASEVSIFRN 419

Query: 612  IRLKELRIYTDYGRCSRPLFIVEKQ-----RLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
            IR +E+ I TD GR +RPL IV K      R  +K   ++AL+     +   W  LV +G
Sbjct: 420  IREREVHIVTDSGRTTRPLLIVNKDDANRCRFALKNSHVMALRN----DQMSWTHLVQRG 475

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEE---AYADTYTHCEIHPSLILGVCASIIPF 723
             +EYID  EEETTMI+M  +D +     P+    +Y +TYTHCEIHPS+IL +CASIIPF
Sbjct: 476  VVEYIDVNEEETTMIAMYGHDPLALLALPDSNTTSYCNTYTHCEIHPSMILSICASIIPF 535

Query: 724  PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 783
            PDHNQSPRNTYQSAMGKQAMG+Y+TN+  RMDTLA+VLYYPQ+PLV TR+M +L F +LP
Sbjct: 536  PDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQRPLVQTRSMNYLRFAELP 595

Query: 784  AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR-DEEKKMGTLVKEDFGRP 842
            AGINAIV I  Y+GYNQEDSVIMN+ S++RG FRS+F+RSY   E  + G ++K D  +P
Sbjct: 596  AGINAIVGIMTYTGYNQEDSVIMNRYSVERGLFRSVFYRSYAASEHSERGEIIKID--KP 653

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSI 902
             R N +GMR  +YDKL+DDG+  PG RVSG+D I+G+   + +   Q    R+ +RD S+
Sbjct: 654  SRENCIGMRRANYDKLEDDGIVAPGIRVSGDDAIVGRLLELPEATRQASGGRFEKRDKSL 713

Query: 903  SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
             LR SE+G++D V+++ N  G +FVK+RVRSVR PQIGDKF+SRHGQKGT GM Y QEDM
Sbjct: 714  FLRSSESGIIDGVMISVNQKGEKFVKIRVRSVRTPQIGDKFASRHGQKGTCGMQYAQEDM 773

Query: 963  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1022
            P+   G+ PDIIVNPHAIPSRMTIG LIEC++GK A+H G  GDATPFT V V +++  L
Sbjct: 774  PFAASGVVPDIIVNPHAIPSRMTIGHLIECLLGKSASHSGTIGDATPFTKVNVTDVADIL 833

Query: 1023 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1082
                +Q  G E MYNG TGR++ A +FLGPTYYQRLKHMVDDKIH+R RGP+Q LTRQP 
Sbjct: 834  EGYNFQRYGNEVMYNGFTGRKMQAQVFLGPTYYQRLKHMVDDKIHARARGPLQNLTRQPM 893

Query: 1083 EGRSRDGGLRF 1093
            EGRSRDGGLRF
Sbjct: 894  EGRSRDGGLRF 904


>gi|46277277|gb|AAS86829.1| RNA polymerase II second largest subunit, partial [Astilbe chinensis]
          Length = 540

 Score = 1085 bits (2807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/540 (96%), Positives = 535/540 (99%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP+ATKIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPEATKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 61   WVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK+DI ALQQRE+PEDGGWHDLVAKGFIEY+DTEEEETTMISMTINDLV ARL+PEEA
Sbjct: 121  LIKKKDIQALQQRETPEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEA 180

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y++ YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181  YSEYYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYRDEEKKMGTLVKEDFGRP+R++TM MRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 301  LFFRSYRDEEKKMGTLVKEDFGRPNRNDTMNMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 360

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KT+PI+QDE+QGQASRYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 361  KTSPIAQDESQGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 420

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 481  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 540


>gi|123481595|ref|XP_001323594.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
 gi|121906462|gb|EAY11371.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
          Length = 1177

 Score = 1085 bits (2806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/1191 (47%), Positives = 760/1191 (63%), Gaps = 53/1191 (4%)

Query: 20   EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
            E+  +Q D W VIS +FE +GLV+QQL S++ FI N +  ++D+   I ++ +       
Sbjct: 13   EDNWSQNDMWMVISKFFENRGLVKQQLKSYNSFINNCVDSVLDDKGHITLQSDQLLANKI 72

Query: 80   QSDF---------AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 130
            + DF          +TI+ ISFG   + +P   E       L P  +RLR+L+YS  L  
Sbjct: 73   KMDFNSNDDDEDQGKTIH-ISFGTSTVLRPTTPEG----KQLTPMISRLRSLSYSLILRS 127

Query: 131  DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL--YQNSEKDLTELGECPYD 188
            D+   V+    D  +  +  D   V I KVP+M+RS YC L  +++       L EC YD
Sbjct: 128  DIRVVVM----DSNKNMKQLDVDGVEIAKVPVMIRSEYCHLSNHRDDRAINDNLNECDYD 183

Query: 189  QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
             GGYFI+NGSEKV+I QE M  N    + ++   KY    E+RS  +   R      + +
Sbjct: 184  PGGYFIVNGSEKVIIGQEHMVINKPICYAQKSMVKYDLATEIRSQPKVFGRLSQPFNLFL 243

Query: 249  LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
            L+ T+ +     + I A L      IP+ I+FRAL F  DK+IL+ ICYD +D++ +++L
Sbjct: 244  LAPTAKQ---PERPIHAKLSKTEKTIPLFILFRALKFKGDKEILDLICYDPEDSEFIDVL 300

Query: 309  RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
            RPS+EE+    + +  LD++GKR +     + +R++ A+ +L + +LPH+G  +   T K
Sbjct: 301  RPSIEESSSFLDDRACLDFVGKRCSIAAEEKSQRLRKAQRLLNEYLLPHLGEKESDTTSK 360

Query: 369  AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
            A++ GY+ H L+   LGRR +DDRDHY NKRLDLAGPL+G LF +LF K+ + +  +++K
Sbjct: 361  AFFIGYMAHNLINVVLGRRDQDDRDHYSNKRLDLAGPLIGQLFALLFEKMIKSLTQHLEK 420

Query: 429  CVDNGK---------DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL 479
             + +G          D+  Q  +  K+ITSGL+YS+ TGNW     AG++AGVSQ+LNRL
Sbjct: 421  RLKDGNIDQMAKSAADLTRQGVLNFKSITSGLEYSIGTGNWSVQRQAGSKAGVSQMLNRL 480

Query: 480  TYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 539
            T+ STLS+LRR N+PIGR+GKL  PR LHN+ WG +CP ETPEGQ+CGL+KNLALM  +T
Sbjct: 481  TFLSTLSNLRRTNTPIGRDGKLTGPRHLHNTHWGYICPVETPEGQSCGLIKNLALMSIVT 540

Query: 540  VG---SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRL 596
            V     A   I   LE+ GT   ++I+P  I  +TKIF+NG W GIH D   L++TL   
Sbjct: 541  VNRELEAGDAITRILEDTGTIPIQQITPDQIKDSTKIFLNGAWYGIHTDAYDLMETLLSE 600

Query: 597  RRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 656
            RR + + ++V  V  IR +E+ I+TD GR +RP+ IV    L +KK  +         E+
Sbjct: 601  RRSLKIPSDVSFVHHIRDQEIFIWTDGGRITRPVLIVNDMHLTLKKSVLYD-------EN 653

Query: 657  GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
              W  L  KG +EY+D +EEET +I+++  DL + R  P      TYTHCEIHPSLI GV
Sbjct: 654  TNWKVLRYKGMVEYLDIDEEETKLIALSPADLEENRNSP--TGVKTYTHCEIHPSLIFGV 711

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            C +IIPFPDHNQSPRNTYQ AMGKQA+G+Y TNY  RMD+ ++VL+YPQKPLV TR M +
Sbjct: 712  CGTIIPFPDHNQSPRNTYQCAMGKQAIGLYTTNYMIRMDSSSHVLWYPQKPLVATRNMRY 771

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL-V 835
            L+F +LPAGIN  VAI CY+GYNQEDS+++N S+IDRG FRS FFR+Y++  +  GT   
Sbjct: 772  LNFNKLPAGINVTVAICCYTGYNQEDSLMLNASAIDRGLFRSYFFRTYKETAEGDGTEGA 831

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRY 895
             E F  PD     G++     K+D DGLA PG  VS +DVIIGK +P S  E   +    
Sbjct: 832  SEVFTFPDPQTVKGIKLHDSSKIDADGLAIPGAVVSAQDVIIGKISPDSPTELDHRQY-- 889

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
              +D S  +R  ETG+VD VL T     L+  +VR R +R P+IGDKF SRHGQKG  GM
Sbjct: 890  --KDTSCVVRPMETGVVDLVLRTITKKNLQLARVRTRQMRRPEIGDKFCSRHGQKGVCGM 947

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA---HMGKEGDATPFTD 1012
            TY QEDMP+T +G+ PDII+NPHA+PSRMTIG LIEC++GK  A       EGDATPF  
Sbjct: 948  TYRQEDMPFTRDGMVPDIIMNPHALPSRMTIGHLIECLLGKCTAIDPQNADEGDATPFCG 1007

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 1072
            VTVD I+K L   G++  G ET+YNG +G+RL A I+ GPTYYQRLKHMV DK H+R  G
Sbjct: 1008 VTVDAIAKRLQDAGFEKYGNETLYNGRSGKRLKAKIYFGPTYYQRLKHMVGDKAHARALG 1067

Query: 1073 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 1132
               ++ RQP +GR+R+GGLRFGEMERDC+IAHG S  +++RL + SD Y V VC+ CGLI
Sbjct: 1068 RKSLILRQPVDGRARNGGLRFGEMERDCLIAHGVSAMMRDRLLENSDRYFVPVCKTCGLI 1127

Query: 1133 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKED 1183
            AI      + EC  C+++  + +V +PYA KL+ QELM+M IAPR+   ED
Sbjct: 1128 AIEK-TDGTMECPACQDEGRLAKVEMPYAFKLVIQELMSMCIAPRLNLIED 1177


>gi|40644039|emb|CAD92460.1| RNA polymerase II [Escallonia sp. Oxelman 2340]
          Length = 543

 Score = 1082 bits (2799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/543 (95%), Positives = 535/543 (98%)

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP ATKIFVNGCWVGIHR
Sbjct: 1    ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPPATKIFVNGCWVGIHR 60

Query: 585  DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 644
            DP+MLV+TLR+LRRR DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV KQRLLIKK D
Sbjct: 61   DPDMLVRTLRKLRRRXDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVNKQRLLIKKAD 120

Query: 645  IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 704
            I ALQQRE+PEDGGWHDLVAKG+IEYIDTEEEETTMISMTINDLV ARL+PEEAY++TYT
Sbjct: 121  IQALQQRETPEDGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYT 180

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLAYVLYYP
Sbjct: 181  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYP 240

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSY
Sbjct: 241  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSY 300

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
            RDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+
Sbjct: 301  RDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIA 360

Query: 885  QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
            QD+AQGQASRY++RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS
Sbjct: 361  QDDAQGQASRYSKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 420

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
Sbjct: 421  SRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 480

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD
Sbjct: 481  GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 540

Query: 1065 KIH 1067
            KIH
Sbjct: 541  KIH 543


>gi|45120570|gb|AAO64659.2| RNA polymerase II subunit RPB2, partial [Gautieria otthii]
          Length = 856

 Score = 1079 bits (2790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/859 (61%), Positives = 646/859 (75%), Gaps = 30/859 (3%)

Query: 220  QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 279
            QP+   ++AE+RS  E   +  ST  V+M  R+  K  SSG  I+AT+PYI+T+IPI +V
Sbjct: 1    QPSPINFLAEIRSAVEKGGKTVSTFQVKMFHRSQEK--SSGNVIKATIPYIKTDIPIWVV 58

Query: 280  FRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR 339
            FRALG ++D+DILEHICYD QD QM+E+L+P +++ FVIQ++ VALD+IG RG T+G++R
Sbjct: 59   FRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDRDVALDFIGNRGTTIGLSR 118

Query: 340  DKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKR 399
            D+R++YA+EILQKEMLPH+   +  E+KKAY+FGY++HRLLL AL RR  DDRDH+G KR
Sbjct: 119  DRRLRYAQEILQKEMLPHIAMSEGAESKKAYFFGYMVHRLLLAALERRELDDRDHFGKKR 178

Query: 400  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 459
            LDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGN
Sbjct: 179  LDLAGPLLASLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKPNTITNGLKYSLATGN 238

Query: 460  WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
            WG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P                        
Sbjct: 239  WGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPXXXXXXXXXXXXXXXXXXXXXXXX 298

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
               EGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG 
Sbjct: 299  XXXEGQACGLVKNLALMACISVGSPSPPVIEFLEEWGLESLEENAHSATP-CTKVFVNGV 357

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L
Sbjct: 358  WLGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQL 417

Query: 639  LIKKRDIIALQQ---RESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 693
             ++K+ I  LQQ    + P  G   W D+V  G IE +D EEEET MISMT  DL  +RL
Sbjct: 418  ALQKKHIKWLQQGYRDDDPAHGQYKWDDMVKGGIIELLDAEEEETVMISMTPEDLENSRL 477

Query: 694  HPEEA-------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
              +                     +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 478  QQQGVQTNTNDGEFDPAARLKSVMHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 537

Query: 735  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
            QSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 538  QSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILC 597

Query: 795  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
            YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EK  G    E+F +P R  T+ M+HG+
Sbjct: 598  YSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDMEKTSGIHQLEEFTKPTRDTTLRMKHGT 657

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQ-ASRYTRRDHSISLRHSETGMV 912
            YDKL+DDGL  PGT V GED+IIGKT PI ++ E  GQ  S +TRRD S  L+ +E+G+V
Sbjct: 658  YDKLEDDGLIAPGTGVRGEDIIIGKTAPIPAESEELGQKTSSHTRRDVSTPLKSTESGIV 717

Query: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            DQVL+TT +DG RFVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD
Sbjct: 718  DQVLITTGSDGQRFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPD 777

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032
            II+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S  L K GY  RG 
Sbjct: 778  IIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVESVSTLLRKQGYHSRGL 837

Query: 1033 ETMYNGHTGRRLTAMIFLG 1051
            E MY+GHTGR+L A I+LG
Sbjct: 838  EVMYHGHTGRKLQAQIYLG 856


>gi|40643996|emb|CAD91515.1| RNA polymerase II second largest subunit [Hedera helix]
          Length = 541

 Score = 1078 bits (2787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/541 (95%), Positives = 533/541 (98%), Gaps = 1/541 (0%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVY+TVGSAAYPILEFLEEWGTENFEEISPAVI QATKIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMVYVTVGSAAYPILEFLEEWGTENFEEISPAVITQATKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHRDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV+ QRL
Sbjct: 61   WVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVKNQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LI+K+DI ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL+ AR++PEEA
Sbjct: 121  LIRKKDIQALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLLSARVNPEEA 180

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLA
Sbjct: 181  YSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLA 240

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            +FFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 301  IFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 360

Query: 879  KTTPISQDEAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            KTTPI+QD+AQGQ ASRYTRRDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRS RIP
Sbjct: 361  KTTPIAQDDAQGQAASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSXRIP 420

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
             IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV
Sbjct: 421  XIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 480

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            AAHMGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR
Sbjct: 481  AAHMGKEGDATPFTDVTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 540

Query: 1058 L 1058
            L
Sbjct: 541  L 541


>gi|120561263|gb|ABM27016.1| RNA polymerase II second largest subunit, partial [Catenaria
            anguillulae]
          Length = 892

 Score = 1077 bits (2784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/904 (58%), Positives = 667/904 (73%), Gaps = 53/904 (5%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKV+IAQE+ +TN V+VF K  P   AY AE+RS +++  R  S+  VRM         
Sbjct: 1    SEKVIIAQERTATNTVFVFSK--PGG-AYQAEIRSQSDAGQRTLSSFIVRM--------- 48

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
               + I  +LPYI+ EIP+ IVFRALG  +DK ILE ICY F D QM+E+L+P +E+A V
Sbjct: 49   DKQRRITCSLPYIQEEIPLPIVFRALGVHSDKQILETICYHFDDDQMLEMLKPCIEQADV 108

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+Q++ALD+IG+RG    + RD+RI+YA+++L++E LPH+GT   CET+KA++ GY++H
Sbjct: 109  IQDQELALDHIGRRGRVTNMHRDQRIRYARDLLERETLPHIGTTPGCETRKAWFIGYMVH 168

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD-V 436
            R+LL ALGRR  DDRDH+G KRLDLAGPLL  LF+  F K  +D+     K ++  +   
Sbjct: 169  RMLLAALGRRPIDDRDHFGKKRLDLAGPLLASLFKTFFSKFVKDITREFTKSIERSQGPF 228

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            +L   +K   IT+GL+Y+LATGNWG Q     TRAGVSQVLNR T+ASTLSHLRRLN+PI
Sbjct: 229  HLASVVKPGIITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTPI 288

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GREGKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM YI+VG++A P++E L+E+G
Sbjct: 289  GREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGTSAEPVVEALQEYG 348

Query: 556  TENFEEISPA-VIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT------EVGV 608
             EN EEIS A  +  ATK+FVNG WVGIH DP  L KTLR +RR  D+        EV +
Sbjct: 349  IENLEEISDASAVADATKVFVNGAWVGIHSDPADLFKTLREMRRMGDLTPPHLDEPEVSI 408

Query: 609  VRDIRLKELRIYTDYGRCSRPLFIV--EKQRLLIKKRDIIALQQRESPEDG--------- 657
            VRDIR  E+RIYTD GR  RPLF+V  + QRL ++K  + A  +    +D          
Sbjct: 409  VRDIRDNEIRIYTDPGRIMRPLFVVNEDTQRLKLRKAHVAAALEALKVDDDVKETDEMRD 468

Query: 658  ---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ---------------ARLHPEEA- 698
                W +L+ +G +E +DTEEEE  MISMT  DL +               ARL   +  
Sbjct: 469  SLMSWRNLLRQGVLELMDTEEEEMAMISMTPADLAESRGDKVVDKSKFDKTARLKSRKPG 528

Query: 699  -YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
             Y   +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+Q RMDTL
Sbjct: 529  EYCKRWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFQLRMDTL 588

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQ+PLVTTR+M +L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FR
Sbjct: 589  ANILYYPQRPLVTTRSMTYLRFRELPAGQNAIVAITCYSGYNQEDSVIMNQSSIDRGLFR 648

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            S+++RSY D EKK G + +E F +P+R  TM +R G+YD LDDDG+  PGT+V G+D+I+
Sbjct: 649  SIYYRSYFDSEKKSGGVEEEVFEKPNRDTTMRLRRGTYDLLDDDGIISPGTQVKGDDIIL 708

Query: 878  GKTTPISQDEAQ-GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 936
            GKT P+  D ++ G  +  T++D S SL+ +E G VD V++TTNAD L+FVKVRVRS R+
Sbjct: 709  GKTAPLPDDVSEMGARTTQTKKDVSTSLKATEKGYVDHVIVTTNADNLKFVKVRVRSTRV 768

Query: 937  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 996
            PQ+GDKF+SRHGQKGTVG+TY QEDMP++  G+TPD+IVNPHAIPSRMTIG L+EC++ K
Sbjct: 769  PQMGDKFASRHGQKGTVGVTYRQEDMPFSALGVTPDLIVNPHAIPSRMTIGHLVECLLSK 828

Query: 997  VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            V A +G EGDATPFTD+TV  IS+ L + G+Q RGFE MYNGHTGR+L A +F GPTYYQ
Sbjct: 829  VGALVGTEGDATPFTDLTVQEISQQLAQHGFQQRGFEVMYNGHTGRKLDAQVFFGPTYYQ 888

Query: 1057 RLKH 1060
            RLKH
Sbjct: 889  RLKH 892


>gi|46277263|gb|AAS86822.1| RNA polymerase II second largest subunit, partial [Liriodendron
            tulipifera]
          Length = 539

 Score = 1075 bits (2781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/540 (93%), Positives = 529/540 (97%), Gaps = 1/540 (0%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRL
Sbjct: 61   WVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK+ I +LQQRE+ +D GWHDLVAKGFIEY+DTEEEETTMISMTI+DLV ARL+P+EA
Sbjct: 121  LIKKKHIRSLQQRET-QDEGWHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPDEA 179

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 180  YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 239

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 240  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 299

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYRDEEKKMGTL+KEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 300  LFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 359

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KTTPI+QDE+QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQ
Sbjct: 360  KTTPIAQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 419

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 420  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 479

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
             HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 480  VHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 539


>gi|2736125|gb|AAB94063.1| RPB140 [Ginkgo biloba]
          Length = 555

 Score = 1075 bits (2781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/555 (90%), Positives = 535/555 (96%), Gaps = 1/555 (0%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP AT
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPSAT 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNGCWVGIHRDP++LVKTLR+LRR+VDVNTEVGVVRDIRL+ELR+YTDYGRCSRPLF
Sbjct: 61   KIFVNGCWVGIHRDPDLLVKTLRQLRRQVDVNTEVGVVRDIRLRELRLYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVEKQRLLIKK DI ALQQRE PE+G WHDLVAKGFIEY+DTEEEETTMISMTI+DLV A
Sbjct: 121  IVEKQRLLIKKADIRALQQREGPEEG-WHDLVAKGFIEYVDTEEEETTMISMTISDLVTA 179

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            R +PEEAY+ TYTHCEIHPSLILGVCASIIPFPDH+QSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180  RNNPEEAYSHTYTHCEIHPSLILGVCASIIPFPDHDQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDTLA+VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQE SVIMNQSSI
Sbjct: 240  LRMDTLAFVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEGSVIMNQSSI 299

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRSLF+R+YRDEEK+MGTLVKE+FGRP+R NT GMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300  DRGFFRSLFYRAYRDEEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKT+PIS+ +  GQ +RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVK+R+
Sbjct: 360  GEDVIIGKTSPISRMKQGGQVARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKIRM 419

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            CIMGKVAAH+GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLG
Sbjct: 480  CIMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLG 539

Query: 1052 PTYYQRLKHMVDDKI 1066
            PTYYQRLKHMVDDKI
Sbjct: 540  PTYYQRLKHMVDDKI 554


>gi|46277285|gb|AAS86833.1| RNA polymerase II second largest subunit, partial [Rhododendron
            macrophyllum]
          Length = 549

 Score = 1075 bits (2779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/549 (95%), Positives = 538/549 (97%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHRDP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 61   WVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIK++DI ALQQRE+PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV ARL+PEEA
Sbjct: 121  LIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEA 180

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 181  YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 240

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 241  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 300

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDV+IG
Sbjct: 301  LFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVIG 360

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KTTPI+QDEAQG A+RYTRRDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 361  KTTPIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 420

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 421  IGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 480

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AHMGKEGDATPFTDVTVDNISKALHKCGYQ  G     BGHTGRRLT+MIFLGPTYYQRL
Sbjct: 481  AHMGKEGDATPFTDVTVDNISKALHKCGYQCVGSRPCTBGHTGRRLTSMIFLGPTYYQRL 540

Query: 1059 KHMVDDKIH 1067
            KHMVDDKIH
Sbjct: 541  KHMVDDKIH 549


>gi|46277269|gb|AAS86825.1| RNA polymerase II second largest subunit, partial [Platanus
            orientalis]
          Length = 536

 Score = 1074 bits (2777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/540 (93%), Positives = 526/540 (97%), Gaps = 4/540 (0%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHR+PE+LV TLR+LRR+VDVNTEVGV+RDI LKELR+YTDYGRCSRPLFIVEKQRL
Sbjct: 61   WVGIHRNPELLVNTLRKLRRQVDVNTEVGVIRDIHLKELRLYTDYGRCSRPLFIVEKQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK+DI ALQQR    DGGWHDLVAKG+IEY+DTEEEETTMISMTINDLV ARL+PEEA
Sbjct: 121  LIKKKDIRALQQR----DGGWHDLVAKGYIEYVDTEEEETTMISMTINDLVTARLNPEEA 176

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 177  YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 236

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 237  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 296

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 297  LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 356

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KTTPI+Q+E QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQ
Sbjct: 357  KTTPIAQEEPQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 416

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 417  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 476

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 477  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 536


>gi|56694372|gb|AAW22926.1| RNA polymerase II second largest subunit [Illicium anisatum]
          Length = 539

 Score = 1073 bits (2776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/541 (93%), Positives = 530/541 (97%), Gaps = 2/541 (0%)

Query: 527  GLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDP 586
            GLVKNLALMVY+TVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+P
Sbjct: 1    GLVKNLALMVYVTVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNP 60

Query: 587  EMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDII 646
            E+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI 
Sbjct: 61   ELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIR 120

Query: 647  ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 706
            ALQQRE+PE+G WHDLVAKGFIEY+DTEEEETTMISMTI+DLV ARL+PEEA ++TYTHC
Sbjct: 121  ALQQRETPEEG-WHDLVAKGFIEYVDTEEEETTMISMTISDLVTARLNPEEAISETYTHC 179

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQK
Sbjct: 180  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQK 239

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
            PLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD
Sbjct: 240  PLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 299

Query: 827  EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 886
            EEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD
Sbjct: 300  EEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQD 359

Query: 887  EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 946
            E QGQASRYTRRDHS  LRHSE+GM+DQVLLTTNADGLRFVKVR+RSVR+PQIGDKFSSR
Sbjct: 360  E-QGQASRYTRRDHSTCLRHSESGMIDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSR 418

Query: 947  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
            HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD
Sbjct: 419  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 478

Query: 1007 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKI
Sbjct: 479  ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKI 538

Query: 1067 H 1067
            H
Sbjct: 539  H 539


>gi|45545317|gb|AAS67506.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Ceramothyrium linnaeae]
          Length = 936

 Score = 1073 bits (2776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/936 (57%), Positives = 664/936 (70%), Gaps = 40/936 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V +F+K  P  + ++AE+RS+ E   R  S    ++  R     G
Sbjct: 1    SEKVLIAQERSAGNIVQIFQKAAPAPFTHLAEIRSVIEKGARMMSQCTAKLYRRVDGPDG 60

Query: 258  SSGQY-IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
            S  +  IR  LPY++ +IP+ IVFRAL  V+D DILE IC+D +D +MM++L  SL+E  
Sbjct: 61   SKIENPIRVQLPYVKQDIPLAIVFRALDIVSDTDILEKICFDQRDQEMMDMLMGSLQEGQ 120

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
             IQ   +A DYI +RG    +   +R K+A +IL KE LPH+G       +KA++ GY++
Sbjct: 121  PIQGADLARDYIARRGNVPSLKSHERQKHAIDILTKEFLPHIGQTSDATARKAFFLGYMV 180

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            +R+L CALGR   DDRDH G KRLDL+GPL+  LFRM   K T+D   Y+QK V++G+ +
Sbjct: 181  NRMLKCALGRTEPDDRDHLGKKRLDLSGPLMANLFRMQLDKATKDFFRYMQKRVESGQTI 240

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
             ++   K   +T+GLKYSLATGNWG Q      +AGVSQVL+R T+ASTLSHLRR N+PI
Sbjct: 241  AIKAGWKPNIVTNGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPI 300

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKNLALM  +T      P+  ++ E  
Sbjct: 301  GREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLALMSMVTNHYDTAPLQSYILEKN 360

Query: 556  TENFEEISPAVIPQATKIFVNGCWVG-IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
             E  E+  P + PQATK+FVNG W   I +DP+ LV   R LRRR  ++TEV +V DIR 
Sbjct: 361  VEALEDWEPHLNPQATKVFVNGVWFAVILKDPKFLVDHFRMLRRRGTIDTEVSLVWDIRD 420

Query: 615  KELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDIIAL--------QQRESPEDG-- 657
            KE +I  D GR  RPLFIVE  R       L++ K  I  L        Q+   P DG  
Sbjct: 421  KEFKISGDSGRIIRPLFIVETDRSSDNHGNLVLNKEHIAKLDETAYHMEQEMGEPADGYY 480

Query: 658  GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL----HPEEA--------------Y 699
             W DL+A G IEY+D EEEET MI M+   L+ +R      P E               +
Sbjct: 481  RWLDLLADGVIEYLDAEEEETVMIVMSPEALLDSRNAQMGQPPEPDDDPLRRNDPLLNPH 540

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
            A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN+  RM+T+A 
Sbjct: 541  AHTFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFDQRMETMAN 600

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            +LYYPQKPL  T AME+L FR+LPAG NAIVAIA YSGYNQEDSVIMNQSSIDRG FRSL
Sbjct: 601  ILYYPQKPLARTMAMEYLKFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSL 660

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            F+R+Y+D+EK +G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+I+GK
Sbjct: 661  FYRAYQDQEKMIGHAVVEQFEKPTRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIMGK 720

Query: 880  TTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            T P++ D E  GQ   ++ +RD S  LR +E+G++DQVLLTT  DG +F KVRVR+ ++P
Sbjct: 721  TAPMAPDAEELGQRMKQHIKRDVSTPLRSTESGVIDQVLLTTTGDGCKFAKVRVRTTKVP 780

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC++ KV
Sbjct: 781  QIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECLLSKV 840

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
             A  G EGDATPFT VTV  IS  L   GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 841  GALRGDEGDATPFTKVTVTQISSILENMGYQRRGFEVMYNGHTGRKLVAQVFLGPTYYQR 900

Query: 1058 LKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            L+HMVDDKIHSR RGP QILTRQP EGR+RDGGLRF
Sbjct: 901  LRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 936


>gi|3002819|gb|AAC08937.1| RPB140 [Chloranthus spicatus]
          Length = 533

 Score = 1069 bits (2764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/534 (94%), Positives = 524/534 (98%), Gaps = 1/534 (0%)

Query: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593
            LMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTL
Sbjct: 1    LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 60

Query: 594  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 653
            R+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRE+
Sbjct: 61   RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRET 120

Query: 654  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 713
             E+G WHDLVAKGFIEY+DTEEEETTMISMTI+DLV ARL+PEEAY++TYTHCEIHPSLI
Sbjct: 121  QEEG-WHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPEEAYSETYTHCEIHPSLI 179

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 180  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 239

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT
Sbjct: 240  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 299

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 893
            LVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDE QGQAS
Sbjct: 300  LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDETQGQAS 359

Query: 894  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
            RYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVR+PQIGDKFSSRHGQKGTV
Sbjct: 360  RYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTV 419

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 420  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 479

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            TVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQRLKHMVDDKIH
Sbjct: 480  TVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIH 533


>gi|56694376|gb|AAW22928.1| RNA polymerase II second largest subunit [Acorus gramineus]
          Length = 536

 Score = 1068 bits (2761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/537 (93%), Positives = 523/537 (97%), Gaps = 1/537 (0%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALMVY+TVGSAA PILEFLEEW TENFEEISPAVIPQAT
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMVYVTVGSAANPILEFLEEWSTENFEEISPAVIPQAT 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNGCWVGIHR+P++LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLF
Sbjct: 61   KIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVEKQRLLIKKR I ALQQRE+ E+G WH+LV KGFIEYIDTEEEETTMISMTINDL+ A
Sbjct: 121  IVEKQRLLIKKRHIRALQQRETQEEG-WHELVTKGFIEYIDTEEEETTMISMTINDLINA 179

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            R +PEEAY+  YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180  RQNPEEAYSSMYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240  LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKTTPI+Q+EAQGQASRYT+RDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+
Sbjct: 360  GEDVIIGKTTPIAQEEAQGQASRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRM 419

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 1048
            CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMI
Sbjct: 480  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMI 536


>gi|6606115|gb|AAF19070.1|AF107798_1 DNA-dependent RNA polymerase II RPB140 [Capronia pilosella]
          Length = 937

 Score = 1066 bits (2758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/940 (56%), Positives = 666/940 (70%), Gaps = 47/940 (5%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VF+K  P  + ++AE+RS+ +   R  S   V++  R     G
Sbjct: 1    SEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGARMMSQCTVKLFRRVDGPDG 60

Query: 258  SS-GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
            +     IR  LPY++ +IP++IVFRAL  V+D DILE IC+D  D +MM++L  SL+E  
Sbjct: 61   TKIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQEGQ 120

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
             IQ   +A D+I +RG    +   +R K+A +ILQKE LPH+G G     +KA++ GY++
Sbjct: 121  AIQGADLARDFIARRGNVPTLKSHERQKHATDILQKEFLPHIGQGPDATARKAFFLGYMV 180

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            +RLL CALGR   DDRDH G KRLDLAGPL+  LFR+ F K T+D   Y+QK V++ + +
Sbjct: 181  NRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFYRYMQKRVESNQPI 240

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            N+    K   ITSGLKYSLATGNWG Q      +AGVSQVL+R T+ASTLSHLRR N+PI
Sbjct: 241  NIMAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPI 300

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL+LM  +T      P+L ++    
Sbjct: 301  GREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNTYETGPLLNYILTKH 360

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGI-HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
             E  E+  P + PQATK+FV+G W  +  RDP+ LV  LR+LRR+   +++V +V DIR 
Sbjct: 361  VEALEDWEPRLNPQATKVFVDGVWFAVVLRDPKRLVDDLRKLRRKGVFDSQVSLVWDIRD 420

Query: 615  KELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDIIALQQRESPEDGG--------- 658
            KE +I  D GR  RPLFIVE  R       L++ K  I  L Q    ++GG         
Sbjct: 421  KEFKISGDSGRIVRPLFIVETDRASENLGNLVLNKDHISKLDQTAYLKEGGFQWTDEIRP 480

Query: 659  --WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR---------------------LHP 695
              W+DL+  G +EY+D EEEET MI MT   L  ++                     L+P
Sbjct: 481  YGWNDLLESGVVEYLDAEEEETAMIIMTPEALSDSKAKWLGMEIENEDDPLRRNDPLLNP 540

Query: 696  EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
               ++ T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+
Sbjct: 541  ---HSHTFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRME 597

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL  T AM++L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG 
Sbjct: 598  TMANILYYPQKPLARTMAMDYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGL 657

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLF+R+Y+D EK +G  V E F +P R++T+ ++HG+YDK+D+DG+  PG RVSGED+
Sbjct: 658  FRSLFYRTYQDSEKSVGHSVMEQFEKPTRTDTLRLKHGTYDKIDEDGIVAPGVRVSGEDI 717

Query: 876  IIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            I+GKT P++ D E  GQ  + + +RD S  LR +E+G+VDQV+LTT  DG RF KVRVR+
Sbjct: 718  IMGKTAPMAPDAEELGQRQKQHIKRDVSTPLRSTESGIVDQVMLTTTNDGHRFAKVRVRT 777

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             + PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC 
Sbjct: 778  TKTPQIGDKFASRHGQKGTIGITYRTEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQ 837

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1053
            + KVA   G EGDATPFT VTV  +S  L + GYQ RGFE MYNGHTGR+L A +FLGPT
Sbjct: 838  LSKVATLRGDEGDATPFTKVTVTQVSDLLRRMGYQSRGFEVMYNGHTGRKLVAQVFLGPT 897

Query: 1054 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            YYQRL+HMVDDKIHSR RGP QILTRQP EGR+RDGGLRF
Sbjct: 898  YYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 937


>gi|56694296|gb|AAW22888.1| RNA polymerase II second largest subunit [Psilotum nudum]
          Length = 573

 Score = 1061 bits (2745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/574 (86%), Positives = 529/574 (92%), Gaps = 1/574 (0%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALM YITVGSAA PILEFLEEW TENFEEISPAVIPQAT
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMSYITVGSAANPILEFLEEWSTENFEEISPAVIPQAT 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFV GCWVGIHRDPE+LV+TLR+LRR+VDV TEVGVVRDIRLKELR+YTDYGRCSRPLF
Sbjct: 61   KIFVXGCWVGIHRDPELLVRTLRQLRRQVDVXTEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVE QRLLIKK  I ALQQ+ES     W+DLVAKGFIEY+DTEEEETTMISM  +D   A
Sbjct: 121  IVENQRLLIKKSHIRALQQKES-TXSAWYDLVAKGFIEYVDTEEEETTMISMNXSDXEAA 179

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            R HPEEAY+DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNT QSAMGKQAMGIYVTNYQ
Sbjct: 180  RDHPEEAYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTXQSAMGKQAMGIYVTNYQ 239

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDTLAYVL+YPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSSI
Sbjct: 240  LRMDTLAYVLFYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSI 299

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRS+F+RSYRDEE K GTLVKE+F RP+R     MRHGSYDKL  DGL PPGTRVS
Sbjct: 300  DRGFFRSIFYRSYRDEEXKQGTLVKEEFERPNRETXTNMRHGSYDKLXXDGLTPPGTRVS 359

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKTTP+SQD+   QA RY++RD S  LR SE+GM+DQVLLTTNADGLRFVK+RV
Sbjct: 360  GEDVIIGKTTPLSQDDTGNQAQRYSKRDQSTCLRXSESGMIDQVLLTTNADGLRFVKIRV 419

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RS+R+PQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGI+PDIIVNPHAIPSRMTIGQLIE
Sbjct: 420  RSIRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGISPDIIVNPHAIPSRMTIGQLIE 479

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            CIMGKVAAHMG+EGDATPFTDVTVD+ISKALHKCGYQMRGFETMYNGHT R L AMIF+G
Sbjct: 480  CIMGKVAAHMGREGDATPFTDVTVDSISKALHKCGYQMRGFETMYNGHTXRXLNAMIFIG 539

Query: 1052 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR
Sbjct: 540  PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 573


>gi|47156741|gb|AAT12267.1| RNA polymerase II second largest subunit [Diapensia lapponica]
          Length = 541

 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/541 (91%), Positives = 526/541 (97%)

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TENFEEISPAVIPQATKIFVNG
Sbjct: 1    AETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQATKIFVNG 60

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 637
             WVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQR
Sbjct: 61   SWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQR 120

Query: 638  LLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 697
            LLI+K+DI+ALQQRE+PE+GGWHDLV KGFIEY+DTEEEETTMISMTI DLV AR++P++
Sbjct: 121  LLIRKKDILALQQRETPEEGGWHDLVGKGFIEYVDTEEEETTMISMTIKDLVSARINPDD 180

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
            A ++T+THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTL
Sbjct: 181  ALSETFTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTL 240

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            AYVLYYPQKPLV TRAMEHLHFRQLPAGINA VAIACYSGYNQEDS+IMNQSSIDRGFFR
Sbjct: 241  AYVLYYPQKPLVITRAMEHLHFRQLPAGINATVAIACYSGYNQEDSLIMNQSSIDRGFFR 300

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLFFRSYRDEEKKMGTLVKEDFG P+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII
Sbjct: 301  SLFFRSYRDEEKKMGTLVKEDFGCPNRDNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 360

Query: 878  GKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            GKTTPI+ D+A GQ SRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIP
Sbjct: 361  GKTTPIAPDDATGQNSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIP 420

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKV
Sbjct: 421  QIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 480

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            AAHMGKEGDATPFT+VTVDNISKALHKCGYQMRGFETMYNGHTGR+LT+MIFLGPTYYQR
Sbjct: 481  AAHMGKEGDATPFTEVTVDNISKALHKCGYQMRGFETMYNGHTGRQLTSMIFLGPTYYQR 540

Query: 1058 L 1058
            L
Sbjct: 541  L 541


>gi|45545359|gb|AAS67527.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Aureobasidium pullulans]
          Length = 937

 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/940 (55%), Positives = 665/940 (70%), Gaps = 47/940 (5%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VF+K  P  + ++AE+RS+ +   R  S   V++  R     G
Sbjct: 1    SEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGARMMSQCTVKLFRRVDGPDG 60

Query: 258  SS-GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
            +     IR  LPY++ +IP++IVFRAL  V+D DILE IC+D  D +M+++L  SL+E  
Sbjct: 61   TKIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMLDMLMGSLQEGQ 120

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
             IQ   +A D+I +RG    +   +R K+A +ILQKE LPH+G G     +KA++ GY++
Sbjct: 121  PIQGADLARDFIARRGNIPTLKSHERQKHAMDILQKEFLPHIGQGPDVAARKAFFLGYMV 180

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            +RLL CALGR   DDRDH G KRLDLAGPL+  LFR+ F K T+D   Y+QK V+ G+ +
Sbjct: 181  NRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFFRYMQKRVEAGQAI 240

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            N+    K   +TSGLKYSLATGNWG Q      +AGVSQVL+R T+ASTLSHLRR N+PI
Sbjct: 241  NIHAGFKHPIVTSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPI 300

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL+LM  +T      P++ ++    
Sbjct: 301  GREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETLPLMNYVLTKH 360

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGI-HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
             E  E+  P + PQATK+FV+G W  +  RDP+ LV  LR+LRR+   +++V +V DIR 
Sbjct: 361  VEALEDWEPRLNPQATKVFVDGVWFAVVLRDPKRLVDDLRKLRRKGVFDSQVSLVWDIRE 420

Query: 615  KELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDIIALQQRESPEDGG--------- 658
            KE +I  D GR  RPLF+VE  R       L++ K  I  + Q    ++ G         
Sbjct: 421  KEFKISGDSGRIVRPLFVVETDRASENLGNLVLNKDHITKIDQTNYLKESGFNFTDEFKP 480

Query: 659  --WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR---------------------LHP 695
              W DL+  G +EY+D EEEET M+ MT   L  ++                     L+P
Sbjct: 481  YGWQDLLESGVVEYLDAEEEETAMLVMTPEALADSKARWLGMEIESEDDPLSRNDPLLNP 540

Query: 696  EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
               ++ T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+
Sbjct: 541  ---HSHTFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRME 597

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL  T AM++L FR+LPAG NAIVAIA YSGYNQEDSVIMNQSSIDRG 
Sbjct: 598  TMANILYYPQKPLARTMAMDYLKFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGL 657

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLF+R+Y+D+EK +G  V E F RP R++T+ ++HG+YDK+D+DG+  PG RVSGED+
Sbjct: 658  FRSLFYRAYQDQEKSVGHSVVEQFERPTRADTLRLKHGTYDKIDEDGIVAPGVRVSGEDI 717

Query: 876  IIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            I+GKT P++ D E  GQ  + + +RD S  LR +E+G+VDQV+LTT +DG RF KVRVR+
Sbjct: 718  IMGKTAPMAPDAEELGQRQKQHVKRDVSTPLRSTESGIVDQVMLTTTSDGHRFAKVRVRT 777

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T  GI PD+I+NPHAIPSRMTI  LIEC 
Sbjct: 778  TKVPQIGDKFASRHGQKGTIGITYRHEDMPFTRGGIVPDLIINPHAIPSRMTIAHLIECQ 837

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1053
            + KVA   G EGDATPFT VTV  +S  L K GYQ RGFE MYNGHTGR+L A +FLGPT
Sbjct: 838  LSKVATLRGDEGDATPFTKVTVTQVSDLLRKMGYQSRGFEVMYNGHTGRKLVAQVFLGPT 897

Query: 1054 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            YYQRL+HMVDDKIHSR RGP QILTRQP EGR+RDGGLRF
Sbjct: 898  YYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 937


>gi|56694330|gb|AAW22905.1| RNA polymerase II second largest subunit [Welwitschia mirabilis]
          Length = 553

 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/556 (90%), Positives = 525/556 (94%), Gaps = 3/556 (0%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALMVYITVGS+A PILEFLEEWGTENFEE+SP+ IP AT
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMVYITVGSSANPILEFLEEWGTENFEEVSPSNIPNAT 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNGCWVGIHR PE LVKTL++LRR+VDVN EVGVVRDI L+ELR+YTDYGRCSRPLF
Sbjct: 61   KIFVNGCWVGIHRYPETLVKTLKQLRRQVDVNPEVGVVRDIPLRELRLYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            +VEKQ+LLIKK  II LQ+R SP D GWHDLVAKGFIEY+DTEEEETTMISMTI DLVQA
Sbjct: 121  VVEKQQLLIKKSHIIRLQERMSP-DEGWHDLVAKGFIEYVDTEEEETTMISMTITDLVQA 179

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            R +P EAY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180  RKNPLEAYSHTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240  LRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRSLFFRSYRDEEK+MGTLVKE+FGRP R NT GMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300  DRGFFRSLFFRSYRDEEKRMGTLVKEEFGRPSRDNTAGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKTTP +QDE  G   RYTRRD S S+RHSE+GMVDQVLLTTN DGLRFVK+R+
Sbjct: 360  GEDVIIGKTTPTNQDENAG--GRYTRRDQSTSMRHSESGMVDQVLLTTNQDGLRFVKIRM 417

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RSVRIPQIGDKFSSRHGQKGTVGMTY QEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 418  RSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIE 477

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG
Sbjct: 478  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 537

Query: 1052 PTYYQRLKHMVDDKIH 1067
            PTYYQRLKHMVDDKIH
Sbjct: 538  PTYYQRLKHMVDDKIH 553


>gi|6606111|gb|AAF19068.1|AF107796_1 DNA-dependent RNA polymerase II RPB140 [Exophiala jeanselmei]
          Length = 937

 Score = 1061 bits (2743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/937 (56%), Positives = 666/937 (71%), Gaps = 41/937 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VF+K  P  + ++AE+RS+ +   R  S   V++  R     G
Sbjct: 1    SEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGARMMSQCTVKLFRRVDGPDG 60

Query: 258  SS-GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
            +     IR  LPY++ +IP++IVFRAL  V+D DILE IC+D  D +M+++L  SL+E  
Sbjct: 61   TKIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMLDMLMGSLQEGQ 120

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
             IQ+  +A D+I +RG    +   +R K+A +ILQKE LPH+G G    TKKA++ GY++
Sbjct: 121  PIQSADLARDFIARRGNIPTLKSHERQKHAIDILQKEFLPHIGQGPDVATKKAFFLGYMV 180

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            +RLL  ALGR   DDRDH G KRLDLAGPL+  LFR+ F K T+D   Y+QK V+ G+ +
Sbjct: 181  NRLLKAALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFFRYMQKRVEAGQPI 240

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            ++    K   ITSGLKYSLATGNWG Q      +AGVSQVL+R T+ASTLSHLRR N+PI
Sbjct: 241  SIHAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPI 300

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL+LM  +T      P+  ++    
Sbjct: 301  GREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETEPLRAYVLNKH 360

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGI-HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
             +  EE  P + PQATKIF++G W  +  RDP+ LV  LRRLRR+   + +V +V DIR 
Sbjct: 361  VDAIEEWEPRLNPQATKIFIDGVWFAVVLRDPKRLVDDLRRLRRQGTFDAQVSLVWDIRE 420

Query: 615  KELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDIIALQQRESPEDGG--------- 658
            KE RI  D GR  RPLF+VE  +       L++ K  I  L Q    ++ G         
Sbjct: 421  KEFRISGDSGRIIRPLFVVETDKASENVGNLVLNKEHINKLDQTNYLKESGYQFNDEVSA 480

Query: 659  --WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR---LHPE-EAYAD----------- 701
              W DL+  G +EY+D EEEET MI MT   L  ++   L  E E + D           
Sbjct: 481  YGWDDLLKAGVVEYLDAEEEETAMIVMTPEVLADSKARWLGIEIENFDDPLGRNEPLLTP 540

Query: 702  ---TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
               ++THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+T+A
Sbjct: 541  NSHSFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMA 600

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
             +LYYPQKPL  T AM++L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRS
Sbjct: 601  NILYYPQKPLARTMAMDYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 660

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LF+R+Y+D+EK +G  V E F +P R++T+ ++HG+YDK+D+DG+  PG RVSGED+I+G
Sbjct: 661  LFYRAYQDQEKSVGHAVIESFEKPTRADTLRLKHGTYDKIDEDGIVAPGVRVSGEDIIMG 720

Query: 879  KTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 936
            KT P++ D E  GQ  + + +RD S  LR +E+G+VDQV+LTT  DG RF KVRVR+ ++
Sbjct: 721  KTAPMAPDAEELGQRQKQHVKRDVSTPLRSTESGIVDQVMLTTTNDGHRFAKVRVRTTKV 780

Query: 937  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 996
            PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + K
Sbjct: 781  PQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK 840

Query: 997  VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            VA   G+EGDATPFT VTV  IS  L K GYQ RGFE MYNGHTG++L A +FLGPTYYQ
Sbjct: 841  VATLRGEEGDATPFTKVTVTQISDILRKMGYQSRGFEVMYNGHTGKKLVAQVFLGPTYYQ 900

Query: 1057 RLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            RL+HMVDDKIHSR RGP QILTRQP EGR+RDGGLRF
Sbjct: 901  RLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 937


>gi|2736127|gb|AAB94064.1| RPB140 [Marchantia polymorpha]
          Length = 555

 Score = 1059 bits (2739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/556 (89%), Positives = 524/556 (94%), Gaps = 1/556 (0%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALM +ITVGSAA PILEFLEEW TENFEEISPAVIPQ+T
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMAHITVGSAANPILEFLEEWSTENFEEISPAVIPQST 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNGCWVGIHRDPE+LV+TLR+LRR+VDVN EVGVVRDIRLKELR+YTDYGRCSRPLF
Sbjct: 61   KIFVNGCWVGIHRDPELLVRTLRQLRRQVDVNPEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVEKQRLLIKK D+ ALQ +E+ E G WH+LVAKGFIEY+DTEEEETTMISMTI+DLV A
Sbjct: 121  IVEKQRLLIKKSDVRALQLKEASESG-WHELVAKGFIEYVDTEEEETTMISMTISDLVNA 179

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            R +PEEAY+ TYTHCEIHPS+ILGVC SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ
Sbjct: 180  RNNPEEAYSKTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 239

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDTLAYVLYYPQKPLVTT+AM HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240  LRMDTLAYVLYYPQKPLVTTQAMAHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRS+F+RSYRDEEKK GTLVKE+F RP+R NT GMRHGSYDKLDDDGLAPPGTRVS
Sbjct: 300  DRGFFRSIFYRSYRDEEKKQGTLVKEEFERPNRENTTGMRHGSYDKLDDDGLAPPGTRVS 359

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            GEDVIIGKTTP+ QDE   QA RYT+RD S  LRHSE+GM+DQVLLTTNADGLRFVK+RV
Sbjct: 360  GEDVIIGKTTPLPQDETGSQAQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRV 419

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420  RSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGRRL A IFLG
Sbjct: 480  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFEVMYNGHTGRRLYAHIFLG 539

Query: 1052 PTYYQRLKHMVDDKIH 1067
            PTYYQRLKHMVDDKIH
Sbjct: 540  PTYYQRLKHMVDDKIH 555


>gi|56694362|gb|AAW22921.1| RNA polymerase II second largest subunit [Pseudotsuga menziesii]
          Length = 554

 Score = 1058 bits (2736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/555 (89%), Positives = 525/555 (94%), Gaps = 1/555 (0%)

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590
            NLALMVYITVGS+  PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDPE+LV
Sbjct: 1    NLALMVYITVGSSPNPILEFLEEWSTENFEEISPAVIPTATKIFVNGCWVGIHRDPELLV 60

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
            KTLR+LRR+VDVN EVGVVRDIRLKELR+YTDYGRCSRPLF+VEKQRL IKK DI  LQ+
Sbjct: 61   KTLRQLRRQVDVNPEVGVVRDIRLKELRLYTDYGRCSRPLFVVEKQRLSIKKSDITRLQE 120

Query: 651  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 710
            R + E+G WHDLV +GFIEY+DTEEEETTMISMTINDLV AR +P EAY+ TYTHCEIHP
Sbjct: 121  RTTTEEG-WHDLVTRGFIEYVDTEEEETTMISMTINDLVSARNNPAEAYSHTYTHCEIHP 179

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVT
Sbjct: 180  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVT 239

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+
Sbjct: 240  TRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKR 299

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 890
            MGTLVKE+FG P+R NT+ MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++Q+E  G
Sbjct: 300  MGTLVKEEFGCPNRENTLNMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVTQEETSG 359

Query: 891  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
            Q  RY RRD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQK
Sbjct: 360  QQQRYIRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQK 419

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF
Sbjct: 420  GTVGMTYTQEDMPWTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 479

Query: 1011 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 1070
            TDVTVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRG
Sbjct: 480  TDVTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRG 539

Query: 1071 RGPVQILTRQPAEGR 1085
            RGPVQILTRQPAEGR
Sbjct: 540  RGPVQILTRQPAEGR 554


>gi|46277253|gb|AAS86817.1| RNA polymerase II second largest subunit, partial [Sequoia
            sempervirens]
          Length = 556

 Score = 1057 bits (2734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/559 (89%), Positives = 531/559 (94%), Gaps = 3/559 (0%)

Query: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593
            LMVYITVGS+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+TL
Sbjct: 1    LMVYITVGSSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVRTL 60

Query: 594  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 653
            R+LRR+VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL I+K+DI  LQ   S
Sbjct: 61   RQLRRQVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIRKQDINNLQ--AS 118

Query: 654  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 713
             EDG WH+L+ +G IEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSLI
Sbjct: 119  REDG-WHELITQGCIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLI 177

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 178  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 237

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+ GT
Sbjct: 238  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRAGT 297

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 893
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++ GQ S
Sbjct: 298  LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSAGQVS 357

Query: 894  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
            +Y +RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 358  KYPKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 417

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 418  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 477

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 478  TVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 537

Query: 1074 VQILTRQPAEGRSRDGGLR 1092
            VQILTRQPAEGRSRDGGLR
Sbjct: 538  VQILTRQPAEGRSRDGGLR 556


>gi|45120580|gb|AAO64681.2| RNA polymerase II subunit RPB2, partial [Stereum hirsutum]
          Length = 801

 Score = 1057 bits (2734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/803 (62%), Positives = 629/803 (78%), Gaps = 29/803 (3%)

Query: 226  YVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGF 285
            ++AE+RS  E   +  S   V+M  R   K  +SG  I+AT+PYI+ +IPI +VFRALG 
Sbjct: 2    FLAEIRSAVEKGGKTISQFQVKMYHRNQDK--TSGNVIKATIPYIKVDIPIWVVFRALGV 59

Query: 286  VADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKY 345
            ++D+DILEHICYD +D QM+E+L+P +++ FVIQ++++ALD+IG RG T G++R++R++Y
Sbjct: 60   ISDRDILEHICYDMEDAQMLEMLKPCIDDGFVIQDREIALDFIGNRGTTTGLSRERRLRY 119

Query: 346  AKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 405
            A+EILQKEMLPH+   +  E+KKAY+FGY+IHRLLL  + RR  DDRDH+G KRLDLAGP
Sbjct: 120  AQEILQKEMLPHISMSEGSESKKAYFFGYMIHRLLLAGMERRELDDRDHFGKKRLDLAGP 179

Query: 406  LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QAN 464
            LL  LFRMLFRKLTRDV  Y+QKCV+  KD NL  A+K  TIT+GLKYSLATGNWG Q  
Sbjct: 180  LLANLFRMLFRKLTRDVYRYLQKCVETHKDFNLNLAVKHNTITNGLKYSLATGNWGDQKK 239

Query: 465  AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 524
            +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQ
Sbjct: 240  SMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 299

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            ACGLVKNL+LM  I+VGS + P+++FLEEWG E+ EE + +  P  TK+FVNG W+G+HR
Sbjct: 300  ACGLVKNLSLMATISVGSLSLPVIDFLEEWGLESLEENAHSATP-TTKVFVNGVWMGVHR 358

Query: 585  DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 644
            DP  L+KT+++LRR+ D++ EV +VRDIR +ELR+YTD GR  RPLF+VE Q L + K+ 
Sbjct: 359  DPANLIKTIKKLRRKDDIHPEVSIVRDIRERELRLYTDAGRVCRPLFVVEDQXLAVTKKH 418

Query: 645  IIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HP 695
            I  L +   ++ E+  W++L+  G +EY+D EEEET MI MT  DL  +RL       H 
Sbjct: 419  INMLTRGTDDNGEEFKWNNLIKSGVVEYLDAEEEETVMICMTPEDLENSRLQSSGINPHA 478

Query: 696  EEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741
            E++  D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 479  EDSDFDPAARLKASSGLNTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQ 538

Query: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801
            AMGIY TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQE
Sbjct: 539  AMGIYXTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQE 598

Query: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 861
            DSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DD
Sbjct: 599  DSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDD 658

Query: 862  GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTT 919
            GL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TT
Sbjct: 659  GLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRIHTRRDVSTPLKSTESGIVDQVLITT 718

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
            N +G +FVKVRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI++NPHA
Sbjct: 719  NHEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHA 778

Query: 980  IPSRMTIGQLIECIMGKVAAHMG 1002
            IPSRMTIG L+EC++ KVA  +G
Sbjct: 779  IPSRMTIGHLVECLLSKVATLIG 801


>gi|154342160|ref|XP_001567028.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            braziliensis MHOM/BR/75/M2904]
 gi|134064357|emb|CAM42447.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1185

 Score = 1057 bits (2734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1189 (44%), Positives = 774/1189 (65%), Gaps = 50/1189 (4%)

Query: 13   QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
            ++++E+  +++  ED W VIS++F EKGLV QQLDS+++F+    + I  ES  +  R +
Sbjct: 23   ERDDENPNDDLDSEDIWEVISSFFREKGLVHQQLDSYNDFLMRIPKMI--ESMAVIPRQD 80

Query: 73   SQHNPGQQSDFAETIYKISFGQIYLSKPMMTE----SDGETATLFPKAARLRNLTYSAPL 128
             Q++PG   +      ++    + +  P        + G    LFP   RLR++TY A  
Sbjct: 81   DQYDPGVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQA 140

Query: 129  YVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
             V +    ++  H   +         V +G++PIML+S  C L    E +L  L ECP+D
Sbjct: 141  QVTLG---VELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHD 197

Query: 189  QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
            QGGYF+ING+EKVLIAQE+ + NHVY F +++      + EV+S+ E     P T+ + M
Sbjct: 198  QGGYFVINGTEKVLIAQERQAANHVYTFSRQK----GLLCEVKSIVEGSLNKPRTLQIIM 253

Query: 249  LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
              R    G S  + +   +  +   IP+ ++FRA+  VADK+IL+ +  D +DT M+ELL
Sbjct: 254  PYRNRGPG-SGFESLMCRVAQMDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELL 312

Query: 309  RPSLEEAFVIQ--NQQVALDYIGKR----GATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
            R S+ +A  +Q   ++ AL YIG+R     A   + R+     A+ +L +++LPH+GT  
Sbjct: 313  RGSMSDASTLQIFTREEALGYIGRRLGKQDAMANLQRE-----AESLLMRDLLPHMGTDP 367

Query: 363  FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
                 K  Y GY++H+LLL ALGR  E DRD  G+KR+D+AG LL    +    ++ +++
Sbjct: 368  SANRTKCLYMGYMVHKLLLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEM 427

Query: 423  RAYVQKCVDNGKDV-NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 481
               +Q    N + V +    I ++ +T GL+  LATGN+G       + GV+Q LNRLTY
Sbjct: 428  IKTLQDHAANPRGVFSFGRVIHSRLVTDGLRRCLATGNFGDLKTGNIKTGVAQTLNRLTY 487

Query: 482  ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
            +S+LS+LRR+ +PI    K  +PR LH +QWG +CP ETPEG + GL+KN+ALM  ++ G
Sbjct: 488  SSSLSNLRRIQNPIAASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRG 547

Query: 542  SAAYPILEFLEE----WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLR 597
            +    +++ ++     + T   E+ +     +  ++FVNG  +G+ R+PE L+  LR  R
Sbjct: 548  TDHAEVVQAVQARIDGFRTIGLEDTADV---RVARVFVNGTMIGVDRNPERLLHDLRTRR 604

Query: 598  RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK---RDIIALQQRESP 654
            R  +++ EV +VRDIR +E+R+++D GRC RPLF+VE   L ++K   RD++  ++    
Sbjct: 605  RNGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVENCHLKLRKSSMRDLLVSEKAGGK 664

Query: 655  EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLIL 714
            +   W+ ++ KG++E ID EEE++ +++MT +++       E+ Y   Y+HCE+ PS+IL
Sbjct: 665  KSISWNTVLKKGYVELIDCEEEDSLLVAMTPSEV-------EKNYY--YSHCEMDPSMIL 715

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            G+CASIIP+P+HNQSPRNTYQSAMGKQAMGIY +N+  RMDT A+VL+YPQKPLV T+AM
Sbjct: 716  GICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAM 775

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
             ++H   LPAG NA+VAI+CYSGYNQEDS+IM++S+++RGFFRS F+RS++ +E++    
Sbjct: 776  TYMHSNDLPAGHNAVVAISCYSGYNQEDSIIMSRSAVERGFFRSAFWRSFKAKEERQKRD 835

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ---DEAQGQ 891
              E F  P+R     ++   Y KLD DGL  PG RV G DV++GKT P+ +   D+    
Sbjct: 836  ALETFENPNRE-VCRVKRADYSKLDTDGLIKPGMRVLGGDVVVGKTIPLPEADLDKLTTG 894

Query: 892  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
             ++ T+RD SI+ R +E G+V++V+LT N+   RF KV++R+++IP IGDKF SRHGQKG
Sbjct: 895  NTKITKRDASITSRTTEKGVVEKVMLTMNSSD-RFAKVKIRTIKIPNIGDKFCSRHGQKG 953

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T G+ + QEDMP+  +G+ PD+I+NPHAIPSRMT+  LIE + GKVA + G E  ATPF 
Sbjct: 954  TNGIQFRQEDMPFNRDGVVPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEVYATPFC 1013

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
             V VD+  KALH  G Q  G E +YNGHTG  L  +IF GPT+YQRLKH+  DKIH+R R
Sbjct: 1014 SVVVDDFGKALHALGSQRYGNECLYNGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPR 1073

Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
            GP+Q L RQP EGR+ +GGLRFGEMERDCM+++GAS +L+ERLF  SD Y VHVC HCG 
Sbjct: 1074 GPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNHCGT 1133

Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I +A+ K N ++C+GC+N T I QV +PYACKLLFQELM+M I PR+ T
Sbjct: 1134 ICVADTKLNRYQCKGCENDTRISQVLMPYACKLLFQELMSMTILPRLGT 1182


>gi|358030894|dbj|BAL15356.1| RNA polymerase II second largest subunit, partial [Olpidium
            bornovanus]
          Length = 895

 Score = 1056 bits (2732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/885 (58%), Positives = 646/885 (72%), Gaps = 77/885 (8%)

Query: 258  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            SSGQYIR +LPY+  +IP+ IVFRALG +    IL+ +CYD +D QMMELL+PS+EE   
Sbjct: 11   SSGQYIRTSLPYVNQDIPVXIVFRALGVLPXAHILQQVCYDMEDDQMMELLKPSIEEGHS 70

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+Q+VALD+IGKRG+ VG+TR+KR+KYA EI  KE LPHV         K+++FGY+IH
Sbjct: 71   IQDQEVALDFIGKRGSAVGLTREKRVKYAMEIFVKEFLPHVDDYVTSAAHKSFFFGYMIH 130

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RL + AL RR  DDRDHYG KR+DLAGPL+ GLFR LFRK+T D+ A+++KC+D  ++ N
Sbjct: 131  RLCMAALERRELDDRDHYGKKRMDLAGPLISGLFRNLFRKMTTDIGAHLRKCMDQNREFN 190

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            L  A+K+  IT+GLKYSLATGNWG Q  A  +RAGVSQVLNR T+ASTLSHLRR N+PIG
Sbjct: 191  LTLAVKSNHITNGLKYSLATGNWGDQQRAMQSRAGVSQVLNRYTFASTLSHLRRCNTPIG 250

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNL+++ Y++VG+ ++ + +  EE G 
Sbjct: 251  RDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSMLSYVSVGAKSHVVRQIFEESGV 310

Query: 557  ENFEEISPAVIPQ----ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
            +  +E S   + Q      K+F+NG WVG+  DP  L++ LR L+ + D N E+  VRD+
Sbjct: 311  QYLDE-SDQEMEQLRLDTIKVFLNGGWVGMISDPTKLLQALRGLKCQPDRNFEISFVRDV 369

Query: 613  RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ---------------------- 650
            R +E+R++TD+GRC RPLF+V++ RL+IKK  I AL                        
Sbjct: 370  RDREIRVFTDHGRCMRPLFVVKEGRLVIKKSHIRALTNPVRLSIFWRKLSIXSAYCVHGV 429

Query: 651  -----------RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL----------- 688
                       ++  +   W DLV    +EY+D EEEET MI M+  DL           
Sbjct: 430  DISMSAYIFECQDFEQRWKWSDLVMTSIMEYVDAEEEETIMICMSPEDLADSREFSKTGI 489

Query: 689  --------VQARLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
                    + ARL P    +A T+THCE+HP++ILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 490  PQRRLMADMTARLKPVVNTHASTWTHCEVHPAMILGVCASIIPFPDHNQSPRNTYQSAMG 549

Query: 740  KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
            KQAMGIY  NY  RMDTLA +LYYPQKPL TTRAM +L FR LPAG NAI+AIACYSGYN
Sbjct: 550  KQAMGIYALNYXARMDTLANILYYPQKPLATTRAMNYLQFRHLPAGQNAIIAIACYSGYN 609

Query: 800  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM----------------GTLVKEDFGRPD 843
            QEDSVIMNQS+IDRG FRSL++RSY D+EKK+                GT V E F +P 
Sbjct: 610  QEDSVIMNQSAIDRGLFRSLYYRSYMDQEKKVVSVSGARCAGPRACHSGTTVMESFEKPT 669

Query: 844  RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHS 901
            R  T+ ++HG+YDK++ DGL  PGTRVSGED+IIGKTTPI  D E  GQ    +T+RD S
Sbjct: 670  RETTLRLKHGTYDKIEIDGLIAPGTRVSGEDIIIGKTTPIPPDSEELGQRQDTHTKRDAS 729

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
              L+ +ETG+VDQV++TTN++GL+FVKVRVRS R+PQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 730  TPLKSTETGIVDQVMVTTNSEGLKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITYRQED 789

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MP+T +G+TPD+I+NPHAIPSRMTIG L+EC++ KV+   G EGDATPFT+VTV++IS A
Sbjct: 790  MPFTADGLTPDLIINPHAIPSRMTIGHLVECLLSKVSTLGGSEGDATPFTNVTVESISAA 849

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            L   GYQ RGFE MY+GHTGR+L A IFLGPTYYQRLKHMVDDKI
Sbjct: 850  LEAHGYQKRGFEVMYHGHTGRKLGAQIFLGPTYYQRLKHMVDDKI 894


>gi|56694346|gb|AAW22913.1| RNA polymerase II second largest subunit [Taxus brevifolia]
          Length = 549

 Score = 1056 bits (2730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/552 (90%), Positives = 526/552 (95%), Gaps = 3/552 (0%)

Query: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593
            LMVYITVGS+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LVKTL
Sbjct: 1    LMVYITVGSSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVKTL 60

Query: 594  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 653
            R+LRR+VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK DI  LQ   S
Sbjct: 61   RQLRRQVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIKKADINNLQ--AS 118

Query: 654  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 713
             EDG WH+LV +GFIEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSLI
Sbjct: 119  REDG-WHELVTQGFIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLI 177

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 178  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 237

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGT
Sbjct: 238  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGT 297

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 893
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDEA GQ S
Sbjct: 298  LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAGGQVS 357

Query: 894  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
            +YT+RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 358  KYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 417

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 418  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 477

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 478  TVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 537

Query: 1074 VQILTRQPAEGR 1085
            VQILTRQPAEGR
Sbjct: 538  VQILTRQPAEGR 549


>gi|389594282|ref|XP_001685000.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
            strain Friedlin]
 gi|321399803|emb|CAJ08180.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
            strain Friedlin]
          Length = 1185

 Score = 1056 bits (2730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1189 (45%), Positives = 769/1189 (64%), Gaps = 50/1189 (4%)

Query: 13   QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
            + ++E+  +++  ED W VIS++F EKGLV QQLDS+++F+    + I  ES  +  R +
Sbjct: 23   EHDDENPNDDLDSEDIWEVISSFFREKGLVHQQLDSYNDFLMRIPKMI--ESMAVIPRQD 80

Query: 73   SQHNPGQQSDFAETIYKISFGQIYLSKPMMTE----SDGETATLFPKAARLRNLTYSAPL 128
             Q++PG   +      ++    + +  P        + G    LFP   RLR++TY A  
Sbjct: 81   DQYDPGVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFTGGPLPPLFPNECRLRDMTYDAQA 140

Query: 129  YVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
             V +    ++  H   +         V +G++PIML+S  C L    E +L  L ECP+D
Sbjct: 141  QVTLG---VELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHD 197

Query: 189  QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
            QGGYF+ING+EKVLIAQE+ + NHVY F +++      + EV+S+ E     P T+ + M
Sbjct: 198  QGGYFVINGTEKVLIAQERQAANHVYTFSRQK----GLLCEVKSIVEGSLNKPRTLQIIM 253

Query: 249  LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
              R    G S  + +   +  +   IP+ ++FRA+  VADK+IL+ +  D +DT M+ELL
Sbjct: 254  QYRNKGPG-SGFENLMCRVAQMDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELL 312

Query: 309  RPSLEEAFVIQ--NQQVALDYIGKR----GATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
            R S+ +A  +Q   ++ AL YIG+R     A   + R+     A+ +L +++LPH+GT  
Sbjct: 313  RGSMSDASTLQIFTREEALGYIGRRLGKQDAMANLQRE-----AESLLMRDLLPHMGTDP 367

Query: 363  FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
                 K  Y GY++H+LLL ALGR  E DRD  G+KR+D+AG LL    +    ++ +++
Sbjct: 368  SANRTKCLYMGYMVHKLLLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEM 427

Query: 423  RAYVQKCVDNGKDV-NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 481
               +Q    N + V +    I +K IT GL+  LATGN+G       + GV+Q LNRLTY
Sbjct: 428  IKTLQDHAANPRGVFSFGRVIHSKLITDGLRRCLATGNFGDLKTGNIKTGVAQTLNRLTY 487

Query: 482  ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
            +S+LS+LRR+ +PI    K  +PR LH +QWG +CP ETPEG + GL+KN+ALM  ++ G
Sbjct: 488  SSSLSNLRRIQNPIAASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRG 547

Query: 542  SAAYPILEFLEE----WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLR 597
            +    +++ ++     + T   E+ +     +  ++FVNG  +G+ R+PE L+  LR  R
Sbjct: 548  TDHAEVVQAVQARIDGFRTIGLEDTADV---RVARVFVNGTMIGVDRNPERLLHDLRTRR 604

Query: 598  RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK---RDIIALQQRESP 654
            R  +++ EV +VRDIR +E+R+++D GRC RPLF+ E  RL ++K   RD++  ++    
Sbjct: 605  RNGELSNEVSIVRDIRDREIRVFSDAGRCLRPLFVAENCRLKLRKSGMRDLLVSEKAGGK 664

Query: 655  EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLIL 714
            +   W   + KG++E ID EEE++ +I+MT N++       E+ Y   Y+HCE+ PS+IL
Sbjct: 665  KSISWKTALKKGYVELIDCEEEDSLLIAMTPNEV-------EKNYY--YSHCEMDPSMIL 715

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            G+CASIIP+P+HNQSPRNTYQSAMGKQAMGIY +N+  RMDT A+VL+YPQKPLV T+AM
Sbjct: 716  GICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAM 775

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
             ++H   LPAG NA+VAI+CYSGYNQEDS+IM++S+++RGFFRS F+RS++ +E++    
Sbjct: 776  TYMHSNDLPAGHNAVVAISCYSGYNQEDSIIMSRSAVERGFFRSAFWRSFKAKEERQKRD 835

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS- 893
              E F  PDR     ++   Y KLD DGL  PG RV G DV++GKT P+ + + +   + 
Sbjct: 836  ALETFENPDRE-LCRVKRADYSKLDTDGLIKPGMRVLGGDVVVGKTIPLPEADLEKLTTG 894

Query: 894  --RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
              + T+RD SI+ R +E G+VD+V+LT N +  RF KV++R+++IP IGDKF SRHGQKG
Sbjct: 895  NTKITKRDASITSRTTEKGVVDKVMLTMNNND-RFTKVKIRTIKIPNIGDKFCSRHGQKG 953

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T G+ + QEDMP+  +GI PD+I+NPHAIPSRMT+  LIE + GKVA + G E  ATPF 
Sbjct: 954  TNGIQFRQEDMPFNRDGIVPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEVYATPFC 1013

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
             V VD+  KALH    Q  G E +YNGHTG  L  +IF GPT+YQRLKH+  DKIH+R R
Sbjct: 1014 SVVVDDFGKALHALRSQRYGNECLYNGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPR 1073

Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
            GP+Q L RQP EGR+ +GGLRFGEMERDCM+++GAS +L+ERLF  SD Y VHVC  CG 
Sbjct: 1074 GPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGT 1133

Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I +A+ K N ++C+GC+N T I QV +PYACKLLFQELM+M I PR+ T
Sbjct: 1134 ICVADTKLNRYQCKGCENDTRISQVLMPYACKLLFQELMSMTILPRLGT 1182


>gi|56694328|gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra distachya]
          Length = 551

 Score = 1053 bits (2724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/554 (89%), Positives = 524/554 (94%), Gaps = 3/554 (0%)

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 591
            LALMVYITVGS+A PILEFLEEW TE+FEEISPAVIP ATK+FVNGCWVGIHR+P+ LV 
Sbjct: 1    LALMVYITVGSSANPILEFLEEWSTESFEEISPAVIPTATKVFVNGCWVGIHRNPDQLVN 60

Query: 592  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 651
            TLR+LRR+VDVN EVGVVRDI LKELR+YTDYGRCSRPLF+V+ QRLLI+K DII LQ+R
Sbjct: 61   TLRQLRRQVDVNPEVGVVRDIPLKELRLYTDYGRCSRPLFVVKNQRLLIRKPDIIRLQER 120

Query: 652  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 711
             S  D GWHDLVA+GFIEY+DTEEEETTMISMTINDLVQAR HPEEAY  TYTHCEIHPS
Sbjct: 121  TS-SDEGWHDLVARGFIEYVDTEEEETTMISMTINDLVQARRHPEEAYTTTYTHCEIHPS 179

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQ PLVTT
Sbjct: 180  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQXPLVTT 239

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM
Sbjct: 240  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 299

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 891
            G+LVKEDFGRP R NT GMRHGSYDKLD+DGLAPPGTRVSGEDVIIGKTTP++Q+E+ G 
Sbjct: 300  GSLVKEDFGRPSRENTAGMRHGSYDKLDEDGLAPPGTRVSGEDVIIGKTTPVTQEESMG- 358

Query: 892  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
              RYTRRD S S+RHSE+GMVDQVLLTTN DGLRFVK+R+RSVRIPQIGDKFSSRHGQKG
Sbjct: 359  -GRYTRRDQSTSMRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQKG 417

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            TVGMTYTQEDMPWT+EG++PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT
Sbjct: 418  TVGMTYTQEDMPWTIEGVSPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 477

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
            DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL AMIFLGPTYYQRLKHMVDDKIHSRGR
Sbjct: 478  DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGR 537

Query: 1072 GPVQILTRQPAEGR 1085
            GPVQILTRQPAEGR
Sbjct: 538  GPVQILTRQPAEGR 551


>gi|401426102|ref|XP_003877535.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
 gi|322493781|emb|CBZ29070.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1185

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1189 (45%), Positives = 769/1189 (64%), Gaps = 50/1189 (4%)

Query: 13   QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
            + + ED  +++  ED W VIS++F EKGLV QQLDS+++F+    + I  ES  +  R +
Sbjct: 23   EHDVEDPNDDLDSEDIWEVISSFFREKGLVHQQLDSYNDFLMRIPKMI--ESMAVIPRQD 80

Query: 73   SQHNPGQQSDFAETIYKISFGQIYLSKPM-MTES---DGETATLFPKAARLRNLTYSAPL 128
             Q++PG   +      ++    + +  P   T+S    G    LFP   RLR++TY A  
Sbjct: 81   DQYDPGVTMEEQRDQPRLVLQDVVIGNPSHQTQSYFAGGSLPPLFPNECRLRDMTYDAQA 140

Query: 129  YVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
             V +    ++  H   +         V +G++PIML+S  C L    E +L  L ECP+D
Sbjct: 141  QVTLG---VELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHD 197

Query: 189  QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
            QGGYF+ING+EKVLIAQE+ + NHVY F +++      + EV+S+ E     P T+ + M
Sbjct: 198  QGGYFVINGTEKVLIAQERQAANHVYTFSRQK----GLLCEVKSIVEGSLNKPRTLQIIM 253

Query: 249  LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
              +    G S  + +   +  +   IP+ ++FRA+  VADK+IL+ +  D +DT M+ELL
Sbjct: 254  QYKNKGPG-SGFENLMCRVAQMDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELL 312

Query: 309  RPSLEEAFVIQ--NQQVALDYIGKR----GATVGVTRDKRIKYAKEILQKEMLPHVGTGD 362
            R S+ +A  +Q   ++ AL YIG+R     A   + R+     A+ +L +++LPH+GT  
Sbjct: 313  RGSMSDASTLQIFTREEALGYIGRRLGKQDAMANLQRE-----AESLLMRDLLPHMGTDP 367

Query: 363  FCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV 422
                 K  Y GY++H+LLL ALGR  E DRD  G+KR+D+AG LL    +    ++ +++
Sbjct: 368  SANRTKCLYMGYMVHKLLLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEM 427

Query: 423  RAYVQKCVDNGKDV-NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 481
               +Q    N + V +    I +K IT GL+  LATGN+G       + GV+Q LNRLTY
Sbjct: 428  IKTLQDHAANPRGVFSFGRVIHSKLITDGLRRCLATGNFGDLKTGNIKTGVAQTLNRLTY 487

Query: 482  ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
            +S+LS+LRR+ +PI    K  +PR LH +QWG +CP ETPEG + GL+KN+ALM  ++ G
Sbjct: 488  SSSLSNLRRIQNPIAASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRG 547

Query: 542  SAAYPILEFLEE----WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLR 597
            +    +++ ++     + T   E+ +     +  ++FVNG  +G+ R+PE L+  LR  R
Sbjct: 548  TDHAEVVQAVQARIDGFRTIGLEDTADV---RVARVFVNGTMIGVDRNPERLLHDLRTRR 604

Query: 598  RRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK---RDIIALQQRESP 654
            R  +++ EV +VRDIR +E+R+++D GRC RPLF+ E   L ++K   RD++  ++    
Sbjct: 605  RNGELSNEVSIVRDIRDREIRVFSDAGRCLRPLFVAENCHLKLRKSGMRDLLVSEKAGGK 664

Query: 655  EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLIL 714
            +   W   + KG++E ID EEE++ +I+MT +++       E+ Y   Y+HCE+ PS+IL
Sbjct: 665  KSISWSTALKKGYVELIDCEEEDSLLIAMTPSEV-------EKNYY--YSHCEMDPSMIL 715

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            G+CASIIP+P+HNQSPRNTYQSAMGKQAMGIY +N+  RMDT A+VL+YPQKPLV T+AM
Sbjct: 716  GICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAM 775

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
             ++H   LPAG NA+VAI+CYSGYNQEDS+IM++S+++RGFFRS F+RS++ +E++    
Sbjct: 776  TYMHSNDLPAGHNAVVAISCYSGYNQEDSIIMSRSAVERGFFRSAFWRSFKAKEERQKRD 835

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS- 893
              E F  PDR     ++   Y KLD DGL  PG RV G DV++GKT P+ + + +   + 
Sbjct: 836  ALETFENPDRE-VCRVKRADYSKLDTDGLIKPGMRVLGGDVVVGKTIPLPEADLEKLTTG 894

Query: 894  --RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
              + T+RD SI+ R +E G+VD+V+LT N +  RF KV++R+++IP IGDKF SRHGQKG
Sbjct: 895  NTKITKRDASITSRATEKGVVDKVMLTMNNND-RFTKVKIRTIKIPNIGDKFCSRHGQKG 953

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T G+ + QEDMP+  +GI PD+I+NPHAIPSRMT+  LIE + GKVA + G E  ATPF 
Sbjct: 954  TNGIQFRQEDMPFNRDGIVPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEVYATPFC 1013

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
             V VD+  KALH    Q  G E +YNGHTG  L  +IF GPT+YQRLKH+  DKIH+R R
Sbjct: 1014 SVVVDDFGKALHALRSQRYGNECLYNGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPR 1073

Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
            GP+Q L RQP EGR+ +GGLRFGEMERDCM+++GAS +L+ERLF  SD Y VHVC  CG 
Sbjct: 1074 GPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGT 1133

Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            I +A+ K N ++C+GC+N T I QV +PYACKLLFQELM+M I PR+ T
Sbjct: 1134 ICVADTKLNRYQCKGCENDTRISQVLMPYACKLLFQELMSMTILPRLGT 1182


>gi|45545319|gb|AAS67507.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Coccodinium bartschii]
          Length = 940

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/940 (55%), Positives = 661/940 (70%), Gaps = 44/940 (4%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VF+K     + ++AE+RS+ +  +R  S   V++  R     G
Sbjct: 1    SEKVLIAQERSAGNIVQVFQKVALAPFTHLAEIRSVIDKGSRMMSQCTVKLFRRAEGPDG 60

Query: 258  SSGQY-IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
            +  +  IR  LPY++ +IP++IVFRAL  V+D DILE IC+D  D +MM++L  SL+E  
Sbjct: 61   TKIENPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQEGQ 120

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
             IQ+ ++A D+I +RG   G+    R K A +IL KE LPH+G       KKA++ GY++
Sbjct: 121  PIQSAELARDFIARRGNQSGLKAGDRQKQALDILVKEFLPHIGQTPDAAAKKAFFLGYMV 180

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
             R+L CALGR   DDRDH G KRLDL+GPL+  LFRM     T+D   Y+++ ++ G   
Sbjct: 181  QRMLKCALGRTEPDDRDHLGKKRLDLSGPLMANLFRMKLDTATKDFFNYMKRRIEAGAGF 240

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            +++   K   IT+GLKYSLATGNWG Q      +AGVSQVL+R T+ASTLSHLRR N+PI
Sbjct: 241  SIKAGFKPGIITNGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPI 300

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GREGK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL+LM  +T      P++ ++ E  
Sbjct: 301  GREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMTMVTPSRDTTPLMTYILEKN 360

Query: 556  TENFEEISPAVIPQATKIFVNGCWVG-IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
             E  EE  P + PQATK+F NG W   I RDP+ LV   R LRR+  +  ++ +V DIR 
Sbjct: 361  VEALEEWEPRLNPQATKVFANGVWFAVILRDPKFLVDHFRSLRRKGTIEPDISLVWDIRE 420

Query: 615  KELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDIIALQQ----RESPE-------- 655
            KE +I  D GR  RPLF+V+  +       L + K  I+ LQ+    +E+P+        
Sbjct: 421  KEFKISGDIGRIIRPLFVVDTDKASPTHGHLKLTKEHILRLQESKAYKENPDQAPAGWSM 480

Query: 656  --DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-------LHPEE--------- 697
              D  W  LV +G +E++D EEEE  MI MT   L  AR       + P+E         
Sbjct: 481  ANDYNWFALVNEGVVEFLDAEEEEQAMIIMTPEALSDARARAEGYLIEPDEDPLRRNDVP 540

Query: 698  --AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
               ++ T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RM+
Sbjct: 541  LAPHSKTFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRME 600

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL  T+AME L FR+LPAG NAIVAI+CYSGYNQEDSVIMNQSSIDRG 
Sbjct: 601  TMANILYYPQKPLARTQAMEFLKFRELPAGQNAIVAISCYSGYNQEDSVIMNQSSIDRGL 660

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLF+R Y+D+EK +G  V E F +P R +T+ MR G+YDK+DDDG+  PG RV GED+
Sbjct: 661  FRSLFYRVYQDQEKLIGQSVLEQFEKPTRGDTLRMRQGTYDKIDDDGIVAPGVRVRGEDI 720

Query: 876  IIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            I+GKT P++ D E  GQ  + + +RD S+ LR +E G+VDQV+LT NAD  +FVKVRVR+
Sbjct: 721  IMGKTAPMAPDAEELGQRQKQHVKRDASVPLRSTEAGVVDQVMLTQNADMQKFVKVRVRT 780

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ PD+I+NPHAIPSRMTI  LIEC+
Sbjct: 781  TKVPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGVVPDLIINPHAIPSRMTIAHLIECL 840

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1053
            + KVA   G EGDATPFT VTV  +S  L + GYQ RGFE MYNGHTGR++ A +FLGPT
Sbjct: 841  LSKVATLRGDEGDATPFTKVTVTQVSSLLRRMGYQSRGFEVMYNGHTGRKMVAQVFLGPT 900

Query: 1054 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            YYQRL+HMVDDKIHSR RGP QILTRQP EGR+RDGGLRF
Sbjct: 901  YYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 940


>gi|146094444|ref|XP_001467277.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            infantum JPCM5]
 gi|398019887|ref|XP_003863107.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
            donovani]
 gi|134071642|emb|CAM70332.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            infantum JPCM5]
 gi|322501339|emb|CBZ36417.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
            donovani]
          Length = 1181

 Score = 1051 bits (2717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/1187 (44%), Positives = 768/1187 (64%), Gaps = 50/1187 (4%)

Query: 15   EEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 74
            ++E+  +++  ED W VIS++F EKGLV QQLDS+++F+    + I  ES  +  R + Q
Sbjct: 21   DDENPNDDLDSEDIWEVISSFFREKGLVHQQLDSYNDFLMRIPKMI--ESMAVIPRQDDQ 78

Query: 75   HNPGQQSDFAETIYKISFGQIYLSKPMMTE----SDGETATLFPKAARLRNLTYSAPLYV 130
            ++PG   +      ++    + +  P        + G    LFP   RLR++TY A   V
Sbjct: 79   YDPGVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQAQV 138

Query: 131  DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQG 190
             +    ++  H   +         V +G++PIML+S  C L    E +L  L ECP+DQG
Sbjct: 139  TLG---VELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQG 195

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 250
            GYF+ING+EKVLIAQE+ + NHVY F +++      + EV+S+ E     P T+ + M  
Sbjct: 196  GYFVINGTEKVLIAQERQAANHVYTFSRQK----GLLCEVKSIVEGSLNKPRTLQIIMQY 251

Query: 251  RTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRP 310
            +    G S  + +   +  +   IP+ ++FRA+  VADK+IL+ +  D +DT M+ELLR 
Sbjct: 252  KNKGPG-SGFENLMCRVAQMDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRG 310

Query: 311  SLEEAFVIQ--NQQVALDYIGKR----GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            S+ +A  +Q   ++ AL YIG+R     A   + R+     A+ +L +++LPH+GT    
Sbjct: 311  SMSDASTLQIFTREEALGYIGRRLGKQDAMANLQRE-----AESLLMRDLLPHMGTDPSA 365

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
               K  Y GY++H+LLL ALGR  E DRD  G+KR+D+AG LL    +    ++ +++  
Sbjct: 366  NRTKCLYMGYMVHKLLLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIK 425

Query: 425  YVQKCVDNGKDV-NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 483
             +Q    N + V +    I +K IT GL+  LATGN+G       + GV+Q LNRLTY+S
Sbjct: 426  TLQDHAANPRGVFSFGRVIHSKLITDGLRRCLATGNFGDLKTGNIKTGVAQTLNRLTYSS 485

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            +LS+LRR+ +PI    K  +PR LH +QWG +CP ETPEG + GL+KN+ALM  ++ G+ 
Sbjct: 486  SLSNLRRIQNPIAASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTD 545

Query: 544  AYPILEFLEE----WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRR 599
               +++ ++     + T   E+ +     +  ++FVNG  +G+ R+PE L+  LR  RR 
Sbjct: 546  HAEVVQAVQARIDGFRTIGLEDTADV---RVARVFVNGTMIGVDRNPERLLHDLRTRRRN 602

Query: 600  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK---RDIIALQQRESPED 656
             +++ EV +VRDIR +E+R+++D GRC RPLF+ E   L ++K   R+++  ++    + 
Sbjct: 603  GELSNEVSIVRDIRDREIRVFSDAGRCLRPLFVAENCHLKLRKSGMRNLLVSEKAGGKKS 662

Query: 657  GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
              W+  + KG++E ID EEE++ +I+MT N++       E+ Y   Y+HCE+ PS+ILG+
Sbjct: 663  ISWNTALKKGYVELIDCEEEDSLLIAMTPNEV-------EKNYY--YSHCEMDPSMILGI 713

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIP+P+HNQSPRNTYQSAMGKQAMGIY +N+  RMDT A+VL+YPQKPLV T+AM +
Sbjct: 714  CASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAMTY 773

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            +H   LPAG NA+VAI+CYSGYNQEDS+IM++S+++RGFFRS F+RS++ +E++      
Sbjct: 774  MHSNDLPAGHNAVVAISCYSGYNQEDSIIMSRSAVERGFFRSAFWRSFKAKEERQKRDAL 833

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS--- 893
            E F  PDR     ++   Y KLD DGL  PG RV G DV++GKT P+ + + +   +   
Sbjct: 834  ETFENPDRE-LCRVKRADYSKLDTDGLIKPGMRVLGGDVVVGKTIPLPEADLEKLTTGNT 892

Query: 894  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
            + T+RD SI+ R +E G+VD+V+LT N +  RF KV++R+++IP IGDKF SRHGQKGT 
Sbjct: 893  KITKRDASITSRTTEKGVVDKVMLTMNNND-RFTKVKIRTIKIPNIGDKFCSRHGQKGTN 951

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            G+ + QEDMP+  +GI PD+I+NPHAIPSRMT+  LIE + GKVA + G E  ATPF  V
Sbjct: 952  GIQFRQEDMPFNRDGIVPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEVYATPFCSV 1011

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
             VD+  KALH    Q  G E +YNGHTG  L  +IF GPT+YQRLKH+  DKIH+R RGP
Sbjct: 1012 VVDDFGKALHALRSQRYGNECLYNGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPRGP 1071

Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
            +Q L RQP EGR+ +GGLRFGEMERDCM+++GAS +L+ERLF  SD Y VHVC  CG I 
Sbjct: 1072 LQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTIC 1131

Query: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            +A+ K N ++C+GC+N T I QV +PYACKLLFQELM+M I PR+ T
Sbjct: 1132 VADTKLNRYQCKGCENDTRISQVLMPYACKLLFQELMSMTILPRLGT 1178


>gi|56694348|gb|AAW22914.1| RNA polymerase II second largest subunit [Cunninghamia lanceolata]
          Length = 550

 Score = 1050 bits (2714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/553 (89%), Positives = 526/553 (95%), Gaps = 3/553 (0%)

Query: 533  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 592
            ALMVYITVGS+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+T
Sbjct: 1    ALMVYITVGSSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVRT 60

Query: 593  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 652
            LR+LRR+VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL I+K DI  LQ   
Sbjct: 61   LRQLRRQVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIRKVDINNLQ--A 118

Query: 653  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 712
            S EDG WH+LV +G IEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSL
Sbjct: 119  SREDG-WHELVTQGCIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSL 177

Query: 713  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 772
            ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTR
Sbjct: 178  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTR 237

Query: 773  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 832
            AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MG
Sbjct: 238  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMG 297

Query: 833  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 892
            TLVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++ GQ 
Sbjct: 298  TLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSGGQV 357

Query: 893  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
            S+YT+RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGT
Sbjct: 358  SKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGT 417

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD
Sbjct: 418  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 477

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 1072
            VTVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRG
Sbjct: 478  VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRG 537

Query: 1073 PVQILTRQPAEGR 1085
            PVQILTRQPAEGR
Sbjct: 538  PVQILTRQPAEGR 550


>gi|347309788|gb|AEO79204.1| DNA-directed RNA polymerase II subunit, partial [Hymenolepis
           microstoma]
          Length = 793

 Score = 1048 bits (2710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/800 (65%), Positives = 635/800 (79%), Gaps = 14/800 (1%)

Query: 200 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR---TSAKG 256
           KVLIAQEKM+TN VYVF+++  +KYAY  E+RS  E  +RP ST++V M++R    S K 
Sbjct: 1   KVLIAQEKMATNTVYVFQQKD-SKYAYKTEIRSCLEHSSRPASTLWVNMMARGGKDSNKR 59

Query: 257 GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
            + GQ I A LPYI+ EIP++IVFRALGFVAD+DILEHI YDF D +M E+++PSL+EAF
Sbjct: 60  ATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDNEMREMIKPSLDEAF 119

Query: 317 VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            IQ+Q+VAL++IG RGA  GVT++KRIKYA+EILQKE LPH+G  DFC+T+KAY+ GY++
Sbjct: 120 CIQDQKVALNFIGSRGARPGVTKEKRIKYAREILQKETLPHIGISDFCDTRKAYFLGYMV 179

Query: 377 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
           HRLLL AL RR  DDRDHYGNKRLDLAGPLL  LFR LFR LT+++R Y QK VD GKD 
Sbjct: 180 HRLLLTALRRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFVDKGKDF 239

Query: 437 NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            L+ AI++  IT GLKYSLATGNWG Q  A   R GVSQVLNRLT+ASTLSHLRRLNSPI
Sbjct: 240 GLESAIRSGIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNSPI 299

Query: 496 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
           GR+GKLA+PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS   PILEFLEEW 
Sbjct: 300 GRDGKLARPRQLHNTLWGMICPAETPEGSAVGLVKNLALMAYISVGSQPSPILEFLEEWS 359

Query: 556 TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV-NTEVGVVRDIRL 614
            EN EE++P+ I ++ KIFVNGCWVGIH  P+ L+ TLR+LRR+VDV  +EV +VRD R 
Sbjct: 360 MENLEEVAPSAIGKSCKIFVNGCWVGIHNSPDNLMVTLRKLRRQVDVIVSEVSMVRDYRD 419

Query: 615 KELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTE 674
           +E+RIYTD GR  RPL IVEK  L++KK+ I  L         GW +LV  G +EYIDT 
Sbjct: 420 QEIRIYTDAGRICRPLIIVEKGNLMLKKKHIKYLTDTHLSR-FGWQELVLSGVVEYIDTM 478

Query: 675 EEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
           EEETTMI+M  +++ QA +H    Y  T+THCEIHPS+ILG+CASIIPF DHNQSPRNTY
Sbjct: 479 EEETTMIAMGPSEM-QAAVH----YCKTHTHCEIHPSMILGICASIIPFCDHNQSPRNTY 533

Query: 735 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
           QSAMGKQAMG+Y+TN+  RMDTL+ VLYYPQKPLVTTR+ME+L FR+LPAGINAIVAIAC
Sbjct: 534 QSAMGKQAMGVYITNFHTRMDTLSNVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAIAC 593

Query: 795 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
           Y+GYNQEDS+I+N+S+I RGFFRS F+R+Y+D+E K G+   E F +P+ +   G++   
Sbjct: 594 YTGYNQEDSLIVNESAIQRGFFRSEFYRTYKDQEGKYGSRQTERFEKPNPNECAGIKRAV 653

Query: 855 YDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMV 912
           YDKLD+DGL PPG RVSG+DV+IGKT  I    DE Q    R+T+RD S+ +R SE G+V
Sbjct: 654 YDKLDEDGLIPPGMRVSGDDVLIGKTLEILDQDDETQVGDKRFTKRDASVFMRRSEYGIV 713

Query: 913 DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
           DQV+LT N +G  F KVRVR+ + PQ+GDKF+SRHGQKGT G+ Y QEDMP+T EGITPD
Sbjct: 714 DQVMLTYNNEGNLFCKVRVRTTKTPQVGDKFASRHGQKGTCGILYRQEDMPFTCEGITPD 773

Query: 973 IIVNPHAIPSRMTIGQLIEC 992
           +I+NPHAIPSRMTIG LIEC
Sbjct: 774 VIINPHAIPSRMTIGHLIEC 793


>gi|46277255|gb|AAS86818.1| RNA polymerase II second largest subunit, partial [Gnetum gnemon]
          Length = 546

 Score = 1046 bits (2705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/549 (89%), Positives = 523/549 (95%), Gaps = 3/549 (0%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGS+A PILEFLEEWGTENFEE+SP+ IP ATKIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSSANPILEFLEEWGTENFEEVSPSNIPNATKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHR PE LVKTL++LRR+VDVN EVGVVRDI L+ELR+YTDYGRCSRPLF+VEKQ+L
Sbjct: 61   WVGIHRYPETLVKTLKQLRRQVDVNPEVGVVRDIPLRELRLYTDYGRCSRPLFVVEKQQL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK DII LQ+R SPE+G WHDLVAKGFIEY+DTEEEETTMISMTI DLVQ+R +P+EA
Sbjct: 121  LIKKADIIRLQERVSPEEG-WHDLVAKGFIEYVDTEEEETTMISMTITDLVQSRKNPKEA 179

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 180  YSNTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 239

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 240  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 299

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYRDEEK+MGTL+KE+FGRP R NT GMRHGSYDKLDDDGLAPPGTRVSGED+IIG
Sbjct: 300  LFFRSYRDEEKRMGTLIKEEFGRPSRDNTSGMRHGSYDKLDDDGLAPPGTRVSGEDIIIG 359

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KTTPI+QDE  G   ++TRRD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQ
Sbjct: 360  KTTPINQDENAG--GKFTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQ 417

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGTVGMTY QEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 418  IGDKFSSRHGQKGTVGMTYCQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 477

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRL
Sbjct: 478  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRL 537

Query: 1059 KHMVDDKIH 1067
            KHMVDDKIH
Sbjct: 538  KHMVDDKIH 546


>gi|56694356|gb|AAW22918.1| RNA polymerase II second largest subunit [Sequoiadendron giganteum]
          Length = 549

 Score = 1046 bits (2704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/552 (89%), Positives = 525/552 (95%), Gaps = 3/552 (0%)

Query: 534  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593
            LMVYITVGS+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+TL
Sbjct: 1    LMVYITVGSSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVRTL 60

Query: 594  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 653
            R+LRR+VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL I+K+DI  LQ   S
Sbjct: 61   RQLRRQVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIRKQDINNLQ--AS 118

Query: 654  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 713
             EDG WH+L+ +G IEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSLI
Sbjct: 119  REDG-WHELITQGCIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLI 177

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRA
Sbjct: 178  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 237

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            MEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+ GT
Sbjct: 238  MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRAGT 297

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 893
            LVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++ GQ S
Sbjct: 298  LVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSAGQVS 357

Query: 894  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
            +YT+RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTV
Sbjct: 358  KYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 417

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV
Sbjct: 418  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 477

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGP
Sbjct: 478  TVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 537

Query: 1074 VQILTRQPAEGR 1085
            VQILTRQPAEGR
Sbjct: 538  VQILTRQPAEGR 549


>gi|83415467|gb|ABC17941.1| RNA polymerase II second largest subunit, partial [Endogone
            pisiformis]
          Length = 720

 Score = 1046 bits (2704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/721 (69%), Positives = 583/721 (80%), Gaps = 27/721 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KR+DLAGPLL  LFRMLF+KLT+DV  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLAT
Sbjct: 2    KRMDLAGPLLASLFRMLFKKLTKDVSKYLQKCIESSREFNLTLAVKSNTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A  ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKAMQSKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YI+VGSAA PI+EFL EW  EN EE+S + IP ATKIFVN
Sbjct: 122  PAETPEGQACGLVKNLALMSYISVGSAAAPIIEFLGEWTMENLEELSASNIPDATKIFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVGIHRDP  LV+TL+ LRR VD++ EV VVRDIR KELR+YTD GRC RPLFIVEKQ
Sbjct: 182  GVWVGIHRDPAELVRTLKELRRCVDISPEVSVVRDIREKELRLYTDAGRCCRPLFIVEKQ 241

Query: 637  RLLIKKRDIIALQQRESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LLIKK  I  L   ES ED     GW DLV+ G +EYID EEEET MI MT  DL ++R
Sbjct: 242  KLLIKKDHITKLA--ESREDDTQSYGWQDLVSGGLVEYIDAEEEETAMICMTPEDLSESR 299

Query: 693  ------LHPEE------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
                    P+E             YA T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 300  EMAETGFAPKERDVASRVKSQNSGYAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 359

Query: 735  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
            QSA       IY+TNYQ RMDTLA +LYYPQKPLVTTR+ME+L FR+LPAG NAIVAI C
Sbjct: 360  QSAXXXXXXXIYLTNYQVRMDTLANILYYPQKPLVTTRSMEYLRFRELPAGQNAIVAILC 419

Query: 795  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
            YSGYNQEDSVIMNQSSIDRG FRSLFFRSY D EKK+G +V E+F +P R  T+ ++HG+
Sbjct: 420  YSGYNQEDSVIMNQSSIDRGLFRSLFFRSYMDAEKKVGMMVMEEFEKPTRDTTLRLKHGT 479

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHSETGMV 912
            Y+KL++DGL  PGTRVSGED+IIGKT PI  D E  GQ    +++RD S  LR +ETG+V
Sbjct: 480  YEKLEEDGLIAPGTRVSGEDIIIGKTAPIPPDSEELGQRTGTHSKRDASTPLRSTETGIV 539

Query: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            DQV++TTN +GL+FVKVRVRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP++ EG+TPD
Sbjct: 540  DQVMVTTNQEGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYRQEDMPFSAEGVTPD 599

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032
            +I+NPHAIPSRMTIG L+EC++GKV+   G EGDATPFTDVTV+ IS+AL    YQ RGF
Sbjct: 600  LIINPHAIPSRMTIGHLVECLLGKVSTLTGNEGDATPFTDVTVEAISQALKAQNYQQRGF 659

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGP+QILTRQP EGRSRDGGLR
Sbjct: 660  EVMYNGHTGRKLAAQVYLGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLR 719

Query: 1093 F 1093
            F
Sbjct: 720  F 720


>gi|68131884|gb|AAY85220.1| RNA polymerase II second largest subunit [Berberis nervosa]
          Length = 540

 Score = 1045 bits (2702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/541 (91%), Positives = 518/541 (95%), Gaps = 2/541 (0%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISP+VIP A KIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPSVIPTAHKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHR+PE+LVKTLR+LRR+VDVNTEVG++RD  LKELR+YTDYGRCSRPLFIVE QRL
Sbjct: 61   WVGIHRNPELLVKTLRQLRRQVDVNTEVGIIRDFSLKELRLYTDYGRCSRPLFIVENQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK+DI ALQQRES ++GGWHDLVAKG+IEY+DTEEEETTMISMTI+DLV AR +P E 
Sbjct: 121  LIKKKDIRALQQRESLDEGGWHDLVAKGYIEYVDTEEEETTMISMTIDDLVNARTNPNET 180

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y   YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 181  Y-QLYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 239

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 240  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 299

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 300  LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 359

Query: 879  KTTPISQDEAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            KTTPI+ DE QG  AS+YT+RDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIP
Sbjct: 360  KTTPIAPDETQGGVASQYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIP 419

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKV
Sbjct: 420  QIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 479

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+LTAMIFLGPTYYQR
Sbjct: 480  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQR 539

Query: 1058 L 1058
            L
Sbjct: 540  L 540


>gi|56694300|gb|AAW22890.1| RNA polymerase II second largest subunit [Anemia phyllitidis]
          Length = 549

 Score = 1039 bits (2687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/550 (88%), Positives = 521/550 (94%), Gaps = 1/550 (0%)

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQA GLVKNLALM YITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVN
Sbjct: 1    PAETPEGQAWGLVKNLALMAYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVN 60

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            GCWVGIHR+P++LVKTLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVEKQ
Sbjct: 61   GCWVGIHREPDLLVKTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQ 120

Query: 637  RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE 696
            RLLIKK DI ALQ +++ E  GWHDLV KGFIEY+DTEEEETTMISMTI+DLV +R HPE
Sbjct: 121  RLLIKKSDIRALQSKDTAE-VGWHDLVTKGFIEYVDTEEEETTMISMTISDLVNSRNHPE 179

Query: 697  EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 756
            EAY+DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDT
Sbjct: 180  EAYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDT 239

Query: 757  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 816
            LAYVLYYPQKPLVTTRAMEHLHFR LPAGINA+VAIACYSGYNQEDSVIMNQSS+DRGFF
Sbjct: 240  LAYVLYYPQKPLVTTRAMEHLHFRHLPAGINAVVAIACYSGYNQEDSVIMNQSSVDRGFF 299

Query: 817  RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 876
            RS+F+RSYRDEEKK GTLVKE+F RP+R  T+GMRHGSY+KLDDDGLAPPGTRVSGEDVI
Sbjct: 300  RSIFYRSYRDEEKKQGTLVKEEFERPNREATLGMRHGSYEKLDDDGLAPPGTRVSGEDVI 359

Query: 877  IGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRI 936
            IGKTTP+ QD+   QA RY++RD S  LRHSE+GM+DQVLLTTN++GLRFVK+RVRS+RI
Sbjct: 360  IGKTTPLPQDDTGSQAQRYSKRDQSTCLRHSESGMIDQVLLTTNSEGLRFVKIRVRSIRI 419

Query: 937  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK 996
            PQIGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGK
Sbjct: 420  PQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGK 479

Query: 997  VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            VAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRGFETMYNGH+GRRL+AMIFLGPTYYQ
Sbjct: 480  VAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRGFETMYNGHSGRRLSAMIFLGPTYYQ 539

Query: 1057 RLKHMVDDKI 1066
            R KHMVDDKI
Sbjct: 540  RPKHMVDDKI 549


>gi|83415489|gb|ABC17952.1| RNA polymerase II second largest subunit, partial [Umbelopsis
            ramanniana]
          Length = 717

 Score = 1037 bits (2682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/718 (67%), Positives = 580/718 (80%), Gaps = 24/718 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KR+DLAGPL+  LFRMLF+KLT+DV  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLAT
Sbjct: 2    KRMDLAGPLMASLFRMLFKKLTKDVAKYLQKCIESSREFNLTLAVKSSTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A  ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ W M+C
Sbjct: 62   GNWGDQKKAMQSKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWDMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YI+VGSAA P++ FLEEW  EN EE+S + IP ATKIFVN
Sbjct: 122  PAETPEGQACGLVKNLALMSYISVGSAAAPLILFLEEWAMENLEELSASNIPDATKIFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVGIHRDP  L+ +L+++RR VD++ EV +VRDIR KELR+YTD GRC RPLFIVE Q
Sbjct: 182  GVWVGIHRDPGELITSLKQMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFIVEDQ 241

Query: 637  RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE 696
            +L + K  +  LQ  +S  +  W DL++ G IEYID EEEET MI MT  DL ++R   E
Sbjct: 242  QLKLTKDHVALLQDPDS--NYRWQDLISDGIIEYIDAEEEETAMICMTPEDLAESRYSAE 299

Query: 697  -------------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
                                 Y+ T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 300  YGKPLQSDRDVASRLKTQQSGYSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 359

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TNYQ RMDTLA +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSG
Sbjct: 360  MGKQAMGVYLTNYQVRMDTLANILYYPQKPLTTTRSMEFLRFRELPAGQNAIVAILCYSG 419

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMNQSSIDRG FRSLF R+Y D EKK G +  E+F +P R NT+ ++HG+Y+K
Sbjct: 420  YNQEDSVIMNQSSIDRGLFRSLFLRTYMDAEKKAGMMFMEEFEKPTRDNTLRLKHGTYEK 479

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQV 915
            L++DGL  PGTRVSG+D+IIGKT PI  D E  GQ ++ + +RD S  LR +ETG+VDQV
Sbjct: 480  LEEDGLIAPGTRVSGDDIIIGKTAPIPADSEELGQRTKGHNKRDASTPLRSTETGIVDQV 539

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            ++TTN DGL+FVKVRVRS R+PQ+GDKF+SRHGQKGT+G+TY  ED+P++ EG+TPDII+
Sbjct: 540  MVTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYRHEDLPFSGEGVTPDIII 599

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035
            NPHAIPSRMTIG L+EC++GKV    G EGDATPFTDVTV+ +S+AL + GYQ RGFE M
Sbjct: 600  NPHAIPSRMTIGHLVECLLGKVPTLTGNEGDATPFTDVTVEAVSQALAEQGYQQRGFEVM 659

Query: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            YNGHTGR+L A +FLGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 660  YNGHTGRKLAAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 717


>gi|83415483|gb|ABC17949.1| RNA polymerase II second largest subunit, partial [Mortierella
            verticillata]
          Length = 721

 Score = 1037 bits (2682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/720 (68%), Positives = 583/720 (80%), Gaps = 24/720 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KR+DLAGPLLGGLF+MLF KLT+DV  Y++KC+D+ KD  L  A+K+ TIT+GLKYSLAT
Sbjct: 2    KRMDLAGPLLGGLFKMLFTKLTKDVSKYLRKCIDSNKDFVLSVAVKSNTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A  +RAGVSQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+ WGM+C
Sbjct: 62   GNWGEQLKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKLAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + PI+EFLE WG EN EE++   I  ATK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSAISVGSPSAPIIEFLEGWGMENLEELTANNILDATKVFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W G+HRDP  LV TL+RLRR +D+N+EV +V+DIR KELR+YTD GRC RPLFIVE Q
Sbjct: 182  GVWAGVHRDPGSLVNTLKRLRRNMDINSEVSIVKDIREKELRMYTDAGRCLRPLFIVEDQ 241

Query: 637  RLLIKKRDIIALQQRESPEDG------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 690
             LL++K  I  L +    EDG      GW+DL++ G +E++D EEEET MI MT +DL +
Sbjct: 242  ALLLRKEHIDELTRAPYYEDGKAMEPWGWNDLLSNGIVEFVDAEEEETIMICMTPDDLAE 301

Query: 691  ARL-----HPEEAYA----------DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            +R       P++A             T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 302  SRQVDHVQQPKDAAQRVKGTSSTSLHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 361

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGIYVTNYQ RMDTLA +LYYPQKPL TTR+ME+L FR+LPAG NA+VAI CY
Sbjct: 362  SAMGKQAMGIYVTNYQVRMDTLANILYYPQKPLATTRSMEYLRFRELPAGQNAVVAILCY 421

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSSIDRG FRS++FR+Y D+EKK+G    E+F +P R + + +RHG+Y
Sbjct: 422  SGYNQEDSVIMNQSSIDRGLFRSVYFRTYMDQEKKIGMTTMEEFEKPTREHVLRLRHGTY 481

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMVD 913
            +KLDDDGL  PGTRVSG+D+IIGKT PI  D  + GQ    +++ D S  LR +ETG+VD
Sbjct: 482  EKLDDDGLIAPGTRVSGDDIIIGKTKPIPVDSTEMGQRTGSHSKLDASTPLRSTETGIVD 541

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QV+LTTN +G++FVKVRVRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI
Sbjct: 542  QVMLTTNHEGVKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYRQEDMPFTCEGITPDI 601

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            I+NPHAIPSRMTIG L+EC++ KV+   G EGDATPFTDVTV+ IS+AL K  YQ RGFE
Sbjct: 602  IINPHAIPSRMTIGHLVECLLSKVSTLEGSEGDATPFTDVTVEAISEALKKHNYQQRGFE 661

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
             MYNGHTGR+L A +FLGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 662  VMYNGHTGRKLAAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 721


>gi|56694364|gb|AAW22922.1| RNA polymerase II second largest subunit [Amborella trichopoda]
          Length = 516

 Score = 1036 bits (2678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/516 (94%), Positives = 506/516 (98%), Gaps = 1/516 (0%)

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LVKTLR+LRR+VDVNTE
Sbjct: 2    PILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTE 61

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAK 665
            VGV+RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK DI ALQQRESP D GWHDLVAK
Sbjct: 62   VGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQRESP-DEGWHDLVAK 120

Query: 666  GFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPD 725
            GFIEY+DTEEEETTMISMTI+DLV ARL+PEEAY++TYTHCEIHPSLILGVCASIIPFPD
Sbjct: 121  GFIEYVDTEEEETTMISMTISDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPD 180

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG
Sbjct: 181  HNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 240

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
            INAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R 
Sbjct: 241  INAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRE 300

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLR 905
            NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q+E QGQASRYTRRDHS SLR
Sbjct: 301  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITQEEMQGQASRYTRRDHSTSLR 360

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
            HSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT
Sbjct: 361  HSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 420

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
            VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC
Sbjct: 421  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 480

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 1061
            GYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHM
Sbjct: 481  GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHM 516


>gi|56694324|gb|AAW22902.1| RNA polymerase II second largest subunit [Zamia integrifolia]
          Length = 556

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/556 (89%), Positives = 516/556 (92%), Gaps = 10/556 (1%)

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            GMMCPAETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATK
Sbjct: 1    GMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPNATK 60

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            IFVNGCWVGIHRDP++LVKTLR+LRR+VDVNTEVGVVRDIRL ELR YT YGRCSRPLFI
Sbjct: 61   IFVNGCWVGIHRDPDLLVKTLRQLRRQVDVNTEVGVVRDIRLSELRXYTXYGRCSRPLFI 120

Query: 633  VEKQRLLIKKRDIIALQQRE-----SPEDG----GWHDLVAKGFIEYIDTEEEETTMISM 683
            VE Q LLIKK DI  LQQR      SP+D     GWH+LV KGFIEY+DTEEEETTMISM
Sbjct: 121  VENQXLLIKKSDIRRLQQRXQLPLPSPDDETSVRGWHELVTKGFIEYVDTEEEETTMISM 180

Query: 684  TINDLVQARLHPEEAYADT-YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742
            TINDLV AR  P  A +   YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 181  TINDLVNARKSPPNATSIVKYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 240

Query: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802
            MGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
Sbjct: 241  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 300

Query: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862
            SVIMNQSSIDRGFFRSLF+RSYRDEEK+MGTLVKE+FGRP+R NT GMRHGSYDKLDDDG
Sbjct: 301  SVIMNQSSIDRGFFRSLFYRSYRDEEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDG 360

Query: 863  LAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNAD 922
            LAPPGTRVSGEDVIIGKTTP++QDE+ GQA+RYT+RD S SLRHS +GMVDQVLLTTNAD
Sbjct: 361  LAPPGTRVSGEDVIIGKTTPVTQDESGGQAARYTKRDQSTSLRHSXSGMVDQVLLTTNAD 420

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            GLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTY QEDMPWTVEGITPDIIVNPHAIPS
Sbjct: 421  GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPS 480

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
Sbjct: 481  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 540

Query: 1043 RLTAMIFLGPTYYQRL 1058
            RL+AMIFLGPTYYQRL
Sbjct: 541  RLSAMIFLGPTYYQRL 556


>gi|71841601|gb|AAZ43091.1| RNA polymerase II second largest subunit [Gunnera chilensis]
          Length = 534

 Score = 1035 bits (2675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/534 (90%), Positives = 516/534 (96%)

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            ACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP++TKIFVNGCWVGIHR
Sbjct: 1    ACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPESTKIFVNGCWVGIHR 60

Query: 585  DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 644
            +PE+LVKTLR+LRR+VDVNTEVG++RDIRLKELR+YTDYGRCSRPLFIV+KQRLLIKK+D
Sbjct: 61   NPELLVKTLRQLRRQVDVNTEVGIIRDIRLKELRLYTDYGRCSRPLFIVDKQRLLIKKKD 120

Query: 645  IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 704
            I ALQQRE+P++ GWHDLV+KGFIEYIDTEEEETTMISMTI +L   R   +EA+   +T
Sbjct: 121  IRALQQRENPDEMGWHDLVSKGFIEYIDTEEEETTMISMTIQELANVRNVQQEAFYGLHT 180

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYP
Sbjct: 181  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 240

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPLVTTRAMEHLHFR+LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 241  QKPLVTTRAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 300

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
            RDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLD+DGLAPPGTRV+GEDVIIGKTTPI+
Sbjct: 301  RDEEKKMGTLVKEDFGRPNRDNTMGMRHGSYDKLDEDGLAPPGTRVAGEDVIIGKTTPIA 360

Query: 885  QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
            QD+ QGQASRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFS
Sbjct: 361  QDDTQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFS 420

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG+E
Sbjct: 421  SRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGQE 480

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            GDATPFT+VTVD+ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 481  GDATPFTEVTVDSISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 534


>gi|396941918|gb|AFN89676.1| RNA polymerase II, partial [Zygoascus hellenicus]
          Length = 779

 Score = 1035 bits (2675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/779 (62%), Positives = 608/779 (78%), Gaps = 37/779 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE F +Q+++VALDYIG+RG+ +G+ R+KRI+YA++ILQKE+LPH+   +  
Sbjct: 1    VEMLKPCIEEGFFVQDREVALDYIGRRGSAMGINREKRIRYARDILQKELLPHITQEEGY 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY++HR+LLCAL RR EDDRDH+G KRLDLAGPLL  LFRMLF+KLT+D+  
Sbjct: 61   ETRKAFFLGYMVHRMLLCALERRGEDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  KD  L  A+K+ TIT+GLKYSLATGNWG Q  A  TRAGVSQVLNR T++S
Sbjct: 121  YMQKCVETNKDFILTLAVKSSTITNGLKYSLATGNWGDQKKAMSTRAGVSQVLNRYTFSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+A+PRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS 
Sbjct: 181  TLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGSP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI+ FLEEWG E  E+  P   P AT++FVNG W+G+HRDP  LV T+R LRR+ D++
Sbjct: 241  SQPIIYFLEEWGMEPLEDYVPHASPNATRVFVNGVWIGVHRDPAHLVDTMRSLRRKGDIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIAL-QQRESPE 655
             EV ++RDIR KE RI+TD GR  RPLF+V+       K  L++KK  +  L Q  E   
Sbjct: 301  PEVSIIRDIREKEFRIFTDAGRIYRPLFLVDNDPESPNKGELVLKKEHVFKLLQSEEEGN 360

Query: 656  DG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL------------HPEEA 698
            DG     GW  LV+ G IEYID EEEET MI+MT  DL  +R              P+ A
Sbjct: 361  DGDAASFGWSSLVSNGVIEYIDGEEEETIMIAMTPEDLELSRQMQSGGAADIIEEEPDAA 420

Query: 699  ---------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 749
                     +A T+THCEIHPS+ILG+ ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN
Sbjct: 421  RRVKPAYNPHAHTWTHCEIHPSMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTN 480

Query: 750  YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 809
            Y  RMDT+A +LYYPQKPL TTR+ME   FR+LPAG NA+VAIACYSGYNQEDS+IMNQS
Sbjct: 481  YSVRMDTMANILYYPQKPLATTRSMEFFKFRELPAGQNAVVAIACYSGYNQEDSMIMNQS 540

Query: 810  SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 869
            SIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKLD+DGL  PG R
Sbjct: 541  SIDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHGTYDKLDEDGLIAPGIR 600

Query: 870  VSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFV 927
            VSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVLLTTN +GLRFV
Sbjct: 601  VSGEDIIIGKTAPIPPDTEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLRFV 660

Query: 928  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
            KVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPHAIPSRMT+ 
Sbjct: 661  KVRMRTTKVPQIGDKFASRHGQKGTIGVTYRTEDMPFTAEGVVPDLIINPHAIPSRMTVA 720

Query: 988  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
             LIEC++ KV+A  G EGDATPFTDVTVD +SK L + GYQ RGFE MYNGHTG++L A
Sbjct: 721  HLIECLLSKVSALSGFEGDATPFTDVTVDAVSKLLREHGYQSRGFEVMYNGHTGKKLMA 779


>gi|47156743|gb|AAT12268.1| RNA polymerase II second largest subunit [Diapensia lapponica]
          Length = 530

 Score = 1034 bits (2674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/530 (93%), Positives = 516/530 (97%), Gaps = 1/530 (0%)

Query: 524  QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 583
            QACGLVKNLALMVY+TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW GIH
Sbjct: 1    QACGLVKNLALMVYVTVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWAGIH 60

Query: 584  RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 643
            RDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ+LLIKK+
Sbjct: 61   RDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQQLLIKKK 120

Query: 644  DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 703
            DI ALQQRE+PE+GGWHDLVAKGFIEYIDTEEEETT+ISMTIN+LV  R HPE++    Y
Sbjct: 121  DIRALQQRETPEEGGWHDLVAKGFIEYIDTEEEETTLISMTINELVSNREHPEDSNFGIY 180

Query: 704  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY
Sbjct: 181  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 240

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPLVTTRAMEHLHFR+LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS
Sbjct: 241  PQKPLVTTRAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 300

Query: 824  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 883
            YRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI
Sbjct: 301  YRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 360

Query: 884  SQDEAQ-GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 942
            +QD++Q G   RYT+RDHS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK
Sbjct: 361  AQDDSQGGPGGRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 420

Query: 943  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
            FSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG
Sbjct: 421  FSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 480

Query: 1003 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1052
            KEGDATPFT+VTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGP
Sbjct: 481  KEGDATPFTEVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGP 530


>gi|396941924|gb|AFN89679.1| RNA polymerase II, partial [Candida santjacobensis]
          Length = 777

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/777 (62%), Positives = 609/777 (78%), Gaps = 36/777 (4%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EE F +Q+++VALDYIG+RG+ +G+ R+KRI+YA++ILQKE+LPH+   +  E
Sbjct: 1    EMLKPCIEEGFFVQDREVALDYIGRRGSAMGINREKRIRYARDILQKELLPHITQEEGFE 60

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            T+KA++ GY++HR+LLCAL RR  DDRDH+G KRLDLAGPLL  LFRMLF+K+T+D+  Y
Sbjct: 61   TRKAFFLGYMVHRMLLCALERREPDDRDHFGKKRLDLAGPLLANLFRMLFKKMTKDIYRY 120

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGVSQVLNR T++ST
Sbjct: 121  MQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSST 180

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GK+A+PRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS +
Sbjct: 181  LSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPS 240

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PI+ FLEEWG E  E+  P   P AT++FVNG W+G+HRDP  LV T+R LRR+ D++ 
Sbjct: 241  QPIIYFLEEWGMEPLEDYVPHASPNATRVFVNGVWIGVHRDPAHLVDTMRSLRRKGDISP 300

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRE----- 652
            EV ++RDIR KE RI+TD GR  RPLF+V+       K  L ++K  I  L  +E     
Sbjct: 301  EVSIIRDIREKEFRIFTDAGRVYRPLFLVDNDEESTRKGELKLRKEHIYELHNQEEADPE 360

Query: 653  SPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-------------LHP--- 695
            S +D  GWH LV+ G +EYID EEEET MI+MT  DL  +R             + P   
Sbjct: 361  SEQDSFGWHSLVSNGVVEYIDGEEEETVMIAMTPEDLELSRQMQSGVEMIEDDEIDPARR 420

Query: 696  -EEAY---ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
             + AY   A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY 
Sbjct: 421  VKPAYNPNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYS 480

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQSSI
Sbjct: 481  VRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSMIMNQSSI 540

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRG FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKLD+DGL  PG RVS
Sbjct: 541  DRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHGTYDKLDEDGLIAPGIRVS 600

Query: 872  GEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 929
            GED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVLLTTN +GLRFVKV
Sbjct: 601  GEDIIIGKTAPIPPDTEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLRFVKV 660

Query: 930  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 989
            R+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPHAIPSRMT+  L
Sbjct: 661  RMRTTKVPQIGDKFASRHGQKGTIGVTYKHEDMPFTAEGVVPDLIINPHAIPSRMTVAHL 720

Query: 990  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            IEC++ KV++  G EGDATPFTDVTVD ISK L + GY  R FE MYNGHTGR+L A
Sbjct: 721  IECLLSKVSSLSGLEGDATPFTDVTVDAISKLLREHGYHSRXFEVMYNGHTGRKLVA 777


>gi|396941961|gb|AFN89697.1| RNA polymerase II, partial [Candida caseinolytica]
          Length = 775

 Score = 1031 bits (2665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/775 (62%), Positives = 603/775 (77%), Gaps = 34/775 (4%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EEAFVIQ+++VALDYIG+RG+ +G+ RDKR++YA++I+QKE+LPH+   +  E
Sbjct: 1    EMLKPCIEEAFVIQDREVALDYIGRRGSALGINRDKRMRYARDIMQKELLPHITQEEGYE 60

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            T+KA++ GY+IHR+LLCALGR   DDRDH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y
Sbjct: 61   TRKAFFLGYMIHRMLLCALGRAEVDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRY 120

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGVSQVLNR T++ST
Sbjct: 121  MQKCVETNKDFNLMLAVKSTTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSST 180

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS +
Sbjct: 181  LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLICPAETPEGQACGLVKNLSLMSCISVGSPS 240

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PI+ FLEEWG E  E+  P   P +T++FVNG W+G HRDP  LV+T+R LRRR D++ 
Sbjct: 241  QPIVLFLEEWGMEPLEDYVPHASPNSTRVFVNGVWIGTHRDPAQLVETMRTLRRRGDISP 300

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG 657
            E  ++RDIR +E +I+TD GR  RPLFIV+       K  ++++K  +  L   E   D 
Sbjct: 301  EASIIRDIREREFKIFTDAGRVYRPLFIVDTDENSPTKGDIMLRKEHVQKLLNAEEEIDD 360

Query: 658  -----GWHDLVAKGFIEYIDTEEEETTMISMTINDL------------VQARLHPEE--- 697
                 GW  LV  G +EYID EEEET MI+MT  DL            ++  L P +   
Sbjct: 361  EGNPYGWSSLVRSGVVEYIDAEEEETIMIAMTPEDLQLSKQAQAGDAPIEEELDPSQRVR 420

Query: 698  ----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
                 +A T++HCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  R
Sbjct: 421  PAFNPHARTWSHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSTR 480

Query: 754  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
            MDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSV+MNQ SIDR
Sbjct: 481  MDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVVMNQGSIDR 540

Query: 814  GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
            G FRSLFFRSY D+E+++G  V E+F RP R   +G++HG+YDKLD DGL   G RVSGE
Sbjct: 541  GLFRSLFFRSYMDQERRIGMSVVEEFERPTRQTALGLKHGTYDKLDADGLISAGVRVSGE 600

Query: 874  DVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            D+IIGKTTPIS D E  GQ +++ T+RD S  LR +E+G+VDQVLLTTN +GL+FVKVR+
Sbjct: 601  DIIIGKTTPISPDSEELGQRTKFHTKRDASTPLRSTESGLVDQVLLTTNQEGLKFVKVRM 660

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PDII+NPHAIPSRMT+  LIE
Sbjct: 661  RTTKVPQIGDKFASRHGQKGTIGVTYRNEDMPFTAEGMVPDIIINPHAIPSRMTVAHLIE 720

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            C++ KV++  G EGDATPFTDVTVD +S  L + GYQ RGFE MYNGHTG++L A
Sbjct: 721  CLLSKVSSLSGLEGDATPFTDVTVDAVSTLLREHGYQSRGFEVMYNGHTGKKLMA 775


>gi|396941926|gb|AFN89680.1| RNA polymerase II, partial [Candida tepae]
          Length = 773

 Score = 1030 bits (2663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/771 (62%), Positives = 605/771 (78%), Gaps = 31/771 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE F IQ+++VALDYIG+RG+ +G++R+KRI+YA++ILQKE+LPH+   +  
Sbjct: 1    LEMLKPCIEEGFFIQDREVALDYIGRRGSAMGISREKRIRYARDILQKELLPHITQEEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY++HR+LLCAL RR +DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  
Sbjct: 61   ETRKAFFLGYMVHRMLLCALERREQDDRDHFGKKRLDLAGPLLANLFRLLFRKLTKDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  KD NL  A+K+ T+T+GLKYSLATGNWG Q  A  +RAGVSQVLNR T++S
Sbjct: 121  YMQKCVETNKDFNLTLAVKSNTLTNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSH RR N+PIGR+GK+A+PRQLHN+ WG +CPAETPEGQACGLVKNL+LM  I+VGS 
Sbjct: 181  TLSHXRRTNTPIGRDGKIARPRQLHNTHWGFVCPAETPEGQACGLVKNLSLMSCISVGSP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI+ FLEEWG E  E+  P     +T++FVNG W+G+HRDP  LV T+R LRR+ D++
Sbjct: 241  SQPIVYFLEEWGMEPLEDFVPHASTDSTRVFVNGVWIGVHRDPGHLVDTMRSLRRKGDIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPE- 655
             EV ++RDIR KE RI+TD GR  RPLF+V+       K  L ++K  I  L  +E  E 
Sbjct: 301  PEVSIIRDIREKEFRIFTDAGRVYRPLFVVDNDEESSRKGELKLRKEHIYELLTKEETEG 360

Query: 656  --DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR---------LHPEEA------ 698
                GW  L++ G +EYID EEEET MI+MT  DL  +R           P+ A      
Sbjct: 361  EDSAGWSSLISNGIVEYIDGEEEETVMIAMTPEDLELSRQMQSGVEIISEPDPAQRVKPS 420

Query: 699  ---YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
               +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMD
Sbjct: 421  YNPHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMD 480

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQSSIDRG 
Sbjct: 481  TMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSMIMNQSSIDRGL 540

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKLD+DGL  PG RVSGED+
Sbjct: 541  FRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHGTYDKLDEDGLIAPGIRVSGEDI 600

Query: 876  IIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            IIGKT PI  D E  GQ ++Y T+RD S  LR +E GMVDQVLLTTN +GLRFVKVR+R+
Sbjct: 601  IIGKTAPIPPDIEELGQRTKYHTKRDASTPLRSTENGMVDQVLLTTNQEGLRFVKVRMRT 660

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EGI PD+I+NPHAIPSRMT+  LIEC+
Sbjct: 661  TKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTVAHLIECL 720

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            + KV++  G EGDATPFTDVTVD ISK L K GY  RGFE MYNGHTG++L
Sbjct: 721  LSKVSSLSGLEGDATPFTDVTVDAISKLLRKHGYHSRGFEVMYNGHTGKKL 771


>gi|56694366|gb|AAW22923.1| RNA polymerase II second largest subunit [Trimenia moorei]
          Length = 531

 Score = 1030 bits (2662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/534 (91%), Positives = 511/534 (95%), Gaps = 3/534 (0%)

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNG
Sbjct: 1    AETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNG 60

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 637
            CWVGIHR+PE+LVKTLR+LRR+VDVNTEVGV+RDIRLKELR+YTDYGRCSRPLFIVEKQR
Sbjct: 61   CWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQR 120

Query: 638  LLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 697
            LLIKK+DI ALQ RES E+G WHDLVAKGFIEY+DTEEEETTMISMTI+DLV AR +PEE
Sbjct: 121  LLIKKKDIRALQLRESVEEG-WHDLVAKGFIEYVDTEEEETTMISMTISDLVSARHNPEE 179

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
            AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTL
Sbjct: 180  AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTL 239

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFR
Sbjct: 240  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII
Sbjct: 300  SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 359

Query: 878  GKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            GKTTPI+QDE  GQ SRYTRRDHS SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVR+P
Sbjct: 360  GKTTPIAQDE--GQPSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVP 417

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL        
Sbjct: 418  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLXXXXXXXX 477

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
             AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLG
Sbjct: 478  XAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLG 531


>gi|396941791|gb|AFN89613.1| RNA polymerase II, partial [Wickerhamomyces canadensis]
          Length = 780

 Score = 1029 bits (2660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/780 (62%), Positives = 606/780 (77%), Gaps = 38/780 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ+++VALDYIG+RG  +G+ R+KRI+YAK+IL KE LPH+   +  
Sbjct: 1    LEMLKPCVEEGFVIQDREVALDYIGRRGNALGIRREKRIQYAKDILTKEFLPHITQREGY 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+LF+KLTRD+  
Sbjct: 61   ESRKAFFLGYMVNRLLLCALERKGQDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+ V+   D NL+ A+KA TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQRSVETSTDFNLKLAVKATTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTT 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PIL FLEEWG E  E+  P   P+ATKIFVNG W GIHR P  LV++LR +RRR +++
Sbjct: 241  SDPILLFLEEWGMEQLEDFVPHESPEATKIFVNGVWHGIHRQPAKLVESLREIRRRGEIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDIIALQQRES---- 653
             E+ ++RDIR +ELR++TD GR  RPLF+V+       + L + K  I  L + E+    
Sbjct: 301  PEISIIRDIRERELRVFTDAGRVYRPLFVVKDNEETGAKELALDKTHIQKLAETEARQQE 360

Query: 654  -------------PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA--------- 691
                         PED  W  L++   +EYID EEEETT+I+M+  DL  A         
Sbjct: 361  LAEGEDEAYNEDKPEDFTWSSLLSSNVVEYIDAEEEETTLIAMSPEDLDSASYDADASNP 420

Query: 692  --RLHP-EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
              R+ P     A TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+T
Sbjct: 421  NQRIKPVYNKSAQTYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVYLT 480

Query: 749  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
            NY FRMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQ
Sbjct: 481  NYNFRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 540

Query: 809  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
            SSIDRG FRSLFFRSY D+EK++G  V E+F +P+RSNT+ ++HG+Y+KLDDDGL  PG 
Sbjct: 541  SSIDRGLFRSLFFRSYMDQEKRVGMSVVEEFEKPNRSNTLRLKHGTYEKLDDDGLIAPGV 600

Query: 869  RVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
            RVSGED+IIGKTTPI  D E  GQ + Y T+RD S  LR +E G+VDQVL+TTN +GL+F
Sbjct: 601  RVSGEDIIIGKTTPIPPDTEELGQRTVYHTKRDASTPLRSTENGIVDQVLITTNQEGLKF 660

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
            VKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+
Sbjct: 661  VKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRREDMPFTSEGIVPDLIINPHAIPSRMTV 720

Query: 987  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
              LIEC++ KV+A  G EGDA+PFTDVTVD IS  L    YQ RGFE MYNGHTG++L A
Sbjct: 721  AHLIECLLSKVSAITGFEGDASPFTDVTVDLISNLLRDKNYQSRGFEVMYNGHTGKKLMA 780


>gi|396941935|gb|AFN89684.1| RNA polymerase II, partial [Starmerella bombicola]
          Length = 774

 Score = 1026 bits (2653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/774 (62%), Positives = 609/774 (78%), Gaps = 32/774 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE F +Q++QVALDYIG+RG   G+++DKRI+YA++ILQKE+LPH+   +  
Sbjct: 1    VEMLKPCIEEGFFVQDRQVALDYIGRRGNVTGISKDKRIRYARDILQKELLPHITQQEGY 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KAY+FGY++HRLLL AL RR +DDRDH+G KRLDLAGPLL  LFRMLF+KLTRD+  
Sbjct: 61   ESRKAYFFGYMVHRLLLVALDRREQDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKC+++ K+ NL  A+K+ TIT+GLKYSLATGNWG Q  A  T+AGVSQVLNR T++S
Sbjct: 121  YMQKCIESNKEFNLTLAVKSNTITNGLKYSLATGNWGDQKRAMSTKAGVSQVLNRYTFSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIG++GK+AKP QLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS 
Sbjct: 181  TLSHLRRTNTPIGKDGKIAKPXQLHNTHWGLVCPAETPEGQACGLVKNLSLMTGISVGSP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI+ FL+EWG E  E+ SP      T++FVNG WVG+H +P +L +T++ LRRR D++
Sbjct: 241  SEPIIFFLQEWGMEPLEDFSPHESTNVTRVFVNGVWVGVHHEPTLLDQTMKNLRRRGDIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-RLLIKKRDIIALQQRE-------SPE 655
             E+ +VRDIR +E +I TD GR  RPLF+VE    L + K  +  L   E       SP+
Sbjct: 301  PEITIVRDIREQEFKILTDAGRVYRPLFVVENGGELKLTKDQVYQLLNTEESGLTPESPD 360

Query: 656  DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH--PEE---------------- 697
              GW +LVA G +EYID EEEETTMI+MT  DL  +R+   PEE                
Sbjct: 361  YFGWSNLVANGIVEYIDGEEEETTMIAMTPEDLELSRVQHDPEEVSETIDNGSVSRRLKA 420

Query: 698  ---AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
               + A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM
Sbjct: 421  KGSSTAQTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRM 480

Query: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
            DT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDS+IMNQSSIDRG
Sbjct: 481  DTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSMIMNQSSIDRG 540

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
             FRSLFFRSY D+E+++G  V E+F +P R++T+ +R+G+YDKLD+DGLA PG RVSGED
Sbjct: 541  MFRSLFFRSYLDQERRIGMSVVEEFEKPTRADTLRLRNGTYDKLDEDGLAIPGVRVSGED 600

Query: 875  VIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
            +IIGKT PI  D E  GQ +++ T+RD S  LR +E+G+VDQVLLTTN +GLRFVKVR+R
Sbjct: 601  IIIGKTAPIPPDTEELGQRTKFHTKRDASTPLRSTESGIVDQVLLTTNQEGLRFVKVRMR 660

Query: 933  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
            + ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPHAIPSRMT+  LIEC
Sbjct: 661  TTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTAEGLVPDLIINPHAIPSRMTVAHLIEC 720

Query: 993  IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            ++ KV+A  G EGDATPFT+VTVD +SK L   GYQ RGFE MYNGHTG++LTA
Sbjct: 721  LLSKVSALSGLEGDATPFTEVTVDAVSKLLRDHGYQSRGFEIMYNGHTGKKLTA 774


>gi|396941959|gb|AFN89696.1| RNA polymerase II, partial [Botryozyma nematodophila]
          Length = 776

 Score = 1026 bits (2652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/776 (63%), Positives = 604/776 (77%), Gaps = 36/776 (4%)

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+P +EEAFVIQ+++VALDYIG+RG+ VG+ R+KR++YA++I+QKE+LPH+   +  ET
Sbjct: 1    MLKPCIEEAFVIQSREVALDYIGRRGSAVGINREKRLRYARDIMQKELLPHITQDEGYET 60

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY++HR+LLCAL R   DDRDH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+
Sbjct: 61   RKAFFLGYMVHRMLLCALERSEVDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYM 120

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGVSQVLNR T++STL
Sbjct: 121  QKCVETSKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSSTL 180

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+L+  I+VGS + 
Sbjct: 181  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLSCISVGSPSQ 240

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PI+ FLEEWG E  E+  P   P +T++FVNG W+G HRDP  LV T+R LRRR D++ E
Sbjct: 241  PIIFFLEEWGMEPLEDYVPHASPNSTRVFVNGVWIGTHRDPASLVDTMRTLRRRGDISPE 300

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIAL--QQRESPED 656
            V +VRDIR +E RI+TD GR  RPLF+V+       K  L+++K  I  L  Q  ++PE+
Sbjct: 301  VSIVRDIREREFRIFTDAGRVYRPLFVVDIEDGSPTKGELVLRKEHIHKLLDQDLDAPEE 360

Query: 657  G--GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQA----------------RL 693
               GW  LV  G +EYID EEEET MI+MT  DL     +QA                R+
Sbjct: 361  EQFGWPQLVENGIVEYIDAEEEETIMITMTPEDLEISRQMQAGGNVPDEYEDEIDPAKRV 420

Query: 694  HPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 752
             P    +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  
Sbjct: 421  KPAYNPHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSV 480

Query: 753  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 812
            RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSID
Sbjct: 481  RMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSID 540

Query: 813  RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 872
            RG FRSLFFRSY D+E+++G  V E+F +P R   + ++HG+YDKLDDDGL  PG RVSG
Sbjct: 541  RGLFRSLFFRSYMDQERRIGMSVVEEFEKPVRGEALRLKHGTYDKLDDDGLIAPGVRVSG 600

Query: 873  EDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 930
            +D+IIGKT PI  D E  GQ + + T+RD S  LR +E+G+VDQVLLTTN +GLRFVKVR
Sbjct: 601  DDIIIGKTAPIPPDAEELGQRTNFHTKRDASTPLRSTESGIVDQVLLTTNQEGLRFVKVR 660

Query: 931  VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 990
            +R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PDII+NPHAIPSRMT+  LI
Sbjct: 661  MRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTAEGIVPDIIINPHAIPSRMTVAHLI 720

Query: 991  ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            EC++ KV+A  G EGDATPFT VTV+ IS  L   GYQ RGFE MYNGHTGR+L A
Sbjct: 721  ECLLSKVSALSGLEGDATPFTXVTVEAISGLLRDHGYQSRGFEVMYNGHTGRKLVA 776


>gi|56694302|gb|AAW22891.1| RNA polymerase II second largest subunit [Cryptogramma crispa]
          Length = 537

 Score = 1025 bits (2650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/538 (90%), Positives = 508/538 (94%), Gaps = 1/538 (0%)

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALM YITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWV
Sbjct: 1    PEGQACGLVKNLALMSYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWV 60

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 640
            GIHRDPE+LV+TLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVEKQRLLI
Sbjct: 61   GIHRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLI 120

Query: 641  KKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYA 700
            KK DI ALQQ+E+ E G W+DLV KGFIEY+DTEEEETTMISMTI DLV ARLHPEEAY+
Sbjct: 121  KKSDIRALQQKETTEPG-WYDLVTKGFIEYVDTEEEETTMISMTIQDLVNARLHPEEAYS 179

Query: 701  DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYV 760
            DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYV
Sbjct: 180  DTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYV 239

Query: 761  LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF 820
            LYYPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSSIDRGFFRS+F
Sbjct: 240  LYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFRSIF 299

Query: 821  FRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 880
            +RSYRDEEKK GTLVKE+F RP R +T GMRHGSYDK DDDGLAPPGTRVSGEDVIIGKT
Sbjct: 300  YRSYRDEEKKQGTLVKEEFERPIREHTQGMRHGSYDKXDDDGLAPPGTRVSGEDVIIGKT 359

Query: 881  TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 940
            TPI+QD+   QA RY++RD S  LRHSE+GMVDQVLLTTNADGLR VK+RV S+RIPQIG
Sbjct: 360  TPIAQDDTGTQAQRYSKRDQSTCLRHSESGMVDQVLLTTNADGLRXVKIRVXSIRIPQIG 419

Query: 941  DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 1000
            DKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH
Sbjct: 420  DKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 479

Query: 1001 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            MGKEGDATPFTDVTVDNISKALHKCGYQ RGFETMYNGHTGRRL AMIFLGPTYYQRL
Sbjct: 480  MGKEGDATPFTDVTVDNISKALHKCGYQXRGFETMYNGHTGRRLNAMIFLGPTYYQRL 537


>gi|396941897|gb|AFN89666.1| RNA polymerase II, partial [Yamadazyma mexicana]
          Length = 783

 Score = 1024 bits (2647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/784 (62%), Positives = 604/784 (77%), Gaps = 43/784 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ Q+VALD+IG+RG  +G+ R+KRI+YA++ILQKE+LP++   +  
Sbjct: 1    LEMLKPCVEEGFVIQEQEVALDFIGRRGV-LGIRREKRIQYARDILQKELLPNITQEEGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
             T+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  
Sbjct: 60   ATRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 120  YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS+
Sbjct: 180  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSS 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PIL FLEEWG E  E+ SP+  P +T++FVNG WVG HRDP  LV T+R LRR+ D++
Sbjct: 240  SEPILVFLEEWGLEPLEDYSPSTSPDSTRVFVNGVWVGTHRDPSSLVDTIRSLRRKGDIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPED 656
             EV ++RDIR KE +I+TD GR  RPLF+V+       K  L++KK  I  L   E  + 
Sbjct: 300  PEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDNQYSETKGELVLKKEHIKKLTDSEYDDY 359

Query: 657  G--------GWHDLVAKGFIEYIDTEEEETTMISMTINDLV----------QARLHPEEA 698
            G        GW  LV  G IEY+D EEEET MI+MT  DLV          Q  L  EE 
Sbjct: 360  GYDDEQQSYGWSSLVNDGIIEYVDAEEEETIMIAMTPEDLVASKSALTESEQKNLQMEEQ 419

Query: 699  YAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
              D              TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 420  ERDPAKRIKPTYSGSLHTYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 479

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            +++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 480  VFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 539

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL 
Sbjct: 540  IMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLI 599

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 922
             PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN D
Sbjct: 600  TPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGD 659

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            G +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPS
Sbjct: 660  GAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGIVPDLIINPHAIPS 719

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MYNGHTG+
Sbjct: 720  RMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEEVSKLLREHGYQSRGFEVMYNGHTGK 779

Query: 1043 RLTA 1046
            +L A
Sbjct: 780  KLMA 783


>gi|396941951|gb|AFN89692.1| RNA polymerase II, partial [Dipodascopsis uninucleata]
          Length = 772

 Score = 1023 bits (2646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/772 (62%), Positives = 603/772 (78%), Gaps = 31/772 (4%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EEAFVIQ+++VALD+IG+RG  +G+ ++KR++YA++I+Q+E+LPH+   +  E
Sbjct: 1    EMLKPCIEEAFVIQDREVALDFIGRRGTAMGINKEKRLRYARDIMQRELLPHITQSEGYE 60

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            T+KA++ GY++H++L CAL RR  DDRDH+G KRLDLAGPLL  LFR+LF+KLTRDV  Y
Sbjct: 61   TRKAFFLGYMVHKMLQCALERRELDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDVYKY 120

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +QKCV+  +D NL  A+K  TIT+GL+YSLATGNWG Q  A  +RAGVSQVLNR T++ST
Sbjct: 121  MQKCVETNRDFNLTLAVKPNTITNGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTFSST 180

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ +
Sbjct: 181  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTSISVGTPS 240

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PI+ FLEEWG E  E+  P   P AT++FVNG W+G HRDP  L +T+R LRRR  ++ 
Sbjct: 241  QPIIFFLEEWGMEPLEDYVPHASPNATRVFVNGVWIGTHRDPAALTETIRSLRRRAHISP 300

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDIIAL-QQRESPED 656
            EV ++RDIR KE +I+TD  R  RPLFIV   +       L+++K  I  L    ES E+
Sbjct: 301  EVSIIRDIREKEFKIFTDAXRVMRPLFIVNNDKSSPRNGELMLRKEHISKLIDDFESTEE 360

Query: 657  G--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-----------LHPE------- 696
               GW  LV+ G +EY+D EEEET MI+MT  DL  +R           L P        
Sbjct: 361  DRYGWSSLVSDGIVEYLDAEEEETAMIAMTPEDLEMSRQLNLGTEIAENLDPSYRVKPTA 420

Query: 697  EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 756
             A + T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDT
Sbjct: 421  SASSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYGVRMDT 480

Query: 757  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 816
            +A +LYYPQKPL TTR+ME++ FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG F
Sbjct: 481  MANILYYPQKPLATTRSMEYMKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLF 540

Query: 817  RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 876
            RSLFFRSY D+EK++G  V E+F +P R NT+ M+HG+YDKLDDDGL  PG RVSGED+I
Sbjct: 541  RSLFFRSYMDQEKRVGMSVVEEFEKPVRGNTLRMKHGTYDKLDDDGLIAPGVRVSGEDII 600

Query: 877  IGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 934
            IGKT PI  D E  GQ +++ T+RD S  LR +E+G+VDQVLLTTN +GLRFVK+R+R+ 
Sbjct: 601  IGKTAPIPPDTEELGQRTQFHTKRDVSTPLRSTESGIVDQVLLTTNGEGLRFVKIRMRTT 660

Query: 935  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 994
            ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPHAIPSRMT+  LIEC++
Sbjct: 661  KVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLL 720

Query: 995  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
             KV++  G EGDATPFTDVTV+ +SK L + GYQ RGFE MYNGHTG++L A
Sbjct: 721  SKVSSLSGLEGDATPFTDVTVEAVSKLLREHGYQSRGFEVMYNGHTGKKLMA 772


>gi|56694290|gb|AAW22885.1| RNA polymerase II second largest subunit [Equisetum hyemale]
          Length = 539

 Score = 1023 bits (2645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/541 (89%), Positives = 512/541 (94%), Gaps = 2/541 (0%)

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEGQACGLVKNLALM YITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNG
Sbjct: 1    AETPEGQACGLVKNLALMSYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNG 60

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 637
            CWVGIHRDPE+LVKTLR+LRR+VDVNTEVGVVRDI LKELR+ TDYGRCSRPLFIVE QR
Sbjct: 61   CWVGIHRDPELLVKTLRQLRRQVDVNTEVGVVRDIILKELRLXTDYGRCSRPLFIVENQR 120

Query: 638  LLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 697
            LLIKK DI ALQQR+S  D GW+DLVAKGFIEY+DTEEEETTMISMTI+D+V AR +PEE
Sbjct: 121  LLIKKSDIRALQQRDS-SDSGWYDLVAKGFIEYVDTEEEETTMISMTISDVVNARNNPEE 179

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
            AY+DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ R DTL
Sbjct: 180  AYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRXDTL 239

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFR
Sbjct: 240  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            S+F+RSYRDEEKK GTLVKE+F RP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVII
Sbjct: 300  SIFYRSYRDEEKKQGTLVKEEFERPNRDNTNGMRHGSYDKLDDDGLAPPGTRVSGEDVII 359

Query: 878  GKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            GKTTP+  D++ GQ  RYT+RD S  LRHSE+GM+DQVLLTTNADGLRFVK+RVRSVRIP
Sbjct: 360  GKTTPLPXDDS-GQVQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSVRIP 418

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKFSSRHGQ GTVGMTYTQEDMPW+ EGITPDIIVNPHAIPSRMTIGQLIECIMGKV
Sbjct: 419  QIGDKFSSRHGQXGTVGMTYTQEDMPWSQEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 478

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            AAHMGKEGDATPFTDVTVD+ISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQR
Sbjct: 479  AAHMGKEGDATPFTDVTVDSISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQR 538

Query: 1058 L 1058
            L
Sbjct: 539  L 539


>gi|56694326|gb|AAW22903.1| RNA polymerase II second largest subunit [Dioon edule]
          Length = 538

 Score = 1022 bits (2643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/538 (90%), Positives = 508/538 (94%), Gaps = 1/538 (0%)

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590
            NLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDP++LV
Sbjct: 1    NLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPNATKIFVNGCWVGIHRDPDLLV 60

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
            KTLR+LRR+VDVNTEVGVVRDIRL ELR+YTDYGRCSRPLFIVE QRLLIKK DI  LQQ
Sbjct: 61   KTLRQLRRQVDVNTEVGVVRDIRLSELRLYTDYGRCSRPLFIVENQRLLIKKSDIRRLQQ 120

Query: 651  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT-YTHCEIH 709
            R++    GWH+LV KGFIEY+DTEEEETTMISMTI DLV AR  P  A +   YTHCEIH
Sbjct: 121  RDNLPPPGWHELVTKGFIEYVDTEEEETTMISMTIYDLVNARNSPPTAASIVKYTHCEIH 180

Query: 710  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
            PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLV
Sbjct: 181  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLV 240

Query: 770  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 829
            TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF+RSYRDEEK
Sbjct: 241  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEK 300

Query: 830  KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ 889
            +MGTLVKE+FGRP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++QDE+ 
Sbjct: 301  RMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVTQDESG 360

Query: 890  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            GQA+RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQ
Sbjct: 361  GQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 420

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGTVGMTY QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP
Sbjct: 421  KGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 480

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 481  FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH 538


>gi|2736123|gb|AAB94062.1| RPB140 [Aristolochia gigantea]
          Length = 555

 Score = 1022 bits (2642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/556 (85%), Positives = 516/556 (92%), Gaps = 1/556 (0%)

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGMMCPAETPEGQACGLVKNLALM YITVGSA  PI  FLEEWG E+F EIS AVIPQAT
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMAYITVGSATTPITAFLEEWGMEDFGEISAAVIPQAT 60

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+F+NGCWVGIHR+PE+LVKTLR+LRRRVDVNTEVGVVRD+ LKELR+YTDYGRCSRPLF
Sbjct: 61   KVFLNGCWVGIHRNPELLVKTLRQLRRRVDVNTEVGVVRDVSLKELRVYTDYGRCSRPLF 120

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            IVE QRLLIKK DI++LQQRES E+G WH LV KG++EYIDTEEEETTMISMTI DL  A
Sbjct: 121  IVENQRLLIKKMDILSLQQRESEEEG-WHSLVEKGYVEYIDTEEEETTMISMTIADLAFA 179

Query: 692  RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
            R +PEEAY  TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+YVTNYQ
Sbjct: 180  RENPEEAYCTTYTHCEIHPSMILGVSASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQ 239

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDT AYVLYYPQKPLVTT A EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI
Sbjct: 240  LRMDTQAYVLYYPQKPLVTTHATEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 299

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRGFFRSLFFRSYRDEEK+MGTLV+E+FGRP+R NTMGMRHGSYDKLDDDG APPGTR+S
Sbjct: 300  DRGFFRSLFFRSYRDEEKRMGTLVQEEFGRPNRENTMGMRHGSYDKLDDDGFAPPGTRIS 359

Query: 872  GEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            G+DVIIGKT+PI Q+E  GQ S++T+RDHSISLRHSE+G+VDQVL TTNA+GLRF K+RV
Sbjct: 360  GDDVIIGKTSPIPQEELPGQLSKFTKRDHSISLRHSESGVVDQVLYTTNAEGLRFTKIRV 419

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            RSVRI QIGDKFSSRHGQKGTVGMTYTQEDMPWT++GITPDIIVNPHAIPSRMTIGQLIE
Sbjct: 420  RSVRILQIGDKFSSRHGQKGTVGMTYTQEDMPWTIDGITPDIIVNPHAIPSRMTIGQLIE 479

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            C+MGKVAA +GKEGDATPFT+VTVD I K LH+CG+QMRGFETMYNGHTGRRL AMIF+G
Sbjct: 480  CVMGKVAAEVGKEGDATPFTEVTVDGICKRLHECGFQMRGFETMYNGHTGRRLPAMIFVG 539

Query: 1052 PTYYQRLKHMVDDKIH 1067
            PTYYQRLKHMVDDKIH
Sbjct: 540  PTYYQRLKHMVDDKIH 555


>gi|396941819|gb|AFN89627.1| RNA polymerase II, partial [Zygotorulaspora mrakii]
          Length = 771

 Score = 1022 bits (2642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/771 (63%), Positives = 600/771 (77%), Gaps = 31/771 (4%)

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YA++ILQKE LPH+   +  E+
Sbjct: 1    MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFES 60

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LFRKLT+D+  Y+
Sbjct: 61   RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYM 120

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            Q+ V+  KD N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+STL
Sbjct: 121  QRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 180

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+   
Sbjct: 181  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 240

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N E
Sbjct: 241  PIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPE 300

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRE------- 652
            V +VRDIR KEL+I+TD GR  RPLFIVE       + L ++K  I  L   E       
Sbjct: 301  VSMVRDIREKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHISKLMATEYQDIEGG 360

Query: 653  --SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE-------------E 697
                ED  W  L+ +G +EYID EEEET +ISM   DL   +  PE              
Sbjct: 361  FEDSEDYTWSSLLNEGLVEYIDAEEEETILISMQPEDLEPIQKTPEFDEEDDLAKRIRAT 420

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
             +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+
Sbjct: 421  QHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTM 480

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FR
Sbjct: 481  ANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 540

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSGED+II
Sbjct: 541  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIII 600

Query: 878  GKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN DGL+FVKVRVR+ +
Sbjct: 601  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTK 660

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            +PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC++ 
Sbjct: 661  VPQIGDKFASRHGQKGTIGITYGREDMPFTSEGIVPDLIINPHAIPSRMTVAHLIECLLS 720

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A
Sbjct: 721  KVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMA 771


>gi|56694320|gb|AAW22900.1| RNA polymerase II second largest subunit [Microcycas calocoma]
          Length = 545

 Score = 1021 bits (2640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/545 (89%), Positives = 508/545 (93%), Gaps = 9/545 (1%)

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            ACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHR
Sbjct: 1    ACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPNATKIFVNGCWVGIHR 60

Query: 585  DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 644
            DP++LVKT R+LRR+VDVNTEVGVVRDIRL ELR+YTDYGRCSRPLFIVE QRLLIKK D
Sbjct: 61   DPDLLVKTXRQLRRQVDVNTEVGVVRDIRLSELRLYTDYGRCSRPLFIVENQRLLIKKPD 120

Query: 645  IIALQQRE-----SPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP 695
            I  LQQR+     SP+D     GWH+LV KGFIEY+DTEEEETTMISMTINDLV AR  P
Sbjct: 121  IRRLQQRDQLPPPSPDDENSVRGWHELVTKGFIEYVDTEEEETTMISMTINDLVNARNSP 180

Query: 696  EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
                   YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMD
Sbjct: 181  TATSIVKYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 240

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF
Sbjct: 241  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 300

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLF+RSYRDEEK+MGTLVKE+FGRP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDV
Sbjct: 301  FRSLFYRSYRDEEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDV 360

Query: 876  IIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            IIGKTTP++QDE+ GQA+RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVR
Sbjct: 361  IIGKTTPVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 420

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            IPQIGDKFSSRHGQKGTVGMTY QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG
Sbjct: 421  IPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 480

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYY
Sbjct: 481  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYY 540

Query: 1056 QRLKH 1060
            QRLKH
Sbjct: 541  QRLKH 545


>gi|56694350|gb|AAW22915.1| RNA polymerase II second largest subunit [Cephalotaxus fortunei]
          Length = 533

 Score = 1021 bits (2639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/536 (90%), Positives = 510/536 (95%), Gaps = 3/536 (0%)

Query: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590
            NLALMVYITVGS+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV
Sbjct: 1    NLALMVYITVGSSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLV 60

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
            +TLR+LRR+VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK DI  LQ 
Sbjct: 61   RTLRQLRRQVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIKKVDINNLQA 120

Query: 651  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 710
              S EDG WH+LV +GFIEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHP
Sbjct: 121  --SREDG-WHELVTQGFIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHP 177

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVT
Sbjct: 178  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVT 237

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+
Sbjct: 238  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKR 297

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQG 890
            MGTLVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QDE+ G
Sbjct: 298  MGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESGG 357

Query: 891  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
            Q S+YT+RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQK
Sbjct: 358  QVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQK 417

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF
Sbjct: 418  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 477

Query: 1011 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            TDVTVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKI
Sbjct: 478  TDVTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKI 533


>gi|45120566|gb|AAO64652.2| RNA polymerase II subunit RPB2, partial [Chondrostereum purpureum]
          Length = 770

 Score = 1020 bits (2638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/772 (63%), Positives = 604/772 (78%), Gaps = 27/772 (3%)

Query: 210 TNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPY 269
           TNHVYVF K QP+   ++AE+RS  E   +  S   V+M  R   +  S G  I+AT+PY
Sbjct: 1   TNHVYVFAKGQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRHQER--SMGNIIKATIPY 58

Query: 270 IRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIG 329
           I+ +IPI +VFRALG ++D+DILEHICYD QDTQM+E+L+P +++ FVIQ+++VALD+IG
Sbjct: 59  IKVDIPIWVVFRALGVISDRDILEHICYDMQDTQMLEMLKPCIDDGFVIQDREVALDFIG 118

Query: 330 KRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAE 389
            RG T G++RD+RI+YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR  
Sbjct: 119 NRGTTTGLSRDRRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERREL 178

Query: 390 DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
           DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+
Sbjct: 179 DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITN 238

Query: 450 GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
           GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 239 GLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 298

Query: 509 NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
           N+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P
Sbjct: 299 NTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSSTP 358

Query: 569 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             TK+FVNG W+G+HRDP  LVKT+++LRRR D++ EV VVRDIR KELR+YTD GR  R
Sbjct: 359 -FTKVFVNGVWMGVHRDPANLVKTIKKLRRRDDISHEVSVVRDIREKELRLYTDAGRVCR 417

Query: 629 PLFIVEKQRLLIKKRDI--IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIN 686
           PLFIVE Q+L+++K+ +  IA  Q ++ E   W +LV  G IE +D EEEET MISMT  
Sbjct: 418 PLFIVENQQLVLQKKHVNWIAAGQDDTGEPFKWQNLVKSGLIELLDAEEEETVMISMTPE 477

Query: 687 DLVQARLH--------PEEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHN 727
           DL  +RL         P+  +           A T+THCEIHPS+ILG+CASIIPFPDHN
Sbjct: 478 DLESSRLQQSGISTQDPDAEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHN 537

Query: 728 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
           QSPRNTYQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG N
Sbjct: 538 QSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQN 597

Query: 788 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
           AIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT
Sbjct: 598 AIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPSRDNT 657

Query: 848 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLR 905
           + M+HG+Y KL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+
Sbjct: 658 LRMKHGTYAKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLK 717

Query: 906 HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            +E+GMVDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY
Sbjct: 718 STESGMVDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 769


>gi|396941931|gb|AFN89682.1| RNA polymerase II, partial [Sugiyamaella smithiae]
          Length = 771

 Score = 1020 bits (2638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/771 (62%), Positives = 601/771 (77%), Gaps = 37/771 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE F +Q+++VALDYIG+RG+ +G+ R+KRI+YA++ILQKE+LPH+   +  
Sbjct: 1    LEMLKPCIEEGFFVQDREVALDYIGRRGSAMGINREKRIRYARDILQKELLPHITQEEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY++HR+LLCAL RR  DDRDH+G KRLDLAGPLL  LFRMLF+KLT+D+  
Sbjct: 61   ETRKAFFLGYMVHRMLLCALERREPDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGVSQVLNR T++S
Sbjct: 121  YMQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+A+PRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS 
Sbjct: 181  TLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI+ FLEEWG E  E+  P   P AT+IFVNG W+G+HRDP  LV T+R LRRR D++
Sbjct: 241  SQPIIYFLEEWGMEPLEDYVPHASPNATRIFVNGVWIGVHRDPAQLVDTMRSLRRRGDIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDIIALQQRESPED 656
             EV ++RDIR KE RI+TD GR  RPLF+V+ +        L ++K  +  LQ++E   D
Sbjct: 301  PEVSIIRDIREKEFRIFTDAGRVYRPLFLVDNEEESSSRGELKLRKEHVYELQRQEEEPD 360

Query: 657  G-------GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLH-PEEAYAD-- 701
                    GW  LV+ G +EYID EEEET MI+MT  DL     +QA +  PEE   D  
Sbjct: 361  SLDGSEPTGWSYLVSNGIVEYIDGEEEETVMIAMTPEDLELSRQMQAGIEIPEEEDPDPA 420

Query: 702  ------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 749
                        T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN
Sbjct: 421  RRVKQPYNPNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTN 480

Query: 750  YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 809
            Y  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 481  YSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 540

Query: 810  SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 869
            SID G FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKLD+DGL  PG R
Sbjct: 541  SIDMGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHGTYDKLDEDGLIAPGIR 600

Query: 870  VSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFV 927
            VSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVLLTTN +GLRFV
Sbjct: 601  VSGEDIIIGKTAPIPPDTEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLRFV 660

Query: 928  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
            KVR+R+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHAIPSRMT+ 
Sbjct: 661  KVRMRTTKVPQIGDKFASRHGQKGTIGVTYRREDMPFTAEGVVPDLIINPHAIPSRMTVA 720

Query: 988  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1038
             LIEC++ KV+A  G EGDATPFTDVTVD ISK L   GY  RGFE M NG
Sbjct: 721  HLIECLLSKVSALSGLEGDATPFTDVTVDAISKLLRDHGYHSRGFEVMXNG 771


>gi|46277249|gb|AAS86815.1| RNA polymerase II second largest subunit, partial [Selaginella densa]
          Length = 547

 Score = 1020 bits (2637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/549 (87%), Positives = 514/549 (93%), Gaps = 2/549 (0%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALM YITVGSAA PIL FLEEW TENFEEISPA IP +TKIFVNG 
Sbjct: 1    ETPEGQACGLVKNLALMAYITVGSAANPILVFLEEWSTENFEEISPAAIPNSTKIFVNGS 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHR+P+ LVKTLR+LRR+VDVNTEVGVVRD RLKELR+YTDYGRCSRPLFIVEKQRL
Sbjct: 61   WVGIHREPDNLVKTLRQLRRQVDVNTEVGVVRDTRLKELRLYTDYGRCSRPLFIVEKQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK DI  LQQ+E+ E+G WHDLV KGFIE++DTEEEETTMISMTINDLV ARL+P +A
Sbjct: 121  LIKKSDIRTLQQKEAGENG-WHDLVTKGFIEFVDTEEEETTMISMTINDLVNARLNPGDA 179

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y+ TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 180  YS-TYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 238

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 239  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 298

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            +F+RSYRDEE+K GTLVKE+F +P R +T  MRHGSY+KLDDDG+ PPGTRVSGEDVIIG
Sbjct: 299  IFYRSYRDEERKQGTLVKEEFEKPSRDSTKDMRHGSYEKLDDDGITPPGTRVSGEDVIIG 358

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KTTP+ QDE   QA RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVK+RVRS+RIPQ
Sbjct: 359  KTTPLGQDETGAQAQRYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQ 418

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGTVGMTYTQEDMP+T EGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 419  IGDKFSSRHGQKGTVGMTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 478

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            A MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR+L+AMIF+GPTYYQRL
Sbjct: 479  ALMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFIGPTYYQRL 538

Query: 1059 KHMVDDKIH 1067
            KHMVDDKIH
Sbjct: 539  KHMVDDKIH 547


>gi|396941825|gb|AFN89630.1| RNA polymerase II, partial [Torulaspora delbrueckii]
          Length = 773

 Score = 1020 bits (2637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/773 (63%), Positives = 603/773 (78%), Gaps = 31/773 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YA++ILQKE LPH+   +  
Sbjct: 1    LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LFRKLT+D+  
Sbjct: 61   ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+ V+  KD N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
              PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N
Sbjct: 241  PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDIN 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRE----- 652
             EV +VRDIR KEL+I+TD GR  RPLFIVE       + L ++K  I  L   E     
Sbjct: 301  PEVSMVRDIREKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHIGKLMATEYQDIE 360

Query: 653  ----SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL--VQ-----------ARLHP 695
                  ED  W  L+ +G +EYID EEEET +ISM   DL  VQ           A+   
Sbjct: 361  GGFEDSEDYTWSSLLNEGLVEYIDAEEEETILISMQPEDLEPVQEAHEFNEDDDLAKRIR 420

Query: 696  EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
               +A T+THCEIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMD
Sbjct: 421  ATQHATTFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMD 480

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG 
Sbjct: 481  TMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGL 540

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSGED+
Sbjct: 541  FRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDI 600

Query: 876  IIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN DGL+FVKVRVR+
Sbjct: 601  IIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRT 660

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC+
Sbjct: 661  TKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECL 720

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            + KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A
Sbjct: 721  LSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMA 773


>gi|396941831|gb|AFN89633.1| RNA polymerase II, partial [Vanderwaltozyma polyspora]
          Length = 775

 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/775 (62%), Positives = 605/775 (78%), Gaps = 33/775 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YA++ILQKE LPH+   +  
Sbjct: 1    LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+ LFRKLT+D+  
Sbjct: 61   ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
              PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N
Sbjct: 241  PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDIN 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-D 656
             EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I  L   E  + +
Sbjct: 301  PEVSMIRDIREKELKIFTDAGRVYRPLFIVENDEQLGHKELKVRKGHIARLMATEYQDIE 360

Query: 657  GG--------WHDLVAKGFIEYIDTEEEETTMISMTINDL--VQ-------------ARL 693
            GG        W  L+ +G +EYID EEEET +I+M   DL  VQ             A+ 
Sbjct: 361  GGFEDSEEYTWSSLLNEGLVEYIDAEEEETILIAMQPEDLDPVQEEEEMEVDENVDTAKR 420

Query: 694  HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
                 +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  R
Sbjct: 421  IRSVHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVR 480

Query: 754  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
            MDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDR
Sbjct: 481  MDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDR 540

Query: 814  GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
            G FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HGSYDKLDDDGL  PG RVSGE
Sbjct: 541  GLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDGLIAPGVRVSGE 600

Query: 874  DVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            D+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN DGL+FVKVRV
Sbjct: 601  DIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRV 660

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            R+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIE
Sbjct: 661  RTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIE 720

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            C++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A
Sbjct: 721  CLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMA 775


>gi|396941829|gb|AFN89632.1| RNA polymerase II, partial [Kazachstania viticola]
          Length = 771

 Score = 1018 bits (2633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/771 (62%), Positives = 603/771 (78%), Gaps = 31/771 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  
Sbjct: 1    LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+ LFRKLT+D+  
Sbjct: 61   ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
              PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N
Sbjct: 241  PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDIN 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-D 656
             EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I  L   E  + +
Sbjct: 301  PEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDEALGHKELKVRKGHINKLMATEYQDIE 360

Query: 657  GG--------WHDLVAKGFIEYIDTEEEETTMISMTINDL--VQARLHP----------- 695
            GG        W  L+ +G +EYID EEEET +I+M   DL  +Q  L P           
Sbjct: 361  GGFEDSEEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPIQDDLEPIVDTDPAKRIK 420

Query: 696  EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
                A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMD
Sbjct: 421  ATQNATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMD 480

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG 
Sbjct: 481  TMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGL 540

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSGED+
Sbjct: 541  FRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDI 600

Query: 876  IIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            IIGKTTP++ DE + GQ + Y ++RD S  LR +E G++DQVL+TTN DGL+FVKVRVR+
Sbjct: 601  IIGKTTPVAPDEEELGQRTAYHSKRDASTPLRSTENGIIDQVLVTTNQDGLKFVKVRVRT 660

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC+
Sbjct: 661  TKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECL 720

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            + KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L
Sbjct: 721  LSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKL 771


>gi|56694360|gb|AAW22920.1| RNA polymerase II second largest subunit [Larix occidentalis]
          Length = 534

 Score = 1018 bits (2633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/535 (89%), Positives = 505/535 (94%), Gaps = 1/535 (0%)

Query: 533  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKT 592
            ALMVYITVGS+  PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDPE+LVKT
Sbjct: 1    ALMVYITVGSSPNPILEFLEEWSTENFEEISPAVIPTATKIFVNGCWVGIHRDPELLVKT 60

Query: 593  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 652
            LR+LRR+VDVN EVGVVRDIRLKELR+YTDYGRCSRPLF+VEKQRL IKK DI  LQ+R 
Sbjct: 61   LRQLRRQVDVNPEVGVVRDIRLKELRLYTDYGRCSRPLFVVEKQRLSIKKSDINRLQERT 120

Query: 653  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSL 712
            SP D GWHDLV +GFIEY+DTEEEETTMISMTINDLV AR +P EAY+ TYTHCEIHPSL
Sbjct: 121  SP-DEGWHDLVTRGFIEYVDTEEEETTMISMTINDLVSARNNPAEAYSHTYTHCEIHPSL 179

Query: 713  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 772
            ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTR
Sbjct: 180  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTR 239

Query: 773  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 832
            AMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MG
Sbjct: 240  AMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMG 299

Query: 833  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQA 892
            TLVKE+FG P+R NT+ MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++Q+E  GQ 
Sbjct: 300  TLVKEEFGCPNRENTLNMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVAQEETTGQQ 359

Query: 893  SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
             RY +RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGT
Sbjct: 360  QRYIKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGT 419

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            VGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD
Sbjct: 420  VGMTYTQEDMPWTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 479

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            VTVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 480  VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIH 534


>gi|396941953|gb|AFN89693.1| RNA polymerase II, partial [Lipomyces starkeyi]
          Length = 773

 Score = 1018 bits (2631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/773 (61%), Positives = 604/773 (78%), Gaps = 31/773 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EEAFVIQ+++VALD+IG+RG  +G+ ++KR++YA++I+Q+E+LPH+   +  
Sbjct: 1    LEMLKPCIEEAFVIQDREVALDFIGRRGTAMGINKEKRLRYARDIMQRELLPHITQSEGY 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY++H++L CAL RR  DDRDH+G KRLDLAGPLL  LFR+LF+KLTRD+  
Sbjct: 61   ETRKAFFLGYMVHKMLQCALERREVDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDMYK 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  +D NL  A+K  TIT+GL+YSLATGNWG Q  A  +RAGVSQVLNR T++S
Sbjct: 121  YMQKCVETNRDFNLTLAVKPNTITNGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTFSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG++
Sbjct: 181  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTS 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI+ FLEEWG E  E+  P   P AT++FVNG W+G HRDP  L +T+R LRR   ++
Sbjct: 241  SQPIIYFLEEWGMEPLEDYVPHATPNATRVFVNGVWIGTHRDPAALAETIRSLRRTDHIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDII-ALQQRESPE 655
             EV +VRDIR KE +I+TD GR  RPLF+V+  +       L+++K  +   L+  ES E
Sbjct: 301  AEVSIVRDIREKEFKIFTDAGRVYRPLFVVDTDKSSPHCGELMLRKGHVNRLLEDFESTE 360

Query: 656  DG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-----------LHPEEAY--- 699
            +   GW  LV++G +EY+D EEEET MI+MT  DL  +R           L P       
Sbjct: 361  EDRYGWTSLVSEGIVEYVDAEEEETVMIAMTPEDLEMSRQLQVGVEHSESLDPSHRVKAM 420

Query: 700  ----ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
                A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMD
Sbjct: 421  PSINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYGVRMD 480

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL TTR+ME + FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG 
Sbjct: 481  TMANILYYPQKPLATTRSMEFMKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGL 540

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLFFRSY D+EK++G  V E+F +P R NT+ M+HG+YDKLDDDGL  PG RVSGED+
Sbjct: 541  FRSLFFRSYMDQEKRVGMAVVEEFEKPIRGNTLRMKHGTYDKLDDDGLIAPGVRVSGEDI 600

Query: 876  IIGKTTPI-SQDEAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            IIGKT PI  + E  GQ +++ T+RD S  LR +E+G+VDQVLLTTN +GLRFVK+R+R+
Sbjct: 601  IIGKTAPIPPETEELGQRTQFHTKRDVSTPLRSTESGIVDQVLLTTNGEGLRFVKIRMRT 660

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC+
Sbjct: 661  TKVPQIGDKFASRHGQKGTIGVTYKHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECL 720

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
              KV++  G EGDATPFTDVTVD +SK L + GYQ RGFE MYNGHTG++  A
Sbjct: 721  XSKVSSLSGLEGDATPFTDVTVDAVSKLLREHGYQSRGFEVMYNGHTGKKXMA 773


>gi|396941827|gb|AFN89631.1| RNA polymerase II, partial [Naumovozyma dairenensis]
          Length = 775

 Score = 1018 bits (2631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/775 (62%), Positives = 602/775 (77%), Gaps = 33/775 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  
Sbjct: 1    LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LFRKLT+D+  
Sbjct: 61   ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
              PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L+ TLR LRR+ D+N
Sbjct: 241  PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMDTLRTLRRKGDIN 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-D 656
             EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I  L   E  + +
Sbjct: 301  PEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHINKLMATEYQDIE 360

Query: 657  GG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD------- 701
            GG        W  L+ +G +EYID EEEET +I+M   DL    ++ +E   D       
Sbjct: 361  GGFEDVEEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPPAVNEDEPMVDDLDPAKR 420

Query: 702  --------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
                    T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  R
Sbjct: 421  IRAVQHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVR 480

Query: 754  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
            MDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDR
Sbjct: 481  MDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDR 540

Query: 814  GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
            G FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSGE
Sbjct: 541  GLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGE 600

Query: 874  DVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            DVIIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN DGL+FVKVRV
Sbjct: 601  DVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRV 660

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            R+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIE
Sbjct: 661  RTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIE 720

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            C++ KVAA  G EGDA+PFTD+TV+ IS+ L + GYQ RGFE MYNGHTG++L A
Sbjct: 721  CLLSKVAALSGNEGDASPFTDITVEGISRLLREHGYQSRGFEVMYNGHTGKKLMA 775


>gi|396941920|gb|AFN89677.1| RNA polymerase II, partial [Candida blankii]
          Length = 771

 Score = 1017 bits (2630), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/771 (62%), Positives = 603/771 (78%), Gaps = 37/771 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+LRP +EE FV+Q+++VALD IG+RG+ +G+ R+KRI+YA++ILQKE+LPH+   +  
Sbjct: 1    LEMLRPCIEEGFVVQDREVALDMIGRRGSAIGINREKRIRYARDILQKELLPHITQEEGY 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E +KA++ GY++HR+LL AL RR  DDRDH+G KRLDLAGPLL  LFRMLF+KLTRD+  
Sbjct: 61   ENRKAFFLGYMVHRMLLVALERREPDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  TRAGVSQVLNR T++S
Sbjct: 121  YLQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSTRAGVSQVLNRYTFSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+A+PRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS 
Sbjct: 181  TLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI+ FLEEWG E  E+  P   P AT++FVNG W+G+HRDP  LV T+R LRR+ D++
Sbjct: 241  SQPIVYFLEEWGMEPLEDYVPHASPNATRVFVNGVWIGVHRDPATLVDTMRALRRKGDIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK---RDIIALQQRES 653
             EV ++RDIR KE RI+TD GR  RPLF+V+       K  L ++K   R++I +++   
Sbjct: 301  PEVSIIRDIREKEFRIFTDAGRVYRPLFLVDNDEDSPYKGELKLRKDHVRELIRMEEEGD 360

Query: 654  PEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR--------LHPE----- 696
             E G     W  LV  G +EYID EEEET MI+MT  DL  +R        L  E     
Sbjct: 361  METGEPVSTWSSLVNNGIVEYIDGEEEETVMIAMTPEDLEVSRQMQAGQEILEEEDPDPA 420

Query: 697  ----EAY---ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 749
                +AY   A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN
Sbjct: 421  RRVKQAYNPNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTN 480

Query: 750  YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 809
            Y  RMDT++ +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 481  YSVRMDTMSNILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 540

Query: 810  SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 869
            SIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKLDDDGL PPG R
Sbjct: 541  SIDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHGTYDKLDDDGLIPPGVR 600

Query: 870  VSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFV 927
            VSGED+IIGKT PI  D E  GQ +++ T+RD S  LR +E+G+VDQV+LTTN +GLRFV
Sbjct: 601  VSGEDIIIGKTAPIPPDTEELGQRTKFHTKRDASTPLRSTESGIVDQVVLTTNQEGLRFV 660

Query: 928  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
            KVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMT+ 
Sbjct: 661  KVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVA 720

Query: 988  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1038
             LIEC++ KV+A  G EGDATPFTDVTVD ISK L + GYQ RGFE M NG
Sbjct: 721  HLIECLLSKVSALSGLEGDATPFTDVTVDAISKLLREHGYQSRGFEVMXNG 771


>gi|56675894|emb|CAD98811.2| RNA polymerase II, second largest subunit [Gardenia sp. Oxelman 2319]
          Length = 545

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/544 (94%), Positives = 528/544 (97%), Gaps = 4/544 (0%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEG ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC
Sbjct: 1    ETPEG-ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 59

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHRDP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 60   WVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 119

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK+DI ALQ RESP++ GWHDLVA+GFIEYIDTEEEETTMISMTINDLV ARL+PEEA
Sbjct: 120  LIKKKDIQALQARESPDECGWHDLVARGFIEYIDTEEEETTMISMTINDLVTARLNPEEA 179

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y+DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 180  YSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 239

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 240  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 299

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 300  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 359

Query: 879  KTTPISQDEAQ---GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            KTTPI QD+AQ     ASRYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVR
Sbjct: 360  KTTPIHQDDAQVPSALASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 419

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            +PQIGDKFSSRHGQKGTVGMTYTQEDMP+T+EGITPDIIVNPHAIPSRMTIGQLIECIMG
Sbjct: 420  VPQIGDKFSSRHGQKGTVGMTYTQEDMPFTIEGITPDIIVNPHAIPSRMTIGQLIECIMG 479

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE MYNGHTGR LTA IFLGPTYY
Sbjct: 480  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYY 539

Query: 1056 QRLK 1059
            QR K
Sbjct: 540  QRXK 543


>gi|396941939|gb|AFN89686.1| RNA polymerase II, partial [Yarrowia lipolytica]
          Length = 780

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/780 (61%), Positives = 607/780 (77%), Gaps = 41/780 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EEAFVIQ+++VALDYIG+RG+ VGV R++R++YA++ILQKE+LPH+   +  
Sbjct: 1    LEMLKPCIEEAFVIQDREVALDYIGRRGSAVGVNRERRVRYARDILQKELLPHITQEEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KAY+ GY++HR+LL ALGR+  DDRDH+G KRLDLAGPL+ G+FRMLF+KLT+D+  
Sbjct: 61   ETRKAYFLGYMVHRMLLVALGRKEPDDRDHFGKKRLDLAGPLMAGIFRMLFKKLTKDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+ KCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  +RAGVSQVLNR T+AS
Sbjct: 121  YMLKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFAS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            ++PI+ FL+EWG E  E+  P     +T++FVNG WVG+HRD   L   ++ LRR  D+ 
Sbjct: 241  SFPIINFLDEWGMEPLEDYVPHTHTTSTRVFVNGVWVGVHRDATQLTDMIKSLRRMGDIE 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQR----- 651
            +EV ++RDIR KE+RI+TD GR  RPLF+VE       K  L+++K  I  LQQ+     
Sbjct: 301  SEVSIIRDIREKEIRIFTDAGRVYRPLFVVENNPDAERKGELVLQKDHIYQLQQQMAEQA 360

Query: 652  -------ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLH-PEE- 697
                   +  ++ GW+ LV  G IEYID EEEET MI+MT  DL     +QA +  PE+ 
Sbjct: 361  ETEGDEGKGDKNTGWNWLVDNGVIEYIDGEEEETVMIAMTPEDLEFSRQMQAGVEMPEDE 420

Query: 698  ------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 745
                         ++ T+THCEIHPS+ILG+ ASIIPFPDHNQSPRNTYQSAMGKQAMG+
Sbjct: 421  LDPARRVKPAYNPHSHTWTHCEIHPSMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGV 480

Query: 746  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 805
            ++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSV+
Sbjct: 481  FLTNYDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVV 540

Query: 806  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 865
            MNQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ M+HG+YDKLDDDGL  
Sbjct: 541  MNQSSIDRGLFRSLFFRSYMDQERRVGMSVVEEFEKPTRADTLRMKHGTYDKLDDDGLVC 600

Query: 866  PGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADG 923
            PG RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVLLTTN +G
Sbjct: 601  PGVRVSGEDIIIGKTAPIPPDAEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEG 660

Query: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
            LRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ EG+ PDII+NPHAIPSR
Sbjct: 661  LRFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGVVPDIIINPHAIPSR 720

Query: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043
            MT+  LIEC++ KV+   G EGDATPFTDVTVD ISK L   GYQ RGFE MY+GHTG++
Sbjct: 721  MTVAHLIECLLSKVSCLSGLEGDATPFTDVTVDAISKLLRSHGYQSRGFEVMYHGHTGKK 780


>gi|67475595|ref|XP_653488.1| DNA-directed RNA polymerase subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56470445|gb|EAL48102.1| DNA-directed RNA polymerase subunit, putative [Entamoeba histolytica
            HM-1:IMSS]
 gi|449706687|gb|EMD46481.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
            histolytica KU27]
          Length = 1170

 Score = 1015 bits (2625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/1188 (44%), Positives = 744/1188 (62%), Gaps = 53/1188 (4%)

Query: 21   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 80
            ++I  E  W +I A+F+E GLV+QQL S++ FI+     I  ++  IEI   S       
Sbjct: 8    QQIQPEQFWYLIDAHFKENGLVKQQLSSYNNFIKKVRDVITSDTTKIEI---SNAEVLGI 64

Query: 81   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
            S   E  + I         P ++     +A+LFP  ARLR+LTYS  L V     + K G
Sbjct: 65   SANDEEEHTIVLTDPIFHFPKVSTGSKASASLFPHEARLRSLTYSCQLEVKAKDTIRKNG 124

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN-SEKDLTELGECPYDQGGYFIINGSE 199
               EE+T      K+ I  +P ML+S  C L +  ++  +    EC ++QGGYFII GSE
Sbjct: 125  --AEEITTV---PKIDIASIPSMLKSDVCRLKRCVTQPSMINKDECSFEQGGYFIIKGSE 179

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
            KV+IAQEKM+ N V VF+     KY Y   + S+A   N    T  +RM      K    
Sbjct: 180  KVVIAQEKMAPNTVLVFEGSDQLKYPYEGNINSLAS--NDEVRTHKIRMDYPKLDKSRLK 237

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLE--EAFV 317
             +    +L  +  ++P++++F ALG+  D+ I+E IC+D  D +M  ++  +++  E   
Sbjct: 238  IKVPVLSLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTT 297

Query: 318  IQNQQVALDYIGKRGATVGVTR------DKRIKYAKEILQKEMLPHVGTGDFCETKKAYY 371
             ++ +  L    K+    GV         K  +   E L+K++LPH+GT +F    KA +
Sbjct: 298  TEDARRWLGEHSKKTNKEGVIEIVSENIQKLQRDGTEKLKKDLLPHIGTDNF--ESKAQF 355

Query: 372  FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 431
             GY+ +  L    G+R  DDRDH   KR+ + G L+  LF+   +++ +  RA +QK + 
Sbjct: 356  LGYMTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLS 415

Query: 432  NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 491
            + K +     +   TIT+    +L TGNW Q     +R GV+QVL+RLT+ S L++LR++
Sbjct: 416  SNKALEYAKPLSFPTITTDFTKALGTGNWPQPGGKESRHGVAQVLSRLTFTSALAYLRKI 475

Query: 492  NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 551
            +SP+  + K  KPRQLHN+QWG +CPAETPEG++CGLVK L+LM  ITV      + E  
Sbjct: 476  SSPVEGKRKTQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVALQDEQVDEIK 535

Query: 552  EEWGTE---NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRR---RVDVNTE 605
            E    +   N  + +   +   TK+F+NG W+     P+ L++ L+  R+   +  V   
Sbjct: 536  EALDCQYVCNINDCTGEKMNNITKVFLNGVWLKCSEQPQKLLEELKNYRKNSTKGKVKKV 595

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR----LLIKKRDIIALQQRESPEDGG--- 658
            + +V D   KELRIYTD GRC+RPLF V        L +K+  I  L  R   E  G   
Sbjct: 596  MSMVLDQLHKELRIYTDAGRCTRPLFTVSNNNGHYTLNLKQSQITELCSRLDNESNGTEK 655

Query: 659  ---WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILG 715
               W++ ++KG IEY+D +EEE +MI+M  +DL       E   +  YTHCEIHP+L++G
Sbjct: 656  TKFWNNFLSKGIIEYVDADEEEMSMIAMFPSDLDNT----EGGSSKNYTHCEIHPALVMG 711

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            V  SIIPFPDHNQSPRNTYQ AMGKQA+G+Y +NYQ R+D+L +VL+YPQKPLV+TRA E
Sbjct: 712  VLGSIIPFPDHNQSPRNTYQCAMGKQAIGVYASNYQLRLDSLGHVLFYPQKPLVSTRAAE 771

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
            ++ F  +PAGINAIVA+ CYSGYNQEDSV+MNQ SIDRG FRS+ F+++ ++ KK  T  
Sbjct: 772  YVKFGHIPAGINAIVAVCCYSGYNQEDSVMMNQGSIDRGLFRSMAFKTFSEDAKKSET-T 830

Query: 836  KEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR 894
            +  F +P  +N+      S Y+K+D DG+  PGT+V  +D+++             +   
Sbjct: 831  ELMFFKPSENNSEITEDISKYEKVDVDGILAPGTKVKPDDILVAGFY---------ENKN 881

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
             T +D S+  +  E G+VDQV++T    G ++++V++RS+RIPQIGDKFSSRHGQKGTVG
Sbjct: 882  KTLKDCSLRYKPRENGVVDQVVVTNAQSGTKYIRVKMRSIRIPQIGDKFSSRHGQKGTVG 941

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF-TDV 1013
            MTY QEDMP+T+EGI+PDII+NPHAIPSRMT+GQL+EC++GKV A +G     TPF  DV
Sbjct: 942  MTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLVECLLGKVGALVGDVQSGTPFQKDV 1001

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TVD I + LHK  YQ RG+E +++GHTGR+L +++++GPTYYQRLKH+VDDK+H R  GP
Sbjct: 1002 TVDRIGERLHKLKYQRRGYEALFSGHTGRKLDSLVYIGPTYYQRLKHLVDDKVHGRATGP 1061

Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
               LTRQP EGRSRDGGLR GEMERDCMI+HG S  LKERLF  SD Y+++VC+ C + A
Sbjct: 1062 YATLTRQPLEGRSRDGGLRLGEMERDCMISHGVSSLLKERLFLASDKYQIYVCDKCHMPA 1121

Query: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            +AN K  +F+C  CK+KT I +V IPYACKLLFQELM+MA+ PR+ T+
Sbjct: 1122 VANHKACTFQCSCCKDKTHISKVDIPYACKLLFQELMSMAVCPRIYTE 1169


>gi|83415469|gb|ABC17942.1| RNA polymerase II second largest subunit, partial [Basidiobolus
            ranarum]
          Length = 720

 Score = 1015 bits (2625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/719 (66%), Positives = 577/719 (80%), Gaps = 23/719 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KR+D AGPLL  LFRML RKLT+DV  Y+QKC+D+ ++ NL  A+K+ TIT+GLKYSLAT
Sbjct: 2    KRMDPAGPLLAMLFRMLXRKLTKDVGRYLQKCIDSNREFNLTLAVKSNTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A   RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YI+VG+ + P++E L +W  E+ E+ S   I  ATKIFVN
Sbjct: 122  PAETPEGQACGLVKNLALMSYISVGNPSAPVVEVLADWAMESLEQFSANNIADATKIFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVGIHRDP  L++T+RR RRRVD++ EV +VRDIR KE+R YTD GR  RPL++VE Q
Sbjct: 182  GVWVGIHRDPGNLIETMRRFRRRVDISPEVSIVRDIRDKEIRFYTDAGRVCRPLYVVENQ 241

Query: 637  RLLIKKRDIIALQQRE-SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP 695
            R+ ++K  ++ALQ RE   E  GW DLV  G +EY+D EEEE +MI MT  DL ++R++ 
Sbjct: 242  RITLRKEHVVALQMREYDGEPFGWQDLVVNGIVEYLDAEEEEVSMICMTPEDLAESRMYS 301

Query: 696  EEAY-----AD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
            +  Y     AD              T+THCEIHPS+ILG CASIIPFPDHNQSPRNTYQS
Sbjct: 302  KLGYIPEREADIASRVKSSAALITHTWTHCEIHPSMILGTCASIIPFPDHNQSPRNTYQS 361

Query: 737  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
            AMGKQAMGIYVTNYQ RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAI CYS
Sbjct: 362  AMGKQAMGIYVTNYQLRMDTMANILYYPQKPLCTTRAMEYLRFRELPAGQNAIVAILCYS 421

Query: 797  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 856
            GYNQEDS+IMNQ+SIDRG FRS+F+RSY D+EKK+G +V E+F +P R +T+ ++ G+Y+
Sbjct: 422  GYNQEDSLIMNQTSIDRGLFRSIFYRSYMDQEKKVGMMVMEEFEKPTRESTLRLKRGTYE 481

Query: 857  KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQ 914
            KL+ DGL  PGTRVSG+D+IIGKT PI  D E  GQ ++ + +RD S  LR +E G+VDQ
Sbjct: 482  KLEGDGLIAPGTRVSGDDIIIGKTAPIPPDSEELGQRTKTHNKRDASTPLRSTENGIVDQ 541

Query: 915  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 974
            V+LTTN +GL+FVKVRVRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP+  EGI PD+I
Sbjct: 542  VMLTTNQEGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTYRQEDMPFNREGIVPDLI 601

Query: 975  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 1034
            +NPHAIPSRMTIG ++EC++ KV+   G EGDATPFT+VTV+ IS AL + GYQ RGFE 
Sbjct: 602  INPHAIPSRMTIGHMVECLLSKVSTLSGNEGDATPFTEVTVEAISHALQEHGYQKRGFEV 661

Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            ++NGHTGR+LTA I+ GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 662  LFNGHTGRKLTAQIYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 720


>gi|407852465|gb|EKG05946.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
          Length = 1186

 Score = 1015 bits (2625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/1192 (45%), Positives = 773/1192 (64%), Gaps = 43/1192 (3%)

Query: 4    DDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
            +DY  + +H    +     I  ED W +IS++F EKGLV QQ+DS+++F+   +  +   
Sbjct: 20   EDYTVDGEHAGSTD-----IDSEDIWEIISSFFREKGLVHQQIDSYNDFLLR-IPRMARS 73

Query: 64   SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKP---MMTESDGETATLFPKAARLR 120
              ++  R + Q  PG Q++     Y++S   + +  P   +   S  E   LFP   RLR
Sbjct: 74   LLEVVPRQDEQFEPGTQTETEPDQYRLSLEDVVIGNPSHEVSGFSRHEMHPLFPNECRLR 133

Query: 121  NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT 180
            +LTY A   V +  RV +   +    T  Q+     +G++PIML+S  C L    E +L 
Sbjct: 134  DLTYDANAQVTLGIRVYRSREEQPYRTFLQNME---LGRIPIMLKSMRCNLQNKDEDELP 190

Query: 181  ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP 240
             L ECP+DQGGYF+I+G+EKVLIAQE+ + NHVY F +++      + E++S+ E     
Sbjct: 191  RLNECPHDQGGYFVISGTEKVLIAQERQAANHVYAFSRQK----GLLCEIKSIVEGSLNK 246

Query: 241  PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ 300
            P T+ + M  +    G    + +   +  +   IP+ ++FRAL   +DK+IL+ +  D +
Sbjct: 247  PRTLQILMPYKKKGPGHGY-ENLLCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLK 305

Query: 301  DTQMMELLRPSLEEAFVIQ--NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHV 358
            D  M+E+LR S+E+A  +Q   +  AL +IGKR      +R+   + A+ +L +++LPH+
Sbjct: 306  DAAMLEMLRGSMEDASTLQIFTRDEALWFIGKRLGKQD-SRENLQRDAQGLLMRDLLPHM 364

Query: 359  GTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 418
            G     +  K  + GY++HRLLL ALGRR + DRD  G+KR+D+AG LL         ++
Sbjct: 365  GVDCAADRSKCLFIGYMVHRLLLLALGRREDTDRDFLGHKRIDVAGALLTFQLNQFLVQV 424

Query: 419  TRDVRAYVQKCVDN-GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLN 477
             +++   V     N G  V+    + ++ IT GL+  LATGN+G   +   + GV+Q LN
Sbjct: 425  RKEMVKTVHDYSTNRGGVVSFGRILHSRLITDGLRRCLATGNFGDMKSGNIKTGVAQTLN 484

Query: 478  RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 537
            RLTY+S+LS+LRR+ +PI    K  KPR LH +QWG +CP ETPEG + GL+KNLALM  
Sbjct: 485  RLTYSSSLSNLRRIQNPISASSKATKPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCL 544

Query: 538  ITVGSAAYPILEFLEEWGTENFEEIS-PAVIP-QATKIFVNGCWVGIHRDPEMLVKTLRR 595
            I+ GS    +++ ++   T  F  I  P +   +  ++FVNG  +G+HRDPE L++ LR 
Sbjct: 545  ISRGSDHTGVVQAVQARIT-GFHSIDLPGLADVRVARVFVNGTLIGVHRDPERLLRELRA 603

Query: 596  LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPE 655
             RR  +++ EV +VRDIR +E+R+++D GRC RPLF+VE+ R+ ++K  I  L +     
Sbjct: 604  RRRGGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVERSRIKLQKTGIGELLEPSKTL 663

Query: 656  DG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 711
             G     W+ ++ KG++E ID EEE++ +I+MT+ ++ +            Y+HCE+ PS
Sbjct: 664  GGKREISWNRIIKKGYVELIDCEEEDSLLIAMTMTEVSKNYY---------YSHCEMDPS 714

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            +ILG+CASIIP+P+HNQSPRNTYQSAMGKQAMGIY +N+  RMDT A+VL+YPQKPLV T
Sbjct: 715  MILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRT 774

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            +AM ++    LPAG NA+VAIACYSGYNQEDS+IM++S+++RGFFRS F+RSY+  E++ 
Sbjct: 775  KAMSYMRSNDLPAGHNAVVAIACYSGYNQEDSIIMSRSAVERGFFRSAFWRSYKATEERK 834

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 891
               V+E F  PDR     ++   Y KLD DGL  PG  V G D+++GKT PIS+ + +  
Sbjct: 835  KD-VRETFENPDR-KICRVKRADYTKLDADGLIKPGMPVIGGDILVGKTIPISEAKLENA 892

Query: 892  A---SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            A   +R  +RD SI+ R SE G+V++V+LT N+ G RF KV++R+++IP IGDKF SRHG
Sbjct: 893  ALDDTRLLKRDCSIASRTSEKGVVERVMLTENS-GNRFTKVKIRTIKIPNIGDKFCSRHG 951

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT G+ + QEDMP+  +GI PD+I+NPHAIPSRMT+  LIE + GKVA + G E  AT
Sbjct: 952  QKGTNGIQFRQEDMPFNRDGIVPDLIINPHAIPSRMTVAHLIETLAGKVACYKGSEVYAT 1011

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            PF  V V++  KALH+  +Q  G E +YNGHTG  L  +IF GPTYYQRLKH+  DKIH+
Sbjct: 1012 PFCSVVVEDFGKALHQLKFQRYGNECLYNGHTGSPLDHLIFFGPTYYQRLKHLSGDKIHA 1071

Query: 1069 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 1128
            R RGP+Q L RQP EGR+ +GGLRFGEMERDCM+++GAS +L+ERLF  SD Y VHVC  
Sbjct: 1072 RPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNI 1131

Query: 1129 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            CG I  A+ ++N ++C+GC N T I Q  +PYACKLLFQELM+MAI PR+ T
Sbjct: 1132 CGTICAADTEQNVYKCQGCDNDTRISQTLMPYACKLLFQELMSMAILPRLGT 1183


>gi|56694304|gb|AAW22892.1| RNA polymerase II second largest subunit [Dicksonia antarctica]
          Length = 525

 Score = 1015 bits (2624), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/526 (90%), Positives = 501/526 (95%), Gaps = 1/526 (0%)

Query: 535  MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 594
            M YITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PE+LV+TLR
Sbjct: 1    MSYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHREPELLVRTLR 60

Query: 595  RLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESP 654
            +LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK DI ALQQ+E+ 
Sbjct: 61   QLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKETT 120

Query: 655  EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLIL 714
            E  GW+DLV KGFIEY+DTEEEETTMISMTI DLV ARLHPEEAY+DTYTHCEIHPS+IL
Sbjct: 121  E-AGWYDLVTKGFIEYVDTEEEETTMISMTIQDLVNARLHPEEAYSDTYTHCEIHPSMIL 179

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAM
Sbjct: 180  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAM 239

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            EHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSS+DRGFFRS+F+RSYRDEEKK GTL
Sbjct: 240  EHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSVDRGFFRSIFYRSYRDEEKKQGTL 299

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR 894
            VKE+F RP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD+   QA R
Sbjct: 300  VKEEFERPNRENTSGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTGSQAQR 359

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            Y++RD S  LRHSE+GMVDQVLLTTNADGLRFVK+RVRS+RIPQIGDKFSSRHGQKGTVG
Sbjct: 360  YSKRDQSTCLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVG 419

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            MTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT
Sbjct: 420  MTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 479

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            VDNISKALHKCGYQMRGFETMYNGHTGRRL AMIFLGPTYYQRLKH
Sbjct: 480  VDNISKALHKCGYQMRGFETMYNGHTGRRLNAMIFLGPTYYQRLKH 525


>gi|167385143|ref|XP_001737225.1| DNA-directed RNA polymerase II subunit RPB2 [Entamoeba dispar SAW760]
 gi|165900064|gb|EDR26512.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
            dispar SAW760]
          Length = 1170

 Score = 1015 bits (2624), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/1188 (44%), Positives = 744/1188 (62%), Gaps = 53/1188 (4%)

Query: 21   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 80
            ++I  +  W +I A+F+E GLV+QQL S++ FI+     I  ++  IEI   S       
Sbjct: 8    QQIQPDQFWYLIDAHFKENGLVKQQLSSYNNFIKKVRDVITSDTTKIEI---SNAEVLGI 64

Query: 81   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
            S   E  + I         P ++     +A+LFP  ARLR+LTY+  L V     + K G
Sbjct: 65   SANDEEEHTIVLTDPIFHFPKVSTGSKASASLFPHEARLRSLTYACQLEVKAKDTIRKNG 124

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN-SEKDLTELGECPYDQGGYFIINGSE 199
               EE+T      K+ I  +P ML+S  C L +  ++  +    EC ++QGGYFII GSE
Sbjct: 125  --TEEITTV---PKIDIASIPSMLKSDVCRLKRCVTQPSMISKDECSFEQGGYFIIKGSE 179

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
            KV+IAQEKM+ N V VF+     KY Y   + S+A   N    T  +RM      K    
Sbjct: 180  KVVIAQEKMAPNTVLVFEGSDQLKYPYEGNINSLAS--NDEVRTHKIRMDYPKLDKSRLK 237

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLE--EAFV 317
             +    TL  +  ++P++++F ALG+  D+ I+E IC+D  D +M  ++  +++  E   
Sbjct: 238  IKVPVLTLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTT 297

Query: 318  IQNQQVALDYIGKRGATVGVTR------DKRIKYAKEILQKEMLPHVGTGDFCETKKAYY 371
             ++ +  L    K+    GV         K  +   E L+K++LPH+GT +F    KA +
Sbjct: 298  TEDARRWLGEHSKKTNKEGVIEIVSENIQKLQRDGTEKLKKDLLPHIGTDNF--ESKAQF 355

Query: 372  FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 431
             GY+ +  L    G+R  DDRDH   KR+ + G L+  LF+   +++ +  RA +QK + 
Sbjct: 356  LGYMTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLS 415

Query: 432  NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 491
            + K +     +   TITS    +L TGNW Q     +R GV+QVL+RLT+ S L++LR++
Sbjct: 416  SNKTLEYAKPLSFPTITSDFTKALGTGNWPQPGGKESRHGVAQVLSRLTFTSALAYLRKI 475

Query: 492  NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 551
            +SP+  + K  KPRQLHN+QWG +CPAETPEG++CGLVK L+LM  ITV      + E  
Sbjct: 476  SSPVEGKRKTQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVALQDEQVDEIK 535

Query: 552  EEWGTE---NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRR---RVDVNTE 605
            E    +   N  + +   +   TK+F+NG W+     P+ L++ L+  R+   +  V   
Sbjct: 536  EALDCQYVCNINDCTGEKMNNITKVFLNGVWLKCSEQPQKLLEELKNYRKNSTKGKVKKV 595

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR----LLIKKRDIIALQQRESPEDGG--- 658
            + +V D   KELRIYTD GRC+RPLF V        L +K+  I  L  R   E  G   
Sbjct: 596  MSMVLDQLHKELRIYTDAGRCTRPLFTVSNNNGHYTLNLKQSQITELCSRLDNESNGTEK 655

Query: 659  ---WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILG 715
               W++ ++KG IEY+D +EEE +MI+M  +DL       E   +  YTHCEIHP+L++G
Sbjct: 656  TKFWNNFLSKGIIEYVDADEEEMSMIAMFPSDLDNT----EGGSSKNYTHCEIHPALVMG 711

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            V  SIIPFPDHNQSPRNTYQ AMGKQA+G+Y +NYQ R+D+L +VL+YPQKPLV+TRA E
Sbjct: 712  VLGSIIPFPDHNQSPRNTYQCAMGKQAIGVYASNYQLRLDSLGHVLFYPQKPLVSTRAAE 771

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
            ++ F  +PAGINAIVA+ CYSGYNQEDSV+MNQ SIDRG FRS+ F+++ ++ KK  T  
Sbjct: 772  YVKFGHIPAGINAIVAVCCYSGYNQEDSVMMNQGSIDRGLFRSMAFKTFSEDAKKSET-T 830

Query: 836  KEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR 894
            +  F +P  +N+      S Y+K+D DG+  PGT+V  +D+++             +   
Sbjct: 831  ELMFFKPSENNSEITEDISKYEKVDVDGILAPGTKVKPDDILVAGFY---------ENKN 881

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
             T +D S+  +  E G+VDQV++T    G ++++V++RS+RIPQIGDKFSSRHGQKGTVG
Sbjct: 882  KTLKDCSLRYKPRENGVVDQVVVTNAQSGTKYIRVKMRSIRIPQIGDKFSSRHGQKGTVG 941

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF-TDV 1013
            MTY QEDMP+T+EGI+PDII+NPHAIPSRMT+GQL+EC++GKV A +G     TPF  D+
Sbjct: 942  MTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLVECLLGKVGALVGDVQSGTPFQKDI 1001

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TVD I + LHK  YQ RG+E +++GHTGR+L +++++GPTYYQRLKH+VDDK+H R  GP
Sbjct: 1002 TVDKIGERLHKLKYQRRGYEALFSGHTGRKLDSLVYIGPTYYQRLKHLVDDKVHGRATGP 1061

Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
               LTRQP EGRSRDGGLR GEMERDCMI+HG S  LKERLF  SD Y+++VC+ C + A
Sbjct: 1062 YATLTRQPLEGRSRDGGLRLGEMERDCMISHGVSSLLKERLFLASDKYQIYVCDKCHMPA 1121

Query: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            +AN K  +F+C  CK+KT I +V IPYACKLLFQELM+MA+ PR+ T+
Sbjct: 1122 VANHKACTFQCSCCKDKTHISKVDIPYACKLLFQELMSMAVCPRIYTE 1169


>gi|396941941|gb|AFN89687.1| RNA polymerase II, partial [Phaffomyces opuntiae]
          Length = 771

 Score = 1014 bits (2623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/771 (62%), Positives = 605/771 (78%), Gaps = 29/771 (3%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE  VIQ+++VALDYIG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  
Sbjct: 1    LEMLKPCVEEGXVIQDREVALDYIGRRGNALGIRKEKRIQYAKDILQKEFLPHITQREGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+LF+KLTRD+  
Sbjct: 61   ESRKAFFLGYMINRLLLCALERKGQDDRDHFGKKRLDLAGPLLANLFRVLFKKLTRDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            ++Q+ V+ G D NL+ A+KA TITSGL YSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  FMQRSVETGVDFNLKLAVKATTITSGLXYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTG 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PIL FLEEWG E  EE  P   P  T+IFVNG W GIH+DP  LV+T+R LRRR +++
Sbjct: 241  SDPILYFLEEWGMEPLEEYLPHQNPDVTRIFVNGVWHGIHKDPAKLVETMRSLRRRGEIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDI--IALQQRESPE 655
             EV ++RDIR KE +I+TD GR  RPLF+VE+      + L +KK  +  +A  + E  E
Sbjct: 301  PEVSIIRDIREKEFKIFTDAGRVYRPLFVVEENAETGTKELALKKEHVERVAASEFEDAE 360

Query: 656  DGG-----WHDLVAKGFIEYIDTEEEETTMISMTINDL------------VQARLHPEEA 698
            + G     W+ L++ G +EY+D EEEET MI+M+  DL               R+ P  +
Sbjct: 361  ETGEEPFGWNALLSNGIVEYVDAEEEETIMIAMSHEDLDPNLYEDNENQDPNKRIKPTSS 420

Query: 699  -YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
              A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDT+
Sbjct: 421  KTAHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYSVRMDTM 480

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FR
Sbjct: 481  ANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 540

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLFFRSY D+EK++G  V E+F +P+RSNT+ ++HG+Y+KLDDDGL  PG RVSGED+II
Sbjct: 541  SLFFRSYMDQEKRVGMSVVEEFEKPNRSNTLRLKHGTYEKLDDDGLIAPGIRVSGEDIII 600

Query: 878  GKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKTTPI  D E  GQ + Y  +RD S  LR +E G+VDQVL+TTN +GL+FVKVR+R+ +
Sbjct: 601  GKTTPIPPDTEELGQRTVYHIKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRMRTTK 660

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            +PQIGDKF+SRHGQKGT+G+TY +EDMP++ EGI PD+I+NPHAIPSRMT+  LIEC++ 
Sbjct: 661  VPQIGDKFASRHGQKGTIGVTYRREDMPFSAEGIVPDLIINPHAIPSRMTVAHLIECLLS 720

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            KV++  G EGDA+PFT+VTVD ISK L   GY  RGFE MYNGHTG++  A
Sbjct: 721  KVSSISGMEGDASPFTEVTVDAISKLLRDNGYHSRGFEVMYNGHTGKKTMA 771


>gi|396941815|gb|AFN89625.1| RNA polymerase II, partial [Tetrapisispora phaffii]
          Length = 775

 Score = 1014 bits (2622), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/775 (62%), Positives = 602/775 (77%), Gaps = 33/775 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +E  FVIQ+++ ALD+IG+RG  +G+ ++KRI+YA++ILQKE LPH+   +  
Sbjct: 1    LEMLKPCVEAGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLLG LF+ LFRKLT+D+  
Sbjct: 61   ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
              PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N
Sbjct: 241  PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDIN 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-D 656
             EV ++RDIR +EL+I+TD GR  RPLFIV+       + L ++K  +  L   E  + +
Sbjct: 301  PEVSMIRDIREQELKIFTDAGRVYRPLFIVDDDDDLGHKELRVRKGHVARLMATEYQDIE 360

Query: 657  GG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA---------- 698
            GG        W  L+ +G +EYID EEEE+ +I+M   DL      PE            
Sbjct: 361  GGFEDVEEYTWTSLLNEGLVEYIDAEEEESILIAMQPEDLDPVSDEPEAIPDVETDTAKR 420

Query: 699  -----YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
                 +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  R
Sbjct: 421  IRAVHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVR 480

Query: 754  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
            MDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDR
Sbjct: 481  MDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDR 540

Query: 814  GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
            G FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HGSYDKLDDDGL  PG RVSGE
Sbjct: 541  GLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDGLISPGVRVSGE 600

Query: 874  DVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            D+IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN DGL+FVKVRV
Sbjct: 601  DIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRV 660

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            R+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIE
Sbjct: 661  RTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIE 720

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            C++ KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A
Sbjct: 721  CLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMA 775


>gi|396941787|gb|AFN89611.1| RNA polymerase II, partial [Starmera amethionina]
          Length = 770

 Score = 1014 bits (2622), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/774 (62%), Positives = 602/774 (77%), Gaps = 36/774 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EEAFVIQ+++VALDYIG+RG  +GV ++KRI+YAK+ILQKE LPH+   +  
Sbjct: 1    LEMLKPCVEEAFVIQDREVALDYIGRRGNALGVKKEKRIQYAKDILQKEFLPHITQKEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+LF+KLT+D+  
Sbjct: 61   ESRKAFFLGYMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+ V+   D NL+ A+KA TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQRSVETDTDFNLKLAVKASTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSGISVGTL 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI  FLEEWG E  E+ +P   P  T++FVNG W GIHRDP  L  T+++LRR  ++ 
Sbjct: 241  SDPIYYFLEEWGLEPLEDYTPHQNPDVTRVFVNGVWAGIHRDPATLTSTIKQLRRNGEIP 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK---------------QRLLIKKRDIIAL 648
             EV ++RDIR +E +I+TD GR  RPLFIVE+                RLL  + D +  
Sbjct: 301  AEVSIIRDIREQEFKIFTDAGRVYRPLFIVEEGQNGEKELAYTKAIANRLLETEYDSLGP 360

Query: 649  QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-------------VQARLHP 695
             +    E   W  L+  G +EYID EEEETTMI+M+I DL                R+ P
Sbjct: 361  DE----EPCTWETLLNGGVVEYIDAEEEETTMIAMSIEDLNPIDEYGNNEEPDPNKRIKP 416

Query: 696  E-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
              +  A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM
Sbjct: 417  SFKKSAHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRM 476

Query: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
            DT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG
Sbjct: 477  DTMANILYYPQKPLATTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRG 536

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
             FRSLFFRSY D+EK++G  V E+F +P+RSNT+  +HG+Y+KLDDDGL  PG RVSGED
Sbjct: 537  LFRSLFFRSYMDQEKRVGMSVVEEFEKPNRSNTLRXKHGTYEKLDDDGLIAPGVRVSGED 596

Query: 875  VIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
            +IIGKTTPI  D E  GQ + Y T+RD S  LR +E+G+VDQVL+TTN +GL+FVKVRVR
Sbjct: 597  IIIGKTTPIPPDVEELGQRTVYHTKRDASTPLRSTESGIVDQVLITTNQEGLKFVKVRVR 656

Query: 933  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
            + ++PQIGDKF+SRHGQKGT+G+TY +EDMP+  EGI PD+I+NPHAIPSRMT+  LIEC
Sbjct: 657  TTKVPQIGDKFASRHGQKGTIGITYRREDMPFNAEGIVPDLIINPHAIPSRMTVAHLIEC 716

Query: 993  IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            ++ KV++  G EGDA+PFTDVTVD ISK L + GYQ RGFE MY+GHTG++L A
Sbjct: 717  LLSKVSSLSGLEGDASPFTDVTVDAISKLLREHGYQSRGFEVMYHGHTGKKLMA 770


>gi|396941789|gb|AFN89612.1| RNA polymerase II, partial [Barnettozyma populi]
          Length = 775

 Score = 1014 bits (2621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/775 (62%), Positives = 600/775 (77%), Gaps = 41/775 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ+++VALDYIG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  
Sbjct: 1    LEMLKPCVEEGFVIQDREVALDYIGRRGNALGIRKEKRIQYAKDILQKEFLPHITQREGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPL+  LFR+LFRKLTRD+  
Sbjct: 61   ESRKAFFLGYMVNRLLLCALDRKEQDDRDHFGKKRLDLAGPLMTNLFRILFRKLTRDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+ V+ G D NL+ A+KA TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQRSVETGVDFNLKLAVKATTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTE 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            +  +LEFL+EWG E  EE  P   P  T+IFVNG W GIH DP  LV+T+R +RR+ D++
Sbjct: 241  SQEVLEFLDEWGIEPLEEYMPHQRPDVTRIFVNGVWHGIHDDPARLVETMRSMRRKGDLS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR------LLIKKRDIIALQQRESP--- 654
             E+ ++RDIR KEL+++TD GR  RPLFIV++        L +KK D+  L+  E     
Sbjct: 301  PEISIIRDIREKELKVFTDAGRVYRPLFIVDENHETNSKDLALKKEDVERLRDTEETIAE 360

Query: 655  ------------EDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
                        ED     GW  L+  G +EY+D EEEET MI+M+  DL       E+ 
Sbjct: 361  ISEKKRNNEFIDEDQTDLYGWESLLRSGIVEYVDAEEEETIMIAMSHEDLEPPNDEEEDV 420

Query: 699  Y-------------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 745
                          A TYTHCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+
Sbjct: 421  IDTNKRIKTAFHKSAHTYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGV 480

Query: 746  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 805
            Y+TNY +RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+I
Sbjct: 481  YLTNYSYRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMI 540

Query: 806  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 865
            MNQSSIDRG FRSLFFRSY D+EK++G  V E+F +P+RSNT+ ++HG+Y+KLDDDGL  
Sbjct: 541  MNQSSIDRGLFRSLFFRSYMDQEKRVGMSVVEEFEKPNRSNTLRLKHGTYEKLDDDGLIA 600

Query: 866  PGTRVSGEDVIIGKTTPISQD-EAQGQAS-RYTRRDHSISLRHSETGMVDQVLLTTNADG 923
            PG RVSGED+IIGKTTPI  D E  GQ +  +T+RD S  LR +E G+VDQVL+TTN +G
Sbjct: 601  PGIRVSGEDIIIGKTTPIPPDTEELGQRTVHHTKRDASTPLRSTENGIVDQVLITTNQEG 660

Query: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
            L+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSR
Sbjct: 661  LKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRREDMPFTAEGIVPDLIINPHAIPSR 720

Query: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1038
            MT+  LIEC++ KV++  G EGDA+PFTDVTVD IS+ L + GYQ RGFE MYNG
Sbjct: 721  MTVAHLIECLLSKVSSLSGHEGDASPFTDVTVDAISRLLREHGYQSRGFEVMYNG 775


>gi|396941949|gb|AFN89691.1| RNA polymerase II, partial [Galactomyces geotrichum]
          Length = 775

 Score = 1013 bits (2620), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/775 (61%), Positives = 604/775 (77%), Gaps = 33/775 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE F +Q+++VALDYIG+RG+  G+TR+KR++YA++ILQKE+LP++   +  
Sbjct: 1    LEMLKPCIEEGFFVQDREVALDYIGRRGSATGITREKRMRYARDILQKELLPNITQQEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY++HRLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLTRD+  
Sbjct: 61   ETRKAFFLGYMVHRLLLCALDRQDPDDRDHFGKKRLDLAGPLLAQLFRILFKKLTRDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  TRAGVSQVLNR T++S
Sbjct: 121  YMQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSTRAGVSQVLNRYTFSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+A+PRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            ++PI+ FLEEWG E  E+  P   P AT++FVNG WVG+HRDP ++V T+R LRRR D++
Sbjct: 241  SHPIVCFLEEWGMEPLEDYVPHASPNATRVFVNGVWVGVHRDPTLIVDTMRALRRRGDIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPED 656
             EV ++RDIR KE RI TD GR  RPLF+V+       +  L ++K D+  +   E   D
Sbjct: 301  PEVSIIRDIRSKEFRILTDAGRIYRPLFVVDNDPNSNTRGELKLRKEDVEKILNSEEGLD 360

Query: 657  GG-----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-----------------LH 694
             G     W  LV  G +EYID EEEET MI+MT  DL  +R                 + 
Sbjct: 361  NGEEPIGWSYLVNNGIVEYIDGEEEETVMIAMTPEDLETSRQMQFGVEVAEEVDTLQRVK 420

Query: 695  PEEA-YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
            P  A +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  R
Sbjct: 421  PLSALHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYSVR 480

Query: 754  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
            MDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDS+IMNQ SIDR
Sbjct: 481  MDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSMIMNQGSIDR 540

Query: 814  GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
            G FRSLFFRSY D+E+++G  V E+F +P R++T+ ++ G+YDKLD+DGL  PG RV+GE
Sbjct: 541  GLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKKGTYDKLDEDGLVTPGIRVTGE 600

Query: 874  DVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            D+IIGKT PIS D E  GQ ++ +T+RD S  LR +E GMVDQVLLTTN +GLRFVKVR+
Sbjct: 601  DIIIGKTAPISPDAEELGQRTKNHTKRDVSTPLRSTEHGMVDQVLLTTNQEGLRFVKVRM 660

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++  G+ PD+++NPHAIPSRMT+  LIE
Sbjct: 661  RTTKVPQIGDKFASRHGQKGTIGVTYRNEDMPFSALGVVPDLVINPHAIPSRMTVAHLIE 720

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            C++ KV+A  G EGDATPFTDVTV+ +SK L + G+  RGFE MY+GHTGR+L A
Sbjct: 721  CLLSKVSALSGLEGDATPFTDVTVEAVSKLLRENGFHSRGFEVMYHGHTGRKLMA 775


>gi|407045039|gb|EKE42974.1| DNA-directed RNA polymerase, beta subunit domain containing protein
            [Entamoeba nuttalli P19]
          Length = 1170

 Score = 1013 bits (2620), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/1188 (44%), Positives = 744/1188 (62%), Gaps = 53/1188 (4%)

Query: 21   EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 80
            ++I  E  W +I A+F+E GLV+QQL S++ FI+     I  ++  IEI   S       
Sbjct: 8    QQIQPEQFWYLIDAHFKENGLVKQQLSSYNNFIKKVRDVITSDTTKIEI---SNAEVLGI 64

Query: 81   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
            S   E  + I         P ++     +A+LFP  ARLR+LTY+  L V     + K G
Sbjct: 65   SANDEEEHTIVLTDPIFHFPKVSTGSKASASLFPHEARLRSLTYACQLEVKAKDIIRKNG 124

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN-SEKDLTELGECPYDQGGYFIINGSE 199
               EE+T      K+ I  +P ML+S  C L +  ++  +    EC ++QGGYFII GSE
Sbjct: 125  --AEEITTV---PKIDIASIPSMLKSDVCRLKRCVTQPSMISKDECSFEQGGYFIIKGSE 179

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
            KV+IAQEKM+ N V VF+     KY Y   + S+A   N    T  +RM      K    
Sbjct: 180  KVVIAQEKMAPNTVLVFEGSDQLKYPYEGNINSLAS--NDEVRTHKIRMDYPKLDKSRLK 237

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLE--EAFV 317
             +    +L  +  ++P++++F ALG+  D+ I+E IC+D  D +M  ++  +++  E   
Sbjct: 238  IKVPVLSLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTT 297

Query: 318  IQNQQVALDYIGKRGATVGVTR------DKRIKYAKEILQKEMLPHVGTGDFCETKKAYY 371
             ++ +  L    K+    GV         K  +   E L+K++LPH+GT +F    KA +
Sbjct: 298  TEDARRWLGEHSKKTNKEGVIEIVSENIQKLQRDGTEKLKKDLLPHIGTDNF--ESKAQF 355

Query: 372  FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 431
             GY+ +  L    G+R  DDRDH   KR+ + G L+  LF+   +++ +  RA +QK + 
Sbjct: 356  LGYMTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLS 415

Query: 432  NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 491
            + K +     +   TIT+    +L TGNW Q     +R GV+QVL+RLT+ S L++LR++
Sbjct: 416  SNKALEYAKPLSFPTITTDFTKALGTGNWPQPGGKESRHGVAQVLSRLTFTSALAYLRKI 475

Query: 492  NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 551
            +SP+  + K  KPRQLHN+QWG +CPAETPEG++CGLVK L+LM  ITV      + E  
Sbjct: 476  SSPVEGKRKTQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVALQDEQVDEIK 535

Query: 552  EEWGTE---NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRR---RVDVNTE 605
            E    +   N  + +   +   TK+F+NG W+     P+ L++ L+  R+   +  V   
Sbjct: 536  EALDCQYVCNINDCTGEKMNNITKVFLNGVWLKCSEQPQKLLEELKNYRKNSTKGKVKKV 595

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR----LLIKKRDIIALQQRESPEDGG--- 658
            + +V D   KELRIYTD GRC+RPLF V        L +K+  I  L  R   E  G   
Sbjct: 596  MSMVLDQLHKELRIYTDAGRCTRPLFTVSNNNGHYTLNLKQSQITELCSRLDNESNGTEK 655

Query: 659  ---WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILG 715
               W++ ++KG IEY+D +EEE +MI+M  +DL       E   +  YTHCEIHP+L++G
Sbjct: 656  TKFWNNFLSKGIIEYVDADEEEMSMIAMFPSDLDNT----EGGSSKNYTHCEIHPALVMG 711

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            V  SIIPFPDHNQSPRNTYQ AMGKQA+G+Y +NYQ R+D+L +VL+YPQKPLV+TRA E
Sbjct: 712  VLGSIIPFPDHNQSPRNTYQCAMGKQAIGVYASNYQLRLDSLGHVLFYPQKPLVSTRAAE 771

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
            ++ F  +PAGINAIVA+ CYSGYNQEDSV+MNQ SIDRG FRS+ F+++ ++ KK  T  
Sbjct: 772  YVKFGHIPAGINAIVAVCCYSGYNQEDSVMMNQGSIDRGLFRSMAFKTFSEDAKKSET-T 830

Query: 836  KEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR 894
            +  F +P  +N+      S Y+K+D DG+  PGT+V  +D+++             +   
Sbjct: 831  ELMFFKPSENNSEITEDISKYEKVDVDGILAPGTKVKPDDILVAGFY---------ENKN 881

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
             T +D S+  +  E G+VDQV++T    G ++++V++RS+RIPQIGDKFSSRHGQKGTVG
Sbjct: 882  KTLKDCSLRYKPRENGVVDQVVVTNAQSGTKYIRVKMRSIRIPQIGDKFSSRHGQKGTVG 941

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF-TDV 1013
            MTY QEDMP+T+EGI+PDII+NPHAIPSRMT+GQL+EC++GKV A +G     TPF  DV
Sbjct: 942  MTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLVECLLGKVGALVGDVQSGTPFQKDV 1001

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            TVD I + LHK  YQ RG+E +++GHTGR+L +++++GPTYYQRLKH+VDDK+H R  GP
Sbjct: 1002 TVDRIGERLHKLKYQRRGYEALFSGHTGRKLDSLVYIGPTYYQRLKHLVDDKVHGRATGP 1061

Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
               LTRQP EGRSRDGGLR GEMERDCMI+HG S  LKERLF  SD Y+++VC+ C + A
Sbjct: 1062 YATLTRQPLEGRSRDGGLRLGEMERDCMISHGVSSLLKERLFLASDKYQIYVCDKCHMPA 1121

Query: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
            +AN K  +F+C  CK+KT I +V IPYACKLLFQELM+MA+ PR+ T+
Sbjct: 1122 VANHKACTFQCSCCKDKTHISKVDIPYACKLLFQELMSMAVCPRIYTE 1169


>gi|56694314|gb|AAW22897.1| RNA polymerase II second largest subunit [Ceratozamia miqueliana]
          Length = 552

 Score = 1013 bits (2620), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/552 (88%), Positives = 507/552 (91%), Gaps = 10/552 (1%)

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALMVYITVGSAA PILEFLEEW TENFEEISPAVIP ATKIFVNGCWV
Sbjct: 1    PEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPNATKIFVNGCWV 60

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 640
            GIHRDPE+LVKTLR+LRR+VDVNTEVGVVRDIRL ELR+YTDYGRCSRPLFIVE  RLLI
Sbjct: 61   GIHRDPELLVKTLRQLRRQVDVNTEVGVVRDIRLSELRLYTDYGRCSRPLFIVEDXRLLI 120

Query: 641  KKRDIIALQQRESPEDG---------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            KK DI  LQQR+              GWH+LV KGFIEY+DTEEEETTMISMTI+DLV A
Sbjct: 121  KKPDIRRLQQRDQLPPPXPDDENTVRGWHELVTKGFIEYVDTEEEETTMISMTISDLVNA 180

Query: 692  RLHPEEAYADT-YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 750
            R  P  A +   YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY
Sbjct: 181  RNSPPTATSIVKYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 240

Query: 751  QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 810
            Q RMDTLAYVLYY  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS
Sbjct: 241  QLRMDTLAYVLYYXXKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 300

Query: 811  IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 870
             DRGFFRSLF+RSYRDEEK+MGTLVKE+FGRP+R NT GMRHGSY KLDDDGLAPPGTRV
Sbjct: 301  XDRGFFRSLFYRSYRDEEKRMGTLVKEEFGRPNRENTTGMRHGSYXKLDDDGLAPPGTRV 360

Query: 871  SGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 930
            SGEDVIIGKTTP++QDE+ GQA+RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVKVR
Sbjct: 361  SGEDVIIGKTTPVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVR 420

Query: 931  VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 990
            +RSVRIPQIGDKFSSRHGQKGTVGMTY QEDMPWTVEGITPDIIVNPHAIP RMTIGQLI
Sbjct: 421  MRSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPXRMTIGQLI 480

Query: 991  ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 1050
            ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFL
Sbjct: 481  ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFL 540

Query: 1051 GPTYYQRLKHMV 1062
            GPTYYQRLKHMV
Sbjct: 541  GPTYYQRLKHMV 552


>gi|396941823|gb|AFN89629.1| RNA polymerase II, partial [Saccharomyces cerevisiae]
          Length = 770

 Score = 1013 bits (2620), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/770 (62%), Positives = 600/770 (77%), Gaps = 31/770 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  
Sbjct: 1    LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LF+KLT+D+  
Sbjct: 61   ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+ V+   D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
              PI+ FL EWG E  E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N
Sbjct: 241  PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDIN 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-D 656
             EV ++RDIR KEL+I+TD GR  RPLFIVE       + L ++K  I  L   E  + +
Sbjct: 301  PEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIE 360

Query: 657  GG--------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE----------- 697
            GG        W  L+ +G +EYID EEEE+ +I+M   DL  A  + E            
Sbjct: 361  GGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIR 420

Query: 698  --AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
               +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMD
Sbjct: 421  VSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMD 480

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG 
Sbjct: 481  TMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGL 540

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLFFRSY D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSGEDV
Sbjct: 541  FRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDV 600

Query: 876  IIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            IIGKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN DGL+FVKVRVR+
Sbjct: 601  IIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRT 660

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC+
Sbjct: 661  TKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECL 720

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043
            + KVAA  G EGDA+PFTD+TV+ ISK L + GYQ  GFE MYNGHTG++
Sbjct: 721  LSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSXGFEVMYNGHTGKK 770


>gi|56694310|gb|AAW22895.1| RNA polymerase II second largest subunit [Polystichum lonchitis]
          Length = 527

 Score = 1013 bits (2618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/528 (90%), Positives = 500/528 (94%), Gaps = 1/528 (0%)

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALM YITVGSAA PILEFLEEW TENFEEISPAVIPQATKIFVNGCWV
Sbjct: 1    PEGQACGLVKNLALMSYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWV 60

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 640
            GIHRDPE+LV+TLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVEKQRLLI
Sbjct: 61   GIHRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLI 120

Query: 641  KKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYA 700
            KK DI ALQQ+ES E G W+DLV KGFIEY+DTEEEETTMISMTI DLV ARLHPEEAY+
Sbjct: 121  KKSDIRALQQKESAEPG-WYDLVTKGFIEYVDTEEEETTMISMTIQDLVNARLHPEEAYS 179

Query: 701  DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYV 760
            DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYV
Sbjct: 180  DTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYV 239

Query: 761  LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF 820
            LYYPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSSIDRGFFRS+F
Sbjct: 240  LYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFRSIF 299

Query: 821  FRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 880
            +RSYRDEEKK GTLVKE+F RP R NT GMRHGSY KLDDDGLAPPGTRVSGEDVIIGKT
Sbjct: 300  YRSYRDEEKKQGTLVKEEFERPIRENTQGMRHGSYGKLDDDGLAPPGTRVSGEDVIIGKT 359

Query: 881  TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 940
            TPI+QD+   QA RY++RD S  LRHSE+GMVDQVLLTTNADGLRFVK+RVRS+RIPQIG
Sbjct: 360  TPIAQDDTGTQAQRYSKRDQSTCLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIG 419

Query: 941  DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 1000
            DKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH
Sbjct: 420  DKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 479

Query: 1001 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 1048
            MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY GHTGRRL AMI
Sbjct: 480  MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYXGHTGRRLNAMI 527


>gi|396941891|gb|AFN89663.1| RNA polymerase II, partial [Millerozyma farinosa]
          Length = 782

 Score = 1013 bits (2618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/782 (61%), Positives = 602/782 (76%), Gaps = 42/782 (5%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  E
Sbjct: 2    EMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFE 60

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            T+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  Y
Sbjct: 61   TRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRLLFRKLTKDIYNY 120

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +Q+CV+N K+ N   A+K++TIT GL+YSLATGNWG Q  A   RAGVSQVLNR TY+ST
Sbjct: 121  MQRCVENDKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSST 180

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ +
Sbjct: 181  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPS 240

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PIL FLEEWG E  E+  P+  P+AT++FVNG WVG HR+P  LV+T+R LRRR D++ 
Sbjct: 241  EPILYFLEEWGMEPLEDYVPSNSPEATRVFVNGVWVGTHREPAHLVETMRNLRRRGDISP 300

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPE-- 655
            EV +VRDIR +E +I+TD GR  RPLFIV+       K  L +KK  +  L   E  E  
Sbjct: 301  EVSIVRDIREREFKIFTDAGRVYRPLFIVDDDSDSETKGELKLKKDHVNKLLNAEYDEFS 360

Query: 656  ------DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----------------- 692
                  +  W  L+  G +EY+D EEEET MI+MT  DL  +R                 
Sbjct: 361  DEPDTLNYSWSSLLNDGVVEYVDAEEEETIMIAMTPEDLEASRSSLSETQQKDLQLEEQE 420

Query: 693  ------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746
                  + P  + ++T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG++
Sbjct: 421  SDPAKRIKPTFSGSNTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVF 480

Query: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806
            +TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+IM
Sbjct: 481  LTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIM 540

Query: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 866
            NQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  P
Sbjct: 541  NQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAP 600

Query: 867  GTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGL 924
            G RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG 
Sbjct: 601  GVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGA 660

Query: 925  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 984
            +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ PD+I+NPHAIPSRM
Sbjct: 661  KFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVVPDLIINPHAIPSRM 720

Query: 985  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            T+  LIEC++ KV++  G EGDA+PFTDVTV+ +SK L + GYQ RGFE MYNGHTG++L
Sbjct: 721  TVAHLIECLLSKVSSLSGLEGDASPFTDVTVEAVSKLLREHGYQSRGFEVMYNGHTGKKL 780

Query: 1045 TA 1046
             A
Sbjct: 781  MA 782


>gi|396941855|gb|AFN89645.1| RNA polymerase II, partial [Aciculoconidium aculeatum]
          Length = 763

 Score = 1012 bits (2617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/764 (62%), Positives = 596/764 (78%), Gaps = 25/764 (3%)

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  ET
Sbjct: 1    MLKPCVEEGFVIQEREVALDFIGRRGV-MGIRREKRIQYAKDILQKELLPNITQEEGFET 59

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  Y+
Sbjct: 60   RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYM 119

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            Q+CV+N K+ NL  A+K++T+T GL+YSLATGNWG Q  A   RAGVSQVLNR TY+STL
Sbjct: 120  QRCVENDKEFNLTLAVKSQTVTDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTL 179

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+A+ 
Sbjct: 180  SHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTASE 239

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR DV+ E
Sbjct: 240  PILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAQLVDTMRNLRRRGDVSPE 299

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDI---------IALQQRESPED 656
            V ++RDIR KE +I+TD GR  RPLF+V+     I K DI         +   + +  E+
Sbjct: 300  VSIIRDIREKEFKIFTDAGRVYRPLFVVDDDIESITKGDIKLEKEQVNKLLNSEYDEYEE 359

Query: 657  GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA------------RLHPEEAYADTYT 704
              W  LV +G IEY+D EEEET MI+MT  DL               R+ P  + + T+T
Sbjct: 360  YTWSSLVGEGVIEYVDAEEEETIMIAMTPEDLEATKSEIKTEIDPAKRIKPVFSSSSTFT 419

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYP
Sbjct: 420  HCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYAVRMDTMANILYYP 479

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPL TTRAMEHL FR+LPAG NA+VAI+CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY
Sbjct: 480  QKPLATTRAMEHLKFRELPAGQNAVVAISCYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY 539

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
             D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  PG RVSGED+IIGKTTPI 
Sbjct: 540  MDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIP 599

Query: 885  QD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 942
             D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +FVK R+R+  IPQIGDK
Sbjct: 600  PDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKXRMRTTXIPQIGDK 659

Query: 943  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
            F+SRHGQKGT+G+TY  EDMP++ +GI PD+I+NPHAIPSRMT+  LIEC++ KV++  G
Sbjct: 660  FASRHGQKGTIGVTYRHEDMPFSSQGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSG 719

Query: 1003 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
             EGDA+PFTDVT + ISK L + GYQ RGFE MYNGHTG++L A
Sbjct: 720  LEGDASPFTDVTAEAISKLLREHGYQSRGFEVMYNGHTGKKLMA 763


>gi|83415497|gb|ABC17956.1| RNA polymerase II second largest subunit, partial [Rozella allomycis]
          Length = 697

 Score = 1012 bits (2617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/699 (67%), Positives = 575/699 (82%), Gaps = 6/699 (0%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KR+DLAGPLL GLFRMLFRKLT+DV  Y+QKC+D+ +D NL  A+K+ TIT+GL+YS+AT
Sbjct: 2    KRMDLAGPLLAGLFRMLFRKLTKDVGKYLQKCIDSNRDFNLTLAVKSNTITNGLRYSIAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A  +RAGVSQVLNR TYASTLSHLRR+N+PIGR+GKLAKPRQLHNS WGM+C
Sbjct: 62   GNWGDQKKAMESRAGVSQVLNRYTYASTLSHLRRVNTPIGRDGKLAKPRQLHNSHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNL+LM YI+VG++  PI++ L+ +  E   EISP+ I   TKIF+N
Sbjct: 122  PAETPEGQACGLVKNLSLMSYISVGTSPAPIIDALKIYQMEYLAEISPSSIGNLTKIFMN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+H DP+ LV  L++ RR   ++ E  VV D+R KE+RI TD GRC RPLF+VE Q
Sbjct: 182  GNWIGVHSDPKRLVNDLKKFRRECAISFETSVVFDVREKEVRILTDAGRCCRPLFVVENQ 241

Query: 637  RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE 696
             + +K+  +  LQQR+     GW +L+  G +EY+D EEEET+MI MT  DL++A+   +
Sbjct: 242  TIQLKEDQLSQLQQRDI-TGFGWQNLLENGVVEYLDVEEEETSMICMTPEDLLEAKNITD 300

Query: 697  EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 756
              +   YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI  TN+Q RMDT
Sbjct: 301  --FPTKYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGINSTNFQRRMDT 358

Query: 757  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 816
            L  +L+YPQKPLVTTR+ME+LHFR+LPAG NAIVAIACYSGYNQEDSVIMNQS+IDRG F
Sbjct: 359  LNNILFYPQKPLVTTRSMEYLHFRELPAGQNAIVAIACYSGYNQEDSVIMNQSAIDRGLF 418

Query: 817  RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 876
            RS+ +++Y DEEKK+GTL  E+F +P  + T+ MRHG+YDKL+DDGL  PG ++SGED+I
Sbjct: 419  RSICYKTYTDEEKKVGTLQVEEFMKPTFTTTVRMRHGTYDKLEDDGLVAPGIKISGEDII 478

Query: 877  IGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 934
            IGKT PI    DE   + S +TRRD S  L+ +E G++DQV+++TNADG RFVK+RV SV
Sbjct: 479  IGKTVPIPDDSDELGQRTSTHTRRDASTPLKSNEHGIIDQVMISTNADGYRFVKIRVSSV 538

Query: 935  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 994
            R+PQ+GDKF+SRHGQKGTVG+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++
Sbjct: 539  RVPQMGDKFASRHGQKGTVGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLL 598

Query: 995  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1054
            GKV+A  G EGDATPFTDVTV++IS+ L KCGYQ RGFE +YNGH+GR+L A IF+GPTY
Sbjct: 599  GKVSAITGDEGDATPFTDVTVESISETLLKCGYQSRGFEVLYNGHSGRKLNAQIFIGPTY 658

Query: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            YQRLKHMVDDKIH+R RGPVQILTRQP EGRSRDGGLRF
Sbjct: 659  YQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRF 697


>gi|396941887|gb|AFN89661.1| RNA polymerase II, partial [Scheffersomyces stipitis]
          Length = 783

 Score = 1012 bits (2617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/784 (61%), Positives = 603/784 (76%), Gaps = 43/784 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  
Sbjct: 1    LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  
Sbjct: 60   ESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 120  YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 180  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HRDP  LV T+R LRRR D++
Sbjct: 240  SEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHRDPANLVDTMRSLRRRGDIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIAL-----QQR 651
             EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +  L      + 
Sbjct: 300  PEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDEAESETKGDLKLQKEHVHNLLSSEYDEY 359

Query: 652  ESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQA---------------- 691
            E P++ G    W  L+  G +EY+D EEEET MI+MT  DL  +                
Sbjct: 360  EDPDNEGASYTWSSLINDGVVEYVDAEEEETIMIAMTPEDLEASKNAITETPDKSVLEEQ 419

Query: 692  ------RLHPE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
                  R+ P   A   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 420  ELDPAKRIKPTFSAATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 479

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            +++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDSV
Sbjct: 480  VFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSV 539

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL 
Sbjct: 540  IMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLI 599

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 922
             PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN D
Sbjct: 600  APGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGD 659

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            G +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPS
Sbjct: 660  GAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLIINPHAIPS 719

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MYNGHTG+
Sbjct: 720  RMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYNGHTGK 779

Query: 1043 RLTA 1046
            +L A
Sbjct: 780  KLMA 783


>gi|396941833|gb|AFN89634.1| RNA polymerase II, partial [Lachancea thermotolerans]
          Length = 773

 Score = 1011 bits (2615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/774 (62%), Positives = 606/774 (78%), Gaps = 34/774 (4%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EE FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  E
Sbjct: 1    EMLKPCVEEGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFE 60

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            ++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LFRKLTRD+  +
Sbjct: 61   SRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRF 120

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +Q+ V+  KD NL+ A+KA TIT+GLKY+LATGNWG Q  A  +RAGVSQVLNR TY+ST
Sbjct: 121  MQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSST 180

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+  
Sbjct: 181  LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDP 240

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV T+R+LRR+ DV +
Sbjct: 241  LPIITFLNEWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDVTS 300

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-DG 657
            EV +VRDIR KEL+I+TD GR  RPLFIV++      + L ++K  I  L   E  + +G
Sbjct: 301  EVSIVRDIREKELKIFTDAGRVYRPLFIVDENEETGVKELKLRKGHIRKLMMTEYQDIEG 360

Query: 658  G---------WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQARLHPEEA------- 698
            G         W  L+ +G +EYID EEEET +I+M   DL   ++A   PEE        
Sbjct: 361  GFEEEDINYTWSSLLNEGLVEYIDAEEEETILIAMQHEDLDPTIEA-ADPEEELDPAKRI 419

Query: 699  ----YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
                ++ T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM
Sbjct: 420  KAIHHSSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRM 479

Query: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
            DT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG
Sbjct: 480  DTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRG 539

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
             FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSG+D
Sbjct: 540  LFRSLFFRSYMDQEKRIGMSITESFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDD 599

Query: 875  VIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
            +IIGKTTPI  D E  GQ + + ++RD S  LR +E G+VDQVL+TTN +GL+FVKVRVR
Sbjct: 600  MIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVR 659

Query: 933  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
            + ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHAIPSRMT+  LIEC
Sbjct: 660  TTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIEC 719

Query: 993  IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            ++ KVAA  G EGDA+PFTD+TVD IS+ L + GYQ RGFE MYNGHTG++L A
Sbjct: 720  LLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMA 773


>gi|45545325|gb|AAS67510.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Dermatocarpon reticulatum]
          Length = 907

 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/909 (55%), Positives = 644/909 (70%), Gaps = 48/909 (5%)

Query: 198  SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
            SEKVLIAQE+ + N V VFKK  P+ + ++AE+RS  +  +R  S   V++  +      
Sbjct: 1    SEKVLIAQERSAGNIVQVFKKAAPSPFTHIAEIRSSVDRGSRMLSQCTVKLYRQVDGPEQ 60

Query: 258  SS-GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
            +     IR  LPY++ +IP+++VFRAL  V+D DILE IC+D  D +MM+LL  SL+E  
Sbjct: 61   TKIPNPIRIQLPYVKQDIPLVVVFRALDIVSDADILEKICFDQSDKEMMDLLMGSLQEGQ 120

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVG--TGDFCETKKAYYFGY 374
             IQ+   A DYI +RG    +   +R K+  +ILQKE LPH+G    +  +++KA++ GY
Sbjct: 121  PIQSADTARDYIARRGNNPNLKFAERQKHTTDILQKEFLPHIGQEPSNSSQSRKAFFLGY 180

Query: 375  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
            +++R+L CALGR   DDRDH G KRLDLAGPL+  LFR+ F+K+ RD   Y+QK V++ +
Sbjct: 181  MVNRMLKCALGRSEPDDRDHLGKKRLDLAGPLMANLFRLQFQKVVRDFSRYMQKQVESDR 240

Query: 435  DVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
            ++NL+  +K+  IT+GLKYSLATGNWG Q      +AGVSQVL+R T+ASTLSHLRR N+
Sbjct: 241  EINLKVGLKSNIITNGLKYSLATGNWGDQKKVNQAKAGVSQVLSRYTFASTLSHLRRTNA 300

Query: 494  PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 553
            PIGR+GK+AKPRQLHN+ WG +CPAETPEGQACGLVKNLALM  +T      P+++++ E
Sbjct: 301  PIGRDGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLALMTMVTNSHNTEPLVDYILE 360

Query: 554  WGTENFEEISPAVIPQATKIFVNGCWVGIH-RDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
               E+ EE  P + PQATK+F+NG W  +  +DP+ LV   + LRR   ++ ++ +V DI
Sbjct: 361  QDVESLEEWEPRLSPQATKVFLNGVWFAVVIKDPKHLVNRFKELRRTDQLDPQISIVWDI 420

Query: 613  RLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIAL--------------QQR 651
            R KE RI  D GR  RPLF+VE+         L++ K  I  L              Q +
Sbjct: 421  RDKEFRISGDAGRIIRPLFVVERDPSKDNEGNLVLNKNHIQRLDNTVYYTEAQRPIEQWQ 480

Query: 652  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ-----------------ARLH 694
            E P   GW DL+ +G +EY+D EEEET MI MT  DL                   AR  
Sbjct: 481  EPP--FGWKDLLKEGVVEYLDAEEEETAMIIMTPEDLNTSNAKHMGRTTEETDDPLARYD 538

Query: 695  PE-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
            P    +A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  R
Sbjct: 539  PLLNPHAHTFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQR 598

Query: 754  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
            M+T+A +LYYPQKPL  T +ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDR
Sbjct: 599  METMANILYYPQKPLARTMSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDR 658

Query: 814  GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
            G FRSLF+R+Y+D+EK +G  V E F +P RS+T+ M+HG+YDK+D DG+   G RVSGE
Sbjct: 659  GLFRSLFYRTYQDQEKVVGHNVVEQFEKPTRSDTLRMKHGTYDKIDADGIVEVGQRVSGE 718

Query: 874  DVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            D+IIGKT P++ D E  GQ  + + +RD S  LR +E+G+VDQVL+TT+ DG +FVKVRV
Sbjct: 719  DIIIGKTAPMAPDAEELGQRQKQHLKRDVSTPLRSTESGIVDQVLVTTSGDGQKFVKVRV 778

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIE
Sbjct: 779  RTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIE 838

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLG 1051
            C + KVA   G EGDATPFT VTV N+S  L   GYQ RGFE MYNGHTGR+L A +FLG
Sbjct: 839  CQLSKVATLRGDEGDATPFTKVTVTNVSNILRSMGYQSRGFEVMYNGHTGRKLVAQVFLG 898

Query: 1052 PTYYQRLKH 1060
            PTYYQRL+H
Sbjct: 899  PTYYQRLRH 907


>gi|56694358|gb|AAW22919.1| RNA polymerase II second largest subunit [Metasequoia
            glyptostroboides]
          Length = 533

 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/536 (88%), Positives = 508/536 (94%), Gaps = 3/536 (0%)

Query: 532  LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVK 591
            LALMVYITVGS+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+
Sbjct: 1    LALMVYITVGSSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVR 60

Query: 592  TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQR 651
            TLR+LRR+VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+V+ QRL I+K DI  LQ  
Sbjct: 61   TLRQLRRQVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVDNQRLKIRKVDINNLQ-- 118

Query: 652  ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPS 711
             S EDG WH+LV +G IEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPS
Sbjct: 119  ASREDG-WHELVTQGCIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPS 177

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTT
Sbjct: 178  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTT 237

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            RAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+ 
Sbjct: 238  RAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRA 297

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 891
            GTLVKE+FGRP+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++ GQ
Sbjct: 298  GTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSAGQ 357

Query: 892  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
             S+YT+RD S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKG
Sbjct: 358  VSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKG 417

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT
Sbjct: 418  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 477

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            DVTVD+ISKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 478  DVTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIH 533


>gi|396941895|gb|AFN89665.1| RNA polymerase II, partial [Yamadazyma philogaea]
          Length = 782

 Score = 1011 bits (2613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/783 (61%), Positives = 600/783 (76%), Gaps = 43/783 (5%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EE FVIQ Q+VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +   
Sbjct: 1    EMLKPCVEEGFVIQEQEVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFA 59

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            T+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLTRD+  Y
Sbjct: 60   TRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTRDIYNY 119

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+ST
Sbjct: 120  MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+++
Sbjct: 180  LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTSS 239

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PIL FLEEWG E  E+ SP+  P +T++FVNG WVG HRDP  LV T+R LRR+ D+  
Sbjct: 240  EPILVFLEEWGLEPLEDYSPSTSPDSTRVFVNGVWVGTHRDPASLVDTIRSLRRKGDIAP 299

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRE----- 652
            EV ++RD+R +E +I+TD GR  RPLFIV+       K  L++ K  I  L   E     
Sbjct: 300  EVSIIRDVREREFKIFTDAGRVYRPLFIVDDNPYSETKGELMLNKTHIKKLMDSEYDEFS 359

Query: 653  ---SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV----------QARLHPEEAY 699
                 E  GW  LV +G IEY+D EEEET MI+MT  DL           Q  +  EE  
Sbjct: 360  YDDEQEAYGWSSLVNEGVIEYVDAEEEETIMIAMTPEDLEASKSTLSETEQKSMQMEEQE 419

Query: 700  AD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 745
             D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+
Sbjct: 420  RDPAKRIKPTYTGSLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGV 479

Query: 746  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 805
            ++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+I
Sbjct: 480  FLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMI 539

Query: 806  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 865
            MNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  
Sbjct: 540  MNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIT 599

Query: 866  PGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADG 923
            PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG
Sbjct: 600  PGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDG 659

Query: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
             +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPSR
Sbjct: 660  AKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGIVPDLIINPHAIPSR 719

Query: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043
            MT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGFE MY+GHTG++
Sbjct: 720  MTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEEISKLLREHGYQSRGFEVMYHGHTGKK 779

Query: 1044 LTA 1046
            + A
Sbjct: 780  MMA 782


>gi|396941899|gb|AFN89667.1| RNA polymerase II, partial [Yamadazyma scolyti]
          Length = 783

 Score = 1011 bits (2613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/784 (62%), Positives = 596/784 (76%), Gaps = 43/784 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ Q+VALD+IG+RG  +G+ R+KRI+Y K+ILQKE+LP++   +  
Sbjct: 1    LEMLKPCVEEGFVIQEQEVALDFIGRRGV-LGIRREKRIQYXKDILQKELLPNITQEEGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
             T+KA++ G +++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLTRD+  
Sbjct: 60   ATRKAFFLGXMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTRDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+N K  NL  A+K++TIT GL+YS ATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 120  YMQRCVENDKVFNLTLAVKSQTITDGLRYSXATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS+
Sbjct: 180  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSS 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PIL FLEEWG E  E+ SPA  P  T++FVNG WVG HRDP  LV T+R LRR+ D++
Sbjct: 240  SEPILVFLEEWGLEPLEDYSPATSPDTTRVFVNGVWVGTHRDPASLVDTIRSLRRKGDIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRE---- 652
             EV ++RDIR KE +I+TD GR  RPLFIV+       K  LL+ K  I  L   E    
Sbjct: 300  PEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNPSSETKGELLLNKTHIKKLMDSEYDDY 359

Query: 653  ----SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPEEA 698
                  E  GW  LV  G IEY+D EEEET MI+MT  DL           Q  +  EE 
Sbjct: 360  NYDDEQETYGWSSLVRDGIIEYVDAEEEETIMIAMTPEDLEASKSSLSETQQKTIQMEEQ 419

Query: 699  YAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
              D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 420  ERDPAKRIKPTYSGNLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 479

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            +++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 480  VFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 539

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL 
Sbjct: 540  IMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLI 599

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 922
             PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN D
Sbjct: 600  TPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGD 659

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            G +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPS
Sbjct: 660  GAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGIVPDLIINPHAIPS 719

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGFE MYNGHTG+
Sbjct: 720  RMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEEISKLLREHGYQSRGFEVMYNGHTGK 779

Query: 1043 RLTA 1046
            +L A
Sbjct: 780  KLMA 783


>gi|407404199|gb|EKF29761.1| DNA-directed RNA polymerase III subunit, putative, partial
            [Trypanosoma cruzi marinkellei]
          Length = 1194

 Score = 1010 bits (2612), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1174 (45%), Positives = 762/1174 (64%), Gaps = 38/1174 (3%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            +I  ED W +IS++F EKGLV QQ+DS+++F+   +  +     +I  R + Q  PG Q+
Sbjct: 41   DIDSEDIWEIISSFFREKGLVHQQIDSYNDFLLR-IPRMARSLLEIVPRQDEQFEPGTQT 99

Query: 82   DFAETIYKISFGQIYLSKP---MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
            +     Y++S   + +  P       S  E   LFP   RLR+LTY A   V +  RV +
Sbjct: 100  ETEPDQYRLSLEDVVIGNPSHEFSGFSRHEMHPLFPNECRLRDLTYDANAQVTLGIRVYR 159

Query: 139  KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
               +    T  Q+     +G++PIML+S  C L    E +L  L ECP+DQGGYF+I+G+
Sbjct: 160  SREEQPYRTFLQNME---LGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVISGT 216

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKVLIAQE+ + NHVY F +++      + E++S+ E     P T+ + M  +    G  
Sbjct: 217  EKVLIAQERQAANHVYAFSRQK----GLLCEIKSIVEGSLNKPRTLQILMPYKKKGPGHG 272

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
              + +   +  +   IP+ ++FRAL   +DK+IL+ +  D +D  M+E+LR S+E+A  +
Sbjct: 273  Y-ENLLCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTL 331

Query: 319  Q--NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            Q   +  AL +IGKR      +R+   + A+ +L +++LPH+G     +  K  + GY++
Sbjct: 332  QIFTRDEALWFIGKRLGKQD-SRENLQREAQALLMRDLLPHMGVDCAADRGKCLFIGYMV 390

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN-GKD 435
            HRLLL ALGRR + DRD  G+KR+D+AG LL         ++ +++   V     N G  
Sbjct: 391  HRLLLLALGRREDTDRDFLGHKRIDVAGALLTFQLNQFLVQVRKEMIKTVHDYSTNRGGV 450

Query: 436  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            V     + ++ IT GL+  LATGN+G   +   + GV+Q LNRLTY+S+LS+LRR+ +PI
Sbjct: 451  VGFGRILHSRLITDGLRRCLATGNFGDMKSGNIKTGVAQTLNRLTYSSSLSNLRRIQNPI 510

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
                K  KPR LH +QWG +CP ETPEG + GL+KNLALM  I+ GS    +++ ++   
Sbjct: 511  SASSKATKPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGSDHTGVVQAVQARI 570

Query: 556  TENFEEIS-PAVIP-QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIR 613
            T  F  I  P +   +  ++FVNG  +G+HRDPE L++ LR  RR  +++ EV +VRDIR
Sbjct: 571  T-GFHSIDLPGLADVRVARVFVNGTLIGVHRDPERLLRELRARRRGGELSNEVSIVRDIR 629

Query: 614  LKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG----GWHDLVAKGFIE 669
             +E+R+++D GRC RPLF+VE+ R+ ++K  I  L +      G     W+ ++ KG++E
Sbjct: 630  DREIRVFSDGGRCLRPLFVVERSRIKLQKTGIGELLEPSKTPGGKREISWNRVIKKGYVE 689

Query: 670  YIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 729
             ID EEE++ +I+MT  ++ +            Y+HCE+ PS+ILG+CASIIP+P+HNQS
Sbjct: 690  LIDCEEEDSLLIAMTTTEVSKNYY---------YSHCEMDPSMILGICASIIPYPNHNQS 740

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGIY +N+  RMDT A+VL+YPQKPLV T+AM ++    LPAG NA+
Sbjct: 741  PRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAMSYMRSNDLPAGHNAV 800

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAIACYSGYNQEDS+IM++S+++RGFFRS F+RSY+  E++    V+E F  PD  N   
Sbjct: 801  VAIACYSGYNQEDSIIMSRSAVERGFFRSAFWRSYKATEERKKD-VRETFENPD-PNICR 858

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI---SQDEAQGQASRYTRRDHSISLRH 906
            ++   Y KLD DGL  PG  V G D+++GKT PI   +Q+    +  R  +R+ SI+ R 
Sbjct: 859  VKRADYTKLDTDGLIKPGMPVMGGDILVGKTIPIPEAAQENTAMKNKRLLKRECSIASRT 918

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            SE G+V++V+LT N +G RF KV+VR+++IP IGDKF SRHGQKGT G+ + QEDMP+  
Sbjct: 919  SEKGVVEKVMLTEN-NGNRFTKVKVRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNR 977

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            +GI PD+I+NPHA+PSRMT+  LIE + GKVA + G E  ATPF  V V++  KALH+  
Sbjct: 978  DGIVPDLIINPHAVPSRMTVAHLIETLAGKVACYKGSEVYATPFCSVVVEDFGKALHQLK 1037

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            +Q  G E +YNGHTG  L  +IF GPTYYQRLKH+  DKIH+R RGP+Q L RQP EGR+
Sbjct: 1038 FQRYGNECLYNGHTGSPLDHLIFFGPTYYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRA 1097

Query: 1087 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1146
             +GGLRFGEMERDCM+++GAS +L+ERLF  SD Y VHVC  CG I  A+ ++N ++C+G
Sbjct: 1098 HEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNICGTICAADTEQNVYKCQG 1157

Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            C N T I Q  +PYACKLLFQELM+MAI PR+ T
Sbjct: 1158 CDNDTRISQTLMPYACKLLFQELMSMAILPRLGT 1191


>gi|396941851|gb|AFN89643.1| RNA polymerase II, partial [Dekkera bruxellensis]
          Length = 785

 Score = 1010 bits (2612), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/785 (61%), Positives = 603/785 (76%), Gaps = 43/785 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            ME+L+P +EE F+IQ+Q+VALD+IG+RG  VG+ RD+RI++AK+ILQ+E LPH+      
Sbjct: 1    MEMLKPCIEEGFLIQSQEVALDFIGRRGNAVGIKRDRRIQFAKDILQREFLPHISQDSGY 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET KAY+ GYI++RLLLCAL RR  DDRDH+G KRLDLAGPLL  LFR+LFRKL++D+  
Sbjct: 61   ETNKAYFLGYIVNRLLLCALERREPDDRDHFGKKRLDLAGPLLANLFRILFRKLSKDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+C++ G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TYAS
Sbjct: 121  YMQRCIERGEDXNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYAS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG++
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMAGISVGTS 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI   LEEWG E   +  P     AT++F+NG WVG HRDP MLV T+R+LRR   ++
Sbjct: 241  SEPISYLLEEWGLEPLSDYDPQEHKNATRVFLNGNWVGTHRDPGMLVDTMRQLRRSGTIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRE---- 652
             EV +VRDIR +E +I+TD GR  RPLFIV+       K  L I K D+  ++ RE    
Sbjct: 301  PEVSLVRDIREREFKIFTDAGRVYRPLFIVDNDPDSPRKGNLKITKDDVRKIRDREVEEI 360

Query: 653  SPE-----DG----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLV-------- 689
            +PE     DG          GW  LV  G +EY+D EEEETT+I+M+  DL+        
Sbjct: 361  APEEDVDEDGNPAEPIRRVYGWDSLVTNGMVEYLDAEEEETTLIAMSPEDLLPMSKQDQR 420

Query: 690  -QARLHPEEAY-----ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
             +  L P +       + ++THCEIHP++ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 421  REVELDPAKRIKTHINSHSFTHCEIHPAMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 480

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+Y+TNY  RMDT++ +LYYPQKPL  T++ME L FR+LPAG N IVAIACYSGYNQEDS
Sbjct: 481  GVYLTNYNVRMDTMSNILYYPQKPLAKTQSMEFLKFRELPAGQNCIVAIACYSGYNQEDS 540

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            VIMNQSSIDRG FRSLFFR+Y D+E++ G  + E+F +P+RSNT+G + G+Y+KLDDDGL
Sbjct: 541  VIMNQSSIDRGLFRSLFFRTYMDQERRNGISIVEEFEKPNRSNTLGFKVGTYEKLDDDGL 600

Query: 864  APPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+G+VDQV+LTTNA
Sbjct: 601  VAPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYXTKRDASTPLRSAESGIVDQVMLTTNA 660

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+GMTY  EDMP+T EGI PDII+NPH IP
Sbjct: 661  EGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGMTYRHEDMPFTAEGIVPDIIINPHCIP 720

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMT+  L+EC++ KVAA  G EGDATPFTD+TVD +SK L + GYQ RGFE MYNGHTG
Sbjct: 721  SRMTVAHLVECLLSKVAALRGYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVMYNGHTG 780

Query: 1042 RRLTA 1046
            ++L A
Sbjct: 781  KKLMA 785


>gi|56694340|gb|AAW22910.1| RNA polymerase II second largest subunit [Saxegothaea conspicua]
          Length = 526

 Score = 1010 bits (2612), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/529 (89%), Positives = 504/529 (95%), Gaps = 3/529 (0%)

Query: 539  TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRR 598
            TVGS+  PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDPE+LV+TLR+LRR
Sbjct: 1    TVGSSPNPILEFLEEWSTENFEEISPAVIPTATKIFVNGCWVGIHRDPELLVRTLRQLRR 60

Query: 599  RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG 658
            +VDVN EVGVVRDIRL+ELR+YTDYGRCSRPLF+V+KQRL+IKKRDI  L Q  +PEDG 
Sbjct: 61   QVDVNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVKKQRLIIKKRDINELWQ--NPEDG- 117

Query: 659  WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCA 718
            WHDL+ KGFIEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSLILGVCA
Sbjct: 118  WHDLITKGFIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLILGVCA 177

Query: 719  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 778
            SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMD LAYVLYYPQKPLVTTRAMEHLH
Sbjct: 178  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDXLAYVLYYPQKPLVTTRAMEHLH 237

Query: 779  FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 838
            FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+
Sbjct: 238  FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEE 297

Query: 839  FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRR 898
            FGRP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQ+E+  Q S+YTRR
Sbjct: 298  FGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVSQEESGNQISKYTRR 357

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYT
Sbjct: 358  DQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYT 417

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
            QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+I
Sbjct: 418  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSI 477

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            SKALHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 478  SKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIH 526


>gi|396941955|gb|AFN89694.1| RNA polymerase II, partial [Dipodascopsis anomala]
          Length = 765

 Score = 1010 bits (2611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/765 (61%), Positives = 601/765 (78%), Gaps = 31/765 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EEAFVIQ+++VALD+IG+RG  +G+ ++KR++YA++I+Q+E+LPH+   +  
Sbjct: 1    VEMLKPCIEEAFVIQDREVALDFIGRRGTAMGINKEKRLRYARDIMQRELLPHITQSEGY 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY++H++L CAL RR  DDRDH+G KRLDLAGPLL  LFR+LFRKLTRDV  
Sbjct: 61   ETRKAFFLGYMVHKMLQCALERREVDDRDHFGKKRLDLAGPLLANLFRVLFRKLTRDVYK 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  +D NL  A+K  TIT+GL+YSLATGNWG Q  A  +RAGVSQVLNR T++S
Sbjct: 121  YMQKCVETNRDFNLTLAVKPNTITNGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTFSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI+ FLEEWG E  E+  P   P A ++FVNG W+G+HRDP  L +T+R LRRR +++
Sbjct: 241  SQPIIFFLEEWGMEPLEDYVPHASPNAARVFVNGVWIGVHRDPAQLTQTIRSLRRRANIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIAL-QQRESPE 655
             EV +VRDIR KE +I+TD GR  RPLF+V+       K  L++KK  +  L    ES E
Sbjct: 301  PEVSIVRDIREKEFKIFTDAGRVYRPLFVVDDDENSIRKGELMLKKEHVNKLIDDFESSE 360

Query: 656  DG--GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLHPEE----------- 697
            +   GW+ LVA G +EYID EEEET MI+MT  DL     +QA +   E           
Sbjct: 361  EDKYGWNSLVADGIVEYIDAEEEETVMIAMTPEDLETSRQIQAGIETTENLDPSHRVKAV 420

Query: 698  --AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
              ++A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMD
Sbjct: 421  STSHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYGVRMD 480

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL TTR+ME++ FR+LPAG NAIVAI CYSGYNQEDSVIMNQ+SIDRG 
Sbjct: 481  TMANILYYPQKPLATTRSMEYMKFRELPAGQNAIVAILCYSGYNQEDSVIMNQNSIDRGL 540

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLFFRSY D+EK++G  V E+F +P + NT+ M+HG+YDKLDDDGL  PG RVSGED+
Sbjct: 541  FRSLFFRSYMDQEKRVGMSVVEEFEKPIKGNTLRMKHGTYDKLDDDGLIAPGVRVSGEDI 600

Query: 876  IIGKTTPI-SQDEAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            IIGKT PI  + E  GQ +++ T+RD S  LR +E+G+VDQVLLTTN +GLRFVK+R+R+
Sbjct: 601  IIGKTAPIPPETEELGQRTQFHTKRDVSTPLRSTESGIVDQVLLTTNGEGLRFVKIRMRT 660

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPHAIPSRMT+  LIEC+
Sbjct: 661  TKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTSEGVVPDLIINPHAIPSRMTVAHLIECL 720

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1038
            + KV++  G EGDATPFTDVTVD +S+ L + GY  RGFE M NG
Sbjct: 721  LSKVSSLSGLEGDATPFTDVTVDAVSRLLREHGYHSRGFEVMXNG 765


>gi|396941883|gb|AFN89659.1| RNA polymerase II, partial [Schwanniomyces occidentalis]
          Length = 776

 Score = 1010 bits (2611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/777 (62%), Positives = 599/777 (77%), Gaps = 36/777 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  
Sbjct: 1    LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  
Sbjct: 60   ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+N K+ NL  A+K++T T GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 120  YMQRCVENDKEFNLTLAVKSQTXTDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 180  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR D++
Sbjct: 240  SEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRNLRRRGDIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIAL------QQ 650
             EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +  L      + 
Sbjct: 300  PEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHVHKLLSSEYDEY 359

Query: 651  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLHPEEAYAD---- 701
             E  E   W  LV  G +EY+D EEEET MI+MT  DL       A   P+E   D    
Sbjct: 360  DEDSESYTWSSLVNDGIVEYVDAEEEETIMIAMTPEDLEASKSAIAESQPQEQELDPAKR 419

Query: 702  ----------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
                      T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY 
Sbjct: 420  IKPTFSGSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYS 479

Query: 752  FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
             RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSI
Sbjct: 480  VRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSI 539

Query: 812  DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVS 871
            DRG FRSLFFR+Y D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  PG RVS
Sbjct: 540  DRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVS 599

Query: 872  GEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 929
            GED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +FVKV
Sbjct: 600  GEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKV 659

Query: 930  RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 989
            R+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPSRMT+  L
Sbjct: 660  RMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHL 719

Query: 990  IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            IEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGFE MYNGHTG++L A
Sbjct: 720  IECLLSKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRGFEVMYNGHTGKKLMA 776


>gi|342180758|emb|CCC90234.1| unnamed protein product [Trypanosoma congolense IL3000]
 gi|343476499|emb|CCD12414.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 1186

 Score = 1010 bits (2611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/1177 (46%), Positives = 762/1177 (64%), Gaps = 44/1177 (3%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            EI  ED W VIS++F EKGLV QQ+DS+++F+   +  +     +I  R + Q  PG + 
Sbjct: 33   EIDSEDIWEVISSFFREKGLVHQQVDSYNDFLLR-IPRMARSLLEIVPRQDDQFEPGVEM 91

Query: 82   DFAETIYKISFGQIYLSKP---MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
            +     Y++S   + +  P   +   S  E   LFP   RLR+LTY A   V +  RV +
Sbjct: 92   ESEPDQYRLSLEDVVVGNPSHEISGFSRAEMHPLFPNECRLRDLTYDANAQVTLGIRVYR 151

Query: 139  KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
               D    T  Q+     +G++PIML+S  C L    E++L  L ECP+DQGGYFI+NG+
Sbjct: 152  SREDQPYRTFLQNME---LGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGT 208

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKVLIAQE+ + NHVY F + +      + E++S+ E     P T+ + M  + S  G  
Sbjct: 209  EKVLIAQERQAANHVYAFTRPK----GLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHG 264

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
              + +   +  +   IP+ I+FRAL   +DK+IL+ +  D +D  M+E+LR S+E+A  +
Sbjct: 265  Y-ENLLCRVAQMDELIPLFILFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTL 323

Query: 319  Q--NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            Q   +  AL +IGKR      +RD   + A+++L +++LPH+G     +  K  + GY++
Sbjct: 324  QVFTRDEALWFIGKRLGKQD-SRDNLQREAQDLLMRDLLPHMGVDCAADRSKCLFIGYMV 382

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            HRLLL ALGRR + DRD  G+KR+D+AG LL         ++ R++   V     N   V
Sbjct: 383  HRLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVHDFSTNRSGV 442

Query: 437  -NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
             +    + ++ IT G++  LATGN+G   +   + GVSQ LNRLTY+S+LS+LRR+ +PI
Sbjct: 443  VSFGRILHSRLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRIQNPI 502

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
                K  +PR LH +QWG +CP ETPEG + GL+KNLALM  ++ GS    +++ ++   
Sbjct: 503  SASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQVVQSR- 561

Query: 556  TENFEEISPAVIP--QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIR 613
            T  F  I+ A +   +  ++FVNG  +G+H DPE L++ LR  RR  +++ EV VVRDIR
Sbjct: 562  TTGFHSITLADLADVRVARVFVNGTLIGVHADPERLLRELRARRRGGELSNEVSVVRDIR 621

Query: 614  LKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG----GWHDLVAKGFIE 669
             +E+R+++D GRC RPLF+VEK R+ ++K  I  L +  +   G     W  ++ KG++E
Sbjct: 622  DREIRVFSDGGRCLRPLFVVEKSRVKLQKGKIGELLEPSAAPGGRREISWSRVMKKGYVE 681

Query: 670  YIDTEEEETTMISMTINDLVQARLHPEEAYADT-YTHCEIHPSLILGVCASIIPFPDHNQ 728
             +D EEE++ +I+M           P E   +  Y+HCE+ PS+ILG+CASIIP+P+HNQ
Sbjct: 682  LVDCEEEDSLLIAMG----------PSEVGKNYFYSHCEMDPSMILGICASIIPYPNHNQ 731

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMG+Y +N+  RMDT A+VL+YPQKPLV T+AM ++    LPAG NA
Sbjct: 732  SPRNTYQSAMGKQAMGVYASNFNMRMDTTAHVLFYPQKPLVRTKAMSYMRSNDLPAGHNA 791

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKEDFGRPDRSN 846
            IVAIACYSGYNQEDS+IM++S+++RGFFRS+F+RSY+  +E+K+ G   +E F  PDR  
Sbjct: 792  IVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKASEEKKREG---QEMFEIPDR-K 847

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ---DEAQGQASRYTRRDHSIS 903
               ++   Y KLD DGL  PG  V G D+I+GKT PI +   ++     +R  +RD SIS
Sbjct: 848  VCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPIPESMREDTTLTNTRILKRDCSIS 907

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
             R +E G+VD+V+LT N  G RF KVR+R+++IP IGDKF SRHGQKGT G+ + QED+P
Sbjct: 908  SRTAEKGVVDRVMLTENK-GNRFTKVRIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDLP 966

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023
            +  +GI+PD+I+NPHAIPSRMT+  LIE + GKVA   G E  ATPF  V V++  KAL 
Sbjct: 967  FNNDGISPDLIINPHAIPSRMTVAHLIETLAGKVACFKGGEVYATPFCSVVVEDFGKALT 1026

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
            +      G E +YNGHTG  L  +IF GPTYYQRLKH+  DKIH+R RGP+Q L RQP E
Sbjct: 1027 QLNLNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTE 1086

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE 1143
            GR+ +GGLRFGEMERDCM+++GAS +L+ERLF  SD Y VHVC  CG I  A+  +N ++
Sbjct: 1087 GRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNVCGTICAADTDQNVYK 1146

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            C+GC N + I QV +PYACKLLFQELM+MAI PR+ T
Sbjct: 1147 CQGCDNDSHIAQVLMPYACKLLFQELMSMAILPRLGT 1183


>gi|261327712|emb|CBH10689.1| DNA-directed RNA polymerase II subunit 2,putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1189

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/1198 (45%), Positives = 772/1198 (64%), Gaps = 44/1198 (3%)

Query: 1    MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            + +DD D   +    E     +I  ED W +IS++F EKGLV QQ+DS+++F+   +  +
Sbjct: 15   ITDDDVDDIHRVAGMENVNTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFLLR-IPRM 73

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKP---MMTESDGETATLFPKAA 117
                 +I  R + Q +PG   +     Y++S   + +  P   M   S  E   LFP   
Sbjct: 74   ARSLLEIVPRQDDQFDPGVHVESEPDQYRLSLEDVVVGNPSHEMSGFSRTEMHPLFPNEC 133

Query: 118  RLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEK 177
            RLR+LTY A   V +  RV +   +    T  Q+     +G++PIML+S  C L    E+
Sbjct: 134  RLRDLTYDAVAQVTLAIRVYRSREEQPYRTFLQNME---LGRIPIMLKSMRCNLLNKDEE 190

Query: 178  DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQ 237
            +L  L ECP+DQGGYFI+NG+EKVLIAQE+ + NHVY F + +      + E++S+ E  
Sbjct: 191  ELPRLNECPHDQGGYFIVNGTEKVLIAQERQAANHVYAFTRPK----GLLCEIKSIVEGS 246

Query: 238  NRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY 297
               P T+ + M  + S  G    + +   +  +   IP+ ++FRAL   +DK+IL+ +  
Sbjct: 247  LNKPRTLQILMPYKKSGPGHGY-ENLLCRVAQMDELIPLFVLFRALDMGSDKEILQTVVP 305

Query: 298  DFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEML 355
            D +D  M+E+LR S+E+A  ++   +  AL +IGKR      +R+   + A+++L +++L
Sbjct: 306  DLKDVAMLEMLRGSMEDASTLEIFTRDEALWFIGKRLGKQD-SRENLQREAQDLLMRDLL 364

Query: 356  PHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 415
            PH+G     +  K  + GY++HRLLL ALGRR + DRD  G+KR+D+AG LL        
Sbjct: 365  PHMGVDCAADRGKCLFIGYMVHRLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFL 424

Query: 416  RKLTRDVRAYVQKCVDN-GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ 474
             ++ R++   V     N G  V+    +  + IT G++  LATGN+G   +   + GVSQ
Sbjct: 425  VQVRREMAQTVHDYSTNRGGVVSFGRILHNRLITDGMRRCLATGNFGDLKSGNIKTGVSQ 484

Query: 475  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 534
             LNRLTY+S+LS+LRR+ +PI    K  +PR LH +QWG +CP ETPEG + GL+KNLAL
Sbjct: 485  TLNRLTYSSSLSNLRRIQNPISASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLAL 544

Query: 535  MVYITVGSAAYPILEFLEEWGTENFEEISPAVIP--QATKIFVNGCWVGIHRDPEMLVKT 592
            M  ++ GS    +++ ++   T  F  I+ + +   +  ++FVNG  +G+H DPE L++ 
Sbjct: 545  MCLVSRGSDHTGVVQAVQSRIT-GFHSIALSDLADVRVARVFVNGTLIGVHGDPERLLRD 603

Query: 593  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 652
            LR  RR  +++ EV +VRDIR +E+R+++D GRC RPLF+VEK R+ ++K  I  L +  
Sbjct: 604  LRARRRGGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVEKSRIKLQKAGIGELLEPS 663

Query: 653  SPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT-YTHCE 707
            +   G     W+ ++ KG++E ID EEE++ +I+M           P E   +  Y+HCE
Sbjct: 664  TTLGGRREISWNKVMKKGYVELIDCEEEDSLLIAMV----------PSEVGKNYFYSHCE 713

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            + PS+ILG+CASIIP+P+HNQSPRNTYQSAMGKQAMGIY +N+  RMDT A+VL+YPQKP
Sbjct: 714  MDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKP 773

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR-- 825
            LV T+AM ++    LPAG NAIVAIACYSGYNQEDS+IM++S+++RGFFRS+F+RSY+  
Sbjct: 774  LVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKAS 833

Query: 826  DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
            +E+K+ G   +E F  PDR     ++   Y KLD DGL  PG  V G D+I+GKT P+ +
Sbjct: 834  EEKKREG---REMFEIPDR-KVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPK 889

Query: 886  DEAQGQA---SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 942
              ++G     +R  +RD SIS R +E G+VD+V+LT N  G RF KVR+R+++IP IGDK
Sbjct: 890  TLSEGSPVSDTRILKRDCSISSRAAEKGVVDRVMLTENK-GNRFTKVRIRTIKIPNIGDK 948

Query: 943  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
            F SRHGQKGT G+ + QEDMP+  +GI+PD+I+NPHAIPSRMT+  LIE + GKVA + G
Sbjct: 949  FCSRHGQKGTNGIQFRQEDMPFNHDGISPDLIINPHAIPSRMTVAHLIETLAGKVACYKG 1008

Query: 1003 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             E  ATPF  V V++  KAL +      G E +YNGHTG  L  +IF GPTYYQRLKH+ 
Sbjct: 1009 GEVYATPFCSVVVEDFGKALTQLKLNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLS 1068

Query: 1063 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 1122
             DKIH+R RGP+Q L RQP EGR+ +GGLRFGEMERDCM+++GAS +L+ERLF  SD Y 
Sbjct: 1069 SDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYS 1128

Query: 1123 VHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            VHVC  CG I  A+  +N ++C+GC N + I QV +PYACKLLFQELM+MAI PR+ T
Sbjct: 1129 VHVCNMCGTICAADTDQNLYKCQGCDNDSHISQVLMPYACKLLFQELMSMAILPRLGT 1186


>gi|396941873|gb|AFN89654.1| RNA polymerase II, partial [Candida multigemmis]
          Length = 779

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/780 (61%), Positives = 603/780 (77%), Gaps = 39/780 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  
Sbjct: 1    LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KAY+ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKL++D+  
Sbjct: 60   ETRKAYFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFRKLSKDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 120  YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 180  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR D++
Sbjct: 240  SEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRNLRRRGDIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRE---- 652
             EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  I  L   E    
Sbjct: 300  PEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNSEYDEF 359

Query: 653  --SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV--QARLHPEEA---------- 698
                E  GW  LV+ G +EY+D EEEET MI+MT +DL   ++ L P+E           
Sbjct: 360  DEDSESYGWSSLVSDGIVEYVDAEEEETIMIAMTPDDLESNKSTLSPDEQKMLQLEEQEL 419

Query: 699  ----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
                       + T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++T
Sbjct: 420  DPAKRIKPTYNSHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 479

Query: 749  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
            NY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI+CYSGYNQEDS+IMNQ
Sbjct: 480  NYAVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAISCYSGYNQEDSMIMNQ 539

Query: 809  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
            SSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  PG 
Sbjct: 540  SSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGV 599

Query: 869  RVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
            RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +F
Sbjct: 600  RVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKF 659

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
            VKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD+I+NPHAIPSRMT+
Sbjct: 660  VKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFSSQGIVPDLIINPHAIPSRMTV 719

Query: 987  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
              LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MYNGHTG++L A
Sbjct: 720  AHLIECLLSKVSSLSGLEGDASPFTDVTTEAVSKLLREHGYQSRGFEVMYNGHTGKKLMA 779


>gi|396941885|gb|AFN89660.1| RNA polymerase II, partial [Schwanniomyces etchellsii]
          Length = 782

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/783 (61%), Positives = 603/783 (77%), Gaps = 42/783 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  
Sbjct: 1    LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  
Sbjct: 60   ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+N K+ NL  A+K++T+T GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 120  YMQRCVENDKEFNLTLAVKSQTVTDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 180  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HRDP  LV T++ LRRR D++
Sbjct: 240  SEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHRDPAHLVATMKNLRRRGDIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIAL------QQ 650
             EV ++RDIR KE RI+TD GR  RPLFIV+       K  L +KK  +  L      + 
Sbjct: 300  PEVSIIRDIREKEFRIFTDAGRVYRPLFIVDDDPDSETKGDLKLKKEHVNKLINAEYDEF 359

Query: 651  RESPEDGG--WHDLVAKGFIEYIDTEEEETTMISMTINDL----------------VQ-- 690
             E PE+    W  LV  G +EY+D EEEE+ MI+MT +DL                +Q  
Sbjct: 360  NEDPENVSYSWSSLVNDGVVEYVDAEEEESIMIAMTPDDLEANKSSLSETQQMDLQIQEQ 419

Query: 691  -----ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 745
                  R+ P  +   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+
Sbjct: 420  EIDPAKRIKPTFSGHHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGV 479

Query: 746  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 805
            ++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+I
Sbjct: 480  FLTNYNVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMI 539

Query: 806  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 865
            MNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  
Sbjct: 540  MNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIA 599

Query: 866  PGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADG 923
            PG RVSGED+IIGKTTPI  D E  GQ ++Y  +RD S  LR +E+G+VDQVLLTTN DG
Sbjct: 600  PGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHVKRDASTPLRSTESGIVDQVLLTTNGDG 659

Query: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
             +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPSR
Sbjct: 660  AKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLIINPHAIPSR 719

Query: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043
            MT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGFE MYNGHTG++
Sbjct: 720  MTVAHLIECLLSKVSSLSGLEGDASPFTDVTTEAISKLLREHGYQSRGFEVMYNGHTGKK 779

Query: 1044 LTA 1046
            L A
Sbjct: 780  LMA 782


>gi|396941875|gb|AFN89655.1| RNA polymerase II, partial [Kurtzmaniella cleridarum]
          Length = 781

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/782 (61%), Positives = 601/782 (76%), Gaps = 42/782 (5%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LPH+   +  E
Sbjct: 1    EMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPHITQEEGFE 59

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            T+KAY+ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  Y
Sbjct: 60   TRKAYFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNY 119

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+ST
Sbjct: 120  MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+++
Sbjct: 180  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTSS 239

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR D++ 
Sbjct: 240  EPILYFLEEWGMEPLEDYVPSTSPDSTRVFVNGVWVGTHREPSQLVDTMRSLRRRGDISP 299

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQRES---P 654
            EV ++RDIR KE +I+TD GR  RPLF+V+          L ++K +I  L   E     
Sbjct: 300  EVSIIRDIREKEFKIFTDAGRVYRPLFVVDDDPESETHGELKLQKENIHKLLNSEYGDYD 359

Query: 655  EDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPEEAYA 700
            ED      W  L+  G +EY+D EEEET MI+M+  DL           Q +L  EE   
Sbjct: 360  EDSENMYNWTSLLNDGVVEYVDAEEEETIMIAMSPEDLEASKVSLTEQQQKKLQEEEIDL 419

Query: 701  D--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746
            D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG++
Sbjct: 420  DPAKRIKTTSHGNSLTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVF 479

Query: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806
            +TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+IM
Sbjct: 480  LTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIM 539

Query: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 866
            NQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  P
Sbjct: 540  NQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDDDGLIAP 599

Query: 867  GTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGL 924
            G RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG 
Sbjct: 600  GVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGA 659

Query: 925  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 984
            +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD+I+NPHAIPSRM
Sbjct: 660  KFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSGQGIVPDLIINPHAIPSRM 719

Query: 985  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            T+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGFE MY+GHTG++L
Sbjct: 720  TVAHLIECLLSKVSSLSGLEGDASPFTDVTAEQISKLLREHGYQSRGFEVMYHGHTGKKL 779

Query: 1045 TA 1046
             A
Sbjct: 780  MA 781


>gi|72388214|ref|XP_844531.1| DNA-directed RNA polymerase II subunit 2 [Trypanosoma brucei TREU927]
 gi|62359772|gb|AAX80202.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
            brucei]
 gi|70801064|gb|AAZ10972.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
            brucei brucei strain 927/4 GUTat10.1]
          Length = 1190

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/1198 (45%), Positives = 772/1198 (64%), Gaps = 44/1198 (3%)

Query: 1    MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            + +DD D   +    E     +I  ED W +IS++F EKGLV QQ+DS+++F+   +  +
Sbjct: 16   ITDDDVDDIHRVAGMENVNTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFLLR-IPRM 74

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKP---MMTESDGETATLFPKAA 117
                 +I  R + Q +PG   +     Y++S   + +  P   M   S  E   LFP   
Sbjct: 75   ARSLLEIVPRQDDQFDPGVHVESEPDQYRLSLEDVVVGNPSHEMSGFSRTEMHPLFPNEC 134

Query: 118  RLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEK 177
            RLR+LTY A   V +  RV +   +    T  Q+     +G++PIML+S  C L    E+
Sbjct: 135  RLRDLTYDAVAQVTLAIRVYRSREEQPYRTFLQNME---LGRIPIMLKSMRCNLLNKDEE 191

Query: 178  DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQ 237
            +L  L ECP+DQGGYFI+NG+EKVLIAQE+ + NHVY F + +      + E++S+ E  
Sbjct: 192  ELPRLNECPHDQGGYFIVNGTEKVLIAQERQAANHVYAFTRPK----GLLCEIKSIVEGS 247

Query: 238  NRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY 297
               P T+ + M  + S  G    + +   +  +   IP+ ++FRAL   +DK+IL+ +  
Sbjct: 248  LNKPRTLQILMPYKKSGPGHGY-ENLLCRVAQMDELIPLFVLFRALDMGSDKEILQTVVP 306

Query: 298  DFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEML 355
            D +D  M+E+LR S+E+A  ++   +  AL +IGKR      +R+   + A+++L +++L
Sbjct: 307  DLKDVAMLEMLRGSMEDASTLEIFTRDEALWFIGKRLGKQD-SRENLQREAQDLLMRDLL 365

Query: 356  PHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 415
            PH+G     +  K  + GY++HRLLL ALGRR + DRD  G+KR+D+AG LL        
Sbjct: 366  PHMGVDCAADRGKCLFIGYMVHRLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFL 425

Query: 416  RKLTRDVRAYVQKCVDN-GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ 474
             ++ R++   V     N G  V+    +  + IT G++  LATGN+G   +   + GVSQ
Sbjct: 426  VQVRREMAQTVHDYSTNRGGVVSFGRILHNRLITDGMRRCLATGNFGDLKSGNIKTGVSQ 485

Query: 475  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 534
             LNRLTY+S+LS+LRR+ +PI    K  +PR LH +QWG +CP ETPEG + GL+KNLAL
Sbjct: 486  TLNRLTYSSSLSNLRRIQNPISASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLAL 545

Query: 535  MVYITVGSAAYPILEFLEEWGTENFEEISPAVIP--QATKIFVNGCWVGIHRDPEMLVKT 592
            M  ++ GS    +++ ++   T  F  I+ + +   +  ++FVNG  +G+H DPE L++ 
Sbjct: 546  MCLVSRGSDHTGVVQAVQSRIT-GFHSIALSDLADVRVARVFVNGTLIGVHGDPERLLRD 604

Query: 593  LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE 652
            LR  RR  +++ EV +VRDIR +E+R+++D GRC RPLF+VEK R+ ++K  I  L +  
Sbjct: 605  LRARRRGGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVEKSRIKLQKAGIGELLEPS 664

Query: 653  SPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT-YTHCE 707
            +   G     W+ ++ KG++E ID EEE++ +I+M           P E   +  Y+HCE
Sbjct: 665  TTLGGRREISWNKVMKKGYVELIDCEEEDSLLIAMV----------PSEVGKNYFYSHCE 714

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            + PS+ILG+CASIIP+P+HNQSPRNTYQSAMGKQAMGIY +N+  RMDT A+VL+YPQKP
Sbjct: 715  MDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKP 774

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR-- 825
            LV T+AM ++    LPAG NAIVAIACYSGYNQEDS+IM++S+++RGFFRS+F+RSY+  
Sbjct: 775  LVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKAS 834

Query: 826  DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
            +E+K+ G   +E F  PDR     ++   Y KLD DGL  PG  V G D+I+GKT P+ +
Sbjct: 835  EEKKREG---REMFEIPDR-KVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPK 890

Query: 886  ---DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 942
               +E+    +R  +RD SIS R +E G+VD+V+LT N  G RF KVR+R+++IP IGDK
Sbjct: 891  TLSEESPVSDTRILKRDCSISSRAAEKGVVDRVMLTENK-GNRFTKVRIRTIKIPNIGDK 949

Query: 943  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
            F SRHGQKGT G+ + QEDMP+  +GI+PD+I+NPHAIPSRMT+  LIE + GKVA + G
Sbjct: 950  FCSRHGQKGTNGIQFRQEDMPFNHDGISPDLIINPHAIPSRMTVAHLIETLAGKVACYKG 1009

Query: 1003 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             E  ATPF  V V++  KAL +      G E +YNGHTG  L  +IF GPTYYQRLKH+ 
Sbjct: 1010 GEVYATPFCSVVVEDFGKALTQLKLNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLS 1069

Query: 1063 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 1122
             DKIH+R RGP+Q L RQP EGR+ +GGLRFGEMERDCM+++GAS +L+ERLF  SD Y 
Sbjct: 1070 SDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYS 1129

Query: 1123 VHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            VHVC  CG I  A+  +N ++C+GC N + I QV +PYACKLLFQELM+MAI PR+ T
Sbjct: 1130 VHVCNMCGTICAADTDQNLYKCQGCDNDSHISQVLMPYACKLLFQELMSMAILPRLGT 1187


>gi|396941881|gb|AFN89658.1| RNA polymerase II, partial [Debaryomyces hansenii]
          Length = 781

 Score = 1009 bits (2609), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/782 (61%), Positives = 603/782 (77%), Gaps = 41/782 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  
Sbjct: 1    LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLT+D+  
Sbjct: 60   ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 120  YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG++
Sbjct: 180  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTS 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR D++
Sbjct: 240  SEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRNLRRRGDIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPED 656
             EV ++RDIR KE +I+TD GR  RPLFIV+       K  L +KK ++  L   E  + 
Sbjct: 300  PEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDAESETKGELKLKKENVHKLINAEYDDF 359

Query: 657  G--------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----------LHPEEA 698
            G         W  LV  G +EY+D EEEET MI+MT  DL  +R          +  EE 
Sbjct: 360  GDDPDSLSYSWSSLVNDGIVEYVDAEEEETIMIAMTPEDLETSRSTLSETEQKDMQLEEQ 419

Query: 699  YAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746
              D            T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG++
Sbjct: 420  EVDPAKRIKPTLGLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVF 479

Query: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806
            +TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IM
Sbjct: 480  LTNYAVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIM 539

Query: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 866
            NQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ +RHG+Y+KLDDDGL  P
Sbjct: 540  NQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPTRSDTLRLRHGTYEKLDDDGLIAP 599

Query: 867  GTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGL 924
            G RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG 
Sbjct: 600  GVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGA 659

Query: 925  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 984
            +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ PD+I+NPHAIPSRM
Sbjct: 660  KFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGVVPDLIINPHAIPSRM 719

Query: 985  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            T+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MYNGHTG++L
Sbjct: 720  TVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYNGHTGKKL 779

Query: 1045 TA 1046
             A
Sbjct: 780  MA 781


>gi|55583688|gb|AAV53363.1| RNA polymerase II second largest subunit [Grifola frondosa]
          Length = 719

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/720 (67%), Positives = 576/720 (80%), Gaps = 24/720 (3%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DD DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+
Sbjct: 1    DDSDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P
Sbjct: 121  NTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
              TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  R
Sbjct: 181  -CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCR 239

Query: 629  PLFIVEKQRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTIND 687
            PLFIVE Q+LL++K+ I  L + +  E G  W +L+  G IE +D EEEET MI MT +D
Sbjct: 240  PLFIVENQQLLLQKKHIEKLVKGKDDELGYKWDNLIKDGVIELLDAEEEETVMICMTPDD 299

Query: 688  LVQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQ 728
            L  +RL       H  E   D            T+THCEIHPS+ILGVCASIIPFPDHNQ
Sbjct: 300  LENSRLQASGVDPHANEGEFDPGARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQ 359

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360  SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNA 419

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420  IVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRDTTL 479

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 906
             M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ 
Sbjct: 480  RMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKS 539

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E+G++DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540  TESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTDVTV+++S  L + G
Sbjct: 600  EGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDVTVESVSAVLRQRG 659

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            YQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRS
Sbjct: 660  YQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRS 719


>gi|396941933|gb|AFN89683.1| RNA polymerase II, partial [Wickerhamiella domercqiae]
          Length = 781

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/784 (61%), Positives = 607/784 (77%), Gaps = 45/784 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E L+P +EE F +Q++QVALD+IG+RG+  G+++DKRI+YA++ILQKE+LPH+   +  
Sbjct: 1    LEALKPCVEEGFFVQDRQVALDFIGRRGSVTGISKDKRIRYARDILQKELLPHITQQEGY 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY++HR+LL AL RR +DDRDH+G KRLDLAGPLL  LFRMLF+KLTRD+  
Sbjct: 61   ETRKAFFLGYMVHRMLLVALDRRDQDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  KD N+  A+K+ TIT+GLKYSLATGNWG Q  A  ++AGVSQVLNR TY+S
Sbjct: 121  YMQKCVEGNKDFNVTLAVKSNTITNGLKYSLATGNWGDQKRAMSSKAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIG++GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  ++VGS 
Sbjct: 181  TLSHLRRTNTPIGKDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTGVSVGSP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI+ FLEEWG E  E+  P     AT++FVNG W+G+HR+P +LV+T+R LRRR D++
Sbjct: 241  SDPIIYFLEEWGMEPLEDFVPHANNNATRVFVNGVWIGVHREPTLLVETMRNLRRRGDIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-----------QRLLIKKRDIIALQQRE 652
             E+ +VRDIR KE +I TD GR  RPLFIV+             RLL    + +     +
Sbjct: 301  PEITIVRDIREKEFKILTDAGRVYRPLFIVQNGTDLKLTKDHVDRLLYTDENALP---PD 357

Query: 653  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH--------PEEA------ 698
            SP+   W  LV +G +EYID EEEET MI+MT +DL QA+L+        PE        
Sbjct: 358  SPDYFSWSQLVQQGIVEYIDGEEEETVMIAMTPDDLEQAKLNTARNGGEPPETVDNSIDM 417

Query: 699  --------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
                            +T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 418  PIDTGRRLKPKLNNMGNTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 477

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            +++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+
Sbjct: 478  VFLTNYNVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSM 537

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKLD+DGL 
Sbjct: 538  IMNQSSIDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHGTYDKLDEDGLV 597

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 922
             PG RVSGED+IIGKT PI  D E  GQ +R+ T+RD S  LR +E+G+VDQVLLTTN +
Sbjct: 598  IPGQRVSGEDIIIGKTAPIPPDTEELGQRTRFHTKRDASTPLRSTESGIVDQVLLTTNQE 657

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            GLRFVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T EGI PD+I+NPHAIPS
Sbjct: 658  GLRFVKVRMRTTKVPQIGDKFASRHGQKGTVGITYRHEDMPFTAEGIVPDLIINPHAIPS 717

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMT+  LIEC++ KV A  G EGDATPFTDVTVD ISK L + GYQ RGFE MYNGHTGR
Sbjct: 718  RMTVAHLIECLLSKVGALSGLEGDATPFTDVTVDAISKLLREHGYQSRGFEVMYNGHTGR 777

Query: 1043 RLTA 1046
            ++ A
Sbjct: 778  KIVA 781


>gi|396941817|gb|AFN89626.1| RNA polymerase II, partial [Nakaseomyces delphensis]
          Length = 763

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/763 (62%), Positives = 597/763 (78%), Gaps = 31/763 (4%)

Query: 315  AFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGY 374
             FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  E++KA++ GY
Sbjct: 1    GFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGY 60

Query: 375  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
            +I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LFRKLT+D+  Y+Q+ V+   
Sbjct: 61   MINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEAN 120

Query: 435  DVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
            D N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+STLSHLRR N+
Sbjct: 121  DFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNT 180

Query: 494  PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 553
            PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+   PI+ FL E
Sbjct: 181  PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPIITFLSE 240

Query: 554  WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIR 613
            WG E  E+  P   P AT++FVNG W G+HR+P  L++TLR LRR+ D+N EV ++RDIR
Sbjct: 241  WGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIR 300

Query: 614  LKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDIIALQQRESPE-DGG-------- 658
             +EL+I+TD GR  RPLFIVE      ++ L ++K  +  L   E  + +GG        
Sbjct: 301  EQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVAKLMATEYQDIEGGFEDAEEYT 360

Query: 659  WHDLVAKGFIEYIDTEEEETTMISMTINDLVQA---RLHPEEA----------YADTYTH 705
            W  L+ +G +EYID EEEE+ +I+M   DL  A    + P+            +A T+TH
Sbjct: 361  WSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAGEPDVRPDNVDLAKRIRVTHHATTFTH 420

Query: 706  CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 765
            CEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY FRMDT+A +LYYPQ
Sbjct: 421  CEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNFRMDTMANILYYPQ 480

Query: 766  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 825
            KPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY 
Sbjct: 481  KPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYM 540

Query: 826  DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
            D+EKK G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSGED+IIGKTTPI+ 
Sbjct: 541  DQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIIIGKTTPIAP 600

Query: 886  DEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
            DE + GQ + Y ++RD S  LR +E G+VDQVL+TTN DGL+FVKVRVR+ ++PQIGDKF
Sbjct: 601  DEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKVPQIGDKF 660

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            +SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC++ KVAA  G 
Sbjct: 661  ASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGN 720

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A
Sbjct: 721  EGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMA 763


>gi|396941863|gb|AFN89649.1| RNA polymerase II, partial [Hyphopichia burtonii]
          Length = 783

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/784 (61%), Positives = 601/784 (76%), Gaps = 43/784 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  
Sbjct: 1    LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLT+D+  
Sbjct: 60   ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 120  YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 180  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI  FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR D++
Sbjct: 240  SEPISYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAQLVDTMRNLRRRGDIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDI---IALQQRES 653
             EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +   I  +  E 
Sbjct: 300  PEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPDSETKGDLKLQKEHVHKLINSEYDEY 359

Query: 654  PEDGG-----WHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPEEA 698
             ED       W  LV+ G +EY+D EEEET MI+MT  DL           Q  +  EE 
Sbjct: 360  DEDSADSAYTWSSLVSDGIVEYVDAEEEETIMIAMTPEDLEASKTSLSETQQKEVQLEEQ 419

Query: 699  YAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
              D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 420  EQDPAKRIKPTFSGSLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 479

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            +++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 480  VFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSM 539

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL 
Sbjct: 540  IMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLI 599

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 922
             PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN D
Sbjct: 600  APGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGD 659

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            G +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ PD+I+NPHAIPS
Sbjct: 660  GAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVVPDLIINPHAIPS 719

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGFE MYNGHTG+
Sbjct: 720  RMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRGFEVMYNGHTGK 779

Query: 1043 RLTA 1046
            +L A
Sbjct: 780  KLMA 783


>gi|396941957|gb|AFN89695.1| RNA polymerase II, partial [Trigonopsis variabilis]
          Length = 757

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/757 (62%), Positives = 590/757 (77%), Gaps = 29/757 (3%)

Query: 319  QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
            Q+++VALDYIG+RGA +G+ ++KR++YA++ILQKE+LPH+   +  ET+KA++ GY++HR
Sbjct: 1    QDREVALDYIGRRGAAMGINKEKRLRYARDILQKELLPHITQEEGFETRKAFFLGYMVHR 60

Query: 379  LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
            +LL A+GR   DDRDH+G KRLDLAGPLL  LFR LFRKLTRDV  Y+QKCV+  KD NL
Sbjct: 61   MLLVAMGRAEVDDRDHFGKKRLDLAGPLLAKLFRDLFRKLTRDVYRYMQKCVETNKDFNL 120

Query: 439  QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
              A+K+ TIT+GL+YSLATGNWG Q      RAGVSQVLNR T++STLSHLRR N+PIGR
Sbjct: 121  TLAVKSNTITNGLRYSLATGNWGDQKKFMSARAGVSQVLNRYTFSSTLSHLRRTNTPIGR 180

Query: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
            +GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS A PI+ FLEEWG E
Sbjct: 181  DGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPAEPIICFLEEWGME 240

Query: 558  NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
              E+  P   P  T++FVNG W+G+HRD   L  T++ LRR+ D+++EV ++RDIR KE 
Sbjct: 241  PLEDFVPHASPNVTRVFVNGVWIGVHRDASHLTDTMKSLRRKGDISSEVSIIRDIREKEF 300

Query: 618  RIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDGG--WHDLVAKGFI 668
            RI+TD GR  RPLF+V+       K  L+++K  +  L + E  E  G  W  LV  G +
Sbjct: 301  RIFTDAGRVYRPLFLVDNDPDSERKGELILQKEHVSRLLEDEGEEGSGYGWSSLVQDGVV 360

Query: 669  EYIDTEEEETTMISMTINDLVQAR-LHPEEAYAD----------------TYTHCEIHPS 711
            EYID EEEET MI+MT  DL  AR LH   A                   T+THCEIHPS
Sbjct: 361  EYIDGEEEETIMIAMTPEDLEYARQLHESNAEPKEELDPAKRVKQHLDLLTWTHCEIHPS 420

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TT
Sbjct: 421  MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATT 480

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            R+MEH  FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLFFRSY D+E+++
Sbjct: 481  RSMEHFKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYMDQERRV 540

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQG 890
            G  V E+F +P R++T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI  ++E  G
Sbjct: 541  GMSVVEEFEKPSRADTLRLKHGTYDKLDDDGLIAPGVRVSGEDIIIGKTAPIPPENEELG 600

Query: 891  QASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            Q +++ T+RD S  LR +E+G+VDQVLLTTN +GLRFVKVR+R+ +IPQIGDKF+SRHGQ
Sbjct: 601  QRTKFHTKRDASTPLRSTESGIVDQVLLTTNQEGLRFVKVRMRTTKIPQIGDKFASRHGQ 660

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGT+G+TY  EDMP+T +GI PDII+NPHAIPSRMT+  LIEC++ KV+A  G EGDATP
Sbjct: 661  KGTIGITYRHEDMPFTAQGIVPDIIINPHAIPSRMTVAHLIECLLSKVSALSGYEGDATP 720

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            FT+VTVD +S+ L + GYQ RGFE MYNGHTGR+L A
Sbjct: 721  FTEVTVDAVSRLLREHGYQSRGFEVMYNGHTGRKLVA 757


>gi|56694294|gb|AAW22887.1| RNA polymerase II second largest subunit [Lycopodium annotinum]
          Length = 533

 Score = 1007 bits (2603), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/534 (88%), Positives = 500/534 (93%), Gaps = 1/534 (0%)

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            ACGLVKNLALM YITVGSAA PIL  LEEW TENFEEISPAVIPQ+TKIFVNGCWVGIHR
Sbjct: 1    ACGLVKNLALMAYITVGSAANPILVXLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHR 60

Query: 585  DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRD 644
            +PE LV TLR+LRR+VDVNTEVGV RDIRLKELR+YTDYGRCSRPLFIVEKQRLLIKK  
Sbjct: 61   NPEHLVNTLRQLRRQVDVNTEVGVXRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSH 120

Query: 645  IIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYT 704
            I ALQQ+ESPE GGW +LV+KGFIEY+DTEEEETTMISMTI+DLV AR +P EAY+DTYT
Sbjct: 121  IRALQQKESPE-GGWFELVSKGFIEYVDTEEEETTMISMTISDLVNARNNPNEAYSDTYT 179

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPSLILGVC SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYP
Sbjct: 180  HCEIHPSLILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 239

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQSS+DRGFFRS+F+RSY
Sbjct: 240  QKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSVDRGFFRSIFYRSY 299

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
            RDEEKK GTLVKE+F RP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+ 
Sbjct: 300  RDEEKKQGTLVKEEFERPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLP 359

Query: 885  QDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
            QDE   QA RYT+RD S  LRHSE+GM+DQ +LTTNADGLRFVKVRVRS+RIPQIGDKFS
Sbjct: 360  QDETGTQAQRYTKRDQSTCLRHSESGMIDQXVLTTNADGLRFVKVRVRSIRIPQIGDKFS 419

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGTVGMTYTQEDMPWT EGI PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE
Sbjct: 420  SRHGQKGTVGMTYTQEDMPWTQEGIXPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 479

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL AMIF+GPTYYQRL
Sbjct: 480  GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLNAMIFIGPTYYQRL 533


>gi|396941871|gb|AFN89653.1| RNA polymerase II, partial [Spathaspora passalidarum]
          Length = 779

 Score = 1007 bits (2603), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/780 (61%), Positives = 601/780 (77%), Gaps = 40/780 (5%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  E
Sbjct: 1    EMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFE 59

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            T+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLT+D+  Y
Sbjct: 60   TRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNY 119

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+ST
Sbjct: 120  MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ +
Sbjct: 180  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPS 239

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PIL FLEEWG E+ E+  P+  P +T++FVNG WVG HRDP  LV T+R LRRR D++ 
Sbjct: 240  EPILYFLEEWGMESLEDYVPSNSPDSTRVFVNGVWVGTHRDPVNLVDTMRSLRRRGDISP 299

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG 657
            EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  ++ L   E  +  
Sbjct: 300  EVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDSESETKGDLKLQKEHVLKLLNSEYDDYD 359

Query: 658  G-----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----------LHPEEAYAD- 701
            G     W  LV  G +EY+D EEEET MI+MT  DL  ++          +  EE   D 
Sbjct: 360  GDEGYNWTSLVNDGIVEYVDAEEEETIMIAMTPEDLEASKNTLSQTQIKAMQVEEQELDP 419

Query: 702  -------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
                         T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++T
Sbjct: 420  AKRIKPVFSSATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 479

Query: 749  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
            NY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDS+IMNQ
Sbjct: 480  NYSVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 539

Query: 809  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
            SSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  PG 
Sbjct: 540  SSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGV 599

Query: 869  RVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
            RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +F
Sbjct: 600  RVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKF 659

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
            VKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPSRMT+
Sbjct: 660  VKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLIINPHAIPSRMTV 719

Query: 987  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
              LIEC++ KV+A  G EGDA+PFTDVT + +S+ L + GYQ RGFE MYNGHTG++L A
Sbjct: 720  AHLIECLLSKVSALSGLEGDASPFTDVTAEAVSRLLREHGYQSRGFEVMYNGHTGKKLMA 779


>gi|396941837|gb|AFN89636.1| RNA polymerase II, partial [Eremothecium cymbalariae]
          Length = 776

 Score = 1007 bits (2603), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/776 (61%), Positives = 603/776 (77%), Gaps = 34/776 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  
Sbjct: 1    LEMLKPCVEEGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LFRKLTRD+  
Sbjct: 61   ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            ++Q+ V+  KD NL+ A+KA TIT+GLKY+LATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  FMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
              PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV T+R+LRR+ D+ 
Sbjct: 241  PVPIITFLNEWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGDIT 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-------QRLLIKKRDIIALQQRESPE- 655
             EV +VRDIR KEL+I+TD GR  RPLF+V +       + L ++K  I  L   E  + 
Sbjct: 301  AEVSIVRDIREKELKIFTDAGRVYRPLFVVAESLHNDGHKELKVRKGHIRKLMLTEYQDI 360

Query: 656  DGG---------WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQARLHPEEA----- 698
            +GG         W  L+ +G +EYID EEEET +I+M   DL   V     P +      
Sbjct: 361  EGGFEEEDINYTWTSLLNEGIVEYIDAEEEETILIAMQQEDLDPNVPQTADPSDELDPAR 420

Query: 699  ------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 752
                  +++T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  
Sbjct: 421  RIKAIHHSNTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNV 480

Query: 753  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 812
            RMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSID
Sbjct: 481  RMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSID 540

Query: 813  RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 872
            RG FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSG
Sbjct: 541  RGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSG 600

Query: 873  EDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 930
            +D+IIGKTTPI  D E  GQ + + ++RD S  LR +E G+VDQVL+TTN +GL+FVKVR
Sbjct: 601  DDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVR 660

Query: 931  VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 990
            VR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHAIPSRMT+  LI
Sbjct: 661  VRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTSEGVVPDLIINPHAIPSRMTVAHLI 720

Query: 991  ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            EC++ KVAA  G EGDA+PFTD+TVD IS+ L + GYQ RGFE MYNGHTG++L A
Sbjct: 721  ECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMA 776


>gi|343477106|emb|CCD11984.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 1186

 Score = 1006 bits (2602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1177 (46%), Positives = 761/1177 (64%), Gaps = 44/1177 (3%)

Query: 22   EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            EI  ED W VIS++F EKGLV QQ+DS+++F+   +  +     +I  R + Q  PG + 
Sbjct: 33   EIDSEDIWEVISSFFREKGLVHQQVDSYNDFLLR-IPRMARSLLEIVPRQDDQFEPGVEM 91

Query: 82   DFAETIYKISFGQIYLSKP---MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
            +     Y++S   + +  P   +   S  E   LFP   RLR+LTY A   V +  RV +
Sbjct: 92   ESEPDQYRLSLEDVVVGNPSHEISGFSRAEMHPLFPNECRLRDLTYDANAQVTLGIRVYR 151

Query: 139  KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
               D    T  Q+     +G++PIML+S  C L    E++L  L ECP+DQGGYFI+NG+
Sbjct: 152  SREDQPYRTFLQNME---LGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGT 208

Query: 199  EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
            EKVLIAQE+ + NHVY F + +      + E++S+ E     P T+ + M  + S  G  
Sbjct: 209  EKVLIAQERQAANHVYAFTRPK----GLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHG 264

Query: 259  SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
              + +   +  +   IP+ I+FRAL   +DK+IL+ +  D +D  M+E+LR S+E+A  +
Sbjct: 265  Y-ENLLCRVAQMDELIPLFILFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTL 323

Query: 319  Q--NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            Q   +  AL +IGKR      +RD   + A+++L +++LPH+G     +  K  + GY++
Sbjct: 324  QVFTRDEALWFIGKRLGKQD-SRDNLQREAQDLLMRDLLPHMGVDCAADRSKCLFIGYMV 382

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            HRLLL ALGRR + DRD  G+KR+D+AG LL         ++ R++   V     N   V
Sbjct: 383  HRLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVHDFSTNRSGV 442

Query: 437  -NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
             +    + ++ IT G++  LATGN+G   +   + GVSQ LNRLTY+S+LS+LRR+ +PI
Sbjct: 443  VSFGRILHSRLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRIQNPI 502

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
                K  +PR LH +QWG +CP ETPEG + GL+KNLALM  ++ GS    +++ ++   
Sbjct: 503  SASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQVVQSR- 561

Query: 556  TENFEEISPAVIP--QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIR 613
            T  F  I+ A +   +  ++FVNG  +G+H DPE L++ LR  RR  +++ EV VVRDIR
Sbjct: 562  TTGFHSITLADLADVRVARVFVNGTLIGVHADPERLLRELRARRRGGELSNEVSVVRDIR 621

Query: 614  LKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG----GWHDLVAKGFIE 669
             +E+R+++D GRC RPLF+VEK R+ ++K  I  L +  +   G     W  ++ KG++E
Sbjct: 622  DREIRVFSDGGRCLRPLFVVEKSRVKLQKGKIGELLEPSAAPGGRREISWSRVMKKGYVE 681

Query: 670  YIDTEEEETTMISMTINDLVQARLHPEEAYADT-YTHCEIHPSLILGVCASIIPFPDHNQ 728
             +D EEE++ +I+M           P E   +  Y+HCE+ PS+ILG+CASIIP+P+HNQ
Sbjct: 682  LVDCEEEDSLLIAMG----------PSEVGKNYFYSHCEMDPSMILGICASIIPYPNHNQ 731

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMG+Y +N+  RMDT A+VL+YPQKPLV T+AM ++    LPAG NA
Sbjct: 732  SPRNTYQSAMGKQAMGVYASNFNMRMDTTAHVLFYPQKPLVRTKAMSYMRSNDLPAGHNA 791

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR--DEEKKMGTLVKEDFGRPDRSN 846
            IVAIACYSGYNQEDS+IM++S+++RGFFRS+F+RSY+  +E+K+ G   +E F  PDR  
Sbjct: 792  IVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKASEEKKREG---QEMFEIPDR-K 847

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ---DEAQGQASRYTRRDHSIS 903
               ++   Y KLD DGL  PG  V G D+I+GKT PI +   ++     +R  +RD SIS
Sbjct: 848  VCHVKRADYTKLDTDGLIKPGIPVIGGDIIVGKTIPIPESMREDTTLTNTRILKRDCSIS 907

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
             R +E G+VD+V+LT N  G RF KVR+R+++IP IGDKF S HGQKGT G+ + QED+P
Sbjct: 908  SRTAEKGVVDRVMLTENK-GNRFTKVRIRTIKIPNIGDKFCSPHGQKGTNGIQFRQEDLP 966

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023
            +  +GI+PD+I+NPHAIPSRMT+  LIE + GKVA   G E  ATPF  V V++  KAL 
Sbjct: 967  FNNDGISPDLIINPHAIPSRMTVAHLIETLAGKVACFKGGEVYATPFCSVVVEDFGKALT 1026

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE 1083
            +      G E +YNGHTG  L  +IF GPTYYQRLKH+  DKIH+R RGP+Q L RQP E
Sbjct: 1027 QLNLNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTE 1086

Query: 1084 GRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE 1143
            GR+ +GGLRFGEMERDCM+++GAS +L+ERLF  SD Y VHVC  CG I  A+  +N ++
Sbjct: 1087 GRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNVCGTICAADTDQNVYK 1146

Query: 1144 CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            C+GC N + I QV +PYACKLLFQELM+MAI PR+ T
Sbjct: 1147 CQGCDNDSHIAQVLMPYACKLLFQELMSMAILPRLGT 1183


>gi|340053396|emb|CCC47686.1| putative DNA-directed RNA polymerase II subunit 2 [Trypanosoma vivax
            Y486]
          Length = 1186

 Score = 1006 bits (2601), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1199 (45%), Positives = 766/1199 (63%), Gaps = 49/1199 (4%)

Query: 1    MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
            + +D Y Y E  Q   E +  E+  ED W +IS++F EKGLV QQ+DS+++F+   +  +
Sbjct: 15   LRDDAYQYAEADQ---EYDSAEVDSEDVWEIISSFFREKGLVHQQIDSYNDFLLR-IPRM 70

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDG----ETATLFPKA 116
                 ++  R +SQ  PG Q D     Y++S   + +  P   E+ G    E   LFP  
Sbjct: 71   ARSLLEVVPRQDSQFEPGMQLDVEPDQYRLSLEDVVVGNPS-HETSGFSRQEMHPLFPNE 129

Query: 117  ARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 176
             RLR++TY A   V +  RV +   +    T  Q+     +G++PIML+S  C L    E
Sbjct: 130  CRLRDMTYDANAQVTLGIRVYRSREEQPYRTFLQNME---LGRIPIMLKSIRCNLLYKDE 186

Query: 177  KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAE- 235
             +L  L ECP+DQGGYFIING+EKVL+AQE+ + NHVY F + +      + E++S+ E 
Sbjct: 187  DELPRLNECPHDQGGYFIINGTEKVLVAQERQAANHVYAFTRPK----GLLCEIKSIVEG 242

Query: 236  SQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 295
            S N+P +   +    +T    G      R     +   IP+ ++FRAL   +D++IL+ +
Sbjct: 243  SLNKPRTFQIIMPYKKTGPGHGYENLLCRVA--QMDELIPLFVLFRALDMGSDREILQTV 300

Query: 296  CYDFQDTQMMELLRPSLEEAFVIQ--NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKE 353
              D +D  M+E+LR S+E+A  +Q   +  AL +IGKR      +R+   + A+ +L ++
Sbjct: 301  VPDLKDAAMLEMLRGSMEDASTLQIFTRDEALWFIGKRLGRQD-SRENLQREAQGLLMRD 359

Query: 354  MLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 413
            +LPH+G     +  K  + GY++HRLLL ALGRR + DRD  G+KR+D+AG LL      
Sbjct: 360  LLPHMGVDCTADRGKCLFIGYMVHRLLLLALGRREDTDRDFLGHKRIDVAGALLTFQLNH 419

Query: 414  LFRKLTRDVRAYVQK-CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGV 472
               ++ +++   V       G  V+    + ++ IT G++  LATGN+G   +   + GV
Sbjct: 420  FLVQVRKEMSKTVHDYSTSRGGVVSFAKILHSRLITDGMRRCLATGNFGDLKSGNIKTGV 479

Query: 473  SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 532
            SQ LNRLTY+S+LS+LRR+ +PI    K  +PR LH +QWG +CP ETPEG + GL+KNL
Sbjct: 480  SQTLNRLTYSSSLSNLRRIQNPISASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNL 539

Query: 533  ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA--TKIFVNGCWVGIHRDPEMLV 590
            ALM  I+ GS    + + ++   T  F  +  + +      ++FVNG  +G+HRDPE L+
Sbjct: 540  ALMCLISRGSDHTSVAQTVQARIT-GFHSVGLSDLADVRLARVFVNGTLIGVHRDPERLL 598

Query: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQ 650
            + LR  RR  +++ EV +VRDIR +E+R+++D GRC RPLF+VEK  L ++K  +  L +
Sbjct: 599  RELRARRRGGELSNEVSIVRDIRDREIRVFSDAGRCIRPLFVVEKSSLKLRKAGMGELLE 658

Query: 651  RESPEDG----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 706
                  G     W+ ++ +G++E ID EEE++ +I+M  +++ +            Y+HC
Sbjct: 659  PSRAPGGQRQISWNRVMKRGYVELIDCEEEDSLLIAMAPSEVGKNYF---------YSHC 709

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            E+ PS+ILG+CASIIP+P+HNQSPRNTYQSAMGKQAMGIY +N+  RMDT A++L+YPQK
Sbjct: 710  EMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHILFYPQK 769

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR- 825
            PLV T+AM ++    LPAG NA+VAIACYSGYNQEDS+IM++S+++RGFFRS+F+RSY+ 
Sbjct: 770  PLVRTKAMSYMRSNDLPAGHNAVVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKA 829

Query: 826  -DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
             +E KK G   KE F  PDR     ++   Y KLD DGL  PG  V G D+++GKT PI 
Sbjct: 830  SEENKKEG---KEVFEVPDR-KICHVKRADYSKLDTDGLIKPGMPVMGGDILVGKTVPIP 885

Query: 885  Q---DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 941
            +   + A    +R  +RD SIS R +E G+VD+V+LT N  G RF KV+VR+++IP IGD
Sbjct: 886  ESMRENATTANTRIMKRDCSISSRTAEKGVVDKVMLTENK-GNRFTKVKVRTIKIPNIGD 944

Query: 942  KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1001
            KF SRHGQKGT G+ + QEDMP+  +GI+PD+I+NPHAIPSRMT+  LIE + GKVA + 
Sbjct: 945  KFCSRHGQKGTNGIQFRQEDMPFNSDGISPDLIINPHAIPSRMTVAHLIETLAGKVACYK 1004

Query: 1002 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 1061
            G E  ATPF  V V++  KAL +      G E +YNGHTG  L  +IF GPTYYQRLKH+
Sbjct: 1005 GGEVYATPFCSVVVEDFGKALQQLKCHRYGNECLYNGHTGLPLEHLIFFGPTYYQRLKHL 1064

Query: 1062 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAY 1121
              DKIH+R RGP+Q L RQP EGR+ +GGLRFGEMERDCM+++GAS +L+ERLF  SD Y
Sbjct: 1065 SGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYY 1124

Query: 1122 RVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             VHVC  CG I  A+ ++N + C+GC N   I  V +PYACKLLFQELM+MAI PR+ T
Sbjct: 1125 AVHVCNMCGTICAADTEQNVYNCQGCDNDARISHVLMPYACKLLFQELMSMAILPRLGT 1183


>gi|55584698|gb|AAV53580.1| RNA polymerase II second largest subunit [Rhodocollybia maculata]
          Length = 721

 Score = 1006 bits (2600), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/720 (66%), Positives = 574/720 (79%), Gaps = 24/720 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLANLFRMLFRKLTKDVYRYMQKCVETHKEFNLALAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTPTMTKVFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HR+P  LVKT+R+LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q
Sbjct: 182  GVWMGVHREPANLVKTIRKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVEDQ 241

Query: 637  RLLIKKRDIIALQ--QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 694
            +L+++K+ +  LQ    +   D  W  LV  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 242  QLVLQKKHVRWLQNGHNDDSADFKWEHLVKSGIIELLDAEEEETVMISMTPEDLENSRLQ 301

Query: 695  -----PEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
                 P E                A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 302  QQGIDPHENDGEFDPAARLKSGITAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 361

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 362  SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 421

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SG+NQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 422  SGHNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLRMKHGTY 481

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 913
            DKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VD
Sbjct: 482  DKLEDDGLIAPGTGVLGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVD 541

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QVL+TTN++G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 542  QVLITTNSEGRKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDI 601

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L   GYQ RG E
Sbjct: 602  IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRDRGYQSRGLE 661

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
             M++GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 662  VMFHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 721


>gi|396941879|gb|AFN89657.1| RNA polymerase II, partial [Priceomyces castillae]
          Length = 777

 Score = 1006 bits (2600), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/778 (61%), Positives = 599/778 (76%), Gaps = 37/778 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+PS+EE FVIQ +++ALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  
Sbjct: 1    LEMLKPSVEEGFVIQEREIALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KAY+ GY+++RLLL AL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  
Sbjct: 60   ETRKAYFLGYMVNRLLLAALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A   RAGVSQVLNR TY+S
Sbjct: 120  YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG +CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 180  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGSVCPAETPEGQACGLVKNLSLMSCISVGTP 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR D++
Sbjct: 240  SEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTIRNLRRRGDIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIAL------QQ 650
             EV ++RDIR KE +I+TD GR  RPLF+V+       K  L +KK  +  L      + 
Sbjct: 300  PEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDDPESETKGELKLKKEYVHKLLNSEYDEY 359

Query: 651  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP--------EEA---- 698
             E  E   W  L++ G +EY+D EEEET MI+MT  DL   +  P        EEA    
Sbjct: 360  DEDAESYTWSSLLSDGIVEYVDAEEEETIMIAMTPEDLEANKEAPNRETEIAKEEADPAK 419

Query: 699  --------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 750
                    +  T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY
Sbjct: 420  RIKPTISGHGHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNY 479

Query: 751  QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 810
              RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+IMNQSS
Sbjct: 480  SVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSS 539

Query: 811  IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 870
            IDRG FRSLFFR+Y D EK+ G    E F +P R++T+ ++HG+Y+KLDDDGL  PG RV
Sbjct: 540  IDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRTDTLRLKHGTYEKLDDDGLIAPGVRV 599

Query: 871  SGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 928
            SGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +FVK
Sbjct: 600  SGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVK 659

Query: 929  VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
            VR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ PD+I+NPHAIPSRMT+  
Sbjct: 660  VRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGVVPDLIINPHAIPSRMTVAH 719

Query: 989  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            LIEC++ KV++  G EGDA+PFTDVT + ISK L + GY  RGFE MYNGHTG++L A
Sbjct: 720  LIECLLSKVSSLSGLEGDASPFTDVTTEAISKLLRQHGYHSRGFEVMYNGHTGKKLMA 777


>gi|56694292|gb|AAW22886.1| RNA polymerase II second largest subunit [Isoetes sp. JZ73]
          Length = 536

 Score = 1005 bits (2599), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/537 (88%), Positives = 505/537 (94%), Gaps = 1/537 (0%)

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALM YITVGSAA PIL FLEEW TENFEEISPAVIPQ+TKIFVNGCWV
Sbjct: 1    PEGQACGLVKNLALMAYITVGSAANPILVFLEEWSTENFEEISPAVIPQSTKIFVNGCWV 60

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 640
            GIHRDPE LVKTLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSRPLFIVEKQRLLI
Sbjct: 61   GIHRDPEHLVKTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLI 120

Query: 641  KKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYA 700
            KK+DI +LQQ+ES E+G W+DLV KGFIEY+DTEEEETTMISMTI+DLV AR +PEEAY+
Sbjct: 121  KKKDIRSLQQKESSENG-WYDLVQKGFIEYVDTEEEETTMISMTISDLVNARNNPEEAYS 179

Query: 701  DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYV 760
            +TYTHCEIHPS+ILGV  SIIPFPD NQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYV
Sbjct: 180  ETYTHCEIHPSMILGVXGSIIPFPDXNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYV 239

Query: 761  LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF 820
            LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRS+F
Sbjct: 240  LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSIF 299

Query: 821  FRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 880
            +RSYR+EE K G+LVKE+F RP+R NT+GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT
Sbjct: 300  YRSYREEEXKQGSLVKEEFERPNRENTLGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 359

Query: 881  TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 940
             P+ QDE   QA RYT+RD S  LRHSE+GM+DQVLLTTNADGLRFVK RVRS+RIPQIG
Sbjct: 360  VPLPQDETGTQAQRYTKRDQSTPLRHSESGMIDQVLLTTNADGLRFVKTRVRSIRIPQIG 419

Query: 941  DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 1000
            DKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNPHAI SRMTIGQLIECIMGKVAAH
Sbjct: 420  DKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIXSRMTIGQLIECIMGKVAAH 479

Query: 1001 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            MGKEGDATPFTDVTVDNIS+ALHKCGYQMRGFE MYNGHTGR L+AMIFLGPTYYQR
Sbjct: 480  MGKEGDATPFTDVTVDNISRALHKCGYQMRGFERMYNGHTGRPLSAMIFLGPTYYQR 536


>gi|396941861|gb|AFN89648.1| RNA polymerase II, partial [Metschnikowia bicuspidata]
          Length = 781

 Score = 1005 bits (2598), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/782 (61%), Positives = 599/782 (76%), Gaps = 42/782 (5%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKEMLP++      E
Sbjct: 1    EMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKEMLPNITQEAGFE 59

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            ++KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLTRD+  Y
Sbjct: 60   SRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTRDIYNY 119

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A   RAGVSQVLNR TY+ST
Sbjct: 120  MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSARAGVSQVLNRYTYSST 179

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+++
Sbjct: 180  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTSS 239

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PIL FLEEWG E  E+  P+  P  T++FVNG WVG HR+P  LV T+RRLRR+ D++ 
Sbjct: 240  EPILYFLEEWGMEPLEDYVPSNAPDCTRVFVNGVWVGTHREPAQLVDTMRRLRRKGDISP 299

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQR---ESP 654
            EV ++RDIR  E +I+TD GR  RPLFIV+       K  L+++K  +  L      E  
Sbjct: 300  EVSIIRDIREMEFKIFTDAGRVYRPLFIVDDDPESETKGELMLQKEHVHKLLNSAYDEYD 359

Query: 655  EDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----------LHPEEAYA 700
            ED      W  LV  G +EY+D EEEET MI+MT  DL  ++          L  EE   
Sbjct: 360  EDDSSAYTWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLSETQQHDLQLEEQEL 419

Query: 701  D--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746
            D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG++
Sbjct: 420  DPAKRIKPTYTSSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVF 479

Query: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806
            +TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NA+VAIACYSGYNQEDS+IM
Sbjct: 480  LTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAVVAIACYSGYNQEDSMIM 539

Query: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 866
            NQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  P
Sbjct: 540  NQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAP 599

Query: 867  GTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGL 924
            G RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG 
Sbjct: 600  GVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGA 659

Query: 925  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 984
            +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD+I+NPHAIPSRM
Sbjct: 660  KFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPDLIINPHAIPSRM 719

Query: 985  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            T+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MYNGHTG+++
Sbjct: 720  TVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYNGHTGKKM 779

Query: 1045 TA 1046
             A
Sbjct: 780  MA 781


>gi|396941857|gb|AFN89646.1| RNA polymerase II, partial [Clavispora lusitaniae]
          Length = 783

 Score = 1005 bits (2598), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/784 (61%), Positives = 600/784 (76%), Gaps = 43/784 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++      
Sbjct: 1    LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEAGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLTRD+  
Sbjct: 60   ESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRLLFKKLTRDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A   RAGVSQVLNR TY+S
Sbjct: 120  YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+A
Sbjct: 180  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTA 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PIL FLEEWG E  E+  P+  P  T++FVNG WVG HR+P  LV T+RRLRR+ D++
Sbjct: 240  SEPILYFLEEWGMEPLEDYVPSNSPDCTRVFVNGVWVGTHREPAQLVDTMRRLRRKGDIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPED 656
             EV ++RDIR +E +I+TD GR  RPLFIV+       K  L+++K  I  L   E  E 
Sbjct: 300  PEVSIIRDIREREFKIFTDAGRVYRPLFIVDDDPESETKGDLVLQKEHIHKLINSEYDEY 359

Query: 657  G--------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPEEA 698
                      W  LV  G +EY+D EEEET MI+MT +DL           Q  L  EE 
Sbjct: 360  DEESQANAYTWSSLVNDGVVEYVDAEEEETIMIAMTPDDLEASKSSLSETQQKSLQLEEQ 419

Query: 699  YAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
              D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 420  ELDPAKRIKPTYTSSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 479

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            +++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 480  VFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 539

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL 
Sbjct: 540  IMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLI 599

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 922
             PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN D
Sbjct: 600  APGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGD 659

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            G +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD+I+NPHAIPS
Sbjct: 660  GAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPDLIINPHAIPS 719

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MYNGHTG+
Sbjct: 720  RMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYNGHTGK 779

Query: 1043 RLTA 1046
            +L A
Sbjct: 780  KLMA 783


>gi|396941865|gb|AFN89650.1| RNA polymerase II, partial [Hyphopichia heimii]
          Length = 783

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/784 (61%), Positives = 600/784 (76%), Gaps = 43/784 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  
Sbjct: 1    LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLT+D+  
Sbjct: 60   ESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 120  YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 180  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI  FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV+T+R LRRR D++
Sbjct: 240  SEPISYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAQLVETMRNLRRRGDIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPE- 655
             EV ++RDIR KE +I+TD GR  RPLFIV+       K  L + K  I  L   E  E 
Sbjct: 300  PEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPDSETKGELKLHKEHIHKLINSEYDEY 359

Query: 656  -----DGG--WHDLVAKGFIEYIDTEEEETTMISMTINDLVQA----------------- 691
                 D    W  LV  G +EY+D EEEET MI+MT  DL  +                 
Sbjct: 360  DEDTLDSAYTWSSLVNDGIVEYVDAEEEETIMIAMTPEDLDASKSALSETQQKDIQLEEQ 419

Query: 692  ------RLHPEEAYAD-TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
                  R+ P  + A  T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 420  EIDPAKRIKPTYSSATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 479

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            +++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 480  VFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSM 539

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL 
Sbjct: 540  IMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDDDGLI 599

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 922
             PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN D
Sbjct: 600  APGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGD 659

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            G +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPS
Sbjct: 660  GAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLIINPHAIPS 719

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GYQ RGFE MYNGHTG+
Sbjct: 720  RMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAISKLLREHGYQSRGFEVMYNGHTGK 779

Query: 1043 RLTA 1046
            +L A
Sbjct: 780  KLMA 783


>gi|396941801|gb|AFN89618.1| RNA polymerase II, partial [Ogataea minuta]
          Length = 785

 Score = 1004 bits (2596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/785 (60%), Positives = 600/785 (76%), Gaps = 43/785 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE F+IQ+Q+VALDYIG+RG +VG+ R++RI+YAK+ILQ+E LPH+      
Sbjct: 1    LEMLKPCIEEGFLIQSQEVALDYIGRRGNSVGIKRERRIQYAKDILQREFLPHISQDSGY 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET KAY+ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKL+RD+  
Sbjct: 61   ETNKAYFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+C++ G D N+  A+K+ TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQRCIERGDDFNVVSAVKSNTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  ++VGSA
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCVSVGSA 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI   LEEWG E   +  P     AT++F+NG WVG HRDP MLV T+R+LRR   ++
Sbjct: 241  SEPITYLLEEWGLEQLSDYEPQEHKHATRVFLNGNWVGTHRDPAMLVDTMRQLRRSGTIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPE- 655
             EV ++RDIR +E +I+TD GR  RPLF+V+       K  L + K D   +  RE  E 
Sbjct: 301  PEVSLIRDIREREFKIFTDAGRIYRPLFVVDDDPDSEHKGELKLTKEDCRKILDREVEEV 360

Query: 656  --------DG----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLV-------- 689
                    DG          GW  L++ G IEY+D EEEET +I+M+  DL+        
Sbjct: 361  AQDEDYDDDGEPLEPIQRIYGWDSLLSNGVIEYLDAEEEETVLIAMSPEDLIPTSEAEVI 420

Query: 690  -QARLHPEEAYAD-----TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
             Q  + P +   +     ++THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 421  RQVEMDPAKRIKNVVKTHSFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 480

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+++TNY  RMDT+A +LYYPQKPL  T++ME+L FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 481  GVFLTNYAVRMDTMANILYYPQKPLAKTQSMEYLKFRELPAGQNAIVAIACYSGYNQEDS 540

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            +IMNQSSIDRG FRSLFFRSY D+E++ G  V EDF +P R++T+G + G+Y+KLDDDGL
Sbjct: 541  MIMNQSSIDRGLFRSLFFRSYMDQERRNGISVVEDFEKPMRASTLGFKQGTYEKLDDDGL 600

Query: 864  APPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTNA
Sbjct: 601  IAPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTESGIVDQVLLTTNA 660

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +GL+F KVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIP
Sbjct: 661  EGLKFAKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGIVPDLIINPHAIP 720

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +SK L + GYQ RGFE MYNGHTG
Sbjct: 721  SRMTVAHLIECLLSKVASMRGYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVMYNGHTG 780

Query: 1042 RRLTA 1046
            ++L A
Sbjct: 781  KKLMA 785


>gi|396941903|gb|AFN89669.1| RNA polymerase II, partial [Cephaloascus fragrans]
          Length = 789

 Score = 1004 bits (2596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/790 (61%), Positives = 601/790 (76%), Gaps = 49/790 (6%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LPH+   +  
Sbjct: 1    LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPHITQEEGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  
Sbjct: 60   ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+  KD NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 120  YMQRCVETDKDFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS 
Sbjct: 180  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGSN 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI+ FLEEWG E  E+  P + P +T++FVNG WVG HR+P  LV+T+R LRR  D+ 
Sbjct: 240  SEPIIYFLEEWGMEPLEDYVPHLSPNSTRVFVNGVWVGTHREPATLVETMRNLRRSGDIE 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQR----- 651
             EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  I  L  +     
Sbjct: 300  PEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESEHKGELKLRKEHIRKLVNQEEDDA 359

Query: 652  ------------ESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-LH-- 694
                         S ED   GW  L+ +G IEY+D EEEET MI+MT  DL   R +H  
Sbjct: 360  DFDDELDEDGNPRSREDRSYGWDKLLREGLIEYVDAEEEETIMIAMTPEDLEANRDMHTG 419

Query: 695  --PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 738
              P +   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAM
Sbjct: 420  TDPNDEELDPAKRIRTAFNPNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAM 479

Query: 739  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 798
            GKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+MEHL FR+LPAG NAIVAI+CYSGY
Sbjct: 480  GKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRSMEHLKFRELPAGQNAIVAISCYSGY 539

Query: 799  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 858
            NQEDS+IMNQSSIDRG FRSLFFRSY D EK+ G  V E+F +P RSNT+ M+HG+Y+KL
Sbjct: 540  NQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKVLEEFEKPHRSNTLRMKHGTYEKL 599

Query: 859  DDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVL 916
            DDDGL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E G+VDQVL
Sbjct: 600  DDDGLIAPGFRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTENGIVDQVL 659

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            LTTN DG +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+N
Sbjct: 660  LTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRSEDMPFTAEGLVPDLIIN 719

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1036
            PHAIPSRMT+  LIEC++ KVA+  G EGDA+PFTDVTV+ +S  L   GY  RGFE MY
Sbjct: 720  PHAIPSRMTVAHLIECLLSKVASLSGLEGDASPFTDVTVEAVSNLLRDHGYHSRGFEVMY 779

Query: 1037 NGHTGRRLTA 1046
            NGHTG+++ A
Sbjct: 780  NGHTGKKMMA 789


>gi|396941901|gb|AFN89668.1| RNA polymerase II, partial [Yamadazyma triangularis]
          Length = 783

 Score = 1004 bits (2596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/784 (61%), Positives = 601/784 (76%), Gaps = 43/784 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ Q+VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  
Sbjct: 1    LEMLKPCVEEGFVIQEQEVALDFIGRRGV-LGIKREKRIQYAKDILQKELLPNITQDEGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
             T+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLTRD+  
Sbjct: 60   ATRKAFFLGYMVNRLLLCALERKEPDDRDHFGRKRLDLAGPLLANLFRILFKKLTRDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 120  YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 180  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PIL FLEEWG E  E   P+  P AT+ FVNG WVG HR+P +LV+T+R LRR+ D++
Sbjct: 240  SEPILLFLEEWGMEPLENYVPSHSPDATRCFVNGVWVGTHREPALLVETIRNLRRKGDIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPE- 655
             EV ++RDIR KE +I+TD GR  RPLF+V+       K  L + K  I  L + E  + 
Sbjct: 300  PEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDNPDSDTKGDLKLTKDHINRLMRAEYSDY 359

Query: 656  -------DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV----------QARLHPEEA 698
                   + GW  LV +G IEY+D EEEET MI+MT  DL           Q  L  +E 
Sbjct: 360  DAYDDESEYGWSSLVNEGVIEYVDAEEEETIMIAMTPEDLEASKSTLSESEQKSLQMQEQ 419

Query: 699  YAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
              D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 420  ELDPAKRIKPTYVGSLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 479

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            +++TNY  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 480  LFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 539

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+YDKLD+DG+ 
Sbjct: 540  IMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYDKLDEDGII 599

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 922
             PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN D
Sbjct: 600  TPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGLVDQVLLTTNGD 659

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            G +FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GITPD+I+NPHAIPS
Sbjct: 660  GAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTRQGITPDLIINPHAIPS 719

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMT+  LIEC++ KV++  G EGDA+PFTDVT + ISK L + GY  RGFE MYNGHTG+
Sbjct: 720  RMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEEISKLLREHGYHSRGFEVMYNGHTGK 779

Query: 1043 RLTA 1046
            +L A
Sbjct: 780  KLMA 783


>gi|328870070|gb|EGG18445.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
          Length = 1565

 Score = 1004 bits (2595), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/719 (67%), Positives = 574/719 (79%), Gaps = 22/719 (3%)

Query: 21  EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 80
           EEI QEDAW VIS+YF+EKGLVRQQLDSFDEFIQNTMQ+I+DES  I ++PE+QH PGQ 
Sbjct: 17  EEIVQEDAWTVISSYFQEKGLVRQQLDSFDEFIQNTMQDIIDESPPITLKPETQHQPGQS 76

Query: 81  SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
                T + I FGQIYLSKP  ++ DG T ++ P  AR+RNLTYSAPLYVD+TK +  K 
Sbjct: 77  QAHNYTTFSIKFGQIYLSKP-TSDIDGLTQSITPNQARIRNLTYSAPLYVDITKTLTTKQ 135

Query: 141 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLY---QNSEKDLTELGECPYDQGGYFIING 197
              EE  E     K+FIGKVPIMLRS YC L      S+ DL  +GECP+DQGGYF+ING
Sbjct: 136 SVEEEALE-----KIFIGKVPIMLRSKYCILSGDGDTSDTDLAMMGECPFDQGGYFVING 190

Query: 198 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
           SEKVLIAQEKMS NHVYVFKK  P+KY+YVAE+RS  E+ +RP STM+V+ML ++S   G
Sbjct: 191 SEKVLIAQEKMSHNHVYVFKKTPPSKYSYVAEIRSCQETGSRPTSTMYVKMLQKSSK--G 248

Query: 258 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
            SG  I+AT+PYI+ ++PI+++FRALGFVADKDILEHICYDF D Q+M+L+RPSLEE+FV
Sbjct: 249 PSG--IKATIPYIKMDVPIVVIFRALGFVADKDILEHICYDFSDAQLMDLMRPSLEESFV 306

Query: 318 IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
           IQNQ+VALDY+GKRG+TVG TRD RIK+A+E+LQKEMLPHV   ++ ETKKAYYFGYI+H
Sbjct: 307 IQNQEVALDYLGKRGSTVG-TRDHRIKFAREVLQKEMLPHVSVEEYFETKKAYYFGYIVH 365

Query: 378 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
           RLLL AL RR  DDRDH+ NKRLDLAGPLLG LFR LF+KLT+DVR ++Q+C+D GK+  
Sbjct: 366 RLLLAALERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRMWLQRCIDKGKEFT 425

Query: 438 LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
              AIK KTITSGLKYSLATGNWG A+ +G RAGV+QVLNRLT+ASTLSHLRRLN+PIGR
Sbjct: 426 PISAIKPKTITSGLKYSLATGNWGAAH-SGARAGVAQVLNRLTFASTLSHLRRLNTPIGR 484

Query: 498 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
           EGKLAKPRQLHN+ WG++CP+ETPEGQACGLVKNLA+M YI+VGSA+ PILEFLEEW TE
Sbjct: 485 EGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMAYISVGSASEPILEFLEEWSTE 544

Query: 558 NFEEIS-PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
           N EEI+ P+ I  ATKIFVNG WVGI++ P+ L+KTLR LR   DV+ EV +VRDIR KE
Sbjct: 545 NLEEITDPSSILNATKIFVNGMWVGINKQPDHLLKTLRTLRGCGDVSVEVSIVRDIREKE 604

Query: 617 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEE 676
           +R+YTD GRC RPLF+V   +LLIKK  I   Q      D  W DL+  G IEYIDTEEE
Sbjct: 605 IRLYTDAGRCCRPLFVVRDSKLLIKKSHI---QNLIVNPDYKWMDLITSGLIEYIDTEEE 661

Query: 677 ETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
           ET MI M  +DL+Q+     E     YTHCEIHPS+ILG+C SIIPFPDHNQSPRNTYQ
Sbjct: 662 ETVMIGMNPSDLIQSH---TETVTHNYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQ 717



 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/449 (75%), Positives = 394/449 (87%), Gaps = 2/449 (0%)

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            + SAMGKQAMG+Y+TNYQ RMDT+A+VL+YPQKPLVTTR+ME+LHFR+LPAG N  VAIA
Sbjct: 1117 HNSAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNVCVAIA 1176

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVI+NQS+IDRG FRS+F+RSY+DE+KK  +L++E F +PDR  T+GMRHG
Sbjct: 1177 CYSGYNQEDSVILNQSAIDRGMFRSMFYRSYKDEQKKQTSLMEETFEKPDRDTTVGMRHG 1236

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGM 911
            SY+K+D+DGL  PG RV+G+D+IIGKTTP+   +DE   +  R +++D S ++R SE G+
Sbjct: 1237 SYEKIDEDGLVAPGIRVTGDDIIIGKTTPLPPQEDELGPKTRRQSKKDSSTAMRSSENGV 1296

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQV+LTT+ DGL+F KVRVRS+R PQIGDKFSSRHGQKGT GM Y QED+PWTVEG+ P
Sbjct: 1297 VDQVVLTTSGDGLKFTKVRVRSMRTPQIGDKFSSRHGQKGTCGMAYRQEDLPWTVEGVVP 1356

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DIIVNPHAIPSRMTIGQLIEC++GKV+A  G EGDATPFTDVTV+ IS+ALHK GYQM G
Sbjct: 1357 DIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEAISQALHKIGYQMTG 1416

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
             E MYNGHTGRR+ A IF+GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGL
Sbjct: 1417 HEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGL 1476

Query: 1092 RFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKT 1151
            RFGEMERDCMI+HGA+ FLKERLFDQSD+YRVH+C+ CGLIAIANL+KNSFECR CKNKT
Sbjct: 1477 RFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLIAIANLRKNSFECRRCKNKT 1536

Query: 1152 DIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
             I QV IPYA KLLFQELMAM+IAPRM T
Sbjct: 1537 QISQVKIPYAAKLLFQELMAMSIAPRMFT 1565


>gi|396941793|gb|AFN89614.1| RNA polymerase II, partial [Cyberlindnera americana]
          Length = 763

 Score = 1003 bits (2593), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/763 (62%), Positives = 591/763 (77%), Gaps = 32/763 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EEAFVIQ+ +VALD+IG+RG  +G+ R+KRI+YA++ILQKE LPH+      
Sbjct: 1    LEMLKPCIEEAFVIQDTEVALDFIGRRGNGLGIRREKRIQYARDILQKEFLPHISQAQGM 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY+++RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+LFRKL+ D+  
Sbjct: 61   ETQKAFFLGYMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLSNLFRILFRKLSNDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+ V+ G D NL+ A+K  TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQRSVETGADFNLKIAVKPTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTG 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQ---ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            + PIL FLEEWG E   E  P        ATKIFVNG W G+H+D   L +T+R LRRR 
Sbjct: 241  SDPILWFLEEWGMEPLSEYKPTKDDSEGTATKIFVNGVWHGVHKDAAKLTETMRILRRRG 300

Query: 601  DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDIIALQQRE-- 652
            +++ EV ++RDIR KE R++TD GR  RPLFIVE      K+ L +KK ++  L + E  
Sbjct: 301  EISAEVSIIRDIREKEFRVFTDAGRVYRPLFIVEENHETGKKELALKKENVNKLLESEYE 360

Query: 653  ------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----------VQARLHP 695
                    E  GW  L+  G +EY+D EEEET MI+M+  DL             AR+ P
Sbjct: 361  AVDEETGEESYGWSSLLNNGIVEYVDAEEEETIMIAMSPEDLEPIDDVDDVVDPNARIKP 420

Query: 696  E-EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
                 A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM
Sbjct: 421  AFNKSAHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRM 480

Query: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
            DT+A +LYYPQKPL TTR+MEHL FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG
Sbjct: 481  DTMANILYYPQKPLATTRSMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRG 540

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
             FRSLFFRSY D+EK++G  V E+F +P+RSNT+ ++HG+Y+KLDDDGL  PG RVSGED
Sbjct: 541  LFRSLFFRSYMDQEKRVGMSVVEEFEKPNRSNTLRLKHGTYEKLDDDGLIAPGVRVSGED 600

Query: 875  VIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
            +IIGKTTPI  D E  GQ + Y T+RD S  LR +E G+VDQVL+TTN +GL+FVKVR+R
Sbjct: 601  IIIGKTTPIPPDIEELGQRTVYHTKRDASTPLRATENGIVDQVLITTNQEGLKFVKVRMR 660

Query: 933  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
            + ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC
Sbjct: 661  TTKVPQIGDKFASRHGQKGTIGVTYRREDMPFTSEGIVPDLIINPHAIPSRMTVAHLIEC 720

Query: 993  IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035
            ++ KV+A  G EGDA+PFTDVTVD IS  L + GYQ RGFE M
Sbjct: 721  LLSKVSAISGMEGDASPFTDVTVDAISNLLREHGYQSRGFEVM 763


>gi|328769515|gb|EGF79559.1| RNA polymerase II second largest subunit precursor [Batrachochytrium
            dendrobatidis JAM81]
          Length = 1312

 Score = 1003 bits (2593), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/690 (67%), Positives = 557/690 (80%), Gaps = 22/690 (3%)

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            NS     CPAETPEGQACGLVKNL+LM YITVGS A PILEFLEEW  E+ EEISP+ IP
Sbjct: 624  NSIVSHNCPAETPEGQACGLVKNLSLMGYITVGSPAPPILEFLEEWTMESLEEISPSTIP 683

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATKIF+NG WVGIHRDP+ LV TLRRLRR VDV+ EV VVRD+R +ELR+ TD GR +R
Sbjct: 684  TATKIFLNGQWVGIHRDPDQLVSTLRRLRRSVDVSPEVSVVRDVRDRELRLCTDAGRIAR 743

Query: 629  PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
             LF+V  ++ L+  ++++   Q+   +   W DL++ G +EYIDTEEEET MI MT +DL
Sbjct: 744  SLFVVTPEQSLVLTKEMV---QQLHEDQIQWKDLLSYGVVEYIDTEEEETVMICMTPDDL 800

Query: 689  VQAR-----------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
             +AR                 L     Y   YTHCEIHPS+ILG+CASIIPFPDHNQSPR
Sbjct: 801  AEARMAAAGQVVERHQVGTGRLKSATVYTRNYTHCEIHPSMILGICASIIPFPDHNQSPR 860

Query: 732  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
            N YQSAMGKQAMG+++TN+Q RMDT++ +L+YPQKPL TTRAME +HFR LPAGINA+VA
Sbjct: 861  NVYQSAMGKQAMGLFLTNFQLRMDTMSNILFYPQKPLATTRAMEFMHFRDLPAGINAVVA 920

Query: 792  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 851
            IACYSGYNQEDS+IMNQSSIDRG FRSL++R Y D+EKK+G +  E   +P R  T+ ++
Sbjct: 921  IACYSGYNQEDSLIMNQSSIDRGLFRSLYYRVYMDQEKKVGMISTETLEKPSRDTTLRLK 980

Query: 852  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSET 909
            HG+Y+KL+DDGL  PG RVSGED+IIGKT PI+ D  + GQ  + +T+RD S  L+ +E 
Sbjct: 981  HGTYEKLEDDGLIAPGVRVSGEDIIIGKTVPIAADSTELGQRTTMHTKRDASTPLKSTEN 1040

Query: 910  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
            G+VDQVL+TTN DG +FVKVRVRS+RIP +GDKF+SRHGQKGTVG+TY  EDMP+T +GI
Sbjct: 1041 GIVDQVLITTNQDGFKFVKVRVRSIRIPHMGDKFASRHGQKGTVGITYRTEDMPFTADGI 1100

Query: 970  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1029
            TPD+I+NPHAIPSRMTIG L+EC++ KV+   G EGDATPFTDVTV+ IS+AL   GYQ 
Sbjct: 1101 TPDLIINPHAIPSRMTIGHLVECLLSKVSTFTGDEGDATPFTDVTVEAISQALQGYGYQR 1160

Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1089
            RGFE +YNGHTGR+L A ++ GPTYYQRLKHMVDDKIHSR RGP+QILTRQP EGRSRDG
Sbjct: 1161 RGFEVLYNGHTGRKLNAQVYTGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDG 1220

Query: 1090 GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN 1149
            GLRFGEMERDCMI+HGA++FLKERLFD SDAYRVHVC+HCGL+A+ANLKKNSFECR C+N
Sbjct: 1221 GLRFGEMERDCMISHGAANFLKERLFDASDAYRVHVCDHCGLMAVANLKKNSFECRSCRN 1280

Query: 1150 KTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            KT I QV++PYACKLLFQELMAM IAPR++
Sbjct: 1281 KTQISQVYLPYACKLLFQELMAMNIAPRLM 1310



 Score =  223 bits (568), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 121/143 (84%), Gaps = 1/143 (0%)

Query: 375 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
           +IHRLLL AL RR  DDRDH+G KRLDLAGPLLGGLFRMLFRKLT+DV  Y+Q  +++G+
Sbjct: 1   MIHRLLLAALDRRETDDRDHFGKKRLDLAGPLLGGLFRMLFRKLTKDVSRYLQITMESGR 60

Query: 435 DVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
           + NL  A+K+ TIT+GLKYSLATGNWG Q      RAGVSQVLNR T+ASTLSHLRRLN+
Sbjct: 61  EFNLSLAVKSSTITNGLKYSLATGNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRLNT 120

Query: 494 PIGREGKLAKPRQLHNSQWGMMC 516
           PIGR+GKLAKPRQLHN+ WGM+C
Sbjct: 121 PIGRDGKLAKPRQLHNTHWGMVC 143


>gi|83415475|gb|ABC17945.1| RNA polymerase II second largest subunit, partial [Scutellospora
            heterogama]
          Length = 761

 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/760 (64%), Positives = 578/760 (76%), Gaps = 64/760 (8%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KR+DLAGPLL  LFRMLF+KLT+D+  Y++KC+D  ++ NL  AIKA+TIT+GLKYSLAT
Sbjct: 2    KRMDLAGPLLASLFRMLFKKLTKDISIYLRKCIDTSREFNLHLAIKAQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A  +RAGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-EEISPAVIPQATKIFV 575
            PAETPEGQACGLVKNL+LM YI+VGS++ PI++FLEE+G  N  ++  PA I   TK+FV
Sbjct: 122  PAETPEGQACGLVKNLSLMSYISVGSSSKPIVDFLEEYGMINLNQQFDPANIRDNTKVFV 181

Query: 576  NGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK 635
            NG W GI   PE L  TLR LRR VDV+ EV VVRDIR KELRIYTD GR  RPLFIVE 
Sbjct: 182  NGKWAGISTAPEQLANTLRGLRRSVDVSPEVSVVRDIREKELRIYTDAGRVCRPLFIVED 241

Query: 636  QRLLIKKRDIIALQQR----------ESPEDGG--------------------------- 658
            Q L+I K  I  L Q+          E P++                             
Sbjct: 242  QCLVISKELINNLDQKGRTSGQVYDDEYPDEDNRHVDGEEIQGENAQEQSQKRRQDRQVY 301

Query: 659  -WHDLVAKGFIEYIDTEEEETTMISMTINDL---------------------VQARLHPE 696
             WHDL++ G IEYID EEEET MI MT  DL                     V AR+  E
Sbjct: 302  VWHDLISNGAIEYIDAEEEETVMICMTPEDLAASMHFYQTGIARTSKTHEKDVAARVKSE 361

Query: 697  EAYA-DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
               +  T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMD
Sbjct: 362  SNLSIHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMD 421

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            TLA +LYYPQKPLVTTRAME L FR+LPAG NAIVAI CYSGYNQE+SVIMNQSSIDRG 
Sbjct: 422  TLANILYYPQKPLVTTRAMEFLRFRELPAGQNAIVAILCYSGYNQENSVIMNQSSIDRGL 481

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRS+F+RSY D+EKK+G L  E+F +P R  T+ ++HG+Y+KL++DGL  PGTRVSG+D+
Sbjct: 482  FRSIFYRSYMDQEKKVGILSIEEFDKPTRETTLRLKHGTYEKLEEDGLIAPGTRVSGDDI 541

Query: 876  IIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            IIGK TPI +   E   + + +T RD S  +R +E G+VDQV++TTNA+G++FVKVRVRS
Sbjct: 542  IIGKVTPIPEHTIELGQRKNTHTHRDASTPMRSTENGIVDQVMVTTNAEGMKFVKVRVRS 601

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             RIPQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGITPD+I+NPHAIPSRMTIG L+EC+
Sbjct: 602  TRIPQMGDKFASRHGQKGTIGITYRQEDMPFTSEGITPDLIINPHAIPSRMTIGHLVECL 661

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1053
            +GKV+   G+EGDATPFTDVTV+ IS +L + GY  RGFE MYNGHTGR+L A +FLGPT
Sbjct: 662  LGKVSTLTGQEGDATPFTDVTVEAISHSLRQNGYHSRGFEVMYNGHTGRKLAAQVFLGPT 721

Query: 1054 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            YYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 722  YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 761


>gi|156627835|gb|ABU88905.1| RNA polymerase II second largest subunit [Psilopezia deligata]
          Length = 801

 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/801 (60%), Positives = 613/801 (76%), Gaps = 47/801 (5%)

Query: 242  STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
            S+M +++ S+  AKG +S   I++TLPYI+ +IPI+IVFRALG V+D+DIL H+CYD  D
Sbjct: 17   SSMQIKLYSKGQAKGYNST--IKSTLPYIKIDIPIVIVFRALGVVSDEDILNHVCYDRND 74

Query: 302  TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
            T+M+E+++P +EEAFVIQ++++ALDYIGKRG + G  ++KRI+YA++ILQKE+LPH+   
Sbjct: 75   TEMLEMMKPCIEEAFVIQDREIALDYIGKRGNSQGSNKEKRIRYARDILQKELLPHISQQ 134

Query: 362  DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
            +  ET+KA++ GY++HRLL CAL RR  DDRDH+G KRLDLAGPLL  LFR L+++LT++
Sbjct: 135  EGNETRKAFFLGYMVHRLLQCALERREVDDRDHFGKKRLDLAGPLLAQLFRTLWKQLTKE 194

Query: 422  VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
            V  Y++KCV+ GK+ NL  A+K+ TITSGLKYSLATGNW  Q  AA ++AGVSQVLNR T
Sbjct: 195  VYKYLEKCVEGGKEFNLNLAVKSNTITSGLKYSLATGNWASQKKAASSKAGVSQVLNRYT 254

Query: 481  YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
            +ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNLALM YIT 
Sbjct: 255  FASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYIT- 313

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
                            E  EE  P   P ATKIFVNG WVGIHRDP  LV+T++RLRR  
Sbjct: 314  -------------RNMEPLEEYEPQRSPNATKIFVNGVWVGIHRDPLHLVRTVQRLRRTG 360

Query: 601  DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRES 653
             ++ EV V+RDIR +E +I+TD GR  RPLF++E       + +L+++K  I  L+    
Sbjct: 361  VISHEVSVIRDIRDREFKIFTDAGRVCRPLFVIENDPTSERRGQLVLQKEHIERLEDDHG 420

Query: 654  -PEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLH----------- 694
             PE+   GW  L++ G +EY+D EEEET MI MT  DL     VQA              
Sbjct: 421  LPEEERFGWKGLLSVGAVEYLDAEEEETVMIVMTPEDLELSRQVQAGYEIAEETDMAKRV 480

Query: 695  --PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 752
              P      T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+Q 
Sbjct: 481  KAPINPATHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFQE 540

Query: 753  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 812
            RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSID
Sbjct: 541  RMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSID 600

Query: 813  RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 872
            RG FRSLF+R Y D+EK++G  + E+F +P RS T+ ++ G+YDKLD+DGL  PG RVSG
Sbjct: 601  RGLFRSLFYRCYLDQEKRVGMQIVEEFEKPQRSTTLRLKXGTYDKLDEDGLVAPGVRVSG 660

Query: 873  EDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 930
            ED+IIGKT+PIS D +  GQ  +Y T+RD S  LR +E G+VDQV+ TTN++G++FVKVR
Sbjct: 661  EDIIIGKTSPISPDTDEMGQRQKYHTKRDVSTPLRSTENGIVDQVVFTTNSEGMKFVKVR 720

Query: 931  VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 990
            +R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LI
Sbjct: 721  MRTTKIPQIGDKFASRHGQKGTIGITYRMEDMPFTCEGIVPDLIINPHAIPSRMTIAHLI 780

Query: 991  ECIMGKVAAHMGKEGDATPFT 1011
            EC + KV++  G EGDATPFT
Sbjct: 781  ECQLSKVSSLRGYEGDATPFT 801


>gi|396941877|gb|AFN89656.1| RNA polymerase II, partial [Priceomyces haplophilus]
          Length = 774

 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/775 (61%), Positives = 593/775 (76%), Gaps = 36/775 (4%)

Query: 307  LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            +L+PS+EE FVIQ +++ALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  ET
Sbjct: 1    MLKPSVEEGFVIQEREIALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFET 59

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KAY+ GY+++RLLL AL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  Y+
Sbjct: 60   RKAYFLGYMVNRLLLAALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYM 119

Query: 427  QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
            Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A   RAGVSQVLNR TY+STL
Sbjct: 120  QRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTL 179

Query: 486  SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
            SHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ + 
Sbjct: 180  SHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSE 239

Query: 546  PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
            PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR D++ E
Sbjct: 240  PILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTIRNLRRRGDISPE 299

Query: 606  VGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRE------ 652
            V ++RDIR KE +I+TD GR  RPLF+V+       K  L +KK  +  L   E      
Sbjct: 300  VSIIRDIREKEFKIFTDAGRVYRPLFVVDDDPESETKGELKLKKEHVHKLLNSEYDEYDD 359

Query: 653  SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE---------------- 696
              E   W  L++ G +EY+D EEEET MI+MT  DL   +  P                 
Sbjct: 360  EAESYTWSSLLSDGIVEYVDAEEEETIMIAMTPEDLDANKEAPNRDALQIEEIDSAKRIK 419

Query: 697  ---EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
                    T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  R
Sbjct: 420  PTISGRGHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVR 479

Query: 754  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
            MDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDR
Sbjct: 480  MDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDR 539

Query: 814  GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
            G FRSLFFR+Y D EK+ G    E F +P R++T+ ++HG+Y+KLDDDGL  PG RVSGE
Sbjct: 540  GLFRSLFFRTYMDLEKRQGMKALETFEKPSRTDTLRLKHGTYEKLDDDGLIAPGVRVSGE 599

Query: 874  DVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            D+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +FVKVR+
Sbjct: 600  DIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRM 659

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +G+ PD+I+NPHAIPSRMT+  LIE
Sbjct: 660  RTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGVVPDLIINPHAIPSRMTVAHLIE 719

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            C++ KV++  G EGDA+PFTDVT + ISK L + GY  RGFE MYNGHTG++L A
Sbjct: 720  CLLSKVSSLSGLEGDASPFTDVTTEAISKLLRQHGYHSRGFEVMYNGHTGKKLMA 774


>gi|83415485|gb|ABC17950.1| RNA polymerase II second largest subunit, partial [Rhopalomyces
            elegans]
          Length = 723

 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/722 (65%), Positives = 568/722 (78%), Gaps = 26/722 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPL+ GLFRMLFRKLT+DV  Y+Q+ +D  +D NL  A+K+ T+T+GLKYSLAT
Sbjct: 2    KRLDLAGPLIAGLFRMLFRKLTKDVGKYLQRVIDENRDFNLTLAVKSTTLTNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A   RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM +I+VG+ + P++EFLEEW   N +E+       ATK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMTHISVGAPSRPVIEFLEEWAMVNLDEMYKTGTADATKVFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNT----EVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            G WVG+H +P  LV   R  RR     T    EV  V DIR +EL +++D GRC RPL++
Sbjct: 182  GVWVGVHNEPTQLVSVFRNFRRHETAATRVFQEVSCVSDIRERELWMFSDAGRCCRPLYV 241

Query: 633  VEKQRLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 690
            VE+ RL I K+ +  L +R  E     GW+ L+++G IE+IDTEEEET MI M+  DL +
Sbjct: 242  VEQNRLKITKQQVRVLDERDEEGKRVSGWNRLISEGVIEFIDTEEEETAMICMSPEDLAE 301

Query: 691  ARLHPEEA-----------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            AR + E                   Y+ T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 302  AREYYETGVPRPPSRDPAARISTTIYSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 361

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMG+Y+TNYQ RMDTLA ++YYPQKPLVTTRAME+L FR LPAG NA VAI 
Sbjct: 362  YQSAMGKQAMGVYLTNYQLRMDTLANIIYYPQKPLVTTRAMEYLKFRDLPAGQNATVAIL 421

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSSIDRG FRSLF+R Y D+EKK G  V E+F +P R  T+ M+HG
Sbjct: 422  CYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYMDQEKKAGVKVMEEFEKPTRDATLRMKHG 481

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YTRRDHSISLRHSETGM 911
            +YDKL+DDGL  PG RVSGED+IIGKT P+ ++ A+ GQ +R +TRRD S  LR +ETG+
Sbjct: 482  TYDKLEDDGLIAPGVRVSGEDIIIGKTAPLPEESAELGQRTRSHTRRDISTPLRSTETGI 541

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQV+LTTN +G++FVKVRVRS RIPQ+GDKF+SRHGQKGT+G+TY QEDMP++ +GI P
Sbjct: 542  VDQVMLTTNQEGVKFVKVRVRSTRIPQMGDKFASRHGQKGTIGITYRQEDMPFSADGIVP 601

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            D+I+NPHAIPSRMTIG ++EC++ KV+   G EGDATPFTDVTVD ISKAL   G+  RG
Sbjct: 602  DLIINPHAIPSRMTIGHMVECLLSKVSTLTGSEGDATPFTDVTVDAISKALAVHGFHQRG 661

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
            FE +YNGHTGR+LTA +FLGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGL
Sbjct: 662  FEVIYNGHTGRKLTAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGL 721

Query: 1092 RF 1093
            RF
Sbjct: 722  RF 723


>gi|396941795|gb|AFN89615.1| RNA polymerase II, partial [Ogataea angusta]
          Length = 786

 Score = 1001 bits (2587), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/786 (60%), Positives = 601/786 (76%), Gaps = 44/786 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE F+IQ+Q+VALDYIG+RG ++G+ +++RI+YAK+ILQ+E LPH+      
Sbjct: 1    LEMLKPCIEEGFLIQSQEVALDYIGRRGNSIGIKKERRIQYAKDILQREFLPHISQDSGY 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET KAY+ GYI++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKL+RD+  
Sbjct: 61   ETNKAYFLGYIVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+C++ G D N+  A+K+ TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQRCIERGDDFNIVSAVKSNTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM   +VGSA
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMACASVGSA 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI   LEEWG E   +  P     AT++F+NG WVG HRDP MLV+T+R+LRR   ++
Sbjct: 241  SEPITYLLEEWGLEPLSDYEPQEHKNATRVFLNGNWVGTHRDPAMLVETMRQLRRSGTIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--------RDIIAL 648
             EV ++RDIR +E +I+TD GR  RPLFIV+       K  L + K        R++  +
Sbjct: 301  PEVSLIRDIREREFKIFTDAGRIYRPLFIVDNDPDSEHKGELKLTKEHCRKILDREVEEI 360

Query: 649  QQRESPEDGG-----------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR----- 692
             Q E  +D G           W  L++ G IEY+D EEEET +I+M+  DL+ +      
Sbjct: 361  VQDEEFDDEGQPLGPVQRVFGWDSLLSNGIIEYLDAEEEETVLIAMSPEDLISSASAEVQ 420

Query: 693  -----LHPEE-----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742
                 L P +       A ++THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 421  KAERDLDPAKRIKNVVKAHSFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 480

Query: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802
            MG+++TNY  RMDT+A +LYYPQKPL  T++ME+L FR+LPAG NAIVAIACYSGYNQED
Sbjct: 481  MGVFLTNYSVRMDTMANILYYPQKPLAKTQSMEYLKFRELPAGQNAIVAIACYSGYNQED 540

Query: 803  SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862
            S+IMNQSSIDRG FRSLFFRSY D+E++ G  V E+F +P RS+T+G + G+Y+KLDDDG
Sbjct: 541  SMIMNQSSIDRGLFRSLFFRSYMDQERRSGISVVEEFEKPMRSSTLGFKQGTYEKLDDDG 600

Query: 863  LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTN 920
            L  PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN
Sbjct: 601  LIAPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTESGIVDQVLLTTN 660

Query: 921  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
            A+GL+F KVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAI
Sbjct: 661  AEGLKFAKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGIVPDLIINPHAI 720

Query: 981  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1040
            PSRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +SK L + GYQ RGFE MYNGHT
Sbjct: 721  PSRMTVAHLIECLLSKVASMRGYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVMYNGHT 780

Query: 1041 GRRLTA 1046
            G++L A
Sbjct: 781  GKKLMA 786


>gi|396941943|gb|AFN89688.1| RNA polymerase II, partial [Komagataella pastoris]
          Length = 771

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/771 (61%), Positives = 593/771 (76%), Gaps = 39/771 (5%)

Query: 315  AFVIQNQQVALDYIGKRG-ATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 373
             FVIQ+++VALD+IG+RG A +G+ R+KRI+YAK+ILQKE+LPH+   +  ET+K ++ G
Sbjct: 1    GFVIQDKEVALDFIGRRGSAALGIRREKRIQYAKDILQKELLPHITQEEGFETRKTFFLG 60

Query: 374  YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG 433
            Y+++RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+LFRKLTR++  Y+Q+C++  
Sbjct: 61   YMVNRLLLCALERKDQDDRDHFGKKRLDLAGPLLANLFRILFRKLTREIYRYMQRCIETD 120

Query: 434  KDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
            +D NL  A+K+ TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY+STLSHLRR N
Sbjct: 121  RDFNLNLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTN 180

Query: 493  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
            +PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+L+  I++GS + PI+ FLE
Sbjct: 181  TPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLSGISIGSPSEPIINFLE 240

Query: 553  EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
            EWG E  E+  PA   ++T+IFVNG W GIHRDP MLV T+R LRR   ++ EV ++RDI
Sbjct: 241  EWGMEPLEDYDPAQHTRSTRIFVNGVWTGIHRDPSMLVSTMRDLRRSGAISPEVSIIRDI 300

Query: 613  RLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQ-----------RESP 654
            R +E +I+TD GR  RPLFIVE       K  L I K  I  +QQ            E  
Sbjct: 301  REREFKIFTDVGRVYRPLFIVEDDESKDNKGELRITKEHIRKIQQGYDDDAMNDDSEEQE 360

Query: 655  EDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL--------------VQARLHPEEAY 699
            +D  GW  LV  G IEY+D EEEET MI+MT  DL                 R+ PE + 
Sbjct: 361  QDVYGWSSLVTSGVIEYVDGEEEETIMIAMTPEDLQTRSLEQKESDLNDTAKRIKPEMST 420

Query: 700  AD--TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
            +   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+
Sbjct: 421  SSHHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTM 480

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQKPL  T+AME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FR
Sbjct: 481  ANILYYPQKPLAKTQAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 540

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLFFRSY D+EK+ G  + E+F +P R+ T+ ++HG+Y+KLD+DGL  PG RVSG+D+II
Sbjct: 541  SLFFRSYMDQEKRFGISIVEEFEKPTRATTLRLKHGTYEKLDEDGLIAPGVRVSGDDIII 600

Query: 878  GKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKTTPI  D E  GQ ++Y T+RD S  LR +E G+VDQVLLTTN +GL+FVKVR+R+ +
Sbjct: 601  GKTTPIPPDTEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLKFVKVRMRTTK 660

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            +PQIGDKF+SRHGQKGT+G+TY  EDMP++ EGI PD+I+NPHAIPSRMT+  LIEC++ 
Sbjct: 661  VPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTVAHLIECLLS 720

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            KV +  G EGDATPFTD+TVD +S  L   GYQ RGFE MYNGHTG++L A
Sbjct: 721  KVGSIRGYEGDATPFTDLTVDAVSNLLRDNGYQSRGFEVMYNGHTGKKLMA 771


>gi|396941893|gb|AFN89664.1| RNA polymerase II, partial [Meyerozyma guilliermondii]
          Length = 786

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/787 (61%), Positives = 600/787 (76%), Gaps = 47/787 (5%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EE FVIQ ++VALD+IG+RGA +G+ R+KRI+YAK+ILQKE+LP++   +  E
Sbjct: 1    EMLKPCVEEGFVIQEREVALDFIGRRGA-LGIKREKRIQYAKDILQKELLPNITQDEGFE 59

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            T+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLT+D+  Y
Sbjct: 60   TRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNY 119

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +Q+CV+N K  NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+ST
Sbjct: 120  MQRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ +
Sbjct: 180  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPS 239

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR D++ 
Sbjct: 240  EPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISP 299

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG 657
            EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  I  L   E  E+ 
Sbjct: 300  EVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEY 359

Query: 658  ------------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHP 695
                        GW  LV  G +EY+D EEEET MI+MT  DL           Q  L  
Sbjct: 360  ATNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQL 419

Query: 696  EEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741
            EE   D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 420  EEQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQ 479

Query: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801
            AMG+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQE
Sbjct: 480  AMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQE 539

Query: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 861
            DS+IMNQSSIDRG FRSLFFR+Y D EK+ G    E F +P RS+T+ ++HG+Y+KLDDD
Sbjct: 540  DSMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDD 599

Query: 862  GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTT 919
            GL  PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTT
Sbjct: 600  GLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTT 659

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
            N DG +FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T +GI PD+I+NPHA
Sbjct: 660  NGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHA 719

Query: 980  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
            IPSRMT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MY+GH
Sbjct: 720  IPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYHGH 779

Query: 1040 TGRRLTA 1046
            TG++L A
Sbjct: 780  TGKKLMA 786


>gi|396941839|gb|AFN89637.1| RNA polymerase II, partial [Saccharomycodes ludwigii]
          Length = 782

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/782 (60%), Positives = 599/782 (76%), Gaps = 40/782 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ+++ ALD+IG RG+ +G+ ++KRI+  K+ILQKE LPH+   +  
Sbjct: 1    LEMLKPCVEEGFVIQDRETALDFIGXRGSAIGIKKEKRIQXVKDILQKEFLPHITQLEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E +KA++ GY+++RLLLCAL R+ +DD DH+G KRLDLAGPLL  LFR LF+KLTRD+  
Sbjct: 61   EGRKAFFXGYMVNRLLLCALDRKDQDDXDHFGKKRLDLAGPLLAQLFRTLFKKLTRDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            ++Q+ V+  KD NL+ A+KA T+T GLKY+LATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  FMQRSVEEAKDFNLKLAVKAXTLTXGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
              PI+ FL EWG E  E+  P   P AT++FVNG W GIHR+P  LV T+++LRRR D+ 
Sbjct: 241  PSPIITFLNEWGMEPLEDYVPYQSPDATRVFVNGVWHGIHRNPAKLVDTIKKLRRRGDIT 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-D 656
             EV +VRDIR KEL+I+TD GR  RPLF+VE       + L ++K  I  L   E  + +
Sbjct: 301  PEVSIVRDIREKELKIFTDAGRVYRPLFLVEDNEDTGIKELKVRKGHIRKLMITEYHDIE 360

Query: 657  GG----------------WHDLVAKGFIEYIDTEEEETTMISMTINDL---------VQA 691
            GG                W  L++ G +EYID EEEET +I+M   DL         ++ 
Sbjct: 361  GGFDEEDEDDDNEKTNYTWSSLLSDGLVEYIDAEEEETILIAMQREDLDPGISANPDLEE 420

Query: 692  RLHPEEA-----YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746
             L P        +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG++
Sbjct: 421  ELDPARRIKNIYHASTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVF 480

Query: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806
            +TNY FRMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IM
Sbjct: 481  LTNYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIM 540

Query: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 866
            NQSSIDRG FRSLFFRSY D+EK++G  + E F +P R+NT+ M+HG+YDKLDDDGL  P
Sbjct: 541  NQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLMSP 600

Query: 867  GTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 924
            G RVSG+D+IIGKTTPI+ D  E   + + +T+RD S  LR +E G++DQVL+TTN +GL
Sbjct: 601  GVRVSGDDIIIGKTTPIAPDTEELGLRTAFHTKRDASTPLRSTENGIIDQVLITTNQEGL 660

Query: 925  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 984
            +FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRM
Sbjct: 661  KFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRM 720

Query: 985  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            T+  LIEC++ KVAA  G EGDA+PFTD+TVD IS+ L + GYQ RGFE MYNGHTG++L
Sbjct: 721  TVAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKL 780

Query: 1045 TA 1046
             A
Sbjct: 781  MA 782


>gi|396941916|gb|AFN89675.1| RNA polymerase II, partial [Nadsonia fulvescens]
          Length = 782

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/780 (61%), Positives = 604/780 (77%), Gaps = 40/780 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EEAFVIQ+++VALDYIG+RG+ +G+ R+KR++YA++I+QKE+LPH+   +  
Sbjct: 1    LEMLKPCIEEAFVIQDREVALDYIGRRGSAMGINREKRVRYARDIMQKELLPHITQEEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KAY+ GY++HR+LLCAL R  +DDRDH+G KRLDLAGPLL  LFRMLF+KLT+D+  
Sbjct: 61   ETRKAYFLGYMVHRMLLCALERADQDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  KD NL  A+KA TIT+GLKYSLATGNWG Q  A   RAGVSQVLNR T++S
Sbjct: 121  YMQKCVETNKDFNLTLAVKANTITNGLKYSLATGNWGDQKKAMSARAGVSQVLNRYTFSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMACISVGSP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI+ FLEEWG E  E+  P   P +T+IFVNG W+G+HR+P  LV+T++ LRR+ D+ 
Sbjct: 241  SQPIVYFLEEWGMEPLEDYVPHASPNSTRIFVNGVWIGVHREPAHLVETMKTLRRKGDIG 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIAL---QQRES 653
            +EV +VRDIR KE +I+TD GR  RPLF+V+       K  L++KK  I  L   Q R+ 
Sbjct: 301  SEVSIVRDIRNKEFKIFTDAGRVYRPLFLVDSNPESERKGELMLKKEHIYQLMNNQDRDI 360

Query: 654  PEDG--------GWHDLVAKGFIEYIDTEEEETTMISMTINDL------------VQARL 693
             +D          W+ LV  G +EYID EEEET MI+MT  DL             +  L
Sbjct: 361  DDDNYEAYDDVFTWNSLVGNGIVEYIDGEEEETVMIAMTPEDLELSKQAQTGVQVAEEEL 420

Query: 694  HPEE-------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746
             P +       + + T+THCEIHPS++LG+ ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y
Sbjct: 421  DPAKRVRRTFNSQSHTWTHCEIHPSMVLGILASIIPFPDHNQSPRNTYQSAMGKQAMGVY 480

Query: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806
            +TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDS+IM
Sbjct: 481  LTNYSVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSMIM 540

Query: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 866
            N SSIDRG FRSLFFRSY D+E+++G  V E+F RP R++T+ ++HG+YDKLDDDGL  P
Sbjct: 541  NXSSIDRGLFRSLFFRSYMDQERRIGMSVVEEFXRPTRADTLRLKHGTYDKLDDDGLXXP 600

Query: 867  GTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGL 924
            G RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVLLTTN +GL
Sbjct: 601  GVRVSGEDIIIGKTAPIPADAEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEGL 660

Query: 925  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 984
            RFV VR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP++ +G+ PD+I NPHAIPSRM
Sbjct: 661  RFVXVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSPQGVVPDLIXNPHAIPSRM 720

Query: 985  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            T+  LIEC++ KV++  G EGDATPFTDVTVD ISK L + GY  RGFE MYNGHTG++L
Sbjct: 721  TVAHLIECLLXKVSSLSGLEGDATPFTDVTVDAISKLLREHGYHSRGFEVMYNGHTGKKL 780


>gi|396941835|gb|AFN89635.1| RNA polymerase II, partial [Kluyveromyces marxianus]
          Length = 765

 Score =  999 bits (2582), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/765 (62%), Positives = 595/765 (77%), Gaps = 34/765 (4%)

Query: 316  FVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 375
            FVIQ+++ ALD+IG+RG  +G+ ++KRI+YAK+ILQKE LPH+   +  E++KA++ GY+
Sbjct: 1    FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 60

Query: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 435
            I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LF+ LFRKLTRD+  ++Q+ V+  KD
Sbjct: 61   INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKD 120

Query: 436  VNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
             NL+ A+KA TIT+GLKY+LATGNWG Q  +  +RAGVSQVLNR TY+STLSHLRR N+P
Sbjct: 121  FNLKLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 180

Query: 495  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
            IGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+   PI+ FL EW
Sbjct: 181  IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEW 240

Query: 555  GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
            G E  E+  P   P AT++FVNG W GIHR+P  LV T+R+LRR+ D+  EV +VRDIR 
Sbjct: 241  GMEPLEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDITPEVSIVRDIRE 300

Query: 615  KELRIYTDYGRCSRPLFIVE------KQRLLIKKRDIIALQQRESPE-DGG--------- 658
            KEL+I+TD GR  RPLFIV+      ++ L +KK  +  L   E  + +GG         
Sbjct: 301  KELKIFTDAGRVYRPLFIVDENTKTGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNY 360

Query: 659  -WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQARLHPEEA-----------YADTY 703
             W  L+ +G +EYID EEEET +I+M   DL   VQ     EE            +A+ +
Sbjct: 361  TWTSLLNEGLVEYIDAEEEETILIAMQHEDLEPAVQQATETEEELDPARRIRAAHHANMF 420

Query: 704  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            THCEIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYY
Sbjct: 421  THCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYY 480

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLFFRS
Sbjct: 481  PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 540

Query: 824  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 883
            Y D+EK++G  + E F +P R+NT+ M+HG+YDKLDDDGL  PG RVSG+D+IIGKTTPI
Sbjct: 541  YMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPI 600

Query: 884  SQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGD 941
              D E  GQ + + ++RD S  LR +E G+VDQVL+TTN +GL+FVKVRVR+ ++PQIGD
Sbjct: 601  PPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQIGD 660

Query: 942  KFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1001
            KF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC++ KVAA  
Sbjct: 661  KFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 720

Query: 1002 GKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            G EGDA+PFTD+TVD IS+ L + GYQ RGFE MYNGHTG++L A
Sbjct: 721  GNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMA 765


>gi|83415503|gb|ABC17959.1| RNA polymerase II second largest subunit, partial [Rhizophagus
            intraradices]
          Length = 764

 Score =  998 bits (2581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/763 (63%), Positives = 577/763 (75%), Gaps = 67/763 (8%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KR+DLAGPLL  LFRMLF+KLT+DV AY++KC+D  ++ NL  AIKA+TIT+GLKYSLAT
Sbjct: 2    KRMDLAGPLLASLFRMLFKKLTKDVSAYLRKCIDGNREFNLNLAIKAQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A  +RAGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-EEISPAVIPQATKIFV 575
            P+ETPEGQACGLVKNL+LM YI+VGSA+ PI++FLEE+G  N  ++  PA I    K+FV
Sbjct: 122  PSETPEGQACGLVKNLSLMSYISVGSASKPIIDFLEEYGMINLNQQFDPANIRDNAKVFV 181

Query: 576  NGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK 635
            NG WVGI   PE L  TL+ LRR VDV+ EV VVRDIR KELRIYTD GR  RPLFIVE 
Sbjct: 182  NGKWVGISSSPEQLSYTLKGLRRTVDVSPEVSVVRDIREKELRIYTDAGRVCRPLFIVES 241

Query: 636  QRLLIKKRDIIAL-------QQRES----------------------PEDG--------- 657
             RL I K  I  L       Q  ES                      PE           
Sbjct: 242  ARLKITKGLIQKLDKNRQAGQVEESDDDLFDDDENIDDDMEEEDIDNPEQPSRRRRKKKK 301

Query: 658  ---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYAD------------- 701
               GW +L++   +EYID EEEET MI MT  DL  +R+  E                  
Sbjct: 302  SSFGWQELISNSVVEYIDAEEEETVMICMTPEDLASSRVFHETGEVKQEKAHERDIAARV 361

Query: 702  ---------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 752
                     T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+Q 
Sbjct: 362  KTDTNLKIYTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNHQL 421

Query: 753  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 812
            RMDTLA +LYYPQKP+VTTRAME L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSID
Sbjct: 422  RMDTLANILYYPQKPVVTTRAMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSID 481

Query: 813  RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 872
            RG FRS+F+RSY D+EKK+G L  E+F +P +  T+ ++HG+Y+KL+DDGL  PGTRVSG
Sbjct: 482  RGLFRSIFYRSYMDQEKKVGMLTIEEFEKPTKETTLRLKHGTYEKLEDDGLIAPGTRVSG 541

Query: 873  EDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 930
            +D+IIGK TPIS +  E   + + +T+RD S  +R +ETG+VDQV++TTNA+G++FVKVR
Sbjct: 542  DDIIIGKVTPISNETLELGQRQTTHTQRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVR 601

Query: 931  VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 990
            VRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+++NPHAIPSRMTIG L+
Sbjct: 602  VRSTRVPQMGDKFASRHGQKGTIGITYRQEDMPFTAEGIAPDLVINPHAIPSRMTIGHLV 661

Query: 991  ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 1050
            EC++GKV+   G+EGDATPFTDVTV+ IS++L   GYQ RGFE MYNGHTGR+L A +FL
Sbjct: 662  ECLLGKVSTLTGQEGDATPFTDVTVEAISQSLRLQGYQSRGFEVMYNGHTGRKLAAQVFL 721

Query: 1051 GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 722  GPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 764


>gi|396941803|gb|AFN89619.1| RNA polymerase II, partial [Ambrosiozyma monospora]
          Length = 785

 Score =  998 bits (2581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/785 (60%), Positives = 602/785 (76%), Gaps = 43/785 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE F+IQ+Q+VALDYIG+RG  VG+ RD+RI++AK+ILQ+E LPH+      
Sbjct: 1    LEMLKPCIEEGFLIQSQEVALDYIGRRGNAVGIKRDRRIQFAKDILQREFLPHISQDSGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET KAYY GYII+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+LFRKL+RD+  
Sbjct: 61   ETNKAYYLGYIINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRVLFRKLSRDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+C++ G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  ++AGVSQVLNR TY+S
Sbjct: 121  YMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  ++VGS+
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCVSVGSS 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI   LEEWG E   +  P     AT++F+NG WVG HRDP +LV+T+++LRR   ++
Sbjct: 241  SEPITYLLEEWGLEPLSDYDPHDHKNATRVFLNGNWVGNHRDPALLVETMKQLRRNGTIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK---RDIIALQQRES 653
             EV ++RDIR +E +I+TD GR  RPLFIV+       K  LL+ K   R I+  +  E 
Sbjct: 301  PEVSLIRDIREREFKIFTDAGRIYRPLFIVDNSEDSENKGGLLLTKEHCRKILEREVEEI 360

Query: 654  PEDG----------------GWHDLVAKGFIEYIDTEEEETTMISMTINDLV-------- 689
            P+D                 GW  LV+ G +EY+D EEEET +I+M+  DL+        
Sbjct: 361  PQDDEFDEDGEALPPIERIFGWDSLVSGGVVEYLDAEEEETVLIAMSPEDLIPVSDQDRQ 420

Query: 690  -QARLHPEE-----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
             +  L P +      ++  +THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 421  KEYELDPAKRIKSVVHSQAFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 480

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+++TNY  RMDT+A +LYYPQKPL  T+AME+L FR+LPAG NAIVAI CYSGYNQEDS
Sbjct: 481  GVFLTNYSVRMDTMANILYYPQKPLAKTQAMEYLKFRELPAGQNAIVAICCYSGYNQEDS 540

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            +IMNQSSIDRG FRSLFFRSY D+E++ G  V E+F +P RS+T+G + G+Y+KLDDDGL
Sbjct: 541  MIMNQSSIDRGLFRSLFFRSYMDQERRNGISVVEEFEKPMRSSTLGFKAGTYEKLDDDGL 600

Query: 864  APPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVLLTTNA
Sbjct: 601  ISPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTENGIVDQVLLTTNA 660

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +GL+FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP+T +GI PD+I+NPHAIP
Sbjct: 661  EGLKFVKVRMRTTKVPQIGDKFASRHGQKGTVGITYRHEDMPFTAQGIVPDLIINPHAIP 720

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMT+  LIEC++ K+ +  G EGDATPFTD+TVD +S+ L + GYQ RGFE +YNGHTG
Sbjct: 721  SRMTVAHLIECLLSKIGSLRGYEGDATPFTDLTVDAVSRLLRENGYQSRGFEVLYNGHTG 780

Query: 1042 RRLTA 1046
            ++L A
Sbjct: 781  KKLMA 785


>gi|83415501|gb|ABC17958.1| RNA polymerase II second largest subunit, partial [Boothiomyces
            macroporosum]
          Length = 714

 Score =  997 bits (2578), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/717 (66%), Positives = 570/717 (79%), Gaps = 25/717 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLLGGLFRMLF+KLT+D+  YVQK ++ GK+ NL  A+K+  IT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLGGLFRMLFKKLTKDISKYVQKSMELGKEFNLSLAVKSGIITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q      RAGVSQVLNR T+ASTLSHLRRLN+PIGR+GKLAKPRQLH++ WGM+C
Sbjct: 62   GNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRLNTPIGRDGKLAKPRQLHDTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNL+LM YITVGSA+ P+LEFL+EW  E+ E+I+P  IP ATK+F+N
Sbjct: 122  PAETPEGQACGLVKNLSLMAYITVGSASRPVLEFLDEWTMESLEDINPGQIPSATKVFLN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-K 635
            G WVG+HR P+ LV  LR LRR +D++ EV VV D+R KELRIYTD GR  R LFIV  +
Sbjct: 182  GAWVGVHRYPDELVNNLRTLRRSLDISPEVSVVHDVRDKELRIYTDPGRICRSLFIVSPE 241

Query: 636  QRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHP 695
            QRLL+ K  + AL  +E      W+DL+A G +EYIDTEEEET MI M+  DL+ ARL  
Sbjct: 242  QRLLLTKPIVEALNSKEMT----WNDLLANGIVEYIDTEEEETIMIVMSPEDLMDARLAV 297

Query: 696  E---------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 740
            +                 YA  YTHCEIHPS+ILG+CASIIPFPDHNQSPRN YQSAMGK
Sbjct: 298  QGQQITQQEGHQRLKSAVYARNYTHCEIHPSMILGICASIIPFPDHNQSPRNVYQSAMGK 357

Query: 741  QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 800
            QAMGI++TN+Q RMDT+  +L+YPQKPL TT+AM +++F +LPAG N +VAIACY+GYNQ
Sbjct: 358  QAMGIFLTNFQMRMDTMGNILFYPQKPLATTQAMRYMNFGELPAGQNVVVAIACYTGYNQ 417

Query: 801  EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 860
            EDS+IMNQSSIDRG FRSL++R Y D+EKK G L  E   +P R  T+ M+HGSYDKL+D
Sbjct: 418  EDSLIMNQSSIDRGMFRSLYYRVYMDQEKKSGLLESECIEKPTRDTTLRMKHGSYDKLED 477

Query: 861  DGLAPPGTRVSGEDV--IIGKTTPISQDEAQ-GQAS-RYTRRDHSISLRHSETGMVDQVL 916
            DGL  PG RVSGED+  IIGKT PI ++  + GQ +  +T+RD S  L+ +E G+VD V+
Sbjct: 478  DGLIAPGVRVSGEDIDIIIGKTVPIPENSVELGQRTVNHTKRDASTPLKSTENGIVDNVM 537

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            +TTN DG +FVKVR+RS+RIPQ+GDKF+SRHGQKGTVG+TY  EDMP+T +GITPD+I+N
Sbjct: 538  VTTNQDGFKFVKVRIRSIRIPQMGDKFASRHGQKGTVGITYRTEDMPFTADGITPDLIIN 597

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1036
            PHAIPSRMTIG L+EC++ KV+   G EGDATPFTDVTV+ IS+AL   GYQ RGFE +Y
Sbjct: 598  PHAIPSRMTIGHLVECLLSKVSTFTGNEGDATPFTDVTVEAISQALAAQGYQRRGFEVLY 657

Query: 1037 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            NGHTGR+L A I+ GPTYYQRLKHMVDDKIHSR RGP+QILTRQP EGRSRDGGLRF
Sbjct: 658  NGHTGRKLNAQIYTGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 714


>gi|396941847|gb|AFN89641.1| RNA polymerase II, partial [Pichia membranifaciens]
          Length = 785

 Score =  996 bits (2575), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/785 (60%), Positives = 600/785 (76%), Gaps = 43/785 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE F+IQ+Q+VALDYIG+RG  VG+ R++RI++AK+ILQ+E LPH+      
Sbjct: 1    LEMLKPCIEEGFLIQSQEVALDYIGRRGNAVGIKRERRIQFAKDILQREFLPHISQDGGH 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET KAY+ GYII+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+LFRKL+RD+  
Sbjct: 61   ETNKAYFMGYIINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYK 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+C+++G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  ++AGVSQVLNR TY+S
Sbjct: 121  YMQRCIEHGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGSA
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSA 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI   LEEWG E   +  P     +T++F+NG WVG HRDP MLV T+R+LRR   ++
Sbjct: 241  SEPITYLLEEWGLEPISDYDPQEHKLSTRVFLNGDWVGTHRDPGMLVDTMRQLRRSGTIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK---RDIIALQQRES 653
             EV ++R+IR +E +I+TD GR  RPLFIV+       K  L + K   R I+  +  E 
Sbjct: 301  AEVSLIRNIREREFKIFTDAGRVYRPLFIVDDDPDSERKGGLKLTKEHCRRILDREIEEI 360

Query: 654  PEDGG----------------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQ------- 690
            P+D G                W  L+A+G +EY+D EEEET +I+M+  DL         
Sbjct: 361  PQDDGFDENGDPLDPIQRIYGWDSLLAEGVVEYLDAEEEETVLIAMSSEDLSPVDEEDEM 420

Query: 691  -------ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
                   A+       A ++THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 421  KDLEADPAKRIKNHINAHSFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 480

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+++TNY  RMDT+A +LYYPQKPL  T++ME L FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 481  GVFLTNYNVRMDTMANILYYPQKPLAKTQSMEFLKFRELPAGQNAIVAIACYSGYNQEDS 540

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            +IMNQSSIDRG FRSLFFRSY D+E++ G  + E+F +P RSNT+G + G+Y+KLDDDGL
Sbjct: 541  MIMNQSSIDRGLFRSLFFRSYMDQERRNGISIVEEFEKPMRSNTLGFKAGTYEKLDDDGL 600

Query: 864  APPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTNA
Sbjct: 601  ISPGVRVSGDDIIIGKTVPIPTDTEELGQRTKYHTKRDASTPLRTTESGIVDQVLLTTNA 660

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +GL+FVKVR+R+ + PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPHAIP
Sbjct: 661  EGLKFVKVRMRTTKTPQIGDKFASRHGQKGTIGITYRNEDMPFTAEGVVPDLIINPHAIP 720

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +SK L + GYQ RGFE MYNGHTG
Sbjct: 721  SRMTVAHLIECLLSKVASLRGYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVMYNGHTG 780

Query: 1042 RRLTA 1046
            ++L A
Sbjct: 781  KKLMA 785


>gi|396941797|gb|AFN89616.1| RNA polymerase II, partial [Ogataea methanolica]
          Length = 784

 Score =  996 bits (2575), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/784 (60%), Positives = 600/784 (76%), Gaps = 43/784 (5%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EE F+IQ+Q+VALDYIG+RG  VG+ R++RI++AK+ILQ+E LPH+      E
Sbjct: 1    EMLKPCIEEGFLIQSQEVALDYIGRRGNAVGIRRERRIQFAKDILQREFLPHISQDTGFE 60

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            T KAYY GYII+RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKL+RD+  Y
Sbjct: 61   TNKAYYLGYIINRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRY 120

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +Q+C++ G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY+ST
Sbjct: 121  MQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 180

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  ++VG+++
Sbjct: 181  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCVSVGTSS 240

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PI   LEEWG E   E  P     AT++F+NG WVG HRDP MLV+T+++LRR   ++ 
Sbjct: 241  EPITYLLEEWGLEPLSEYEPQEHKNATRVFLNGNWVGTHRDPGMLVETMKQLRRSGTISP 300

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK---RDIIALQQRESP 654
            EV ++RDIR +E +I+TD GR  RPLFIV+       K  L + K   R I+  +  E P
Sbjct: 301  EVSLIRDIREREFKIFTDAGRIYRPLFIVDDDQDSEHKGELKLNKEHCRKILEREVEEIP 360

Query: 655  ------EDG----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLV--------- 689
                  EDG          GW  L++ G IE++D EEEET +I+M+  DL+         
Sbjct: 361  QDEEYDEDGEPLEPIQRVFGWESLLSSGVIEFLDAEEEETVLIAMSPEDLIPVVEQDKQK 420

Query: 690  QARLHP-----EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
            Q  ++P         A  +THCE+HPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 421  QVEMNPGARIKSVTKAHAFTHCEVHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 480

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            +++TNY  RMDT+A +LYYPQKPL  T+AME+L FR+LPAG NAIVAI CYSGYNQEDS+
Sbjct: 481  VFLTNYSVRMDTMANILYYPQKPLAKTQAMEYLKFRELPAGQNAIVAICCYSGYNQEDSM 540

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRSLFFRSY D+E++ G  V E+F +P RS+T+G + G+Y+KLDDDGL 
Sbjct: 541  IMNQSSIDRGLFRSLFFRSYMDQERRNGISVVEEFEKPLRSSTLGFKAGTYEKLDDDGLI 600

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 922
             PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTNA+
Sbjct: 601  SPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTESGIVDQVLLTTNAE 660

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            GL+FVKVR+R+ + PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPS
Sbjct: 661  GLKFVKVRMRTTKTPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGIVPDLIINPHAIPS 720

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMT+  LIEC++ KVA+  G EGDATPFTD+TVD +SK L + GYQ RGFE MY+GHTG+
Sbjct: 721  RMTVAHLIECLLSKVASLRGYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVMYHGHTGK 780

Query: 1043 RLTA 1046
            +L A
Sbjct: 781  KLMA 784


>gi|396941853|gb|AFN89644.1| RNA polymerase II, partial [Kodamaea ohmeri]
          Length = 766

 Score =  995 bits (2572), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/767 (62%), Positives = 594/767 (77%), Gaps = 34/767 (4%)

Query: 313  EEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 372
            EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  ET+KA++ 
Sbjct: 1    EEGFVIQEREVALDFIGRRGV-MGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFL 59

Query: 373  GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 432
            GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  Y+Q+CV+N
Sbjct: 60   GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYMQRCVEN 119

Query: 433  GKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRL 491
             K+ NL  A+K++TIT GL+YSLATGNWG Q  A   RAGVSQVLNR TY+STLSHLRR 
Sbjct: 120  DKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTLSHLRRT 179

Query: 492  NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 551
            N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+   PIL FL
Sbjct: 180  NTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPLEPILYFL 239

Query: 552  EEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRD 611
            EEWG E  E+  P   P +T++FVNG W+G HR+P  LV+T+R LRRR D++ EV ++RD
Sbjct: 240  EEWGMEPLEDYVPLNSPDSTRVFVNGVWLGTHREPAQLVETMRNLRRRGDISPEVSIIRD 299

Query: 612  IRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPE--DG-GWHD 661
            IR KE +I+TD GR  RPLFIV+       K  + ++K  +  L   E  +  DG  W  
Sbjct: 300  IREKEFKIFTDAGRVYRPLFIVDDDPDSPTKGDIKLEKEHVNKLLSSEYDDEYDGYTWSL 359

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHP------------------EEAYAD-- 701
            LV  G IEY+D EEEET MI+MT  DL  A+L                    ++AY+   
Sbjct: 360  LVNDGVIEYVDAEEEETIMIAMTPEDLEAAKLSKTDVKIEEIEEELDAAKRIKQAYSSSH 419

Query: 702  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
            T+THCEIHPS+ILGV A IIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +L
Sbjct: 420  TFTHCEIHPSMILGVAALIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYAVRMDTMANIL 479

Query: 762  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
            YYPQKPL TTRAMEHL FR+LPAG NA+VAIACYSGYNQEDS+IMNQSSIDRG FRSLFF
Sbjct: 480  YYPQKPLATTRAMEHLKFRELPAGQNAVVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFF 539

Query: 822  RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
            RSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  PG RVSGED+IIGKTT
Sbjct: 540  RSYMDLEKRQGMKALESFEKPTRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTT 599

Query: 882  PISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
            PI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +FVKVR+R+ +IPQI
Sbjct: 600  PIPPDTEELGQRTQYHTKRDASTPLRATESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQI 659

Query: 940  GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
            GDKF+SRHGQKGT+G+TY  EDMP++ +GI PD+I+NPHAIPSRMT+  LIEC++ KV++
Sbjct: 660  GDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPDLIINPHAIPSRMTVAHLIECLLLKVSS 719

Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
              G EGDA+PFTDVT + ISK L + GYQ RGFE MYNGHTG++L A
Sbjct: 720  LSGLEGDASPFTDVTAEAISKLLREHGYQSRGFEVMYNGHTGKKLMA 766


>gi|396941911|gb|AFN89673.1| RNA polymerase II, partial [Pachysolen tannophilus]
          Length = 792

 Score =  994 bits (2571), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/792 (59%), Positives = 596/792 (75%), Gaps = 50/792 (6%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EEAFVIQ+++ ALD+IG+RG  +G+ R+KRI+YAK+ILQKE LPH+   +  
Sbjct: 1    LEMLKPCVEEAFVIQDRETALDFIGRRGNALGIRREKRIQYAKDILQKEFLPHITQDEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPL+  LFR+LFRKLT+D+  
Sbjct: 61   ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLMANLFRILFRKLTKDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  +D NL  A+++ TIT+GLKYSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQKCVETNRDFNLTLAVRSNTITAGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            +  IL +LEEWG E  E+  P   P+A +IFVNG WVG HR+P  L K ++ LRR+ D++
Sbjct: 241  SDAILLYLEEWGMEPVEDFVPHDSPEAVRIFVNGVWVGTHREPADLTKAIKDLRRQGDIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIAL----QQRE 652
             EV +VRDIR KE +I+TD GR  RPLF+VE       K  L ++K  +  L     + +
Sbjct: 301  PEVSIVRDIREKEFKIFTDAGRVYRPLFVVEDDENSEHKGELKLRKSHVNKLLNPVDEDD 360

Query: 653  SPEDG----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE------ 696
              E+G          GW  LV  G IEY+D EEEET MI+M I+DL+ A+ + E      
Sbjct: 361  YMENGDEEEHEGAIYGWSSLVNNGVIEYVDAEEEETIMIAMQIDDLIAAKHNQEHNIQRE 420

Query: 697  --------------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
                                     T+THCEIHP++ILGV ASIIPFPDHNQSPRNTYQS
Sbjct: 421  VEELNNGDDIDAAKRIKPSLSGTTHTFTHCEIHPAMILGVAASIIPFPDHNQSPRNTYQS 480

Query: 737  AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
            AMGKQAMG++ TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI+CYS
Sbjct: 481  AMGKQAMGVFATNYNVRMDTMANILYYPQKPLGTTRSMEFLRFRELPAGQNAIVAISCYS 540

Query: 797  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYD 856
            GYNQEDS+IMNQSSIDRG FRSLFFRSY D+E + G  V  +F +P RS+T+G + G+Y+
Sbjct: 541  GYNQEDSMIMNQSSIDRGLFRSLFFRSYSDQETRSGMSVLAEFEKPHRSDTLGFKQGTYE 600

Query: 857  KLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQ 914
            KLDDDGL  PG RVSG D+IIGKT PI  D E  GQ ++Y T+RD S+ LR +E G+VDQ
Sbjct: 601  KLDDDGLIAPGVRVSGADIIIGKTIPIQPDSEELGQRTKYHTKRDASMPLRTTENGIVDQ 660

Query: 915  VLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 974
            VLLTTN +GL+FVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EG+ PD+I
Sbjct: 661  VLLTTNQEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFSSEGVVPDLI 720

Query: 975  VNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFET 1034
            +NPHAIPSRMT+  LIEC++ KV++  G EGDATPFTD+TV+ +SK L + GY  RGFE 
Sbjct: 721  INPHAIPSRMTVAHLIECLLSKVSSMTGMEGDATPFTDLTVEQVSKLLRENGYHSRGFEV 780

Query: 1035 MYNGHTGRRLTA 1046
            MYNGHTG++L A
Sbjct: 781  MYNGHTGKKLMA 792


>gi|396941869|gb|AFN89652.1| RNA polymerase II, partial [Lodderomyces elongisporus]
          Length = 784

 Score =  993 bits (2568), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/785 (61%), Positives = 595/785 (75%), Gaps = 45/785 (5%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EE FVIQ ++VALD+IG+RG  +G+  +KRI+YAK+ILQKE+LP++   +  E
Sbjct: 1    EMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRXEKRIQYAKDILQKELLPNITQEEGFE 59

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            T+KA+  GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLT+D+  Y
Sbjct: 60   TRKAFXLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNY 119

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +Q+CV+N K+ NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+ST
Sbjct: 120  MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ +
Sbjct: 180  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPS 239

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PIL FL +WG E   + +PA  P  T++FVNG WVG+H +P  LV  +R LRR  D++ 
Sbjct: 240  DPILSFLRDWGLEPXXDYTPANSPDVTRVFVNGVWVGVHXEPASLVDYMRDLRRNGDISP 299

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQR------ 651
            EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +  L +       
Sbjct: 300  EVSLIRDIRXKEFKIFTDAGRVYRPLFIVDDKPDSATKGDLKLQKEHVNQLLESSYEGYD 359

Query: 652  ESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPEE 697
            E  ED      W  LV +G +EY+D EEEET MI+MT +DL           Q  L  EE
Sbjct: 360  EDXEDAAPKYTWSSLVKEGIVEYVDAEEEETIMIAMTPDDLEASKSSLTETQQQNLQMEE 419

Query: 698  AYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
               D              T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 420  QELDPAKRIKPTNSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 479

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 480  GVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDS 539

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            +IMNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL
Sbjct: 540  MIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGL 599

Query: 864  APPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG D+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN 
Sbjct: 600  IAPGVRVSGXDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNG 659

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            DG +FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPHAIP
Sbjct: 660  DGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSEGVVPDLIINPHAIP 719

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMT+  LIEC++ KV+A  G EGDA+PFTDVT + +SK L + GYQ RGFE MYNGHTG
Sbjct: 720  SRMTVAHLIECLLSKVSALSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYNGHTG 779

Query: 1042 RRLTA 1046
            ++L A
Sbjct: 780  KKLMA 784


>gi|396941809|gb|AFN89622.1| RNA polymerase II, partial [Saccharomycopsis capsularis]
          Length = 773

 Score =  992 bits (2565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/773 (60%), Positives = 599/773 (77%), Gaps = 31/773 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+PS+EEAFVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LPH+   +  
Sbjct: 1    LEMLKPSIEEAFVIQEREVALDFIGRRGNVIGIRREKRIQYAKDILQKELLPHITRDEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY++++LL+CAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKL+RD+  
Sbjct: 61   ESRKAFFLGYMVNKLLMCALERKEPDDRDHFGKKRLDLAGPLLAKLFRLLFRKLSRDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+  +D NL  AI+  TIT GL+YSLATGNWG Q  A   +AGVSQVLNR TY+S
Sbjct: 121  YMQRCVETNRDFNLSLAIRPSTITDGLRYSLATGNWGEQKKAMSAKAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHNS WG++CPAETPEGQACGLVKNL+LM  I+VGS+
Sbjct: 181  TLSHLRRTNTPIGRDGKIAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMTCISVGSS 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            +  I+E+LEEWG +  E+  P    ++T+IFVNG WVG+ +D  ++ + LR LRR+ D+N
Sbjct: 241  SDAIVEYLEEWGMDPLEDYVPHKDTKSTRIFVNGVWVGVQKDASIIDEALRGLRRKGDIN 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG------ 657
             EV +VR++R KE +I+TD GR  RPLF+VE+ RL ++K+ +  L   ++  DG      
Sbjct: 301  PEVSIVRNVREKEFKIFTDAGRVYRPLFVVEEGRLKLEKKHVSMLMDTQARADGLLEEDE 360

Query: 658  -------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR--------LHPEE----- 697
                    W  LV  G IEYID EEEETTMI+M+  DL  +         + P +     
Sbjct: 361  DDQTENFTWSSLVNNGIIEYIDAEEEETTMIAMSPEDLENSNDIMENNQLVDPAQRIKIK 420

Query: 698  --AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
              +   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMD
Sbjct: 421  HSSNKQTWTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYGVRMD 480

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL TTR+ME+L FR LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG 
Sbjct: 481  TMANILYYPQKPLATTRSMEYLKFRDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGL 540

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLFFRSY D+E++ G    E+F +P RSNT+ ++ G+Y+KLD+DGL  PG RVSG DV
Sbjct: 541  FRSLFFRSYMDQERREGMNFVEEFEKPLRSNTLRLKQGTYEKLDEDGLIAPGVRVSGGDV 600

Query: 876  IIGKTTPI-SQDEAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            IIGKT PI   +E  GQ +++ T+RD S +LR +E G+VDQVLLTTN +GL+F KVR+R+
Sbjct: 601  IIGKTAPIPPNNEELGQRTKFHTKRDASTALRITENGIVDQVLLTTNQEGLKFSKVRMRT 660

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+++NPHAIPSRMT+  LIEC+
Sbjct: 661  TKIPQIGDKFASRHGQKGTIGITYRHEDMPFTAEGIVPDLVINPHAIPSRMTVAHLIECL 720

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            + KV++  G EGDA+PFTDVTV+ IS+ L + GYQ RGFE +Y+GHTG++L A
Sbjct: 721  LSKVSSLTGLEGDASPFTDVTVEAISELLRQHGYQSRGFELLYHGHTGKKLMA 773


>gi|396941805|gb|AFN89620.1| RNA polymerase II, partial [Candida boidinii]
          Length = 783

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/784 (60%), Positives = 596/784 (76%), Gaps = 43/784 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE F+IQ Q+VALD+IG+RG  +G+ R+KRI+YAK+ILQ+E LPH+      
Sbjct: 1    LEMLKPCIEEGFLIQTQEVALDFIGRRGNAIGIPRNKRIQYAKDILQREFLPHISQDSGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET KAYY GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL GLFR+LFRKLTRD+  
Sbjct: 61   ETNKAYYLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLAGLFRVLFRKLTRDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+C++  +D N+  A+K+ TITSGLKYSLATGNWG Q  A  ++AGVSQVLNR TYAS
Sbjct: 121  YMQRCIERSEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYAS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+ IGR+ KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS 
Sbjct: 181  TLSHLRRTNTSIGRDSKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTGISVGSP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI   LEEWG E  ++  P     AT++F+NG WVG+ RDP MLV+T+R+LRR   ++
Sbjct: 241  SEPITYLLEEWGLEPLQDYEPQH-KHATRVFLNGNWVGVTRDPAMLVQTMRQLRRTGSIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK--------RDIIAL 648
             EV ++RDIR +E +I+TD GR  RPLFIVE       K  L + K        R+I  +
Sbjct: 300  PEVSLIRDIREREFKIFTDAGRVYRPLFIVEDNEQHERKGELKLTKSHCRKILDREIYEV 359

Query: 649  QQRESPEDG----------GWHDLVAKGFIEYIDTEEEETTMISMTINDL---------V 689
             Q    E+G          GW  LV  G IEY+D EEEETT+I+M+  DL         V
Sbjct: 360  SQEGYDENGDPLPPIQSTFGWDYLVTNGIIEYLDAEEEETTLIAMSPEDLSPVIETDKQV 419

Query: 690  QARLHPEE-----AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
               L P +       A  +THCEIHPS++LGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 420  TNELDPAKRIKNIVNAHAFTHCEIHPSMVLGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 479

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            ++ TNY  RMDT+A +LYYPQKPL  T++ME+L FR+LPAG NA+VAIACYSGYNQEDS+
Sbjct: 480  VFATNYNVRMDTMANILYYPQKPLAKTQSMEYLKFRELPAGQNAVVAIACYSGYNQEDSM 539

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRSLFFRSY D+E++ G  V E+F +P RSNT+G++  +Y+KLDDDGL 
Sbjct: 540  IMNQSSIDRGLFRSLFFRSYMDQERRNGISVVEEFEKPMRSNTLGLKASTYEKLDDDGLI 599

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 922
             PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVLLTTN++
Sbjct: 600  SPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTENGIVDQVLLTTNSE 659

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPS
Sbjct: 660  GLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRNEDMPFTAQGIVPDLIINPHAIPS 719

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMT+  LIEC++ KVA+  G EGDATPFTD+TVD +S+ L + GYQ RGFE +YNGHTG+
Sbjct: 720  RMTVAHLIECLLSKVASLRGYEGDATPFTDLTVDAVSRLLRENGYQSRGFEVLYNGHTGK 779

Query: 1043 RLTA 1046
            +L A
Sbjct: 780  KLMA 783


>gi|56694334|gb|AAW22907.1| RNA polymerase II second largest subunit [Araucaria araucana]
          Length = 523

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/526 (88%), Positives = 498/526 (94%), Gaps = 3/526 (0%)

Query: 542  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
            S+A PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDPE+LV+TLR+LRR+VD
Sbjct: 1    SSANPILEFLEEWSTENFEEISPAVIPTATKIFVNGCWVGIHRDPELLVRTLRQLRRQVD 60

Query: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 661
            VN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK+DI  L  R++PE+G WH+
Sbjct: 61   VNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIKKKDINEL--RQNPEEG-WHE 117

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
            LV KGFIEY+DTEEEE TMISMTINDLV AR +PE+AY+ TYTHCEIHPSLILGVCASII
Sbjct: 118  LVNKGFIEYVDTEEEEXTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLILGVCASII 177

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAY LYYPQKPLVTTRAMEHLHFRQ
Sbjct: 178  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYXLYYPQKPLVTTRAMEHLHFRQ 237

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+FGR
Sbjct: 238  LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGR 297

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 901
            P+R NT G RHGS DKLD+DGLAPPGTRVSGEDVIIGKTTPI+QDE  GQ SR++RRD S
Sbjct: 298  PNRENTXGXRHGSXDKLDEDGLAPPGTRVSGEDVIIGKTTPITQDEQGGQLSRFSRRDQS 357

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
             SLRHSE+GMVDQVLLTTN DGLRFVK+R+RSVRIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 358  TSLRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 417

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+ISKA
Sbjct: 418  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKA 477

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            LHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 478  LHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRLKHMVDDKIH 523


>gi|396941807|gb|AFN89621.1| RNA polymerase II, partial [Kuraishia capsulata]
          Length = 780

 Score =  991 bits (2562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/781 (59%), Positives = 601/781 (76%), Gaps = 40/781 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE F+IQ+++VALD+IG+RG  VG+ ++KRI++A++IL KE LPH+      
Sbjct: 1    LEMLKPCVEEGFLIQDREVALDFIGRRGNAVGIRKEKRIQFARDILTKEFLPHITQEPGY 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E +KA++ GYI++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KL+RD+  
Sbjct: 61   ENRKAFFLGYIVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLSRDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKC++  K+ NL  A+K+ TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQKCIETNKEFNLALAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + P+   LEEWG E  EE        AT++F+NG WVG HR+P +LV T+R+LRRR D++
Sbjct: 241  SDPLHYLLEEWGMEPLEEYDSQEHANATRVFLNGVWVGTHREPALLVNTMRQLRRRGDIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-----------------QRLLIKKRDII 646
             EV ++RDIR +E +I+TD GR  RPLF+V+                  ++++  + D  
Sbjct: 301  PEVSIIRDIREREFKIFTDAGRVYRPLFVVDDDPESEHKGELKLTKEHCRKIINSEEDDT 360

Query: 647  AL----QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV--------QARLH 694
            A+    ++ E P+  GW  LV  G +EY+D EEEET +I+M+  DL         QA L 
Sbjct: 361  AVYDDEEEDEGPKTFGWTSLVNHGVVEYVDAEEEETILIAMSPEDLAPVTTDVVQQAELD 420

Query: 695  PEEAY-------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 747
            P +         + ++THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++
Sbjct: 421  PAKRIKSAVNLASHSFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFL 480

Query: 748  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 807
            TNY  RMDT+A +LYYPQKPL  T+AME+L FR+LPAG NA+VAIACYSGYNQEDS+IMN
Sbjct: 481  TNYNVRMDTMANILYYPQKPLAKTQAMEYLKFRELPAGQNAVVAIACYSGYNQEDSMIMN 540

Query: 808  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 867
            QSSIDRG FRSLFFRSY D+E++  ++V E+F +P+RSNT+ ++HG+Y+KLD+DGL  PG
Sbjct: 541  QSSIDRGLFRSLFFRSYMDQERRSMSVV-EEFEKPNRSNTLRLKHGTYEKLDEDGLISPG 599

Query: 868  TRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLR 925
             RVSGED+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVLLTTN +GL+
Sbjct: 600  VRVSGEDIIIGKTVPIPADTEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLK 659

Query: 926  FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 985
            FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  ED+P+T EGI PD+I+NPHAIPSRMT
Sbjct: 660  FVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDVPFTAEGIVPDLIINPHAIPSRMT 719

Query: 986  IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 1045
            +  LIEC++ KV +  G EGDATPFTD+TVD +S+ L + GYQ RGFE MYNGHTG++L 
Sbjct: 720  VAHLIECLLSKVGSLRGYEGDATPFTDLTVDAVSRLLRENGYQSRGFEVMYNGHTGKKLM 779

Query: 1046 A 1046
            A
Sbjct: 780  A 780


>gi|396941889|gb|AFN89662.1| RNA polymerase II, partial [Scheffersomyces spartinae]
          Length = 758

 Score =  991 bits (2561), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/759 (62%), Positives = 591/759 (77%), Gaps = 29/759 (3%)

Query: 316  FVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 375
            FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  ET+KA++ GY+
Sbjct: 1    FVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQDEGFETRKAFFLGYM 59

Query: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 435
            ++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLT+D+  Y+Q+CV+N K 
Sbjct: 60   VNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENDKV 119

Query: 436  VNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
             NL  A+K++TIT GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+STLSHLRR N+P
Sbjct: 120  FNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 179

Query: 495  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
            IGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ + PIL FLEEW
Sbjct: 180  IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILYFLEEW 239

Query: 555  GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
            G E  E+  P+  P +T++FVNG WVG HR+P  LV+T+R LRRR D++ EV ++RDIR 
Sbjct: 240  GMEPLEDYVPSSSPDSTRVFVNGVWVGTHREPAHLVETMRNLRRRGDISPEVSIIRDIRE 299

Query: 615  KELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG--GWHDLVAK 665
            KE +I+TD GR  RPLF+V+       K  L ++K  I +L   E  E+   GW +LV  
Sbjct: 300  KEFKIFTDAGRVYRPLFVVDDDPESETKGNLKLQKEHIHSLLNSEYDENEKYGWTELVNA 359

Query: 666  GFIEYIDTEEEETTMISMTINDL---VQARLHPEE-------------AYADTYTHCEIH 709
            G +EY+D EEEET MI+M   DL        + EE             +   T+THCEIH
Sbjct: 360  GVVEYVDAEEEETIMIAMFPEDLESTANVESNEEEDMDAAKRIRTSIKSSTHTFTHCEIH 419

Query: 710  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
            PS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL 
Sbjct: 420  PSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLG 479

Query: 770  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 829
            TTR+ME L FR+LPAG NA+VAIACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D EK
Sbjct: 480  TTRSMEFLKFRELPAGQNAVVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEK 539

Query: 830  KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EA 888
            + G    E F +P RS+T+ ++HG+Y+KLDDDGL  PG RVSGED+IIGKTTPI  D E 
Sbjct: 540  RQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEE 599

Query: 889  QGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
             GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG +FVKVR+R+ ++PQIGDKF+SRH
Sbjct: 600  LGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRH 659

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGT+G+TY  EDMP++ +GI PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDA
Sbjct: 660  GQKGTIGVTYRHEDMPFSRQGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDA 719

Query: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            +PFTDVT + ISK L + GYQ RGFE MYNGHTG++L A
Sbjct: 720  SPFTDVTAEAISKLLREHGYQSRGFEVMYNGHTGKKLMA 758


>gi|396941859|gb|AFN89647.1| RNA polymerase II, partial [Metschnikowia agaves]
          Length = 771

 Score =  991 bits (2561), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/772 (61%), Positives = 589/772 (76%), Gaps = 42/772 (5%)

Query: 316  FVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 375
            FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++      E++KA++ GY+
Sbjct: 1    FVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEAGFESRKAFFLGYM 59

Query: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 435
            ++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LF+KLTRD+  Y+Q+CV+N K+
Sbjct: 60   VNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTRDIYNYMQRCVENDKE 119

Query: 436  VNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
             NL  A+K++TIT GL+YSLATGNWG Q  A   RAGVSQVLNR TY+STLSHLRR N+P
Sbjct: 120  FNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSARAGVSQVLNRYTYSSTLSHLRRTNTP 179

Query: 495  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
            IGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+++ PIL FLEEW
Sbjct: 180  IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTSSEPILYFLEEW 239

Query: 555  GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
            G E  E+  P+  P  T++FVNG WVG HR+P  LV T+RRLRR+ D++ EV ++RDIR 
Sbjct: 240  GMEPLEDYVPSNAPDCTRVFVNGVWVGTHREPAQLVDTMRRLRRKGDISPEVSIIRDIRE 299

Query: 615  KELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQR---ESPEDGG----WH 660
            KE +I+TD GR  RPLFIV+       K  L+++K  +  L      E  +D      W 
Sbjct: 300  KEFKIFTDAGRVYRPLFIVDDDPESETKGELMLQKEHVHKLLDSAYDEYDDDNSNAYTWS 359

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDLVQA-----------------------RLHPE- 696
             LV  G +EY+D EEEET MI+MT  DL  +                       R+ P  
Sbjct: 360  SLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLSETQQQDIQMEEQELDPAKRIKPTY 419

Query: 697  EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 756
             A   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT
Sbjct: 420  SASTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDT 479

Query: 757  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 816
            +A +LYYPQKPL TTR MEHL FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG F
Sbjct: 480  MANILYYPQKPLATTRGMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLF 539

Query: 817  RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 876
            RSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  PG RVSGED+I
Sbjct: 540  RSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDII 599

Query: 877  IGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 934
            IGKTTPI  D E  GQ ++Y  +RD S  LR +E+G+VDQVLLTTN DG +FVKVR+R+ 
Sbjct: 600  IGKTTPIPPDTEELGQRTQYHVKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTT 659

Query: 935  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 994
            ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ +GI PD+I+NPHAIPSRMT+  LIEC++
Sbjct: 660  KVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPDLIINPHAIPSRMTVAHLIECLL 719

Query: 995  GKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
             KV++  G EGDATPFTDVT + +SK L + GYQ RGFE MYNGHTG++L A
Sbjct: 720  SKVSSLSGLEGDATPFTDVTAEAVSKLLREHGYQSRGFEVMYNGHTGKKLMA 771


>gi|396941907|gb|AFN89671.1| RNA polymerase II, partial [Citeromyces matritensis]
          Length = 784

 Score =  989 bits (2558), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/784 (60%), Positives = 593/784 (75%), Gaps = 43/784 (5%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L P  EE FVIQ ++VALD+ G+RG+ +G+ R KRI YA++ILQKE LPH+   +  E
Sbjct: 1    EMLXPCXEEGFVIQXREVALDFXGRRGSALGIRRXKRIXYARDILQKEFLPHISQEEGFE 60

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
            T+KA++ GY+++RLLLCAL R+ EDDRDH+G KRLDLAGPL+ GLFR+LFRKLT+D+  Y
Sbjct: 61   TRKAFFLGYMVNRLLLCALERKEEDDRDHFGRKRLDLAGPLMAGLFRVLFRKLTKDIYRY 120

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +Q+CV+  KD N   A+K   IT+GL+YSLATGNWG Q  A  +RAGVSQVLNR TY+ST
Sbjct: 121  MQRCVETNKDFNXNLAVKPSIITNGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 180

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS +
Sbjct: 181  LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPS 240

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
              IL++L+EWG E  EE  P+    +TKIFVNG WVG HR P  LV+ ++ LRRR D++ 
Sbjct: 241  DMILDYLDEWGMEPLEEYVPSDAEHSTKIFVNGVWVGTHRIPADLVRNIKDLRRRGDISP 300

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQ--QRESPE 655
            EV ++R+IR KE +++TD GR   PLFIV+       K  L + K  I  LQ  Q E+ E
Sbjct: 301  EVSIIRNIREKEFKLFTDAGRVYXPLFIVDDDPESENKGELKLNKSHIERLQAXQDETGE 360

Query: 656  DG------------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE------ 697
             G            GW  LV  G +EY+D EEEET M +M   DL   R+  +E      
Sbjct: 361  YGMDVDEEEEDGXYGWSSLVKNGVVEYVDAEEEETIMXAMAPEDLTSGRVGVDEQRNVDM 420

Query: 698  -------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
                             T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 421  DRDPGLRIKPAINPSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 480

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            +Y TNY  RMDT++ +LYYPQKPL  T+AME+L FR+LPAG NAIVAIACYSGYNQEDS+
Sbjct: 481  VYSTNYNVRMDTMSNILYYPQKPLAKTQAMEYLKFRELPAGQNAIVAIACYSGYNQEDSM 540

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRSLF+RSY D+E+++G  V E+F +P RSNT+ ++HG+Y+KLD+DGL 
Sbjct: 541  IMNQSSIDRGLFRSLFYRSYTDQERRVGMSVVEEFEKPLRSNTLRLKHGTYEKLDEDGLV 600

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNAD 922
             PG RVSGED+IIGKTTPI  D E  GQ +++ T+RD S  LR +E+G+VDQVLLTTN D
Sbjct: 601  APGVRVSGEDIIIGKTTPIQPDTEELGQRTKFHTKRDASTPLRSTESGIVDQVLLTTNHD 660

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            G++FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EG+ PD+I+NPHAIPS
Sbjct: 661  GVKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGVVPDLIINPHAIPS 720

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMT+  LIEC++ KV++  G EGDATPFTD+TVD +SK L + GYQ RGFE MYNGHTG+
Sbjct: 721  RMTVAHLIECLLSKVSSMRGYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVMYNGHTGK 780

Query: 1043 RLTA 1046
            +L A
Sbjct: 781  KLMA 784


>gi|396941867|gb|AFN89651.1| RNA polymerase II, partial [Wickerhamia fluorescens]
          Length = 782

 Score =  989 bits (2556), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/783 (60%), Positives = 595/783 (75%), Gaps = 42/783 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ ++VALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LP++   +  
Sbjct: 1    LEMLKPCVEEGFVIQEREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGF 59

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKLT+D+  
Sbjct: 60   ESRKAFFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+CV+N K+ NL  A+K++T+T GL+YSLATG WG Q NA  +RA VSQVLNR TY+S
Sbjct: 120  YMQRCVENDKEFNLTLAVKSQTVTDGLRYSLATGXWGEQKNAMSSRAXVSQVLNRYTYSS 179

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 180  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PIL FLEEWG E  E+  P+  P +T++FVNG WVG HR+P  LV T+R LRRR D++
Sbjct: 240  SEPILYFLEEWGMEPLEDYVPSNAPDSTRVFVNGVWVGTHREPAHLVDTIRNLRRRGDIS 299

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPED 656
             EV ++RDIR KE +I+TD GR  RPLFIV+       K  L ++K  +  +   E  E 
Sbjct: 300  PEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEQVHKILNSEYDEY 359

Query: 657  G-------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA------------------ 691
                     W  LV+ G +EY+D EEEET MI+MT  DL  +                  
Sbjct: 360  DDDDMNHYNWSSLVSDGVVEYVDAEEEETIMIAMTPEDLEASKSLLSESELKDVQMEEQE 419

Query: 692  -----RLHPEEAYAD-TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 745
                 R+ P  + A  T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+
Sbjct: 420  LDPAKRIKPTYSGATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGV 479

Query: 746  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 805
            ++TNY  RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAI+CYSGYNQEDS+I
Sbjct: 480  FLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAISCYSGYNQEDSMI 539

Query: 806  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 865
            MNQSSIDRG FRSLFFRSY D EK+ G    E F +P RS+T+ ++HG+Y+KLDDDGL  
Sbjct: 540  MNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDDDGLIA 599

Query: 866  PGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADG 923
            PG RVSGED+IIGKTTPI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTN DG
Sbjct: 600  PGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRATESGIVDQVLLTTNGDG 659

Query: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
             +FVKVR+     PQIG KF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPSR
Sbjct: 660  AKFVKVRMXXXXXPQIGXKFASRHGQKGTIGITYRHEDMPFTSQGIVPDLIINPHAIPSR 719

Query: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043
            MT+  LIEC++ KV++  G EGDA+PFTDVT + +SK L + GYQ RGFE MYNGHTG++
Sbjct: 720  MTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYNGHTGKK 779

Query: 1044 LTA 1046
            L A
Sbjct: 780  LMA 782


>gi|396941841|gb|AFN89638.1| RNA polymerase II, partial [Hanseniaspora valbyensis]
          Length = 809

 Score =  989 bits (2556), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/810 (58%), Positives = 605/810 (74%), Gaps = 69/810 (8%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE FVIQ+++ ALD+IG+RGA +G+ ++KRI+Y K+ILQKE +PH+   +  
Sbjct: 1    LEMLKPCVEEGFVIQDRETALDFIGRRGAALGIKKEKRIQYVKDILQKEFIPHITRKEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E +KA++ GY+++RLLLCAL R+ +DDRDH+G KRLDL GPLL  LFR LF+K+TRD+  
Sbjct: 61   ENRKAFFLGYMVNRLLLCALDRKDQDDRDHFGKKRLDLGGPLLAQLFRTLFKKVTRDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
             +Q+ V+ GKD  L+ AIK +TIT+GLKY+LATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  VMQRSVEEGKDFILKTAIKHQTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSGISVGSD 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
              PI+ +L+E+G E  E+  P  +P  +++FVNG W GIHR+PE L+     LRR   ++
Sbjct: 241  PEPIIAYLKEFGLEPLEDYVPYKLPDVSRVFVNGVWHGIHRNPERLITDFINLRRSGVLS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDIIALQQRESPE-- 655
            +E+ +VRDIR KE+R  TD GR  RPL++V+       + L+I+KR I+ L Q +S E  
Sbjct: 301  SEIAIVRDIREKEIRFLTDAGRVYRPLYVVDTNPETGNKELVIRKRHILKLVQAQSSEYT 360

Query: 656  -------------------DG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL----- 688
                               DG    W  LV+KG +EY+D EEEET +I+M  +DL     
Sbjct: 361  VDEMSDDDEDGLSDGENDNDGQPWTWSTLVSKGMVEYLDAEEEETILIAMQQDDLKVDED 420

Query: 689  ------------------------------VQARLHPEEAYADTYTHCEIHPSLILGVCA 718
                                          + ++L  ++ +++T+THCEIHPS+ILGV A
Sbjct: 421  DELIDEVDVDVDMSKDHSIEEVGEATAKVAIDSKLK-KQYHSNTFTHCEIHPSMILGVAA 479

Query: 719  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 778
            SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY FRMDT+A +LYYPQKPL TTRAMEHL 
Sbjct: 480  SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNFRMDTMANILYYPQKPLGTTRAMEHLK 539

Query: 779  FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 838
            FR LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLFFR+Y D+EKK+G  V E 
Sbjct: 540  FRDLPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRAYMDQEKKVGMTVSET 599

Query: 839  FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYT 896
            F +P RS+T+ M+HG+YDKLDDDGL  PG RVSG+DVIIGKTTPI  D  E   + + +T
Sbjct: 600  FEKPTRSDTLRMKHGTYDKLDDDGLISPGVRVSGDDVIIGKTTPIKPDNEELGLRTAFHT 659

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            +RD S  LR +E+G++DQVL+TTN +GLRFVKVRVR+ ++PQIGDKF+SRHGQKGT+G+T
Sbjct: 660  KRDASTPLRSTESGIIDQVLITTNEEGLRFVKVRVRTTKVPQIGDKFASRHGQKGTIGIT 719

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC++ KVAA  G+EGDA+PF DVTVD
Sbjct: 720  YRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAAINGQEGDASPFVDVTVD 779

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            +IS  L + GYQ RGFE MYNGHTG++L A
Sbjct: 780  SISDLLRQAGYQSRGFEVMYNGHTGKKLMA 809


>gi|396941945|gb|AFN89689.1| RNA polymerase II, partial [Magnusiomyces magnusii]
          Length = 778

 Score =  989 bits (2556), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/776 (60%), Positives = 593/776 (76%), Gaps = 36/776 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P  EE  V+Q+++VALD+IG+RG+ +G+TR+KR++YA++ILQKE LP++   +  
Sbjct: 1    LEMLKPCXEEGXVVQDREVALDFIGRRGSAMGITREKRMRYARDILQKEXLPNITQEEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY+IH+LLL AL R   DDRDH+G KRLDLAGPLL  LFR+LF+KLTR +  
Sbjct: 61   ETRKAFFLGYMIHKLLLVALDRSDPDDRDHFGKKRLDLAGPLLAQLFRILFKKLTRXIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  KD NL  A+K+ TIT+GLKYSLATGNWG Q  A  TRAGVSQVLNR T++S
Sbjct: 121  YMQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSTRAGVSQVLNRYTFSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+A+PRQLHN+ WG +CPAETPEGQACGLVKNL+L+  ++VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKIARPRQLHNTHWGFVCPAETPEGQACGLVKNLSLLSGVSVGTP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI+ FL EWG E  E+  P   P AT+IFVNG WVG+H  P  +  T++ LRR+ D++
Sbjct: 241  SNPIVCFLSEWGMEPLEDYVPHAAPNATRIFVNGVWVGVHTXPGAIAXTMKTLRRKGDIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-----KQRLLIKK---RDIIALQQRESPE 655
             EV + RDIR KELRI TD GR  RPLF VE     K +L + K     +IA Q+ E+  
Sbjct: 301  AEVSITRDIRSKELRILTDAGRVYRPLFXVEHEGPNKGQLKVTKDLVNTVIAQQEEEAIG 360

Query: 656  DGG----------WHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLHPE---- 696
            D            W   V  G IEYID EEEET MI+M+  DL      QA +  E    
Sbjct: 361  DEDVKGDMEQHIDWEHFVKNGVIEYIDGEEEETVMIAMSNEDLEYSRHAQAGVEMEFREG 420

Query: 697  ------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 750
                     A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY
Sbjct: 421  ARRSTFNPNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNY 480

Query: 751  QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 810
              RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI CYSGYNQEDS+IMNQ S
Sbjct: 481  NVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSMIMNQGS 540

Query: 811  IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 870
            IDRG FRSLFFRSY D+E+++G  V E+F +P R++T+ ++HG+YDKLDDDGL  PG RV
Sbjct: 541  IDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKHGTYDKLDDDGLISPGIRV 600

Query: 871  SGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 928
            +GED+IIGKT PI  D + QGQ +++ T+RD S  LR +E G+VDQVLLTTN +GLRFVK
Sbjct: 601  AGEDIIIGKTAPIPPDSQEQGQRTQFHTKRDVSTPLRSTENGIVDQVLLTTNQEGLRFVK 660

Query: 929  VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
            VR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EG+ PD+++NPHAIPSRMT+  
Sbjct: 661  VRMRTTKVPQIGDKFASRHGQKGTIGVTYRNEDMPFSAEGVVPDLVINPHAIPSRMTVAH 720

Query: 989  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            LIEC++ KV+A  G EGDATPFTDVTVD++SK L + GYQ RGFE MY+GHTGR L
Sbjct: 721  LIECLLSKVSALSGYEGDATPFTDVTVDDVSKLLRENGYQSRGFEVMYHGHTGRXL 776


>gi|396941909|gb|AFN89672.1| RNA polymerase II, partial [Nakazawaea holstii]
          Length = 786

 Score =  988 bits (2554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/787 (59%), Positives = 593/787 (75%), Gaps = 46/787 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EEAFVIQ+++ ALD+IG+RG  +G+ R+KRI+YAK+IL KE+LPH+   +  
Sbjct: 1    LEMLKPCVEEAFVIQDRETALDFIGRRGNALGIRREKRIQYAKDILTKELLPHITQEEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET+KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPL+  LFR+LFRKLT+D+  
Sbjct: 61   ETRKAFFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLMANLFRILFRKLTKDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  +D NL  A+++ TIT+GLKYSLATGNWG Q  A   RAGVSQVLNR TY+S
Sbjct: 121  YMQKCVETNRDFNLALAVRSNTITAGLKYSLATGNWGEQKKAMTARAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            +  IL +LEEWG +  E+ +P   P+  +IFVNG WVG H DP  L   +R LRR+ D+N
Sbjct: 241  SDAILLYLEEWGMQAVEDFTPYKEPENARIFVNGVWVGTHSDPAQLNSAIRDLRRQGDIN 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPED 656
             EV +VRDIR KE +I+TD GR  RPLFIV+       K  L ++K  I  L +    + 
Sbjct: 301  PEVSIVRDIREKEFKIFTDAGRVYRPLFIVDDDEDSEHKGELKLRKEHIHKLIEGADQDQ 360

Query: 657  ---------------GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA---------- 691
                            GW  LV  G IEY+D EEEET MI+M I+DL+ A          
Sbjct: 361  IMYNEDEDEDEDENLFGWSGLVKNGVIEYVDAEEEETIMIAMQIDDLIAAKQEQLEHDHD 420

Query: 692  ----------RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 741
                      R+ P  + + T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQ
Sbjct: 421  DEPEEEDVAKRIRPTLS-SHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQ 479

Query: 742  AMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 801
            AMG++ TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAI+CYSGYNQE
Sbjct: 480  AMGVFATNYSVRMDTMANILYYPQKPLGTTRSMEFLRFRELPAGQNAIVAISCYSGYNQE 539

Query: 802  DSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 861
            DS+IMNQSSIDRG FRSLFFRSY D+E + G  V  +F +P RS+T+G + G+Y+KLDDD
Sbjct: 540  DSMIMNQSSIDRGLFRSLFFRSYSDQETRSGMSVLAEFEKPHRSDTLGFKQGTYEKLDDD 599

Query: 862  GLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTT 919
            GL  PG RVSG D+IIGKTTPI  D E  GQ ++Y T+RD S+ LR +E G+VDQVLLTT
Sbjct: 600  GLIAPGVRVSGADIIIGKTTPIQPDSEELGQRTKYHTKRDASMPLRTTENGIVDQVLLTT 659

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
            N +GL+FVKVR R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EGI PD+I+NPHA
Sbjct: 660  NQEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRNEDMPFSAEGIVPDLIINPHA 719

Query: 980  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
            IPSRMT+  LIEC++ KV++  G EGDATPFTD+TV+ +SK L + GY  RGFE MY+GH
Sbjct: 720  IPSRMTVAHLIECLLSKVSSLTGMEGDATPFTDLTVEQVSKLLRENGYHSRGFELMYHGH 779

Query: 1040 TGRRLTA 1046
            TG+++ A
Sbjct: 780  TGKKMMA 786


>gi|56694308|gb|AAW22894.1| RNA polymerase II second largest subunit [Marsilea quadrifolia]
          Length = 539

 Score =  988 bits (2554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/540 (87%), Positives = 492/540 (91%), Gaps = 1/540 (0%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALM YITVGSAA PILEFLEEW TEN EEISPAVI QATKIFVNGC
Sbjct: 1    ETPEGQACGLVKNLALMSYITVGSAANPILEFLEEWSTENXEEISPAVITQATKIFVNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHR+P++LV+TLR+LRR+VDVNTEVGVVRD  LKELR+YTDYGRCSRPLFIVE QRL
Sbjct: 61   WVGIHRNPDLLVRTLRQLRRQVDVNTEVGVVRDFSLKELRLYTDYGRCSRPLFIVENQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            +IKK DI  LQQRES E  GW+DLV KGFIEY+DTEEEETTMIS TI DLV ARLHPEEA
Sbjct: 121  VIKKSDIRDLQQRESSE-SGWYDLVTKGFIEYVDTEEEETTMISXTIQDLVNARLHPEEA 179

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y+D YTHCEIHPS+I            HNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLA
Sbjct: 180  YSDXYTHCEIHPSMIXXXXXXXXXXXXHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 239

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED VIMNQSSIDRGFFRS
Sbjct: 240  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDXVIMNQSSIDRGFFRS 299

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            +F+RSYRDEEKK GTLVKE+F RP R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 300  IFYRSYRDEEKKQGTLVKEEFERPSRENTSGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 359

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KTTP++QDE   QA RYT+RD S  LRHSE+GM DQVLLTTNADGLRFVK+RVRS+RIPQ
Sbjct: 360  KTTPVAQDETGTQAQRYTKRDQSTCLRHSESGMXDQVLLTTNADGLRFVKIRVRSIRIPQ 419

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 420  IGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 479

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AHMGKEGDATP TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 480  AHMGKEGDATPXTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 539


>gi|396941821|gb|AFN89628.1| RNA polymerase II, partial [Zygosaccharomyces rouxii]
          Length = 773

 Score =  988 bits (2553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/773 (62%), Positives = 598/773 (77%), Gaps = 31/773 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +E+ FVIQ+++ ALD+IG+RG  +G+ ++KRI+YA++ILQKE LPH+   +  
Sbjct: 1    LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGF 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+I+RLLLCAL RR +DDRDH+G KRLDLAGPLL  LF+ LFRKLTRD+  
Sbjct: 61   ESRKAFFLGYMINRLLLCALDRRDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+ V+  KD N++ AI AKTITSGLKY+LATGNWG Q  A  +RAGVSQVLNR TY+S
Sbjct: 121  YMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
              PI+ FL EWG E  E+  P   P+AT++FVNG W G+HR+P  L++TLR LRR+ D+N
Sbjct: 241  PMPIITFLSEWGMEPLEDYIPHQSPEATRVFVNGVWHGVHRNPARLMETLRTLRRKGDIN 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKRDIIALQQRESPE-D 656
             EV +VRDIR KEL+I+TD GR  RPLFIV+      ++ L I+K  I  L   E  + +
Sbjct: 301  PEVSMVRDIREKELKIFTDAGRVYRPLFIVDDDETLNRKELRIRKGHISKLMATEYQDIE 360

Query: 657  GG--------WHDLVAKGFIEYIDTEEEETTMISMTINDL--VQ-----------ARLHP 695
            GG        W  L+  G +EYID EEEET +ISM   DL  VQ           AR   
Sbjct: 361  GGFEDSEEYTWTSLLNDGLVEYIDAEEEETILISMQPEDLEPVQENTFNEDDDDLARRIK 420

Query: 696  EEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMD 755
               +A T+THCE+HPS+ILGV ASIIPFPDHNQSPRNTYQ+AMGKQAMG+++TNY  RMD
Sbjct: 421  ATHHATTFTHCEVHPSMILGVAASIIPFPDHNQSPRNTYQAAMGKQAMGVFLTNYNVRMD 480

Query: 756  TLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF 815
            T+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG 
Sbjct: 481  TMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGL 540

Query: 816  FRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            FRSLFFRSY D+EKK G    E F +P   NT+ M+ G+YDK D DGL  PG RVSGED 
Sbjct: 541  FRSLFFRSYMDQEKKYGMSXTETFEKPQXXNTLRMKXGTYDKXDXDGLIAPGVRVSGEDX 600

Query: 876  IIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
            I GKTTPIS DE + GQ + Y ++RD S  LR +E G+VDQ+L+TTN DGL+FVKVRVR+
Sbjct: 601  IXGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQILITTNQDGLKFVKVRVRT 660

Query: 934  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
             +IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+  LIEC+
Sbjct: 661  TKIPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECL 720

Query: 994  MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            + KVAA  G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L +
Sbjct: 721  LSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMS 773


>gi|396941811|gb|AFN89623.1| RNA polymerase II, partial [Ascoidea rubescens]
          Length = 777

 Score =  986 bits (2550), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/777 (60%), Positives = 592/777 (76%), Gaps = 35/777 (4%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L P ++EAF +Q+ QVAL++IG RG ++G  ++KRI+YAK+ILQ+E+LPH+   +  
Sbjct: 1    LEMLXPCIDEAFSVQDTQVALNFIGTRGRSLGARKEKRIQYAKDILQRELLPHITQLEGY 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            E++KA++ GY+IHRLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFR LT+D+  
Sbjct: 61   ESRKAFFLGYMIHRLLLCALERKEADDRDHFGKKRLDLAGPLLAKLFRILFRNLTKDIFR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKC+++ K  NL+ AIK+  IT GLKYSLATGNWG Q  A  ++AGVSQVLNR TY+S
Sbjct: 121  YLQKCIESNKAFNLKMAIKSGIITEGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS 
Sbjct: 181  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSVISVGSP 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            +  ILE+LEE+G E  E   P      TKIFVNG WVGIH  P  +V  +R LRR  D++
Sbjct: 241  SSIILEYLEEFGLEPLESFVPHEQKDTTKIFVNGVWVGIHPSPSDVVSQMRLLRRSADIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKR--------DIIAL 648
            +EV ++RDIR KE +I TD GR  RPLF+VE         RL  KK         D   L
Sbjct: 301  SEVSIIRDIREKEFKIVTDAGRVCRPLFVVENDPDSDDFGRLKFKKEHTDKLRRSDAGDL 360

Query: 649  QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE------------ 696
             + E  E   W  L+ +G IEY+D EEEET MI+MT  DL Q R+  E            
Sbjct: 361  DEDERDELFTWQSLLQQGIIEYVDAEEEETIMIAMTPEDLEQTRIGAELNSESVDAAKRI 420

Query: 697  ----EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 752
                  +  T+THCEIHP++ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  
Sbjct: 421  RQRNNFHVHTWTHCEIHPAMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNV 480

Query: 753  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 812
            RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSID
Sbjct: 481  RMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSID 540

Query: 813  RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 872
            RG FRSLFFRSY D+E++ G  + E+F +P RSNT+ ++HG+Y+K+D+DGL  PG RVSG
Sbjct: 541  RGLFRSLFFRSYTDQERRKGMSLVEEFEKPLRSNTLRLKHGTYEKIDEDGLIAPGIRVSG 600

Query: 873  EDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVR 930
            ED+IIGKTTPIS D E  G+ +++ T+RD S+ LR +E G+VDQV+LTTN +GL+FVKVR
Sbjct: 601  EDIIIGKTTPISPDNEELGRKTQFHTKRDASMPLRSTENGIVDQVVLTTNHEGLKFVKVR 660

Query: 931  VRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLI 990
            +R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP++ EGI PD+I+NPHAIPSRMT+  LI
Sbjct: 661  MRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFSREGIVPDLIINPHAIPSRMTVAHLI 720

Query: 991  ECIMGKVAAHMGKEGDATPFT-DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            EC++ KV A MG EGDATPF  D+TVD IS  L+  GYQ RGFE +YNGHTG++L A
Sbjct: 721  ECLLSKVCALMGTEGDATPFNDDITVDAISDILYTFGYQSRGFEVLYNGHTGKKLMA 777


>gi|396941843|gb|AFN89639.1| RNA polymerase II, partial [Candida abiesophila]
          Length = 785

 Score =  986 bits (2549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/785 (59%), Positives = 593/785 (75%), Gaps = 43/785 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE F+IQ+Q+VALD+IG+RG   G+ +D+RI++AK+ILQ+E LPH+      
Sbjct: 1    LEMLKPCIEEGFLIQSQEVALDFIGRRGNATGIKKDRRIQFAKDILQREFLPHISQDSGH 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET KAY+ GY+IHRLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+LFRKL+RD+  
Sbjct: 61   ETNKAYFLGYVIHRLLLCALERKEQDDRDHFGXKRLDLAGPLLANLFRILFRKLSRDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+C++ G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  ++AGVSQVLNR TYAS
Sbjct: 121  YMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYAS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKN + M  I+VG+A
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNXSXMSCISVGTA 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI   LEEWG E   +  P     +T++F+NG WVG HRDP +LV+T+++LRR   ++
Sbjct: 241  SEPITYLLEEWGLEPMSDYDPQEHKDSTRVFLNGNWVGTHRDPSLLVETMKQLRRSGTIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-----------------QRLLIKKRDII 646
             EV +VRDIR KE +I+TD GR  RP F V+                  +++L ++ ++I
Sbjct: 301  PEVSLVRDIREKEFKIFTDAGRVYRPXFXVDNDPDSETKGGLKLTKEXCRKILDRELEVI 360

Query: 647  ALQQR-------ESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE 697
               +        + PE    GW  LV  G +EY+D EEEET +I+M+  DL Q     EE
Sbjct: 361  EGDEEFEEDGTIKEPETRIFGWESLVTGGVVEYLDAEEEETVLIAMSSEDLQQISXEDEE 420

Query: 698  AYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
               D              ++THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 421  IKLDLDPAQRIKNHINAHSFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 480

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+Y+TNY  RMDT++ +LYYPQKPL  T++ME L FR+LPAG NAIVAI+CYSGYNQEDS
Sbjct: 481  GVYLTNYNVRMDTMSNILYYPQKPLAKTQSMEFLKFRELPAGQNAIVAISCYSGYNQEDS 540

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            +IMNQSSIDRG FRSLFFRSY D+E++ G  V E+F +P RSNT+G + G+Y+ LDDDGL
Sbjct: 541  MIMNQSSIDRGLFRSLFFRSYMDQERRSGISVVEEFEKPMRSNTLGFKAGTYEXLDDDGL 600

Query: 864  APPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G VDQVLLTTNA
Sbjct: 601  ISPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTENGXVDQVLLTTNA 660

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+TVEG+ PD+I+NPHAIP
Sbjct: 661  EGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTVEGVVPDLIINPHAIP 720

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMT+  LIEC++ KVA+  G EGDATPFT +TVD +SK L + GYQ RGFE +YNGHTG
Sbjct: 721  SRMTVAHLIECLLSKVASLRGYEGDATPFTALTVDAVSKLLRENGYQSRGFEVIYNGHTG 780

Query: 1042 RRLTA 1046
            +++ A
Sbjct: 781  KKMMA 785


>gi|396941849|gb|AFN89642.1| RNA polymerase II, partial [Kregervanrija fluxuum]
          Length = 785

 Score =  986 bits (2549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/785 (60%), Positives = 598/785 (76%), Gaps = 43/785 (5%)

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
            +E+L+P +EE F+IQ+Q+VALD+IG+RG  VG+ R++RI++AK+ILQ+E LPH+      
Sbjct: 1    LEMLKPCIEEGFLIQSQEVALDFIGRRGNAVGIKRERRIQFAKDILQREFLPHISQDSGH 60

Query: 365  ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
            ET KAY+ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+LFRKL+RD+  
Sbjct: 61   ETNKAYFLGYVINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYR 120

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+Q+C++ G+D N+  A+K+ TITSGLKYSLATGNWG Q  A  ++AGVSQVLNR TY+S
Sbjct: 121  YMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSS 180

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ 
Sbjct: 181  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTQ 240

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI   LEEWG E   +  P     AT++F+NG WVG HRDP MLV T+++LRR   ++
Sbjct: 241  SEPITYLLEEWGLEPLSDYDPQEHKHATRVFLNGNWVGTHRDPGMLVDTMKQLRRSGTIS 300

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKK---RDIIALQQRES 653
             EV ++RDIR +E +I+TD GR  RPLFIV+       K  L + K   R I+  +  E 
Sbjct: 301  PEVSLIRDIREREFKIFTDAGRVYRPLFIVDDDPDSEHKGGLKLTKEHCRRILDREVEEI 360

Query: 654  PEDG----------------GWHDLVAKGFIEYIDTEEEETTMISMTINDLV------QA 691
            P+D                  W  LV  G +EY+D EEEET +I+M+  DL       Q 
Sbjct: 361  PQDDEFDENGEPLEPIQRIFCWDSLVTNGVVEYLDAEEEETVLIAMSSEDLTPISEQEQK 420

Query: 692  R---LHPEEAY-----ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
            R   L P +       A ++THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 421  RELDLDPAKRIKNHIGAHSFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 480

Query: 744  GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
            G+Y+TNY  RMDT+A +LYYPQKPL  T++ME L FR+LPAG NAIVAIACYSGYNQEDS
Sbjct: 481  GVYLTNYNVRMDTMANILYYPQKPLAKTQSMEFLKFRELPAGQNAIVAIACYSGYNQEDS 540

Query: 804  VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
            +IMNQSSIDRG FRSLFFRSY D+E++ G  + E+F +P RS+T+G + G+Y+KLDDDGL
Sbjct: 541  MIMNQSSIDRGLFRSLFFRSYMDQERRNGISIVEEFEKPMRSSTLGFKAGTYEKLDDDGL 600

Query: 864  APPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNA 921
              PG RVSG+D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E G+VDQVLLTTNA
Sbjct: 601  ISPGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTENGIVDQVLLTTNA 660

Query: 922  DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 981
            +GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+ PD+I+NPHAIP
Sbjct: 661  EGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTSEGVVPDLIINPHAIP 720

Query: 982  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
            SRMT+  LIEC++ KVA+  G EGDATPFTD+TVD +S+ L + GYQ RGFE +YNGHTG
Sbjct: 721  SRMTVAHLIECLLSKVASLRGYEGDATPFTDLTVDAVSRLLRENGYQSRGFEVVYNGHTG 780

Query: 1042 RRLTA 1046
            +++ A
Sbjct: 781  KKMMA 785


>gi|56694322|gb|AAW22901.1| RNA polymerase II second largest subunit [Stangeria eriopus]
          Length = 538

 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/538 (87%), Positives = 495/538 (92%), Gaps = 11/538 (2%)

Query: 541  GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
            GSA  PILEFLEEW TENFEEISPAVIP +TKIFVNGCWVGIHRDP++LVKTLR+LRR+V
Sbjct: 1    GSAPNPILEFLEEWSTENFEEISPAVIPNSTKIFVNGCWVGIHRDPDLLVKTLRQLRRQV 60

Query: 601  DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--- 657
            DVNTEVGVVRDIRL ELR+YTDYGRCSRPLFIVE QRLLIKK DII LQQR+        
Sbjct: 61   DVNTEVGVVRDIRLSELRLYTDYGRCSRPLFIVENQRLLIKKPDIIRLQQRDQLPPPDPE 120

Query: 658  -------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT-YTHCEIH 709
                   GW  LV +GFIEY+DTEEEETTMISMTI DLV AR  P  A +   YTHCEIH
Sbjct: 121  EEXPPARGWPALVNQGFIEYVDTEEEETTMISMTIADLVNARNSPPTASSIVKYTHCEIH 180

Query: 710  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
             SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLV
Sbjct: 181  XSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLV 240

Query: 770  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 829
            TTRAMEHLHFRQLPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLF+RSYRDEEK
Sbjct: 241  TTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEK 300

Query: 830  KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ 889
            +MGTL+KE+FGRP+R NT+GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++QDE+ 
Sbjct: 301  RMGTLIKEEFGRPNRENTIGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVTQDESG 360

Query: 890  GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            GQA+RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQ
Sbjct: 361  GQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 420

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGTVGMTY QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP
Sbjct: 421  KGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 480

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 481  FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH 538


>gi|396941799|gb|AFN89617.1| RNA polymerase II, partial [Ogataea glucozyma]
          Length = 774

 Score =  983 bits (2541), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/775 (60%), Positives = 594/775 (76%), Gaps = 45/775 (5%)

Query: 316  FVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYI 375
            F+ Q+Q+VALDYIG+RG ++G+ R++RI+YAK+ILQ+E LPH+      ET KAY+ GYI
Sbjct: 1    FLXQSQEVALDYIGRRGNSIGIKRERRIQYAKDILQREFLPHISQDTGFETNKAYFLGYI 60

Query: 376  IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD 435
            I+RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKL+RD+  Y+Q+C++ G+D
Sbjct: 61   INRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRYMQRCIERGED 120

Query: 436  VNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
             N+  A+K+ TI SGLKYSLATG WG Q  A  +RAGVSQVLNR TY+STLSHLRR N+P
Sbjct: 121  FNIVSAVKSTTIXSGLKYSLATGXWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 180

Query: 495  IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
            IGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  ++VGSA+ PI   LEEW
Sbjct: 181  IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMACVSVGSASEPITYLLEEW 240

Query: 555  GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
            G E   +  P     AT++F+NG WVG HRDP MLV T+R+LRR   ++ EV ++RDIR 
Sbjct: 241  GLEPLSDYEPQEHKNATRVFLNGNWVGTHRDPAMLVDTMRQLRRSGTISPEVSLIRDIRE 300

Query: 615  KELRIYTDYGRCSRPLFIVEK-----------------QRLLIKKRDIIALQQRESPEDG 657
            +E +I+TD GR  RPLFIV+                  +++L ++ + IA Q  E  E+G
Sbjct: 301  REFKIFTDAGRIYRPLFIVDDDPDSEHKGELKLTKEHCRKILDREVEEIA-QDEEFDEEG 359

Query: 658  ----------GWHDLVAKGFIEYIDTEEEETTMISMTINDLV---------QARLHPEEA 698
                      GW  L++ G IEY+D EEEET +I+M+  DL+         QA L P + 
Sbjct: 360  EPLEPIQRVYGWDSLLSGGIIEYLDAEEEETVLIAMSPEDLIPVTEQDAQKQAELDPAKR 419

Query: 699  YAD-----TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 753
              +     ++THCE+HPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  R
Sbjct: 420  IKNVIKTHSFTHCEVHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVR 479

Query: 754  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 813
            MDT+A +LYYPQKPL  T+AME+L FR+LPAG NAIVAI+CYSGYNQEDS+IMNQSSIDR
Sbjct: 480  MDTMANILYYPQKPLAKTQAMEYLKFRELPAGQNAIVAISCYSGYNQEDSMIMNQSSIDR 539

Query: 814  GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGE 873
            G FRSLFFRSY D+E++ G  + E+F +P R++T+G + G+Y+KLDDDGL  PG RVSG+
Sbjct: 540  GLFRSLFFRSYMDQERRNGISIVEEFEKPMRASTLGFKTGTYEKLDDDGLISPGVRVSGD 599

Query: 874  DVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            D+IIGKT PI  D E  GQ ++Y T+RD S  LR +E+G+VDQVLLTTNA+GL+FVKVR+
Sbjct: 600  DIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTESGIVDQVLLTTNAEGLKFVKVRM 659

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            R+ +IPQIGDKF+SRHGQKGT+G+TY  EDMP+T +GI PD+I+NPHAIPSRMT+  LIE
Sbjct: 660  RTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGIVPDLIINPHAIPSRMTVAHLIE 719

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            C++ KVA+  G EGDATPFTD+TVD +SK L + GYQ RGFE MYNGHTG++L A
Sbjct: 720  CLLSKVASLRGYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVMYNGHTGKKLMA 774


>gi|396941845|gb|AFN89640.1| RNA polymerase II, partial [Saturnispora dispora]
          Length = 764

 Score =  982 bits (2538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/764 (61%), Positives = 590/764 (77%), Gaps = 35/764 (4%)

Query: 318  IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
            IQ+Q+VALD+IG+RG   G+ RD+RI++AK+ILQ+E LPH+      ET KAY+ GY+I+
Sbjct: 1    IQSQEVALDFIGRRGNATGIKRDRRIQFAKDILQREFLPHISQDSGHETNKAYFLGYVIN 60

Query: 378  RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
            RLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+LFRKL+RD+  Y+Q+C++ G+D N
Sbjct: 61   RLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIFRYMQRCIERGEDFN 120

Query: 438  LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
            +  A+K+ TITSGLKYSLATGNWG Q  A  ++AGVSQVLNR TYASTLSHLRR N+PIG
Sbjct: 121  IVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYASTLSHLRRTNTPIG 180

Query: 497  REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
            R+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ + PI   LEEWG 
Sbjct: 181  RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTQSEPITYLLEEWGL 240

Query: 557  ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKE 616
            E   +  P     + ++F+NG WVG HRDP +LV T+R+LRR   +++EV +VRDIR KE
Sbjct: 241  EPMSDYDPIKHKDSIRVFLNGNWVGTHRDPSLLVDTMRQLRRNGTISSEVSLVRDIREKE 300

Query: 617  LRIYTDYGRCSRPLFIVE-------KQRLLIKK--------RDIIALQQRESPEDG---- 657
             +I+TD GR  RPLFIV+       K  L + K        R++  L+  +  E+     
Sbjct: 301  FKIFTDAGRVYRPLFIVDDDEDSETKGGLKLTKEHCRKILDRELEVLEADDEDEEQQTRE 360

Query: 658  -GWHDLVAKGFIEYIDTEEEETTMISMTINDL--VQARLHPEEA----------YADTYT 704
             GW  LV+ G +EY+D EEEET +I+M+ +DL  VQ   H +             A+++T
Sbjct: 361  FGWESLVSNGVVEYLDAEEEETVLIAMSFDDLQPVQENAHDDHIDPAQRIKNHINANSFT 420

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDT+A +LYYP
Sbjct: 421  HCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYNVRMDTMANILYYP 480

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPL  T++ME L FR+LPAG NAIVAI+CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY
Sbjct: 481  QKPLGKTQSMEFLKFRELPAGQNAIVAISCYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY 540

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
             D+E++ G  V E+F +P R++T+G + G+Y+KLDDDGL  PG RVSG+D+IIGKT PI 
Sbjct: 541  MDQERRNGISVVEEFEKPMRASTLGFKAGTYEKLDDDGLISPGVRVSGDDIIIGKTVPIP 600

Query: 885  QD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 942
             D E  GQ ++Y T+RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ ++PQIGDK
Sbjct: 601  PDTEELGQRTKYHTKRDASTPLRTTENGIVDQVLLTTNAEGLKFVKVRMRTTKVPQIGDK 660

Query: 943  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
            F+SRHGQKGT+G+TY  EDMP+TVEG+ PD+I+NPHAIPSRMT+  LIEC++ KVA+  G
Sbjct: 661  FASRHGQKGTIGITYRHEDMPFTVEGVVPDLIINPHAIPSRMTVAHLIECLLSKVASLRG 720

Query: 1003 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
             EGDATPFTD+TVD +SK L + GYQ RGFE +YNGHTG+++ A
Sbjct: 721  YEGDATPFTDLTVDAVSKLLRENGYQSRGFEVLYNGHTGKKMMA 764


>gi|56694338|gb|AAW22909.1| RNA polymerase II second largest subunit [Podocarpus coriaceus]
          Length = 514

 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/517 (89%), Positives = 490/517 (94%), Gaps = 3/517 (0%)

Query: 542  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
            S+  PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDPE+LV+TLR+LRR+VD
Sbjct: 1    SSPNPILEFLEEWSTENFEEISPAVIPTATKIFVNGCWVGIHRDPELLVRTLRQLRRQVD 60

Query: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 661
            VN EVGVVRDIRL+ELR+YTDYGRCSRPLF+V+KQRL+IKKRDI  L Q  +PEDG WHD
Sbjct: 61   VNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVKKQRLIIKKRDINELWQ--NPEDG-WHD 117

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
            L+ KGFIEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHP LILGVCASII
Sbjct: 118  LITKGFIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPXLILGVCASII 177

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMG YVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 178  PFPDHNQSPRNTYQSAMGKQAMGXYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 237

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+FGR
Sbjct: 238  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGR 297

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 901
            P+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+SQ+E+  Q S+YTRRD S
Sbjct: 298  PNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVSQEESGNQISKYTRRDQS 357

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
             SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 358  TSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 417

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+ISKA
Sbjct: 418  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKA 477

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            LHKCGYQMRGFETMYNGHTGR+L AMIFLGPTYYQRL
Sbjct: 478  LHKCGYQMRGFETMYNGHTGRKLNAMIFLGPTYYQRL 514


>gi|86559347|gb|ABD04081.1| RNA polymerase II second largest subunit, partial [Coniophora arida]
          Length = 711

 Score =  980 bits (2534), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/712 (66%), Positives = 565/712 (79%), Gaps = 27/712 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSST-VCTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 690
             Q+LL++K+ I  L Q     +  E+  W  LV  G IE +D EEEET MISMT  DL  
Sbjct: 240  NQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQLVKGGVIELLDAEEEETVMISMTPEDLEN 299

Query: 691  ARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
            +RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPDHNQSPR
Sbjct: 300  SRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPR 359

Query: 732  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
            NTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVA
Sbjct: 360  NTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVA 419

Query: 792  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 851
            I CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+
Sbjct: 420  ILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMK 479

Query: 852  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSET 909
            HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E 
Sbjct: 480  HGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEN 539

Query: 910  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
            G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI
Sbjct: 540  GIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGI 599

Query: 970  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1029
             PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ 
Sbjct: 600  VPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQS 659

Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
            RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 660  RGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 711


>gi|396941913|gb|AFN89674.1| RNA polymerase II, partial [Peterozyma toletana]
          Length = 775

 Score =  979 bits (2531), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/775 (60%), Positives = 580/775 (74%), Gaps = 48/775 (6%)

Query: 315  AFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGY 374
            AFVIQ+++ ALD+IG+RG  +G+ R+KRI+YAK+ILQKE+LPH+   +  ET+KA++ GY
Sbjct: 1    AFVIQDRETALDFIGRRGNALGIRREKRIQYAKDILQKELLPHITQEEGFETRKAFFLGY 60

Query: 375  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
            +++RLLLCAL R+ +DDRDH+G KRLDLAGPL+  LFR+LFRKLT+D+  Y+Q+CV+  +
Sbjct: 61   MVNRLLLCALERKEQDDRDHFGKKRLDLAGPLMANLFRILFRKLTKDIFRYMQRCVETNR 120

Query: 435  DVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
            D NL  A+KA TITSGLKYSLATGNWG Q  A   RAGVSQVLNR TY+STLSHLRR N+
Sbjct: 121  DFNLTLAVKANTITSGLKYSLATGNWGEQKKAMTARAGVSQVLNRYTYSSTLSHLRRTNT 180

Query: 494  PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 553
            PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS +  I+ FLEE
Sbjct: 181  PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPSDTIIFFLEE 240

Query: 554  WGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIR 613
            WG +  E+ +P   P+A ++FVNG WVG H DP  +   +R LRR  +++ EV +VRDIR
Sbjct: 241  WGMQAVEDFTPYKDPEAVRVFVNGVWVGTHSDPTSMDNNIRELRRGGNISPEVSIVRDIR 300

Query: 614  LKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPED---------- 656
             KE +I+TD GR  RPLFIVE       K  L +KK  I +L      +           
Sbjct: 301  EKEFKIFTDAGRVYRPLFIVEDDQDSPNKGDLKLKKEHIYSLLNSNEEDQYLKEENEDDE 360

Query: 657  --------GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV---QARLHPEEAYAD---- 701
                     GW  LV  G IEY+D EEEET MI+M  +DLV   Q R   E+   +    
Sbjct: 361  DDEESRRISGWSSLVKNGIIEYVDAEEEETIMIAMQTDDLVSNRQKRFLEEDGSTEEVDV 420

Query: 702  -------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
                         T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG++ T
Sbjct: 421  AKRIKPTMINSSHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFAT 480

Query: 749  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
            NY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NA+VAIACYSGYNQEDS+IMNQ
Sbjct: 481  NYSVRMDTMANILYYPQKPLGTTRSMEFLRFRELPAGQNAVVAIACYSGYNQEDSMIMNQ 540

Query: 809  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
            SSIDRG FRSLFFRSY D+E + G  V  +F +P RS+T+G + G+Y+KLDDDGL  PG 
Sbjct: 541  SSIDRGLFRSLFFRSYSDQETRTGISVAAEFEKPQRSDTLGFKQGTYEKLDDDGLISPGV 600

Query: 869  RVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
            RVSG D+IIGKT PI  D E  GQ ++Y T+RD S+ LR +E G++DQV+LTTN +GL+F
Sbjct: 601  RVSGADIIIGKTIPIQPDSEELGQRTKYHTKRDASMPLRTTENGIIDQVMLTTNQEGLKF 660

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
            VKVR R+ ++PQIGDKF+SRHGQKGTVG+TY  EDMP++ EG+ PD+I+NPHAIPSRMT+
Sbjct: 661  VKVRTRTTKVPQIGDKFASRHGQKGTVGITYRHEDMPFSSEGVVPDLIINPHAIPSRMTV 720

Query: 987  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTG 1041
              LIEC++ KV++  G EGDATPFTD+TV+ +SK L + GYQ RGFE MY+GHTG
Sbjct: 721  AHLIECLLSKVSSLTGMEGDATPFTDLTVEQVSKLLRENGYQSRGFEIMYHGHTG 775


>gi|56694332|gb|AAW22906.1| RNA polymerase II second largest subunit [Agathis australis]
          Length = 514

 Score =  979 bits (2530), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/517 (88%), Positives = 492/517 (95%), Gaps = 3/517 (0%)

Query: 542  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
            S+A PILEFLEEW TENFEEISPAV P ATKIFVNGCWVGIHRDPE+LV+TLR+LRR+VD
Sbjct: 1    SSANPILEFLEEWSTENFEEISPAVXPTATKIFVNGCWVGIHRDPELLVRTLRQLRRQVD 60

Query: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 661
            VN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK+DI  L  R++PE+G WH+
Sbjct: 61   VNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIKKKDINEL--RQNPEEG-WHE 117

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
            LV KGFIEY+DTEEEETTMISMTINDLV AR++PE+AY+ TYTHCEIHPSLILGVCASII
Sbjct: 118  LVNKGFIEYVDTEEEETTMISMTINDLVNARINPEDAYSHTYTHCEIHPSLILGVCASII 177

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQ PLVTTRAMEHLHFRQ
Sbjct: 178  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQXPLVTTRAMEHLHFRQ 237

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+FGR
Sbjct: 238  LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGR 297

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 901
            P+R NT GMRHGSYDKLD+DGLAPPGTRVSGEDVIIGKTTPI+QDE  GQ SR++RRD S
Sbjct: 298  PNRENTTGMRHGSYDKLDEDGLAPPGTRVSGEDVIIGKTTPITQDEQGGQLSRFSRRDQS 357

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
             SLRHSE+GMVDQVLLTTN DGLRFVK+R+RSVRIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 358  TSLRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 417

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+ISKA
Sbjct: 418  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKA 477

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            LHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 478  LHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 514


>gi|112382383|gb|ABI17423.1| RNA polymerase II second largest subunit, partial [Sympodiomycopsis
            paphiopedili]
          Length = 746

 Score =  978 bits (2529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/747 (63%), Positives = 578/747 (77%), Gaps = 46/747 (6%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDL GPLL GLFRMLFRKLTRD+  ++++CV+  ++ +L  A+K+ TIT+GL+
Sbjct: 1    DHFGKKRLDLGGPLLAGLFRMLFRKLTRDIYRHLERCVEESREFHLTTAVKSSTITNGLR 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q      +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P+  FL+E+G +N  ++S +   +AT
Sbjct: 121  WGMVCPAETPEGQACGLVKNLSLMSLISVGSPSAPLHHFLDEFGLDNLVDMSISSA-KAT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W G H +P  LV+TLR LRR+ D+ TEV VV D+R KELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWAGTHSEPSSLVETLRDLRRKDDITTEVSVVHDVREKELRLYTDSGRVLRPLF 239

Query: 632  IVEKQ--RLLIKKRDIIALQQRESP---EDGG------------WHDLVAKGFIEYIDTE 674
            IV+ +  RLL+ +  +  L   E P   +D G            W  LVA+G IEY+D +
Sbjct: 240  IVDPKSMRLLVTREHVQWLNAEEKPGTIDDLGMDADEDDKERFRWSQLVAEGVIEYLDAD 299

Query: 675  EEETTMISMTINDLVQAR-------LHPEEAYAD------------------TYTHCEIH 709
            EEET MI M+  DL ++R       L  E A  D                  T+THCEIH
Sbjct: 300  EEETVMICMSPQDLAKSRKLNRHGILTGETAGLDGLPDPSARLVSARTYEPSTWTHCEIH 359

Query: 710  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
            P++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ RMDT+A +LYYPQKPL 
Sbjct: 360  PAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLA 419

Query: 770  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 829
            TTRAMEHL+FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSL++R+Y D EK
Sbjct: 420  TTRAMEHLNFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYTDFEK 479

Query: 830  KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EA 888
            K+G  ++E+F +P R  ++ ++HG+YDK+D DGL  PGTRVSGED+IIGKT P+  D E 
Sbjct: 480  KVGFTLQEEFEKPTREXSIRLKHGTYDKIDADGLVAPGTRVSGEDIIIGKTAPLPPDSEE 539

Query: 889  QGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
             G  S+ +T+RD S  L+ +E+G+VDQVL++TN +G +FVKVRVRS R+PQ GDKF+SRH
Sbjct: 540  LGLRSKTHTKRDVSTPLKSTESGIVDQVLVSTNQEGSKFVKVRVRSTRVPQTGDKFASRH 599

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGT+G+TY QEDMP+T+EG+TPDII+NPHAIPSRMTIG L+EC++ KVA   G+EGDA
Sbjct: 600  GQKGTIGITYRQEDMPFTIEGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDA 659

Query: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            TPFTD+TV+ +S  L K GYQ RG E MYNGHTGR+L A ++LGPTYYQRLKHMVDDKIH
Sbjct: 660  TPFTDLTVEAVSSILAKLGYQKRGLEVMYNGHTGRKLQAQVYLGPTYYQRLKHMVDDKIH 719

Query: 1068 SRGRGPVQILTRQPAEGRSRDGGLRFG 1094
            SR RGPVQILTRQP EGRSRDGGLRFG
Sbjct: 720  SRARGPVQILTRQPVEGRSRDGGLRFG 746


>gi|70794982|gb|AAZ08465.1| RNA polymerase II second largest subunit [Spinacia oleracea]
          Length = 495

 Score =  978 bits (2527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/495 (93%), Positives = 480/495 (96%)

Query: 44  QQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMT 103
           QQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QSDFAETIYKI FGQIYLSKPMMT
Sbjct: 1   QQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKIKFGQIYLSKPMMT 60

Query: 104 ESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 163
           ESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI+KGHDG+E+TE  +  KVFIGKVPIM
Sbjct: 61  ESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIRKGHDGDELTEAHELPKVFIGKVPIM 120

Query: 164 LRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 223
           LRSSYCTLYQNSEKDLTELGECPYDQGG FIINGSEKVLIAQEKMSTNHVYVFKKRQPNK
Sbjct: 121 LRSSYCTLYQNSEKDLTELGECPYDQGGCFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 180

Query: 224 YAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRAL 283
           +AYVAEVRSMAESQNRPPSTMFVRMLSR  AKGGSSGQYIR TLPYI+++IPIIIVFRAL
Sbjct: 181 FAYVAEVRSMAESQNRPPSTMFVRMLSRAGAKGGSSGQYIRCTLPYIKSDIPIIIVFRAL 240

Query: 284 GFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRI 343
           GFVADKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR+KRI
Sbjct: 241 GFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRI 300

Query: 344 KYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLA 403
           KYA+EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLA
Sbjct: 301 KYAREILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLA 360

Query: 404 GPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQA 463
           GPLLGGLFRMLFRKLTRDVR YVQKCVD+GKD+NL FAIKAKTITSGLKYSLATGNWGQA
Sbjct: 361 GPLLGGLFRMLFRKLTRDVRGYVQKCVDSGKDLNLSFAIKAKTITSGLKYSLATGNWGQA 420

Query: 464 NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 523
           NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG
Sbjct: 421 NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 480

Query: 524 QACGLVKNLALMVYI 538
           QACGLVKNLALMVYI
Sbjct: 481 QACGLVKNLALMVYI 495


>gi|89274922|gb|ABD65902.1| RNA polymerase II second largest subunit, partial [Tremellodendron
            pallidum]
          Length = 716

 Score =  977 bits (2526), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/720 (63%), Positives = 567/720 (78%), Gaps = 25/720 (3%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL GLFR+LFRK+++D   Y+QKC + G+  ++  AIK  TI++GLKYS
Sbjct: 1    FGKKRLDLAGPLLTGLFRLLFRKVSKDCYRYMQKCAETGRLFDVSRAIKVATISNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q +A  ++AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQQHAMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            M+CPAETPEGQACGLVKNLALM  I+VGS + P+ EFL+EWG E+ EE + A  P  TK+
Sbjct: 121  MVCPAETPEGQACGLVKNLALMACISVGSYSAPVGEFLDEWGLESLEENAQAATP-CTKV 179

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG W+G+HRDP  LV+TL++LRR  D+N EV VVRDIR KELRIYTD GR  RPLF+V
Sbjct: 180  FVNGVWMGVHRDPAALVRTLKKLRRNEDLNPEVSVVRDIREKELRIYTDSGRVCRPLFVV 239

Query: 634  EKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL 693
               +LLI+K  ++ + +++      W DL+  G IE +D EEEET MI M+  DL  AR 
Sbjct: 240  NDGKLLIQKEHVLKIAEKQG---YAWSDLIHDGVIELLDAEEEETVMICMSPEDLEAART 296

Query: 694  HPEEAY------------------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
              +  Y                  A  ++HCEIHPS+ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 297  QADTTYHTESAAPDPAQRVKTVIKAHAWSHCEIHPSMILGVCASIIPFPDHNQSPRNTYQ 356

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGI ++N+  RMDT+A +LYYPQKPL TTRA+E+L FR+LPAG NAIVAI CY
Sbjct: 357  SAMGKQAMGISLSNFLLRMDTMANILYYPQKPLATTRALEYLKFRELPAGQNAIVAILCY 416

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSSIDRG FRS++++SY D EK  G ++ E+F +P R NT  M+HG+Y
Sbjct: 417  SGYNQEDSVIMNQSSIDRGXFRSIYYKSYMDVEKTTGQVILEEFEKPSRENTXRMKHGNY 476

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQ-DEAQGQ-ASRYTRRDHSISLRHSETGMVD 913
            DKLDDDG+  PGT V GED++IGKT P+ +  E  GQ  S +TRRD S  L+ +E+G+VD
Sbjct: 477  DKLDDDGIIAPGTNVIGEDILIGKTAPLPEGSEELGQRKSTHTRRDVSTPLKSTESGIVD 536

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
             V+++ NADG RFVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T +GITPD+
Sbjct: 537  HVIVSLNADGHRFVKIRVRSTRVPQIGDKFASRHGQKGTIGVTYRQEDMPFTADGITPDL 596

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            ++NPHAIPSRMTIG L+EC++ KVA  +G++GDATPFTD+TV+ +S  L + G+Q RG E
Sbjct: 597  VINPHAIPSRMTIGHLVECLLSKVATLLGQDGDATPFTDLTVEGVSAVLKERGFQSRGLE 656

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
             MY+GHTGR+L A ++LGPTYYQRLKHMV+DKIHSR RGPVQILTRQP EGRSRDGGLRF
Sbjct: 657  VMYHGHTGRKLQAQVYLGPTYYQRLKHMVEDKIHSRARGPVQILTRQPVEGRSRDGGLRF 716


>gi|83415461|gb|ABC17938.1| RNA polymerase II second largest subunit, partial [Spizellomyces
            punctatus]
          Length = 721

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/721 (65%), Positives = 569/721 (78%), Gaps = 26/721 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRL+LAGPLL GLFRMLFRKLT DV  Y +K VD+  + NL  AIK  TIT GL+YSLAT
Sbjct: 2    KRLNLAGPLLSGLFRMLFRKLTNDVTRYTRKVVDSRGEFNLTMAIKGGTITRGLQYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q      RAGVSQVLNR TYASTLSHLRRLN+PIGR+GKLAKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKFMQARAGVSQVLNRYTYASTLSHLRRLNTPIGRDGKLAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNL+LM Y+TVG +  PIL+FL E+  EN EEI+P  IP+ATK+FVN
Sbjct: 122  PAETPEGQACGLVKNLSLMSYVTVGHSVAPILDFLNEFNMENLEEITPDRIPKATKVFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+GIH DP+ LVKTLR LRR VDV  E+ +VRD+  KELR+YTD GR SRPLFIVE+ 
Sbjct: 182  GQWLGIHDDPDTLVKTLRNLRRNVDVTPELSIVRDVADKELRLYTDGGRISRPLFIVEED 241

Query: 637  RLLIKKRDIIALQQRESPE----DGGWHDLVAKGFIEYIDTEEEETTMISMTINDL---- 688
            + L   ++I AL+ +  P+       W+ L+ +G +EY+DTEEEET MI+M + DL    
Sbjct: 242  QTLSLTKEI-ALKTKTDPDTQMRQCDWNYLLEEGVVEYLDTEEEETVMIAMDVEDLKRVR 300

Query: 689  --------------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
                            ARL     YA  YTHCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 301  LLGQGQELQVRKDDATARLRSNAVYARNYTHCEIHPSMILGICASIIPFPDHNQSPRNTY 360

Query: 735  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
            QSAMGKQAMGI++TNYQ RMDT+A +L+YPQKPL TTRAME +HFR+LPAG NA+VAIA 
Sbjct: 361  QSAMGKQAMGIFLTNYQIRMDTMANILFYPQKPLATTRAMEFMHFRELPAGQNAVVAIAV 420

Query: 795  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
            YSGYNQEDS+IM+QSSIDRG FRS+++R Y D EKK+G +  E F +P R + + ++HG+
Sbjct: 421  YSGYNQEDSLIMSQSSIDRGLFRSMYYRVYMDTEKKVGMMASETFEKPSRDSCLRLKHGT 480

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGMV 912
            Y+KLD+DGL  PG RV GED+IIGKT PI +D A+ GQ  + +T+RD S  L+ +E G++
Sbjct: 481  YEKLDNDGLIAPGVRVGGEDIIIGKTVPIKEDSAEMGQRTAAHTKRDASTPLKSTENGII 540

Query: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            D+V++TTN  G +FVKVRVRSVR+PQ+GDKF+ RHGQKGTVG+TY QED+P++ EGI+PD
Sbjct: 541  DRVMVTTNEAGFKFVKVRVRSVRVPQMGDKFAXRHGQKGTVGITYRQEDLPFSAEGISPD 600

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032
            +I+NPHAIPSRMTIG L+EC++ K+A   G EGDATPFTD+TVD IS+AL + GYQ RGF
Sbjct: 601  LIINPHAIPSRMTIGHLVECLLSKLATLTGVEGDATPFTDLTVDQISRALEQFGYQKRGF 660

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E +YNGHTGR+L A +F GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGLR
Sbjct: 661  EVLYNGHTGRKLQAQVFFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLR 720

Query: 1093 F 1093
             
Sbjct: 721  L 721


>gi|221053005|ref|XP_002257877.1| DNA-directed RNA polymerase II second largest subunit [Plasmodium
           knowlesi strain H]
 gi|193807709|emb|CAQ38413.1| DNA-directed RNA polymerase II second largest subunit, putative
           [Plasmodium knowlesi strain H]
          Length = 1371

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/884 (52%), Positives = 639/884 (72%), Gaps = 19/884 (2%)

Query: 14  QEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPES 73
           +E+ DEEE IT+ED+W VI ++F   GLV QQ++S+++FI+  MQEI+DE   +EIRP++
Sbjct: 63  EEDHDEEERITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPALEIRPQA 122

Query: 74  QHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT 133
           Q+   +  +    +Y + FGQ+ L +P   E +     L+P+ ARLRNLTYS+ +Y+D+ 
Sbjct: 123 QYR-SEGDEQKNVMYALKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIE 181

Query: 134 KR--VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
           +   V+ +    + + +   + ++ +G++P+ML+S +C      E ++ ++GEC +DQGG
Sbjct: 182 QSTYVVDESSGSQILKDKFIYERINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGG 241

Query: 192 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR 251
           YFI+NG EKVL+AQE+M+ N +YVFKK+QP+K+ +VAE+RS  E +++  S   V+M ++
Sbjct: 242 YFIVNGGEKVLVAQERMAHNFIYVFKKKQPSKFGWVAEIRSQME-RSQATSAFSVKMKTK 300

Query: 252 TSAKGGS--SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLR 309
           T ++G S  +G  + ATLPYIRTEI + I+FRALG  +D+DIL+ I YDF D  M+  LR
Sbjct: 301 TGSRGSSVRTGGQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKMMINTLR 360

Query: 310 PSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKA 369
            +LEE      Q + LD+IGKRG TVG +R+KRI YAKE+L+KE+LPH+GTG   E+KK+
Sbjct: 361 ETLEECIDYPTQDICLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTGPGVESKKS 420

Query: 370 YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC 429
           Y+ GY+I+RLLL  LGR  EDDRDH+G KRLD+AGPL+   F   FRK+ +DV+  +Q+ 
Sbjct: 421 YFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVKRVLQRQ 480

Query: 430 VDNGKDVNLQFAIKAKT-ITSGLKYSLATGNWGQ-ANAAGTRAGVSQVLNRLTYASTLSH 487
           +DN K  ++  A+++ + IT G++Y LATGNWG+  +    R GV+QVLNRLTY+S LSH
Sbjct: 481 IDNNKPFDVAGAVRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSH 540

Query: 488 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
           LRRLN+P+GREGK+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+LM  I+VG++   I
Sbjct: 541 LRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNI 600

Query: 548 LEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVG 607
            EFL EWG E+ +E+ P ++ +  K+F+NG WVG     + L++TL  LRRR D++ E  
Sbjct: 601 FEFLLEWGLESLDEVPPQLMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCDISPEAS 660

Query: 608 VVRDIRLKELRIYTDYGRCSRPLFIVE----KQRLLIKKRDIIALQQRESPEDGGWHDLV 663
           +VRD+  KE++I+TD GR  RPL++V+    + +L + K  +  +     PE   W  L+
Sbjct: 661 IVRDVNSKEIKIFTDSGRAMRPLYVVKNVKGENKLKLTKEHVKNMMAY--PETYNWDYLI 718

Query: 664 AKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPF 723
            +G IEYID EEEETTMISM I+DL          Y + YTHCEIHPSLILGVCASIIPF
Sbjct: 719 QEGIIEYIDCEEEETTMISMFIDDLKTG-----TGYHNNYTHCEIHPSLILGVCASIIPF 773

Query: 724 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 783
            DHNQSPRNTYQSAMGKQAMGIYVTN+  R+DTLA++LYYPQ+PLV T+ ME+L FR+LP
Sbjct: 774 SDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLDTLAHLLYYPQRPLVCTKVMEYLRFRELP 833

Query: 784 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 843
           AGINAIVAI CY+GYNQEDS+IMNQSSIDRG FRS+F+R+Y  EEK+ G+L+ E F +P 
Sbjct: 834 AGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKPS 893

Query: 844 RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
                 ++ G Y KLD+DGL  PG RV G+D+IIGK +P  +DE
Sbjct: 894 IRYVKNLKRGDYTKLDNDGLIAPGIRVLGDDIIIGKVSPNIEDE 937



 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 184/286 (64%), Positives = 240/286 (83%)

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            ++D S+SLR +E G++D V+L++N+ G +F KV+VRSVRIPQIGDKF+SRHGQKGT+G+T
Sbjct: 1085 KKDCSLSLRENENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGIT 1144

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y  EDMP++ +G  PDII+NPHA+PSRMTIG L+EC+ GKVAA  G EGDATPF+ +TV 
Sbjct: 1145 YRTEDMPFSSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSKITVQ 1204

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS+ LH  GY+  G + +YNGH G+ L + IF+GPTYYQRLKHMV+DKIH+R RGP+ +
Sbjct: 1205 EISQRLHNLGYEKYGNDVLYNGHNGKMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTM 1264

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            +TRQP EGRSRDGGLRFGEMERDCMI+HG++  LKERLF++SDAYRVHVC++CGL  IA+
Sbjct: 1265 ITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLCCIAD 1324

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
            + KN++EC  C +KT+I Q++IPYACKLLFQELM MAI P+++ ++
Sbjct: 1325 INKNAYECTVCNSKTNISQIYIPYACKLLFQELMTMAIYPKLVLED 1370


>gi|55583690|gb|AAV53364.1| RNA polymerase II second largest subunit [Grifola sordulenta]
          Length = 712

 Score =  974 bits (2519), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/715 (65%), Positives = 562/715 (78%), Gaps = 36/715 (5%)

Query: 392  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGL 451
            RDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GL
Sbjct: 1    RDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGL 60

Query: 452  KYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS 510
            KYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+
Sbjct: 61   KYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNT 120

Query: 511  QWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQA 570
             WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  
Sbjct: 121  HWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEEWGLESLEENAHSSTP-C 179

Query: 571  TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 630
            TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPL
Sbjct: 180  TKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISAEVSVVRDIRERELRLYTDAGRVCRPL 239

Query: 631  FIVEKQRLLIKKRDIIAL-----QQRESPED----GGWHDLVAKGFIEYIDTEEEETTMI 681
            FIVE Q+LL++K+ I  L     +Q   P+D      W  L+  G IE +D EEEET MI
Sbjct: 240  FIVENQQLLLQKKHIEWLIRSKEEQTTKPKDLRFDYKWDHLIRDGVIELLDAEEEETVMI 299

Query: 682  SMTINDLVQARLH---------------------PEEAYADTYTHCEIHPSLILGVCASI 720
             MT  DL  +RL                      P  AY  T+THCEIHPS+ILGVCASI
Sbjct: 300  CMTPEDLENSRLQAAGIDPHANDGDFDPASRLKAPTNAY--TWTHCEIHPSMILGVCASI 357

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR
Sbjct: 358  IPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFR 417

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
            +LPAG NAIVAI CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E F 
Sbjct: 418  ELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGVQQVEAFE 477

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRR 898
            +P R  T+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI+ D E  GQ +R +T+R
Sbjct: 478  KPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIAPDSEELGQRTRTHTKR 537

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  L+ +E G++DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY 
Sbjct: 538  DVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYR 597

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
            QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++
Sbjct: 598  QEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESV 657

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
            S+ L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGP
Sbjct: 658  SQFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGP 712


>gi|56694316|gb|AAW22898.1| RNA polymerase II second largest subunit [Encephalartos barteri]
          Length = 527

 Score =  974 bits (2519), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/527 (88%), Positives = 490/527 (92%), Gaps = 10/527 (1%)

Query: 542  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
            SAA PILEFLEEW TENFEEISPAVIP ATKIFVNGCWVGIHRDP++LVKTLR+LRR+VD
Sbjct: 1    SAANPILEFLEEWSTENFEEISPAVIPNATKIFVNGCWVGIHRDPDLLVKTLRQLRRQVD 60

Query: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE-----SPED 656
            VNTEVGVVRDIRL ELR+YTDYGRCSRPLFIVE QRLLIKK DI  LQQR+     SP+D
Sbjct: 61   VNTEVGVVRDIRLSELRLYTDYGRCSRPLFIVENQRLLIKKPDIRRLQQRDQLPPPSPDD 120

Query: 657  G----GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT-YTHCEIHPS 711
                 GWH+LV KGFIEY+DTEEEETTMISMTI+DLV AR  P  A +   YTHCEIHPS
Sbjct: 121  ENTVRGWHELVTKGFIEYVDTEEEETTMISMTISDLVNARNSPPTAASIVKYTHCEIHPS 180

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            LILGVC SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPL TT
Sbjct: 181  LILGVCXSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLXTT 240

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF+RSYRDEEK+M
Sbjct: 241  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEKRM 300

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ 891
            GTLVKE+FGRP+R NT GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP++QDE+ GQ
Sbjct: 301  GTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPVTQDESGGQ 360

Query: 892  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
            A+RYT+RD S SLRHSE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKG
Sbjct: 361  AARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKG 420

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            TVGMTY QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT
Sbjct: 421  TVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 480

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            DVTVDNISKALHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRL
Sbjct: 481  DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRL 527


>gi|118364886|ref|XP_001015664.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila]
 gi|89297431|gb|EAR95419.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1226

 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1241 (43%), Positives = 771/1241 (62%), Gaps = 88/1241 (7%)

Query: 1    MMEDDYDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQ 58
            M E++  +E ++     D+E  E I Q+D W +I  YF++ GL   Q+ S++ FI++   
Sbjct: 1    MDEEESFFEGENSAPVYDDELNENIDQDDCWKIIDEYFKDNGLCSHQIKSYNHFIESL-- 58

Query: 59   EIVDESADIEIRPESQH---NPGQQSDFAETIYKISFGQIYLSKPMM------------- 102
             ++ E   IE+RP   +   N  +Q   ++T Y ++F +     P               
Sbjct: 59   PLIMEDFKIEVRPTENYMNSNKKEQQIRSQTSYTLTFDRPRKPLPPQKFHMERTFGWGRR 118

Query: 103  ---TESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE-------TQDF 152
                +S      ++P  AR+ +L Y   + + V      K  DG E  E        Q+ 
Sbjct: 119  GQDAQSSSHAQKIYPMMARISDLDYFVEIKIPVQLVRTIKHPDGTEQKELITSRDKNQNL 178

Query: 153  TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH 212
              +F  K+P+M++S YC+L   + +   + GEC +DQGGYFII GSEKV+IAQE+M+ N 
Sbjct: 179  ITLF--KLPVMVQSMYCSLAGENLEGRIKHGECQFDQGGYFIIKGSEKVIIAQERMAFNF 236

Query: 213  VYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRT 272
            VYVF+++ P K  ++AE+RS+ +  N   S   +++  R     G    Y R  L  I  
Sbjct: 237  VYVFQQKDP-KMPWIAEIRSIRDKTNAVQSKFALKLKLRD----GEYQLYARCKL--INE 289

Query: 273  EIPIIIVFRALGFV-ADKDILEHICYDFQD---TQMMELLRPSLEEAFVIQNQQVALDYI 328
            +IPI ++ +ALG V +DK+++E I Y+ +D    QMME+LR SL  A    N++ AL +I
Sbjct: 290  DIPIFVLLKALGCVESDKEMMERIFYNLKDPKNEQMMEMLRSSLLLAQHCNNKREALIFI 349

Query: 329  GKRGATVGVTRDKR-----IKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCA 383
            G R   +  T + R     ++ A++ L+  +LPH+GT +    KK ++ GY+I +LL  A
Sbjct: 350  GYR---INATTNYRGSQEAMQSAEDTLKLYLLPHIGTQESDNDKKLFFIGYMIQKLLNAA 406

Query: 384  LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV-----DNGKDVNL 438
            LG+  EDDRDHYG KRLD+AG L+  LF+   R   ++ +  +Q+ +     D  K +N+
Sbjct: 407  LGKTQEDDRDHYGKKRLDMAGALISQLFKERLRIFQKNAKKNLQQKINDISRDAQKSLNV 466

Query: 439  QFAI-KAKTITSGLKYSLATGNWGQ-ANAAGTRAGVSQVLNRLT-YASTLSHLRRLNSPI 495
               I   K I+  ++ +LATGNWGQ A+    + GV+QVL R T   +T+SH+RR+N+P+
Sbjct: 467  IVDIFDHKLISDHIRLALATGNWGQTADGEVVKTGVAQVLKRDTSLFATMSHMRRVNAPM 526

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA---YPILEFLE 552
                KLA+PRQLHN+ +G++CPAETPEGQ  G+VKNL+L+  +++G ++     I E LE
Sbjct: 527  KSAAKLARPRQLHNTHYGLICPAETPEGQKIGMVKNLSLLAQVSLGLSSQDNLKIQEQLE 586

Query: 553  EWGTE-NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRD 611
            E   + +   +    IP  TK+F NG W+G    PE ++   + +RR   ++    +VRD
Sbjct: 587  EQINQFDILNLKLEKIPYQTKVFFNGNWIGFTETPEQIIDVFKEIRRLQKIDG-FSIVRD 645

Query: 612  IRLKELRIYTDYGRCSRPLFIVE-----KQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
            I  KE+RIYTD GR  RP+F V+     K RL I K  + A+ Q+   E   +  L+ +G
Sbjct: 646  IINKEIRIYTDQGRGMRPVFTVQEICEGKNRLKITKSKLYAILQQF--EGKAFQKLIDEG 703

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT--YTHCEIHPSLILGVCASIIPFP 724
            FIE +D EEEE  +I++ IND      H ++       +THCEIHP++ILGVCAS+IPF 
Sbjct: 704  FIELLDVEEEEGALIAVDINDF----YHTDDPRRTNLPFTHCEIHPAMILGVCASVIPFG 759

Query: 725  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
             HNQ PRNT QSAMGKQAMG+  TN+  R+DTL ++LYYPQ  L ++++++++  + +P 
Sbjct: 760  HHNQGPRNTLQSAMGKQAMGLNSTNFHMRLDTLCHILYYPQIALASSKSLQYITAKDIPI 819

Query: 785  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK--MG-TLVKEDFGR 841
            G NA+VAIAC++GYNQEDS+I+NQS+IDRG FRS+ +R+Y+  EKK  MG   V E    
Sbjct: 820  GSNAVVAIACFTGYNQEDSIIINQSAIDRGLFRSILYRTYKTTEKKEHMGLNPVIEHIRF 879

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 901
            PD   T+     S+ KLD DG+ PPGT+V+GEDV+IGK   + + E  G   +Y  +D S
Sbjct: 880  PDEKKTIIPASYSFLKLDYDGIIPPGTQVTGEDVLIGKVVELPKTE--GSDKQY--KDVS 935

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
            +  R SE G VD V+L+ + DG+  VKV++RS RIPQIGDKF+SRHGQKGT GMT   ED
Sbjct: 936  LGCRRSEIGYVDTVILSEDKDGMYIVKVKLRSNRIPQIGDKFASRHGQKGTCGMTIRGED 995

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            +P+ +EGI  ++++NPH IPSRMTIG +IE +  K+++  G  GDATPF+ + + +I+  
Sbjct: 996  LPYNIEGIIAELVINPHCIPSRMTIGHMIEGLNSKLSSLKGIWGDATPFSGIKLQDIASE 1055

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
            LH  GYQ  G E +YN +TG RL+  I+ GPT+YQRL+H+VDDK++SR RGPV  + RQP
Sbjct: 1056 LHTYGYQRYGNEVLYNPYTGMRLSTQIYYGPTFYQRLRHLVDDKMYSRSRGPVVAIVRQP 1115

Query: 1082 AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNS 1141
              GRSR GGLRFGEMERDC+IAHG S+FLKER F  SD +R HVC  CGL A A++  + 
Sbjct: 1116 THGRSRGGGLRFGEMERDCIIAHGTSNFLKERTFGVSDQFRTHVCSRCGLFAKADVTNHK 1175

Query: 1142 FECRGC----KNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
            ++C GC    K    IVQV++PYA K L QELMAM I PR+
Sbjct: 1176 YDCTGCSQGDKKHYKIVQVYLPYAAKQLIQELMAMHIVPRI 1216


>gi|440296149|gb|ELP88990.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
            invadens IP1]
          Length = 1180

 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/1213 (42%), Positives = 751/1213 (61%), Gaps = 81/1213 (6%)

Query: 9    EEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQ--------NTMQEI 60
            ++  + +  DE   +  +  W +I  +F E GLV+QQL SF+ F++        +T +  
Sbjct: 2    QDNFENDITDEAGRVKPQWFWYLIEEHFRENGLVKQQLSSFNNFVKRVQDIVKTDTFKFE 61

Query: 61   VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
            V+ S  + + P  + +     +F ET Y+  + QI  S      +      +FP  AR+R
Sbjct: 62   VNNSDTLRVNPADEES--HTLEFDETKYR--YPQIKTS-----PNSNVKEKIFPHEARIR 112

Query: 121  NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE-KDL 179
             LTY++ L ++V   + + G   +E  +T DF    +  +P ML+S  C L    +  D+
Sbjct: 113  GLTYASELKINVKDTIYRGGKLVDE--KTSDFFD--LASIPAMLKSKICRLVSIVKLNDI 168

Query: 180  TELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNR 239
             +  EC ++QGGYF++ GSEKV+IAQEKMS N V VF+     KY +   + S+A   N 
Sbjct: 169  IQSDECQFEQGGYFVVKGSEKVVIAQEKMSPNTVLVFEGSDMAKYPFEGNINSLA--MND 226

Query: 240  PPSTMFVRMLSRTSAKGGSSGQYIRATLPYIR-----TEIPIIIVFRALGFVADKDILEH 294
               +  +RM      K     + ++  +P +       ++P++++F ALG+  D+ I++ 
Sbjct: 227  EVRSHKIRM---DFPKNQEMNKDLKVKVPMLTMSRMMCDVPLVLLFVALGYETDEKIVDA 283

Query: 295  ICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRG----------ATVGVTRDKRIK 344
            IC+D +D +M  ++  +++ A      + A ++IG+             T  + + +R  
Sbjct: 284  ICFDEKDNEMYNIVTTAIQ-ANEYTTVEKAREWIGRNSKRSNKEGDEIVTENIEKMRRDG 342

Query: 345  YAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 404
             +K  L+ ++LPH+G  +F    KAY+ GY+ +  L    G+R  DDRDH   KR+ + G
Sbjct: 343  TSK--LKTDLLPHIGVDNF--ESKAYFLGYMTNHFLSVYTGKRNGDDRDHLARKRMLMTG 398

Query: 405  PLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA--IKAKTITSGLKYSLATGNWGQ 462
             L+  LF+   +KLT+  R  +Q  V + K  N+ +     +K IT   K +L+TGNW Q
Sbjct: 399  GLMMELFKNALKKLTKYARNKIQDIVSHKKSDNIDYGKVYNSKIITDDCKKALSTGNWPQ 458

Query: 463  ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE 522
                  R GV+QVLNR+T+ S L++LR+++SP+  + K  KPRQLHN+QWG +CPAETPE
Sbjct: 459  PGGKEARHGVAQVLNRITFTSALAYLRKISSPVEGKRKTQKPRQLHNTQWGYICPAETPE 518

Query: 523  GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV---IPQATKIFVNGCW 579
            G+ CGLVK L+LM  ITV      + E  ++  ++  ++IS  +   +   TK+F+NG W
Sbjct: 519  GEQCGLVKMLSLMAQITVALPLQNVQEIKDQLNSQYCKDISECLGHNMNTTTKVFLNGSW 578

Query: 580  VGIHRDPEMLVKTLRRLRRRVD---VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            +    +P+ L+  L++ R+  +   V   + +V D   +ELRIYTD GRC+RPLF V   
Sbjct: 579  LKCTDEPQKLLDDLKQYRKNSEKGKVKKVMSMVLDQLHRELRIYTDAGRCTRPLFTVSNN 638

Query: 637  R----LLIKKRDI--IALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTIN 686
                 + ++K  I  + ++   + E+G     W + + KG IEY+D +EEE +MI+M  +
Sbjct: 639  NGELGINLQKEQIKQLCIEMGRNDENGQKKKLWANFLTKGIIEYVDADEEEMSMIAMFPS 698

Query: 687  DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746
            DL+     P    A  YTHCEI+P+LI+G+  SIIPFPDHNQSPRNTYQ AMGKQA+G+Y
Sbjct: 699  DLLNRGSGP----AVNYTHCEINPALIMGILGSIIPFPDHNQSPRNTYQCAMGKQAIGVY 754

Query: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806
             +NYQ RMD+L +VL+YPQKPLV+T+  ++  F ++PAGINA+VA+  YSGYNQEDSV+M
Sbjct: 755  ASNYQLRMDSLGHVLFYPQKPLVSTKGADYAKFGEIPAGINAVVAVCVYSGYNQEDSVMM 814

Query: 807  NQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPP 866
            NQ SIDRG FRS+ F+++  + KK G      F RP     +      Y  LD DG+APP
Sbjct: 815  NQGSIDRGLFRSMCFKTFLKDYKK-GEETDLMFFRPCEGTDLK-DVSKYQHLDVDGVAPP 872

Query: 867  GTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
            GT+V  +DVIIG        E +  + RY  R         E G+VDQV++ T  +  + 
Sbjct: 873  GTKVRADDVIIGAFYKGKSGELKDCSMRYKPR---------ENGVVDQVVVATTENRAKM 923

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
            +K+++RS+RIPQIGDKFSSRHGQKGTVGMTY QEDMP+ +EGI PDII+NPHAIPSRMT+
Sbjct: 924  IKIKMRSIRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFNIEGINPDIIMNPHAIPSRMTV 983

Query: 987  GQLIECIMGKVAAHMGKEGDATPFT-DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 1045
            GQL+EC++GKV A +G   + TPF   +TVD IS  LHK  YQ  G+E +++GHTGR+L 
Sbjct: 984  GQLVECLLGKVGALVGDVQNGTPFQPGLTVDVISDRLHKLKYQRWGYEALFSGHTGRKLD 1043

Query: 1046 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 1105
             ++++GPTYYQRLKH+VDDK+H R  GP   LTRQP EGRSRDGGLR GEMERDCMI+HG
Sbjct: 1044 TLVYMGPTYYQRLKHLVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISHG 1103

Query: 1106 ASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLL 1165
             S  L+ERLF  SD Y+V+VC+ C + A+AN + ++FEC  CK++T I +V IPYA KLL
Sbjct: 1104 MSALLRERLFLASDRYQVYVCDKCHMPAVANQRSSTFECSCCKDRTHISKVEIPYAAKLL 1163

Query: 1166 FQELMAMAIAPRM 1178
            FQELM+MAI PR+
Sbjct: 1164 FQELMSMAICPRI 1176


>gi|55583686|gb|AAV53362.1| RNA polymerase II second largest subunit [Fomitopsis pinicola]
          Length = 704

 Score =  973 bits (2515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/705 (66%), Positives = 560/705 (79%), Gaps = 24/705 (3%)

Query: 407  LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANA 465
            L  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +
Sbjct: 1    LANLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGLKYSLATGNWGDQKKS 60

Query: 466  AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQA 525
              ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA
Sbjct: 61   MASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQA 120

Query: 526  CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRD 585
            CGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRD
Sbjct: 121  CGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHRD 179

Query: 586  PEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDI 645
            P  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIV+ Q LL+ K+ I
Sbjct: 180  PANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVDDQSLLLTKQHI 239

Query: 646  IALQ--QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE--EAYAD 701
              L   + ++  D  W  LV  G +E +D EEEET MI MT +DL  +RL  +  +  AD
Sbjct: 240  QWLSNGKDDADNDFKWDSLVKSGVVELLDAEEEETVMICMTPDDLETSRLQSQGVDTTAD 299

Query: 702  ----------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 745
                            T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI
Sbjct: 300  GEFDPATRLKAPTNIHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGI 359

Query: 746  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVI 805
            Y+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVI
Sbjct: 360  YLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVI 419

Query: 806  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 865
            MNQSSIDRG FRS+++RSY D EKK G    E F +P R  T+ M+HG+YDKL+DDGL  
Sbjct: 420  MNQSSIDRGLFRSMYYRSYMDLEKKNGIQQLEKFEKPTRETTLRMKHGTYDKLEDDGLIA 479

Query: 866  PGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADG 923
            PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++DQVL+TTNA+G
Sbjct: 480  PGTGVNGEDIIIGKTAPIPPDSEELGQRTRNHTRRDVSTPLKSTESGIIDQVLITTNAEG 539

Query: 924  LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSR 983
             +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPDI++NPHAIPSR
Sbjct: 540  QKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSR 599

Query: 984  MTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRR 1043
            MTIG L+EC++ KVA  +G EGDATPFTD+TVD++S  L + GYQ RG E MY+GHTGR+
Sbjct: 600  MTIGHLVECLLSKVATLIGNEGDATPFTDLTVDSVSGFLRQRGYQSRGLEVMYHGHTGRK 659

Query: 1044 LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
            L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRD
Sbjct: 660  LQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRD 704


>gi|55583694|gb|AAV53366.1| RNA polymerase II second largest subunit [Marasmius alliaceus]
          Length = 705

 Score =  972 bits (2513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/706 (66%), Positives = 561/706 (79%), Gaps = 25/706 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYMQKCVETHKEFNLTAAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-TT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+R+LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIRKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIAL--QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 689
            IV+ Q+L+++K+ +  L   Q +   +  W  LV  G IE +D EEEET MISMT  DL 
Sbjct: 240  IVDNQQLVLQKKHVKWLLNGQNDEGSEFKWEHLVKHGIIELLDAEEEETVMISMTPEDLE 299

Query: 690  QARLH-----PEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 730
             +RL      P E                A T+THCEIHPS+ILG+CASIIPFPDHNQSP
Sbjct: 300  NSRLQQQGVDPHENDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSP 359

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIV
Sbjct: 360  RNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV 419

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AI CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M
Sbjct: 420  AILCYSGYNQEDSVIMNQSSVDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLRM 479

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 908
            +HG+YDK++DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E
Sbjct: 480  KHGTYDKIEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTE 539

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
            +G+VDQVL+TTN++G +FVKVRVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 540  SGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEG 599

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            I PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ
Sbjct: 600  IVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSMFLRQKGYQ 659

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1074
             RG E M++GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGPV
Sbjct: 660  SRGLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPV 705


>gi|396941905|gb|AFN89670.1| RNA polymerase II, partial [Babjeviella inositovora]
          Length = 758

 Score =  969 bits (2506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/757 (60%), Positives = 578/757 (76%), Gaps = 34/757 (4%)

Query: 306  ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
            E+L+P +EE FVIQ+++VALD+IG+RG+ +G+ R+KRI+YAK+IL KE+LPH+   +  E
Sbjct: 1    EMLKPCVEEGFVIQDREVALDFIGRRGSALGIRREKRIQYAKDILTKELLPHITQEEGFE 60

Query: 366  TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
             +KA++ GY+++RLLLCAL R+  DDRDH+G KRLDLAGPLL  LFR+LFRKL+RD+  +
Sbjct: 61   NRKAFFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRH 120

Query: 426  VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
            +QKCV+  K+ +L  A+K+ TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY ST
Sbjct: 121  MQKCVETNKEFHLTLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYTST 180

Query: 485  LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
            LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+ +
Sbjct: 181  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTTS 240

Query: 545  YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
             PI+ FLEEWG E  E+      P +T++FVNG WVG HR+P MLV T+R LRR+ D++ 
Sbjct: 241  EPIIYFLEEWGMEPLEDYVAHHSPDSTRVFVNGVWVGTHREPAMLVNTMRSLRRKGDISP 300

Query: 605  EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG 657
            EV ++RDIR KE +I+T  GR   PLF+V        K +L +    +    +     D 
Sbjct: 301  EVSIIRDIRKKEFKIFTXAGRIXXPLFVVXDDXEXPXKGQLXLXXSQVNXXXEPAKESDD 360

Query: 658  --------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA----------- 698
                    GW DL+  G +EY+D EEEET MI+MT  DL  AR    EA           
Sbjct: 361  VDMEEQKYGWDDLLNSGVVEYVDAEEEETIMIAMTPEDLDSARAEITEAEELDPAKRIKP 420

Query: 699  ----YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
                   T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG++ TNY  RM
Sbjct: 421  AFNPNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFATNYSVRM 480

Query: 755  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
            DT+A +LYYPQKPL TTR+ME L FR+LPAG NA+VAIACYSGYNQEDS+IMNQSSIDRG
Sbjct: 481  DTMANILYYPQKPLATTRSMEFLKFRELPAGQNAVVAIACYSGYNQEDSMIMNQSSIDRG 540

Query: 815  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD-DDGLAPPGTRVSGE 873
             FRSLFFR+Y D+E ++G  V E+F +P RSNT+ ++HG+Y+KLD +DGL  PG RVSGE
Sbjct: 541  LFRSLFFRTYMDKETRVGISVVEEFEKPLRSNTLRLKHGTYEKLDEEDGLVAPGVRVSGE 600

Query: 874  DVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRV 931
            D+IIGKTTPIS D E  GQ ++Y T+RD S  LR +E+G+VDQV+LTTN DG +FVKVR+
Sbjct: 601  DIIIGKTTPISPDAEELGQRTKYHTKRDASTPLRSTESGIVDQVVLTTNGDGAKFVKVRM 660

Query: 932  RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIE 991
            R+ + PQIGDKF+SRHGQKGT+G+TY  EDMP++ EGI PD+I+NPHAIPSRMT+  LIE
Sbjct: 661  RTTKTPQIGDKFASRHGQKGTIGVTYRHEDMPFSSEGIVPDLIINPHAIPSRMTVAHLIE 720

Query: 992  CIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            C++ KV+A  G EGDA+PFTDVTV+ +SK L + GYQ
Sbjct: 721  CLLSKVSALRGYEGDASPFTDVTVEAVSKLLRESGYQ 757


>gi|258596921|ref|XP_001349662.2| DNA-directed RNA polymerase II second largest subunit, putative
           [Plasmodium falciparum 3D7]
 gi|254688481|gb|AAC71932.3| DNA-directed RNA polymerase II second largest subunit, putative
           [Plasmodium falciparum 3D7]
          Length = 1340

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/893 (52%), Positives = 637/893 (71%), Gaps = 26/893 (2%)

Query: 4   DDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
           +D+   EQ    +++  E+IT++D+W VI ++F   GLV QQ++S+++FI+  MQEI+DE
Sbjct: 12  NDFVKTEQLSDNDKNPNEQITEDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDE 71

Query: 64  SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
              IEIRP+ Q+   +  +    IY + FGQ+ L +P   E +     L+P+ ARLRNLT
Sbjct: 72  HPKIEIRPQPQYRTDRDEN-DNIIYSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLT 130

Query: 124 YSAPLYVDVTKR--VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 181
           YS+ +Y+D+ +   +I +      + E   + ++ +G++P+ML+S +C      E ++ +
Sbjct: 131 YSSAIYIDIEQSTYIIDEVTKKPVLKEKFIYERINLGRIPLMLKSMFCWTKGLPENEIAD 190

Query: 182 LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP 241
           +GEC YDQGGYFI+NG EKVL+AQE+M+ N +YVFKK+QP+K+ +VAE+RS  E +++  
Sbjct: 191 MGECSYDQGGYFIVNGGEKVLVAQERMANNFIYVFKKKQPSKFGWVAEIRSQME-RSQAT 249

Query: 242 STMFVRMLSRTSAKGGS------SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHI 295
           S   V+M +R+   GGS      SG  + ATLPYIRTEI + I+FRALG  +D+DIL+ I
Sbjct: 250 SGFSVKMKTRS---GGSQYGSNKSGGQLVATLPYIRTEISVGILFRALGCTSDRDILQRI 306

Query: 296 CYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEML 355
            YDF D  M+  LR +LEE      Q V LD+IGKRG TVG +R+KRI YAKE+L+KE+L
Sbjct: 307 VYDFNDKLMINALRETLEECIEYPTQDVCLDFIGKRGPTVGASREKRILYAKELLRKEVL 366

Query: 356 PHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 415
           PH+GT    E+KK+Y+ GY+I+RLLL  LGR  EDDRDH+G KRLD+AGPL+   F   F
Sbjct: 367 PHMGTHPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYF 426

Query: 416 RKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT-ITSGLKYSLATGNWGQ-ANAAGTRAGVS 473
           RK+ +DVR  +Q+ +DN K  ++  AI++ + IT G++Y LATGNWG+  +    R GV+
Sbjct: 427 RKMAKDVRRVLQRQIDNNKPFDVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVA 486

Query: 474 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
           QVLNRLTY+S LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+
Sbjct: 487 QVLNRLTYSSCLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLS 546

Query: 534 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593
           LM  I+VG++   I EFL EWG E+ +E+ P ++ +  K+F+NG WVG     + L++TL
Sbjct: 547 LMCDISVGTSTNNIYEFLTEWGLESLDEVPPELMKEKVKLFLNGKWVGCFNQIDNLIETL 606

Query: 594 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE----KQRLLIKKRDIIALQ 649
             LRRR D++ E  +VRD+  KE++I+TD GR  RPL++V+    + +L + K  +  ++
Sbjct: 607 YELRRRCDISPEASIVRDVNSKEIKIFTDSGRAMRPLYVVKNVNGENKLKLTKEHVNNIE 666

Query: 650 QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIH 709
           +   PE   W  L+ +G IEYID EEEETTMISM I+DL          Y + +THCEIH
Sbjct: 667 KY--PETYNWDYLIQEGIIEYIDCEEEETTMISMFIDDLKTG-----TGYYNNFTHCEIH 719

Query: 710 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
           PSLILGVCASIIPF DHNQSPRNTYQSAMGKQAMGIYVTN+  R+DTLA++LYYPQKPLV
Sbjct: 720 PSLILGVCASIIPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLDTLAHLLYYPQKPLV 779

Query: 770 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 829
            T+ ME+L FR+LPAGINAIVAI CY+GYNQEDS+IMNQSSIDRG FRS+F+R+Y  EEK
Sbjct: 780 CTKVMEYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEK 839

Query: 830 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
           + G+L+ E F +P       ++ G Y KLDDDGL  PG RV G+D+IIGK +P
Sbjct: 840 QQGSLIIESFEKPSVRVVKNLKRGDYTKLDDDGLIAPGIRVLGDDIIIGKVSP 892



 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 186/286 (65%), Positives = 240/286 (83%)

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            ++D S+SLR +E G++D V+L++N+ G +F KV+VRSVRIPQIGDKF+SRHGQKGT+G+T
Sbjct: 1054 KKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGIT 1113

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y  EDMP++  GI PDII+NPHA+PSRMTIG L+EC+ GKVAA  G EGDATPF+ +TV 
Sbjct: 1114 YRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSKITVQ 1173

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS+ LH  GY+  G E +YNGH GR L + IF+GPTYYQRLKHMV+DKIH+R RGP+ +
Sbjct: 1174 EISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTM 1233

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            +TRQP EGRSRDGGLRFGEMERDCMI+HG++  LKERLF++SDAYRVHVC++CGL  IA+
Sbjct: 1234 ITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLCCIAD 1293

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
            + KN++EC  C +KT+I Q+++PYACKLLFQELM MAI P+++ ++
Sbjct: 1294 INKNAYECTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVLED 1339


>gi|390371063|dbj|GAB64944.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Plasmodium
           cynomolgi strain B]
          Length = 1335

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/898 (52%), Positives = 641/898 (71%), Gaps = 24/898 (2%)

Query: 5   DYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
           +Y + +   +E+ DEEE IT+ED+W VI ++F   GLV QQ++S+++FI+  MQEI+DE 
Sbjct: 13  EYMHPDAPLEEDHDEEERITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEH 72

Query: 65  ADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY 124
             IEIRP+ Q+    + D    +Y + FGQ+ L +P   E +     L+P+ ARLRNLTY
Sbjct: 73  PHIEIRPQPQYR-SDRDDNKNVMYSLKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTY 131

Query: 125 SAPLYVDVTKR--VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL 182
           S+ +Y+D+ +   V+++G   + + E   + ++ +G++P+ML+S +C      E ++ ++
Sbjct: 132 SSAIYIDIEQSTYVVEEGSKNQILKEKFVYERINLGRIPLMLKSMFCWTKGLPESEIADM 191

Query: 183 GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS 242
           GEC +DQGGYFI+NG EKVL+AQE+M+ N +YVFKK+QP+K+ +VAE+RS  E +++  S
Sbjct: 192 GECAFDQGGYFIVNGGEKVLVAQERMAHNFIYVFKKKQPSKFGWVAEIRSQME-RSQATS 250

Query: 243 TMFVRMLSRTSAKGGSSGQY-------IRATLPYIRTEIPIIIVFRALGFVADKDILEHI 295
              V+M ++T ++G   G         + ATLPYIRTEI + I+FRALG  +D+DIL+ I
Sbjct: 251 AFSVKMKTKTGSRGSGGGGSSARTGGQLVATLPYIRTEISVGILFRALGCTSDRDILQRI 310

Query: 296 CYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEML 355
            YDF D  M+  LR +LEE      Q + LD+IGKRG TVG +R+KRI YAKE+L+KE+L
Sbjct: 311 VYDFNDKMMINTLRETLEECIDYPTQDICLDFIGKRGPTVGASREKRILYAKELLRKEVL 370

Query: 356 PHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 415
           PH+GTG   E+KK+Y+ GY+I+RLLL  LGR  EDDRDH+G KRLD+AGPL+   F   F
Sbjct: 371 PHMGTGPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYF 430

Query: 416 RKLTRDVRAYVQKCVDNGKDVNLQFAIKAKT-ITSGLKYSLATGNWGQ-ANAAGTRAGVS 473
           RK+ +DV+  +Q+ +DN K  ++  A+++ + IT G++Y LATGNWG+  +    R GV+
Sbjct: 431 RKMAKDVKRVLQRQIDNNKPFDVAGAVRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVA 490

Query: 474 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 533
           QVLNRLTY+S LSHLRRLN+P+GREGK+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+
Sbjct: 491 QVLNRLTYSSCLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLS 550

Query: 534 LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593
           LM  I+VG++   I EFL EWG E+ +E+ P ++ +  K+F+NG WVG     + L++TL
Sbjct: 551 LMCDISVGTSTNNIFEFLLEWGLESLDEVPPQLMKEKVKLFLNGKWVGCFNQIDNLIETL 610

Query: 594 RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE----KQRLLIKKRDIIALQ 649
             LRRR D++ E  +VRD+  KE++I+TD GR  RPL++V+    + +L + K  +  + 
Sbjct: 611 YELRRRCDISPEASIVRDVNSKEIKIFTDSGRAMRPLYVVKNDKGENKLKLTKEHVKNMM 670

Query: 650 QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIH 709
               PE   W  L+ +G IEYID EEEETTMISM I+DL          Y + YTHCEIH
Sbjct: 671 AY--PETYNWDYLIQEGIIEYIDCEEEETTMISMFIDDLKTG-----TGYHNNYTHCEIH 723

Query: 710 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
           PSLILGVCASIIPF DHNQSPRNTYQSAMGKQAMGIYVTN+  R+DTLA++LYYPQ+PLV
Sbjct: 724 PSLILGVCASIIPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLDTLAHLLYYPQRPLV 783

Query: 770 TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 829
            T+ ME+L FR LPAGINAIVAI CY+GYNQEDS+IMNQSSIDRG FRS+F+R+Y  EEK
Sbjct: 784 CTKVMEYLRFRDLPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEK 843

Query: 830 KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
           + G+L+ E F +P       ++ G Y KLD+DGL  PG RV G+D+IIGK +P  +DE
Sbjct: 844 QQGSLIIESFEKPSIRCVKNLKRGDYTKLDNDGLIAPGIRVLGDDIIIGKVSPNIEDE 901



 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 184/286 (64%), Positives = 240/286 (83%)

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            ++D S+SLR +E G++D V+L++N+ G +F KV+VRSVRIPQIGDKF+SRHGQKGT+G+T
Sbjct: 1049 KKDCSLSLRENENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGIT 1108

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y  EDMP++ +G  PDII+NPHA+PSRMTIG L+EC+ GKVAA  G EGDATPF+ +TV 
Sbjct: 1109 YRTEDMPFSSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSKITVQ 1168

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS+ LH  GY+  G + +YNGH G+ L + IF+GPTYYQRLKHMV+DKIH+R RGP+ +
Sbjct: 1169 EISQRLHNLGYEKYGNDVLYNGHNGKMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTM 1228

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            +TRQP EGRSRDGGLRFGEMERDCMI+HG++  LKERLF++SDAYRVHVC++CGL  IA+
Sbjct: 1229 ITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLCCIAD 1288

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
            + KN++EC  C +KT+I Q++IPYACKLLFQELM MAI P+++ ++
Sbjct: 1289 INKNAYECTVCNSKTNISQIYIPYACKLLFQELMTMAIYPKLVLED 1334


>gi|56694342|gb|AAW22911.1| RNA polymerase II second largest subunit [Sciadopitys verticillata]
          Length = 514

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/517 (88%), Positives = 487/517 (94%), Gaps = 3/517 (0%)

Query: 542  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
            S+A PILE LEEW TENFEEISPA IPQ+TKIFVNGCWVGIHRDP++LV+TLR+LRR++D
Sbjct: 1    SSANPILEXLEEWSTENFEEISPAAIPQSTKIFVNGCWVGIHRDPDLLVRTLRQLRRQID 60

Query: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 661
            VN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK DI  L  R +P DG WH+
Sbjct: 61   VNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLRIKKSDINNL--RANPXDG-WHE 117

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
            LVA G+IEY+DTEEEETTMISMTIN LV AR++P +AY+ TYTHCEIHP LILGVCASII
Sbjct: 118  LVAXGYIEYVDTEEEETTMISMTINXLVNARINPHDAYSHTYTHCEIHPXLILGVCASII 177

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 178  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 237

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+FGR
Sbjct: 238  LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGR 297

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 901
            P+R NT  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI+QDE+ GQA+RYTRRD S
Sbjct: 298  PNRENTQNMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESGGQANRYTRRDQS 357

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
             SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHG KGTVGMTYTQED
Sbjct: 358  TSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGXKGTVGMTYTQED 417

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+ISKA
Sbjct: 418  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKA 477

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            LHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 478  LHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 514


>gi|351518439|gb|AEQ39960.1| RNA polymerase II second largest subunit [Lecophagus sp. ATCC 56071]
          Length = 731

 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/735 (63%), Positives = 562/735 (76%), Gaps = 44/735 (5%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLF+KL +DV  Y+QKCV++ ++ BL  A+K+ TIT GLKYSLAT
Sbjct: 2    KRLDLAGPLLANLFRMLFKKLVKDVFRYLQKCVESNREFBLTLAVKSNTITMGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q   A  +AGVSQVLNR T+ASTLSHLRR N PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGDQKKPASAKAGVSQVLNRYTFASTLSHLRRTNXPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YITVG+   PI  F+E+   E  E   P   P ATK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSYITVGTPGEPISIFMEQRNMEPLESFEPQRSPNATKVFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 634
            G W+G+HRDP  L +T+  LRR   ++ EV V+RDIR +E +I+TD GR  RPLFIV+  
Sbjct: 182  GTWIGVHRDPASLYRTVLSLRRSNVISHEVSVIRDIRDREFKIFTDAGRVCRPLFIVDND 241

Query: 635  -----KQRLLIKKRDIIALQQRESPEDG------GWHDLVAKGFIEYIDTEEEETTMISM 683
                 K  L+++K  I  L+  E  E G      GW  L+  G +EY+D EEEET MISM
Sbjct: 242  PGSTRKGELVLQKNHIEKLE--EDKEKGSDEQKYGWQGLIEDGCVEYVDAEEEETIMISM 299

Query: 684  TINDL-----------------------VQARLHPEEAYADTYTHCEIHPSLILGVCASI 720
            T  DL                       V+A+++P    A T+THCEIHPS+ILG+CASI
Sbjct: 300  TPEDLEISRQVQAGFEVPVDDSGDMAKRVKAKVNPN---AHTWTHCEIHPSMILGICASI 356

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L FR
Sbjct: 357  IPFPDHNQSPRNTYQSAMGKQAMGVFLTNFNERMDTMANILYYPQKPLATTRSMEFLKFR 416

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
            +LPAG NAIV I CYSGYNQEDSVIMNQSSIDRG FRSLFFRSY + E ++G  V E F 
Sbjct: 417  ELPAGQNAIVGIMCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYMNFETRIGMQVVEAFE 476

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRR 898
            +P RSNT+ ++HG+YDKLDDDGL  PG RVSG D+IIGKT P+ QD E  GQ +++ TRR
Sbjct: 477  KPTRSNTLRLKHGTYDKLDDDGLIAPGVRVSGGDIIIGKTAPMPQDSEELGQRTKFHTRR 536

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  LR +E G+VDQVLLTTNA+G++FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY 
Sbjct: 537  DVSTPLRSTENGIVDQVLLTTNAEGVKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYR 596

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
            QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV+N+
Sbjct: 597  QEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVENV 656

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
            SK L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+HMVDDKIH+R RGP+QILT
Sbjct: 657  SKLLREHGYQSRGFEVMYNGHTGRKLIIQVFLGPTYYQRLRHMVDDKIHARARGPIQILT 716

Query: 1079 RQPAEGRSRDGGLRF 1093
            RQP EGR+RDGGLRF
Sbjct: 717  RQPVEGRARDGGLRF 731


>gi|55273985|gb|AAV48863.1| RNA polymerase II second largest subunit [Coprinus comatus]
          Length = 699

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/700 (66%), Positives = 555/700 (79%), Gaps = 25/700 (3%)

Query: 407  LGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANA 465
            L  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +
Sbjct: 1    LANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKS 60

Query: 466  AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQA 525
              ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQA
Sbjct: 61   MSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQA 120

Query: 526  CGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRD 585
            CGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRD
Sbjct: 121  CGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRD 179

Query: 586  PEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDI 645
            P  LVKT+++LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIVE Q+LL++K+ I
Sbjct: 180  PANLVKTIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLQKKHI 239

Query: 646  IALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPE 696
              L     +  E+  W  L+  G IE +D EEEET MISMT  DL  +RL       H  
Sbjct: 240  RWLNNGYNDEGEEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDTHAN 299

Query: 697  EA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
            +             +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG
Sbjct: 300  DGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 359

Query: 745  IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
            IY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSV
Sbjct: 360  IYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSV 419

Query: 805  IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLA 864
            IMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL 
Sbjct: 420  IMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKLEDDGLI 479

Query: 865  PPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNAD 922
             PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++
Sbjct: 480  APGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSE 539

Query: 923  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 982
            G +FVKVRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPS
Sbjct: 540  GQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPS 599

Query: 983  RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR 1042
            RMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR
Sbjct: 600  RMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEIMYHGHTGR 659

Query: 1043 RLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1082
            +L A ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP 
Sbjct: 660  KLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPV 699


>gi|55584696|gb|AAV53579.1| RNA polymerase II second largest subunit [Collybia tuberosa]
          Length = 700

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/700 (66%), Positives = 554/700 (79%), Gaps = 25/700 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q
Sbjct: 181  GVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQ 240

Query: 637  RLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 694
            +L ++K+ +  +     +  ED  W  LV  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241  QLALQKKHVRYINNGVNDEGEDYKWEQLVKGGIIELLDAEEEETVMISMTPEDLENSRLT 300

Query: 695  PEEA-------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
               A                    + T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301  QSGADPQVNDAEFDPAARLKAGINSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361  SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421  SGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPVRDNTLRMKHGTY 480

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 913
            DKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VD
Sbjct: 481  DKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVD 540

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QVL+TTN++G +FVKVRVRS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541  QVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDI 600

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601  IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLE 660

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
             MY+GHTGR+L A ++LGPTYYQRLKHMVDDKIHSR RGP
Sbjct: 661  VMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGP 700


>gi|145525932|ref|XP_001448777.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416343|emb|CAK81380.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1203

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1206 (42%), Positives = 760/1206 (63%), Gaps = 71/1206 (5%)

Query: 13   QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
            Q+E+EDE +++  +D W V+  +F+  GLV QQ++S++ F++N ++ +        +R +
Sbjct: 18   QEEDEDENQKLDNDDIWKVLHMFFQTHGLVSQQINSYESFVENIIKYVRGHEGTFVVRVK 77

Query: 73   SQHNPGQQSDF-AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 131
             Q+   ++ D   E +Y+    + ++ K  +   D     +FP  ARLR+LTYS  L +D
Sbjct: 78   PQYKEEERMDAQTEYLYQFQIQRCFMGKKNI-HIDKFEEEIFPMIARLRDLTYSRQLKID 136

Query: 132  --VTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL------G 183
              VT +   K     E    Q F  +   K+PIM+RS +C+L ++  KD  ++      G
Sbjct: 137  LEVTMQQRNKRDGSIEEKSKQTFKGLPFFKLPIMVRSRFCSLPKDP-KDPEQIQQRIQSG 195

Query: 184  ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS- 242
            EC +DQGGYFI+ GSEKV++AQE+++ N V VFK +  NK  +VAE+RS  +  + P + 
Sbjct: 196  ECGFDQGGYFILRGSEKVIVAQERIANNVVLVFKSKIVNK-PWVAEIRSQPDLWSNPNNF 254

Query: 243  TMFVRMLSRTSAKGGSSGQYIRATLPYIRTE--IPIIIVFRALGFVADKDILEHICYDFQ 300
             + +R +  T          IR ++    +   IP+  +FRALG  +D++ILE I Y+ +
Sbjct: 255  KVELRYIQNTPV--------IRCSVKQFNSTQGIPLFTLFRALGISSDQEILERIVYNLE 306

Query: 301  DTQM---MELLRPSLEEAFVIQNQQVALDYIGKR-GATVGVTRDKRIKYAKEILQKEMLP 356
            D QM   +E+L  SL+E    +++++ L +IG +         +  I+ AK+++ K +LP
Sbjct: 307  DEQMGPMLEMLYGSLQEGGEYEDEELCLRWIGNKIKKAENQDPETLIQEAKKLINKNILP 366

Query: 357  HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFR 416
            H+G       +KAY+ GYI+HRLL  +LG+  +DDRDHYG KRLD+AG ++ G+F+  F 
Sbjct: 367  HIGVSSESRDRKAYFIGYIVHRLLNASLGKTDQDDRDHYGKKRLDMAGAMMMGVFKTSFE 426

Query: 417  KLTRDVRAYVQKCVDNGKDVNLQFAIKA----KTITSGLKYSLATGNWGQANAAGT-RAG 471
               ++ +  ++K + NG+++     IK+    + I+  +  +LATGNWG++      + G
Sbjct: 427  SFKQNAKKALEKYI-NGENMRQPDDIKSFFDGEQISKDIDNALATGNWGRSKEGQVVKTG 485

Query: 472  VSQVLNRLT-YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVK 530
            V+Q L R T   +TLSHLRR+N+PI  + KL+KPRQLHN+ +G +CPAETPEGQ  G+VK
Sbjct: 486  VAQTLKRETSLFATLSHLRRMNAPINPQMKLSKPRQLHNTHFGFICPAETPEGQKIGIVK 545

Query: 531  NLALMVYITVG---SAAYPILEFLEEWGTENFE------EISPAVIPQATKIFVNGCWVG 581
            NL+LM  ++          +L+ +     + F+      +     IP+ TK+ V+G W+G
Sbjct: 546  NLSLMTAVSNDLQQKDKETLLKLIMVLKQDVFDFQLLQGDFQAQDIPKMTKVLVDGNWIG 605

Query: 582  IHRDPEMLVKTLRRLRRRVD--VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 639
              R+PE  ++  + LR   +  +  EV +  D   KE+RIYTD GRC RPLFIV+  +L 
Sbjct: 606  FTRNPEQFIQEFKNLRSAEESFIPIEVSINFDYVNKEIRIYTDAGRCMRPLFIVQDNKLK 665

Query: 640  IKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 699
            +KK  + +           W  L+    +E +D EEEE ++I+M +N + +   + +   
Sbjct: 666  LKKNQLNSFTD--------WEQLLQNKCVELLDVEEEEGSLIAMDLNIMTRGTQNFKR-- 715

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
               YTHCEIHP ++ GVCAS+IPF +HNQ PRNT QSAMGKQAMG+  TN+  R DTL +
Sbjct: 716  ---YTHCEIHPCMMFGVCASVIPFANHNQGPRNTLQSAMGKQAMGLNSTNFNIRFDTLVH 772

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            +L+YPQKPL +++A++ +   ++P GIN + +IAC++GYNQEDS+I+NQ +IDRGFFRS+
Sbjct: 773  ILHYPQKPLASSKAVDFITVNEVPIGINCVTSIACFTGYNQEDSIIINQYAIDRGFFRSV 832

Query: 820  FFRSYRD-EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            F+R+Y++ E+K      +    +P   N  G     + KLD DG+ PPGT+V  E+ IIG
Sbjct: 833  FYRTYKESEDKDPDNFTETKITKPLGDNYAGKL---FIKLDSDGIVPPGTKVDEEEPIIG 889

Query: 879  KTTPISQ---DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            K   I     + A GQ +    ++ S+  R +E G+VD VL++ N  G + VKV+VRS+R
Sbjct: 890  KELIIDNIMLNTANGQKNT---KECSLLTRRAERGVVDSVLISENQKGYKLVKVKVRSLR 946

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            IPQIGDKF SRHGQKGT GMTY QED+P+T+ GI+PD+ +NPH IPSRMTIG LIEC+  
Sbjct: 947  IPQIGDKFCSRHGQKGTCGMTYRQEDLPFTLVGISPDLTINPHCIPSRMTIGHLIECLSS 1006

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            K+A+  G+  DATPF  ++V++I+  LH+ G+Q  G E M N ++G      IF+GPTYY
Sbjct: 1007 KLASIKGQFNDATPFAQISVNDIANKLHEVGWQKWGNEVMTNPYSGNMFQIPIFVGPTYY 1066

Query: 1056 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLF 1115
            QRL+H+VDDK+++R RGPV  +TRQP  GRSR GGLRFGEMERDC+I+HG + FLKER +
Sbjct: 1067 QRLRHLVDDKMYARSRGPVTGITRQPTHGRSRKGGLRFGEMERDCIISHGTAKFLKERTY 1126

Query: 1116 DQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN---KTDIVQVHIPYACKLLFQELMAM 1172
            D SDA+RVHVC  CGL A+ANL+   F C  CKN   +  I QV +PYA K L QEL++M
Sbjct: 1127 DVSDAFRVHVCSKCGLFAVANLENQEFYCNICKNTNQQNQIYQVLMPYAAKTLIQELISM 1186

Query: 1173 AIAPRM 1178
             IAPR+
Sbjct: 1187 NIAPRL 1192


>gi|83415447|gb|ABC17931.1| RNA polymerase II second largest subunit precursor, partial
            [Coelomomyces stegomyiae]
          Length = 1080

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/691 (65%), Positives = 542/691 (78%), Gaps = 21/691 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFR  F+KLT+DV  Y   C++  +  NL  AI + TIT+GL+Y+LAT
Sbjct: 2    KRLDLAGPLLASLFRTFFQKLTKDVGRYFTNCLERSRPFNLNMAINSNTITNGLRYALAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q     TRAGVSQVLNR T+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGSA+ PI EFL EW TEN EEISP+ I   TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSIISVGSASEPIHEFLSEWTTENLEEISPSTIGPNTKVFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV-EK 635
            G W+GIHR+P+ LVKTL+ LRR  D+++EV VV DIR  ELRIYTD GR  RPLF+V E 
Sbjct: 182  GAWIGIHREPDSLVKTLKTLRRATDIDSEVSVVHDIRENELRIYTDPGRICRPLFVVNEN 241

Query: 636  QRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR--- 692
            Q+L++KK  I+ L + +     GW  L+  G +EY+DTEEEET MISM+ +DL +AR   
Sbjct: 242  QQLVLKKEHILKLSEEDEDAIWGWEKLLINGIVEYLDTEEEETVMISMSPDDLAEARGAL 301

Query: 693  ---------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
                                 Y  T+THCEIHP++ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 302  IFDKSLDRDRTARLKARKPGDYCKTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSA 361

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMG+Y+TN+Q RMDTLA +LYYPQKPLVTTR M++L FR+LPAG NAIVAIA YSG
Sbjct: 362  MGKQAMGVYLTNFQLRMDTLANILYYPQKPLVTTRNMQYLRFRELPAGQNAIVAIAAYSG 421

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDS+IM+QS+IDRG FRS+++RSY D EKK G    E+F RP R  T+ +R GSY+K
Sbjct: 422  YNQEDSLIMSQSAIDRGLFRSIYYRSYVDAEKKTGFTQLEEFERPTRETTLKLRQGSYEK 481

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRYTRRDHSISLRHSETGMVDQVL 916
            L+DDG   PGTRV+G+D+IIGKT P+  D ++ G  +  T++D S  L+ SE G+VD V+
Sbjct: 482  LEDDGFVAPGTRVNGDDIIIGKTAPLPMDHSELGTRTTQTKKDVSTGLKSSENGIVDHVM 541

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            +TTN DG +FVK+RVRS R+PQIGDKF+SRHGQKGTVGMTY QEDMP+T EG+TPD+I+N
Sbjct: 542  VTTNGDGYKFVKIRVRSTRVPQIGDKFASRHGQKGTVGMTYRQEDMPFTAEGLTPDLIIN 601

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1036
            PHAIPSRMTIG L+EC++GKV++  G EGDATPFTDVTV  IS  L +CGYQ RGFE MY
Sbjct: 602  PHAIPSRMTIGHLVECLLGKVSSLTGSEGDATPFTDVTVQQISDLLRECGYQQRGFEVMY 661

Query: 1037 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            NGHTG++L+A IFLGPTYYQRLKHMVDDKIH
Sbjct: 662  NGHTGKKLSAQIFLGPTYYQRLKHMVDDKIH 692



 Score = 54.3 bits (129), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/27 (85%), Positives = 25/27 (92%)

Query: 1067 HSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            +SR RGP+QILTRQP EGRSRDGGLRF
Sbjct: 1054 NSRSRGPLQILTRQPVEGRSRDGGLRF 1080


>gi|56694318|gb|AAW22899.1| RNA polymerase II second largest subunit [Macrozamia moorei]
          Length = 523

 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/522 (88%), Positives = 485/522 (92%), Gaps = 10/522 (1%)

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
            TENFEEIS AVIP ATKIFVNGCWVGIHRDP++LVKTLR+LRR+VDVNTEVGVVRDIRL 
Sbjct: 2    TENFEEISXAVIPNATKIFVNGCWVGIHRDPDLLVKTLRQLRRQVDVNTEVGVVRDIRLS 61

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRE-----SPEDG----GWHDLVAKG 666
            ELR+YTDYGRCSRPLFIVE QRLLIKK DI  LQQR+     SP+D     GWH+LV KG
Sbjct: 62   ELRLYTDYGRCSRPLFIVENQRLLIKKPDIRRLQQRDQLPPPSPDDENTVRGWHELVTKG 121

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT-YTHCEIHPSLILGVCASIIPFPD 725
            FIEY+DTEEEETTMISMTI+DLV AR  P  A +   YTHCEIHPSLILGVCASIIPFPD
Sbjct: 122  FIEYVDTEEEETTMISMTISDLVNARNSPPTAASIVKYTHCEIHPSLILGVCASIIPFPD 181

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG
Sbjct: 182  HNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 241

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
            INAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLF+RSYRDEEK+MGTLVKE+FGRP+R 
Sbjct: 242  INAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFYRSYRDEEKRMGTLVKEEFGRPNRE 301

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLR 905
            NT GMRHGSYDKLDDDGLAPPGTRVSGE VIIGKTTP++QDE+ GQA+RYT+RD S SLR
Sbjct: 302  NTTGMRHGSYDKLDDDGLAPPGTRVSGEXVIIGKTTPVTQDESGGQAARYTKRDQSTSLR 361

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
            HSE+GMVDQVLLTTNADGLRFVKVR+ SVRIPQIGDKFSSRHGQKGTVGMTY QEDMPWT
Sbjct: 362  HSESGMVDQVLLTTNADGLRFVKVRMXSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMPWT 421

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
            VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC
Sbjct: 422  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 481

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            GYQM GFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIH
Sbjct: 482  GYQMXGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH 523


>gi|55273989|gb|AAV48865.1| RNA polymerase II second largest subunit [Amanita brunnescens]
          Length = 694

 Score =  960 bits (2481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/695 (65%), Positives = 550/695 (79%), Gaps = 25/695 (3%)

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++
Sbjct: 1    FRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSK 60

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLV
Sbjct: 61   AGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLV 120

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVNG W+G+HRDP  L
Sbjct: 121  KNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSAVP-CTKVFVNGVWMGVHRDPANL 179

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 649
            VKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L ++K+ +  L 
Sbjct: 180  VKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHVRWLS 239

Query: 650  Q--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA--------- 698
                E  ED  W  LV  G +E +D +EEET MISMT  DL  +RL              
Sbjct: 240  NGFNEESEDFKWEHLVKGGIVELLDADEEETVMISMTPEDLENSRLQQSGVDPNVNDGEF 299

Query: 699  ----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
                       A  +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+T
Sbjct: 300  DPAARLKAGISAHAWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLT 359

Query: 749  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
            N+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQ
Sbjct: 360  NFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQ 419

Query: 809  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
            SSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT
Sbjct: 420  SSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGT 479

Query: 869  RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
             V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++G +F
Sbjct: 480  NVTGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKF 539

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
            VKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI
Sbjct: 540  VKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTI 599

Query: 987  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            G L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A
Sbjct: 600  GHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQA 659

Query: 1047 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
             I+LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 660  QIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 694


>gi|343482722|gb|AEM45106.1| RNA polymerase II second largest subunit [Archaeorhizomyces sp.
            FG15P2b]
          Length = 736

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/735 (63%), Positives = 556/735 (75%), Gaps = 39/735 (5%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL GLFRMLF+KLTRDV  Y+QKCV+  ++ NL  A+K+ TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLAGLFRMLFKKLTRDVYKYMQKCVETNREFNLTLAVKSNTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q      R GVSQVLNR T+ASTLSHLRR N+PIGREGK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGDQKKGLAARVGVSQVLNRYTFASTLSHLRRTNTPIGREGKVAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM Y++VGSA+ PI+E LEEWG EN E+ +P+  P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSYVSVGSASAPIIESLEEWGMENLEDYNPSATPNTTKVFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDPE LV T+R LRR++D++ EV VVRDIR KELR+YTD GR  RPLFIV+  
Sbjct: 182  GVWLGVHRDPEHLVSTVRSLRRKLDISAEVSVVRDIREKELRLYTDAGRVCRPLFIVDND 241

Query: 637  -------RLLIKKRDIIALQ-------QRESPEDGGWHDLVAKGFIEYIDTEEEETTMIS 682
                    L++ K  + AL         R   E   W+DLV+ G +EYID EEEET MI+
Sbjct: 242  PDSARYGELMLTKGHVDALNAGREKTDDRPDSERFRWNDLVSNGIVEYIDAEEEETIMIA 301

Query: 683  MTINDL-----VQARLHPEEAY----------------ADTYTHCEIHPSLILGVCASII 721
            MT  DL     VQ  +H E+ +                A  +TH EIHPS+ILG+CASII
Sbjct: 302  MTPEDLEMSRQVQRGVHVEQEFNADDPGQRIKPTVNPDAHQWTHXEIHPSMILGICASII 361

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT++ +LYYPQKPL TTR+ME L    
Sbjct: 362  PFPDHNQSPRNTYQSAMGKQAMGVFLTNYQVRMDTMSNILYYPQKPLATTRSMEFLQXXX 421

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
                             NQEDSVIMNQSSIDRG FRS+F+R Y D E+KMG  V E+F +
Sbjct: 422  XXXXXXXXXXXXXXXXXNQEDSVIMNQSSIDRGLFRSIFYRCYMDAEEKMGMQVMEEFEK 481

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRD 899
            P R +T+ ++HG+YDKL+DDGL  PGTRVSG+D+IIGKT PI  D E  GQ +++ T+RD
Sbjct: 482  PQRGSTLRLKHGTYDKLEDDGLIAPGTRVSGDDIIIGKTAPIPPDAEEMGQRTKFHTKRD 541

Query: 900  HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 959
             S  +R +E+G++DQV++TTN +GL+FVKVR+RS RIPQIGDKF+SRHGQKGT+G+TY  
Sbjct: 542  VSTPMRSTESGIIDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGITYRH 601

Query: 960  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT-DVTVDNI 1018
            EDMP+T EGI PDII+NPHAIPSRMT+  L+EC + KV+A  G EGDATPF   +TVD I
Sbjct: 602  EDMPFTSEGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGHEGDATPFNVAITVDAI 661

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
            SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRLKHMVDDKIH+R RGPVQILT
Sbjct: 662  SKLLREHGYQSRGFEIMYNGHTGRKLQAQVFLGPTYYQRLKHMVDDKIHARARGPVQILT 721

Query: 1079 RQPAEGRSRDGGLRF 1093
            RQP EGRSRDGGLRF
Sbjct: 722  RQPVEGRSRDGGLRF 736


>gi|55274001|gb|AAV48871.1| RNA polymerase II second largest subunit [Clitocybe subditopoda]
          Length = 693

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/694 (66%), Positives = 552/694 (79%), Gaps = 24/694 (3%)

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  ++
Sbjct: 1    FRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSK 60

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLV
Sbjct: 61   AGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLV 120

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  L
Sbjct: 121  KNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVNGVWMGVHRDPANL 179

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 649
            VKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L ++K+ I  L 
Sbjct: 180  VKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLN 239

Query: 650  Q--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL------HPEEAYAD 701
                +  E+  W  LV  G IE +D EEEET MISMT  DL  +RL      H  E   D
Sbjct: 240  NGYNDEGEEYKWEQLVKGGIIELLDAEEEETVMISMTPEDLENSRLNQSGAPHTHEPDFD 299

Query: 702  ------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 749
                        T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TN
Sbjct: 300  PAARLKPGLNSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTN 359

Query: 750  YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 809
            +  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS
Sbjct: 360  FLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 419

Query: 810  SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 869
            SIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+YDKL+DDGL  PGT 
Sbjct: 420  SIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPVRDNTLRMKHGTYDKLEDDGLIAPGTG 479

Query: 870  VSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFV 927
            V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VDQVL+TTN++G +FV
Sbjct: 480  VAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFV 539

Query: 928  KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 987
            KVRVRS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTIG
Sbjct: 540  KVRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIG 599

Query: 988  QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 1047
             L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A 
Sbjct: 600  HLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQ 659

Query: 1048 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
            ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 660  VYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 693


>gi|300394698|gb|ADK11887.1| DNA-directed RNA polymerase II subunit two, partial [Ceraceomyces
            borealis]
          Length = 693

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/694 (66%), Positives = 552/694 (79%), Gaps = 26/694 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            IVE Q+L+++K+ I  L Q    EDG    W  L+  G IE +D EEEET MISMT  DL
Sbjct: 240  IVENQQLVLQKKHIKWLNQGYRDEDGEEFKWEQLIKGGIIELLDAEEEETVMISMTPEDL 299

Query: 689  VQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQS 729
              +RL          +E +           A T+THCEIHPS+ILG+CASIIPFPDHNQS
Sbjct: 300  ENSRLQQSGTDPHANDEEFDPAARLKAGTNAHTWTHCEIHPSMILGICASIIPFPDHNQS 359

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360  PRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ 
Sbjct: 420  VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRENTLR 479

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 907
            M+HG+YDK++DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480  MKHGTYDKIEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540  ENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            GI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++SK L + GY
Sbjct: 600  GIVPDIIINPHAIPSRMTIGHLVECLLSKVATLLGNEGDATPFTDLTVESVSKFLLQKGY 659

Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 1061
            Q RG E MY+GHTGR+L A ++LGPTYYQRLKHM
Sbjct: 660  QSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHM 693


>gi|56694352|gb|AAW22916.1| RNA polymerase II second largest subunit [Juniperus communis]
          Length = 514

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/517 (87%), Positives = 481/517 (93%), Gaps = 3/517 (0%)

Query: 542  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
            S+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+TLR+LRR+VD
Sbjct: 1    SSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVRTLRQLRRQVD 60

Query: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 661
            VN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK D   LQ   +  + GWH+
Sbjct: 61   VNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIKKSDXNNLQ---ASREEGWHE 117

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
            L+ +G IEY+DTEEEETTMISMTI DLV AR++PE+AY+ TYTHCEIHPSLILGVCASII
Sbjct: 118  LITQGCIEYVDTEEEETTMISMTIXDLVNARINPEDAYSHTYTHCEIHPSLILGVCASII 177

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 178  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 237

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAGINAIV I+CYSG  QEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+ GTLVKE+FGR
Sbjct: 238  LPAGINAIVXISCYSGXXQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRAGTLVKEEFGR 297

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 901
            P+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD+  GQ S+YT+RD S
Sbjct: 298  PNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDTAGQVSKYTKRDQS 357

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
             SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 358  TSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 417

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD ISKA
Sbjct: 418  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDXISKA 477

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            LHKCGYQMRGFETMYNGHTGR+L+AMI LGPTYYQRL
Sbjct: 478  LHKCGYQMRGFETMYNGHTGRKLSAMIXLGPTYYQRL 514


>gi|156093703|ref|XP_001612890.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Plasmodium
           vivax Sal-1]
 gi|148801764|gb|EDL43163.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
           [Plasmodium vivax]
          Length = 1339

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/873 (52%), Positives = 625/873 (71%), Gaps = 21/873 (2%)

Query: 27  DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAET 86
           D+W VI ++F   GLV QQ++S+++FI+  MQEI+DE   IEIRP+ Q+    + D    
Sbjct: 35  DSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPQIEIRPQPQYR-SDRDDNKNV 93

Query: 87  IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR--VIKKGHDGE 144
           +Y + FGQ+ L +P   E +     L+P+ ARLRNLTYS+ +Y+D+ +   V+ +    +
Sbjct: 94  MYALKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIEQSTYVVDESTRSQ 153

Query: 145 EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 204
            + E   + ++ +G++P+ML+S +C      E ++ ++GEC +DQGGYFI+NG EKVL+A
Sbjct: 154 ILKEKFIYERINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFIVNGGEKVLVA 213

Query: 205 QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS----SG 260
           QE+M+ N +YVFKK+QP+K+ +VAE+RS  E +++  S   V+M ++T ++G      +G
Sbjct: 214 QERMAHNFIYVFKKKQPSKFGWVAEIRSQME-RSQATSAFSVKMKTKTGSRGSGGSARTG 272

Query: 261 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
             + ATLPYIRTEI + I+FRALG  +D+DIL+ I YDF D  M+  LR +LEE      
Sbjct: 273 GQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKMMINTLRETLEECIDYPT 332

Query: 321 QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
           Q + LD+IGKRG TVG +R+KRI YAKE+L+KE+LPH+GTG   E+KK+Y+ GY+I+RLL
Sbjct: 333 QDICLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTGPGVESKKSYFIGYMINRLL 392

Query: 381 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
           L  LGR  EDDRDH+G KRLD+AGPL+   F   FRK+ +DV+  +Q+ +DN K  ++  
Sbjct: 393 LAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVKRVLQRQIDNNKPFDVAG 452

Query: 441 AIKAKT-ITSGLKYSLATGNWGQ-ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
           A+++ + IT G++Y LATGNWG+  +    R GV+QVLNRLTY+S LSHLRRLN+P+GRE
Sbjct: 453 AVRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLGRE 512

Query: 499 GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
           GK+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+LM  I+VG++   I EFL EWG E+
Sbjct: 513 GKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIFEFLLEWGLES 572

Query: 559 FEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELR 618
            +E+ P ++ +  K+F+NG WVG     + L++TL  LRRR D++ E  +VRD+  KE++
Sbjct: 573 LDEVPPQLMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCDISPEASIVRDVNSKEIK 632

Query: 619 IYTDYGRCSRPLFIVE----KQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTE 674
           I+TD GR  RPL++V+    + +L + K  +  +     PE   W  L+ +G IEYID E
Sbjct: 633 IFTDSGRAMRPLYVVKNVKGENKLKLTKEHVKNMMAY--PETYNWDYLIQEGIIEYIDCE 690

Query: 675 EEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
           EEETTMISM I+DL          Y + YTHCEIHPSLILGVCASIIPF DHNQSPRNTY
Sbjct: 691 EEETTMISMFIDDLKTG-----TGYHNNYTHCEIHPSLILGVCASIIPFSDHNQSPRNTY 745

Query: 735 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
           QSAMGKQAMGIYVTN+  R+DTLA++LYYPQ+PLV T+ ME+L FR LPAGINAIVAI C
Sbjct: 746 QSAMGKQAMGIYVTNFNIRLDTLAHLLYYPQRPLVCTKVMEYLRFRDLPAGINAIVAIMC 805

Query: 795 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
           Y+GYNQEDS+IMNQSSIDRG FRS+F+R+Y  EEK+ G+L+ E F +P       ++ G 
Sbjct: 806 YTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKPSIRCVKNLKRGD 865

Query: 855 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
           Y KLD+DGL  PG RV G+D+IIGK +P  +DE
Sbjct: 866 YTKLDNDGLIAPGIRVLGDDIIIGKVSPNIEDE 898



 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 183/286 (63%), Positives = 240/286 (83%)

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            ++D S+SLR +E G++D V+L++N+ G +F KV+VRSVR+PQIGDKF+SRHGQKGT+G+T
Sbjct: 1053 KKDCSLSLRENENGVIDTVMLSSNSRGNKFAKVKVRSVRVPQIGDKFASRHGQKGTIGIT 1112

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y  EDMP++ +G  PDII+NPHA+PSRMTIG L+EC+ GKVAA  G EGDATPF+ +TV 
Sbjct: 1113 YRTEDMPFSSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSRITVQ 1172

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
             IS+ LH  GY+  G + +YNGH G+ L + IF+GPTYYQRLKHMV+DKIH+R RGP+ +
Sbjct: 1173 EISQRLHSLGYEKYGNDVLYNGHNGKMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTM 1232

Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
            +TRQP EGRSRDGGLRFGEMERDCMI+HG++  LKERLF++SDAYRVHVC++CGL  IA+
Sbjct: 1233 ITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLCCIAD 1292

Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
            + KN++EC  C +KT+I Q++IPYACKLLFQELM MAI P+++ ++
Sbjct: 1293 INKNAYECTVCNSKTNISQIYIPYACKLLFQELMTMAIYPKLVLED 1338


>gi|258562132|gb|ACV81788.1| RNA polymerase II second largest subunit [Agaricus bisporus]
          Length = 697

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/696 (66%), Positives = 549/696 (78%), Gaps = 25/696 (3%)

Query: 410  LFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 468
            LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNWG Q  +  +
Sbjct: 3    LFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSS 62

Query: 469  RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 528
            +AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGL
Sbjct: 63   KAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGL 122

Query: 529  VKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEM 588
            VKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  
Sbjct: 123  VKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTSP-CTKVFVNGVWMGVHRDPAN 181

Query: 589  LVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIAL 648
            LVKT+++LRR+ D++ EV VVRDIR KELRIYTD GR  RPLFIVE Q+LL+ KR I  L
Sbjct: 182  LVKTIKKLRRKDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWL 241

Query: 649  QQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEA- 698
                  E     W  L+  G IE +D EEEET MISMT  DL  +RL       H  +  
Sbjct: 242  NSGSDDEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGD 301

Query: 699  -----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 747
                       +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAM KQAMGIY+
Sbjct: 302  FDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMAKQAMGIYL 361

Query: 748  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 807
            TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMN
Sbjct: 362  TNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMN 421

Query: 808  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 867
            QSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PG
Sbjct: 422  QSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPG 481

Query: 868  TRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLR 925
            T V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQVL+TTN++G +
Sbjct: 482  TGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQK 541

Query: 926  FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 985
            FVKVRVR+ RIPQIGDKF+SRHGQKGTVG+TY QEDMP+T EGI PD+I+NPHAIPSRMT
Sbjct: 542  FVKVRVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMT 601

Query: 986  IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 1045
            IG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L 
Sbjct: 602  IGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQ 661

Query: 1046 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
            A I+LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 662  AQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 697


>gi|99866478|gb|ABF67584.1| RNA polymerase II second largest subunit, partial [Auricularia
            auricula-judae]
          Length = 690

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/692 (65%), Positives = 550/692 (79%), Gaps = 27/692 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  KD NL  A+KA TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLASLFRMLFRKLTKDVYRYLQKCVEARKDFNLNLAVKANTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +   +AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKSMSAKAGVSQVLNRYTFASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP +TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEENAHSGIP-STKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIALQQRESPEDGG---WHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
             Q+L+IKK  +  +Q +E  E G    W +L+  G IE +D EEEET MI MT +DL  +
Sbjct: 240  DQQLVIKKHHVEWIQNKED-EHGASFKWDNLIKTGLIELLDAEEEETVMICMTSDDLENS 298

Query: 692  RLH-----PEEA--------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
            RL      P +A               A T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 299  RLQSRGMAPRDADNEFDPAARLKSIVNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 358

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMGIY+TN+Q R DT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 359  TYQSAMGKQAMGIYLTNFQVRQDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 418

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
             CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G +  E+F +P R  T+ M+H
Sbjct: 419  LCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDVEKKSGMVALEEFEKPSRDTTLRMKH 478

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 910
            G+YDKL+DDGL  PGT V+GED+IIGKT P+ QD E  GQ +R + +RD S  L+ +E G
Sbjct: 479  GTYDKLEDDGLIAPGTGVAGEDIIIGKTAPLPQDSEELGQRTRTHQKRDVSTPLKSTENG 538

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQVL+TTN DG +FVK+R+RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGIT
Sbjct: 539  IVDQVLITTNQDGQKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIT 598

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDI++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L   GY  R
Sbjct: 599  PDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQVLRSSGYHSR 658

Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            G E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 659  GLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 690


>gi|82914537|ref|XP_728803.1| DNA-directed RNA polymerase subunit beta [Plasmodium yoelii yoelii
           17XNL]
 gi|23485337|gb|EAA20368.1| DNA-directed RNA polymerase, beta subunit [Plasmodium yoelii
           yoelii]
          Length = 1312

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/885 (51%), Positives = 633/885 (71%), Gaps = 22/885 (2%)

Query: 16  EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
           ++D+E++IT+ED+W VI ++F   GLV QQ++S+++FI+  MQEI+DE  +IEI+P+ Q+
Sbjct: 26  DKDDEDQITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNIEIKPQPQY 85

Query: 76  NPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR 135
            P +  +    IY + FGQ+ L +P   E +     L+P+ ARLRNLTYS+ +Y+D+ + 
Sbjct: 86  RPDKDEN-NNIIYSLKFGQLSLDRPFFDEKNLINKNLWPQEARLRNLTYSSAIYIDIEQS 144

Query: 136 --VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF 193
             ++ +    + + E   + ++ +G++P+ML+S +C      + D++++GEC  DQGGYF
Sbjct: 145 TYIVDENTKKQILKEKFVYERINLGRIPLMLKSMFCWTKGLPDNDISDMGECSLDQGGYF 204

Query: 194 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS 253
           I+NG EKVL+AQE+M+ N +YVFKK+  +K+ ++AE+RS  E +++  S   V+M +++ 
Sbjct: 205 IVNGGEKVLVAQERMANNFIYVFKKKHSSKFGWIAEIRSQME-KSQATSAFSVKMKTKSG 263

Query: 254 AKGGSSGQ-----YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
           ++G           + ATLPYIRTEI + I+FRALG  +D+DIL+ I YD  D  M+ +L
Sbjct: 264 SRGSGGSGKSSGGLLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDLNDKMMINIL 323

Query: 309 RPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKK 368
           + +LEE      Q + LDYIGKRG TVG +RDKRI YAKE+L+KE+LPH+GTG   E++K
Sbjct: 324 KETLEECIDYPTQDICLDYIGKRGPTVGASRDKRILYAKELLRKEVLPHMGTGPGVESRK 383

Query: 369 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 428
           +Y+ GY+I+RLLL  LGR  EDDRDH+G KRLD+AGPL+   F   FRK+ +DV+  +Q+
Sbjct: 384 SYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFATYFRKMAKDVKRVLQR 443

Query: 429 CVDNGKDVNLQFAIKAKT-ITSGLKYSLATGNWGQ-ANAAGTRAGVSQVLNRLTYASTLS 486
            +DN K  ++  AI++ + IT G++Y LATGNWG+  +    R GV+QVLNRLTY+S LS
Sbjct: 444 QIDNNKPFDVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLS 503

Query: 487 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 546
           HLRRLN+P+GREGK+AKPRQLHN+ WGM+CP ETPEGQ+ GLVKNL+LM  I+VG++   
Sbjct: 504 HLRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNN 563

Query: 547 ILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEV 606
           I EFL EWG E+ +E+ P ++ +  K+F+NG WVG     + L++TL  LRRR D++ E 
Sbjct: 564 IYEFLTEWGLESLDEVPPQLMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCDISPEA 623

Query: 607 GVVRDIRLKELRIYTDYGRCSRPLFIVE----KQRLLIKKRDIIALQQRESPEDGGWHDL 662
            +VRD+  KE++I+TD GR  RPL++V+    K +L + K  I      + P+   W   
Sbjct: 624 SIVRDVNSKEIKIFTDSGRAMRPLYVVKNVGGKNKLKLTKEHI--KNATKYPDKYNWDYF 681

Query: 663 VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
           + +G IEYID EEEETTMISM I+DL          Y + YTHCEIHPSLILGVCASIIP
Sbjct: 682 IQEGIIEYIDCEEEETTMISMFIDDLKTG-----TGYYNNYTHCEIHPSLILGVCASIIP 736

Query: 723 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
           F DHNQSPRNTYQSAM KQAMGIYVTN+  R+DTLA++LYYPQKPLV T+A E+LHF+ L
Sbjct: 737 FSDHNQSPRNTYQSAMSKQAMGIYVTNFNIRLDTLAHLLYYPQKPLVCTKATEYLHFKDL 796

Query: 783 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
           PAGINAIVAI CY+GYNQEDS+IMNQSSIDRG FRS+F+R+Y  EEK+ G+L+ E F +P
Sbjct: 797 PAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKP 856

Query: 843 DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
                 G++ G Y KL+DDGL  PG RV G+D+IIGK +P   DE
Sbjct: 857 SIRVVKGLKRGDYTKLEDDGLIAPGIRVLGDDIIIGKVSPSIDDE 901



 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 184/292 (63%), Positives = 243/292 (83%)

Query: 891  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
             A +  ++D S+S+R +E G++D V+L++N+ G +F KV+VRSVRIPQIGDKF+SRHGQK
Sbjct: 1020 NAMKQYKKDCSLSIRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQK 1079

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GT+G+TY  EDMP+T +G  PDII+NPHA+PSRMTIG L+EC+ GKVAA  G EGDATPF
Sbjct: 1080 GTIGITYRMEDMPFTSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPF 1139

Query: 1011 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 1070
            + +TV  IS+ LH+ GY+  G + +YNGH G+ LT+ IF+GPT+YQRLKHMV+DKIH+R 
Sbjct: 1140 SKITVQEISERLHRLGYEKYGNDILYNGHNGKMLTSKIFIGPTFYQRLKHMVEDKIHARS 1199

Query: 1071 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 1130
            RGP+ ++TRQP EGRSRDGGLRFGEMERDCMI+HG++  LKERLF++SDAYRVHVC+ CG
Sbjct: 1200 RGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDICG 1259

Query: 1131 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
            L  +A++ KN++EC  C +KT+I Q++IPYACKLLFQELM MAI P+++ ++
Sbjct: 1260 LCCVADINKNAYECTICNSKTNISQIYIPYACKLLFQELMTMAIYPKLVLED 1311


>gi|40643905|emb|CAD89691.1| RNA polymerase II, second largest subunit [Escallonia sp. Oxelman
            2340]
          Length = 508

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/468 (96%), Positives = 462/468 (98%)

Query: 600  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
            VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV KQRLLIKK DI ALQQRE+PEDGGW
Sbjct: 19   VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVNKQRLLIKKADIQALQQRETPEDGGW 78

Query: 660  HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
            HDLVAKG+IEYIDTEEEETTMISMTINDLV ARL+PEEAY++TYTHCEIHPSLILGVCAS
Sbjct: 79   HDLVAKGYIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCAS 138

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMGIYVTN+QFRMDTLAYVLYYPQKPLVTTRAMEHLHF
Sbjct: 139  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 198

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            RQLPAGINAIVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGTLVKEDF
Sbjct: 199  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGTLVKEDF 258

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRD 899
            GRPDR+NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD+AQGQASRY++RD
Sbjct: 259  GRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDAQGQASRYSKRD 318

Query: 900  HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 959
            HS SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ
Sbjct: 319  HSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 378

Query: 960  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 1019
            EDMPWT EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS
Sbjct: 379  EDMPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 438

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH
Sbjct: 439  KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 486


>gi|94410936|gb|ABF18586.1| RNA polymerase II second largest subunit, partial [Camarophyllopsis
            hymenocephala]
          Length = 696

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/699 (65%), Positives = 553/699 (79%), Gaps = 29/699 (4%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+
Sbjct: 1    DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P
Sbjct: 121  NTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
              TK+FVNG W+G+HRDP  LVK +++LRR+ D++ EV VVRDIR +ELR+YTD GR  R
Sbjct: 181  -CTKVFVNGVWMGVHRDPANLVKXIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCR 239

Query: 629  PLFIVEKQRLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMT 684
            PLFIVE Q+L ++K+ I  L Q    +DGG    W  L+  G IE +D EEEET MISMT
Sbjct: 240  PLFIVENQQLALQKKHIRWLNQ--GYDDGGEEYKWEQLIKGGIIELLDAEEEETVMISMT 297

Query: 685  INDLVQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPD 725
              DL  +RL       H  +   D            T+THCEIHPS+ILG+CASIIPFPD
Sbjct: 298  PEDLENSRLQSSGVDPHANDGEFDPAARLKVGIDAHTWTHCEIHPSMILGICASIIPFPD 357

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG
Sbjct: 358  HNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAG 417

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
             NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R 
Sbjct: 418  QNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRD 477

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSIS 903
             T+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  
Sbjct: 478  TTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTP 537

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
            L+ +E+G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP
Sbjct: 538  LKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMP 597

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023
            +T EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S  L 
Sbjct: 598  FTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVESVSTFLR 657

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 658  QKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 696


>gi|340500807|gb|EGR27654.1| RNA polymerase ii second largest subunit, putative [Ichthyophthirius
            multifiliis]
          Length = 1194

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/1208 (42%), Positives = 753/1208 (62%), Gaps = 66/1208 (5%)

Query: 20   EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
            ++ I  +D W +I +YF+E  L  QQ++S+D FIQ+  Q  + E   I I+P+++++  Q
Sbjct: 8    KDNIDYQDCWNIIDSYFQENNLCTQQINSYDNFIQSIPQ--IMEEQKIRIKPQNKYSLKQ 65

Query: 80   QS--DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 137
             +  DF  T Y +SF      KP    S  +   +FP  AR+ +L YS  L + +  +++
Sbjct: 66   NNELDFENTQYIVSF-----EKPQKAPSYNQR--IFPTQARISDLDYS--LEIKIPIKLV 116

Query: 138  KKGHDGE----EVTETQDFTK--VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
            K+  + E    +V    D  K  + +  +P M++S  C+L+  S +   + GEC +DQGG
Sbjct: 117  KETFNPETGKLDVKNLVDPNKNVITLAHIPAMVQSKQCSLHGLSLQQRIQTGECKHDQGG 176

Query: 192  YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR 251
            YFII G EKV+IAQE+M+ N +YVFK+   ++  ++AE+RS+        S   ++M   
Sbjct: 177  YFIIKGQEKVIIAQERMAYNFIYVFKQND-DRIPWIAEIRSICGKITGIQSKFIIKM--- 232

Query: 252  TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF---QDTQMMELL 308
               K      + R+   YI  +IP+ I+F+AL  + D+ I+E+I +D    ++   MELL
Sbjct: 233  -KKKNEEIQLFWRSK--YISDDIPMFILFKALNIIKDRQIMEYIFHDIKSRENQTQMELL 289

Query: 309  RPSLEEAFVIQNQQVALDYIGKR--GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
            R SL     +++   AL+YIG R   ++  + +   +K AK IL   +LPH+G  +    
Sbjct: 290  RDSLLLCSKVKSVNSALNYIGLRVLASSKNIGKQDAVKAAKNILNYYLLPHIGQDEKSLH 349

Query: 367  KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
            +KA++ GY+I +LL  A  +  EDDRDHYG KR+D++G LL  LF+    +  +  +  +
Sbjct: 350  QKAFFVGYMIKKLLNAANNKCIEDDRDHYGKKRMDISGNLLSQLFKERVSQFIKRGKMML 409

Query: 427  Q-KCVDNGKDVNLQFAIKA-----KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRL 479
            Q K     +D N  F++K      K I+  LK ++ATGNWG  A+    R GVSQ L R 
Sbjct: 410  QEKFSKIFRDSNACFSLKNDIFDHKIISDALKAAIATGNWGVTADGEVARTGVSQQLKRD 469

Query: 480  T-YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
            T + +TLS++RR+ +P  +  K  KPRQLHNS +GM+CPAETPEGQ  G++KN+A M  +
Sbjct: 470  TCFFATLSNMRRVTAPQRQISKQTKPRQLHNSHYGMICPAETPEGQNIGMIKNMAFMTQV 529

Query: 539  TVG---SAAYPILEFLEEWGTENFE--EISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 593
            ++G        ILEFLE    + F+  +I+   I    K+F NG W G  +DPE L++  
Sbjct: 530  SLGLQERDNLQILEFLES-AVQVFDITQINVEEIAGMNKVFFNGNWFGFCKDPEDLIELF 588

Query: 594  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR---LLIKKRDIIALQQ 650
            ++ RR+     ++ VVRD+  KE+RIYTD GRC RPLF+VE  R   L I K ++  + +
Sbjct: 589  KKYRRKKQEFKDISVVRDVINKEIRIYTDSGRCMRPLFVVENARNRKLFINKENLKLINK 648

Query: 651  RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHP 710
              + ++  + +    GFIEY+D EEEE +MI + IND       P+      +THCEIHP
Sbjct: 649  --NVQEKRFSNYCLNGFIEYLDVEEEEISMIGIDINDFY---FPPKSRQNLPFTHCEIHP 703

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILGVCASIIPF  HNQ PRNT QSAMGKQ++G+  TN+ FR D+LA+VLYYPQ PL  
Sbjct: 704  SMILGVCASIIPFCHHNQGPRNTLQSAMGKQSIGLNATNFFFRYDSLAHVLYYPQVPLTF 763

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK- 829
            +R+  +    ++P GINAIVAIAC++G+NQEDS+I+NQS+IDRG FRS F+R+Y+  ++ 
Sbjct: 764  SRSNYYNSSVEMPFGINAIVAIACFTGFNQEDSLIVNQSAIDRGLFRSSFYRTYKTAQRN 823

Query: 830  -KMGTL-VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
             +MG   ++E    PD   T   +H S+ KLD DG+ PPGT+V  +DV++GK   I + E
Sbjct: 824  EEMGKQPIRETICIPDYKKTFIQQHSSFLKLDYDGIIPPGTQVISQDVLVGKVVQIIEKE 883

Query: 888  AQG----QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
             Q     +  +   +D S+  + SE G VD V+LT + DG   VKV++R  RIPQ+GDKF
Sbjct: 884  GQDIDKIEQLQKEYKDISLVSKRSEIGYVDNVILTEDKDGFYLVKVKIRCSRIPQVGDKF 943

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            +SRHGQKGTVGMT   EDMP+ +EGI  ++I+NPH IPSRMTIG +IE +  K+A   G 
Sbjct: 944  ASRHGQKGTVGMTIRGEDMPFNIEGIQAELIINPHCIPSRMTIGHMIEGLHSKLACLKGG 1003

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
             GDATPF +   +  +K L + GYQ  G E +Y+ +TG ++   I+  PTYYQRL+H+V+
Sbjct: 1004 FGDATPFQEGNFEKTAKELQEKGYQKYGNEILYDPYTGNKINTPIYFSPTYYQRLRHLVE 1063

Query: 1064 DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRV 1123
            DK+++R RGPV  +TRQP  GR + GGLRFGEMERDC+I+HG S FL+ER F  SD+YRV
Sbjct: 1064 DKMYARSRGPVVAITRQPTHGRGKGGGLRFGEMERDCIISHGTSKFLQERTFSVSDSYRV 1123

Query: 1124 HVCEHCGLIAIANLKKNSFECRGC------KNKTDIVQVHIPYACKLLFQELMAMAIAPR 1177
            H+C  CGLIA+A+L+   + C+ C      K+K  IVQ+ +PYA K + QEL++M I PR
Sbjct: 1124 HICSECGLIAVADLENEYYVCKRCLDLDKKKDKAKIVQIMMPYAAKQMIQELISMHIVPR 1183

Query: 1178 MLTKEDTK 1185
            +  ++  K
Sbjct: 1184 IRVQKSQK 1191


>gi|300394754|gb|ADK11915.1| DNA-directed RNA polymerase II subunit two, partial [Suillus
            bresadolae]
          Length = 694

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/695 (66%), Positives = 549/695 (78%), Gaps = 26/695 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL GLFRMLF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLAGLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  A  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            IVE Q+L ++K+ +  L Q    +DG    W  LV  G IE +D EEEET MI MT  DL
Sbjct: 240  IVENQQLALQKKHVKWLNQGYREDDGEEFKWEQLVKNGIIELLDAEEEETVMICMTPEDL 299

Query: 689  VQARLH-----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 729
              +RL      P +   D              T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 300  ENSRLQSAGIDPHQNDGDYDPAARLKAGINSHTWTHCEIHPSMILGVCASIIPFPDHNQS 359

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360  PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ 
Sbjct: 420  VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLR 479

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 907
            M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480  MKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540  ENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            GI PDI++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600  GIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            Q RG E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660  QSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 694


>gi|83415481|gb|ABC17948.1| RNA polymerase II second largest subunit, partial [Coemansia reversa]
          Length = 722

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/721 (62%), Positives = 556/721 (77%), Gaps = 25/721 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KR+DL GPLL  LFR LFR+LT+D+  Y+QKC+++ +D N+  A+K+  ITSGL+Y+LAT
Sbjct: 2    KRMDLGGPLLAMLFRTLFRRLTKDIGMYLQKCIESNRDFNMTLAVKSNIITSGLRYALAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A   RAGVSQVLNR T+ASTLSH+RR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGEQKKAMQARAGVSQVLNRYTFASTLSHMRRCNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM ++TVG  + PI EFL EW  EN  E+    I  ATK+F+N
Sbjct: 122  PAETPEGQACGLVKNLALMAHVTVGVDSSPIREFLNEWSMENLAEVQAKSIANATKVFLN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVGIHR P+ LV+ +   RR+ D+  E  +VRDIR +ELRI+TD GR  RPL IV+  
Sbjct: 182  GDWVGIHRKPDELVECMLDARRKADITFETSIVRDIRERELRIHTDSGRVCRPLLIVDSS 241

Query: 637  -RLLIKKRDIIALQQRESPEDGG--WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR- 692
             RL +KK  I A+++ +  ED    W DL+A G IEY+D EEEE  MI MT  +L ++  
Sbjct: 242  LRLRLKKAHIDAIERYDVAEDDAYKWADLLADGVIEYLDAEEEELAMICMTPQELAESHA 301

Query: 693  ------LHPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
                  L P E             Y +T+THCEIHPS+ILG+CASI+PFPDHNQSPRNTY
Sbjct: 302  YRTTGALPPVETDQASRVRSQRNIYINTWTHCEIHPSMILGICASIVPFPDHNQSPRNTY 361

Query: 735  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
            QSAMGKQAMGI +TNYQ RMDTLA VLYYPQKPL TTRAM++L FR LPAG NAIVAI C
Sbjct: 362  QSAMGKQAMGIMLTNYQLRMDTLANVLYYPQKPLATTRAMDYLKFRDLPAGQNAIVAIMC 421

Query: 795  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
            Y GYNQEDSVIMNQSSI+RG FRSL+FR+Y DEE K+G+     F +P    T+ ++HG+
Sbjct: 422  YGGYNQEDSVIMNQSSIERGLFRSLYFRTYHDEEDKLGSKELGTFEKPTPDTTLRLKHGT 481

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YTRRDHSISLRHSETGMV 912
            Y+KL+ DGL  PGTRV+G+D+IIGKTT I  D  + GQ ++ +++ D S +LR +E G+V
Sbjct: 482  YEKLEGDGLIAPGTRVTGDDIIIGKTTAIPPDSLELGQRTKSHSKIDASKALRSTECGIV 541

Query: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            DQV++TTN DG +FVKVR+RS R+PQ+GDKF+SRHGQKGT+G+TY  EDMP++ EGI PD
Sbjct: 542  DQVMMTTNGDGFKFVKVRIRSTRVPQMGDKFASRHGQKGTIGITYRTEDMPFSAEGIVPD 601

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032
            II+NPHAIPSRMT+G L+EC++ K++  M  EGDATPFTDVTV+ IS+ L   GYQ RGF
Sbjct: 602  IIINPHAIPSRMTVGHLVECLLSKLSTLMASEGDATPFTDVTVEAISRELLGHGYQPRGF 661

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
            E MYNGHTGR+L A +FLGPTYYQRLKHMVDDKIHSR RGP+QILTRQP EGR+RDGGLR
Sbjct: 662  EVMYNGHTGRKLAAQVFLGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRARDGGLR 721

Query: 1093 F 1093
            F
Sbjct: 722  F 722


>gi|56694336|gb|AAW22908.1| RNA polymerase II second largest subunit [Dacrydium cupressinum]
          Length = 498

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/500 (90%), Positives = 477/500 (95%), Gaps = 3/500 (0%)

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
            TENFEEISPAVIP ATKIFVNGCWVGIHRDPE+LV+TLR+LRR+VDVN EVGVVRDIRL+
Sbjct: 2    TENFEEISPAVIPTATKIFVNGCWVGIHRDPELLVRTLRQLRRQVDVNPEVGVVRDIRLR 61

Query: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
            ELR+YTDYGRCSRPLF+V+KQRL+IKKRDI  L Q  +PEDG WHDL+ KGFIEY+DT E
Sbjct: 62   ELRLYTDYGRCSRPLFVVKKQRLIIKKRDINELWQ--NPEDG-WHDLITKGFIEYVDTXE 118

Query: 676  EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
            EETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 119  EETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 178

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY
Sbjct: 179  SAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 238

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+FGRP+R NT GMRHGSY
Sbjct: 239  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGRPNRENTTGMRHGSY 298

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQV 915
            DKLDDDGLAPPGTRVSGEDVIIGKTTP+SQ+E+  Q S+YTRRD S SLRHSE+GMVDQV
Sbjct: 299  DKLDDDGLAPPGTRVSGEDVIIGKTTPVSQEESGNQISKYTRRDQSTSLRHSESGMVDQV 358

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            LLTTN DGLRFVKVR+RSVR+PQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV
Sbjct: 359  LLTTNQDGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 418

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035
            NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+ISKALHKCGYQMRGFETM
Sbjct: 419  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKALHKCGYQMRGFETM 478

Query: 1036 YNGHTGRRLTAMIFLGPTYY 1055
            YNGHTGR+L AMIFLGPTYY
Sbjct: 479  YNGHTGRKLNAMIFLGPTYY 498


>gi|55273997|gb|AAV48869.1| RNA polymerase II second largest subunit [Clavaria zollingeri]
          Length = 694

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/695 (65%), Positives = 553/695 (79%), Gaps = 25/695 (3%)

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FRMLFRKLT+DV  Y+QKCV+  K+ N+  A+K +TIT+GLKYSLATGNWG Q  +  ++
Sbjct: 1    FRMLFRKLTKDVYRYLQKCVETHKEFNIALAVKHQTITNGLKYSLATGNWGDQKKSMSSK 60

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLV
Sbjct: 61   AGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLV 120

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNLALM  I+VGS++ P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  L
Sbjct: 121  KNLALMACISVGSSSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVNGVWMGVHRDPAHL 179

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 649
            V+T+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q+L ++K+ I  L 
Sbjct: 180  VRTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLN 239

Query: 650  Q--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL-------HPEEAYA 700
            Q   ++ E+  W  LV  G IE +D EEEET MISMT  DL  +RL       H  +   
Sbjct: 240  QGYDDTGEEFRWEQLVKGGIIELLDAEEEETVMISMTPEDLENSRLQSTGVDPHANDGEF 299

Query: 701  D------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
            D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+T
Sbjct: 300  DPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLT 359

Query: 749  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
            N+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQ
Sbjct: 360  NFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQ 419

Query: 809  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
            SSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+ DGL  PGT
Sbjct: 420  SSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRETTLRMKHGNYDKLESDGLIAPGT 479

Query: 869  RVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
             V G+D+IIGKT PI  D E  GQ +R +T+RD S  L+ +E+G++DQVL+TTN++G +F
Sbjct: 480  GVRGDDIIIGKTAPIPPDSEELGQRTRSHTKRDVSTPLKSTESGVIDQVLITTNSEGQKF 539

Query: 927  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
            VKVR+RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMTI
Sbjct: 540  VKVRLRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTI 599

Query: 987  GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
            G L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L A
Sbjct: 600  GHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQA 659

Query: 1047 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
             ++LGPTYYQRLKHMVDDKIHSR RGPVQILTRQP
Sbjct: 660  QVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 694


>gi|40643888|emb|CAD88887.1| DNA-directed RNA polymerase subunit B [Fagonia lahovarii]
          Length = 484

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/484 (94%), Positives = 473/484 (97%)

Query: 609  VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFI 668
            VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI+ALQQRESPEDGGWHDLVAKGFI
Sbjct: 1    VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIVALQQRESPEDGGWHDLVAKGFI 60

Query: 669  EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            EYIDTEEEETTMISMTINDL+QAR +PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 61   EYIDTEEEETTMISMTINDLIQARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 120

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV TRAMEHLHFRQLPAGINA
Sbjct: 121  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVXTRAMEHLHFRQLPAGINA 180

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
             VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTM
Sbjct: 181  XVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTM 240

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE 908
            GMRHGSY+KLD DGLAPPGTRVSGEDVIIGKTTPIS + AQG A+R TRRDHSISLRHSE
Sbjct: 241  GMRHGSYEKLDGDGLAPPGTRVSGEDVIIGKTTPISXEXAQGAAARXTRRDHSISLRHSE 300

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
            TG+VDQVLLTTNADGLR VKVRV SVRIPQIGDKFSSRHGQKGT+GMTYTQEDMPWT+EG
Sbjct: 301  TGIVDQVLLTTNADGLRXVKVRVXSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWTMEG 360

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            ITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGD TPFTDVTVDNISKALHKCGYQ
Sbjct: 361  ITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDXTPFTDVTVDNISKALHKCGYQ 420

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
            MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 421  MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 480

Query: 1089 GGLR 1092
            GGLR
Sbjct: 481  GGLR 484


>gi|410610273|gb|AFV74905.1| RNA polymerase II second largest subunit, partial [Santalum album]
          Length = 486

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/486 (95%), Positives = 479/486 (98%)

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHRDP+MLV+TLRRLRRRVDVNTEVGVVRDIRL+ELRIYTDYGRCSRPLFIVEKQRL
Sbjct: 1    WVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLRELRIYTDYGRCSRPLFIVEKQRL 60

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIKK+DI ALQQRE+ E+GGWHDLVAKGFIEYIDTEEEETTMISMTINDLV ARL+PEEA
Sbjct: 61   LIKKKDIQALQQRETAEEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEA 120

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y++ YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA
Sbjct: 121  YSEMYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 180

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 181  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 240

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            LFFRSYRDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 241  LFFRSYRDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 300

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KT+PI+QDE+QGQASRYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQ
Sbjct: 301  KTSPIAQDESQGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQ 360

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKFSSRHGQKGTVGMTYT EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA
Sbjct: 361  IGDKFSSRHGQKGTVGMTYTXEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 420

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL
Sbjct: 421  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 480

Query: 1059 KHMVDD 1064
            KHMVDD
Sbjct: 481  KHMVDD 486


>gi|83415479|gb|ABC17947.1| RNA polymerase II second largest subunit, partial [Zancudomyces
            culisetae]
          Length = 718

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/717 (62%), Positives = 556/717 (77%), Gaps = 21/717 (2%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFR LF+K+TRD+  Y+QKC+++ ++ NL  A+K+ TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLAMLFRNLFKKMTRDMTRYLQKCIESRREFNLSMALKSNTITAGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A  +R GV+QVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGDQKKAMQSRTGVAQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM +ITVGS +  IL FLEEW  EN EE+    +  +TKIFVN
Sbjct: 122  PAETPEGQACGLVKNLALMAHITVGSDSGSILMFLEEWAMENLEELVGDSLADSTKIFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVGIH++   L  TL++LRRR++ + E+ +V D+R +E+RI TD GR  RPLF+V   
Sbjct: 182  GVWVGIHKEAVRLAATLKQLRRRLEFSYELSIVHDVREREIRILTDAGRVCRPLFVVNHM 241

Query: 637  RLLIKKRDIIALQQRESPEDGG--WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-- 692
            RL + K  + A++ R   E     WHDL+++G +EY+D EEEET MI M+ ++L ++R  
Sbjct: 242  RLALTKPVVAAIEARRLGERDAVRWHDLLSEGIVEYLDAEEEETAMIVMSPHELDESRRF 301

Query: 693  -----LHPEE---------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 738
                 L P++             T+THCEIHPS+ILG+CASI+PFPDHNQSPRNTYQSAM
Sbjct: 302  VHTGQLPPKDDGRIRSRRNIGITTWTHCEIHPSMILGICASIVPFPDHNQSPRNTYQSAM 361

Query: 739  GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 798
            GKQAMGI +TNYQ RMDTLA +LYYPQKPL TT AME++ F +LPAG NAIVAI CY+GY
Sbjct: 362  GKQAMGILLTNYQVRMDTLANLLYYPQKPLATTHAMEYIKFSELPAGQNAIVAILCYTGY 421

Query: 799  NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 858
            NQEDS+IMNQSSIDRG FRS+FFRSY DEE K+G      F +P R++T+ ++ G+Y+KL
Sbjct: 422  NQEDSLIMNQSSIDRGLFRSIFFRSYMDEEDKLGMRTMGRFEKPSRASTLRLKIGTYEKL 481

Query: 859  DDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASRYTRRDHSISLRHSETGMVDQVL 916
            DDDGL  PGTRV+G+D+IIGKTTPI  +  E   +   +T+ D S  LR +E+G+VDQVL
Sbjct: 482  DDDGLIAPGTRVTGDDIIIGKTTPIPIASLELGQRTLAHTKLDASKPLRATESGIVDQVL 541

Query: 917  LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
            L TN DG +FVKVRVRS R+PQIGDKF+SRHGQKGT+G+ YT EDMP+T +GI PD+I+N
Sbjct: 542  LXTNGDGFKFVKVRVRSTRVPQIGDKFASRHGQKGTIGIVYTSEDMPFTADGIVPDLIIN 601

Query: 977  PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1036
            PHAIPSRMTIG LIEC++ K+A  +G   DA+PFTDVTVD IS  L   GY  RG E MY
Sbjct: 602  PHAIPSRMTIGHLIECLLSKLATLVGTAADASPFTDVTVDAISAELFSLGYHSRGLEVMY 661

Query: 1037 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
            NGH+GR+L + +F GPTYYQRLKHMVDDKIHSR RGP+QILTRQP EGRSRDGGLRF
Sbjct: 662  NGHSGRKLYSQVFFGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 718


>gi|83415473|gb|ABC17944.1| RNA polymerase II second largest subunit, partial [Conidiobolus
            coronatus]
          Length = 727

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/726 (62%), Positives = 565/726 (77%), Gaps = 30/726 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KR+DLAGPLL  LF++LF K  +D+  Y+QKC+D+ ++ N+  A+K  TIT+GLKYSLAT
Sbjct: 2    KRMDLAGPLLTQLFKVLFAKFNKDLAKYLQKCIDSNREFNMNMAVKPNTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A   RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNL+L+ +++VGS A  I  +L ++ TE+ E+       + TKIF+N
Sbjct: 122  PAETPEGQACGLVKNLSLLAHVSVGSPADGINSYLNDYYTESLEQSQHFRDIRGTKIFLN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+H D   LVK L+ LR RVD++ E+ VVRDIR +E+ I+TD GR  RPLF+V++ 
Sbjct: 182  GDWIGMHNDGPRLVKILKALRCRVDLSPEISVVRDIRDREVHIFTDAGRVCRPLFVVDEC 241

Query: 637  RLLIKKR--DIIALQQRESPEDGGWHDLVA------KGFIEYIDTEEEETTMISMTINDL 688
            +LL+ KR  +++ LQ++    D     +        K  ++YI  +EEET +I M+  DL
Sbjct: 242  KLLLTKRHIELLKLQEKLDSFDDQKTSMSVQDREKIKNQMQYIGADEEETCLICMSYEDL 301

Query: 689  VQARL-------HPEE-------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            + A+         P+               Y+  +THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 302  LDAKYFFDHHQPRPKNITDFSARVTMDMGVYSTKWTHCEIHPSMILGICASIIPFPDHNQ 361

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMGIY++NYQ RMDTLA +LYYPQKPLV TR+ME+L FR+LPAG NA
Sbjct: 362  SPRNTYQSAMGKQAMGIYLSNYQLRMDTLANILYYPQKPLVATRSMEYLRFRELPAGQNA 421

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAI CYSGYNQEDSVIMNQSSIDRG FRS+F+R+Y D+EK++G+   E F +P R +T+
Sbjct: 422  IVAILCYSGYNQEDSVIMNQSSIDRGLFRSMFYRTYMDQEKQVGSKKLEIFEKPTRESTL 481

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQASRYTRRDHSISLRHS 907
             ++HG+Y+KL+DDGL  PG RVSG+D+IIGKT PI   DE  GQ + +T+RD S  LR +
Sbjct: 482  RLKHGTYEKLEDDGLIAPGIRVSGDDIIIGKTVPIPDDDEELGQRTNHTKRDASTPLRST 541

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            ETG+VDQV+LTTN DGL+FVKVRVRS R+PQ+GDKF+SRHGQKGT+G+TY QEDMP+T +
Sbjct: 542  ETGIVDQVMLTTNNDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTYRQEDMPFTAD 601

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            G+TPD+I+NPHAIPSRMTIG L+EC++GKV   +G EGDATPFTDVTVD+ISK L   GY
Sbjct: 602  GLTPDLIINPHAIPSRMTIGHLVECLLGKVGTMLGAEGDATPFTDVTVDSISKQLELRGY 661

Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1087
            Q RGFE MYNGHTGR+LTA ++ GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSR
Sbjct: 662  QKRGFEVMYNGHTGRKLTAQVYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSR 721

Query: 1088 DGGLRF 1093
            DGGLRF
Sbjct: 722  DGGLRF 727


>gi|145512048|ref|XP_001441946.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409207|emb|CAK74549.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1214

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1209 (41%), Positives = 751/1209 (62%), Gaps = 78/1209 (6%)

Query: 19   EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78
            E + +  +D W V+  +F+  GLV QQ+ S++ F++N ++ +        +R + Q+   
Sbjct: 24   EHQRLDNDDIWKVLQMFFQTHGLVSQQIGSYESFVENVIKFVRGHEGTFVVRVKPQYKEE 83

Query: 79   Q-QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD--VTKR 135
            + Q  + E +Y+    + ++ K  +   D     +FP  ARLR+LTYS  L +D  VT +
Sbjct: 84   ERQEAYLEYLYQFQITRCFMGKKNI-HVDKFEEEIFPMIARLRDLTYSRQLKIDLEVTMQ 142

Query: 136  VIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQN-SEKDLTEL----GECPYDQG 190
               K     E    Q F  +   K+PIM+RS +C+L ++  + +L +L    GEC +DQG
Sbjct: 143  QRNKRDGTIEEKSKQQFKGLPFFKLPIMVRSRFCSLQKDPKDAELIQLRIQNGECGFDQG 202

Query: 191  GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS-TMFVRML 249
            GYFI+ GSEKV++AQE+++ N V VFK +  NK  +VAE+RS  +  + P    + +R +
Sbjct: 203  GYFILRGSEKVIVAQERIANNVVLVFKSKIVNK-PWVAEIRSQPDLFSNPNVFKVELRYI 261

Query: 250  SRTSAKGGSSGQYIRATLPYIRTE--IPIIIVFRALGFVADKDILEHICYDFQDT---QM 304
              T          IR ++    +   IP+  +FRALG  +D++ILE I Y+ +D     M
Sbjct: 262  QNTPV--------IRCSVKQFNSTQGIPLFTLFRALGISSDQEILERIVYNLEDEFMGPM 313

Query: 305  MELLRPSLEEAFVIQNQQVALDYIGKR-GATVGVTRDKRIKYAKEILQKEMLPHVGTGDF 363
            +E+L  SL+E    +++++ L +IG +         +  I+ AK+++ K +LPH+G    
Sbjct: 314  LEMLYGSLQEGGEYEDEELCLRWIGNKIKKAENQDPETLIQEAKKLINKNILPHIGVSTE 373

Query: 364  CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 423
               +KAY+ GYI+HRLL  +LG+  +DDRDHYG KRLD+AG ++ G+F+  F +  ++ +
Sbjct: 374  SRDRKAYFLGYIVHRLLNASLGKTDQDDRDHYGKKRLDMAGAMMMGVFKTSFEQFKQNSK 433

Query: 424  AYVQKCVDNGK--------------DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGT- 468
              ++K ++ G+                +++     + I+  +  +LATGNWG++      
Sbjct: 434  KALEKYINGGRRGRGQQTKIENMRQPDDIKSFFDGEQISKDIDNALATGNWGRSKEGQVV 493

Query: 469  RAGVSQVLNRLT-YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
            + GV+Q L R T   +TLSHLRR+N+PI  + KL+KPRQLHN+ +G +CPAETPEGQ  G
Sbjct: 494  KTGVAQTLKRETSLFATLSHLRRMNAPINPQMKLSKPRQLHNTHFGFICPAETPEGQKIG 553

Query: 528  LVKNLALMVYIT---VGSAAYPILEFLEEWGTENFE------EISPAVIPQATKIFVNGC 578
            +VKNL+LM  ++          +L+ +      +F+      +     IP+ TK+ V+G 
Sbjct: 554  IVKNLSLMTTVSNDLQSKDKETLLKLIMVSQQNDFDFILLQGDFQAQDIPRMTKVLVDGN 613

Query: 579  WVGIHRDPEMLVKTLRRLRRRVD--VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            W+G  R+PE  +   + LR   +  +  EV +  D   KE+RIYTD GRC RPLFIV+  
Sbjct: 614  WIGFTRNPEQFIHEFKNLRSAEESYIPIEVSINFDYVNKEIRIYTDAGRCMRPLFIVQNN 673

Query: 637  RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE 696
            +L + K  +  +          W +L+    +E +D EEEE ++I+M I+ +++   + +
Sbjct: 674  KLKLMKGVLNQIND--------WEELLKNKCVELLDVEEEEGSLIAMDIDIMMRGTQNFK 725

Query: 697  EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 756
                  YTHCEIHP ++ GVCAS+IPF +HNQ PRNT QSAMGKQAMG+  TN+  R DT
Sbjct: 726  R-----YTHCEIHPCMMFGVCASVIPFANHNQGPRNTLQSAMGKQAMGLNSTNFNIRFDT 780

Query: 757  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 816
            L ++L+YPQKPL ++RA++ +   ++P GIN + +IAC++GYNQEDS+I+NQ +IDRGFF
Sbjct: 781  LVHILHYPQKPLASSRAVDFITVNEVPIGINCVTSIACFTGYNQEDSIIINQYAIDRGFF 840

Query: 817  RSLFFRSYRD-EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 875
            RS+F+R+Y++ E+K      +    +P   N  G     + KLD DG+ PPGT+V  E+ 
Sbjct: 841  RSVFYRTYKESEDKDPDNFTETKITKPIGDNFAG---KLFIKLDSDGIVPPGTKVDEEEP 897

Query: 876  IIGKTTPISQ---DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
            IIGK   I     + A GQ +    ++ S+  R +E G+VD VL++ N  G + VKV+VR
Sbjct: 898  IIGKELIIDNIMLNTANGQKNT---KECSLLTRRAERGVVDSVLISENQKGYKLVKVKVR 954

Query: 933  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
            S+RIPQIGDKF SRHGQKGT GMTY QED+P+T+ GI+PD+ +NPH IPSRMTIG LIEC
Sbjct: 955  SLRIPQIGDKFCSRHGQKGTCGMTYRQEDLPYTLVGISPDLTINPHCIPSRMTIGHLIEC 1014

Query: 993  IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1052
            +  K+A+  G+  DATPF  + V++I+  LHK G+Q  G E M N +TG   +  IF+GP
Sbjct: 1015 LSSKLASIKGQFNDATPFAQILVNDIANELHKVGWQKWGNEVMTNPYTGNMFSIPIFVGP 1074

Query: 1053 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 1112
            TYYQRL+H+VDDK+++R RGPV  +TRQP  GRSR GGLRFGEMERDC+I+HG + FLKE
Sbjct: 1075 TYYQRLRHLVDDKMYARSRGPVTGITRQPTHGRSRKGGLRFGEMERDCIISHGTAKFLKE 1134

Query: 1113 RLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD---IVQVHIPYACKLLFQEL 1169
            R +D SDA+RVHVC  CG+ A+ANL+   F C  CKN+ +   I QV +PYA K L QEL
Sbjct: 1135 RTYDVSDAFRVHVCSKCGMFAVANLENQEFYCNLCKNQNNQNKIYQVQMPYAAKTLIQEL 1194

Query: 1170 MAMAIAPRM 1178
            ++M IAPR+
Sbjct: 1195 ISMNIAPRL 1203


>gi|103001984|gb|ABF71530.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            gobiense]
          Length = 719

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/720 (63%), Positives = 554/720 (76%), Gaps = 46/720 (6%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+
Sbjct: 1    DDRDHFGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATK+FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  R
Sbjct: 181  NATKVFVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCR 240

Query: 629  PLFIVEKQ-------RLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEY 670
            PLF+++          L++ K  I  L+  ++ P +           GW  LV  G +EY
Sbjct: 241  PLFVIDNDPKSTNCGNLVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEY 300

Query: 671  IDTEEEETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEI 708
            +D EEEET MI MT  DL                      V+A ++P    A T+THCEI
Sbjct: 301  VDAEEEETVMIVMTPEDLEISRQIQAGYAMPETSDDLNKRVKAPMNPT---AHTWTHCEI 357

Query: 709  HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 768
            HPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL
Sbjct: 358  HPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPL 417

Query: 769  VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE 828
             TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+E
Sbjct: 418  ATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQE 477

Query: 829  KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-E 887
            K++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E
Sbjct: 478  KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAE 537

Query: 888  AQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 946
              GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SR
Sbjct: 538  ELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASR 597

Query: 947  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
            HGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGD
Sbjct: 598  HGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGD 657

Query: 1007 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            ATPFT+VTVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 658  ATPFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 717


>gi|94410934|gb|ABF18585.1| RNA polymerase II second largest subunit, partial [Hygrophorus
            pudorinus]
          Length = 691

 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/692 (65%), Positives = 547/692 (79%), Gaps = 26/692 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV++ K+ NL  A+K +TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLALAVKHQTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSQTP-CTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
             Q+L ++K+ +  L Q    +DG    W  L+  G IE +D EEEET MISMT  DL  +
Sbjct: 240  NQQLALQKKHVKWLNQGYRDDDGEEYKWEQLIKGGIIELLDAEEEETVMISMTPEDLENS 299

Query: 692  RLH-----PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
            RL      P E   D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 300  RLQQSGQDPHENDGDFDPAVRLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 359

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 360  TYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 419

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
             CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+H
Sbjct: 420  LCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLRMKH 479

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 910
            G+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G
Sbjct: 480  GTYDKLEDDGLIAPGTGVIGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENG 539

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQVL+TTN++G +FVKVRVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 540  IVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITYGQEDMPFTAEGIV 599

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ R
Sbjct: 600  PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSR 659

Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            G E M++GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660  GLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMV 691


>gi|281204919|gb|EFA79113.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
          Length = 1965

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/720 (65%), Positives = 559/720 (77%), Gaps = 44/720 (6%)

Query: 19  EEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG 78
           E EEI QED+WAVIS+YF++KGLVRQQLDSFDEFIQNTMQEI+DES  I +RPE+QH+PG
Sbjct: 13  EGEEIVQEDSWAVISSYFKDKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPEAQHHPG 72

Query: 79  QQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
           QQ     + + I FGQIYLSKP  +E DG T  + P  AR+RNLTYSAPLYVD+TK  + 
Sbjct: 73  QQQVHNFSTFSIKFGQIYLSKPT-SEIDGMTQPVTPNQARIRNLTYSAPLYVDITKTQVT 131

Query: 139 KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
           K    EE  E     K+FIGKVPIMLRS YC L + S+ DL  +GECPYDQGGYFIINGS
Sbjct: 132 KDRRDEEPLE-----KIFIGKVPIMLRSKYCMLDETSDVDLPMMGECPYDQGGYFIINGS 186

Query: 199 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
           EKVLIAQEKMS NHVYVFKK  P+KY+YVAE+RS  E+ +RP STM+V+ML + S KG  
Sbjct: 187 EKVLIAQEKMSHNHVYVFKKTPPSKYSYVAEIRSCQETGSRPTSTMYVKML-QNSNKGPI 245

Query: 259 SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
               I+AT+PYI+ ++PI++VFRALGFVADKDILEHICYDF D QMM+L+RPSLEE+FVI
Sbjct: 246 G---IKATIPYIKQDVPIVVVFRALGFVADKDILEHICYDFSDQQMMDLMRPSLEESFVI 302

Query: 319 QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
           QNQ++ALDY+GKRG+TVG TR++RIK+A+E+LQKEMLPHV   ++ ETKKAYYFGYI+HR
Sbjct: 303 QNQEIALDYLGKRGSTVG-TREQRIKFAREVLQKEMLPHVSVAEYFETKKAYYFGYIVHR 361

Query: 379 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
           LLL AL RR  DDRDH+ NKRLDLAGPLLG LFR LF+KLT+DVR+++Q+C+D G++   
Sbjct: 362 LLLAALERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRSHLQRCIDKGREFIP 421

Query: 439 QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 498
             AIK+KTITSGLKYSLATGNWG AN  G RAGV+QVLNRLT+ASTLSHLRRLN+PIGRE
Sbjct: 422 SQAIKSKTITSGLKYSLATGNWGAAN-TGARAGVAQVLNRLTFASTLSHLRRLNTPIGRE 480

Query: 499 GKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTEN 558
                                  EGQACGLVKNLA+M YI+VGSA+ PILEFLEEW TEN
Sbjct: 481 -----------------------EGQACGLVKNLAMMAYISVGSASQPILEFLEEWSTEN 517

Query: 559 FEEIS-PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
            EEI+  + I  ATKIFVNG WVGIH  P+ L+KTLR LRR  DV+ EV +VRDIR KEL
Sbjct: 518 LEEITDSSTILNATKIFVNGMWVGIHHQPDHLLKTLRVLRRCGDVSVEVSIVRDIREKEL 577

Query: 618 RIYTDYGRCSRPLFIVEKQ--RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
           R+YTD GRC RPLF+V+ +  +L IKK  I   +Q +S  +  W DL+  G +EYIDTEE
Sbjct: 578 RLYTDSGRCCRPLFVVDDKDYKLTIKKSHI---RQLDSDPEYKWLDLITDGLVEYIDTEE 634

Query: 676 EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
           EET MI+MT  DL+ +     E     YTHCEIHPS+ILG+C SIIPFPDHNQSPRNTYQ
Sbjct: 635 EETVMIAMTPADLIPS---TTEIVTHNYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQ 691



 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 273/370 (73%), Positives = 322/370 (87%), Gaps = 2/370 (0%)

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            + SAMGKQAMG+Y+TNYQ RMDT+A+VL+YPQKPLVTTR+ME+LHFR+LPAG N  VAIA
Sbjct: 1102 HNSAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNVCVAIA 1161

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDS+I+NQS+IDRG FRS+F+RSY+DE+KK  ++++E F +PDR   +GMRHG
Sbjct: 1162 CYSGYNQEDSLILNQSAIDRGLFRSMFYRSYKDEQKKQTSMMEETFEKPDRDTCVGMRHG 1221

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQG-QASRYTRRDHSISLRHSETGM 911
            SY+K+D+DGL  PG RV+G+D+IIGKTTP+  QDE  G +  R ++RD S ++R SE G+
Sbjct: 1222 SYEKIDEDGLVAPGVRVTGDDIIIGKTTPLPPQDEDLGPKTRRQSKRDSSTAMRSSENGI 1281

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VD V+LTT+ DGL+F KVRVRS+R PQIGDKFSSRHGQKGT GMTY QED+PWTVEGI P
Sbjct: 1282 VDSVILTTSGDGLKFTKVRVRSMRTPQIGDKFSSRHGQKGTCGMTYRQEDLPWTVEGIVP 1341

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DI+VNPHAIPSRMTIGQLIEC++GKV++  G EGDATPFTDVTV+ ISKALH  GYQM G
Sbjct: 1342 DIVVNPHAIPSRMTIGQLIECLLGKVSSMTGDEGDATPFTDVTVEAISKALHGIGYQMTG 1401

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
             E MYNGHTGRR+ A IF+GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGL
Sbjct: 1402 HEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGL 1461

Query: 1092 RFGEMERDCM 1101
            RFGEMERDC+
Sbjct: 1462 RFGEMERDCV 1471



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 75/87 (86%)

Query: 1094 GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDI 1153
            G +  +CMI+HGA+ FLKERLFDQSD+YRVHVC+ CGLIAIANLKKN +ECR CKNKT I
Sbjct: 1879 GIVAHNCMISHGAAQFLKERLFDQSDSYRVHVCDICGLIAIANLKKNHYECRRCKNKTQI 1938

Query: 1154 VQVHIPYACKLLFQELMAMAIAPRMLT 1180
             QV +PYA KLLFQELMAM+IAPRM T
Sbjct: 1939 SQVKMPYAAKLLFQELMAMSIAPRMFT 1965


>gi|258576891|ref|XP_002542627.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Uncinocarpus
           reesii 1704]
 gi|237902893|gb|EEP77294.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Uncinocarpus
           reesii 1704]
          Length = 884

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/897 (52%), Positives = 612/897 (68%), Gaps = 101/897 (11%)

Query: 20  EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
           EE IT ED W VIS++FE KGLV QQLDSFDEFI  TMQE+V+E   + +    Q    +
Sbjct: 17  EEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTL---DQTIAPE 73

Query: 80  QSDFAETI---YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
           + D    +   Y++ FG + L++P MTE DG T+ + P+ ARLRNLTY++PLY+ +TK+V
Sbjct: 74  EDDPDPVLVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKV 133

Query: 137 --------------------------------------IKKGHDGEEVTETQDFTKVFIG 158
                                                 + +  +GEE         +FIG
Sbjct: 134 AEGRERSLAERDEDEEPEEKGDEERRARGTYLQWAPRALPEDEEGEE--------NIFIG 185

Query: 159 KVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 218
           K+PIML+S YC L    E  L    ECPYD GGYFIINGSEKVLIAQE+ + N V VFKK
Sbjct: 186 KMPIMLKSKYCILKDLGEHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKK 245

Query: 219 RQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIII 278
             P+   +VAE+RS  E  +R  S + +++ ++  +  G  G  IR+TLPYI+T+IPI++
Sbjct: 246 APPSPTPFVAEIRSAVEKGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDIPIVV 305

Query: 279 VFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGAT-VGV 337
           VFRALG V+D+DIL HICYD  DT M+E+L+P +EE FVIQ+++VALD+I KRG++   +
Sbjct: 306 VFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSM 365

Query: 338 TRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGN 397
             +KR++YA++I+QKE LPH+   +  ET+KA++ GY++H+LL CALGRR  DDRDH+G 
Sbjct: 366 NHEKRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGK 425

Query: 398 KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
           KRLDLAGPLL  LFR+LF +LT+D+  YVQ+CV+  + + L+  +KA T+T GLKY+LAT
Sbjct: 426 KRLDLAGPLLANLFRVLFMRLTKDLYKYVQRCVETNRQLYLKIGVKASTLTGGLKYALAT 485

Query: 458 GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
           GNWG Q  AA ++AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 486 GNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 545

Query: 517 PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
           PAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P V P +TKIFVN
Sbjct: 546 PAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKIFVN 605

Query: 577 GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
           G WVG+HRD   LV T++ LRRR  ++ EV ++     KE+                   
Sbjct: 606 GVWVGVHRDASHLVSTVQSLRRRNLISHEVSLLEAD--KEI------------------- 644

Query: 637 RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH-- 694
                  D+ A ++RE     GW  LV  G +EY+D EEEET MI MT  DL  ++ +  
Sbjct: 645 -----PADLDAEERRE--RYYGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEASKQYRA 697

Query: 695 ---PEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
              PEE  +D              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSA
Sbjct: 698 GYIPEEDTSDPNRRVKSKLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 757

Query: 738 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
           MGKQAMG+++TN+  RM+T+A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSG
Sbjct: 758 MGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSG 817

Query: 798 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
           YNQEDSVIMNQSSIDRG FRSLF+R+Y D EK +G  V E F +P RS+T+ M+HG+
Sbjct: 818 YNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGT 874


>gi|94410924|gb|ABF18581.1| RNA polymerase II second largest subunit, partial [Porotheleum
            fimbriatum]
          Length = 689

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/691 (65%), Positives = 547/691 (79%), Gaps = 26/691 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV++ K+ NL  A+K +TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E  EE   A    +TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLEALEE--NANTAASTKVF 178

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIV+
Sbjct: 179  VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVD 238

Query: 635  KQRLLIKKRDIIALQQRESPE--DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
             Q L++KK+ +  L Q E+ E  +  W  LV  G +E +D EEEET MISMT  DL  +R
Sbjct: 239  NQELVLKKKHVRWLTQGETDEGEEFKWEQLVKGGVVELLDAEEEETVMISMTPEDLETSR 298

Query: 693  L-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L       H  +   D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQQAGVDPHANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIAQLEEFEKPLRQNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKLDDDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLDDDGLISPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN++G +FVKVRVRS+R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNSEGQKFVKVRVRSIRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            D+I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAYLRQKGYQQRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 689


>gi|52699784|gb|AAU86954.1| DNA-dependent RNA polymerase II second largest subunit [Athelia
            bombacina]
          Length = 698

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/696 (65%), Positives = 548/696 (78%), Gaps = 25/696 (3%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDL GPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYS
Sbjct: 2    FGKKRLDLXGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYS 61

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WG
Sbjct: 62   LATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 121

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            M+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+
Sbjct: 122  MVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTSP-LTKV 180

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIV
Sbjct: 181  FVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIV 240

Query: 634  EKQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            E  +L++KK+ I  L Q   +  E+  W  LV  G IE +D EEEET MISMT  DL   
Sbjct: 241  EDHQLVLKKKHIRWLSQGLNDEKEEFKWEHLVKSGIIELLDAEEEETVMISMTPEDLEST 300

Query: 692  RL-------HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
            R+       H  +              A T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 301  RMKMQGLDPHANDGDFDPAARLKAGVNATTWTHCEIHPSMILGICASIIPFPDHNQSPRN 360

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMG QAMG ++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 361  TYQSAMGXQAMGXFLTNFLIRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAI 420

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
             CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R +T+ M+H
Sbjct: 421  LCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPSRDSTLRMKH 480

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 910
            G+YDKL+DDG+  PGTRV+GED+IIGKT PI  D E  GQ +  +TRRD S  L+ +E G
Sbjct: 481  GTYDKLEDDGMIAPGTRVNGEDIIIGKTAPIPPDSEELGQRTNLHTRRDVSTPLKSTEKG 540

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQVL+TTN++G +FVKVRVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 541  IVDQVLITTNSEGQKFVKVRVRSSRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIV 600

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ R
Sbjct: 601  PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAYLRQKGYQSR 660

Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            G E MY+GHTGR+L A ++LGPTYYQRLKHMVDDKI
Sbjct: 661  GLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKI 696


>gi|45120582|gb|AAO64686.2| RNA polymerase II subunit RPB2, partial [Coltricia perennis]
          Length = 803

 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/807 (57%), Positives = 589/807 (72%), Gaps = 67/807 (8%)

Query: 205 QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 264
           QE+M+TN VYVF K QP+  +++AE+RS  E   +  S   V+M  R   +  +SG  I+
Sbjct: 1   QERMATNQVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKMYHRGQER--ASGNVIK 58

Query: 265 ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVA 324
           AT+PYI+ +IPI ++FRALG ++D+DILEHIC+D  D QM+E+L+P +++ FVIQ++++A
Sbjct: 59  ATIPYIKVDIPIWVLFRALGVISDRDILEHICFDMNDPQMLEMLKPCIDDGFVIQDREIA 118

Query: 325 LDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCAL 384
           LD+IG RG   G++R+KRI+YA+EILQKEMLPH+   +  E+KKAY+ GY+IHRLLL AL
Sbjct: 119 LDFIGNRGTATGLSREKRIRYAQEILQKEMLPHISMSEGSESKKAYFLGYMIHRLLLAAL 178

Query: 385 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
            RR  DDRDH+G KRLDLAGPLL GLFRMLFRK+T+DV  Y+QKCV++ ++ N+  A+K 
Sbjct: 179 ERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRKMTKDVYRYLQKCVESHREFNINLAVKT 238

Query: 445 KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
             IT+GLKYSLATGNWG Q  A  T+AGVSQVLNR TYASTLSHLRR N+P+GREGK+AK
Sbjct: 239 NVITNGLKYSLATGNWGDQKKAMTTKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAK 298

Query: 504 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
           PRQLHN+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS++  ++ FLEEWG E+ EE  
Sbjct: 299 PRQLHNTHWGMVCPAETPEGQACGLVKNLSLMASISVGSSSALVIXFLEEWGLESLEENV 358

Query: 564 PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDY 623
            +     TK+FVNG W+G+HR+P  LV+TLR +RRR D++TEV +V D R +ELRI TD 
Sbjct: 359 QST--NLTKVFVNGVWLGVHREPTNLVRTLRMMRRREDISTEVSIVHDTRERELRIQTDA 416

Query: 624 GRCSRPLFIVEKQRLLIKKRDIIALQ----------------QRESPEDG---------- 657
           GR  RPLFIVE  +L ++ + +  LQ                + E   DG          
Sbjct: 417 GRVLRPLFIVENHKLNLRPQHLRWLQAGSRIETRPYIPDDEKEAEYQSDGETVVDENTGE 476

Query: 658 ----------------GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE--EAY 699
                           G+  LV    IEY+D EEEET MI MT  +L ++RL  +  +  
Sbjct: 477 KAIDVENMTKKKVKPYGFKGLVTDSVIEYLDAEEEETVMICMTPEELAESRLVRQGLDPR 536

Query: 700 ADT----------------YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 743
           ADT                +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAM
Sbjct: 537 ADTDFDPAARLRTLPISHLFTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAM 596

Query: 744 GIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS 803
           GIY+TN+  R DT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS
Sbjct: 597 GIYLTNFLQRHDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDS 656

Query: 804 VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGL 863
           VIMNQSSIDRG FRSL++R+Y D EK+ G ++ ++F +P R  T+ M+HG+YDKL++DGL
Sbjct: 657 VIMNQSSIDRGLFRSLYYRTYSDAEKRSGAIMVDEFEKPTRETTLRMKHGTYDKLEEDGL 716

Query: 864 APPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNA 921
             PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G +DQV++TTNA
Sbjct: 717 VAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRGHTRRDISTPLKSTEKGFIDQVIVTTNA 776

Query: 922 DGLRFVKVRVRSVRIPQIGDKFSSRHG 948
           +GL+FVK+RVRS R+PQIGDKF+S HG
Sbjct: 777 EGLKFVKIRVRSTRVPQIGDKFASCHG 803


>gi|86559341|gb|ABD04078.1| RNA polymerase II second largest subunit, partial [Aureoboletus
            thibetanus]
          Length = 692

 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/693 (65%), Positives = 547/693 (78%), Gaps = 26/693 (3%)

Query: 401  DLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNW 460
            DL GPLL  LFRM F+KLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLATGNW
Sbjct: 1    DLVGPLLANLFRMAFKKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNW 60

Query: 461  G-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAE 519
            G Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAE
Sbjct: 61   GDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAE 120

Query: 520  TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 579
            TPEGQACGLV+NLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W
Sbjct: 121  TPEGQACGLVRNLALMSGISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVW 179

Query: 580  VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 639
            +G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE Q+L 
Sbjct: 180  MGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLA 239

Query: 640  IKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR---- 692
            ++K+ I  L Q    +DG    W  LV  G IE +D EEEET MISMT  DL  +R    
Sbjct: 240  LQKKHIKWLNQGYRDDDGEEFKWEQLVKSGIIELLDAEEEETVMISMTPEDLENSRSQSA 299

Query: 693  -LHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
             ++ +E+  D              T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 300  GINTQESEVDHDPAARLKAGITAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSA 359

Query: 738  MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
            MGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSG
Sbjct: 360  MGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSG 419

Query: 798  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
            YNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDK
Sbjct: 420  YNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDK 479

Query: 858  LDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQV 915
            L+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VDQV
Sbjct: 480  LEDDGLIAPGTNVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQV 539

Query: 916  LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIV 975
            L+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+++
Sbjct: 540  LITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVI 599

Query: 976  NPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETM 1035
            NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E M
Sbjct: 600  NPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVM 659

Query: 1036 YNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            Y+GHTG++L A I+LGPTYYQRLKHMVDDKIHS
Sbjct: 660  YHGHTGKKLQAQIYLGPTYYQRLKHMVDDKIHS 692


>gi|56694344|gb|AAW22912.1| RNA polymerase II second largest subunit [Torreya californica]
          Length = 514

 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/517 (88%), Positives = 484/517 (93%), Gaps = 3/517 (0%)

Query: 542  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
            S+A PILEFL EW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+TLR+LRR+VD
Sbjct: 1    SSANPILEFLXEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVRTLRQLRRQVD 60

Query: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 661
            VN EVGVVRDIRL+ELR+YTDYGRCSRPLF+VE QRL IKK DI  LQ   S EDG WH+
Sbjct: 61   VNPEVGVVRDIRLRELRLYTDYGRCSRPLFVVENQRLKIKKADINNLQA--SREDG-WHE 117

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
            LV +GFIEY+DTEEEETTMISMTINDLV AR +PE+AY+ TYTHCEIHPSLILGVCASII
Sbjct: 118  LVTQGFIEYVDTEEEETTMISMTINDLVNARTNPEDAYSHTYTHCEIHPSLILGVCASII 177

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 178  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 237

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAGI AIVAIACYSGY QEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+MGTLVKE+FGR
Sbjct: 238  LPAGIXAIVAIACYSGYXQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRMGTLVKEEFGR 297

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 901
            P+R NT GMRHGSYDKLDDDGLAPPGTRVSG DVIIGKTTPI+QDE+ GQ S+YT+RD S
Sbjct: 298  PNRENTXGMRHGSYDKLDDDGLAPPGTRVSGXDVIIGKTTPIAQDESGGQVSKYTKRDQS 357

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
             SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKFS RHGQKGTVGMTYTQED
Sbjct: 358  TSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSXRHGQKGTVGMTYTQED 417

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MPWTVEGITPDIIVNPHAIPSRMTIG LIECIMGKVAAHMGKEGDATPFTDVTVD+ISKA
Sbjct: 418  MPWTVEGITPDIIVNPHAIPSRMTIGXLIECIMGKVAAHMGKEGDATPFTDVTVDSISKA 477

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            LHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 478  LHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 514


>gi|83415487|gb|ABC17951.1| RNA polymerase II second largest subunit, partial [Rhizophlyctis
            rosea]
          Length = 719

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/722 (63%), Positives = 550/722 (76%), Gaps = 30/722 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL GLFRMLF+KLT+D   Y+ K V   KD  L  AI +KTI +GL+YSLAT
Sbjct: 2    KRLDLAGPLLSGLFRMLFKKLTKDTSRYMLKNVQEHKDFELASAINSKTIQNGLRYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q      RAGVSQVLNR TYASTLSHLRRLN+PIGR+GKLAKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKFMSARAGVSQVLNRYTYASTLSHLRRLNTPIGRDGKLAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNL+LM YITVGS   P+ EF++E GT          I Q+TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLSLMSYITVGSPGNPVKEFVKELGTVELASQGVGEISQSTKVFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK- 635
            G WVG+H DPE LV ++R  RR  +V+ E+ +VRD+R  EL + TD GR +RPLFIV+K 
Sbjct: 182  GAWVGVHDDPEYLVNSIREARRGAEVSLELSIVRDVREMELSLVTDAGRIARPLFIVDKD 241

Query: 636  -QRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-- 692
             Q+L I K +I   Q+    ED  +  L+  G +EY+DTEEEETTMI+M+   L   R  
Sbjct: 242  SQKLRITKDNI---QEIMENEDVMFEALLTNGMVEYLDTEEEETTMIAMSPEVLADTRAM 298

Query: 693  -----------------LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
                             L    +    +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 299  RKGTKRIITEKPDGTRRLRGNTSRTKEWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 358

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMG+Y+T+YQ RMDT+A +L+YPQKPL TTR+M++L F++LPAG NAIVAI CY
Sbjct: 359  SAMGKQAMGVYLTSYQTRMDTMANILFYPQKPLATTRSMKYLKFKELPAGQNAIVAIGCY 418

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS- 854
            SGYNQEDS+IMNQSSIDRG FRS+++R Y D EKK+G    E   +PDR  T+ MR G+ 
Sbjct: 419  SGYNQEDSLIMNQSSIDRGLFRSMYYRVYLDTEKKVGLTNTETLEKPDRETTLRMRGGTA 478

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASR---YTRRDHSISLRHSETGM 911
            YDKLDDDGL  PG RV G+D+IIGKT P+ QD ++    R   +T+RD S  L+ +E G+
Sbjct: 479  YDKLDDDGLVIPGKRVLGDDIIIGKTMPL-QDNSEELGQRRANHTKRDSSTPLKSTENGI 537

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQV+LTTN +G +FVKVRVRSVRIPQ+GDKF+SRHGQKGTVG+TY  EDMP+T +GI P
Sbjct: 538  VDQVILTTNGEGFKFVKVRVRSVRIPQMGDKFASRHGQKGTVGITYRTEDMPFTAQGIVP 597

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            D+I+NPHAIPSRMTIG L+EC++GKV A MG EGDATPFTDVTV ++S  L   G+Q RG
Sbjct: 598  DLIINPHAIPSRMTIGHLVECLIGKVGAIMGTEGDATPFTDVTVGSVSDTLKTLGFQPRG 657

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
            FE ++NGHTG++LTA ++ GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGL
Sbjct: 658  FEVLHNGHTGKKLTAQLYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGL 717

Query: 1092 RF 1093
            RF
Sbjct: 718  RF 719


>gi|92090854|gb|ABE73203.1| RNA polymerase II second largest subunit, partial [Hydropus cf.
            scabripes PBM 2513]
          Length = 687

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/687 (65%), Positives = 545/687 (79%), Gaps = 25/687 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+  L  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETQKEFKLAVAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENANSTTP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVEKQ
Sbjct: 181  GVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVEKQ 240

Query: 637  RLLIKKRDI--IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL- 693
            +L +KK+ I  ++  Q +  E+  W  LV  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241  KLALKKQHIKWLSTGQTDDGEEFKWEHLVKGGIIELLDAEEEETVMISMTPEDLENSRLQ 300

Query: 694  ------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
                  H  +   D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301  QSGVSSHANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGI++TN+  RMDT+A +L+YPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361  SAMGKQAMGIFLTNFLIRMDTMANILFYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSSIDRG FRS+++RSY D  KK+G    E+FG+P R NT+ M+HG+Y
Sbjct: 421  SGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLAKKVGQNAGEEFGKPSRENTLRMKHGTY 480

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQ-ASRYTRRDHSISLRHSETGMVD 913
            DKL+DDGL  PGT V GED+IIGKT PI  + E  GQ  S++T+RD S  L+ +E G VD
Sbjct: 481  DKLEDDGLIAPGTGVVGEDIIIGKTAPIPPESEELGQRTSKHTKRDVSTPLKSTENGTVD 540

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QVL+TTN+DG  FVKVRVRS+RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541  QVLITTNSDGQTFVKVRVRSIRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDI 600

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG E
Sbjct: 601  IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSEYLRQKGYQSRGLE 660

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661  VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|410610283|gb|AFV74910.1| RNA polymerase II second largest subunit, partial [Champereia
            manillana]
          Length = 482

 Score =  944 bits (2441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/482 (95%), Positives = 477/482 (98%)

Query: 584  RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 643
            RDP+MLV+TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK+RLLIKK+
Sbjct: 1    RDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKRRLLIKKK 60

Query: 644  DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 703
            DI ALQQRES E+GGWHDLVAKG+IEYIDTEEEETTMISMTINDLV ARL+PEEAY++TY
Sbjct: 61   DIQALQQRESAEEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETY 120

Query: 704  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY
Sbjct: 121  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 180

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS
Sbjct: 181  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 240

Query: 824  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 883
            YRDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT+PI
Sbjct: 241  YRDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPI 300

Query: 884  SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
            +QDE+QGQASRYT+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF
Sbjct: 301  AQDESQGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 360

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK
Sbjct: 361  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 420

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD
Sbjct: 421  EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 480

Query: 1064 DK 1065
            DK
Sbjct: 481  DK 482


>gi|93278283|gb|ABF06597.1| RNA polymerase II second largest subunit, partial [Baeospora myosura]
          Length = 690

 Score =  944 bits (2441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/691 (65%), Positives = 546/691 (79%), Gaps = 25/691 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTP-CTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
             Q+L ++K+ I  + Q   +  E+  W  LV  G IE +D EEEET MISMT  DL  +R
Sbjct: 240  NQQLALQKKHIKWIGQGTNDDGEEYKWEQLVKGGIIELLDAEEEETVMISMTPEDLENSR 299

Query: 693  L-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L       H  +   D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 300  LQQSGVDIHANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 359

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 360  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 419

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 420  CYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPARENTLRMKHG 479

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 480  TYDKLEEDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 539

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN++G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 540  VDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVP 599

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 600  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSMYLRQKGYQSRG 659

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660  LEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 690


>gi|300394706|gb|ADK11891.1| DNA-directed RNA polymerase II subunit two, partial [Gyrodon lividus]
          Length = 690

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/691 (65%), Positives = 546/691 (79%), Gaps = 26/691 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            IVE Q+L ++K+ I  L Q    +DG    W  LV  G IE +D EEEET MISMT  DL
Sbjct: 240  IVENQQLALQKKHIKWLNQGYRDDDGEDFKWEHLVKSGIIELLDAEEEETVMISMTPEDL 299

Query: 689  VQARL-----HPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 729
              +RL     +P E   D              T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 300  ENSRLQSAGINPHENDGDFDPAARLKAGISAHTWTHCEIHPSMILGVCASIIPFPDHNQS 359

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360  PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F RP R +T+ 
Sbjct: 420  VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFERPTRDSTLR 479

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 907
            M+HG+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480  MKHGTYDKLEDDGLIAPGTNVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E G+VDQVL+TTN++G +FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540  ENGIVDQVLITTNSEGQKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            GI PD+++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600  GIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            Q RG E MY+GHTG+++ A ++LGPTYYQRL
Sbjct: 660  QSRGLEVMYHGHTGKKIQAQVYLGPTYYQRL 690


>gi|56694354|gb|AAW22917.1| RNA polymerase II second largest subunit [Thuja plicata]
          Length = 514

 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/517 (86%), Positives = 480/517 (92%), Gaps = 3/517 (0%)

Query: 542  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
            S+A PILEFLEEW TENFEEISPA IP +TKIFVNGCWVGIHRDPE+LV+TLR+LRR+VD
Sbjct: 1    SSANPILEFLEEWSTENFEEISPAAIPTSTKIFVNGCWVGIHRDPELLVRTLRQLRRQVD 60

Query: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 661
            VN EVGVVRDIRL+ LR+YTDYGRCSRPLF+VE QRL IKK  I  LQ   S  + GWH+
Sbjct: 61   VNPEVGVVRDIRLRXLRLYTDYGRCSRPLFVVENQRLKIKKAHIDHLQ---SSREDGWHE 117

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
            L+ +G IEY+DTEEEETTMISMTI DLV AR +PE+AY+ TYTHCEIHPSLILGVCASII
Sbjct: 118  LITQGCIEYVDTEEEETTMISMTIXDLVNARTNPEDAYSHTYTHCEIHPSLILGVCASII 177

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQ PLVTTRAMEHLHF Q
Sbjct: 178  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQXPLVTTRAMEHLHFXQ 237

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK+ GTLVKE+FGR
Sbjct: 238  LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKRAGTLVKEEFGR 297

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 901
            P+R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+QD++ GQ S+YT+RD S
Sbjct: 298  PNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSAGQVSKYTKRDQS 357

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
             SLRHSE+GMVDQVLLTTN DGLRFVKVR+RSVRIPQIGDKF SRHGQKGTVGMTYTQE 
Sbjct: 358  TSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFXSRHGQKGTVGMTYTQEX 417

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MPW VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD+ISKA
Sbjct: 418  MPWXVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKA 477

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            LHKCGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRL
Sbjct: 478  LHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 514


>gi|357289763|gb|AET73076.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 12T]
 gi|357292563|gb|AET73899.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 14T]
          Length = 1202

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1217 (41%), Positives = 725/1217 (59%), Gaps = 64/1217 (5%)

Query: 4    DDYDYEEQHQQEEEDEEEEITQEDA-WAVISAYFEE---KGLVRQQLDSFDEFIQNTMQE 59
            +D + +++    E+    +I  E+A WA+I ++F+    K L+R Q++S++  +   +++
Sbjct: 11   NDEEIKDETNTNEKSVVAKINDEEAPWALIESHFKNQHLKQLIRHQIESYNYLVNTQLEQ 70

Query: 60   IVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARL 119
             +  +    IR  S+H+  ++ +    +  ++     + +P + E++G T  +FP+ ARL
Sbjct: 71   TI--AMFNPIRICSEHDWEKEYNLHRLVAHVTLENFNIHRPQVYENNGATKIMFPQEARL 128

Query: 120  RNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVF----IGKVPIMLRSSYCTLYQNS 175
            RN TY+  + VD+  +   +  +GE    TQ + KV     IGK+PIMLRS  C L Q  
Sbjct: 129  RNFTYAGAMTVDLNIKYTVR--NGENYKNTQTYNKVLKNIHIGKLPIMLRSDICVLSQYK 186

Query: 176  EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN-KYAYVAEVRSMA 234
              +  + GEC  D GGYFIINGSEK  +AQE+ + N +  F   + N K+ + AE++ + 
Sbjct: 187  HLNTDQTGECKMDPGGYFIINGSEKTCLAQERAAENQIACFNISKNNTKWTWNAEMKCIP 246

Query: 235  ESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 294
              +   P  +    L R++   G  G  I   +P ++  IP+ I+FRA   ++DKD+ E 
Sbjct: 247  HWKCISPKQI---NLYRSTKDNGF-GNSIYLQIPRLKNPIPLFIIFRAFNIISDKDVCEK 302

Query: 295  ICYDFQDTQ---MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKY------ 345
            +  D  D +   M+  L+ S+ +A      + AL+YI        +  DK   Y      
Sbjct: 303  VILDIDDKKHRRMLYGLQGSIVDANTCLTYEDALNYIISNVIYTPLNVDKETGYKRKHDF 362

Query: 346  AKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 405
            A E++  ++ PH  T      +K Y  GY+ ++LL  + G     DRD Y NKR+DL G 
Sbjct: 363  ALEVINNDIFPHCRT----TAQKVYMLGYMTNKLLQTSFGWMEPTDRDSYLNKRVDLTGS 418

Query: 406  LLGGLFRMLFRKLTRDVRAYVQKCVDNG------------KDVNLQFAIKAKTITSGLKY 453
            L+  LFR    KL +D++  V + +++G               N+   IK+ TI +G+K 
Sbjct: 419  LINNLFRNYLNKLVKDMQKQVVREINSGSWKSNEDYENIINSTNIYKIIKSVTIENGIKR 478

Query: 454  SLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            +LATG++G       + GV+QVLNRLTY S++SHLRR+N+PI + GKL  PR+LHNS WG
Sbjct: 479  ALATGDFGIKQINSNKVGVAQVLNRLTYISSISHLRRVNTPIDKSGKLVPPRRLHNSSWG 538

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI--SPAVIPQAT 571
             +CPAETPEG + G+VKNL+ M ++T+ +    + +++    T+  E +  +   +    
Sbjct: 539  FLCPAETPEGASVGIVKNLSYMTHVTIPTNTTILYDYIMPMVTD-IETLGDNAKSLHDKV 597

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+F+NG WVGI  +P  L K ++  + +  +N    V+ D +L E+++  D GR +RP+ 
Sbjct: 598  KVFINGVWVGITEEPLELFKNIKEKKYKGIINIYTSVIFDCKLLEIKVCNDAGRLTRPVL 657

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG-----FIEYIDTEEEETTMISMTIN 686
             VE   +L  K     L  +    +  W+DL+  G      IEYID+ E+  TMI+M  +
Sbjct: 658  KVENNAVLYTKE----LFHKVRAGELNWNDLLYSGKIPQSAIEYIDSNEQNNTMIAMEPD 713

Query: 687  DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746
             L       +  Y   Y+HCEIHPS I GV AS IPFP++NQSPRNTYQSAMGKQA+G+Y
Sbjct: 714  QLTAT----DSKYVYHYSHCEIHPSTIFGVVASCIPFPENNQSPRNTYQSAMGKQALGMY 769

Query: 747  VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806
            VTNY  RMD  AYVL YP +PLV TR M+ +    +P+G   IVAI  +SGYNQEDSV+ 
Sbjct: 770  VTNYDNRMDKTAYVLSYPMRPLVDTRLMDIIKLNTIPSGEQVIVAIMSHSGYNQEDSVLF 829

Query: 807  NQSSIDRGFFRSLFFRSYRDEEKKM-GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAP 865
            N+ SIDRG F +  + + +DE+KK+ G   +E   +PD++ T  M+  +YDK++  GL P
Sbjct: 830  NKGSIDRGLFLATIYHTEKDEDKKLYGN--EEMRCKPDKTKTKNMKFANYDKINSQGLVP 887

Query: 866  PGTRVSGEDVIIGKTTPISQDEAQ-GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGL 924
              T V   D+II K  PI +++    +  +YT  D S   R  E   +D+    +N DG 
Sbjct: 888  ENTLVEDRDIIIAKVLPIKENKNDYTKTIKYT--DESHVHRTGEETFIDKNYSESNGDGY 945

Query: 925  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 984
             F KVR+RSVR P IGDKFSSRHGQKGT+G    ++DMP+T +G+ PDII+NPHAIPSRM
Sbjct: 946  NFCKVRLRSVRRPVIGDKFSSRHGQKGTIGNIIEEKDMPFTADGLKPDIIINPHAIPSRM 1005

Query: 985  TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL 1044
            TI QL E ++GKV   MG  GD T F+   + +I+  L K GY+  G E MYN  TG ++
Sbjct: 1006 TIAQLKETLLGKVLIQMGLYGDGTSFSKFKIGDIASELQKLGYESNGNEVMYNALTGEQM 1065

Query: 1045 TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH 1104
             + IF+GP +YQRLKHMV+DK HSR  GP+  LTRQPAEGR+RDGGLRFGEMERDCMI+H
Sbjct: 1066 PSSIFIGPAFYQRLKHMVNDKQHSRSIGPMVNLTRQPAEGRARDGGLRFGEMERDCMISH 1125

Query: 1105 GASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKL 1164
            GAS F K RL+D SDAY VHVC  CGLIA  N  +    C  C+N+TD   V IPY+CKL
Sbjct: 1126 GASRFTKGRLYDASDAYSVHVCNKCGLIASYNKAQQIHICNTCENRTDFRYVEIPYSCKL 1185

Query: 1165 LFQELMAMAIAPRMLTK 1181
            +FQEL  M IAPR++ +
Sbjct: 1186 MFQELYTMNIAPRIMCQ 1202


>gi|300394702|gb|ADK11889.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora sp.
            Braz-6]
          Length = 693

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/694 (65%), Positives = 547/694 (78%), Gaps = 27/694 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSST-VCT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 687
            IVE Q+LL++K+ I  L Q     E  E+  W  LV  G IE +D EEEET MI+MT  D
Sbjct: 240  IVENQQLLLQKKHIKWLNQGYRDDEPAEEFKWDQLVKGGVIELLDAEEEETVMIAMTPED 299

Query: 688  LVQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            L  +RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 300  LENSRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQ 359

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR LPAG NA
Sbjct: 360  SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRGLPAGQNA 419

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420  IVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTL 479

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 906
             M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ 
Sbjct: 480  RMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKS 539

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540  TENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGI PD+++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + G
Sbjct: 600  EGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKG 659

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            YQ RG E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 660  YQSRGLEVMYHGHTGRKLRAQVYLGPTYYQRLKH 693


>gi|300394734|gb|ADK11905.1| DNA-directed RNA polymerase II subunit two, partial [Porphyrellus
            porphyrosporus]
          Length = 689

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/690 (65%), Positives = 543/690 (78%), Gaps = 26/690 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1    DHLGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            IVE Q+L ++K+ I  L Q    +DG    W  LV  G IE +D EEEET MISMT  DL
Sbjct: 240  IVENQQLALQKKHIKWLNQGYRDDDGEKFKWEQLVKTGIIELLDAEEEETVMISMTPEDL 299

Query: 689  VQARL-----HPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQS 729
              +RL     +P E   D              T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 300  ENSRLQSAGINPHENDGDFDPAARLKAGINAHTWTHCEIHPSMILGVCASIIPFPDHNQS 359

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360  PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ 
Sbjct: 420  VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLR 479

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 907
            M+HG+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480  MKHGTYDKLEDDGLIAPGTNVKGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E G+VDQVL+TTN++G +FVKVRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540  ENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            G+ PD+I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600  GVVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
              RG E MY+GHTG++L A I+LGPTYYQR
Sbjct: 660  HSRGLEVMYHGHTGKKLQAQIYLGPTYYQR 689


>gi|55583684|gb|AAV53361.1| RNA polymerase II second largest subunit [Flammulina velutipes]
          Length = 691

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/693 (65%), Positives = 549/693 (79%), Gaps = 27/693 (3%)

Query: 411  FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
            FRMLFRKLTRDV  Y+QKCV+  K+ N+   +K +TIT+GLKYSLATGNWG Q  +  ++
Sbjct: 1    FRMLFRKLTRDVYRYLQKCVETRKEFNVNVGVKHQTITNGLKYSLATGNWGDQKKSMSSK 60

Query: 470  AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
            AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLV
Sbjct: 61   AGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLV 120

Query: 530  KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
            KNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVNG W+G+HRDP  L
Sbjct: 121  KNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVNGVWMGVHRDPANL 179

Query: 590  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQ 649
            VKT+++LRR+ D++ EV +VRDIR KELR+YTD GR  RPLFIVE Q+L+++K+ +  + 
Sbjct: 180  VKTIKKLRRKDDISPEVSLVRDIREKELRLYTDPGRVCRPLFIVENQQLVLQKKHVKWIV 239

Query: 650  QRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR-------LHPEEAY 699
             R S +DG    W  L+  G IE +D EEEET MISM+ +DL  +R        H  E  
Sbjct: 240  -RGSDDDGQEYKWEQLIKTGIIELLDAEEEETVMISMSPDDLETSRNQQSGLDTHTNEGE 298

Query: 700  AD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 747
             D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGI++
Sbjct: 299  FDPAARLKAGVNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFL 358

Query: 748  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 807
            TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMN
Sbjct: 359  TNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMN 418

Query: 808  QSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPG 867
            QSS+DRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL+DDGL  PG
Sbjct: 419  QSSVDRGLFRSIYYRSYMDVEKKSGVQALEEFEKPQRDTTLRMKHGTYDKLEDDGLIAPG 478

Query: 868  TRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLR 925
            T V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++DQVL+TTNA+G +
Sbjct: 479  TGVRGEDIIIGKTAPIPPDSEELGQRTRLHTRRDVSTPLKSTESGIIDQVLITTNAEGQK 538

Query: 926  FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 985
            FVKVRVR+ RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI PDII+NPHAIPSRMT
Sbjct: 539  FVKVRVRATRIPQTGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMT 598

Query: 986  IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 1045
            IG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E MY+GHTGR+L 
Sbjct: 599  IGHLVECLLSKVATLIGHEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQ 658

Query: 1046 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
            A ++LGPTYYQRLKHMVDDKIHSR RGPVQILT
Sbjct: 659  AQVYLGPTYYQRLKHMVDDKIHSRARGPVQILT 691


>gi|110669594|gb|ABG81892.1| RNA polymerase II second largest subunit [Mycoblastus sanguinarius]
          Length = 709

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/709 (63%), Positives = 551/709 (77%), Gaps = 41/709 (5%)

Query: 399  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 458
            RLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+N K+ N+  A+K+ T+T+GLKYSLATG
Sbjct: 1    RLDLAGPLLAGLFRMLFHKLTKDVFKYLQKCVENNKEFNMTLAVKSTTLTNGLKYSLATG 60

Query: 459  NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 517
            NWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 61   NWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 120

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATKIFVNG
Sbjct: 121  AETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLSSPNATKIFVNG 180

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 637
             WVG+HRDP  LV+T++ LRR+  ++ EV +VRDIR +E +I+TD GR  RPLF+++   
Sbjct: 181  VWVGVHRDPAHLVRTVQNLRRKGLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDS 240

Query: 638  -------LLIKKRDIIALQQ----------RESPEDG-GWHDLVAKGFIEYIDTEEEETT 679
                   L++ K D+I L+           +E  E G GW  LV KG +EY+D EEEET 
Sbjct: 241  KSDNRGGLVLTKEDVIKLEDDREIAAEMDAQEKEEQGVGWQGLVKKGVVEYVDAEEEETI 300

Query: 680  MISMTINDLVQARL--------------------HPEEAYADTYTHCEIHPSLILGVCAS 719
            MI MT  DL  +R                      P +A A T+THCEIHPS+ILG+CAS
Sbjct: 301  MIVMTPEDLEISRQIQAGYTLPEANPDDLNKRVKAPLKATAHTWTHCEIHPSMILGICAS 360

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L F
Sbjct: 361  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 420

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F
Sbjct: 421  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 480

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 897
             +P RS+T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +
Sbjct: 481  EKPMRSDTLKLKHGTYEKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVK 540

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR +E G+VDQVLL+TN+DGLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY
Sbjct: 541  RDASTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 600

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1017
             QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD+
Sbjct: 601  RQEDMPFTGEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEVTVDS 660

Query: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            +S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661  VSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 709


>gi|119644256|gb|ABL85615.1| RNA polymerase II second largest subunit [Degelia plumbea]
          Length = 718

 Score =  941 bits (2433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/721 (62%), Positives = 557/721 (77%), Gaps = 47/721 (6%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV++ ++ NL   IK+ T+T+
Sbjct: 1    DDRDHFGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGIKSTTLTN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM YITVGS + PI++F+ +   E  EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIDFMMKRNMEILEEYEPLRSP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATK+FVNG WVG+HRDP  LV  ++ LRRR  ++ EV +VRDIR +E +I+TD GR  R
Sbjct: 181  NATKVFVNGVWVGVHRDPAHLVSNVQSLRRRHWISHEVSLVRDIRDREFKIFTDAGRVCR 240

Query: 629  PLFIVEKQ-------RLLIKKRDIIALQQRE------SPEDG-----GWHDLVAKGFIEY 670
            PLF++E          L++ K  I+ L++ +       PE+      GW  LV +G +EY
Sbjct: 241  PLFVIENDAKNPNCGNLVLTKGHILRLEEDKELGADMDPEEREERFMGWEGLVNQGVVEY 300

Query: 671  IDTEEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCE 707
            +D EEEET MI MT  DL                       V+A++ P    A T+THCE
Sbjct: 301  VDAEEEETVMIVMTPEDLDISRQVQAGHDPEPPPDDDPNRRVKAKMSPT---AHTWTHCE 357

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY+ RMDT+A +LYYPQKP
Sbjct: 358  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKP 417

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+
Sbjct: 418  LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQ 477

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 886
            EK++G  + E F +P +S+T+ ++HG+YDKLDDDG+  PG RV G+D++IGKT PI+ D 
Sbjct: 478  EKRVGMTIVEQFEKPMKSDTLKLKHGTYDKLDDDGIVSPGVRVFGDDIVIGKTAPIAPDA 537

Query: 887  EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
            E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ ++PQIGDKF+S
Sbjct: 538  EELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFAS 597

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EG
Sbjct: 598  RHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEG 657

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 658  DATPFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 717

Query: 1066 I 1066
            I
Sbjct: 718  I 718


>gi|83415471|gb|ABC17943.1| RNA polymerase II second largest subunit, partial [Entomophthora
            muscae]
          Length = 726

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/725 (60%), Positives = 558/725 (76%), Gaps = 29/725 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPL+ GLFRMLF+KLT+DV  Y+QKC++  ++ N+  A+K+  I++GL+YSLAT
Sbjct: 2    KRLDLAGPLMAGLFRMLFQKLTKDVTRYLQKCIEAKREFNMSLAVKSTIISNGLRYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A   +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGDQQKAMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE----EISPAVIPQATK 572
            PAETPEGQACGLVKNLALM YITVG+   P++ +LEE+  +  +    E   A I   T+
Sbjct: 122  PAETPEGQACGLVKNLALMSYITVGTDPQPLVNYLEEYMNDPAKHGDAEAEAADITDHTR 181

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            +F++G  +G  RDP  L+  LRRLRR  D++ E+ +VRDIR++E+R+YTD GR +RPLF+
Sbjct: 182  VFIDGVMMGQERDPLTLIYNLRRLRRNFDISPEISIVRDIRVREIRLYTDAGRVTRPLFV 241

Query: 633  VEKQRLLIKKRDIIALQQRESPE--DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 690
            V   ++L+KK  I  ++   SP   + G+ +L+  G +EY+   EEE ++I M++ +L +
Sbjct: 242  VRDNKILLKKHHIQYIKDGYSPSHPNYGFSNLIENGLLEYLGAHEEECSLICMSLEELEE 301

Query: 691  ARLH-----PEE---------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 730
             RL      PE                 Y+  +THCE+HPS++LG+CA+I+PFPDHNQSP
Sbjct: 302  VRLGRLGNLPEANAVVDMTATIKNSLVGYSYHWTHCEVHPSMVLGICATIVPFPDHNQSP 361

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMG+Y+TNYQ RMDTLA +LYYPQKPLV TR ME L FR+LPAG NAIV
Sbjct: 362  RNTYQSAMGKQAMGVYLTNYQLRMDTLANILYYPQKPLVATRGMEFLRFRELPAGQNAIV 421

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AI CYSGYNQEDSVIMNQSSIDRG FRS+++R+Y D+EKK G +  E F +P  + T+ +
Sbjct: 422  AICCYSGYNQEDSVIMNQSSIDRGLFRSIYYRTYLDQEKKAGLVEMETFEKPTSATTLRL 481

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRY--TRRDHSISLRHSE 908
            RHG+Y+KL+DDGL  PGTRVSG+D+IIGKT P+  D  +    R+  T+RD S  L+ +E
Sbjct: 482  RHGTYEKLEDDGLIAPGTRVSGDDIIIGKTAPVPPDSEELGQRRHGQTKRDVSTPLKSTE 541

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
            TG+VD+V+LT N +G+RF KVRVRS R+PQIGDKF+SRHGQKGT+GMTY  E MP++ EG
Sbjct: 542  TGIVDRVMLTINQEGMRFAKVRVRSTRVPQIGDKFASRHGQKGTIGMTYRNEGMPFSAEG 601

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            I PD+++NPHAIPSRMTIG ++EC++GKV    G EGDATPFT+VTVD IS  L K GYQ
Sbjct: 602  IVPDLVINPHAIPSRMTIGHMVECLVGKVGTLDGSEGDATPFTNVTVDGISGLLEKFGYQ 661

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
             RGFE MYNGHTG++LTA I+ GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRD
Sbjct: 662  KRGFEVMYNGHTGKKLTAQIYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRD 721

Query: 1089 GGLRF 1093
            GGLRF
Sbjct: 722  GGLRF 726


>gi|396941813|gb|AFN89624.1| RNA polymerase II, partial [Cyniclomyces guttulatus]
          Length = 753

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/753 (60%), Positives = 566/753 (75%), Gaps = 31/753 (4%)

Query: 317  VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
            VIQ+++ A  +IG+ G  +G+ ++KRI+ AK+I  KE  PH    +  E++KA+  GY+I
Sbjct: 1    VIQDRETAXXFIGRXGTALGIKKEKRIQXAKDIXXKEFXPHXXQLEXFESRKAFXLGYMI 60

Query: 377  HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDV 436
            +RLLLCAL R+ +DDRDH+G K   LAGPLLG LF+ LFRKLTRD+  Y+Q+ V+   D 
Sbjct: 61   NRLLLCALDRKDQDDRDHFGXKXXXLAGPLLGQLFKTLFRKLTRDIFRYMQRTVEEANDF 120

Query: 437  NLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 495
            N++ AI AKTITS LKY+LATGNWG Q  A  +RAGVSQVLNR TY+STLSHLRR N+PI
Sbjct: 121  NMKLAIXAKTITSXLKYALATGNWGXQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPI 180

Query: 496  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
            GR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VG+   PI+ F  EWG
Sbjct: 181  GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFXSEWG 240

Query: 556  TENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
             E  E+  P   P A+++ VNG W G+HR+P  L++TLR LRR+ D+N EV ++RDIR K
Sbjct: 241  MEPLEDYVPHQSPDASRVXVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREK 300

Query: 616  ELRIYTDYGRCSRPLFIVEKQR------LLIKKRDIIALQQRESPE-DGG--------WH 660
            EL+ +TD GR  RPLFIVE  +      L ++K  I  L   E  + +GG        W 
Sbjct: 301  ELKXFTDAGRVYRPLFIVEDDKELGHKELKVRKGHINKLLTTEYQDIEGGFEDVEEYTWT 360

Query: 661  DLVAKGFIEYIDTEEEETTMISMTINDL--VQARLHPEE-----------AYADTYTHCE 707
             L+ +G +EYID EEEET +I+M   DL  VQ    P +            +A T+THCE
Sbjct: 361  SLLNEGLVEYIDAEEEETILIAMQPEDLEPVQEDEEPTDDLDPAKRIKAVQHATTFTHCE 420

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKP
Sbjct: 421  IHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKP 480

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME+L FR+ PAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+
Sbjct: 481  LGTTRSMEYLKFREXPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ 540

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDE 887
            EKK G  + E F +P R+NT+ M+HG+YDKL  DGL  PG RVSGED+IIGKTTP S DE
Sbjct: 541  EKKYGMSITETFEKPHRTNTLRMKHGTYDKLXXDGLIAPGVRVSGEDIIIGKTTPXSPDE 600

Query: 888  AQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
             + GQ + Y ++RD S  LR +E G++DQVL+TTN DGL+FVKVRVR+ +IPQIGDKF+S
Sbjct: 601  EELGQRTAYHSKRDASTPLRSTENGIIDQVLITTNQDGLKFVKVRVRTTKIPQIGDKFAS 660

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGTVG+TY +EDMP+T EGI PD I+NPHAIPSRMT+  LIEC++ KVAA  G EG
Sbjct: 661  RHGQKGTVGITYRREDMPFTAEGIVPDXIINPHAIPSRMTVAHLIECLLSKVAAISGNEG 720

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1038
            DA+PFT++TV+ ISK L + GYQ RGFE M NG
Sbjct: 721  DASPFTNITVEGISKLLREHGYQSRGFEVMXNG 753


>gi|83415463|gb|ABC17939.1| RNA polymerase II second largest subunit, partial [Cladochytrium
            replicatum]
          Length = 725

 Score =  940 bits (2429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/728 (61%), Positives = 559/728 (76%), Gaps = 36/728 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAG L+GGLFR LF+K+T+++  Y++KCVD     +L++A+K   I +GL++SLAT
Sbjct: 2    KRLDLAGALMGGLFRQLFKKMTKEINNYMRKCVDTNLTFDLKWAVKGNIIKNGLQFSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q      RAGVSQVLNR TYASTLSHLR LN+PIGREGKLAKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKLNAARAGVSQVLNRYTYASTLSHLRHLNTPIGREGKLAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNL+LM  ++V S + P+LEFLE     N +EI P+ I  +T++F+N
Sbjct: 122  PAETPEGQACGLVKNLSLMACVSVASPSRPVLEFLEVLNLNNLDEIRPSQISHSTRVFLN 181

Query: 577  GCWVGIHRDP--EMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            G WVGI  +   E +V  LR LRR+V+V+ E+ +VRD+R KEL IYTD GR  RPLFIV+
Sbjct: 182  GDWVGIVGESAVEEMVTELRNLRRKVEVSPELSIVRDVREKELWIYTDAGRIYRPLFIVD 241

Query: 635  KQ--RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            ++     I++R +  +  RE   D    DL+ +G +EYIDT EEET MI+M+ +DL Q R
Sbjct: 242  EKTHHTFIQRRHVTQIHNRELNFD----DLLVEGLVEYIDTLEEETIMIAMSQSDLTQTR 297

Query: 693  --------------LHPEE------------AYADTYTHCEIHPSLILGVCASIIPFPDH 726
                          L+P              AY+  +THCEIHP++ILG+CASIIPFPDH
Sbjct: 298  TYLLQQADPDIELPLNPHANDTSYRLKPNAGAYSQQWTHCEIHPAMILGICASIIPFPDH 357

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMG ++TNY  R DT+  +L+YPQKPL TTR+ME+L FR+LPAG 
Sbjct: 358  NQSPRNTYQSAMGKQAMGTFLTNYLLRYDTMMNILFYPQKPLGTTRSMEYLRFRELPAGQ 417

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NA VAIACYSGYNQEDS+IMN SSIDRG FRS+++R Y D+EKK+G L  E F +P R  
Sbjct: 418  NACVAIACYSGYNQEDSIIMNXSSIDRGLFRSMYYRVYMDQEKKVGMLQTETFEKPTRET 477

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQASRYTRRDHSISLR 905
            T+ +RHG+Y+KL+DDGL  PG RVSG+D+IIGKT P+ ++ +  GQ    T+RD S  L+
Sbjct: 478  TLRLRHGTYEKLEDDGLIAPGMRVSGDDIIIGKTVPLQTESDELGQRQAQTKRDASTPLK 537

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
             +E G+VD VL+TTN+DG +F+KVRVRSVRIPQ+GDKF+SRHGQKGTVGMTY QEDMP+T
Sbjct: 538  STEQGIVDSVLVTTNSDGYKFIKVRVRSVRIPQMGDKFASRHGQKGTVGMTYRQEDMPFT 597

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
             EGI+PD+IVNPHAIPSRMTIG L+EC++ KVA   G+EGDATPFTD+TV  +S  L++ 
Sbjct: 598  AEGISPDLIVNPHAIPSRMTIGHLVECLLSKVATLTGREGDATPFTDLTVHQVSDLLYEH 657

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            G+Q RGFE +YNGHTG++L A +F+GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGR
Sbjct: 658  GHQQRGFEVLYNGHTGKKLRAQLFMGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 717

Query: 1086 SRDGGLRF 1093
            SRDGGLRF
Sbjct: 718  SRDGGLRF 725


>gi|354992135|gb|AER45774.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
 gi|354992139|gb|AER45776.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/689 (65%), Positives = 543/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992129|gb|AER45771.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/689 (65%), Positives = 543/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGHNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|110669602|gb|ABG81896.1| RNA polymerase II second largest subunit [Lecanora hybocarpa]
          Length = 703

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/704 (64%), Positives = 555/704 (78%), Gaps = 38/704 (5%)

Query: 400  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 459
            LDLAGPLL GLFRMLF KLT+DV  Y+QKCV++ K+ NL  A+K+ T+T+GLKYSLATGN
Sbjct: 1    LDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVEHNKEFNLTLAVKSTTLTNGLKYSLATGN 60

Query: 460  WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
            WG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPA
Sbjct: 61   WGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 120

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALM YITVG+ + P+++F+     E  EE  P   P ATKIFVNG 
Sbjct: 121  ETPEGQACGLVKNLALMCYITVGTPSEPLIDFMISKSMEVLEEYEPVNSPHATKIFVNGV 180

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR- 637
            WVG+HRDP  LV+ +  LRR + ++ EV +VRDIR +E +I+TD GR  RPLF+++++  
Sbjct: 181  WVGVHRDPARLVQMVLALRRGLTISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDQKTG 240

Query: 638  -LLIKKRDIIAL------------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 684
             L++ K DI  L            Q+RE     GWH LV +G +EY+D EEEET MI MT
Sbjct: 241  DLVLTKDDIEKLAVDKEISASLDAQERED-RHLGWHGLVERGVVEYVDAEEEETIMIVMT 299

Query: 685  INDL-----VQARLH-PEE--------------AYADTYTHCEIHPSLILGVCASIIPFP 724
             +DL     +QA +  PEE              A+A T+THCEIHPS+ILG+CASIIPFP
Sbjct: 300  PDDLEISRCIQAGMTIPEEDPEDVNKRRKANASAHAHTWTHCEIHPSMILGICASIIPFP 359

Query: 725  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
            DHNQSPRNTYQSAMGKQAMG+++TNY+ RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 360  DHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFLKFRELPA 419

Query: 785  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 844
            G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P R
Sbjct: 420  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGLAVLEQFEKPMR 479

Query: 845  SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 902
            S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT P++ D E  GQ ++ +T+RD S 
Sbjct: 480  SDTLKLKHGTYDKLDDDGVVAPGVRVSGEDIIIGKTAPMAPDAEELGQRTKAHTKRDVST 539

Query: 903  SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
             LR +E G+VDQVL++TNADGLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 540  PLRSTENGIVDQVLMSTNADGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDM 599

Query: 963  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1022
            P+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++S+ L
Sbjct: 600  PFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEVTVDSVSRLL 659

Query: 1023 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
             + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 660  RQNGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 703


>gi|354992145|gb|AER45779.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/689 (65%), Positives = 544/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P+ TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVPR-TKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|94410910|gb|ABF18576.1| RNA polymerase II second largest subunit, partial [Gymnopus
            contrarius]
          Length = 693

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/694 (65%), Positives = 543/694 (78%), Gaps = 25/694 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYMQKCVEQHKEFNLALAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTP-TT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+R+LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIRKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQ--QRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 689
            IVE Q+L+++K+ I  L   Q +   +  W  LV  G IE +D EEEET MISMT  DL 
Sbjct: 240  IVENQQLVLQKKHIKWLSSGQNDEGSEFKWEHLVKSGIIELLDAEEEETVMISMTPEDLE 299

Query: 690  QARLHPEEA-------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSP 730
             +RL  +                      A T+THCEIHPS+ILG+CASIIPF     SP
Sbjct: 300  NSRLQQQGVDPHTNDGDFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFXXXXXSP 359

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIV
Sbjct: 360  RNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV 419

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M
Sbjct: 420  AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLRM 479

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 908
            +HG+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E
Sbjct: 480  KHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTE 539

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
            +G+VDQVL+TTN++G +FVKVRVRS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 540  SGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEG 599

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            I PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ
Sbjct: 600  IVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSMFLRQKGYQ 659

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             RG E M++GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660  SRGLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMV 693


>gi|354992123|gb|AER45768.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/689 (65%), Positives = 543/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRD+R KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDVREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992111|gb|AER45762.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
 gi|354992133|gb|AER45773.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/689 (65%), Positives = 543/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992115|gb|AER45764.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/689 (65%), Positives = 543/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQRKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|52699816|gb|AAU86970.1| DNA-dependent RNA polymerase II second largest subunit [Gyalecta
            jenensis]
          Length = 714

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/714 (63%), Positives = 553/714 (77%), Gaps = 38/714 (5%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH G KRLDLAGPL+ GLFRMLF KLT+DV  Y+QKCV++GK+ NL   +K+ T+T+GLK
Sbjct: 1    DHXGKKRLDLAGPLMAGLFRMLFNKLTKDVYQYLQKCVESGKEFNLALGVKSTTLTNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YITVGS + PI+EF+     E  EE  P   P +T
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIEFIVSRNMEVLEEYEPTRNPHST 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG+HRDP  LV T++ LRR+  +++EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181  KVFVNGVWVGVHRDPAHLVSTVQTLRRQNMISSEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVEKQR-------LLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDT 673
            +V+  +       L++ K  I  L+  RE P D           GW  LVA G IE++D 
Sbjct: 241  VVDNDKKSPNKGALVLTKELINKLEDDRELPADMDPDEKKERYFGWAGLVANGAIEFLDA 300

Query: 674  EEEETTMISMTINDL-----------------VQARLHPEEAYADTYTHCEIHPSLILGV 716
            EEEET MI+MT  DL                 + AR+  +     T+THCEIHPS+ILG+
Sbjct: 301  EEEETVMIAMTPEDLEISRHMQMGYTIEQNTDINARVKAKINARTTWTHCEIHPSMILGI 360

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT++ +LYYPQKPL TTRAME 
Sbjct: 361  CASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMSNILYYPQKPLGTTRAMEF 420

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY ++EK++G  + 
Sbjct: 421  LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYMEQEKRVGISLV 480

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY 895
            E F +P RS T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ +++
Sbjct: 481  EQFEKPLRSETLRVKHGTYDKLDDDGIIAPGVRVSGEDIIIGKTAPIAPDSEEMGQRTKF 540

Query: 896  -TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
             T+RD S  LR +E G+VD+VL+TTNA+GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G
Sbjct: 541  HTKRDASTPLRSTENGIVDKVLVTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIG 600

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP+T +GI PD+I+NPHAIPSRMTI  LIEC++ KV+A  G EGDATPFTD+T
Sbjct: 601  ITYRQEDMPFTADGIPPDLIINPHAIPSRMTIAHLIECLLSKVSALRGCEGDATPFTDIT 660

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            VD++S  L   GYQ RGFE MYNGHTGR+L A IFLGPTYYQRL+HMVDDKI +
Sbjct: 661  VDSVSDLLRGHGYQSRGFEIMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIXA 714


>gi|45120576|gb|AAO64673.2| RNA polymerase II subunit RPB2, partial [Polyporus arcularius]
          Length = 750

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/753 (60%), Positives = 572/753 (75%), Gaps = 27/753 (3%)

Query: 221 PNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVF 280
           P+  +++AE+RS  E   +  S   V++  R+  +  S G  ++AT+PYI+ +IPI +VF
Sbjct: 1   PSPISFLAEIRSAVEKGGKTISQFQVKLYHRSQER--SLGNVMKATIPYIKVDIPIWVVF 58

Query: 281 RALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRD 340
           RALG ++D+DILEHICYD QD QM+E+L+P ++E FVIQ++++ALDYIG RG T G+ R+
Sbjct: 59  RALGVISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGNRGTTTGLNRE 118

Query: 341 KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRL 400
           +R++YA+EILQKEMLPHV   +  E+KKAY+FGY+IHRLLL AL RR  DDRDH+G KRL
Sbjct: 119 RRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRL 178

Query: 401 DLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNW 460
           DLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNW
Sbjct: 179 DLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNW 238

Query: 461 G-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAE 519
           G Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQL            
Sbjct: 239 GDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLXXXXXXXXXXXX 298

Query: 520 TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 579
            PEGQACGLVKNL+LM  I+VG+ + P++EFLEEWG E+ EE + A  P  TK+FVNG W
Sbjct: 299 XPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENAHASTP-CTKVFVNGVW 357

Query: 580 VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 639
           +G+HRDP  LV+TLR+LRR+ D+N EV VVRDIR +ELR+YTD GR  RPLFIVE Q+LL
Sbjct: 358 MGVHRDPVSLVRTLRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLL 417

Query: 640 IKKRDIIAL-QQRESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL---- 693
           ++KR I  L + ++ P+    W +L+ +G IE +D EEEET MI MT  DL  +RL    
Sbjct: 418 LQKRHIENLVRGKDDPDFAYNWDNLIKEGVIELLDAEEEETVMICMTPEDLENSRLQAQG 477

Query: 694 ---HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 738
              H ++  AD            T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY   M
Sbjct: 478 IDPHADDEDADPSARLKAPTSAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYXXPM 537

Query: 739 GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 798
           GKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGY
Sbjct: 538 GKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGY 597

Query: 799 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKL 858
           NQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+YDKL
Sbjct: 598 NQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKL 657

Query: 859 DDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVL 916
           +DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E G+VDQVL
Sbjct: 658 EDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVL 717

Query: 917 LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
           +TTNA+G +FVK+RVRS RIPQIGDKF+S HGQ
Sbjct: 718 ITTNAEGQKFVKIRVRSTRIPQIGDKFASCHGQ 750


>gi|354992121|gb|AER45767.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/689 (65%), Positives = 542/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D+  EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDIGPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|83415465|gb|ABC17940.1| RNA polymerase II second largest subunit, partial [Dimargaris
            bacillispora]
          Length = 723

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/722 (61%), Positives = 556/722 (77%), Gaps = 26/722 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KR+D+AGPL+  LF+ML  K+++++  Y+QKC+D G+D NL  A+KA T+T+GLKYSLAT
Sbjct: 2    KRMDMAGPLMAQLFKMLLLKMSKEIGRYLQKCIDAGRDFNLTLAVKANTMTAGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q+    TRAGVSQVLNR T+AST SHLRR N+PIGR+GKLAKPRQLHN+ WG++C
Sbjct: 62   GNWGDQSKFMQTRAGVSQVLNRYTFASTXSHLRRCNTPIGRDGKLAKPRQLHNTHWGIVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNL+LM +I++G     ++E L+E   EN EE++P+ I QATK+F+N
Sbjct: 122  PAETPEGQACGLVKNLSLMSHISIGVTEKKLVELLDETAVENLEEVAPSSIAQATKVFIN 181

Query: 577  GCWVGIHR-DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK 635
            G WVGI+  +   L +  R LR+      ++ VV D R +E+R  +D GR  RPLF+V  
Sbjct: 182  GRWVGIYSGNGHELYERYRVLRQTQVELVDITVVYDPREREVRTLSDAGRVCRPLFVVRN 241

Query: 636  QRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            QR+L+ +  I AL  R    DG    ++ LV  G I+Y+D EEEET MI M+  DL  +R
Sbjct: 242  QRILLNRGHISALHNRVDRGDGKPFDFNTLVNFGVIDYMDAEEEETAMICMSSEDLADSR 301

Query: 693  LHPEEAYAD-------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            +  E  Y +                   ++THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 302  MFYEHGYVNDQDRDSTARVKGTSALYIHSWTHCEIHPSMILGICASIIPFPDHNQSPRNT 361

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++T+YQ RMDTLA +LYYPQK L TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 362  YQSAMGKQAMGIFLTSYQSRMDTLANILYYPQKLLATTRSMEYLRFRELPAGQNAIVAIL 421

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDS+IMNQSSIDRG FRSLF+RSY+D+EK++G  V E F +P R  T+ ++HG
Sbjct: 422  CYSGYNQEDSLIMNQSSIDRGLFRSLFYRSYQDQEKRLGMTVMESFDKPTRETTVRLKHG 481

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQ-ASRYTRRDHSISLRHSETGM 911
            +Y+KL+DDGL  PG RVSG+D+IIGKT P+  D  + GQ    +  +D S  LR +ETG+
Sbjct: 482  TYEKLEDDGLIAPGIRVSGDDIIIGKTAPLPDDTTELGQRVVTHANKDVSTPLRSTETGI 541

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQV+LTTN DGL+FVKVR+RS R+PQ+GDKF+SRHGQKGT+G+TY  EDMP++ EGITP
Sbjct: 542  VDQVMLTTNQDGLKFVKVRIRSTRVPQMGDKFASRHGQKGTIGITYRTEDMPFSREGITP 601

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            D+I+NPHAIPSRMTIG L+EC++ K++   G EGDATPFTDVTV+ IS+AL   GYQ RG
Sbjct: 602  DLIINPHAIPSRMTIGHLVECLLSKLSTLTGSEGDATPFTDVTVEAISEALAANGYQQRG 661

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
            FE +YNGHTGR+LTA +F GPTYYQRLKHMVDDKIHSR RGPVQILTRQP EGRSRDGGL
Sbjct: 662  FEVLYNGHTGRKLTAQVFFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGL 721

Query: 1092 RF 1093
            RF
Sbjct: 722  RF 723


>gi|354992125|gb|AER45769.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/689 (65%), Positives = 543/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +F+K+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFIKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|94410920|gb|ABF18579.1| RNA polymerase II second largest subunit, partial [Hemimycena
            gracilis]
          Length = 689

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/690 (65%), Positives = 545/690 (78%), Gaps = 24/690 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSQNP-CTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+Y D GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYADAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDI--IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
             Q+L ++K+ +  I   + +  E   W DLV +G +E +D EEEET MISMT  DL  +R
Sbjct: 240  NQQLALQKKHVRWITEGKDDQGEQFKWGDLVRRGIVELLDAEEEETVMISMTPEDLETSR 299

Query: 693  LHPEEAYAD------------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
            L  +    D                  T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 300  LQQQGMNQDEDEDFDPAARLKAGINSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 359

Query: 735  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
            QSAMGKQAMGI++TN+  RMDT+A +L YPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 360  QSAMGKQAMGIFLTNFLIRMDTMANILCYPQKPLATTRSMEYLKFRELPAGQNAIVAILC 419

Query: 795  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
            YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+
Sbjct: 420  YSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGINQLEEFDKPTRDTTLRMKHGT 479

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 912
            YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+V
Sbjct: 480  YDKLEDDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRMHTRRDVSTPLKSTESGVV 539

Query: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            DQVL+TTN+DG +FVKVRVRS+R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD
Sbjct: 540  DQVLITTNSDGQKFVKVRVRSIRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPD 599

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032
            II+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG 
Sbjct: 600  IIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGL 659

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660  EVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 689


>gi|354992137|gb|AER45775.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/689 (65%), Positives = 542/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGL KNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122  PAETPEGQACGLAKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|379773375|gb|AFD18893.1| RNA polymerase II second largest subunit, partial [Pleurotus eryngii]
          Length = 687

 Score =  937 bits (2422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/689 (65%), Positives = 542/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR  YASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYAYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEFDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992117|gb|AER45765.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  937 bits (2421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/689 (65%), Positives = 542/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +L ++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLFLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992141|gb|AER45777.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/689 (65%), Positives = 542/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEGLGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+ HTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHSHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992127|gb|AER45770.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/689 (65%), Positives = 542/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KE R+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKEPRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992109|gb|AER45761.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/689 (65%), Positives = 542/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS +  ++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISASVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992143|gb|AER45778.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/689 (65%), Positives = 543/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ +L  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFDLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|322510564|gb|ADX05878.1| putative DNA-directed RNA polymerase [Organic Lake phycodnavirus 1]
          Length = 1164

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1198 (42%), Positives = 726/1198 (60%), Gaps = 73/1198 (6%)

Query: 21   EEITQEDAWAVISAYFEE---KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 77
            E   + D+W+VI +YF+    + LV+ Q+DS+++F+QN + + ++    + I+    + P
Sbjct: 2    EHYNETDSWSVIESYFKNTHLQQLVKHQVDSYNDFVQNQLIKTIEMFNPLIIKSPHDYLP 61

Query: 78   GQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT-KRV 136
              +    E   +I+F  + + +P + E++G +  +FP  ARLR+ TYS+   +D+  K  
Sbjct: 62   EYKKYRLEV--EINFVNLSIYRPEIHENNGSSKLMFPSDARLRSFTYSSNFTLDMNIKYT 119

Query: 137  IKKGHDGE-EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFII 195
            I+KG + E E  +    +K+  GK+PIML S  C L Q        + EC  D GGYFII
Sbjct: 120  IRKGANLENEEFKHIHLSKIQFGKIPIMLNSCICVLKQYPHIHPDNIDECKMDPGGYFII 179

Query: 196  NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAK 255
            NGSEK  + QEK + N V+ FK++Q NK+ + AE RS+ + +   P  +++ + S+ SA 
Sbjct: 180  NGSEKTCLGQEKTADNKVFCFKQKQSNKWLWTAEFRSVPDWKCISPKQIYMMLNSKLSAY 239

Query: 256  GGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF-QDTQMMELLRPSLEE 314
            G      I   LP ++  IP+ ++FRALG  +DK I   I  +  ++++++E L+ S+ E
Sbjct: 240  GHD----ILVQLPRLKKPIPLFVLFRALGIESDKKICNIILLNSNKESKLLEYLKASIYE 295

Query: 315  AFVIQNQQVALDYIGKRGATVGVTRDK------RIKYAKEILQKEMLPHVGTGDFCETK- 367
                 N + AL YI        +  DK      + ++AK++L  ++ PH      C+TK 
Sbjct: 296  GAEYNNYEDALQYIISNVIYTPINMDKDEGHRKKTEFAKDVLSNDLFPH------CKTKE 349

Query: 368  -KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
             K Y  G++  +++L   G   + DRD Y NKR++L G LL  LFR  F K+ +D++  V
Sbjct: 350  EKIYLLGFMTKKIILAYSGIEKQTDRDSYENKRVELTGTLLNNLFRNYFNKVVKDIQKQV 409

Query: 427  QKCVDNGK------------DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQ 474
             + ++NG               N+   +K+ TI +GLK +L+TG++G  +    + GV+Q
Sbjct: 410  IREINNGSWKSSEDYFNIITLTNIYKIVKSTTIENGLKRALSTGDFGIKSMNTNKVGVAQ 469

Query: 475  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 534
            VLNRLTY STLSHLRR+N+PI + GKL +PR+LH S WG +CPAETPEGQ+ G+VKN++ 
Sbjct: 470  VLNRLTYLSTLSHLRRVNTPIDKSGKLVEPRKLHGSTWGFLCPAETPEGQSVGVVKNISY 529

Query: 535  MVYITVGSAAYPILEF-------LEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
            M  ++  S + PI EF       L+ + TE+F +          K+FVNG W+GI  +P 
Sbjct: 530  MTNVSTYSDSTPIYEFIKPYLYPLDHYETEDFYD--------KVKVFVNGRWIGITHNPI 581

Query: 588  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA 647
             L K L++ +    ++    +V + + KE+ +  D GR  RPLF V+  ++L+    I  
Sbjct: 582  TLFKDLKQKKHNGMIHIYCSIVFNYQNKEIYVCNDCGRLVRPLFKVKNNKILLTNNTI-- 639

Query: 648  LQQRESPEDGGWHDL-----VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT 702
              QR   ++  W DL     + +  IEYID+ E+  +MI M  N         +E Y   
Sbjct: 640  --QRLKEDELSWRDLLLPLNIDESIIEYIDSAEQNNSMICMKPNQF-------KEEY--N 688

Query: 703  YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 762
            YTHCEIHPS I GV AS IPFP HNQSPRNTYQ AMGKQA+GIYV+N+  RMD  AY+L 
Sbjct: 689  YTHCEIHPSTIFGVLASCIPFPQHNQSPRNTYQCAMGKQAIGIYVSNFNKRMDKTAYILN 748

Query: 763  YPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR 822
            Y  +PLV TR M  +   QLP G   IVAI  + GYNQEDS++ N+ S+DRG F +  + 
Sbjct: 749  YTMRPLVETRVMNMMKLNQLPCGNQVIVAIMTHGGYNQEDSLLFNRGSLDRGLFHATIYH 808

Query: 823  SYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
            + +DE+KK+    +E   +P+ + T  M+ G+YDK++  G+      +  +D+II K   
Sbjct: 809  TEKDEDKKING-EEELRVKPNPNITRNMKFGNYDKINKQGVIDENELIEDKDIIISKVVV 867

Query: 883  ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 942
            I +++           D S S R +E   VD+  +  N DG  F KVRVRS R P IGDK
Sbjct: 868  IKENK-NDNTKLIKYEDQSKSYRTTEECYVDKNYIDRNGDGHTFCKVRVRSTRKPNIGDK 926

Query: 943  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
            FSSRHGQKGT+G    +EDMP+T +G+ PDII+NPHAIPSRMTI QL E ++GK+   +G
Sbjct: 927  FSSRHGQKGTIGNIINEEDMPYTKDGLRPDIIINPHAIPSRMTIAQLKETLIGKLLLKLG 986

Query: 1003 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
              GD T F ++ ++ + K L K  Y+ RG E +Y+G TG ++   IF+GP YYQRLKHMV
Sbjct: 987  LFGDGTSFGEMDMEEVFKELKKHDYESRGNELLYDGKTGEQIETSIFIGPVYYQRLKHMV 1046

Query: 1063 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 1122
            +DK HSR  GP+  LTRQPAEGRSRDGGLRFGEMERDCMI+HGAS F KER++D SD Y 
Sbjct: 1047 NDKQHSRCIGPMVNLTRQPAEGRSRDGGLRFGEMERDCMISHGASKFTKERIYDVSDKYA 1106

Query: 1123 VHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            V+VC+ CG+IA+ N K++   C  C+N+TD   V IPY+CKLLFQEL+ M I PR++T
Sbjct: 1107 VNVCKKCGMIAVYNDKEHIHLCNVCENRTDFSNVKIPYSCKLLFQELITMNIVPRIMT 1164


>gi|410610285|gb|AFV74911.1| RNA polymerase II second largest subunit, partial [Loranthus kaoi]
          Length = 480

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/480 (93%), Positives = 470/480 (97%)

Query: 584  RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKR 643
            RDP+MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK++
Sbjct: 1    RDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKEK 60

Query: 644  DIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTY 703
            DI  LQQRE+ E+GGWH+LVAKGFIEYIDTEEEETTMISMTI+DLV AR++P +AY++TY
Sbjct: 61   DIQVLQQRETAEEGGWHELVAKGFIEYIDTEEEETTMISMTISDLVSARMNPVDAYSETY 120

Query: 704  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 763
            THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY
Sbjct: 121  THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 180

Query: 764  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 823
            PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS
Sbjct: 181  PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 240

Query: 824  YRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 883
            YRDEEKKMGTLVKEDFGRP+R +TMGMRHGSYDKLDDDGLAP GTRVSGEDVIIGKT+PI
Sbjct: 241  YRDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPSGTRVSGEDVIIGKTSPI 300

Query: 884  SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
            +QDE+QGQASR+T+RDHS SLRHSETG+VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF
Sbjct: 301  AQDESQGQASRFTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 360

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            SSRHGQKGT+GMTYTQEDMPWTVEGI PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK
Sbjct: 361  SSRHGQKGTIGMTYTQEDMPWTVEGINPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 420

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRL AMIFLGPTYYQRLKHMVD
Sbjct: 421  EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVD 480


>gi|52699853|gb|AAU86988.1| DNA-dependent RNA polymerase II second largest subunit [Placynthium
            nigrum]
          Length = 716

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/717 (62%), Positives = 551/717 (76%), Gaps = 47/717 (6%)

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ T+T+GLKY
Sbjct: 1    HFGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTLTNGLKY 60

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            SLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 61   SLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 120

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            G++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK
Sbjct: 121  GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNATK 180

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            +FVNG WVG+HRDP  LV T+  LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+
Sbjct: 181  VFVNGVWVGVHRDPAHLVSTVLSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFV 240

Query: 633  VEKQ-------RLLIKKRDIIALQQRE------SPEDG-----GWHDLVAKGFIEYIDTE 674
            ++          L++ K  I+ L+  +       PE+      GW  LV +G +EY+D E
Sbjct: 241  IDNDPKSANCGSLVLTKEHILKLEDDKELGANMDPEEREAKFMGWQGLVNQGVVEYVDAE 300

Query: 675  EEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCEIHPS 711
            EEET MI MT  DL                       V+A L+P    A T+THCEIHPS
Sbjct: 301  EEETVMIVMTPEDLEISKHLQAGFPLEEPSIDDPNRRVKAPLNPT---AHTWTHCEIHPS 357

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TT
Sbjct: 358  MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDLRMDTMANILYYPQKPLATT 417

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            R+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++
Sbjct: 418  RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRI 477

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 890
            G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  G
Sbjct: 478  GMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELG 537

Query: 891  QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            Q ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQ
Sbjct: 538  QRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQ 597

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATP
Sbjct: 598  KGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATP 657

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            FT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI
Sbjct: 658  FTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKI 714


>gi|189006590|gb|ABF18587.2| RNA polymerase II second largest subunit [Infundibulicybe gibba]
          Length = 689

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/690 (65%), Positives = 545/690 (78%), Gaps = 25/690 (3%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYS
Sbjct: 1    FGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            M+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+
Sbjct: 121  MVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKV 179

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG W+G+ RDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIV
Sbjct: 180  FVNGVWMGVXRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIV 239

Query: 634  EKQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            E Q+L+++K+ +  L     +  ++  W  L+  G IE +D EEEET MISMT  DL  +
Sbjct: 240  ENQQLVLQKKHVKWLNHGINDDGDEFKWEQLIKGGIIELLDAEEEETVMISMTPEDLENS 299

Query: 692  RL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
            RL       H  +   D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 300  RLQQSGVDPHANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 359

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 360  TYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 419

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
             CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+H
Sbjct: 420  LCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPMRDNTLRMKH 479

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 910
            G+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G
Sbjct: 480  GTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESG 539

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQVL+TTN++G +FVKVRVRS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 540  IVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIV 599

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ R
Sbjct: 600  PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSR 659

Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            G E M++GHTGR+L A ++LGPTYYQRLKH
Sbjct: 660  GLEVMFHGHTGRKLQAQVYLGPTYYQRLKH 689


>gi|354992113|gb|AER45763.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/689 (65%), Positives = 542/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L  R+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKSRKLPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|300394728|gb|ADK11902.1| DNA-directed RNA polymerase II subunit two, partial [Piloderma
            fallax]
          Length = 686

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/686 (65%), Positives = 541/686 (78%), Gaps = 25/686 (3%)

Query: 391  DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSG 450
            DRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+G
Sbjct: 2    DRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNG 61

Query: 451  LKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 509
            LKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN
Sbjct: 62   LKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHN 121

Query: 510  SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ 569
            + WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P 
Sbjct: 122  THWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEENAHSSTP- 180

Query: 570  ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRP 629
             TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RP
Sbjct: 181  CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRP 240

Query: 630  LFIVEKQRLLIKKRDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTIND 687
            LFIVE Q+L ++K+ I  L Q    ED    W  LV  G IE +D EEEET MISMT  D
Sbjct: 241  LFIVENQQLALQKKHIKWLNQGFDDEDEEFKWEQLVKGGIIELLDAEEEETVMISMTPED 300

Query: 688  LVQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQ 728
            L  +RL       H  ++  D            T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 301  LENSRLQSSGVDPHANDSDFDPAARLKAGTDAHTWTHCEIHPSMILGICASIIPFPDHNQ 360

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 361  SPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 420

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+
Sbjct: 421  IVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRENTL 480

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 906
             M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R + RRD S  L+ 
Sbjct: 481  RMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHNRRDVSTPLKS 540

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E G+VDQVL+TTN++G +FVKVRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 541  TENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 600

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + G
Sbjct: 601  EGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKG 660

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGP 1052
            YQ RG E MY+GH+GR+L A ++LGP
Sbjct: 661  YQSRGLEVMYHGHSGRKLQAQVYLGP 686


>gi|78100240|gb|ABB20921.1| RNA polymerase II second largest subunit, partial [Rhodotorula
            hordea]
          Length = 695

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/696 (63%), Positives = 544/696 (78%), Gaps = 28/696 (4%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  ++QKCV+  K  NL  A+K+ TIT+GLKYSL
Sbjct: 1    GAKRLDLAGPLLAALFRMLFRKLTKDVYRHLQKCVETQKPFNLNSAVKSNTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  A   +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKAMSAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM YI+VGS + PI+EFLEEWG EN EE S + + + TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEWGMENLEEFS-SEMSKGTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W G+HRDP  LV+T++RLRR  D++ EV VVRD+R +ELR++TD GR  RPLFIVE
Sbjct: 180  VNGVWQGVHRDPAHLVETIKRLRRCGDISNEVSVVRDVRERELRLFTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIALQQRES---PEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLV 689
              RL++ + ++ ALQ  ES   P++    W DL+  G +EY+D EEEET MI MT  DL 
Sbjct: 240  DHRLVLTRANVEALQIEESEDRPDEKRMKWTDLLETGVVEYVDAEEEETVMICMTPEDLD 299

Query: 690  QARLHPEEAYAD-------------------TYTHCEIHPSLILGVCASIIPFPDHNQSP 730
             +RL  E                        T+THCEIHPS+ILG+CASIIPFPDHNQSP
Sbjct: 300  TSRLFQETGQVQVDTFDASATVKGSMGVNTHTWTHCEIHPSMILGICASIIPFPDHNQSP 359

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMG+++TNYQ RMDT+A +LYYPQKPL TTR+ME+LHFR+LPAG NAIV
Sbjct: 360  RNTYQSAMGKQAMGVFLTNYQVRMDTMANILYYPQKPLATTRSMEYLHFRELPAGQNAIV 419

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AI CYSGYNQEDSVI+NQSSIDRG FRS ++RSY D+EKK G +  E+F +P R  T+ +
Sbjct: 420  AIMCYSGYNQEDSVILNQSSIDRGLFRSFYYRSYMDQEKKSGAIQMEEFEKPTRDTTLRL 479

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 908
            +HG+Y+KL+ DG+   G RV+GED+IIGKT P+  D E  GQ S+ +T+RD S  ++ +E
Sbjct: 480  KHGTYEKLEADGIIGLGERVAGEDIIIGKTAPLPPDSEELGQRSKNHTKRDVSTPMKSTE 539

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
             G++DQVL+TTN DGL+FVK+RVRS R+P+IGDKF+SRHGQKGT+G+TY  EDMP++ EG
Sbjct: 540  NGIIDQVLVTTNQDGLKFVKIRVRSTRVPEIGDKFASRHGQKGTIGITYRHEDMPFSGEG 599

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
             TPDII+NPHAIPSRMTIG L+EC++ KV+   G EGDATPF++VTV+ IS  L + GY 
Sbjct: 600  TTPDIIINPHAIPSRMTIGHLVECLLSKVSTISGNEGDATPFSEVTVEAISTLLKEMGYH 659

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
             RG E MYNGHTGR+L A ++LGPTYYQRLKHMVDD
Sbjct: 660  SRGLEVMYNGHTGRKLQAQVYLGPTYYQRLKHMVDD 695


>gi|119644161|gb|ABL85609.1| RNA polymerase II second largest subunit [Vulpicida pinastri]
          Length = 718

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/718 (62%), Positives = 554/718 (77%), Gaps = 41/718 (5%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+
Sbjct: 1    DDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GL+YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATKIFVNG WVG+HRDP  LV T+  LRRR  ++ EV +VRDIR +E +++TD GR  R
Sbjct: 181  NATKIFVNGVWVGVHRDPAHLVGTVLNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCR 240

Query: 629  PLFIVEKQ-------RLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEY 670
            PLF+++          L++ K  +  L+  RE+     P+     + GW  LV +G +EY
Sbjct: 241  PLFVIDNDPRSSNEGNLVLTKEHVQKLELDRENWATTEPDVREDTNMGWQGLVKEGVVEY 300

Query: 671  IDTEEEETTMISMTINDL-----VQARLHPEEAYAD---------------TYTHCEIHP 710
            +D EEEET M+ MT  DL     ++A   PE +  D               T+THCEIHP
Sbjct: 301  VDAEEEETIMVVMTPEDLEISRQIRAGFEPEASNPDELSRRVKTPMKQTAHTWTHCEIHP 360

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT+A +LYYPQKPL T
Sbjct: 361  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLAT 420

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK+
Sbjct: 421  TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKR 480

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
            +G  V E F +P RS+T+ ++HG+YDKLD+DGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481  IGMSVVEQFEKPMRSDTLRLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPIAPDAEEL 540

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541  GQRTKLHVKRDVSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDAT
Sbjct: 601  QKGTIGITYRQEDMPFTSEGLVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            PFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+HMVDDKI
Sbjct: 661  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQRLRHMVDDKI 718


>gi|119644141|gb|ABL85608.1| RNA polymerase II second largest subunit [Punctelia rudecta]
          Length = 718

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/718 (62%), Positives = 556/718 (77%), Gaps = 41/718 (5%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+
Sbjct: 1    DDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GL+YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATKIFVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  R
Sbjct: 181  NATKIFVNGVWVGVHRDPAHLVGTVQNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCR 240

Query: 629  PLFIVE-------KQRLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEY 670
            PLF+++       +  L++ K  +  L+  RE+     P+     D GW  LV +G +EY
Sbjct: 241  PLFVIDNDPRSSNRGNLVLTKEHVQKLELDRENWATTEPDVREETDMGWQGLVKEGVVEY 300

Query: 671  IDTEEEETTMISMTINDLVQAR----------LHPEE----------AYADTYTHCEIHP 710
            +D EEEET MI MT  DL  +R           +P+E            A T+THCEIHP
Sbjct: 301  VDAEEEETIMIVMTPEDLEISRQLQAGYAMPEANPDELNKRVKAPMNPTAHTWTHCEIHP 360

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY+ RMDT+A +LYYPQKPL T
Sbjct: 361  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLAT 420

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK+
Sbjct: 421  TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKR 480

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
            +G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481  IGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEEL 540

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541  GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDAT
Sbjct: 601  QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            PFT+VTVD++S+ L + GYQ RGFE MYNGHTG++L   +FLGPTYYQRL+HMVDDKI
Sbjct: 661  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVTQVFLGPTYYQRLRHMVDDKI 718


>gi|110669604|gb|ABG81897.1| RNA polymerase II second largest subunit [Bacidia schweinitzii]
          Length = 720

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/722 (62%), Positives = 549/722 (76%), Gaps = 47/722 (6%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DD DH+G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV++ K+ NL  A+K+ T+T+
Sbjct: 1    DDSDHFGKKRLDLAGPLLAGLFRMLFYKLTKDVFKYLQKCVESNKEFNLTLAVKSTTLTN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  A  ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLNNP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATK+FVNG WVG+H  P  LV T++ LRR+  ++ EV +VRDIR +E +I+TD GR  R
Sbjct: 181  NATKVFVNGVWVGVHSQPANLVNTIKSLRRQGLISYEVSLVRDIRDREFKIFTDAGRVCR 240

Query: 629  PLFIVEKQ-------RLLIKKRDIIALQQRESPEDG-----------GWHDLVAKGFIEY 670
            PLF+V+          L++ K  I  L   E    G           GW  LV  G +EY
Sbjct: 241  PLFVVDNDPKSNNYGNLVLTKDHIQKLVDDEEAGAGMDAQEREEKLIGWQGLVKNGVVEY 300

Query: 671  IDTEEEETTMISMTINDL------------------------VQARLHPEEAYADTYTHC 706
            +D EEEET MI MT  DL                        V+A+ +P + +A  +THC
Sbjct: 301  VDAEEEETIMIVMTPEDLETSRQLHAGYTLPPPDLIEDPNARVKAQTNPTQQHA--WTHC 358

Query: 707  EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
            EIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQK
Sbjct: 359  EIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDVRMDTMANILYYPQK 418

Query: 767  PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
            PL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D
Sbjct: 419  PLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTD 478

Query: 827  EEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 886
            +EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG R+SGED+IIGKT PI+ D
Sbjct: 479  QEKRVGMNVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRMSGEDIIIGKTAPIAPD 538

Query: 887  -EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 944
             E  GQ ++ + +RD S  LR +E G+VDQVLL+TN++GLRFVKVR+R+ ++PQIGDKF+
Sbjct: 539  AEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNSEGLRFVKVRMRTTKVPQIGDKFA 598

Query: 945  SRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1004
            SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV+A  G E
Sbjct: 599  SRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSALQGCE 658

Query: 1005 GDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            GDATPFT+VTVD++SK L   GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDD
Sbjct: 659  GDATPFTEVTVDSVSKLLRVHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDD 718

Query: 1065 KI 1066
            KI
Sbjct: 719  KI 720


>gi|94410904|gb|ABF18573.1| RNA polymerase II second largest subunit, partial [Fistulina
            antarctica]
          Length = 690

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/692 (65%), Positives = 543/692 (78%), Gaps = 26/692 (3%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFRMLFRK+T+DV  Y+QKCV+  KD +L  A+K++TIT+GLKYS
Sbjct: 1    FGKKRLDLAGPLLSNLFRMLFRKVTKDVYRYLQKCVEMRKDFHLNMAVKSQTITNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQ HN+ WG
Sbjct: 61   LATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQXHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            M+CPAETPEGQACGLVKNLALM  I+VGS + P+++FLEEWG E+  E + +  P  TK+
Sbjct: 121  MVCPAETPEGQACGLVKNLALMACISVGSYSAPVIDFLEEWGLESLXENAHSSTP-CTKV 179

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG W+G+HRDP  L K +R+LRR+ D++ EV VVRD+R KELRI+TD GR  RPLFIV
Sbjct: 180  FVNGVWMGVHRDPANLAKXIRKLRRKDDISPEVSVVRDVREKELRIFTDAGRVCRPLFIV 239

Query: 634  EKQRLLIKKRDIIALQQRESPEDGG---WHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 690
            E Q+LL++K+ I  L      +DG    W  L+  G IE +D EEEET MISMT  DL  
Sbjct: 240  ENQQLLLQKKHIQWLNA-GVKDDGSTFQWEQLIKDGIIELLDAEEEETVMISMTPEDLET 298

Query: 691  ARLHP-------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
            +RL         EE +             T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 299  SRLQSSGIETQDEEDFDPAARLKAGINTHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 358

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 359  TYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 418

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
             CYSGYNQEDSVIMNQSSIDRG FRS+F+RSY D EK  G    E F +P R  T+ M+H
Sbjct: 419  LCYSGYNQEDSVIMNQSSIDRGLFRSMFYRSYMDLEKTSGVQQLEQFEKPSRDTTIRMKH 478

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 910
            G+YDKLDDDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G
Sbjct: 479  GTYDKLDDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRNHTRRDVSTPLKSTESG 538

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQVL+TTNADG +FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 539  IVDQVLVTTNADGHKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIV 598

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GY  R
Sbjct: 599  PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSRFLRQKGYHSR 658

Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            G E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 659  GLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 690


>gi|119644095|gb|ABL85606.1| RNA polymerase II second largest subunit [Parmotrema reticulatum]
          Length = 718

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/719 (62%), Positives = 554/719 (77%), Gaps = 43/719 (5%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+
Sbjct: 1    DDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GL+YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATKIFVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  R
Sbjct: 181  NATKIFVNGVWVGVHRDPAHLVGTVQTLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCR 240

Query: 629  PLFIVEK-----------------QRLLIKKRDIIALQQRESPEDG--GWHDLVAKGFIE 669
            PLF+++                  Q+L + +R I  +Q   S E+   GW  LV +G +E
Sbjct: 241  PLFVIDNDPRSSNRGNLVLTKEHVQKLELDER-IGLIQNLTSGEETNMGWQGLVKEGVVE 299

Query: 670  YIDTEEEETTMISMTINDLVQAR----------LHPEE----------AYADTYTHCEIH 709
            Y+D EEEET MI MT  DL  +R           +P+E            A T+THCEIH
Sbjct: 300  YVDAEEEETIMIVMTPEDLEISRQLQAGYAMPEANPDELNKRVKAPMNPTAHTWTHCEIH 359

Query: 710  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
            PS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY+ RMDT+A +LYYPQKPL 
Sbjct: 360  PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLA 419

Query: 770  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 829
            TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK
Sbjct: 420  TTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEK 479

Query: 830  KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EA 888
            ++G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E 
Sbjct: 480  RIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEE 539

Query: 889  QGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
             GQ ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRH
Sbjct: 540  LGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRH 599

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDA
Sbjct: 600  GQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDA 659

Query: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            TPFT+VTVD++S+ L + GYQ RGFE MYNGHTG++L   +FLGPTYYQRL+HMVDDKI
Sbjct: 660  TPFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVTQVFLGPTYYQRLRHMVDDKI 718


>gi|55140711|gb|AAQ01544.3| RNA polymerase II second largest subunit [Phaeomarasmius proximans]
          Length = 687

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/687 (65%), Positives = 541/687 (78%), Gaps = 25/687 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VG+ + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGTISAPVIEFLEEWGLESLEENAHSTTP-FTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRD   LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q
Sbjct: 181  GVWIGVHRDAANLVKTLKKLRRKDDLSPEVSVVRDIREKELRVYTDAGRVCRPLFIVENQ 240

Query: 637  RLLIKKRDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 694
            +L+++K+ I  L    + E     W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241  QLMLQKKHIRWLNNGVNDEGSEFKWEHLIRGGTIELLDAEEEETVMISMTPEDLENSRLQ 300

Query: 695  -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
                                   +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301  QRGIDVPVNDGEYDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361  SAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ ++HG+Y
Sbjct: 421  SGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRENTLRLKHGTY 480

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 913
            DKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VD
Sbjct: 481  DKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVD 540

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QVLLTTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+
Sbjct: 541  QVLLTTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDL 600

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601  IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLE 660

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661  VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|300394674|gb|ADK11875.1| DNA-directed RNA polymerase II subunit two, partial [Amylocorticium
            cebennense]
          Length = 689

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/687 (65%), Positives = 544/687 (79%), Gaps = 26/687 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLK
Sbjct: 4    DHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNVSLAVKHQTITNGLK 63

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 64   YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 123

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 124  WGMVCPAETPEGQACGLVKNLALMACISVGSISAPVIEFLEEWGLESLEENAHSSTP-CT 182

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 183  KVFVNGVWMGVHRDPGNLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 242

Query: 632  IVEKQRLLIKKRDIIALQQ---RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            IVE Q+L+++K+ I  L Q    +  E   W +LV  G IE +D EEEET MI+MT  DL
Sbjct: 243  IVENQQLILQKKHIRWLDQGYTDDVEETFKWDELVKHGIIELLDAEEEETVMIAMTPEDL 302

Query: 689  VQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQS 729
              +RL          +E +           A T+THCEIHPS+ILG+CASIIPFPDHNQS
Sbjct: 303  DNSRLQQGALDLRKLDEEFDPAARLKAGVNAHTWTHCEIHPSMILGICASIIPFPDHNQS 362

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+M +L FR+LPAG NAI
Sbjct: 363  PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMMYLKFRELPAGQNAI 422

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E F +P R NT+ 
Sbjct: 423  VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEQFEKPTRDNTLR 482

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 907
            M+HG+YDK++DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 483  MKHGTYDKIEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 542

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            ETG+VDQVL+TTN++G +FVKVRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 543  ETGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 602

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            GI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++SK L + GY
Sbjct: 603  GIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSKFLLQKGY 662

Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTY 1054
            Q RG E MY+GHTGR+L A I+LGPTY
Sbjct: 663  QSRGMEVMYHGHTGRKLQAQIYLGPTY 689


>gi|354992119|gb|AER45766.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/689 (64%), Positives = 542/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQEKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MIS+T  DL  +R
Sbjct: 241  QLLLRKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISVTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+++GKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIVVGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDK +SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKSASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|354992107|gb|AER45760.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/687 (65%), Positives = 540/687 (78%), Gaps = 25/687 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GL+YSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLEYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+ GS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISDGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQR--ESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 694
            +LL++K+ I  L Q   +  E   W  L+  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241  QLLLQKKHIRWLNQTVDDEGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSRLQ 300

Query: 695  -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
                                   +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301  HAGVDTRVNDGEYDPAARLGASTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361  SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421  SGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTY 480

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 913
            DKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481  DKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PDI
Sbjct: 541  QVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDI 600

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601  IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRGLE 660

Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 661  VMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|300394750|gb|ADK11913.1| DNA-directed RNA polymerase II subunit two, partial [Serpula
            himantioides]
          Length = 685

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/686 (65%), Positives = 540/686 (78%), Gaps = 26/686 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+  KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1    DHFVKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            IVE Q+L ++K+ I  L Q    +DG    W  LV  G IE +D EEEET MISMT  DL
Sbjct: 240  IVENQQLALQKKHIKWLNQGYRDDDGEEYKWEHLVKGGIIELLDAEEEETVMISMTPEDL 299

Query: 689  VQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQS 729
              ++L       H  +   D            T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 300  ENSKLQSAGIDPHTNDGDYDPAARLKAGNNSHTWTHCEIHPSMILGVCASIIPFPDHNQS 359

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360  PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ 
Sbjct: 420  VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLR 479

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 907
            M+HG+YDKL+DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480  MKHGTYDKLEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E G+VDQVL+TTN++G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540  ENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            GI PDI++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600  GIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPT 1053
            Q RG E MY+GHTGR+L A ++LGPT
Sbjct: 660  QSRGLEVMYHGHTGRKLQAQVYLGPT 685


>gi|396941937|gb|AFN89685.1| RNA polymerase II, partial [cf. Ascoidea sp. NRRL Y-6762]
          Length = 705

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/705 (62%), Positives = 556/705 (78%), Gaps = 31/705 (4%)

Query: 306 ELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCE 365
           E+L+P +EEAFVIQ+++VALD+IG+RG+   + ++KRI+YA++ILQKE+LPH+   +  E
Sbjct: 1   EMLKPCVEEAFVIQDREVALDFIGRRGSAQNIRKEKRIQYARDILQKELLPHITQQEGFE 60

Query: 366 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 425
           ++KA++ GY+IHRLLLCAL R+ +DDRDH+G KRLDLAGPLL  LFR+LF+KL++D+  Y
Sbjct: 61  SRKAFFLGYMIHRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRILFKKLSKDIFRY 120

Query: 426 VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAST 484
           +QKCV+  KD NL  A+K+ TITSGLKYSLATGNWG Q  A  +RAGVSQVLNR TY+ST
Sbjct: 121 MQKCVETNKDFNLTLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 180

Query: 485 LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
           LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM  I+VGS +
Sbjct: 181 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPS 240

Query: 545 YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNT 604
            PI  FLEEWG E  E+  P   P AT+IFVNG W+GIHR P  LV+T+R LRR+ D++ 
Sbjct: 241 DPISYFLEEWGMEPLEDYVPHAAPDATRIFVNGVWIGIHRSPTALVETMRSLRRKGDISP 300

Query: 605 EVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRE--SPE 655
           EV ++RDIR KE RI+TD GR  RPLF+V+       K  L ++K  +  L   E    E
Sbjct: 301 EVSIIRDIREKEFRIFTDAGRVFRPLFVVDNDESSDRKGELKLQKEHVHRLTNSEYNGDE 360

Query: 656 DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR------------LHPEE----AY 699
           + GW  LVA G IEYID EEEET MI+MT  DL  +R            + P +    AY
Sbjct: 361 EYGWTSLVADGVIEYIDAEEEETVMIAMTPEDLEMSRQMQAGADIQDDEIDPAKRVKPAY 420

Query: 700 ---ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 756
              A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT
Sbjct: 421 NPSAHTWTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDT 480

Query: 757 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 816
           +A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG F
Sbjct: 481 MANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLF 540

Query: 817 RSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 876
           RSLFFRSY D+E+++G  V E+F +P RSNT+ ++HG+Y+KLD+DGL  PG RVSGED+I
Sbjct: 541 RSLFFRSYMDQERRVGMSVVEEFEKPLRSNTLRLKHGTYEKLDEDGLIAPGVRVSGEDII 600

Query: 877 IGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 934
           IGKTTPI  D A+ GQ +++ T+RD S  LR +E G+VDQVLLTTN +GL+FVKVR+R+ 
Sbjct: 601 IGKTTPIPPDNAELGQRTKFHTKRDASTPLRSTENGIVDQVLLTTNQEGLKFVKVRMRTT 660

Query: 935 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
           ++PQIGDKF+SRHGQKGT+G+TY  ED+P++ EGI PD+++NPHA
Sbjct: 661 KVPQIGDKFASRHGQKGTIGVTYRHEDVPFSAEGICPDLVINPHA 705


>gi|52699770|gb|AAU86947.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            canadensis]
          Length = 713

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/711 (63%), Positives = 545/711 (76%), Gaps = 38/711 (5%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G  RLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSL
Sbjct: 3    GKXRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSL 62

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 63   ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 122

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+F
Sbjct: 123  VCPAETPEGQACGLVKNLALMCYITVGTPSQPIVDFMIQRNMEVLEEYEPQRSPNATKVF 182

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG WVG+HRDP  LV T+  LRR   ++ EV +VRDIR +E +I+TD GR  RPLF++ 
Sbjct: 183  VNGVWVGVHRDPAHLVSTVLALRRANAISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIN 242

Query: 635  KQ-------RLLIKKRDIIALQQ-RESPED--------GGWHDLVAKGFIEYIDTEEEET 678
                      L++ K DI  L+  ++ PED         GW+ L+ KG +EY+D EEEET
Sbjct: 243  NDPRSTNCGNLVLTKPDIHKLEDDKDLPEDYEIDEKNPPGWNGLIKKGIVEYVDAEEEET 302

Query: 679  TMISMTINDL-----VQARLH--------------PEEAYADTYTHCEIHPSLILGVCAS 719
             MI MT  DL     +QA  H              P    A T+THCEIHPS+ILG+CAS
Sbjct: 303  VMIVMTPEDLEISRQLQAGYHLPDTSDDLIKRVKAPMNPTAHTWTHCEIHPSMILGICAS 362

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMG QAMG+ +TNY  RMDT+A +LYYPQKPL TTR+ME L F
Sbjct: 363  IIPFPDHNQSPRNTYQSAMGXQAMGVXLTNYDQRMDTMANILYYPQKPLATTRSMEFLKF 422

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F
Sbjct: 423  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 482

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 897
             +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +
Sbjct: 483  EKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVK 542

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY
Sbjct: 543  RDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 602

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1017
             QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD+
Sbjct: 603  RQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDS 662

Query: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            +SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI +
Sbjct: 663  VSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 713


>gi|300394684|gb|ADK11880.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
            arida]
          Length = 687

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/688 (65%), Positives = 542/688 (78%), Gaps = 27/688 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSST-VCT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 687
            IVE Q+LL++K+ I  L Q     +  E+  W  LV  G IE +D EEEET MISMT  D
Sbjct: 240  IVENQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQLVKGGVIELLDAEEEETVMISMTPED 299

Query: 688  LVQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            L  +RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 300  LENSRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQ 359

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360  SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 419

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420  IVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTL 479

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 906
             M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ 
Sbjct: 480  RMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKS 539

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540  TENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + G
Sbjct: 600  EGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKG 659

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTY 1054
            YQ RG E MY+GHTGR+L A ++LGPTY
Sbjct: 660  YQSRGLEVMYHGHTGRKLQAQVYLGPTY 687


>gi|56694286|gb|AAW22883.1| RNA polymerase II second largest subunit [Botrychium virginianum]
          Length = 488

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/489 (89%), Positives = 463/489 (94%), Gaps = 1/489 (0%)

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
            QATKIFVNGCWVGIHRDPE+LV+TLR+LRR+VDVNTEVGVVRDIRLKELR+YTDYGRCSR
Sbjct: 1    QATKIFVNGCWVGIHRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSR 60

Query: 629  PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            PLFIVE QRLLIKK DI ALQQ+ES E  GW+DLVAKGFIEY+DTEEEETTMISMTI+DL
Sbjct: 61   PLFIVENQRLLIKKSDIRALQQKESTE-SGWYDLVAKGFIEYVDTEEEETTMISMTISDL 119

Query: 689  VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
            V AR HPEEAY+DTYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT
Sbjct: 120  VNARNHPEEAYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 179

Query: 749  NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
            NYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA+VAIACYSGYNQEDSVIMNQ
Sbjct: 180  NYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQ 239

Query: 809  SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
            SSIDRGFFRS+F+RSYRDEEKK GTLVKE+F RP+R  T GMRHGSYDKLDDDGLAPPGT
Sbjct: 240  SSIDRGFFRSIFYRSYRDEEKKQGTLVKEEFERPNRETTTGMRHGSYDKLDDDGLAPPGT 299

Query: 869  RVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 928
            RVSGEDVIIGKTTP+ QD++  QA R+T+RD    LRHSE+GMVDQVLLTTNADGLRFVK
Sbjct: 300  RVSGEDVIIGKTTPVPQDDSGTQAQRFTKRDQXTCLRHSESGMVDQVLLTTNADGLRFVK 359

Query: 929  VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
            VR+R +R+PQIGDKFS RHGQKGTVGMTYTQEDMPWT EGITPDIIVNPHAIPSRMTIGQ
Sbjct: 360  VRMRXIRVPQIGDKFSXRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQ 419

Query: 989  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 1048
            LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRGFETMYNGHTGRRL AMI
Sbjct: 420  LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRGFETMYNGHTGRRLNAMI 479

Query: 1049 FLGPTYYQR 1057
            FLGPTYYQR
Sbjct: 480  FLGPTYYQR 488


>gi|52699866|gb|AAU86994.1| DNA-dependent RNA polymerase II second largest subunit [Rhizocarpon
            disporum]
          Length = 716

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/717 (62%), Positives = 551/717 (76%), Gaps = 46/717 (6%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH G KRLDLAGPLL GLFR LF+KLT+DV  Y+QKCV+  ++ NL   +K+ T+TSGLK
Sbjct: 1    DHXGKKRLDLAGPLLAGLFRTLFKKLTKDVFKYLQKCVEQNREFNLTLGVKSTTLTSGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACG+VKNLALM YITVG+ + PI++F+ +   +  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGVVKNLALMCYITVGTPSEPIIDFMVQRSMDLLEEYEPQSYPNAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181  KIFVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVE-------KQRLLIKKRDIIALQQRE------SPEDG-----GWHDLVAKGFIEYIDT 673
            +++       +  L++ K+ I  L++         PE+      GW  LV +G +EY+D 
Sbjct: 241  VIDNDPRSPNRGSLVLTKQHIQKLEEDHEIGADMDPEERESKFMGWEGLVNQGVVEYVDA 300

Query: 674  EEEETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPS 711
            EEEET MI MT  DL                      V+A ++P    A T+THCEIHPS
Sbjct: 301  EEEETVMIVMTPADLEISRQLQQGYTLPETSDDPNRRVKAPMNPT---AHTWTHCEIHPS 357

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TT
Sbjct: 358  MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATT 417

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            R+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSS+DRG FRSLF+R+Y D+EK++
Sbjct: 418  RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSVDRGLFRSLFYRAYTDQEKRV 477

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 890
            GT V E F +P RS+T+ ++HG+YDKLDDDG+  PG R+SGED+IIGKT PI+ D E  G
Sbjct: 478  GTSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRISGEDIIIGKTAPIAPDAEELG 537

Query: 891  QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            Q ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQ
Sbjct: 538  QRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQ 597

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATP
Sbjct: 598  KGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATP 657

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            FTDVTVD++S  L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV  KI
Sbjct: 658  FTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVXXKI 714


>gi|88976144|gb|ABD59037.1| RNA polymerase II second largest subunit, partial [Inocybe cookei]
          Length = 688

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/689 (64%), Positives = 543/689 (78%), Gaps = 25/689 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMACISVGSFSGPVIEFLEEWGLESLEENAHSSTA-FTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRD   LVKTL+RLRRR D++TE+  VRDIR +E+R+YTD GR  RPLFIVE
Sbjct: 180  VNGVWIGVHRDAANLVKTLKRLRRRDDISTEISXVRDIREREMRVYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
             Q+L+++K+ +  L     +  ++  W  ++  G IE +D+EEEET MISMT  DL  +R
Sbjct: 240  DQQLVLQKKHVRWLNSGVDDEGQEFKWEQMIKGGIIELLDSEEEETVMISMTPEDLENSR 299

Query: 693  L-------HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L       H  +             +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 300  LQQRGIDPHANDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 359

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 360  YQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 419

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG
Sbjct: 420  CYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHG 479

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL+DDG   PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G 
Sbjct: 480  TYDKLEDDGFIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGS 539

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN++G +FVKVRVRS+RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 540  VDQVLITTNSEGQKFVKVRVRSIRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVP 599

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            D+I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 600  DLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQRGYQSRG 659

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 660  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 688


>gi|109289351|gb|ABG29164.1| RNA polymerase II second largest subunit, partial [Entyloma
            arnoseridis]
          Length = 695

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/696 (64%), Positives = 545/696 (78%), Gaps = 27/696 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL GLFRMLF+KLTRD+  +++KCV++ K+  +  A+K+ TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLSGLFRMLFKKLTRDIYRHLEKCVEDQKEFFINTAVKSATITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q      +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNL+LM  I+VGS + PI+EFLEE+G +   ++      ++T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLSLMSLISVGSQSQPIIEFLEEFGLDQLTDMRRE-DARST 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G H+DP  LV TLR LRR+ D++TEV VV DIR KELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWLGTHQDPTGLVSTLRGLRRKDDISTEVSVVHDIREKELRLYTDAGRVMRPLF 239

Query: 632  IVEK--QRLLIKKRDIIALQQ-RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            IV K  + L IK++ +  LQ   E   D GW DLV  G IEY+D EEEET MISM+I DL
Sbjct: 240  IVNKDDRSLFIKRKHMNWLQHGTEDGSDFGWEDLVQCGVIEYLDAEEEETVMISMSIEDL 299

Query: 689  -------------------VQARLHPEEAYA-DTYTHCEIHPSLILGVCASIIPFPDHNQ 728
                                 ARL     Y+ DT+THCEIHP++ILG+CASIIPFPDHNQ
Sbjct: 300  NYSRAYHQNTNSVRDTLSDPSARLVSLHTYSGDTWTHCEIHPAMILGICASIIPFPDHNQ 359

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMG+Y+TNYQ RMDT+A +LYYPQKPL TTRAM+HL FR+LPAG NA
Sbjct: 360  SPRNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLGTTRAMQHLKFRELPAGQNA 419

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAI CYSGYNQEDSVIMNQSSIDRG FRSL++R+Y D EKK G +  E F +P R  T+
Sbjct: 420  IVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYTDLEKKSGMVEMEVFEKPSRETTI 479

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 906
             ++HG+YDKLD DGL  PGTRVSGED+IIGKT P+  D E  G  S+ +T+RD S+ L+ 
Sbjct: 480  RLKHGTYDKLDADGLCAPGTRVSGEDIIIGKTVPLPCDSEELGLRSKLHTKRDASMPLKS 539

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E+G+VDQVL+TTN DG++FVKVRVRS R+PQ GDKF+SRHGQKGT+G+TY QEDMP+TV
Sbjct: 540  TESGIVDQVLVTTNGDGVKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITYRQEDMPFTV 599

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EG+TPDII+NPHAIPSRMTIG L+EC++ KVA   G+EGDATPFT +TV+ +S  L   G
Sbjct: 600  EGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDATPFTSLTVEAVSNVLKGFG 659

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            YQ RG E MYNGHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660  YQSRGLEIMYNGHTGRKLQAQVYLGPTYYQRLKHMV 695


>gi|52699778|gb|AAU86951.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            laqueata]
          Length = 711

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/711 (63%), Positives = 545/711 (76%), Gaps = 38/711 (5%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            D  G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLK
Sbjct: 1    DXXGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGVSQVLNR  +ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASSKAGVSQVLNRYAFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCYITVGTPSQPIIDFMIQRNMEVLEEYEPQRSPNAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG+HRDP  LV T+  LRR+  ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181  KVFVNGVWVGVHRDPAHLVSTVLALRRQDAISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVEKQ-------RLLIKKRDIIALQQ-RESPED--------GGWHDLVAKGFIEYIDTEE 675
            +++          L++ K DI  L+  ++ P D         GW+ LV +G +EY+D EE
Sbjct: 241  VIDNDPRSPNCGNLVLTKSDIQKLEDDKDLPPDYEIDEKNPPGWNGLVKRGVVEYVDAEE 300

Query: 676  EETTMISMTINDL-----VQARLH--------------PEEAYADTYTHCEIHPSLILGV 716
            EET MI MT  DL     +QA  H              P    A T+THCEIHPS+ILG+
Sbjct: 301  EETVMIVMTPEDLEISRQLQAGYHLPETSDDLNKRVKAPMNPTAHTWTHCEIHPSMILGI 360

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMG QAMG+ + NY  RMDT+A +LYYPQKPL TTR+ME 
Sbjct: 361  CASIIPFPDHNQSPRNTYQSAMGXQAMGVXLXNYDQRMDTMANILYYPQKPLATTRSMEF 420

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V 
Sbjct: 421  LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVV 480

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 894
            E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ 
Sbjct: 481  EQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKL 540

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 541  HVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 600

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 601  ITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 660

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            VD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 661  VDSVSKLLREHGYQSRGFEAMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 711


>gi|52699818|gb|AAU86971.1| DNA-dependent RNA polymerase II second largest subunit [Gyalecta
            ulmi]
          Length = 711

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/711 (62%), Positives = 555/711 (78%), Gaps = 40/711 (5%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPL+ GLFRMLF KLT+DV  Y+QKCV++GK+ NL   +K+ T+T+GLKYSLAT
Sbjct: 1    KRLDLAGPLMAGLFRMLFNKLTKDVYKYLQKCVESGKEFNLTLGVKSTTLTNGLKYSLAT 60

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 61   GNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 120

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YITVGS + PI+EF+ +   E  EE  P   P +TK+FVN
Sbjct: 121  PAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMVQRNMEVLEEYEPTRNPHSTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVG+HRDP  LV T++ LRR+  +++EV ++RDIR +E +I+TD GR  RPLF++E  
Sbjct: 181  GVWVGVHRDPAHLVSTVQSLRRQNMISSEVSLIRDIRDREFKIFTDAGRVCRPLFVIEND 240

Query: 637  R-------LLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDTEEEET 678
            +       L++ K  +  L+  R+ P D           GW  L+A G +E++D EEEET
Sbjct: 241  KKSPNKGALVLTKELVRKLEDDRDLPPDMDPDEKKEKYFGWAGLLANGAVEFLDAEEEET 300

Query: 679  TMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCAS 719
             MI+MT  DL     VQA   P E  +D              T+THCEIHPS+ILG+CAS
Sbjct: 301  VMIAMTPEDLDISRQVQAGFAPPEPSSDPNARVKAPVSANQHTWTHCEIHPSMILGICAS 360

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L F
Sbjct: 361  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEFLKF 420

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAG NAIVAIACYSGYNQEDSVIM+QSSIDRG FRSLF+RSY ++EK++G  + E F
Sbjct: 421  RELPAGQNAIVAIACYSGYNQEDSVIMSQSSIDRGLFRSLFYRSYVEQEKRVGMSLVEQF 480

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 897
             +P RS T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ +T+
Sbjct: 481  EKPLRSETLRVKHGTYEKLDDDGIIAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHTK 540

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR +E+G+VD+VLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY
Sbjct: 541  RDASTPLRTTESGIVDRVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 600

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1017
             QEDMP++ EGITPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD+
Sbjct: 601  RQEDMPFSREGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDS 660

Query: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            +S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI +
Sbjct: 661  VSRLLREHGYQSRGFEMMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIXA 711


>gi|113957144|gb|ABI49101.1| RNA polymerase II second largest subunit [Pseudocyphellaria anomala]
          Length = 715

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/718 (62%), Positives = 552/718 (76%), Gaps = 49/718 (6%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+  ++ NL   +K+ T+T+GLKYS
Sbjct: 1    FGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVEGNREFNLTLGVKSTTLTNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+
Sbjct: 121  LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNATKV 180

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181  FVNGVWVGVHRDPAHLVSTVQTLRRRHWISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 634  E-------KQRLLIKKRDIIALQQRE--SPE---DG--------GWHDLVAKGFIEYIDT 673
            +       +  L++ K  +  L+  +   PE   +G        GW  LV +G +EY+D 
Sbjct: 241  DNDPKSPNRGNLVLTKEHVNKLEDDKELGPELDAEGREKEDKFRGWKGLVNQGVVEYVDA 300

Query: 674  EEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCEIHP 710
            EEEET MI MT  DL                       V+A L+P    A T+THCEIHP
Sbjct: 301  EEEETVMIVMTPEDLEISRQIQAGYVMPEPSIDDPNKRVKAPLNPT---AHTWTHCEIHP 357

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL T
Sbjct: 358  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLAT 417

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK+
Sbjct: 418  TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKR 477

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
            +G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  
Sbjct: 478  IGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEEL 537

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 538  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 597

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDAT
Sbjct: 598  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 657

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            PFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 658  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 715


>gi|94410922|gb|ABF18580.1| RNA polymerase II second largest subunit, partial [Hygrophorus
            auratocephalus]
          Length = 701

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/702 (64%), Positives = 545/702 (77%), Gaps = 36/702 (5%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV++ K+ NL  A+K +TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLALAVKHQTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM  I+VGS + PI+EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMACISVGSYSAPIIEFLEEWGMESLEENAHSSTP-CTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+GIHR+   L+ T+ +LRR+ D++ EV VVRDIR ++LR+YTD GR  RPLFIV 
Sbjct: 180  VNGVWMGIHRNAAHLIDTIVKLRRKDDISPEVSVVRDIRERKLRLYTDPGRVYRPLFIVN 239

Query: 635  KQRLLIKKRDIIALQQ-------------RESPEDGGWHDLVAKGFIEYIDTEEEETTMI 681
             Q+L+++K+ I  L +             +  P    W  LV +G IE +D EEEET MI
Sbjct: 240  NQQLVLQKKHIRWLNRGYGDKLEFNEKTGKMEPVKFKWESLVKEGIIELLDAEEEETVMI 299

Query: 682  SMTINDLVQARL-------HPEEA------------YADTYTHCEIHPSLILGVCASIIP 722
            SMT  DL  +RL       H  ++             A T+THCEIHPS+ILG+CASIIP
Sbjct: 300  SMTPEDLENSRLQQSGVDPHSNDSDFDPAQRLKAGVNAHTWTHCEIHPSMILGICASIIP 359

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+L
Sbjct: 360  FPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFREL 419

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAG N IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P
Sbjct: 420  PAGQNTIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 479

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 900
             R NT+ M+HG+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD 
Sbjct: 480  TRENTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRSHTRRDV 539

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  ++ +E+G+VDQVL+TTN++G +FVKVRVRS R+PQIGDKF+SRHGQKGT+G+TY QE
Sbjct: 540  STPMKSTESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITYRQE 599

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
            DMP+T EGI PDII+NPHAIPSRMTIG LIEC++ KVA  +G EGDATPFTD+TV+++S 
Sbjct: 600  DMPFTAEGIVPDIIINPHAIPSRMTIGHLIECLLSKVATLIGNEGDATPFTDLTVESVST 659

Query: 1021 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             L + GYQ RG E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660  FLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 701


>gi|300394756|gb|ADK11916.1| DNA-directed RNA polymerase II subunit two, partial [Serpula
            himantioides]
          Length = 682

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/683 (65%), Positives = 538/683 (78%), Gaps = 26/683 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            IVE Q+L ++K+ I  L Q    +DG    W  LV  G IE +D EEEET MISMT  DL
Sbjct: 240  IVENQQLALQKKHIKWLNQGYRDDDGEEYKWEHLVKGGIIELLDAEEEETVMISMTPEDL 299

Query: 689  VQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQS 729
              +RL       H  +   D            T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 300  ENSRLQSAGIDPHTNDGDYDPAARLKAGNNSHTWTHCEIHPSMILGVCASIIPFPDHNQS 359

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360  PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ 
Sbjct: 420  VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLR 479

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 907
            M+HG+YDKL+DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480  MKHGTYDKLEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E G+VDQVL+TTN++G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540  ENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            GI PDI++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600  GIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 1028 QMRGFETMYNGHTGRRLTAMIFL 1050
            Q RG E MY+GHTGR+L A ++L
Sbjct: 660  QSRGLEVMYHGHTGRKLQAQVYL 682


>gi|52699806|gb|AAU86965.1| DNA-dependent RNA polymerase II second largest subunit [Coenogonium
            luteum]
          Length = 714

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/712 (62%), Positives = 552/712 (77%), Gaps = 40/712 (5%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPL+ GLFR LF KLT+DV  Y+QKCV+ GK+ NL   +K+ TIT+GLKYS
Sbjct: 1    FGKKRLDLAGPLMAGLFRQLFSKLTKDVSKYLQKCVEGGKEFNLTLGVKSTTITNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA ++AGV+QVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGEQKKAASSKAGVAQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNLALM YITVGS + PI+EF+ +   +  EE  P   P ATK+
Sbjct: 121  LVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMVQRQMDVLEEYEPTRSPHATKV 180

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVG+HRD   LV T++ LRRR  +++EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181  FVNGVWVGVHRDSGHLVSTVQSLRRRNMISSEVTLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 634  E-------KQRLLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEYIDTEE 675
            +       K  L++ K  +  L+  RE P D           GW+ L+  G +E++D EE
Sbjct: 241  DNDPKSSNKGSLVMTKEMVNKLEDDREIPADLDPEEKKKRHFGWNGLLVNGAVEFLDAEE 300

Query: 676  EETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGV 716
            EET MI+M+  DL     VQA   P E  AD              T+THCEIHPS+ILGV
Sbjct: 301  EETVMIAMSPEDLEISRMVQAGYAPPEPSADPNARVKAPVKAIQQTWTHCEIHPSMILGV 360

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME+
Sbjct: 361  CASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEY 420

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY ++EK +G  V 
Sbjct: 421  LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYVEQEKHLGMEVV 480

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQASR- 894
            E F +P RS T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT P+ S DE  GQ ++ 
Sbjct: 481  EQFEKPLRSETLRLKHGTYDKLDDDGIIAPGIRVSGEDIIIGKTAPMRSNDEELGQRTKL 540

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            +T+RD S +LR +E+G+VD+VL+TTNA+GL+FVKVR R+ ++PQIGDKF+SRHGQKGT+G
Sbjct: 541  HTKRDASTALRSTESGLVDKVLITTNAEGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIG 600

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP++ +GI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 601  ITYRQEDMPFSAQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 660

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            VD++S+ L + GYQ RGFE MYNGHTG++L A +F GPTYYQRL+HMVDDKI
Sbjct: 661  VDSVSRLLREHGYQSRGFEIMYNGHTGKKLVAQVFFGPTYYQRLRHMVDDKI 712


>gi|354992131|gb|AER45772.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/689 (65%), Positives = 540/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLTLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQA GLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + +P  TK+FVN
Sbjct: 122  PAETPEGQAGGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSVP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ I  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHIRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+THCEIHPS+ILG+CASIIP PDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHCEIHPSMILGICASIIPLPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIG+T PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGETAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN  G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHQGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQEGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|70794978|gb|AAZ08463.1| RNA polymerase II second largest subunit [Liquidambar acalycina]
          Length = 453

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/453 (97%), Positives = 449/453 (99%)

Query: 108 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
           ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 60

Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
           YCTL+QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61  YCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
            EVRSMAESQNRPPS+MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121 GEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288 DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
           DKDILEHICYDF DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVT++KRIKYAK
Sbjct: 181 DKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAK 240

Query: 348 EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
           EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCALGRRAEDDR HYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRAHYGNKRLDLAGPLL 300

Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
           GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
           TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 420

Query: 528 LVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
           LVKNLALMVYITVGSAAYPILEFLEEWGTENFE
Sbjct: 421 LVKNLALMVYITVGSAAYPILEFLEEWGTENFE 453


>gi|52699860|gb|AAU86991.1| DNA-dependent RNA polymerase II second largest subunit [Porpidia
            albocaerulescens]
          Length = 715

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/716 (62%), Positives = 548/716 (76%), Gaps = 47/716 (6%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KR DLAGPLL GLFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ T+T+GLKYS
Sbjct: 1    FGKKRXDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTLTNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+
Sbjct: 121  LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNATKV 180

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181  FVNGVWVGVHRDPAHLVSTVQNLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 634  E-------KQRLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEE 675
            +       +  L++ K         R+IIA    E  E    GW  LV +G +EY+D EE
Sbjct: 241  DNDPKSSNRGNLVLTKEHVQKLEEDREIIASTDPEEREAKLMGWEGLVNQGVVEYVDAEE 300

Query: 676  EETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCEIHPSL 712
            EET MI MT  DL                       V+A L+P    A T+THCEIHPS+
Sbjct: 301  EETVMIVMTPEDLEISRQIQAGFVLPEPSIDDPNKRVKAPLNPT---AHTWTHCEIHPSM 357

Query: 713  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 772
            ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR
Sbjct: 358  ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTR 417

Query: 773  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 832
            +ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G
Sbjct: 418  SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIG 477

Query: 833  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQG 890
              V E+F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D  E   
Sbjct: 478  MNVVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGL 537

Query: 891  QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
            +   + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQK
Sbjct: 538  RTKLHMKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQK 597

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GT+G+TY QEDMP++ EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPF
Sbjct: 598  GTIGITYRQEDMPFSSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPF 657

Query: 1011 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            T+VTVD++S+ L + GYQ RGFE MYNGHTG++L A +FLGPTYYQRL+HMVD KI
Sbjct: 658  TEVTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVAQVFLGPTYYQRLRHMVDXKI 713


>gi|300394692|gb|ADK11884.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora arida
            var. suffocata]
          Length = 686

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/687 (65%), Positives = 540/687 (78%), Gaps = 27/687 (3%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+
Sbjct: 1    DDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +   
Sbjct: 121  NTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSST- 179

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
              TK+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  R
Sbjct: 180  VCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCR 239

Query: 629  PLFIVEKQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMT 684
            PLFIVE Q+LL++K+ I  L Q     +  E+  W  LV  G IE +D EEEET MISMT
Sbjct: 240  PLFIVENQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQLVKGGVIELLDAEEEETVMISMT 299

Query: 685  INDLVQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPD 725
              DL   RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPD
Sbjct: 300  PEDLENCRLQSAGIDTRQSDEDYDLAARLKSGINAHTWTHCEIHPSMILGICASIIPFPD 359

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG
Sbjct: 360  HNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAG 419

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
             NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R 
Sbjct: 420  QNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRD 479

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSIS 903
             T+ M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  
Sbjct: 480  TTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDGSTP 539

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
            L+ +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP
Sbjct: 540  LKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMP 599

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023
            +T EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L 
Sbjct: 600  FTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLR 659

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFL 1050
            + GYQ RG E MY+GHTGR+L A ++L
Sbjct: 660  QKGYQSRGLEVMYHGHTGRKLQAQVYL 686


>gi|103001877|gb|ABF71525.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            flavum]
          Length = 714

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/711 (63%), Positives = 545/711 (76%), Gaps = 40/711 (5%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSL
Sbjct: 2    GKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSL 61

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 62   ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 121

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+F
Sbjct: 122  VCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVF 181

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++
Sbjct: 182  VNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVID 241

Query: 635  KQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEE 676
                      L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEE
Sbjct: 242  NDPKSTNCGNLVLTKEHINKLEDDRDLPAIIDSEEKEAKFFGWDGLVNNGVVEYVDAEEE 301

Query: 677  ETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVC 717
            ET MI MT  DL     +QA     EA  D              T+THCEIHPS+ILG+C
Sbjct: 302  ETVMIVMTPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGIC 361

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRNTYQSAMG QAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L
Sbjct: 362  ASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFL 421

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
             FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E
Sbjct: 422  KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVE 481

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 895
             F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ +
Sbjct: 482  QFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLH 541

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
             +RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 542  VKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 601

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1015
            TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV
Sbjct: 602  TYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTV 661

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            D++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV  KI
Sbjct: 662  DSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVXXKI 712


>gi|52699884|gb|AAU87003.1| DNA-dependent RNA polymerase II second largest subunit [Stereocaulon
            paschale]
          Length = 717

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/717 (61%), Positives = 552/717 (76%), Gaps = 41/717 (5%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+N KD N+  A+K+ T+T+GL+
Sbjct: 1    DHFGKKRLDLAGPLLAGLFRMLFHKLTKDVYKYLQKCVENNKDFNMALAVKSTTLTNGLR 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLNSPNAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNG WVG+HRDP  LV T++ LRR+ +++ EV ++RDIR +E +I+TD GR  RPLF
Sbjct: 181  KIFVNGVWVGVHRDPAHLVGTVQNLRRKGNISYEVSLIRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVEKQ-------RLLIKKRDIIALQQ-RE-----SPEDG-----GWHDLVAKGFIEYIDT 673
            +++          L++ K+ +  L++ RE      PE+      GW  L+  G +EY+D 
Sbjct: 241  VIDNDPRSSNCGNLVLTKQLVAQLEEDREYGATLDPEEKEKANIGWQRLLRSGVVEYVDA 300

Query: 674  EEEETTMISMTINDLVQAR-------LHPEEA-------------YADTYTHCEIHPSLI 713
            EEEET MI MT  DL  +R       + P +               A T+THCEIHPS+I
Sbjct: 301  EEEETIMIVMTPEDLEMSRQLEAGFSMPPADPDDLNKRVKATPNPTARTWTHCEIHPSMI 360

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LG+CASIIPFPDHNQSPRNTYQSAMG    G+++TNY  RMDT+A +LYYPQKPL TTR+
Sbjct: 361  LGICASIIPFPDHNQSPRNTYQSAMGXXXXGVFLTNYDVRMDTMANILYYPQKPLATTRS 420

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G 
Sbjct: 421  MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGM 480

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 892
             + E+F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 481  ALVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQR 540

Query: 893  SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
            ++ + +RD S  LR +E G+VDQVLL+TNADGLRF KVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 541  TKLHVKRDASTPLRSTENGIVDQVLLSTNADGLRFAKVRMRTTKIPQIGDKFASRHGQKG 600

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 601  TIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 660

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            +VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI +
Sbjct: 661  EVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 717


>gi|119644344|gb|ABL85619.1| RNA polymerase II second largest subunit [Xanthoria elegans]
          Length = 718

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/721 (61%), Positives = 549/721 (76%), Gaps = 47/721 (6%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL GLFRMLF+KLT+D+  Y+QKCV++ ++ NL   +K  T++S
Sbjct: 1    DDRDHFGKKRLDLAGPLLAGLFRMLFQKLTKDIYKYLQKCVESNREFNLTLGVKQNTLSS 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM YI+VG+ A PI+++L   G E+ EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCYISVGTPADPIVDYLTNRGMESLEEYEPTRAP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATK+FVNG W+G H DP  LV  ++ +RR+  +  E  +VRDIR +E +I+TD GR  R
Sbjct: 181  HATKVFVNGTWIGCHNDPAHLVPHIQEVRRKGIIAHEASLVRDIRDREFKIFTDAGRVCR 240

Query: 629  PLFIVEK-----------------QRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEY 670
            PLF+++                  Q+L  ++  ++ +   E  E   GW  LV  G +EY
Sbjct: 241  PLFVIDNDPKSENMGNLALTKDMVQKLEDERDMVLTMDPEERAEQVIGWEALVDSGAVEY 300

Query: 671  IDTEEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCE 707
            +D EEEET MI+MT  DL                       V+A L+P    A T+THCE
Sbjct: 301  VDAEEEETIMIAMTPEDLEISRQIQAGYAAPVPSEDAPNQRVKAPLNPT---AHTWTHCE 357

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKP
Sbjct: 358  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKP 417

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D 
Sbjct: 418  LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDT 477

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 886
            EK++G  V E F +P R+ T+ ++HG+YDKLDDDGL  PG RVSGEDVIIGKTTPI+ D 
Sbjct: 478  EKRVGMTVLEKFEKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTPIAPDA 537

Query: 887  EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
            +  GQ ++ + ++D S  LR +E G+VD+VLL+TN++GL+FVKVR+R+ +IPQIGDKF+S
Sbjct: 538  QEMGQRTKSHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFAS 597

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EG
Sbjct: 598  RHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEG 657

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 658  DATPFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 717

Query: 1066 I 1066
            I
Sbjct: 718  I 718


>gi|52699833|gb|AAU86978.1| DNA-dependent RNA polymerase II second largest subunit [Lobaria
            quercizans]
          Length = 717

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/720 (62%), Positives = 548/720 (76%), Gaps = 47/720 (6%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+  ++ NL   +K+ T+T+GLK
Sbjct: 1    DHXGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVEGNREFNLTLGVKSTTLTNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181  KVFVNGVWVGVHRDPAHLVSTVQSLRRRHWISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVE-------KQRLLIKKRDIIALQQR---------ESPEDG--GWHDLVAKGFIEYIDT 673
            +++       +  L++ K  +  L+           E  ED   GW  LV +G +EY+D 
Sbjct: 241  VIDNDPKSPNRGNLVLTKEHVNKLEDDKELGPDTDPEGREDKFRGWKGLVNQGVVEYVDA 300

Query: 674  EEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCEIHP 710
            EEEET MI MT  DL                       V+A L+P    A T+THCEIHP
Sbjct: 301  EEEETVMIVMTPEDLEISRQIQAGYVMPEPSIDDPNKRVKAPLNPT---AHTWTHCEIHP 357

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRNTYQSAMG QAMG    NY  RMDT+A +LYYPQKPL T
Sbjct: 358  SMILGICASIIPFPDHNQSPRNTYQSAMGXQAMGXXXXNYDQRMDTMANILYYPQKPLAT 417

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK+
Sbjct: 418  TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKR 477

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
            +G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  
Sbjct: 478  IGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEEL 537

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 538  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 597

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDAT
Sbjct: 598  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 657

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            PFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKIH+
Sbjct: 658  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLHAQVFLGPTYYQRLRHMVDDKIHA 717


>gi|103001231|gb|ABF71498.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            scabrida]
          Length = 713

 Score =  928 bits (2399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/714 (62%), Positives = 545/714 (76%), Gaps = 46/714 (6%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 61   ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVF 180

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++
Sbjct: 181  VNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVID 240

Query: 635  KQ-------RLLIKKRDIIALQ-----------QRESPEDGGWHDLVAKGFIEYIDTEEE 676
                      L + K  I  L+           + +  +  GW  LV  G +EY+D EEE
Sbjct: 241  NDPKSTHCGNLALTKEHINKLEDDKDLPATMDTEEKDAKFFGWDGLVNNGVVEYVDAEEE 300

Query: 677  ETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSLIL 714
            ET MI MT  DL                      V+A ++P    A T+THCEIHPS+IL
Sbjct: 301  ETVMIVMTPEDLEISRQIQAGYTIPETSDDLNKRVKAPMNPT---AHTWTHCEIHPSMIL 357

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            G+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+M
Sbjct: 358  GICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSM 417

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  
Sbjct: 418  EFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMS 477

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 893
            V E F +P RS+T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT PI+ D E  GQ +
Sbjct: 478  VVEQFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRT 537

Query: 894  R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
            + + +RD S  LR +E G+VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT
Sbjct: 538  KLHVKRDVSTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGT 597

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            +G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+
Sbjct: 598  IGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTE 657

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            VTVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI
Sbjct: 658  VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKI 711


>gi|300394694|gb|ADK11885.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
            marmorata]
          Length = 686

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/687 (65%), Positives = 541/687 (78%), Gaps = 27/687 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSST-VCT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 687
            IVE Q+LL++K+ I  L Q     E  E+  W  LV  G IE +D EEEET MI+MT  D
Sbjct: 240  IVENQQLLLQKKHIKWLNQGYRDDEPAEEFKWDQLVKGGVIELLDAEEEETVMIAMTPED 299

Query: 688  LVQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            L  +RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 300  LENSRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQ 359

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360  SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 419

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420  IVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTL 479

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 906
             M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ 
Sbjct: 480  RMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKS 539

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540  TENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGI PD+++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + G
Sbjct: 600  EGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKG 659

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPT 1053
            YQ RG E MY+GHTGR+L A ++LGPT
Sbjct: 660  YQSRGLEVMYHGHTGRKLQAQVYLGPT 686


>gi|52699794|gb|AAU86959.1| DNA-dependent RNA polymerase II second largest subunit [Coenogonium
            leprieurii]
          Length = 716

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/716 (61%), Positives = 553/716 (77%), Gaps = 40/716 (5%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            D +G KRLDLAGPL+ GLFR LF KLT+DV  Y+QKCV+ GK+ NL   +K+ TIT+GLK
Sbjct: 1    DXFGKKRLDLAGPLMAGLFRQLFSKLTKDVSKYLQKCVEGGKEFNLTLGVKSTTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGV+QVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGEQKKAASSKAGVAQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YITVGS + PI+EF+ +   +  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMVQRQMDVLEEYEPTRSPHAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG+HRDP  LV T++ LRRR  +++EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181  KVFVNGVWVGVHRDPGHLVSTVQSLRRRNMISSEVTLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVE-------KQRLLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEYIDT 673
            +++       K  L++ K  +  L+  RE P D           GW+ L+  G +E++D 
Sbjct: 241  VIDNDPKSPNKGSLVMTKEMVNKLEDDRELPADLEPEERKKRHFGWNGLLVNGAVEFLDA 300

Query: 674  EEEETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLIL 714
            EEEET MI+MT +DL  +RL                    P +A   T+THCEIHPS+IL
Sbjct: 301  EEEETVMIAMTPDDLEISRLVQAGYALPEPSSDPNARVKAPVKAIQQTWTHCEIHPSMIL 360

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            GVCASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+M
Sbjct: 361  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSM 420

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY ++EK +G  
Sbjct: 421  EYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYVEQEKHLGME 480

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQAS 893
            V E F +P RS T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT P+ + DE  GQ +
Sbjct: 481  VVEQFEKPLRSETLRLKHGTYEKLDDDGIIAPGVRVSGEDIIIGKTAPMRTNDEELGQRT 540

Query: 894  R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
            + +T+RD S +LR +E G++D+VL+TTNA+GL+FVKVR R+ ++PQIGDKF+SRHGQKGT
Sbjct: 541  KLHTKRDASTALRSTENGIIDKVLITTNAEGLKFVKVRTRTTKVPQIGDKFASRHGQKGT 600

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            +G+TY QEDMP++ +GI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+
Sbjct: 601  IGITYRQEDMPFSAQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTE 660

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            VTVD++S+ L + GYQ RGFE MYNGHTGR+L A IF GPTYYQRL+HMVD KI +
Sbjct: 661  VTVDSVSRLLREHGYQSRGFEIMYNGHTGRKLVAQIFFGPTYYQRLRHMVDXKIXA 716


>gi|93278291|gb|ABF06601.1| RNA polymerase II second largest subunit, partial [Cheimonophyllum
            candidissimum]
          Length = 690

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/691 (65%), Positives = 541/691 (78%), Gaps = 25/691 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LF MLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFXMLFRKLTKDVYRYLQKCVEAHKEFNLALAVKHQTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q     ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-TTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +Q+L ++K+ +  L Q  ++  E   W  LV  G +E +D EEEE  MISMT  DL  +R
Sbjct: 240  EQQLALQKKHVKWLAQGHKDDGEVYKWEHLVKGGIVELLDAEEEEXVMISMTPEDLENSR 299

Query: 693  LHPE-------------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                      +  A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 300  LQQSGVDPHANDGEFDPAARLKADINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 359

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 360  YQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 419

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSSIDRG FRS+++R Y D EKK G    E+F +P R  T+ M+HG
Sbjct: 420  CYSGYNQEDSVIMNQSSIDRGLFRSIYYRGYMDLEKKSGIQQLEEFEKPSRQQTLRMKHG 479

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS-RYTRRDHSISLRHSETGM 911
            +YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +  +TRRD S  L+ +E+GM
Sbjct: 480  TYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTPTHTRRDVSTPLKSTESGM 539

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN DG +FVKVR+RS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 540  VDQVLITTNHDGQKFVKVRIRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVP 599

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 600  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSMYLRQKGYQSRG 659

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             E MY+GHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660  LEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 690


>gi|258562140|gb|ACV81792.1| RNA polymerase II second largest subunit [Ramaria stricta]
          Length = 679

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/678 (65%), Positives = 531/678 (78%), Gaps = 28/678 (4%)

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  K+ NL  A+K  TIT+GLKYSLATGNWG Q  +  ++AGVSQVLNR T+AS
Sbjct: 3    YLQKCVETHKEFNLNLAVKPNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFAS 62

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+P+GREGK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  I+VGSA
Sbjct: 63   TLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSA 122

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + P++EFLEEWG E  EE + +  P  TK+FVNG W+G+HRDP  LVKTL++LRR+ D+ 
Sbjct: 123  SPPVIEFLEEWGLETLEENAHSTTP-CTKVFVNGVWLGVHRDPANLVKTLKKLRRKADIP 181

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG----- 658
             EV +VRDIR +ELR+YTD GR  RPLF+VE Q+L+++K+ I  LQQ    +D       
Sbjct: 182  AEVSIVRDIREQELRVYTDAGRVCRPLFVVENQQLVLQKKHIKWLQQGYRDDDPAQAPYR 241

Query: 659  WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA-------------------Y 699
            W  +V  G IE +D EEEET MISMT  DL  +RL  +                     +
Sbjct: 242  WITMVKSGIIELLDAEEEETVMISMTPEDLETSRLQQQGMESAVNDSEFDPAARLKAVMH 301

Query: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
            A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A 
Sbjct: 302  AHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMAN 361

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+
Sbjct: 362  ILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSM 421

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            ++RSY D EK  G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V GED+IIGK
Sbjct: 422  YYRSYMDMEKTSGIHQLEEFSKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGK 481

Query: 880  TTPI-SQDEAQGQ-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            T PI  + E  GQ  S +TRRD S  L+ +E+G+VDQVL+TTN+DG RFVKVRVRS RIP
Sbjct: 482  TAPIPPESEELGQKTSNHTRRDVSTPLKSTESGIVDQVLITTNSDGHRFVKVRVRSTRIP 541

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            Q GDKF+SRHGQKGT+G+TY QEDMP+TVEGITPDII+NPHAIPSRMTIG L+EC++ KV
Sbjct: 542  QTGDKFASRHGQKGTIGITYRQEDMPFTVEGITPDIIINPHAIPSRMTIGHLVECLLSKV 601

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            A  +G EGDATPFT++TV+++S  L K GY  RG E MY+GHTGR+L A ++LGPTYYQR
Sbjct: 602  ATLIGNEGDATPFTELTVESVSTLLRKQGYHSRGLEVMYHGHTGRKLQAQVYLGPTYYQR 661

Query: 1058 LKHMVDDKIHSRGRGPVQ 1075
            LKHMVDDKIHSR RGPVQ
Sbjct: 662  LKHMVDDKIHSRARGPVQ 679


>gi|52699772|gb|AAU86948.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            cervina]
          Length = 714

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/712 (62%), Positives = 544/712 (76%), Gaps = 38/712 (5%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            D  G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLK
Sbjct: 1    DXXGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCYITVGTPSQPIIDFMIQRNMEVLEEYEPQRSPNAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG+HRDP  LV T+  LRR   ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181  KVFVNGVWVGVHRDPAHLVSTVISLRRHDAISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVEKQ-------RLLIKKRDIIALQQ-RESPED--------GGWHDLVAKGFIEYIDTEE 675
            +++          L++ K  I  L+  ++ P D         GW+ LV KG +EY+D EE
Sbjct: 241  VIDNDPRSTNCGNLVLTKEHIQKLEDDKDLPPDYEIDEKNPPGWNGLVKKGVVEYVDAEE 300

Query: 676  EETTMISMT-------------------INDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
            EET MI MT                    +DL++    P    A T+THCEIHPS+ILG+
Sbjct: 301  EETVMIVMTPEDLEISRQLQAGYNLPDTSDDLIKRVKAPMNPTAHTWTHCEIHPSMILGI 360

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMG QAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME 
Sbjct: 361  CASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEF 420

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V 
Sbjct: 421  LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVV 480

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 894
            E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ 
Sbjct: 481  EQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKL 540

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 541  HVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 600

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP+T +G+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 601  ITYRQEDMPFTNQGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 660

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            VD++SK L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+HMVD KI
Sbjct: 661  VDSVSKLLREHGYQSRGFEVMYNGHTGRKLVGQVFLGPTYYQRLRHMVDXKI 712


>gi|46277265|gb|AAS86823.1| RNA polymerase II second largest subunit, partial [Eschscholzia
            californica]
          Length = 539

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/540 (83%), Positives = 497/540 (92%), Gaps = 1/540 (0%)

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALMV +TVGSAA PILE L ++GTE FEEISPA I QATK+F+NGC
Sbjct: 1    ETPEGQACGLVKNLALMVSVTVGSAANPILEILNDFGTEGFEEISPATISQATKVFLNGC 60

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 638
            WVGIHR+ ++LV  LR LRRRV VNTEVG+ RD RLKELRIYTDYGRC RPLFIVE QRL
Sbjct: 61   WVGIHRNADVLVNNLRLLRRRVLVNTEVGITRDTRLKELRIYTDYGRCCRPLFIVENQRL 120

Query: 639  LIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
            LIK++DI  +QQRE+P++GGW DLVAKG++EYIDTEEEE TMISMTINDL     +P+EA
Sbjct: 121  LIKRKDIRVIQQRENPDEGGWRDLVAKGYVEYIDTEEEENTMISMTINDLASV-FNPKEA 179

Query: 699  YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
            Y+ TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY TNYQ RMDTLA
Sbjct: 180  YSVTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYATNYQLRMDTLA 239

Query: 759  YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
            ++LYYPQKPLVTTRAMEHLHFRQLPAG+NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS
Sbjct: 240  HILYYPQKPLVTTRAMEHLHFRQLPAGMNAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 299

Query: 819  LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
            L+FRSY+ EEKKMG LVKE+FGRP+R NT+GM+HGSYDKLD+DGLAPPGT VSGED+IIG
Sbjct: 300  LYFRSYKGEEKKMGNLVKENFGRPNRENTIGMKHGSYDKLDNDGLAPPGTLVSGEDIIIG 359

Query: 879  KTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
            KT  I QDE+QGQ+S+Y++RD S SL H+E G+VDQV+LTTNADG +FVK R+RSVRIPQ
Sbjct: 360  KTVQIVQDESQGQSSQYSQRDCSTSLHHNECGVVDQVMLTTNADGSKFVKTRMRSVRIPQ 419

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            +GDKFSSRHGQKGT+GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI QLIECIMGKVA
Sbjct: 420  VGDKFSSRHGQKGTIGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIAQLIECIMGKVA 479

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            AHMGKEGDATPFTDVTVDNIS+ALHKCGYQM GFETMYNGHTGR+LT+MIF+GPTYYQRL
Sbjct: 480  AHMGKEGDATPFTDVTVDNISQALHKCGYQMHGFETMYNGHTGRKLTSMIFIGPTYYQRL 539


>gi|119644196|gb|ABL85612.1| RNA polymerase II second largest subunit [Physconia muscigena]
          Length = 718

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/718 (62%), Positives = 549/718 (76%), Gaps = 41/718 (5%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL GLFR LF KLT+DV  Y++ C++N K+  L   IK+ T+T+
Sbjct: 1    DDRDHFGKKRLDLAGPLLAGLFRTLFNKLTKDVEKYLKVCIENNKEFILNLGIKSSTLTN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM +++VG+ +  I+ FL +   E+ EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCHVSVGTPSDGIVPFLLQRQMESLEEYEPHTSP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATKIFVNG WVG+HR+P  LV  ++ LRR+  +  EV ++RDIR +E RI TD GR  R
Sbjct: 181  NATKIFVNGVWVGVHRNPVHLVNAVQTLRRKHVLEPEVSLIRDIRDREFRILTDQGRVLR 240

Query: 629  PLFIVEKQ-------RLLIKKRDIIALQQRES-PEDG----------GWHDLVAKGFIEY 670
            PLF+V+          L+  K     L   +S P D           GW+ L+ +G +EY
Sbjct: 241  PLFVVDNDAKSPNCGNLVFNKEHSQRLDDDDSVPYDMDKEVREKIIFGWNGLINEGVVEY 300

Query: 671  IDTEEEETTMISMTINDLVQAR--------------------LHPEEAYADTYTHCEIHP 710
            +D EEEET MI MT  DL  +R                      P    A T+THCEIHP
Sbjct: 301  VDAEEEETVMIVMTPQDLAMSRQLQAGYALAEPDPDEPNRRVTAPINPTAHTWTHCEIHP 360

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM+T++++LYYPQKPL T
Sbjct: 361  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMETMSHILYYPQKPLAT 420

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK+
Sbjct: 421  TRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKR 480

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
            +GT V E F +P RS+T+ ++HG+YDKLD+DGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481  IGTNVLEKFEKPMRSDTLKLKHGTYDKLDEDGLIIPGARVSGEDIIIGKTAPIAPDAEEM 540

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ ++ +T+RD S  LR +E+G+VDQVLLTTNA+GLRFVKVR+R+ ++PQIGDKF+SRHG
Sbjct: 541  GQRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHG 600

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDAT
Sbjct: 601  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 660

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            PFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718


>gi|119644321|gb|ABL85618.1| RNA polymerase II second largest subunit [Xanthoria polycarpa]
          Length = 718

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/721 (61%), Positives = 548/721 (76%), Gaps = 47/721 (6%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DD DH+G KRLDLAGPLL GLFRMLF+KLT+D+  Y+QKCV++ ++ NL   +K  T++S
Sbjct: 1    DDSDHFGKKRLDLAGPLLAGLFRMLFQKLTKDIYKYLQKCVESNREFNLALGVKQNTLSS 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM YITVG+ A PI+++L   G E+ EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPADPIVDYLTNRGMESLEEYEPTRAP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATK+FVNG W+G H DP  LV  ++ +RR+  +  E  +VRDIR +E +I+TD GR  R
Sbjct: 181  HATKVFVNGTWIGCHNDPAHLVTHIQEIRRKGIIAHEASLVRDIRDREFKIFTDAGRVCR 240

Query: 629  PLFIVEK-----------------QRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEY 670
            PLF+++                  Q+L  ++  ++ +   E  E   GW  LV  G +EY
Sbjct: 241  PLFVIDNDPKSENNGNLALTKDMVQKLEDERDMVLTMDPEERAEQVIGWEALVDSGAVEY 300

Query: 671  IDTEEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCE 707
            +D EEEET MI+MT  DL                       V+A L+P    A T+THCE
Sbjct: 301  VDAEEEETIMIAMTPEDLEISRHIQAGYAAPVPSEDAPNQRVKAPLNPT---AHTWTHCE 357

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKP
Sbjct: 358  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKP 417

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D 
Sbjct: 418  LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDT 477

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 886
            EK++G  V E+F +P R+ T+ ++HG+YDKLDDDGL  PG RVSGEDVIIGKTTPI+ D 
Sbjct: 478  EKRVGMTVLENFEKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTPIAPDA 537

Query: 887  EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
            +  GQ ++ + ++D S  LR +E G+VD+VLL+TN++GL+FVKVR+R+ +IPQIGDKF+S
Sbjct: 538  QEMGQRTKSHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFAS 597

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EG
Sbjct: 598  RHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEG 657

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFT++TVD++SK L +  YQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 658  DATPFTEITVDSVSKLLREHSYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 717

Query: 1066 I 1066
            I
Sbjct: 718  I 718


>gi|119644183|gb|ABL85611.1| RNA polymerase II second largest subunit [Phaeophyscia orbicularis]
          Length = 718

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/717 (62%), Positives = 548/717 (76%), Gaps = 41/717 (5%)

Query: 391  DRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSG 450
            DRDH+G KRLDLAGPLL GLFR LF KLT+D+  Y++ C++N K+  L   +K+ T+T+G
Sbjct: 2    DRDHFGKKRLDLAGPLLAGLFRTLFNKLTKDLEKYLKVCIENSKEFILNLGVKSSTLTNG 61

Query: 451  LKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 509
            LKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN
Sbjct: 62   LKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLHN 121

Query: 510  SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ 569
            + WG++CPAETPEGQACGLVKNLALM +++VG+ +  I+ FL +   E+ EE  P   P 
Sbjct: 122  THWGLVCPAETPEGQACGLVKNLALMCHVSVGTPSEGIVPFLLQRQMESLEEYEPHASPN 181

Query: 570  ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRP 629
            ATKIFVNG WVG+HR+P  LV  ++ LRR+  +  EV ++RDIR +E RI TD GR  RP
Sbjct: 182  ATKIFVNGVWVGVHRNPAHLVTAVQSLRRKHVLEPEVSLIRDIREREFRILTDQGRVLRP 241

Query: 630  LFIVEKQ-------RLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYI 671
            LF+VE          L+  K     L   +E P D           GW+ L+ +G +EY+
Sbjct: 242  LFVVETDPKSPNCGNLVFNKGHSNKLDDDQEVPHDMDKELREKMIFGWNGLINEGVVEYV 301

Query: 672  DTEEEETTMISMTINDLVQAR--------------------LHPEEAYADTYTHCEIHPS 711
            D EEEET MI MT  DL  +R                      P    A T+THCEIHPS
Sbjct: 302  DAEEEETVMIVMTPQDLAMSRQLQAGYALAEPDPDEPNRRVTAPMNPTAHTWTHCEIHPS 361

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM+T++++LYYPQKPL TT
Sbjct: 362  MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMETMSHILYYPQKPLATT 421

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            R+ME+L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++
Sbjct: 422  RSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRV 481

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 890
            GT V E F +P R++T+ ++HG+YDKLDDDG+  PG RVSG+DVIIGKT PIS D E  G
Sbjct: 482  GTNVLEQFEKPMRADTLKLKHGTYDKLDDDGIIIPGARVSGDDVIIGKTAPISPDAEELG 541

Query: 891  QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            Q ++ +T+RD S  LR +E+G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQ
Sbjct: 542  QRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQ 601

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KVA+  G EGDATP
Sbjct: 602  KGTIGITYRQEDMPFTSEGLVPDLIINPHAIPSRMTIAHLIECQLSKVASLRGLEGDATP 661

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            FT++TVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 662  FTEITVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718


>gi|103001574|gb|ABF71513.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            gobiense]
          Length = 709

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/711 (63%), Positives = 545/711 (76%), Gaps = 46/711 (6%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYS
Sbjct: 2    FGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYS 61

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 62   LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 121

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+
Sbjct: 122  LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKV 181

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 182  FVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 241

Query: 634  EKQ-------RLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDTEE 675
            +          L++ K  I  L+  ++ P +           GW  LV  G +EY+D EE
Sbjct: 242  DNDPKSTNCGNLVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEYVDAEE 301

Query: 676  EETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSLI 713
            EET MI MT  DL                      V+A ++P    A T+THCEIHPS+I
Sbjct: 302  EETVMIVMTPEDLEISRQIQAGYAMPETSDDLNKRVKAPMNPT---AHTWTHCEIHPSMI 358

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LG+CASIIPFPDHNQSPRNTYQSAMGKQ+MG+++TNY  RMDT+A +LYYPQKPL TTR+
Sbjct: 359  LGICASIIPFPDHNQSPRNTYQSAMGKQSMGVFLTNYDQRMDTMANILYYPQKPLATTRS 418

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G 
Sbjct: 419  MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGM 478

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 892
             V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 479  SVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQR 538

Query: 893  SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
            ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 539  TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 598

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 599  TIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 658

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            +VTVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 659  EVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 709


>gi|110169452|gb|ABG53982.1| RNA polymerase II second largest subunit, partial [Entyloma
            calendulae]
          Length = 693

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/694 (64%), Positives = 543/694 (78%), Gaps = 27/694 (3%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL GLFRMLF+KLTRD+  +++KCV++ K+  +  A+K+ TIT+GLKYS
Sbjct: 1    FGKKRLDLAGPLLSGLFRMLFKKLTRDIYRHLEKCVEDQKEFFINTAVKSATITNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q      +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            M+CPAETPEGQACGLVKNL+LM  I+VGS + PI+EFLEE+G +   ++      ++TK+
Sbjct: 121  MVCPAETPEGQACGLVKNLSLMSLISVGSQSQPIIEFLEEFGLDQLTDMRRE-DARSTKV 179

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG W+G H+DP  LV TLR LRR+ D++TEV VV DIR KELR+YTD GR  RPLFIV
Sbjct: 180  FVNGVWLGTHQDPTGLVSTLRGLRRKDDISTEVSVVHDIREKELRLYTDAGRVMRPLFIV 239

Query: 634  EK--QRLLIKKRDIIALQQ-RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-- 688
             K  + L IK++ +  LQ   E   D GW DLV  G IEY+D EEEET MISM+I DL  
Sbjct: 240  NKDDRSLFIKRKHMNWLQHGTEDGSDFGWEDLVQCGVIEYLDAEEEETVMISMSIEDLNY 299

Query: 689  -----------------VQARLHPEEAYA-DTYTHCEIHPSLILGVCASIIPFPDHNQSP 730
                               ARL     Y+ DT+THCEIHP++ILG+CASIIPFPDHNQSP
Sbjct: 300  SRAYHQNTNSVRDTLSDPSARLVSLHTYSGDTWTHCEIHPAMILGICASIIPFPDHNQSP 359

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMG+Y+TNYQ RMDT+A +LYYPQKPL TTRAM+HL FR+LPAG NAIV
Sbjct: 360  RNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLGTTRAMQHLKFRELPAGQNAIV 419

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AI CYSGYNQEDSVIMNQSSIDRG FRSL++R+Y D EKK G +  E F +P R  T+ +
Sbjct: 420  AILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYTDLEKKSGMVEMEVFEKPSRETTIRL 479

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 908
            +HG+YDKLD DGL  PGTRVSGED+IIGKT P+  D E  G  S+ +T+RD S+ L+ +E
Sbjct: 480  KHGTYDKLDADGLCAPGTRVSGEDIIIGKTVPLPGDSEELGLRSKLHTKRDASMPLKSTE 539

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
            +G+VDQVL+TTN DG++FVKVRVRS R+PQ GDKF+SRHGQKGT+G+TY QEDMP+TVEG
Sbjct: 540  SGIVDQVLVTTNGDGVKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITYRQEDMPFTVEG 599

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            +TPDII+NPHAIPSRMTIG L+EC++ KVA   G+EGDATPFT +TV+ +S  L   GYQ
Sbjct: 600  VTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDATPFTSLTVEAVSNVLKGFGYQ 659

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             RG E MYNGHTGR+L A ++LGPTYYQRLKHMV
Sbjct: 660  SRGLEIMYNGHTGRKLQAQVYLGPTYYQRLKHMV 693


>gi|52699831|gb|AAU86977.1| DNA-dependent RNA polymerase II second largest subunit [Leptogium
            cyanescens]
          Length = 713

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/715 (62%), Positives = 551/715 (77%), Gaps = 47/715 (6%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL GLFRMLF KLTRDV  Y+QKCV+  ++ NL   IK+ T+T+GLKYSLAT
Sbjct: 2    KRLDLAGPLLAGLFRMLFNKLTRDVYKYLQKCVETNREFNLTLGIKSTTLTNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNATKVFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 634
            G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++E  
Sbjct: 182  GVWVGVHRDPVHLVSTVQTLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIEND 241

Query: 635  -----KQRLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDTEEEET 678
                 +  L++ K  I+ L++ +       P++      GW  LV +G +EY+D EEEET
Sbjct: 242  PKSPNRGNLVLTKEHILRLEEDKELGPDMDPDEREAKFMGWEGLVNQGVVEYVDAEEEET 301

Query: 679  TMISMTINDL-----------------------VQARLHPEEAYADTYTHCEIHPSLILG 715
             MI MT  DL                       V+A ++P    A T+THCEIHPS+ILG
Sbjct: 302  VMIVMTPEDLEISKNVQMGYAVEEPSIDDPNRRVKAPVNPT---AHTWTHCEIHPSMILG 358

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            +CASIIPFPDHNQSPRNTYQSAMG QAMG+++TNY+ RMDT+A +LYYPQKPL TTR+ME
Sbjct: 359  ICASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSME 418

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
             L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V
Sbjct: 419  FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSV 478

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR 894
             E F +P R++T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT P+S D E  GQ ++
Sbjct: 479  VEQFEKPMRTDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPLSADNEELGQRTK 538

Query: 895  -YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
             + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+
Sbjct: 539  MHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTI 598

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            G+TY QEDMP+T EG  PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+V
Sbjct: 599  GVTYRQEDMPFTSEGQVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEV 658

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            TVD++S+ L + GYQ RGFE MYNGHTGR+L A IFLGPTYYQRL+HMVDDKI +
Sbjct: 659  TVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIXA 713


>gi|103002002|gb|ABF71531.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            cf. chlorophanum Lunke 97]
          Length = 711

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/709 (63%), Positives = 543/709 (76%), Gaps = 40/709 (5%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLAT
Sbjct: 1    KRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLAT 60

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 61   GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 120

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVN
Sbjct: 121  PAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++  
Sbjct: 181  GVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDND 240

Query: 637  -------RLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDTEEEET 678
                    L++ K  I  L+  ++ P +           GW  LV  G +EY+D EEEET
Sbjct: 241  PKSTNCGNLVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEET 300

Query: 679  TMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCAS 719
             MI MT  DL     +QA     EA  D              T+THCEIHPS+ILG+CAS
Sbjct: 301  VMIVMTPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICAS 360

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+++T Y  RMDT+A +LYYPQKPL TTR+ME L F
Sbjct: 361  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTXYDQRMDTMANILYYPQKPLATTRSMEFLKF 420

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F
Sbjct: 421  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQF 480

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 897
             +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +
Sbjct: 481  EKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVK 540

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDK +SRHGQKGT+G+TY
Sbjct: 541  RDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKXASRHGQKGTIGITY 600

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1017
             Q DMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD+
Sbjct: 601  RQXDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDS 660

Query: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            +SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661  VSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 709


>gi|320172580|gb|ADW24173.1| RNA polymerase II second largest subunit [Donkioporia expansa]
          Length = 683

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/684 (65%), Positives = 537/684 (78%), Gaps = 28/684 (4%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ N+  A+K  TIT+
Sbjct: 1    DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNVSLAVKHNTITN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q      +AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKTMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WGM+CPAETPEGQACGLVKNL+LM  I+VG+ + P++EFLEEWG E+ EE + A  P
Sbjct: 121  NTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENAHASTP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
              TK+FVNG W+G+HRDP  LV TLR+LRR+ D+N EV VVRDIR +ELR+YTD GR  R
Sbjct: 181  -CTKVFVNGVWMGVHRDPVKLVSTLRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCR 239

Query: 629  PLFIVEKQRLLIKKRDIIAL-QQRESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTIN 686
            PLFIVE Q+LLI+KR I  L + ++ P     W +L+  G IE +D EEEET MISMT  
Sbjct: 240  PLFIVENQQLLIQKRHIENLVRAKDDPTITYNWDNLLKDGVIELLDAEEEETVMISMTPE 299

Query: 687  DLVQARL-------HPEE------------AYADTYTHCEIHPSLILGVCASIIPFPDHN 727
            DL  +RL       H +E              A T+THCEIHPS+ILGVCASIIPFPDHN
Sbjct: 300  DLENSRLQATGVDPHADEENDDPSARLKAPTSAHTWTHCEIHPSMILGVCASIIPFPDHN 359

Query: 728  QS---PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
            QS   PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPA
Sbjct: 360  QSLQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLRFRELPA 419

Query: 785  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 844
            G NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R
Sbjct: 420  GQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTR 479

Query: 845  SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 902
              T+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S 
Sbjct: 480  DTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVST 539

Query: 903  SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
             L+ +E G+VDQVL+TTNA+G +FVK+RVRS R+PQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 540  PLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDM 599

Query: 963  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1022
            P+T EGITPDII+NPHAIPSRMTIG L+EC++ K+A  +G EGDATPFTD+TV+ +S+ L
Sbjct: 600  PFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTDLTVETVSQYL 659

Query: 1023 HKCGYQMRGFETMYNGHTGRRLTA 1046
             + GYQ RG E MY+GHTGR+L A
Sbjct: 660  RQKGYQSRGLEVMYHGHTGRKLQA 683


>gi|52699768|gb|AAU86946.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            bullata]
          Length = 727

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/730 (61%), Positives = 553/730 (75%), Gaps = 60/730 (8%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 61   ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM YI+VG+ + PI++F+ +   E  EE  P   P ATK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQRNMEVLEEYEPQRSPNATKVF 180

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG WVG+H+DP  LV T++ +RR   ++ EV +VRDIR +E +++TD GR  RPLF+++
Sbjct: 181  VNGVWVGVHQDPVHLVNTVQAVRRGHMISHEVSLVRDIRDREFKVFTDAGRVCRPLFVID 240

Query: 635  KQ-------RLLIKK---------RDIIA-----LQQRESPEDG--------GWHDLVAK 665
                      L++ K         +D+ A     ++++E  E G        GW+ L+ +
Sbjct: 241  NDPKSLKCGSLVLTKEHINKLEDYKDLTAEMQERIREKEEAEKGVKEDGTPYGWNGLIKR 300

Query: 666  GFIEYIDTEEEETTMISMTINDL-------------------------VQARLHPEEAYA 700
            G +EY+D EEEET MI MT  DL                         V+A L+P    A
Sbjct: 301  GVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYRLPEPSDTSEALMKRVKAPLNPT---A 357

Query: 701  DTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYV 760
             T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNY  RMDT+A +
Sbjct: 358  HTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYDQRMDTMANI 417

Query: 761  LYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLF 820
            LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF
Sbjct: 418  LYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 477

Query: 821  FRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKT 880
            +RSY D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT
Sbjct: 478  YRSYTDQEKRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKT 537

Query: 881  TPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQ 938
             PI+ D E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQ
Sbjct: 538  APIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQ 597

Query: 939  IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
            IGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV+
Sbjct: 598  IGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVS 657

Query: 999  AHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            +  G EGDATPFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL
Sbjct: 658  SLRGFEGDATPFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRL 717

Query: 1059 KHMVDDKIHS 1068
            +HMVD KI +
Sbjct: 718  RHMVDXKIXA 727


>gi|300394688|gb|ADK11882.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
            puteana]
          Length = 686

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/686 (65%), Positives = 539/686 (78%), Gaps = 27/686 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSS-AACT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIND 687
            IVE Q+LL++K+ I  L Q     +  E+  W  LV  G IE +D EEEET MI+MT  D
Sbjct: 240  IVEDQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQLVKGGVIELLDAEEEETVMIAMTPED 299

Query: 688  LVQARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            L  +RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 300  LENSRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQ 359

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360  SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 419

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420  IVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTL 479

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 906
             M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ 
Sbjct: 480  RMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKS 539

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540  TENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + G
Sbjct: 600  EGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKG 659

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGP 1052
            YQ RG E MY+GHTGR+L A ++L P
Sbjct: 660  YQSRGLEVMYHGHTGRKLQAQVYLVP 685


>gi|103001206|gb|ABF71497.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            fulvoviridula]
          Length = 708

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/711 (62%), Positives = 544/711 (76%), Gaps = 46/711 (6%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYS
Sbjct: 1    FGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+
Sbjct: 121  LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKV 180

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181  FVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 634  EKQ-------RLLIKKRDIIALQ-----------QRESPEDGGWHDLVAKGFIEYIDTEE 675
            +          L++ K  I  L+           + +  +  GW  LV  G +EY+D EE
Sbjct: 241  DNDPKSTHCGNLVLTKEHINKLEDDKDLPATTDTEEKDAKFFGWDGLVNNGVVEYVDAEE 300

Query: 676  EETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSLI 713
            EET MI MT  DL                      V+A ++P    A T+THCEIHPS+I
Sbjct: 301  EETVMIVMTPEDLEISRQIQAGYTIPETSDDLNKRVKAPMNPT---AHTWTHCEIHPSMI 357

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+
Sbjct: 358  LGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRS 417

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G 
Sbjct: 418  MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGM 477

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 892
             V E F +P RS+T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 478  SVVEQFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQR 537

Query: 893  SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
            ++ + +RD S  LR +E G+VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 538  TKLHVKRDVSTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 597

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 598  TIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 657

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            +VTVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 658  EVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 708


>gi|52699780|gb|AAU86952.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            macrospora subsp. macrospora]
          Length = 706

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/706 (62%), Positives = 541/706 (76%), Gaps = 38/706 (5%)

Query: 399  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 458
            RLD AGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATG
Sbjct: 1    RLDXAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATG 60

Query: 459  NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 517
            NWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 61   NWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 120

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+FVNG
Sbjct: 121  AETPEGQACGLVKNLALMCYITVGTPSQPIIDFMIQRNMEVLEEYEPQRSPNATKVFVNG 180

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ- 636
             WVG+HRDP  LV T+  LRR   ++ EV +VRDIR +E +I+TD GR  RPLF++    
Sbjct: 181  VWVGVHRDPAHLVSTVLALRRANAISHEVSLVRDIRDREFKIFTDAGRVCRPLFVINNDP 240

Query: 637  ------RLLIKKRDIIALQQ-RESPED--------GGWHDLVAKGFIEYIDTEEEETTMI 681
                   L++ K+DI  L+  ++ P+D         GW+ L+  G +EY+D EEEET MI
Sbjct: 241  RSKNCGNLVLTKQDIHKLEDDKDLPDDYEIDEKNPPGWNGLIKHGIVEYVDAEEEETVMI 300

Query: 682  SMT-------------------INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
             MT                    +DL++    P    A T+THCEIHPS+ILG+CASIIP
Sbjct: 301  VMTPEDLEISRQLQAGYNLPDTSDDLIKRVKAPMNPTAHTWTHCEIHPSMILGICASIIP 360

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMG QAMG  +TNY  RMDT+A +LYYPQKPL TTR+ME L FR+L
Sbjct: 361  FPDHNQSPRNTYQSAMGXQAMGXXLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFREL 420

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P
Sbjct: 421  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKP 480

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 900
             RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD 
Sbjct: 481  MRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDV 540

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY QE
Sbjct: 541  STPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRQE 600

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
            DMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK
Sbjct: 601  DMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSK 660

Query: 1021 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
             L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661  LLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 706


>gi|300394714|gb|ADK11895.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
            olivascens]
          Length = 677

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/678 (65%), Positives = 536/678 (79%), Gaps = 25/678 (3%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLKYS
Sbjct: 1    FGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            M+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+
Sbjct: 121  MVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSSP-CTKV 179

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIV
Sbjct: 180  FVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIV 239

Query: 634  EKQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            E Q+L ++K+ +  L Q   +  E+  W  LV  G IE +D EEEET MISMT  DL  +
Sbjct: 240  ENQQLSLQKKHVKWLNQGQNDEGEEYKWEQLVKGGIIELLDAEEEETVMISMTPEDLENS 299

Query: 692  RLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
            RL          EE Y           A T+THCEIHPS+ILGVCASIIPFPDHNQSPRN
Sbjct: 300  RLQSAGIDPHTNEEEYDPAARLKAGINAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRN 359

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 360  TYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 419

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
             CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+H
Sbjct: 420  LCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKH 479

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 910
            G+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G
Sbjct: 480  GTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENG 539

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 540  IVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIV 599

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++SK L++ GYQ R
Sbjct: 600  PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSKFLYQKGYQSR 659

Query: 1031 GFETMYNGHTGRRLTAMI 1048
            G E MY+GHTGR+L A +
Sbjct: 660  GLEVMYHGHTGRKLQAQV 677


>gi|300394670|gb|ADK11873.1| DNA-directed RNA polymerase II subunit two, partial [Anomoloma
            albolutescens]
          Length = 686

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/686 (64%), Positives = 537/686 (78%), Gaps = 26/686 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 2    DHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 61

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 62   YSLATGNWGDQTKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 121

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 122  WGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 181  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 240

Query: 632  IVEKQRLLIKKRDIIALQQ---RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            IVE Q+L ++K+ +  L Q    +  E+  W  LV  G IE +D EEEET MISMT  DL
Sbjct: 241  IVENQQLALQKKHVKWLNQGYRDDDQEEFKWEQLVKSGIIELLDAEEEETVMISMTPEDL 300

Query: 689  VQARL-------HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQS 729
              +RL       H  +              A T+THCEIHPS+ILG+CASIIPFPDHNQS
Sbjct: 301  ENSRLQQSGVDPHANDGDFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQS 360

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 361  PRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 420

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P+R NT+ 
Sbjct: 421  VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPNRDNTLR 480

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 907
            M+HG+YDK+ +DGL  PGT V+GED+I+  T PI  D E  GQ +R ++RRD S  L+ +
Sbjct: 481  MKHGTYDKIREDGLIAPGTGVTGEDIILENTAPIPPDSEELGQRTRTHSRRDVSTPLKST 540

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E G+VDQVL+TTN +G +FVKVRVRS RI QIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 541  ENGIVDQVLITTNHEGQKFVKVRVRSTRISQIGDKFASRHGQKGTIGITYRQEDMPFTAE 600

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            GI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 601  GIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 660

Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPT 1053
            Q RG E MY+GHTGR+L A ++LGPT
Sbjct: 661  QSRGLEVMYHGHTGRKLQAQVYLGPT 686


>gi|52699902|gb|AAU87012.1| DNA-dependent RNA polymerase II second largest subunit [Trichoglossum
            hirsutum]
          Length = 709

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/712 (62%), Positives = 545/712 (76%), Gaps = 48/712 (6%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLF+KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLANLFRMLFKKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMCYITVGTPSDPIIEFMVQRNMEVLEEYEPQRSPNATKVFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVG+HRD   LV+T++ LRR   ++ EV +VRDIR +E +I+TD GR  RPLF+++  
Sbjct: 182  GVWVGVHRDAAHLVRTVQHLRRTHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNN 241

Query: 637  -------RLLIKKRDIIALQ------------QRESPEDGGWHDLVAKGFIEYIDTEEEE 677
                    L++ K  I+ L+            QRE  +  GW  LV +G +EY+D EEEE
Sbjct: 242  PASPNRGNLVLNKEHIMKLEDDKDLDPALDPEQREG-QMFGWKGLVNQGIVEYVDAEEEE 300

Query: 678  TTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSLILG 715
            T MI MT  DL                      V+A ++P    A T+THCEIHPS+ILG
Sbjct: 301  TVMIVMTPEDLEISRQLQAGYAVPEDNSDPNKRVKAPINPT---AHTWTHCEIHPSMILG 357

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            +CASIIPFPDHNQSPRNTYQSAMGKQA G+++TNY  RMDT+A +LYYPQKPL TTR+ME
Sbjct: 358  ICASIIPFPDHNQSPRNTYQSAMGKQAXGVFLTNYDQRMDTMANILYYPQKPLATTRSME 417

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
             L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  +
Sbjct: 418  FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYSDQEKRIGMNI 477

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASR 894
             E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS + E  GQ ++
Sbjct: 478  LETFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPESEELGQRTK 537

Query: 895  Y-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
            Y  +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+
Sbjct: 538  YHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTI 597

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+V
Sbjct: 598  GITYRSEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEV 657

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD K
Sbjct: 658  TVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXK 709


>gi|52699812|gb|AAU86968.1| DNA-dependent RNA polymerase II second largest subunit [Glypholecia
            scabra]
          Length = 722

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/723 (62%), Positives = 545/723 (75%), Gaps = 55/723 (7%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 61   ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMCYITVGTPSQPIIDFMIQRNMEVLEEYEPQRSPNATKVF 180

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG WVG+HRDP  LV T+  LRR   ++ EV +VRDIR +E +I+TD GR  RPLF+++
Sbjct: 181  VNGVWVGVHRDPAHLVSTVIALRRLNAISHEVSLVRDIRDREFKIFTDAGRVCRPLFVID 240

Query: 635  -------KQRLLIKKRDIIALQQRE--SPE------------------DGGWHDLVAKGF 667
                   +  L++ K  I  L+  +  +PE                    GW  LV  G 
Sbjct: 241  NDPKSHNRGSLVLTKDHIHKLEDDKELTPEQIAELAAEVDPVTGHKKTSPGWDGLVETGV 300

Query: 668  IEYIDTEEEETTMISMTINDL----------------------VQARLHPEEAYADTYTH 705
            +EY+D EEEET MI MT  DL                      V+A ++P    A T+TH
Sbjct: 301  VEYVDAEEEETVMIVMTPEDLEISRQLQAGFTFPETSDDLNKRVKAPMNPT---AHTWTH 357

Query: 706  CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 765
            CEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMG QAMG+++TNY  RMDT+A +LYYPQ
Sbjct: 358  CEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQ 417

Query: 766  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 825
            KPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY 
Sbjct: 418  KPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYT 477

Query: 826  DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
            D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ 
Sbjct: 478  DQEKRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAP 537

Query: 886  D-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKF 943
            D E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF
Sbjct: 538  DAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKF 597

Query: 944  SSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1003
            +SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G 
Sbjct: 598  ASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGF 657

Query: 1004 EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            EGDATPFT+VTVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD
Sbjct: 658  EGDATPFTEVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 717

Query: 1064 DKI 1066
             KI
Sbjct: 718  XKI 720


>gi|52699857|gb|AAU86990.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 714

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/715 (62%), Positives = 544/715 (76%), Gaps = 46/715 (6%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ TIT+GLKYS
Sbjct: 1    FGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTITNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+
Sbjct: 121  LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKV 180

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDI  +E +I+TD GR  RP F+ 
Sbjct: 181  FVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIXDREFKIFTDAGRVCRPXFVX 240

Query: 634  EKQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEE 675
            +          L++ K         +D+ A+   E  E    GW  LV  G +EY+D EE
Sbjct: 241  DXDPKSTNCGNLVLTKEHINKLEDDKDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEE 300

Query: 676  EETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSLI 713
            EET MI MT  DL                      V+A ++P    A T+THCEIHPS+I
Sbjct: 301  EETVMIVMTPEDLEISRQIQAGYAMPETSDDPNKRVKASMNPT---AHTWTHCEIHPSMI 357

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LG+CASIIPFPDHNQSPRNTYQSAMG QAMG+++TNY  RMDT+A +LYYPQKPL TTR+
Sbjct: 358  LGICASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRS 417

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G 
Sbjct: 418  MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGM 477

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 892
             V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 478  SVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQR 537

Query: 893  SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
            ++ + +RD S  LR +E G+ DQVLLTT A+GL+FVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 538  TKLHVKRDVSTPLRSTENGIXDQVLLTTXAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 597

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T+G+TY QEDMP+T+EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 598  TIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 657

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            +VTVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 658  EVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 712


>gi|40644547|emb|CAD88888.1| DNA-directed RNA polymerase subunit B [Gymnosporia arbutifolia]
          Length = 459

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/459 (94%), Positives = 451/459 (98%)

Query: 609  VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFI 668
            VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK+DI ALQQRES E+  WH+L+ KGFI
Sbjct: 1    VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESLEEDAWHELIKKGFI 60

Query: 669  EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            EYIDTE+EETTMI MTINDLVQAR++PEEAY++TYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 61   EYIDTEKEETTMIPMTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 120

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 121  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 180

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAIACYSGYNQEDSVIMNQSS+DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR++TM
Sbjct: 181  IVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTM 240

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE 908
            GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI+Q++AQGQ SRYTRRDHSISLRHSE
Sbjct: 241  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITQEDAQGQGSRYTRRDHSISLRHSE 300

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
            TGMVDQVLLTTNADGLR VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG
Sbjct: 301  TGMVDQVLLTTNADGLRSVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 360

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            ITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
Sbjct: 361  ITPDIIVNPHAIPSRMTIGQLIECLMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 420

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH
Sbjct: 421  MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 459


>gi|88601058|gb|ABD46525.1| RNA polymerase II second largest subunit, partial [Sistotrema
            confluens]
          Length = 680

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/680 (64%), Positives = 535/680 (78%), Gaps = 26/680 (3%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DD DH+G KRLDLAGPLL  LFRMLFRKLT+DV  ++QKCV++ KD N+  A+K+ TIT+
Sbjct: 1    DDSDHFGKKRLDLAGPLLASLFRMLFRKLTKDVYRHLQKCVESHKDFNISIAVKSNTITN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  +  ++AGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFL+EWG E+ EE + A   
Sbjct: 121  NTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLQEWGLESLEENANAH-G 179

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATK+FVNG W+G+HRD   LVKTLRRLRR+ D+++EV +VRDIR KELR+YTD GR  R
Sbjct: 180  SATKVFVNGVWMGVHRDAPNLVKTLRRLRRKDDISSEVSIVRDIREKELRLYTDAGRVCR 239

Query: 629  PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            PLFIVE Q+LL+KK  +  L  +   E   W  LV  G IE +D EEEET MI MT +DL
Sbjct: 240  PLFIVENQQLLLKKEHVNMLNDKGRNEPYKWTHLVKDGVIELLDAEEEETVMICMTPDDL 299

Query: 689  VQARLHPEEA----------------------YADTYTHCEIHPSLILGVCASIIPFPDH 726
              +R +   A                       A T+THCEIHPS+ILG+CASIIPFPDH
Sbjct: 300  ENSRTNQAVAAGYVSNAGASDHDVAARVRSTMTAHTWTHCEIHPSMILGICASIIPFPDH 359

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRNTYQSAMGKQAMGIY+TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG 
Sbjct: 360  NQSPRNTYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQ 419

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
            NA VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK+G L  E+F +P R  
Sbjct: 420  NATVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYTDAEKKVGILPLEEFEKPTRDT 479

Query: 847  TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISL 904
            T+ M+HG+Y+KL+DDGL  PGT V+GED+IIGKT P+  D E  GQ  R +TRRD S  L
Sbjct: 480  TLRMKHGTYEKLEDDGLIAPGTGVTGEDIIIGKTAPLPPDSEELGQRMRTHTRRDVSTPL 539

Query: 905  RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
            + +E G+VDQVL+TTN DGL+FVK+R+R+ RIPQ+GDKF+SRHGQKGTVG+TY  EDMP+
Sbjct: 540  KSTENGIVDQVLVTTNQDGLKFVKIRIRATRIPQVGDKFASRHGQKGTVGITYRHEDMPF 599

Query: 965  TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1024
            T EGITPDII+NPHAIPSRMTIG LIEC++ K+A  +G EGDATPFT++TV+++S+ L +
Sbjct: 600  TAEGITPDIIINPHAIPSRMTIGHLIECLLSKLATLIGNEGDATPFTELTVESVSQLLRQ 659

Query: 1025 CGYQMRGFETMYNGHTGRRL 1044
             GYQ RG E MY+GHTG++L
Sbjct: 660  HGYQSRGLEVMYHGHTGKKL 679


>gi|113957140|gb|ABI49100.1| RNA polymerase II second largest subunit [Lobaria scrobiculata]
          Length = 714

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/717 (62%), Positives = 545/717 (76%), Gaps = 47/717 (6%)

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G  RLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+  ++ NL   +K+ T+T+GLKY
Sbjct: 1    HFGKNRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVEGNREFNLTLGVKSTTLTNGLKY 60

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            SLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 61   SLATGNWGGQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 120

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            G++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK
Sbjct: 121  GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNATK 180

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            +FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+
Sbjct: 181  VFVNGVWVGVHRDPAHLVSTVQSLRRRHWISHEVSLVRDIRDREFKIFTDAGRVCRPLFV 240

Query: 633  VE-------KQRLLIKKRDIIALQQR---------ESPEDG--GWHDLVAKGFIEYIDTE 674
            ++       +  L++ K  +  L+           E  ED   GW  LV +G +EY+D E
Sbjct: 241  IDNDPKSPNRGNLVLTKEHVNKLEDDKELGPDVDPEGREDKFRGWKGLVNQGVVEYVDAE 300

Query: 675  EEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCEIHPS 711
            EEET MI MT  DL                       V+A L+P    A T+THCEIHPS
Sbjct: 301  EEETVMIVMTPEDLEISRQIQAGYVMPEPSIDAPNKRVKAPLNPT---AHTWTHCEIHPS 357

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TT
Sbjct: 358  MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLATT 417

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            R+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSS DRG FRSLF+R+Y D+EK++
Sbjct: 418  RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSTDRGLFRSLFYRAYTDQEKRI 477

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 890
            G  V E F +P R +T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  G
Sbjct: 478  GMNVVEQFEKPFRQDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEEMG 537

Query: 891  QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            Q ++ + +RD S  LR +E G+VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQ
Sbjct: 538  QRTKAHIKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQ 597

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV    G EGDATP
Sbjct: 598  KGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVGTLRGLEGDATP 657

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            FTDVTVD++SK L   GYQ RGFE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKI
Sbjct: 658  FTDVTVDSVSKLLRDHGYQSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKI 714


>gi|332796432|ref|YP_004457932.1| RNA polymerase subunit B [Acidianus hospitalis W1]
 gi|332694167|gb|AEE93634.1| RNA polymerase subunit B [Acidianus hospitalis W1]
          Length = 1123

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1182 (42%), Positives = 710/1182 (60%), Gaps = 72/1182 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ++ +D WA++ +YF+ +GLVRQ LDSF++FI+N +QEI+DE  +IE        PG    
Sbjct: 2    LSVDDRWAIVESYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEIE-----TEIPG---- 52

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                  KI  G+I + KP + E+D     + P  ARLRNLTY+AP+Y+ +    ++   +
Sbjct: 53   -----LKIKLGKIRVGKPRVREADRGDREITPMEARLRNLTYAAPIYLTMIP--VENNIE 105

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
            GE        T+V+IG +PIML+S          + L E+GE P D GGYFIING+EKV+
Sbjct: 106  GEP-------TEVYIGDLPIMLKSVADPTADLPAEKLVEIGEDPKDPGGYFIINGTEKVI 158

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            + QE ++TN V V + +  +   + A++ S       P +   +R               
Sbjct: 159  VTQEDLATNRVLVDEGKSGSNVTHTAKIISSTAGYRVPITIERLR------------DST 206

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
            I  + P +   IP  I+ RALG   D+DI   + +D    ++   L PSLE+A  I  Q+
Sbjct: 207  IHVSFPAVPGRIPFAILMRALGLETDRDITFAVSFD---EEIQNELLPSLEQASSITTQE 263

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
             ALD+IG R A +G  R+ RI+ A+++L K  LPH+G       KKAYY GY + +L+  
Sbjct: 264  DALDFIGNRVA-IGQKRENRIERAEQVLDKYFLPHLGLTPADRKKKAYYLGYAVSKLIEL 322

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
             LGRR  DD+DHY NKRL LAG L   LFR+ F+   +D+   ++K    G+ + L   +
Sbjct: 323  QLGRREPDDKDHYANKRLKLAGDLFSSLFRVAFKAFVKDLVYQLEKSKVRGRRLTLNALV 382

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            +   IT  +++++ATGNW      G R GVSQ+L+R  + S LSHLRR+ S + R     
Sbjct: 383  RPDIITERIRHAMATGNW-----VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNF 437

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            + R LH +QWG MCP ETPEG   GLVKNLAL+  I+VG     + + L E G    EE+
Sbjct: 438  EARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQISVGINDKIVEKMLYELGVIPLEEL 497

Query: 563  --------SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIR- 613
                     P+     +K+ +NG  VG + + E L   +R  RR  +++ E+ V   +  
Sbjct: 498  IRKIDEGEDPSSYTNWSKVILNGRLVGYYPNGEELANKMREKRRAGEISDEINVAHIVTD 557

Query: 614  -LKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYID 672
               E+ + +D GR  RPL +V+  + L+ + DI  L++ E   D     LV +G IE++D
Sbjct: 558  TYDEVYVNSDSGRVRRPLIVVKDGKPLVTEEDIQRLKKGEITFD----TLVKEGKIEFLD 613

Query: 673  TEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
             EEEE   I+     L  +++ PE      +TH EI    ILG+ ASIIP+P+HNQSPRN
Sbjct: 614  AEEEENAYIA-----LEPSKVTPE------HTHLEIWTPAILGITASIIPYPEHNQSPRN 662

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAM KQA+G+Y +NYQ R D+ A+ L+YPQKPLV TRA++ + +   PAG NAI+A+
Sbjct: 663  TYQSAMAKQALGLYASNYQLRTDSRAHFLHYPQKPLVQTRALDIIGYNNRPAGENAILAV 722

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
              ++GYN ED++IMN+SS++RG FRS FFR Y  EE K     ++    P+     G + 
Sbjct: 723  MSFTGYNMEDAIIMNKSSVERGMFRSTFFRLYSAEEIKYPGGQEDKIQLPE-PGVRGYKG 781

Query: 853  GSYDK-LDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASRYTRRDHSISLRHSETG 910
              Y K LD++G+ PP   V G DV+IGK +P     E +  +    +RD S+  RH E G
Sbjct: 782  SDYYKSLDENGIVPPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSVITRHGEKG 841

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VD VL+T  ++G + VKVRVR +RIP++GDKF++RHGQKG +GM   Q DMP+TV+GI 
Sbjct: 842  IVDLVLITETSEGNKLVKVRVRDLRIPELGDKFATRHGQKGVIGMLIPQADMPYTVKGIV 901

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDII+NPH++PSRMT+GQ++E + GK AA  GK  DATPF +  ++ + K L   G+   
Sbjct: 902  PDIILNPHSLPSRMTLGQIMEALAGKYAALSGKTVDATPFYNTPIEELQKKLLDFGFLPD 961

Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
            G E +Y+G TG+++   I  G  YYQ+L HMV DK+H R RGP+QILTRQP EGR+R+GG
Sbjct: 962  GTEVVYDGRTGQKVKGRILYGVVYYQKLHHMVADKMHGRARGPIQILTRQPTEGRAREGG 1021

Query: 1091 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNK 1150
            LRFGEMERDC+I +GA+  +K+RL D SD   V+VCE CG I   +  KN + C    +K
Sbjct: 1022 LRFGEMERDCLIGYGAAMVIKDRLLDNSDKTTVYVCEQCGYIGWYDKNKNKYVCPIHGDK 1081

Query: 1151 TDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKK 1192
             ++  V I YA KLL QELM+M I+PR++  +      D+ +
Sbjct: 1082 ANLYPVTISYAFKLLLQELMSMVISPRLILGDKVSLKGDNNE 1123


>gi|103001385|gb|ABF71505.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 709

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/707 (63%), Positives = 541/707 (76%), Gaps = 40/707 (5%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSL
Sbjct: 3    GKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSL 62

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 63   ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 122

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+F
Sbjct: 123  VCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVF 182

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++
Sbjct: 183  VNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVID 242

Query: 635  KQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEE 676
                      L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEE
Sbjct: 243  NDPKSTNCGNLVLTKEHISKLEDDRDLPAIMDPEEKEAKFFGWDGLVNNGVVEYVDAEEE 302

Query: 677  ETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVC 717
            ET MI MT  DL     +QA     EA  D              T+THCEIHPS+ILG+C
Sbjct: 303  ETVMIVMTPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGIC 362

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRNTYQSAMGK  MG+++TNY  RMDT+A +LYYPQKPL TTR+ME L
Sbjct: 363  ASIIPFPDHNQSPRNTYQSAMGKXXMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFL 422

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
             FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E
Sbjct: 423  KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVE 482

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 895
             F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ +
Sbjct: 483  QFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLH 542

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
             +RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 543  VKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 602

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1015
            TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV
Sbjct: 603  TYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTV 662

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            D++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+ MV
Sbjct: 663  DSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRXMV 709


>gi|94410908|gb|ABF18575.1| RNA polymerase II second largest subunit, partial [Gloiocephala
            aquatica]
          Length = 685

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/686 (63%), Positives = 535/686 (77%), Gaps = 24/686 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLTRDV  Y+QKCV+  K+ N+   +K +TI +GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETRKEFNVNVGVKRQTIXNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTP-FTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LV T+++LRR+ D++ EV VVRDIR K L +YTD GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPANLVNTIKKLRRKDDISPEVSVVRDIREKXLXLYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
             Q+L ++K+ +  +Q    +S E+  W  L+  G +E +D EEEET MISM+  DL  +R
Sbjct: 240  NQQLSLQKKHVKWIQSGVDDSGEEYKWEQLIKTGIVELLDAEEEETVMISMSTEDLENSR 299

Query: 693  LHPEE------------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
                                     A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 300  TQSAGDVPMNEGEFDPAARLKAGTNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 359

Query: 735  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
            QSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 360  QSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILC 419

Query: 795  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
            YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R +T+ M+HG+
Sbjct: 420  YSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDVEKKSGIQALEEFEKPQRESTLRMKHGT 479

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 912
            YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G++
Sbjct: 480  YDKLEDDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRMHTRRDVSTPLKSTESGII 539

Query: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            DQVL+TTN+DG +FVKVRVR+ RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI PD
Sbjct: 540  DQVLITTNSDGQKFVKVRVRATRIPQTGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPD 599

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032
            II+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG 
Sbjct: 600  IIINPHAIPSRMTIGHLVECLLSKVATLIGHEGDATPFTDLTVESVSTFLRQKGYQSRGL 659

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            E MY+GHTGR+L A ++LGPTYYQRL
Sbjct: 660  EVMYHGHTGRKLQAQVYLGPTYYQRL 685


>gi|110669596|gb|ABG81893.1| RNA polymerase II second largest subunit [Pertusaria dactylina]
          Length = 714

 Score =  920 bits (2379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/714 (61%), Positives = 547/714 (76%), Gaps = 40/714 (5%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPL+ GLFRMLF+KLT+DV  Y+QKCV++ ++ NL   +K+ T+T+GLK
Sbjct: 1    DHFGKKRLDLAGPLMAGLFRMLFKKLTKDVYKYLQKCVESNREFNLTLGVKSTTLTNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM  +TVGS + PI++F+     E  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMISRSMEVLEEYEPLRSPNAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNG W+G+HR+P  LV+ ++ LRR   ++ EV +VRDIR +E +I+TD GR +RPLF
Sbjct: 181  KIFVNGVWIGVHRNPTDLVRIVQGLRRNGMISHEVSLVRDIRDREFKIFTDAGRVTRPLF 240

Query: 632  IVE-------KQRLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDT 673
            +++       K  L++ K  +  L+  ++ P D           GW  LV  G +EY+D 
Sbjct: 241  VIDNDPKSSNKGNLVLTKEIVNRLEDDKDLPADMDPDEKAAKTMGWDGLVKAGVVEYLDA 300

Query: 674  EEEETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLIL 714
            EEEET MI MT  DL  +R                     P    A T+THCEIHPS+IL
Sbjct: 301  EEEETVMIVMTPEDLDISRQLQAGYQMPETTDDPNKRVKAPVNPTAHTWTHCEIHPSMIL 360

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            G+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT++ +LYYPQKPL TTR+M
Sbjct: 361  GICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMSNILYYPQKPLATTRSM 420

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  
Sbjct: 421  EFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMS 480

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 893
            V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ +
Sbjct: 481  VVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRT 540

Query: 894  R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
            + + +RD S  LR +E G+VD+VLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT
Sbjct: 541  KLHIKRDASTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGT 600

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            +G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+
Sbjct: 601  IGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTE 660

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            VTVD++S+ L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+HMVDDKI
Sbjct: 661  VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVVQVFLGPTYYQRLRHMVDDKI 714


>gi|357216637|gb|AET71052.1| RNA polymerase II second largest subunit, partial [Trametes elegans]
          Length = 674

 Score =  920 bits (2379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/674 (65%), Positives = 534/674 (79%), Gaps = 24/674 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + A  P  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHASTP-CTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIAL-QQRESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
             Q+LL++K+ +  L + +E PE D  W +L+  G IE +D EEEET MI MT  DL  +R
Sbjct: 240  NQQLLLQKKHVENLVRGKEEPEFDYKWDNLIRDGVIEMLDAEEEETVMICMTPEDLENSR 299

Query: 693  LHPE------------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
            L                        A T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY
Sbjct: 300  LQAAGIDPNAEGEVDPSARLKAATNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 359

Query: 735  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
            QSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA+VAI C
Sbjct: 360  QSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAVVAILC 419

Query: 795  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
            YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+
Sbjct: 420  YSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGT 479

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 912
            YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ +E+G++
Sbjct: 480  YDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTESGII 539

Query: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD
Sbjct: 540  DQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPD 599

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032
            II+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + GYQ RG 
Sbjct: 600  IIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKGYQSRGL 659

Query: 1033 ETMYNGHTGRRLTA 1046
            E MY+GHTGR+L A
Sbjct: 660  EVMYHGHTGRKLQA 673


>gi|322511148|gb|ADX06461.1| putative DNA directed RNA polymerase II [Organic Lake phycodnavirus
            2]
          Length = 1162

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1187 (41%), Positives = 721/1187 (60%), Gaps = 59/1187 (4%)

Query: 25   QEDAWAVISAYFEE---KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
            + D+W VI +YF+      LV+ Q+DS+++FIQN M + +D    + ++    + P  ++
Sbjct: 4    ESDSWNVIESYFKHIHLHQLVKHQVDSYNDFIQNQMMKTIDMFNPLVVKSPHDYFPEYKT 63

Query: 82   DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-TKRVIKKG 140
               E   +I F  + + +P + E++G T  +FP  ARLRN TYS+ + +D+  K +I+ G
Sbjct: 64   YRLEV--EIVFENLSIYRPEIHENNGSTKLMFPSDARLRNFTYSSNITLDMKIKYIIRNG 121

Query: 141  HDGE-EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
               E E  +    +K+  GK+PIML S  C L Q        + EC  D GGYFIINGSE
Sbjct: 122  ERLENEEYKYIHLSKIQFGKIPIMLNSCICVLKQYPNIHPDNIDECKMDPGGYFIINGSE 181

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
            K  + QEK + N ++ FK++  NK+ + AE RS+ + +   P  +++ + S+ S  G   
Sbjct: 182  KTCLGQEKPADNKIFCFKQKPGNKWLWTAEYRSVPDWKCISPKQIYMMVHSKLSCYGHE- 240

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-DTQMMELLRPSLEEAFVI 318
               I   LP ++  IP+ ++FRALG  +DK I   +  D + +T +++ L+ S+ E    
Sbjct: 241  ---ILVQLPRLKKPIPLFVLFRALGVESDKQICSLVVLDIEKETSILDYLKASIYEGTSY 297

Query: 319  QNQQVALDYIGKRGATVGVTRDK------RIKYAKEILQKEMLPHVGTGDFCETK--KAY 370
             N + +L+YI        +  DK      + ++A ++L  ++ PH      C+TK  K Y
Sbjct: 298  NNYEDSLEYIISNVIYTPINMDKDEGHKKKTEFALDVLSNDLFPH------CKTKEEKVY 351

Query: 371  YFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 430
              G++ ++L+ C  G   + +RD Y NKR++L G LL  LFR  F K+ +D++  V + +
Sbjct: 352  LLGFMTNKLIKCFCGMEQQTNRDSYENKRVELTGTLLNNLFRNYFNKVVKDIQKQVIREI 411

Query: 431  DNGKD------------VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNR 478
            +NG               N+   +K+ TI +G+K +L+TG++G  +    + GV+QVLNR
Sbjct: 412  NNGSWKSSEDYSNIITLTNIYKIVKSTTIENGIKRALSTGDFGIKSMNTNKVGVAQVLNR 471

Query: 479  LTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 538
            LTY STLSHLRR+N+PI + GKL +PR+LH S WG +CPAETPEGQ+ G+VKNL+ M  +
Sbjct: 472  LTYLSTLSHLRRVNTPIDKSGKLVEPRKLHGSTWGFLCPAETPEGQSVGVVKNLSYMTNV 531

Query: 539  TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRR 598
            +  S + PI E+++ +     +  +        KIFVNG W+G+   P  L  +L+  + 
Sbjct: 532  STYSDSTPIYEYIQPYLFA-LDHYNTTEFYDKVKIFVNGRWIGVTNQPNELFLSLKEKKY 590

Query: 599  RVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG 658
            +  ++    +V + +LKE+ +  + GR  RPLF V++ ++L+ K     + ++   +   
Sbjct: 591  KGMIHIYCSIVFNYKLKEIYVCNECGRLVRPLFKVKQNKILLTK----DMTEQIKEDKLV 646

Query: 659  WHDLV-----AKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 713
            W DL+         IEYID EE+ T+MI M  N L Q           +YTHCEIHPS I
Sbjct: 647  WRDLILPLKTEDSIIEYIDAEEQNTSMICMKPN-LFQDNY--------SYTHCEIHPSTI 697

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
             GV AS IPFP HNQSPRNTYQ AMGKQA+GIYV+N+  RMD  AYVL Y  +PLV TR 
Sbjct: 698  FGVLASCIPFPQHNQSPRNTYQCAMGKQAIGIYVSNFNKRMDKTAYVLNYTMRPLVETRV 757

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            M  +   +LP G   IVAI  +SGYNQEDSV++N+ S+DRG F +  + + +DE+KK+  
Sbjct: 758  MNMMKLNELPCGNQVIVAIMTHSGYNQEDSVLINKGSLDRGLFHATIYHTEKDEDKKING 817

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 893
              +E   +P+ + T  M+ G+YDK++  G+      +  +D+II K   I +D       
Sbjct: 818  -EEELRIKPNPNLTRNMKFGNYDKINKMGVMNENEIIEDKDIIISKVVVI-KDHKNDNTK 875

Query: 894  RYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
                 D S S R +E   VD+  +  N DG  F KVR+R++R P IGDKFSSRHGQKGTV
Sbjct: 876  LVKYEDQSKSYRTTEECYVDKTYIDRNGDGYTFCKVRIRAMRKPNIGDKFSSRHGQKGTV 935

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            G    ++DMP+T EG+ PDII+NPHAIPSRMTI QL E ++GK+   +G  GD T F ++
Sbjct: 936  GNIIEEQDMPFTKEGVRPDIIINPHAIPSRMTIAQLKETLVGKLLLKLGLFGDGTSFGEM 995

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
             ++ + K L K  Y+ +G E +Y+G TG ++   IF+GP YYQRLKHMV+DK HSR  GP
Sbjct: 996  DMNEVYKELQKHNYESKGNEVLYDGKTGEQIKTSIFIGPVYYQRLKHMVNDKQHSRCIGP 1055

Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA 1133
            +  LTRQPAEGRSRDGGLRFGEMERDCMI+HGAS F KER++D SD Y V+VC+ CG+IA
Sbjct: 1056 MVNLTRQPAEGRSRDGGLRFGEMERDCMISHGASKFTKERIYDVSDKYAVNVCKKCGMIA 1115

Query: 1134 IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            + N K++   C  C+N+TD   V IPY+CKLLFQEL+ M I PR++T
Sbjct: 1116 VYNDKEHIHICNVCENRTDFSYVKIPYSCKLLFQELITMNIVPRIMT 1162


>gi|386801236|gb|AFJ39282.1| RNA polymerase II second largest subunit, partial [Pleurotus
            pulmonarius]
          Length = 687

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/689 (64%), Positives = 538/689 (78%), Gaps = 29/689 (4%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KR D AGPLL  LFRMLFR+LT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRSDPAGPLLSILFRMLFRQLTKDVYGYLQKCVETHKEFNLHLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSISAPVIEFLEEWGLESLEENAHSSIP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKTL++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGVHRDPANLVKTLKKLRRKDDISPEVSVVRDIREKELRVYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDIIALQQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            +LL++K+ +  L Q  + +D G    W  L+  G IE +D EEEET MISMT  DL  +R
Sbjct: 241  QLLLQKKHVRWLNQ--TVDDAGEPFKWDGLIRSGVIEMLDAEEEETVMISMTPEDLENSR 298

Query: 693  LH-------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
            L                        +A T+TH EI  S+ILG+CASIIPFPDHNQSPRNT
Sbjct: 299  LQHAGVDTRVNDGEYDPAARLKASTHAHTWTHAEITRSMILGICASIIPFPDHNQSPRNT 358

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI 
Sbjct: 359  YQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 418

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG
Sbjct: 419  CYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHG 478

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGM 911
            +YDKL++DGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+
Sbjct: 479  TYDKLENDGLIAPGTGVVGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGI 538

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VDQVL+TTN +G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI P
Sbjct: 539  VDQVLITTNHEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVP 598

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG
Sbjct: 599  DIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSAFLRQKGYQSRG 658

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             E MY+GHTGR+L A ++LGPTYYQRLKH
Sbjct: 659  LEVMYHGHTGRKLQAQVYLGPTYYQRLKH 687


>gi|110669610|gb|ABG81900.1| RNA polymerase II second largest subunit [Hypocenomyce scalaris]
          Length = 708

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/711 (62%), Positives = 545/711 (76%), Gaps = 46/711 (6%)

Query: 399  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 458
            RLD  GPLL GLFRMLF KL RDV  Y++KCV+N ++ NL   +K+ T T+GLKYSLATG
Sbjct: 1    RLDSCGPLLAGLFRMLFNKLARDVAKYLEKCVENNREFNLTLGVKSTTPTNGLKYSLATG 60

Query: 459  NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 517
            NWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 61   NWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 120

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+FVNG
Sbjct: 121  AETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPQRSPNATKVFVNG 180

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE--- 634
             WVG+HRDP  LV T++ LRR   ++ EV +VRDIR +E +I+TD GR  RPLF++    
Sbjct: 181  VWVGVHRDPAHLVSTVQNLRRNHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVINNDP 240

Query: 635  ----KQRLLIKKRDIIALQ-----------QRESPEDGGWHDLVAKGFIEYIDTEEEETT 679
                K  L++ K  +  L+           + ++ +  GW  LV +G +EY+D EEEET 
Sbjct: 241  KSPNKGNLVLTKEHVNRLEDDKELGADMDAEEKAAKFMGWEGLVNQGVVEYVDAEEEETV 300

Query: 680  MISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSLILGVC 717
            MI MT  DL                      V+A ++P    A T+THCEIHPS+ILG+C
Sbjct: 301  MIVMTPEDLEISRQLQAGYVIQESTDDPNKRVKAPMNPT---AHTWTHCEIHPSMILGIC 357

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY+ RMDT+A +LYYPQKPL TTR+ME L
Sbjct: 358  ASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFL 417

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
             FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E
Sbjct: 418  KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVE 477

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 895
             F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ +
Sbjct: 478  QFEKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLH 537

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
             +RD S  LR +E+G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 538  VKRDVSTPLRSTESGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 597

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1015
            TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV
Sbjct: 598  TYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTV 657

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            D++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 658  DSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 708


>gi|103001677|gb|ABF71517.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 704

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/707 (62%), Positives = 542/707 (76%), Gaps = 46/707 (6%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ TIT+GLKYS
Sbjct: 1    FGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTITNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+
Sbjct: 121  LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKV 180

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181  FVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 634  EKQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEE 675
            +          L++ K         +D+ A+   E  E    GW  LV  G +EY+D EE
Sbjct: 241  DNDPKSTNCGNLVLTKEHINKLEDDKDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEE 300

Query: 676  EETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSLI 713
            EET MI MT  DL                      V+A ++P    A T+THCEIHPS+I
Sbjct: 301  EETVMIVMTPEDLEISRQIQAGYAMPETSDDPNKRVKAPMNPT---AHTWTHCEIHPSMI 357

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+
Sbjct: 358  LGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRS 417

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G 
Sbjct: 418  MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGM 477

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 892
             V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 478  SVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQR 537

Query: 893  SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
            ++ + +RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 538  TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 597

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T+G+TY QEDMP+T+EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 598  TIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 657

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 1058
            +VTVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL
Sbjct: 658  EVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRL 704


>gi|55273995|gb|AAV48868.1| RNA polymerase II second largest subunit [Calostoma cinnabarinum]
          Length = 680

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/681 (65%), Positives = 535/681 (78%), Gaps = 26/681 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +   +AGVSQVLNR TYASTLSHLRR N+P+GREG +AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKSMAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGXIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIALQQ---RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
             Q+L+++K+ I  L Q    E+ E+  W  LV  G +E +D EEEET MISMT  DL  +
Sbjct: 240  NQQLVLQKKHIQWLSQGYRDEANEEFKWEHLVKNGIVELLDAEEEETVMISMTPEDLENS 299

Query: 692  RL-----HPEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
            RL     +P E                A T+THCEIHPS+ILGVCASIIPFPDHNQSPRN
Sbjct: 300  RLQSAGINPYENDGEYDPTARLKARTSAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRN 359

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 360  TYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 419

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
             CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+H
Sbjct: 420  MCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDMEKKSGVQQLEEFEKPTRDTTLRMKH 479

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQASR-YTRRDHSISLRHSETG 910
            G+YDKL++DGL  PGT V GED+IIGKT PI  + E  GQ +R +TRRD S  L+ +E G
Sbjct: 480  GTYDKLEEDGLIAPGTGVQGEDIIIGKTAPIPPESEELGQRTRTHTRRDVSTPLKSTEKG 539

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
             +DQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI+
Sbjct: 540  TIDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIS 599

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S  L + GYQ R
Sbjct: 600  PDIIINPHAIPSRMTIGHLVECLLSKVATLLGNEGDATPFTELTVESVSSFLRQKGYQSR 659

Query: 1031 GFETMYNGHTGRRLTAMIFLG 1051
            G E MY+GHTGR+L A I+LG
Sbjct: 660  GLEVMYHGHTGRKLQAQIYLG 680


>gi|83415495|gb|ABC17955.1| RNA polymerase II second largest subunit precursor, partial
            [Spiromyces aspiralis]
          Length = 1058

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/696 (63%), Positives = 538/696 (77%), Gaps = 26/696 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KR+DLAGPLL  LFR LFRK+T+DV  Y+QKC+DN ++     AIK+ TIT+GLKYSLAT
Sbjct: 2    KRMDLAGPLLAMLFRNLFRKMTKDVTRYMQKCIDNDREFRPNIAIKSTTITTGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  A  +RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGIVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM ++T+  +A PI +FL +WG EN EE+    I  ATKIFVN
Sbjct: 122  PAETPEGQACGLVKNLALMAHVTISCSAQPIHDFLNDWGMENLEELQVTSIADATKIFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+GIHR+   LV  LR++RR   ++ ++ +VRDIR KELRIYTD GR  RPLF+VE  
Sbjct: 182  GVWLGIHREANKLVPQLRQMRRETSLSFDISIVRDIREKELRIYTDEGRVCRPLFVVEDL 241

Query: 637  RLLIKK----RDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
            RL +      R I   +     E  GW  L++ G +EY+D EEEET MI MT ++L ++ 
Sbjct: 242  RLKVTNDHINRLIELNEIGGGEEGEGWQMLISDGVVEYLDAEEEETAMICMTPDELRESY 301

Query: 693  LH-------PEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
             +       P E             Y +T+THCEIHPS+ILG+CASIIPFPDHNQSPRNT
Sbjct: 302  EYHQTGVEPPMEVDPSFRIRSRRNIYINTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 361

Query: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
            YQSAMGKQAMG+ +TNYQ RMDTL+ VLYYPQKPL  TRAM++L FRQLPAG NAIVAI 
Sbjct: 362  YQSAMGKQAMGVMLTNYQLRMDTLSNVLYYPQKPLAITRAMDYLKFRQLPAGQNAIVAIL 421

Query: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
            CYSGYNQEDS+IMNQSSIDRG FRSLFFR+Y+DEE + G+     F +P R  T+ ++HG
Sbjct: 422  CYSGYNQEDSIIMNQSSIDRGLFRSLFFRTYQDEENREGSAHVGRFEKPTRETTLRLKHG 481

Query: 854  SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YTRRDHSISLRHSETGM 911
            +Y+KLD+DGL  PGTRV G+D+IIGKTTPI  D  + GQ ++ +T+ D S  LR +E G+
Sbjct: 482  TYEKLDEDGLVAPGTRVVGDDIIIGKTTPIPADSLELGQRTKNHTKLDASKPLRSTEHGI 541

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            VD+V+LTTNADG+RFVKVRVRS R+PQIGDKF+SRHGQKGTVGMTY  EDMP+T EGI P
Sbjct: 542  VDRVMLTTNADGIRFVKVRVRSTRVPQIGDKFASRHGQKGTVGMTYRTEDMPFTAEGIVP 601

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            D+I+NPHAIPSRMTIG LIEC++ K++  +G++GDATPFTDVTV+ IS+ LH  GY  RG
Sbjct: 602  DLIINPHAIPSRMTIGHLIECLLSKLSTLLGQDGDATPFTDVTVEAISRELHSRGYHPRG 661

Query: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
            FE MYNGHTGR+L A +FLGPTY QRLKHMVDDKIH
Sbjct: 662  FEVMYNGHTGRKLAAQVFLGPTYXQRLKHMVDDKIH 697


>gi|110704328|gb|ABG88064.1| RNA polymerase II second largest subunit [Microbotryum violaceum]
          Length = 699

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/700 (63%), Positives = 537/700 (76%), Gaps = 28/700 (4%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFRMLFRKLT+DV  ++QKCV+  K  NL  A+++ TIT+GLKYS
Sbjct: 1    FGAKRLDLAGPLLAALFRMLFRKLTKDVYRHLQKCVETQKSFNLNTAVRSNTITNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  A   +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQKKAMSAKAGVSQVLNRYTFASTLSHLRRCNAPIGRDGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            M+CPAETPEGQACGLVKNLALM YI+VGS + PI+EFLEEWG EN EE S + + + TK+
Sbjct: 121  MVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEWGMENLEEFS-SEMSKGTKV 179

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG W G+HRDP  LV+T++RLRR  D+  EV VVRD+R +ELR++TD GR  RPLFIV
Sbjct: 180  FVNGVWQGVHRDPAHLVQTIKRLRRCGDIAYEVSVVRDVRERELRLHTDAGRVCRPLFIV 239

Query: 634  EKQRLLIKKRDIIALQQRES---PEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            E  RL++ +  I ALQ  +S   P++    W DL+  G +EY+D EEEET MI MT  DL
Sbjct: 240  EDHRLVLTRHHIDALQNEDSEDRPDEKRLKWTDLIETGVVEYVDAEEEETVMICMTPEDL 299

Query: 689  VQARLHPEEAY-------------------ADTYTHCEIHPSLILGVCASIIPFPDHNQS 729
              +RL  E                        T+THCEIHPS+ILG+CASIIP      S
Sbjct: 300  ETSRLFQETGQIQVDTFDPSATVKGSMGVNTHTWTHCEIHPSMILGICASIIPXXXXXXS 359

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMG+++TNYQ RMDT+A VLYYPQKPL TTR+ME+LHFR+LPAG NAI
Sbjct: 360  PRNTYQSAMGKQAMGVFLTNYQVRMDTMANVLYYPQKPLATTRSMEYLHFRELPAGQNAI 419

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI CYSGYNQEDSVI+NQSSIDRG FRS ++RSY D+EKK G +  E+F +P R  T+ 
Sbjct: 420  VAIMCYSGYNQEDSVILNQSSIDRGLFRSFYYRSYMDQEKKSGAIQMEEFEKPTRDTTLR 479

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ-ASRYTRRDHSISLRHS 907
            ++HG+Y+KL+ DG+   G RV+GED+IIGKT P+  D E  GQ    +T+RD S  L+ +
Sbjct: 480  LKHGTYEKLEADGIIGLGERVAGEDIIIGKTAPLPPDSEELGQRLKNHTKRDVSTPLKST 539

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E G+VDQVL+TTN DGL+FVK+RVRS RIP+IGDKF+SRHGQKGT+G+TY  EDMP++ E
Sbjct: 540  ENGIVDQVLVTTNQDGLKFVKIRVRSTRIPEIGDKFASRHGQKGTIGITYRHEDMPFSAE 599

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            G  PDII+NPHAIPSRMTIG L+EC++ KV+   G EGDATPF++VTV+ IS  L + GY
Sbjct: 600  GTIPDIIINPHAIPSRMTIGHLVECLLSKVSTISGNEGDATPFSEVTVEAISTLLKEMGY 659

Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067
              RG E MYNGHTGR+L A ++LGPTYYQRLKHMV+DKIH
Sbjct: 660  HSRGLEVMYNGHTGRKLQAQVYLGPTYYQRLKHMVNDKIH 699


>gi|119644004|gb|ABL85600.1| RNA polymerase II second largest subunit [Lecidea fuscoatra]
          Length = 707

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/710 (62%), Positives = 544/710 (76%), Gaps = 47/710 (6%)

Query: 401  DLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNW 460
            DLAGPLL GLFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ T+T+GLKYSLATGNW
Sbjct: 1    DLAGPLLAGLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTLTNGLKYSLATGNW 60

Query: 461  G-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAE 519
            G Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAE
Sbjct: 61   GDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAE 120

Query: 520  TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 579
            TPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+FVNG W
Sbjct: 121  TPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPLRSPNATKVFVNGVW 180

Query: 580  VGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE----- 634
            VG+HRDP  LV T+  LRR   ++ EV +VRDIR +E +I+TD GR  RPLF+++     
Sbjct: 181  VGVHRDPAHLVSTVLSLRRHHMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKS 240

Query: 635  --KQRLLIKKRDIIALQQ-RE-----SPEDG-----GWHDLVAKGFIEYIDTEEEETTMI 681
              +  L++ K  +  L+  RE      PED      GW  LV +G +EY+D EEEET MI
Sbjct: 241  SNRGNLVLTKEHVQKLEDDREIIASTDPEDRVAKFMGWEGLVHQGVVEYVDAEEEETVMI 300

Query: 682  SMTINDL-----------------------VQARLHPEEAYADTYTHCEIHPSLILGVCA 718
             MT  DL                       V+A L+P    A T+THCEIHPS+ILG+CA
Sbjct: 301  VMTPEDLEISRQIQAGFVLPDPSIDDPNKRVKAPLNPT---AHTWTHCEIHPSMILGICA 357

Query: 719  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 778
            SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L 
Sbjct: 358  SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLK 417

Query: 779  FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 838
            FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E+
Sbjct: 418  FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVEE 477

Query: 839  FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYT 896
            F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D  E   +   + 
Sbjct: 478  FEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGLRTKLHM 537

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T
Sbjct: 538  KRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 597

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD
Sbjct: 598  YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVD 657

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            ++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 658  SVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 707


>gi|103001922|gb|ABF71527.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            flavum]
          Length = 701

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/701 (63%), Positives = 538/701 (76%), Gaps = 40/701 (5%)

Query: 404  GPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-Q 462
            GPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSLATGNWG Q
Sbjct: 1    GPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSLATGNWGDQ 60

Query: 463  ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE 522
              AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPE
Sbjct: 61   KKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 120

Query: 523  GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI 582
            GQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+
Sbjct: 121  GQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGV 180

Query: 583  HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ------ 636
            HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++        
Sbjct: 181  HRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNC 240

Query: 637  -RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMT 684
              L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEEET MI MT
Sbjct: 241  GNLVLTKEHINKLEDDRDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMT 300

Query: 685  INDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFPD 725
              DL     +QA     EA  D              T+THCEIHPS+ILG+CASIIPFPD
Sbjct: 301  PEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPD 360

Query: 726  HNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 785
            HNQSPRNTYQS MGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG
Sbjct: 361  HNQSPRNTYQSXMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAG 420

Query: 786  INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS 845
             NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P RS
Sbjct: 421  QNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMRS 480

Query: 846  NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSIS 903
            +T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ + +RD S  
Sbjct: 481  DTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLHVKRDVSTP 540

Query: 904  LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
            LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP
Sbjct: 541  LRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMP 600

Query: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH 1023
            +T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L 
Sbjct: 601  FTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLR 660

Query: 1024 KCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDD 1064
            + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDD
Sbjct: 661  EHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDD 701


>gi|110169467|gb|ABG53986.1| RNA polymerase II second largest subunit, partial [Exobasidium
            gracile]
          Length = 705

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/707 (63%), Positives = 547/707 (77%), Gaps = 28/707 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL GLFRMLF+KLTRD+  ++Q+CV+  K+  LQ A+K+ TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLSGLFRMLFKKLTRDIYRHLQRCVEESKEFTLQAAVKSSTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q      +AGVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKFMSAKAGVSQVLNRYTYASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNL+LM  I+VGS + PI+EFLEE+G ++  ++  A   +ATK+F
Sbjct: 121  VCPAETPEGQACGLVKNLSLMSMISVGSPSGPIIEFLEEYGLDSLVDMQIADA-KATKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV- 633
            VNG W+G    P  LV+TLR LRR+ D++ EV VV DIR KELR+YTD GR  RPLFIV 
Sbjct: 180  VNGVWMGTCDTPTGLVETLRDLRRKDDISIEVSVVHDIREKELRLYTDAGRVQRPLFIVN 239

Query: 634  -EKQRLLIKKRDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 690
             E + L +K + +  ++ +E P+    GW  LV  G IE +D EEEET MI M+  DL  
Sbjct: 240  PEDKTLYVKPKHVNWIETQERPDGSPYGWSQLVRDGLIELLDAEEEETVMICMSPQDLES 299

Query: 691  ------------------ARLHPEEAYA-DTYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
                              ARL P + YA  T+THCEIHP++ILGVCASIIPFP   QSPR
Sbjct: 300  SRMYNENPDSIKLSGDPTARLVPVQTYAPSTWTHCEIHPAMILGVCASIIPFPP-XQSPR 358

Query: 732  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
            N YQSAMGKQAMG+Y+TNYQ RMDT+A +LYYPQKPL TT +M +L FR+LPAG NAIVA
Sbjct: 359  NVYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLATTHSMHYLKFRELPAGQNAIVA 418

Query: 792  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 851
            I CYSGYNQEDSVIMNQSSIDRG FRSL++R++ D EKK G ++ E+F +P R   + ++
Sbjct: 419  ILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTHMDMEKKTGMILLEEFEKPSRETAVRLK 478

Query: 852  HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSET 909
            HG+YDK+D DG   PGTRVSGED+IIGKTTP+  D E  G  S+ +T++D S  L+ +E 
Sbjct: 479  HGTYDKIDADGFCAPGTRVSGEDIIIGKTTPLPPDSEELGLRSKLHTKKDVSTPLKSTEN 538

Query: 910  GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
            G+VDQVL++TNA+G +FVKVR+RS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T+EG+
Sbjct: 539  GIVDQVLVSTNAEGNKFVKVRIRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTIEGV 598

Query: 970  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1029
            TPDII+NPHAIPSRMTIG L+EC++ KV A  G+EGDATPFTD+TV+ +S  L + GYQ 
Sbjct: 599  TPDIIINPHAIPSRMTIGHLVECLLSKVGALSGQEGDATPFTDLTVEAVSHQLRQHGYQS 658

Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
            RG E MYNGHTG++L A ++LGPTYYQRLKHMVDDKIHSR RGPVQI
Sbjct: 659  RGLEVMYNGHTGKKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQI 705


>gi|88601070|gb|ABD46531.1| RNA polymerase II second largest subunit, partial [Punctularia
            strigosozonata]
          Length = 701

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/702 (63%), Positives = 539/702 (76%), Gaps = 42/702 (5%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QK ++ GK  NL  A+K  TIT+
Sbjct: 1    DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKSIETGKQFNLSLAVKHNTITN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P
Sbjct: 121  NTHWGMVCPAETPEGQACGLVKNLSLMATISVGSISAPVIEFLEEWGLESLEENAHSSTP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
              TK+FVNG W+G+HRDP  LVKT+++LRR+ +++ E  VVRDIR +ELRI TD GR  R
Sbjct: 181  -CTKVFVNGVWMGVHRDPLNLVKTIKKLRRKDNISPETSVVRDIRERELRISTDAGRVCR 239

Query: 629  PLFIVEKQRLLIKKRDIIALQQRESP---EDGG----------------WHDLVAKGFIE 669
            PLFIVE Q+L++KK  I  L +  +    +D G                + +LV +G IE
Sbjct: 240  PLFIVENQQLVLKKSHIEKLHKHNTEPVLDDAGAPTFDENGKQRFFQYQFDELVKEGVIE 299

Query: 670  YIDTEEEETTMISMTINDLVQARLH-----PEE--------------AYADTYTHCEIHP 710
            Y+D EEEET MI MT  DL  ARL      P +                A  +THCEIHP
Sbjct: 300  YLDAEEEETVMICMTPEDLENARLKQQGHDPSQDDPDFDPAARIKTGTQAHLWTHCEIHP 359

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL T
Sbjct: 360  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLAT 419

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS++FRSY D EKK
Sbjct: 420  TRSMEYLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSMYFRSYMDMEKK 479

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
             G    E+F +P R  T+ M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  
Sbjct: 480  SGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEEL 539

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ +R +TRRD S  L+ +E G VDQVL+TTN++G +FVKVR+RS RIPQIGDKF+SRHG
Sbjct: 540  GQRTRGHTRRDVSTPLKSTEQGTVDQVLITTNSEGQKFVKVRIRSTRIPQIGDKFASRHG 599

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDAT
Sbjct: 600  QKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDAT 659

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFL 1050
            PFTD+TV+++S+ L + GYQ RG E MY+GHTGR+L A I+L
Sbjct: 660  PFTDLTVESVSQFLRQRGYQSRGLEVMYHGHTGRKLQAQIYL 701


>gi|396941963|gb|AFN89698.1| RNA polymerase II, partial [Saitoella complicata]
          Length = 727

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/729 (60%), Positives = 547/729 (75%), Gaps = 46/729 (6%)

Query: 305 MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
           ++LL+P LEEA VI  + +ALDYIG+RG    + R+KR++YA +I+QKE+LPH+ T    
Sbjct: 1   LDLLKPCLEEADVILEKDLALDYIGRRGNNPQMGREKRLRYAHDIMQKELLPHITTSVGF 60

Query: 365 ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
           E +KA++ GY+ HRLLLCAL RR +DDRDH+G KRLDLAGPLLGGLFRMLF+KL+RDV  
Sbjct: 61  ENRKAFFLGYMCHRLLLCALERRDQDDRDHFGKKRLDLAGPLLGGLFRMLFKKLSRDVYK 120

Query: 425 YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
           Y+QKCV+ GK+ N    +K  TIT GLKYSLATGNWG QA     R GVSQVLNR T+AS
Sbjct: 121 YMQKCVETGKEFNAAAGMKTSTITQGLKYSLATGNWGDQAKGLANRVGVSQVLNRYTFAS 180

Query: 484 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
           TLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM YI+V   
Sbjct: 181 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYISVSRP 240

Query: 544 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
           +  I+E L  WG E FE+ S   +P AT+IF+NG W+G+HRDP +LV  LR +RR  ++ 
Sbjct: 241 SAQIIENLNNWGIEGFEQYSANAVPDATRIFLNGVWLGVHRDPSILVNALRDMRRTAEIP 300

Query: 604 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIA---------------- 647
            +V VVRDIR +E+RI+TD GR  RPLFIV  +    +  D++                 
Sbjct: 301 VDVSVVRDIREREVRIFTDAGRVMRPLFIVNNEEPSEENGDLVITHNHVERIRESKYNAD 360

Query: 648 --LQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL-----VQARLHPEE--- 697
             ++  E+P D  WH LV +G +EYID EEEET MI+MT  DL     V+A   P +   
Sbjct: 361 NDIETNEAPYD--WHSLVREGCVEYIDAEEEETCMIAMTTEDLDWAKAVKAGWEPAKEKQ 418

Query: 698 -----------AYAD----TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742
                       YA     TYTHCEIHPS+ILGVCASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 419 QDQSAVGERLKTYASKHQQTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 478

Query: 743 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802
           MGI+++N+Q RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI  YSGYNQED
Sbjct: 479 MGIFLSNFQTRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILVYSGYNQED 538

Query: 803 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862
           SVIMNQSSIDRG FRSL++RS+ D EKK G    E+F +P R  T+ M+HG+YDKL+DDG
Sbjct: 539 SVIMNQSSIDRGLFRSLYYRSHVDAEKKAGMQTVEEFEKPTRQTTLRMKHGTYDKLEDDG 598

Query: 863 LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTN 920
              PGTRVSGED+I+GKT PI+ D E  GQ +R +++RD S+ L+ +E G+VDQV +TTN
Sbjct: 599 FVAPGTRVSGEDIIVGKTAPIAPDSEELGQRTRLHSKRDVSMPLKSTENGIVDQVAVTTN 658

Query: 921 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
           A+G++FVKVRVRS R+PQIGDKF+SRHGQKGT+G+TY  EDMP+T EG+TPDII+NPHAI
Sbjct: 659 AEGMKFVKVRVRSTRVPQIGDKFASRHGQKGTIGITYRHEDMPFTAEGVTPDIIINPHAI 718

Query: 981 PSRMTIGQL 989
           PSRMT+  L
Sbjct: 719 PSRMTVAHL 727


>gi|110704333|gb|ABG88065.1| RNA polymerase II second largest subunit [Microstroma juglandis]
          Length = 716

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/717 (61%), Positives = 545/717 (76%), Gaps = 47/717 (6%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDL GPLL GLFRMLFRKLTRD+  ++QKCV+  ++ +L  A+K+ TIT+GL+
Sbjct: 1    DHFGKKRLDLGGPLLAGLFRMLFRKLTRDIYRHLQKCVEEQREFHLTAAVKSSTITNGLR 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q      +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNL+LM  I+VGS + P+ +FL+E+G +N  ++  +   +AT
Sbjct: 121  WGMVCPAETPEGQACGLVKNLSLMSLISVGSPSAPLHQFLDEFGLDNLVDMQVSAA-KAT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W G H +P  LV+TLR LRR+ D+ TEV VV D+R KELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWAGTHNEPSALVETLRDLRRKDDITTEVSVVHDVREKELRLYTDSGRVLRPLF 239

Query: 632  IVEKQ--RLLIKKRDIIALQQRESP----------------EDGGWHDLVAKGFIEYIDT 673
            IV+ +  RLLI +  I  L   E P                E   W  LVA+G IEY+D 
Sbjct: 240  IVDPKSMRLLITREHIQWLNADEKPGGMLDETNMEPDEDERERFQWSQLVAEGVIEYLDA 299

Query: 674  EEEETTMISMTINDLVQ------------------------ARLHPEEAY-ADTYTHCEI 708
            +EEET MISM+  DL +                        ARL     Y   T+THCEI
Sbjct: 300  DEEETVMISMSPQDLAKSRRLQRTGLITGEANGLDGLPDASARLVSSRYYEPSTWTHCEI 359

Query: 709  HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 768
            HP++ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ RMDT+A +LYYPQKPL
Sbjct: 360  HPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPL 419

Query: 769  VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE 828
             TTR+MEHL+FR+LPAG NAIVAI CYSGYNQEDSVI+NQSSIDRG FRSL++R+Y D E
Sbjct: 420  ATTRSMEHLNFRELPAGQNAIVAILCYSGYNQEDSVILNQSSIDRGLFRSLYYRTYTDFE 479

Query: 829  KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-E 887
            KK+G  ++E+F +P R   + ++HG+YDK+D DGL  PGTRVSGED+IIGKT P+  D E
Sbjct: 480  KKVGFTLQEEFEKPVRDTAIRLKHGTYDKIDADGLVAPGTRVSGEDIIIGKTAPLPPDSE 539

Query: 888  AQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 946
              G  S+ +T+RD S  L+ +E+G+VDQVL++TN +G +FVKVRVRS R+PQ GDKF+SR
Sbjct: 540  ELGLRSKTHTKRDVSTPLKSTESGIVDQVLVSTNQEGSKFVKVRVRSTRVPQTGDKFASR 599

Query: 947  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
            HGQKGT+G+TY QEDMP+T+EG+TPDII+NPHAIPSRMTIG L+EC++ KVA   G+EGD
Sbjct: 600  HGQKGTIGITYRQEDMPFTIEGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGD 659

Query: 1007 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            ATPFTD+TV+ +S  L K GYQ RG E MYNGHTGR+L A ++LGPTYYQRLKHMVD
Sbjct: 660  ATPFTDLTVEAVSSILAKLGYQKRGLEIMYNGHTGRKLQAQVYLGPTYYQRLKHMVD 716


>gi|113957834|gb|ABI49125.1| RNA polymerase II second largest subunit [Megalospora tuberculosa]
          Length = 718

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/718 (62%), Positives = 544/718 (75%), Gaps = 41/718 (5%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFR LF KL++D+  Y+QKCV++ ++ NL   +K  T+TS
Sbjct: 1    DDRDHFGKKRLDLAGPLLATLFRTLFSKLSKDIYKYLQKCVESNREFNLTLGVKQNTLTS 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGEQKKAAQSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM YI+VGS A PI+++L + G E  EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCYISVGSPAEPIVDYLIQRGMEILEEYEPTRSP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATK+FVNG WVG+H DP +LV  ++ LRR   +  E  +VRDIR +E +I+TD GR  R
Sbjct: 181  NATKVFVNGVWVGVHHDPALLVSNVQELRRTNIIPHEASLVRDIRDREFKIFTDAGRVCR 240

Query: 629  PLFIVEKQ-------RLLIKK---------RDI-IALQQRESPEDG-GWHDLVAKGFIEY 670
            PLF+V           L++ K         RD+ IA+   E      GW  LV    I+Y
Sbjct: 241  PLFVVNNDFKSDNAGSLVLTKEMVQKVEDERDVVIAMDPEERAGTSIGWQGLVYARAIQY 300

Query: 671  IDTEEEETTMISMTINDL-----VQARLHPEEAYAD---------------TYTHCEIHP 710
            +D EEEET MI MT  DL     VQA     +  AD               T+THCEIHP
Sbjct: 301  VDAEEEETIMIVMTPEDLEISRQVQAGYDAPQPSADAPNSRVKAAVNPTAHTWTHCEIHP 360

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL T
Sbjct: 361  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLAT 420

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y + EK+
Sbjct: 421  TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVNTEKR 480

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
            +G  V E F +P RS T+ ++HG+YDKLD+DGL  PG RVSG+DVIIGKTTPI+ D E  
Sbjct: 481  VGMQVLESFEKPLRSETLKLKHGTYDKLDNDGLVAPGVRVSGDDVIIGKTTPIAPDAEEM 540

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ ++ + ++D S  LR +E G+VD+VLL+TN++GL+FVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541  GQRTKAHIKKDASTPLRSTENGIVDRVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHG 600

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP+T EG+ PDII+NPHAIPSRMTI  LIEC + KV++  G EGDAT
Sbjct: 601  QKGTIGITYRQEDMPFTSEGMVPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDAT 660

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            PFT++TVD++S  L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661  PFTEITVDSVSNLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718


>gi|52699774|gb|AAU86949.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            complanata]
          Length = 730

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/731 (61%), Positives = 548/731 (74%), Gaps = 60/731 (8%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YI+VG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQRNMEVLEEYEPQRSPNAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG+H DP  LV T++ +RR   ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181  KVFVNGVWVGVHSDPVHLVNTVQAVRRGHMISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVEKQ-------RLLIKKRDIIALQQRE--SPE-----------------DG---GWHDL 662
            +++          L++ K  I  L+  +  S E                 DG   GW+ L
Sbjct: 241  VIDNDPKSPRCGNLVLTKEHINKLEDYKDLSAEMQEKIREKEEVEKEVKEDGTPYGWNGL 300

Query: 663  VAKGFIEYIDTEEEETTMISMTINDL-------------------------VQARLHPEE 697
            + +G +EY+D EEEET MI MT  DL                         V+A ++P  
Sbjct: 301  IKRGVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYVLPEPSNTSEALMKRVKAPMNPT- 359

Query: 698  AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
              A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMG QAMG    NY+ RMDT+
Sbjct: 360  --AHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGXQAMGXXXXNYEQRMDTM 417

Query: 758  AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
            A +LYYPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FR
Sbjct: 418  ANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 477

Query: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
            SLF+RSY D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+II
Sbjct: 478  SLFYRSYTDQEKRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIII 537

Query: 878  GKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
            GKT PI+ D E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +
Sbjct: 538  GKTAPIAPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTK 597

Query: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
            IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + 
Sbjct: 598  IPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLS 657

Query: 996  KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
            KV++  G EGDATPFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYY
Sbjct: 658  KVSSLRGFEGDATPFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 717

Query: 1056 QRLKHMVDDKI 1066
            QRL+HMVDDKI
Sbjct: 718  QRLRHMVDDKI 728


>gi|88976107|gb|ABD59032.1| RNA polymerase II second largest subunit, partial [Cantharocybe
            gruberi]
          Length = 675

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/675 (65%), Positives = 534/675 (79%), Gaps = 25/675 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q
Sbjct: 181  GVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQ 240

Query: 637  RLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARL- 693
            +L ++K+ I  L Q   +  ED  W  LV  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241  QLALQKKHIKWLNQGYNDEGEDFKWEQLVKGGIIELLDAEEEETVMISMTPEDLENSRLQ 300

Query: 694  ------HPEEA------------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
                  H  +             +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301  HQGVDPHANDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361  SAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421  SGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPLRDNTLRMKHGTY 480

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 913
            DKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+VD
Sbjct: 481  DKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVD 540

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD+
Sbjct: 541  QVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDL 600

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            I+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601  IINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLE 660

Query: 1034 TMYNGHTGRRLTAMI 1048
             M++GHTGR+L A +
Sbjct: 661  VMFHGHTGRKLQAQV 675


>gi|52699786|gb|AAU86955.1| DNA-dependent RNA polymerase II second largest subunit [Baeomyces
            placophyllus]
          Length = 717

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/715 (61%), Positives = 543/715 (75%), Gaps = 41/715 (5%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH   KRLDLAGPL+ GLFRMLF KL +DV  Y++KCV++ ++ NL   +K+ T+T+GLK
Sbjct: 1    DHXXXKRLDLAGPLMAGLFRMLFNKLVKDVYNYLKKCVESNREFNLSLGVKSTTLTNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNL+LM YITVG+   PI++F+ +   E  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLSLMCYITVGTPNEPIIDFMIQRSMEVLEEYEPTRSPNAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VR+IR +E +I+TD GR  RPLF
Sbjct: 181  KVFVNGVWVGVHRDPAHLVSTVQSLRRRSLISHEVSLVREIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVE-------KQRLLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEYIDT 673
            ++E       K  L++ K  +  L+  ++ P D           GW  LV  G +E++D 
Sbjct: 241  VIENDAKKANKGSLVLTKELVNRLEDDKDIPTDLDPDERAARYFGWDGLVKSGAVEFLDA 300

Query: 674  EEEETTMISMTINDLVQARLH--------------------PEEAYADTYTHCEIHPSLI 713
            EEEET MI MT  DL  +R                      P +A + T+THCEIHPS+I
Sbjct: 301  EEEETVMIVMTPEDLEISRQLQMGYTMPSSSNVDPNSRIKVPIKASSHTWTHCEIHPSMI 360

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LG+CASIIPFPDHNQSPRNTYQSAMG QAMG+ +TNY  RMDT+A +LYYPQKPL TTR+
Sbjct: 361  LGICASIIPFPDHNQSPRNTYQSAMGXQAMGVXLTNYDERMDTMANILYYPQKPLATTRS 420

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLFFR+Y D+EK++G 
Sbjct: 421  MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYTDQEKRIGM 480

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 892
             V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 481  SVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEEMGQR 540

Query: 893  SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
            ++ + +RD S  LR +E G+VD+VLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 541  TKLHIKRDVSTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 600

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T+G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 601  TIGITYRMEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 660

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            +VTVD+IS  L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI
Sbjct: 661  EVTVDSISNLLREHGYQSRGFEIMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKI 715


>gi|55140709|gb|AAQ01541.2| RNA polymerase II second largest subunit [Crepidotus cf. applanatus
            PBM 717]
          Length = 688

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/688 (64%), Positives = 538/688 (78%), Gaps = 26/688 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  KD N+ FA+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKDFNVAFAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+PIGREGK+AKPRQLHN       
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPIGREGKIAKPRQLHNXXXXXXX 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
             AETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122  XAETPEGQACGLVKNLALMSCISVGSFSGPVIEFLEEWGLESLEENAHSSTP-FTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRD   LVKTL+RLRRR D++TEV VVRDIR +E+R+YTD GR  RPLFIVE Q
Sbjct: 181  GVWIGVHRDAANLVKTLKRLRRRDDISTEVSVVRDIREREMRVYTDAGRVCRPLFIVEDQ 240

Query: 637  RLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 694
            +L+++K+ I  L     +  ++  W  LV  G IE +D EEEET MISMT  DL  +RL 
Sbjct: 241  QLVLQKKHIRWLNNGVDDEGQEFKWEQLVKTGVIELLDAEEEETVMISMTPEDLENSRLQ 300

Query: 695  -----PEE---------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
                 P+                 +A T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTY
Sbjct: 301  QRGIDPQANNDGEYDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 360

Query: 735  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
            QSAMG+QAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 361  QSAMGEQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILC 420

Query: 795  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
            YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+
Sbjct: 421  YSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGT 480

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 912
            YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G+V
Sbjct: 481  YDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIV 540

Query: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            DQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI PD
Sbjct: 541  DQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPD 600

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032
            +++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG 
Sbjct: 601  LVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGL 660

Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
            E MY+GHTG++L A ++LGPTYYQRLKH
Sbjct: 661  EIMYHGHTGKKLQAQVYLGPTYYQRLKH 688


>gi|300394678|gb|ADK11877.1| DNA-directed RNA polymerase II subunit two, partial [Athelia sp.
            FP-133442]
          Length = 674

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/675 (65%), Positives = 534/675 (79%), Gaps = 26/675 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEENAHSSIP-CT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQQ--RESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            IVE Q+L ++K+ +  L Q  R+  E+   W  LV  G IE +D EEEET MISMT  DL
Sbjct: 240  IVENQQLALQKKHVKWLNQGYRDGDEEEFRWEHLVKGGIIELLDAEEEETVMISMTPEDL 299

Query: 689  VQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQS 729
              +RL       H  +   D            T+THCEIHPS+ILG+CASIIPFPDHNQS
Sbjct: 300  ENSRLQQTGADPHANDGEFDPAARLKAGSDAHTWTHCEIHPSMILGICASIIPFPDHNQS 359

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360  PRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ 
Sbjct: 420  VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLR 479

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 907
            M+HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480  MKHGTYDKIEDDGLIAPGTVVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E G+VDQVL+TTN++G +FVKVRVR+ RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540  ENGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            GI PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600  GIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 1028 QMRGFETMYNGHTGR 1042
            Q RG E MY+GH+GR
Sbjct: 660  QSRGLEVMYHGHSGR 674


>gi|88601066|gb|ABD46529.1| RNA polymerase II second largest subunit, partial [Tulasnella violea]
          Length = 676

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/677 (64%), Positives = 531/677 (78%), Gaps = 21/677 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL GLFRMLF+KLT+DV  ++QKCV+  KD  L  A+K  TIT GLKYSLAT
Sbjct: 2    KRLDLAGPLLAGLFRMLFKKLTKDVFRHLQKCVETHKDFTLGAAVKNTTITQGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VG+ + PI+EFL+EW  E  EE +      ATK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGTLSAPIIEFLQEWDIEPLEEHANG--SGATKVFVN 179

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVG+HRD + LV TLRRLRR+ D++ EV +VRDIR +ELR+YTD GR  RPLFIVE  
Sbjct: 180  GVWVGVHRDAQELVMTLRRLRRKDDISAEVSIVRDIRERELRLYTDAGRVCRPLFIVENH 239

Query: 637  RLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPE 696
             LLI+K+ +  LQ+    +  GW +L+  G IE +D EEEET MI MT  DL  +    +
Sbjct: 240  ELLIRKKHVRQLQENSPEQPYGWTNLLHDGVIELLDAEEEETVMICMTPEDLENSLRTKD 299

Query: 697  EAYAD----------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 740
            E   D                T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 300  EFMQDADYDVAKRVKATMNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGK 359

Query: 741  QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 800
            QAMGI++TNYQ R+DT++ +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQ
Sbjct: 360  QAMGIFLTNYQIRVDTMSNILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQ 419

Query: 801  EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 860
            EDSVIMNQSS+DRG FRS+++RSY D EKK G +  E+F +P R  T+ M+HG+YDKL+D
Sbjct: 420  EDSVIMNQSSVDRGLFRSMYYRSYMDVEKKSGAVSVEEFEKPTRDTTLRMKHGTYDKLED 479

Query: 861  DGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLT 918
            DGL  PGT VSGED+IIGKT PI  D E  GQ ++ +T+RD S  L+ +E G++DQVLLT
Sbjct: 480  DGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTQTHTKRDVSTPLKSTENGIIDQVLLT 539

Query: 919  TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 978
            TN +GL+FVK+RVRS RIPQ+GDKF+SRHGQKGTVG+TY QEDMP+T EGITPDI++NPH
Sbjct: 540  TNGEGLKFVKIRVRSTRIPQVGDKFASRHGQKGTVGITYRQEDMPFTAEGITPDIVINPH 599

Query: 979  AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1038
            AIPSRMTIG L+EC++ K+A  +G EGDATPFTD+TV+++S  L   GYQ RG E MY+G
Sbjct: 600  AIPSRMTIGHLVECLLSKLATLLGNEGDATPFTDLTVESVSHLLKARGYQSRGLEVMYHG 659

Query: 1039 HTGRRLTAMIFLGPTYY 1055
            HTG++L A ++LGPTYY
Sbjct: 660  HTGKKLQAQVYLGPTYY 676


>gi|55583702|gb|AAV53370.1| RNA polymerase II second largest subunit [Ramaria rubella]
          Length = 677

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/678 (65%), Positives = 528/678 (77%), Gaps = 28/678 (4%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLASLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKPNTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMACISVGSPSPPVIEFLEEWGLESLEENAHSATP-CT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWLGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDGG-----WHDLVAKGFIEYIDTEEEETTMISMTIN 686
            IVE Q+L ++K+ I  L Q  S ED       W  L+  G IE +D EEEET MISMT  
Sbjct: 240  IVENQQLALQKKHIKWLHQGYSDEDPAREQYKWDSLIKGGVIELLDAEEEETVMISMTPE 299

Query: 687  DLVQARLHPEEA-------------------YADTYTHCEIHPSLILGVCASIIPFPDHN 727
            DL  +RL  +                     +A T+THCEIHPS+ILG+CASIIPFPDHN
Sbjct: 300  DLENSRLQQQGMQTNVNDGEFDPAARLKSVMHAHTWTHCEIHPSMILGICASIIPFPDHN 359

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG N
Sbjct: 360  QSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQN 419

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EK  G    E+F +P R  T
Sbjct: 420  AIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDMEKSSGIHQLEEFTKPTRDTT 479

Query: 848  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI-SQDEAQGQ-ASRYTRRDHSISLR 905
            + M+HG+YDKL+DDGL  PGT V GED+IIGKT PI  + E  GQ  S +TRRD S  L+
Sbjct: 480  LRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPESEELGQKTSSHTRRDVSTPLK 539

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
             +E+G+VDQVL+TT +DG RFVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 540  STESGIVDQVLITTGSDGHRFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFT 599

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
             EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S  L K 
Sbjct: 600  AEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVESVSTXLRKQ 659

Query: 1026 GYQMRGFETMYNGHTGRR 1043
            GY  RG E MY+GHTGR+
Sbjct: 660  GYHSRGLEVMYHGHTGRK 677


>gi|52699870|gb|AAU86996.1| DNA-dependent RNA polymerase II second largest subunit [Sarcogyne
            regularis var. regularis]
          Length = 702

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/702 (62%), Positives = 539/702 (76%), Gaps = 38/702 (5%)

Query: 405  PLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QA 463
            PLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q 
Sbjct: 1    PLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQK 60

Query: 464  NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 523
             AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEG
Sbjct: 61   KAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 120

Query: 524  QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 583
            QACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK+FVNG WVG+H
Sbjct: 121  QACGLVKNLALMCYITVGTPSQPIVDFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGVH 180

Query: 584  RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ------- 636
            RDP  LV T+  LRR   ++ EV +VRDIR +E +I+TD GR  RPLF++          
Sbjct: 181  RDPAHLVSTVLTLRRANAISHEVSLVRDIRDREFKIFTDAGRVCRPLFVINNDPRSTNCG 240

Query: 637  RLLIKKRDIIALQQ-RESPED--------GGWHDLVAKGFIEYIDTEEEETTMISMT--- 684
             L++ K+DI  L+  ++ P+D         GW+ L+ KG +EY+D EEEET MI MT   
Sbjct: 241  NLVLTKQDIHKLEDDKDLPDDYEIDEKNPPGWNGLIKKGIVEYVDAEEEETVMIVMTPED 300

Query: 685  ----------------INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
                             +DL++    P    A T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 301  LEISRQLQAGYNLPDTSDDLIKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFPDHNQ 360

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMG QAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NA
Sbjct: 361  SPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNA 420

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P RS+T+
Sbjct: 421  IVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMRSDTL 480

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 906
             ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S  LR 
Sbjct: 481  KLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVSTPLRS 540

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 541  TENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTK 600

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L + G
Sbjct: 601  EGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLREHG 660

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            YQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI +
Sbjct: 661  YQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 702


>gi|300394686|gb|ADK11881.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
            cerebella]
          Length = 685

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/682 (64%), Positives = 536/682 (78%), Gaps = 27/682 (3%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ N+  A+K +TIT+GLKYS
Sbjct: 1    FGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNISLAVKHQTITNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            M+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +     TK+
Sbjct: 121  MVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSS-AACTKV 179

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIV
Sbjct: 180  FVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIV 239

Query: 634  EKQRLLIKKRDIIALQQ----RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 689
            E Q+LL++K+ I  L Q     +  E+  W  LV  G IE +D EEEET MI+MT  DL 
Sbjct: 240  EDQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQLVKGGVIELLDAEEEETVMIAMTPEDLE 299

Query: 690  QARLHP--------EEAY-----------ADTYTHCEIHPSLILGVCASIIPFPDHNQSP 730
             +RL          +E Y           A T+THCEIHPS+ILG+CASIIPFPDHNQSP
Sbjct: 300  NSRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTHCEIHPSMILGICASIIPFPDHNQSP 359

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIV
Sbjct: 360  RNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIV 419

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M
Sbjct: 420  AILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRM 479

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 908
            +HG+YDK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E
Sbjct: 480  KHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTE 539

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
             G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 540  NGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEG 599

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            I PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ
Sbjct: 600  IVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQ 659

Query: 1029 MRGFETMYNGHTGRRLTAMIFL 1050
             RG E MY+GHTGR+L A ++L
Sbjct: 660  SRGLEVMYHGHTGRKLQAQVYL 681


>gi|52699851|gb|AAU86987.1| DNA-dependent RNA polymerase II second largest subunit [Petractis
            luetkemuelleri]
          Length = 716

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/716 (62%), Positives = 546/716 (76%), Gaps = 40/716 (5%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            D +G KR DLAGPL+ GLFRMLF KL +DV  Y++KCVDNGK+ NL   +K+ T+T+GLK
Sbjct: 1    DXFGKKRXDLAGPLMAGLFRMLFYKLFKDVNQYLKKCVDNGKEFNLTLGVKSTTLTNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YITVGS + PI+EF+ +   E  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMVQRNMEVLEEYEPTRSPNAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG+HRDP  LV T++ LRRR  +++EV ++RDIR +E +I+TD GR  RPLF
Sbjct: 181  KVFVNGVWVGVHRDPAHLVNTVQSLRRRNMISSEVSLIRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVE-------KQRLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDT 673
            +++       K  L++ K  +  L+  RE P D           GW  LVA G +E++D 
Sbjct: 241  VIDNDNKSPNKGSLVLTKELVNKLEDDRELPPDMDPDEKKLKYFGWAGLVASGAVEFLDA 300

Query: 674  EEEETTMISMTINDL-----VQA-------------RLH-PEEAYADTYTHCEIHPSLIL 714
            EEEET MI+MT  DL     VQA             R+  P  A   T+THCEIHPS+IL
Sbjct: 301  EEEETVMIAMTPEDLEISRQVQAGYALPEPSSDPNARVKAPVSAAQQTWTHCEIHPSMIL 360

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            G+CASIIPFPDHNQSPRNTYQSAMGKQA     TN+  RMDT+A +LYYPQKPL TTR+M
Sbjct: 361  GICASIIPFPDHNQSPRNTYQSAMGKQAXXXXXTNFDERMDTMANILYYPQKPLATTRSM 420

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSL++R Y ++EK++G  
Sbjct: 421  EFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLYYRVYVEQEKRIGMS 480

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 893
            + E F +P RS T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ +
Sbjct: 481  LVEQFEKPLRSETLRVKHGTYEKLDDDGIIAPGVRVSGEDIIIGKTAPIAPDAEELGQRT 540

Query: 894  R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
            + +T+RD S  LR +E G+VD+VLLTTNA+GL+FVKVR+R+ ++P IGDKF+SRHGQKGT
Sbjct: 541  KLHTKRDASTPLRSTENGIVDKVLLTTNAEGLKFVKVRMRTTKVPXIGDKFASRHGQKGT 600

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            +G+TY QEDMP++ EGITPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+
Sbjct: 601  IGITYRQEDMPFSAEGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTE 660

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMV  KIH+
Sbjct: 661  VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFFGPTYYQRLRHMVXXKIHA 716


>gi|103001731|gb|ABF71519.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            flavum]
          Length = 700

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/700 (63%), Positives = 538/700 (76%), Gaps = 40/700 (5%)

Query: 403  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 461
            AGPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSLATGNWG 
Sbjct: 1    AGPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSLATGNWGD 60

Query: 462  QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
            Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 61   QKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 120

Query: 522  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
            EGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG
Sbjct: 121  EGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVG 180

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----- 636
            +HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++       
Sbjct: 181  VHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTN 240

Query: 637  --RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISM 683
               L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEEET MI M
Sbjct: 241  CGNLVLTKEHINKLEDDRDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVM 300

Query: 684  TINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFP 724
            T  DL     +QA     EA  D              T+THCEIHPS+ILG+CASIIPFP
Sbjct: 301  TPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFP 360

Query: 725  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
            DHNQSPRNTYQSAMGKQ+MG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 361  DHNQSPRNTYQSAMGKQSMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPA 420

Query: 785  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 844
            G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P R
Sbjct: 421  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMR 480

Query: 845  SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 902
            S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ + +RD S 
Sbjct: 481  SDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLHVKRDVST 540

Query: 903  SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
             LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 541  PLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDM 600

Query: 963  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1022
            P+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L
Sbjct: 601  PFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLL 660

Query: 1023 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 661  REHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 700


>gi|86559351|gb|ABD04083.1| RNA polymerase II second largest subunit, partial [Botryobasidium
            subcoronatum]
          Length = 677

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/677 (64%), Positives = 530/677 (78%), Gaps = 27/677 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL GLFRMLFRKLT+DV  Y+QKCV+  ++ NL  A+K  TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLAGLFRMLFRKLTKDVYRYLQKCVETHREFNLNVAVKHNTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNL+LM  I+VGS + P++EFL+EWG E  EE +      ATK+FVN
Sbjct: 122  PAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLQEWGLEGLEE-NATHQGNATKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+GIHRD   LVKTLRRLRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE  
Sbjct: 181  GVWMGIHRDAPNLVKTLRRLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENH 240

Query: 637  RLLIKKRDI--IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 694
             L +KK+ +  I  +Q E+ +  GW +LV  G +E +D EEEET MI M+  DL  +R  
Sbjct: 241  ELSLKKKHVKWIMDRQDENGQPYGWSNLVTSGVVELLDAEEEETVMICMSSQDLDDSRQQ 300

Query: 695  PEEAY----------------------ADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
                Y                      + T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 301  YMSGYVPGPREVEHHASGGARVKAVLNSHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 360

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMGIY+TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 361  TYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 420

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
             CYSGYNQEDSVIMNQSSIDRG FRS+++RS+ D EKK+G L  E+F +P    T+ M+ 
Sbjct: 421  LCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSHMDSEKKVGVLPVEEFEKPTPDTTLRMKR 480

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRYTRRDHSISLRHSETGM 911
            G+YDKLDDDGL PPGT V+GEDVIIGKT P+  D E  GQ   +TRRD S +L+ +E G+
Sbjct: 481  GTYDKLDDDGLIPPGTGVNGEDVIIGKTAPLPPDSEELGQRKSHTRRDASTALKSTENGI 540

Query: 912  VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
            +DQVL+TTNADGL+FVK+RVRS RIPQ+GDKF+SRHGQKGT+G+TY QEDMP+T EGITP
Sbjct: 541  IDQVLVTTNADGLKFVKIRVRSTRIPQVGDKFASRHGQKGTIGITYRQEDMPFTAEGITP 600

Query: 972  DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
            DII+NPHAIPSRMTIG L+EC++ K+A  +G EGDATPFT++TV+++SK L + GYQ RG
Sbjct: 601  DIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTELTVESVSKLLRERGYQSRG 660

Query: 1032 FETMYNGHTGRRLTAMI 1048
             E MY+GHTGR+L A +
Sbjct: 661  LEVMYHGHTGRKLQAQV 677


>gi|320172600|gb|ADW24183.1| RNA polymerase II second largest subunit [Veluticeps berkeleyi]
          Length = 679

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/680 (65%), Positives = 538/680 (79%), Gaps = 28/680 (4%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV++ K+ NL  A+K  TIT+GLK
Sbjct: 2    DHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLSLAVKHNTITNGLK 61

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 62   YSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 121

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 122  WGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEENAHSATP-CT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HR+P+ LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 181  KVFVNGVWMGVHRNPQDLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 240

Query: 632  IVEK-QRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTIND 687
            IVE+ Q+L + K+ +  L+Q    +DG    W  LV  G IE +D EEEET MISMT  D
Sbjct: 241  IVEENQQLALHKKHVRWLKQGYRDDDGEPWKWDQLVKNGIIELLDAEEEETVMISMTPED 300

Query: 688  LVQARLHPEEA-------------------YADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            L  +RL P  A                   ++ T+THCEIHPS+ILGVCASIIPFPDHNQ
Sbjct: 301  LENSRL-PAGAVDPRADEEFDPAARLKAATHSHTWTHCEIHPSMILGVCASIIPFPDHNQ 359

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360  SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNA 419

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420  IVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTL 479

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 906
             M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S +++ 
Sbjct: 480  RMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRSHTRRDVSTAMKS 539

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E G+VDQVL+TTN +G +FVKVR+RS R+PQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540  TEQGIVDQVLITTNHEGQKFVKVRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGITPDII+NPHAIPSRMTIG L+EC++ KVA   G EGDATPFTD+TV+++S+ L + G
Sbjct: 600  EGITPDIIINPHAIPSRMTIGHLVECLLSKVATLTGNEGDATPFTDLTVESVSQFLREKG 659

Query: 1027 YQMRGFETMYNGHTGRRLTA 1046
            YQ RG E MY+GHTGR+L A
Sbjct: 660  YQSRGLEVMYHGHTGRKLQA 679


>gi|46411490|gb|AAS94316.1| RNA polymerase II [Acarosporina microspora]
          Length = 717

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/717 (61%), Positives = 547/717 (76%), Gaps = 40/717 (5%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPL+  LFR LF+KL +DV  Y+QKCV++GK+ NL   +K+ T+T+
Sbjct: 1    DDRDHFGKKRLDLAGPLMASLFRGLFQKLVKDVFKYLQKCVESGKEFNLTLGVKSTTLTN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  A   +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKAMSAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
             + WG++CPAETPEGQACGLVKNLALM YITVGS + PI+++L     +  EE  P   P
Sbjct: 121  CTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPSAPIIDYLVSRNMDVLEEYEPTRHP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             +TKIFVNG WVG+HR+P  LV+ ++ LRR+  ++ E+ +VRDIR +E +I+TD GR  R
Sbjct: 181  NSTKIFVNGVWVGVHRNPAQLVQHMQVLRRKKYLSFELSLVRDIRDREFKIFTDAGRVCR 240

Query: 629  PLFIVE-------KQRLLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEY 670
            PLF++E       K  L++ K  I  L+  R+ P D           GW  LV  G +E+
Sbjct: 241  PLFVIENDPRNPNKGNLILTKDLINKLEDDRDLPPDLTKEEREERYFGWDGLVGSGVVEF 300

Query: 671  IDTEEEETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPS 711
            +D EEEET MI MT  DL     VQA   P E   D              T+THCEIHPS
Sbjct: 301  LDAEEEETVMIVMTPEDLEVSRQVQAGYAPPEPNNDPNARVKGKVNLQQHTWTHCEIHPS 360

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            +ILGVCASIIPFPDHNQSPRNTYQS MGKQAMG+++TN+  R+DT++ +LYYPQKPL TT
Sbjct: 361  MILGVCASIIPFPDHNQSPRNTYQSTMGKQAMGVFLTNFDERIDTMSNILYYPQKPLATT 420

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            R+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++
Sbjct: 421  RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVEQEKRI 480

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 890
            G  + E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI  D E  G
Sbjct: 481  GMSLVETFEKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIPPDSEEMG 540

Query: 891  QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            Q ++ +T+RD S  LR +E G+VD+VLLTTNA+GL+FVKVR R+ +IPQIGDKF+SRHGQ
Sbjct: 541  QRTKLHTKRDASTPLRSTENGIVDKVLLTTNAEGLKFVKVRTRTTKIPQIGDKFASRHGQ 600

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGT+G+TY  EDMP++ EGITPDII+NPHAIPSRMTI  LIEC + KV++  G EGDATP
Sbjct: 601  KGTIGVTYRMEDMPFSSEGITPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATP 660

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            FT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L + +F GPTYYQRLKHMVDDKI
Sbjct: 661  FTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVSQVFFGPTYYQRLKHMVDDKI 717


>gi|123979382|gb|ABM81516.1| RNA polymerase II second largest subunit [Parmeliella appalachensis]
          Length = 704

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/705 (63%), Positives = 539/705 (76%), Gaps = 45/705 (6%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+  ++ NL   +K+ T+T+GLKYSLAT
Sbjct: 2    KRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVEGNREFNLTLGVKSTTLTNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRANTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YITVGS + PI+EF+     E  EE  P   P ATK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMCYITVGSPSEPIIEFMITRNMEILEEYEPLRSPNATKVFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++E  
Sbjct: 182  GVWVGVHRDPAHLVSTVQSLRRRHWISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIEND 241

Query: 637  -------RLLIKKRDIIALQQRESPEDGG-------------WHDLVAKGFIEYIDTEEE 676
                    L++ K  I+ L+  E  E GG             W  LV +G +EY+D EEE
Sbjct: 242  HKSPNYGNLVLTKEHILRLE--EDKELGGDMDLEEREAKFMGWEGLVNQGVVEYVDAEEE 299

Query: 677  ETTMISMTINDL-----VQARLHPEEAYAD---------------TYTHCEIHPSLILGV 716
            ET MI MT  DL     +QA    EE   D               T+THCEIHPS+ILG+
Sbjct: 300  ETVMIVMTPEDLEISRHIQAGFAIEEPSDDDPNRRVKAPMNPTAHTWTHCEIHPSMILGI 359

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME 
Sbjct: 360  CASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEF 419

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V 
Sbjct: 420  LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVV 479

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 894
            E F +P +S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ 
Sbjct: 480  EQFEKPMKSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKL 539

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 540  HVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIG 599

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 600  ITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 659

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
            VD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+
Sbjct: 660  VDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 704


>gi|82504135|gb|ABB80490.1| RNA polymerase II subunit [Symbiotaphrina kochii]
          Length = 714

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/712 (62%), Positives = 545/712 (76%), Gaps = 41/712 (5%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH G KR DLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLK
Sbjct: 2    DHXGKKRXDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLK 61

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  A  ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 62   YSLATGNWGDQKKAMSSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 121

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 122  WGLVCPAETPEGQACGLVKNLALMCYITVGTPSDPIVDFMIQRNMEVLEEYEPQRSPNAT 181

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG+HRDP  LV+ ++ LRR+  ++ EV +VR+IR +E +I+TD GR  RPLF
Sbjct: 182  KVFVNGVWVGVHRDPSHLVRDVQDLRRKHLISHEVSLVREIRDREFKIFTDAGRVCRPLF 241

Query: 632  IVEKQ-------RLLIKKRDIIALQQRE------SPEDG-----GWHDLVAKGFIEYIDT 673
            ++           L++ K  I  L+  +      SPE+      GW  LV  G +EY+D 
Sbjct: 242  VINNNPRSDQCGTLVLTKEHIARLEDDKDLDPDLSPEEREERLFGWQGLVNNGIVEYMDA 301

Query: 674  EEEETTMISMTINDL-----VQA--RLHPEEA-------------YADTYTHCEIHPSLI 713
            EEEET MI MT  DL     +QA  R+  EE               A ++THCEIHPS+I
Sbjct: 302  EEEETAMIVMTPEDLEISRQMQAGYRVEEEETEDLNKRVKAPLKPTAHSWTHCEIHPSMI 361

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LG+CASIIPFPDHNQSPRNTYQSAMG QAMG+Y+TN+  RMDT+A +LYYPQKPL TTR+
Sbjct: 362  LGICASIIPFPDHNQSPRNTYQSAMGXQAMGVYLTNFDSRMDTMANILYYPQKPLATTRS 421

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G 
Sbjct: 422  MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRVGM 481

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 892
             V E F +P RS+T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 482  SVVEQFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQR 541

Query: 893  SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
            ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 542  TKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 601

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 602  TIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 661

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            +VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD
Sbjct: 662  EVTVDSVSRLLREHGYQSRGFEIMYNGHTGRKLRAQVFLGPTYYQRLRHMVD 713


>gi|103001406|gb|ABF71506.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 707

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/707 (63%), Positives = 538/707 (76%), Gaps = 40/707 (5%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG+
Sbjct: 61   ATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVF 180

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++
Sbjct: 181  VNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVID 240

Query: 635  KQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEE 676
                      L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEE
Sbjct: 241  NDPKSTNCGNLVLTKEHISKLEDDRDLPAIMDPEEKEAKFFGWDGLVNNGVVEYVDAEEE 300

Query: 677  ETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVC 717
            ET MI MT  DL     +QA     EA  D              T+THCEIHPS+ILG+C
Sbjct: 301  ETVMIVMTPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGIC 360

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRNTYQSAMGK      +TNY  RMDT+A +LYYPQKPL TTR+ME L
Sbjct: 361  ASIIPFPDHNQSPRNTYQSAMGKXXXXXXLTNYDQRMDTMANILYYPQKPLATTRSMEFL 420

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
             FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E
Sbjct: 421  KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVE 480

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 895
             F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ +
Sbjct: 481  QFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLH 540

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
             +RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 541  VKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 600

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1015
            TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV
Sbjct: 601  TYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTV 660

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            D++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 661  DSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 707


>gi|119644179|gb|ABL85610.1| RNA polymerase II second largest subunit [Buellia stillingiana]
          Length = 717

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/720 (62%), Positives = 542/720 (75%), Gaps = 46/720 (6%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFR LF KL +DV  Y++ C++N ++ NL   +K+  IT+
Sbjct: 1    DDRDHFGKKRLDLAGPLLANLFRTLFNKLNKDVERYLKNCIENNREFNLTLGVKSTHITN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM Y++VG+    +++FL +   E+ EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCYVSVGAPIEGVVDFLFQRQMESLEEYDPLTSP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATKIFVNG WVG+HR P  LV  ++ LRR+  +  EV +VRDIR +E +I TD GR  R
Sbjct: 181  HATKIFVNGVWVGVHRSPAALVNAVQDLRRKQVIAYEVSLVRDIRDREFKILTDQGRVLR 240

Query: 629  PLFIVEKQ-------RLLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEY 670
            PLF+VE          L++ K  I  L+  R+ P D           GWH LV +G +EY
Sbjct: 241  PLFVVENDPKSPICGDLVLNKGHIEKLESDRDIPLDIDKEERVKKTYGWHGLVNEGVVEY 300

Query: 671  IDTEEEETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEI 708
            +D +EEET MI MT  DL                      V+A ++P    A T+THCEI
Sbjct: 301  VDADEEETVMIVMTPYDLNVSRQVQAGYALPEDNDDPNARVKAPINPT---AHTWTHCEI 357

Query: 709  HPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPL 768
            HPS+ILGVC SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM+T+A++LYYPQKPL
Sbjct: 358  HPSMILGVCVSIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMETMAHILYYPQKPL 417

Query: 769  VTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEE 828
             TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRS FFRSY D+E
Sbjct: 418  ATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSPFFRSYSDQE 477

Query: 829  KKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-E 887
             ++G  V E F +P RSNTM ++HG+Y+KLDDDGL  PG RVSGED+IIGKT PI+ D E
Sbjct: 478  GRIGLNVIEQFEKPMRSNTMKLKHGTYEKLDDDGLIIPGARVSGEDIIIGKTAPITADAE 537

Query: 888  AQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSR 946
              GQ  +   RRD S  LR +E+G+VDQV LTTNA+G +FVKVR+R+ +IPQIGDKF+SR
Sbjct: 538  ELGQGIKIRERRDASTPLRSTESGLVDQVALTTNAEGHKFVKVRMRTTKIPQIGDKFASR 597

Query: 947  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
            HGQKGT+G+TY QEDMP+T EG+ PDII+NPHAIPSRMTI  LIEC + KV++  G EGD
Sbjct: 598  HGQKGTIGITYRQEDMPFTSEGLVPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGD 657

Query: 1007 ATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            ATPFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 658  ATPFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 717


>gi|110666973|gb|ABG81887.1| RNA polymerase II second largest subunit [Physcia aipolia]
          Length = 718

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/718 (61%), Positives = 544/718 (75%), Gaps = 41/718 (5%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DD DH+G KRLDLAGPLL GLFR LF KLT+DV  Y++ C++  K+  L   +K+ T+T+
Sbjct: 1    DDSDHFGKKRLDLAGPLLAGLFRTLFNKLTKDVEKYLKSCIELNKEFILTLGVKSATLTN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM  ++VG+ +  I+ FL +   E+ EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCNVSVGTPSDGIVPFLLQRQMESLEEYEPHTAP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATKIFVNG WVG+HR P  LV  ++ LRR+  +  EV ++RDIR +E RI TD GR  R
Sbjct: 181  NATKIFVNGVWVGVHRHPAHLVNAVQSLRRKHVLEPEVSLIRDIREREFRILTDQGRVLR 240

Query: 629  PLFIVEKQ-------RLLIKKRDIIALQQRES-PEDG----------GWHDLVAKGFIEY 670
            PLF+V+          L+  K     L + ++ P D           GW+ L+ +G +EY
Sbjct: 241  PLFVVDNDPKSNRCGDLVFNKEHSQKLDEDDAVPYDMDKEVREKLTFGWNGLIDEGVVEY 300

Query: 671  IDTEEEETTMISMTINDLVQAR--------------------LHPEEAYADTYTHCEIHP 710
            +D EEEET MI MT  DL  +R                      P    A T+THCEIHP
Sbjct: 301  VDAEEEETVMIVMTPQDLAMSRQLRAGYTLDQPDPDEPNRRVTAPLNPTAHTWTHCEIHP 360

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM+T++++LYYPQKPL T
Sbjct: 361  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMETMSHILYYPQKPLAT 420

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME+L FR+LPAG NAIVAIACYSGYNQ DSVIMNQSSIDRG FRSLF+RSY D+EKK
Sbjct: 421  TRSMEYLKFRELPAGQNAIVAIACYSGYNQGDSVIMNQSSIDRGLFRSLFYRSYTDQEKK 480

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
            +G  V E F +P RS+T+  ++G+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481  IGAHVVEAFEKPMRSDTLRTKNGTYDKLDDDGLIVPGARVSGEDIIIGKTAPIAPDAEEM 540

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ ++ +T+RD S  LR +E+G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541  GQRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 600

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDAT
Sbjct: 601  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 660

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            PFT+VTVD++S+ LH+ GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661  PFTEVTVDSVSRLLHEHGYQSRGFEIMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 718


>gi|52699906|gb|AAU87014.1| DNA-dependent RNA polymerase II second largest subunit [Xanthoria
            elegans]
          Length = 717

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/720 (60%), Positives = 544/720 (75%), Gaps = 47/720 (6%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            D  G KRLDLAGPLL GLFRMLF+KLT+D+  Y+QKCV++ ++ NL   +K  T++SGLK
Sbjct: 1    DXXGKKRLDLAGPLLAGLFRMLFQKLTKDIYKYLQKCVESNREFNLTLGVKQNTLSSGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YI+VG+ A PI+++L   G E+ EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCYISVGTPADPIVDYLTNRGMESLEEYEPTRAPHAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G H DP  LV  ++ +RR+  +  E  +VRDIR +E +I+TD GR  RPLF
Sbjct: 181  KVFVNGTWIGCHNDPAHLVPHIQEVRRKGIIAHEASLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVEK-----------------QRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEYIDT 673
            +++                  Q+L  ++  ++ +   E  E   GW  LV  G +EY+D 
Sbjct: 241  VIDNDPKSENMGNLALTKDMVQKLEDERDMVLTMDPEERAEQVIGWEALVDSGAVEYVDA 300

Query: 674  EEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCEIHP 710
            EEEET MI+MT  DL                       V+A L+P    A T+THCEIHP
Sbjct: 301  EEEETIMIAMTPEDLEISRQIQAGYAAPVPSEDAPNQRVKAPLNPT---AHTWTHCEIHP 357

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL T
Sbjct: 358  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLAT 417

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK+
Sbjct: 418  TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDTEKR 477

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
            +G  V E F +P R+ T+ ++HG+YDKLDDDGL  PG RVSGEDVIIGKTTPI+ D +  
Sbjct: 478  VGMTVLEKFEKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTPIAPDAQEM 537

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ ++ + ++D S  LR +E G+VD+VLL+TN++GL+FVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 538  GQRTKSHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFASRHG 597

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDAT
Sbjct: 598  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDAT 657

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            PFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI +
Sbjct: 658  PFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 717


>gi|113957802|gb|ABI49123.1| RNA polymerase II second largest subunit [Teloschistes exilis]
          Length = 709

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/710 (61%), Positives = 540/710 (76%), Gaps = 43/710 (6%)

Query: 399  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 458
            RLDLAGPLL  LFRMLF+KLT+D+  Y+QKCV++ ++ NL   +K  TI+SGLKYSLATG
Sbjct: 1    RLDLAGPLLASLFRMLFQKLTKDIYKYLQKCVESNREFNLTLGVKQNTISSGLKYSLATG 60

Query: 459  NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 517
            NWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 61   NWGDQKKAAQAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 120

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEGQACGLVKNLALM +I+VGS A PI ++L + G E  EE  P  +P ATK+FVNG
Sbjct: 121  AETPEGQACGLVKNLALMCFISVGSPAEPITDYLIQRGMEVLEEYEPTRMPNATKVFVNG 180

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK-- 635
             WVG+H DP  LV  ++ LRR+  +  E  +VRDIR +E +I+TD GR  RPLF+V+   
Sbjct: 181  VWVGVHHDPAHLVPNVQELRRKGIILHEASLVRDIRDREFKIFTDAGRVCRPLFVVDNDP 240

Query: 636  ---------------QRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFIEYIDTEEEETT 679
                           QR+  ++  +I + + E  E   GW  LV  G IEY+D EEEET 
Sbjct: 241  KSGNAGYLALTKEMVQRVEDERDTVITMDREERAEQSIGWQGLVDSGAIEYVDAEEEETI 300

Query: 680  MISMTINDLVQARLHPEEAY---------------------ADTYTHCEIHPSLILGVCA 718
            MI+MT  DL  +R H +  Y                     A T+THCEIHPS+ILG+CA
Sbjct: 301  MIAMTPEDLEISR-HVQAGYPMPESNEDAPNQRVKAPVNPTAHTWTHCEIHPSMILGICA 359

Query: 719  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 778
            SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L 
Sbjct: 360  SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDERMDTMANILYYPQKPLATTRSMEFLK 419

Query: 779  FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 838
            FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK++G  V E 
Sbjct: 420  FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDTEKRVGMTVLEK 479

Query: 839  FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YT 896
            F RP RS T+ ++HG+YDKLDDDGL  PG RVSG+DVIIGKTTPI+ D E  GQ ++ + 
Sbjct: 480  FERPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGKTTPIAPDAEEMGQRTKNHI 539

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            ++D S  LR +E G+VD+VLL+TN++GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+T
Sbjct: 540  KKDTSTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGIT 599

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT++TVD
Sbjct: 600  YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTEITVD 659

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            ++SK L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+HMVDDKI
Sbjct: 660  SVSKLLREHGYQSRGFEVMYNGHTGRKLVVQVFLGPTYYQRLRHMVDDKI 709


>gi|52699847|gb|AAU86985.1| DNA-dependent RNA polymerase II second largest subunit [Pertusaria
            amara]
          Length = 716

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/716 (61%), Positives = 543/716 (75%), Gaps = 40/716 (5%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH G KRLDLAGPL+ GLFR LF+KLTRDV  Y+QKCV+  ++ NL   +K+ T+T+GLK
Sbjct: 1    DHXGKKRLDLAGPLMAGLFRNLFKKLTRDVFKYLQKCVETNREFNLTLGVKSTTLTNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAAQSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNL+LM  +TVGS + PI+ F+ +   E  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLSLMCCVTVGSPSEPIINFMIQRNMEILEEYEPMNSPHAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNG WVG+HRD   LV  + +LRRR  +  EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181  KIFVNGVWVGVHRDAASLVSNVIQLRRRGVIEPEVSMVRDIRDREFKIFTDAGRVQRPLF 240

Query: 632  IVE-------KQRLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDT 673
            +V+       K  L++ K  +  L+  +E P+D           GW  LV +G +EY+D 
Sbjct: 241  VVDNDVKSSNKGSLVLTKELVSRLEDDKELPDDMDPDEKEAKMLGWKGLVERGVVEYLDA 300

Query: 674  EEEETTMISMTINDL-----VQARLH--------------PEEAYADTYTHCEIHPSLIL 714
            EEEET MI MT  DL     +QA                 P    A T+THCEIHPS+IL
Sbjct: 301  EEEETVMIVMTPEDLEISRQIQAGYQMPEPTDEPNKRVKAPLNRTAHTWTHCEIHPSMIL 360

Query: 715  GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 774
            G+CASIIPFPDHNQSPRNTYQSAMG QAMG+++TN+  RMDT+A +LYYPQKPL TTR+M
Sbjct: 361  GICASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNFDERMDTMANILYYPQKPLATTRSM 420

Query: 775  EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 834
            E L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  
Sbjct: 421  EFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMS 480

Query: 835  VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQAS 893
            V E F +P RS+T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT PI+ D E  GQ +
Sbjct: 481  VVEQFEKPMRSDTLKLKHGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPIAPDAEELGQRT 540

Query: 894  R-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 952
            + + +RD S  LR +E G+VD+VLLTTNA+GLRFVKVR R+ ++PQIGDKF+SRHGQKGT
Sbjct: 541  KLHVKRDVSTPLRSTENGIVDKVLLTTNAEGLRFVKVRTRTTKVPQIGDKFASRHGQKGT 600

Query: 953  VGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD 1012
            +G+TY  EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+
Sbjct: 601  IGITYRMEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTE 660

Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI +
Sbjct: 661  VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKIXA 716


>gi|52699882|gb|AAU87002.1| DNA-dependent RNA polymerase II second largest subunit [Sporastatia
            testudinea]
          Length = 700

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/700 (62%), Positives = 540/700 (77%), Gaps = 40/700 (5%)

Query: 409  GLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAG 467
            GLFRMLF KLT+DV  Y+QKCV++ ++ NL   IKA T+T+GLKYSLATGNWG Q  AA 
Sbjct: 1    GLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGIKASTLTNGLKYSLATGNWGDQKKAAS 60

Query: 468  TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
            ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACG
Sbjct: 61   SKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 120

Query: 528  LVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPE 587
            LVKNLALM Y+TVGS + PI++F+ +   E  EE  P   P ATKIF+NG WVG+HRDP 
Sbjct: 121  LVKNLALMCYVTVGSPSEPIVDFMIQRNMEVLEEYEPQRSPNATKIFINGVWVGVHRDPA 180

Query: 588  MLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLI 640
             LV T++ LRR+  ++ EV ++RDIR +E +I+TD GR  RPLF+++       +  L++
Sbjct: 181  HLVSTVQALRRKNVISHEVSLIRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNRGNLVL 240

Query: 641  KKRDIIALQQRE------SPEDG-----GWHDLVAKGFIEYIDTEEEETTMISMTINDLV 689
             K  +  L++ +       PE+      GW+ LV +G +EY+D EEEET MI MT  DL 
Sbjct: 241  TKEHVAQLEEDKEKGAEMDPEEKEGKVMGWNSLVNQGVVEYVDAEEEETVMIVMTPEDLE 300

Query: 690  QARL-------------------HPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSP 730
             +R                     P    A T+THCEIHPS+ILG+CASIIPFPDHNQSP
Sbjct: 301  ISRQLQAGFAMPETVDDPNRRVKAPVNLTAHTWTHCEIHPSMILGICASIIPFPDHNQSP 360

Query: 731  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 790
            RNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPAG NAIV
Sbjct: 361  RNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIV 420

Query: 791  AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGM 850
            AIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  + E F +P RS+T+ +
Sbjct: 421  AIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRVGMSIVEQFEKPMRSDTLKL 480

Query: 851  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSE 908
            +HG+YDKLDDDG+  PG RVSGED++IGKT PI+ D E  GQ ++ + +RD S  LR +E
Sbjct: 481  KHGTYDKLDDDGIVAPGVRVSGEDIVIGKTAPIAPDAEELGQRTKLHVKRDASTPLRSTE 540

Query: 909  TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
             G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDMP+T EG
Sbjct: 541  NGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEG 600

Query: 969  ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1028
            + PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L + GYQ
Sbjct: 601  VVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLLREHGYQ 660

Query: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
             RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI +
Sbjct: 661  SRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIXA 700


>gi|52699827|gb|AAU86975.1| DNA-dependent RNA polymerase II second largest subunit [Lecanora
            concolor]
          Length = 708

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/708 (62%), Positives = 540/708 (76%), Gaps = 41/708 (5%)

Query: 400  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 459
            LDLAGPLL GLFRMLF KLT+DV  Y+QKCV+NGK+ N   A+K+ T+T+GLKYSLATGN
Sbjct: 1    LDLAGPLLAGLFRMLFHKLTKDVYKYLQKCVENGKEFNPTLAVKSSTLTNGLKYSLATGN 60

Query: 460  WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
            WG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPA
Sbjct: 61   WGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 120

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALM YITVGS + PI++F+ +   +  EE  P   P ATKIFVNG 
Sbjct: 121  ETPEGQACGLVKNLALMCYITVGSPSDPIIDFMVQRNMDVLEEYEPLTFPNATKIFVNGV 180

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-- 636
            WVG+HR+P  LV  ++ LRR   ++ EV +VRD+R +E +I+TD GR  RPLF+++    
Sbjct: 181  WVGVHREPAHLVSNVQALRRNGLISHEVSLVRDVRDREFKIFTDAGRVCRPLFVIDNDPK 240

Query: 637  -----RLLIKK---------RDIIALQQRESPE--DGGWHDLVAKGFIEYIDTEEEETTM 680
                  L++ K         RD +     E  E  D GW  L+ +G +EY+D EEEET M
Sbjct: 241  SSNCGNLVLTKEIVQQVEEDRDTLIGMDPEERERLDLGWKRLIKQGVVEYVDAEEEETIM 300

Query: 681  ISMTINDLVQAR------LHPE--------------EAYADTYTHCEIHPSLILGVCASI 720
            I+MT   L ++R        PE                 A  +THCEIHPS+ILG+CASI
Sbjct: 301  ITMTPQQLEESRQVLQGYTLPEPGDDELNKRVTAKVNTSARNWTHCEIHPSMILGICASI 360

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L FR
Sbjct: 361  IPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLATTRSMEFLKFR 420

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
            +LPAG NAIVAIACY+GYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F 
Sbjct: 421  ELPAGQNAIVAIACYTGYNQEDSVIMNQSSIDRGLFRSLFYRAYSDQEKQIGHSVLEQFE 480

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRR 898
            +P RS T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ ++ +T+R
Sbjct: 481  KPMRSETLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPITADAEELGQRTKAHTKR 540

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  LR +E G+VDQVL++TNADGLRF KVR+R+ +IPQIGDKF+SRHGQKGT+G+TY 
Sbjct: 541  DISTPLRSTENGIVDQVLMSTNADGLRFAKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 600

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
            QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++
Sbjct: 601  QEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSV 660

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            S+ L + GY  RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI
Sbjct: 661  SRLLRENGYHSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKI 708


>gi|46411496|gb|AAS94318.1| RNA polymerase II [Ostropa barbara]
          Length = 719

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/719 (61%), Positives = 548/719 (76%), Gaps = 42/719 (5%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DD DH+G KRLDLAGPLL  LFR LFR+LT DV  Y+ KCV + K+ NL   +K+ T+T+
Sbjct: 1    DDSDHFGKKRLDLAGPLLAKLFRNLFRRLTGDVYKYLTKCVSDNKEFNLTLGVKSTTLTN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM Y+TVG+ + PI+EF+ +   E  EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIIEFMIQRNMEVLEEYEPLRSP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATK+FVNG WVG+HRDP  LVKT++ LRR   ++ EV ++RDIR +E +I+TD GR  R
Sbjct: 181  NATKVFVNGVWVGVHRDPAHLVKTVQHLRRSHLISHEVSLIRDIRDREFKIFTDAGRVCR 240

Query: 629  PLFIVE-------KQRLLIKKRDIIALQ------------QRESPEDGGWHDLVAKGFIE 669
            PLF+++       K  L++ K  I  L+            Q+ +    G+  L+  G +E
Sbjct: 241  PLFVIDNDVDSANKGNLVLNKEHIRRLEDDQTMPANMDAEQKANSGFFGFQGLINDGVVE 300

Query: 670  YIDTEEEETTMISMTINDLVQAR-------LHPEEA-------------YADTYTHCEIH 709
            Y+D EEEET MI MT  DL  +R       + P+++              A  +THCEIH
Sbjct: 301  YVDAEEEETVMIVMTPEDLDISRQLQAGYQIRPDDSGDLNKRVKAPMNPTAHIWTHCEIH 360

Query: 710  PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 769
            PS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL 
Sbjct: 361  PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLA 420

Query: 770  TTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEK 829
            TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQ+SIDRG FRSLF+R+Y D+EK
Sbjct: 421  TTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQTSIDRGLFRSLFYRAYTDQEK 480

Query: 830  KMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EA 888
            ++G  V E F +P R++T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT P++ D E 
Sbjct: 481  RIGMNVVEQFEKPYRADTLKLKHGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPMAPDAEE 540

Query: 889  QGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 947
             GQ ++ +T+RD S  LR +E G+VDQVL+TTNA+GLRFVKVR+R+ +IPQIGDKF+SRH
Sbjct: 541  LGQRTKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRH 600

Query: 948  GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 1007
            GQKGT+G+TY QEDMP+T +GI PD+I+NPHAIPSRMTI  LIEC + KV+   G EGDA
Sbjct: 601  GQKGTIGITYRQEDMPFTRQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDA 660

Query: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            TPFT+VTVD++SK L   GYQ RGFE MY+GHTGR++ A +FLGPTYYQRL+HMVDDKI
Sbjct: 661  TPFTEVTVDSVSKLLRDHGYQSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKI 719


>gi|330833900|ref|YP_004408628.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
 gi|329566039|gb|AEB94144.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
          Length = 1124

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1181 (43%), Positives = 711/1181 (60%), Gaps = 89/1181 (7%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            +T +D WA++ AYF+ +GLVRQ LDSF++FI+N +QEI+DE A+I     +   PG    
Sbjct: 2    LTIDDRWAIVEAYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQAEI-----TTEIPG---- 52

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                  KI  G+I + KP + E+D     + P  ARLRNLTY+AP+Y+++T   I+   +
Sbjct: 53   -----LKIRLGKIRVGKPRVREADKGDKEITPMEARLRNLTYAAPVYLEMTP--IENNIE 105

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
            G       D T+V+IG +PIML+S      + + + L E+GE P D GGYFI+NGSE+V+
Sbjct: 106  G-------DLTEVYIGDIPIMLKSIADPTSEFTSEKLVEIGEDPKDPGGYFIVNGSERVI 158

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            + QE ++TN V     +  +   + A++ S + S  R P T  +  L  ++         
Sbjct: 159  VTQEDLATNRVLTDVGKTGSNITHTAKIIS-STSGYRVPIT--IEKLKDST--------- 206

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
            I  + P +  +IP  I+ RALG   D++I   +  D  D Q  ELL PS+E+A  I ++ 
Sbjct: 207  IHVSFPAVPGKIPFAILMRALGIETDEEITLAVSLD-PDIQN-ELL-PSIEQASSIISKD 263

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
             ALD+IG R A +G  R+ RI+ A+++L K  LPH+GT     T KAYY  + + +L+  
Sbjct: 264  DALDFIGNRIA-IGQKREMRIQKAEQVLDKYFLPHIGTNASDRTAKAYYLAFAVSKLIEL 322

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
             LGRR  DD+DHY NKRL LAG L   LFR+ F+   +D+   ++K    G+ + +   +
Sbjct: 323  YLGRREPDDKDHYANKRLKLAGDLFASLFRVAFKAFVKDLVFQLEKSKVRGRRLAVNALV 382

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            +   I+  ++++LATGNW      G R GVSQ+L+R  + S LSHLRR+ S + R     
Sbjct: 383  RQDIISERIRHALATGNW-----VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNF 437

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            + R LH +QWG MCP ETPEG   GLVKNLAL+  I+VG     +   L   G    EE+
Sbjct: 438  EARDLHGTQWGRMCPFETPEGPNSGLVKNLALLGQISVGVNEKSVERLLYNLGVIPIEEV 497

Query: 563  SPAVIPQA---------TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV--VRD 611
                  Q          +K+ +NG  +G + +   L + +R  RR  +++ EV V   R 
Sbjct: 498  IKKYRSQEEKSEDYENWSKVILNGRLIGYYPNGSELAEKIREKRREGELSDEVNVNYTRT 557

Query: 612  IRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYI 671
                E+ I +D GR  RPL +V   + L+ K DI  L++ +   D     L+ +G IE++
Sbjct: 558  ETYNEVYINSDSGRVRRPLIVVRHGKPLVTKEDIENLKKGKITFD----TLIREGKIEFL 613

Query: 672  DTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
            D EEEE   I+          L P++   D +TH EI    ILG+ ASIIP+P+HNQSPR
Sbjct: 614  DAEEEENAYIA----------LEPKDVTKD-HTHLEIWTPAILGITASIIPYPEHNQSPR 662

Query: 732  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
            NTYQSAM KQA+G+Y  NYQ R DT A++L+YPQKP+V TRA+E + + + PAG NAI A
Sbjct: 663  NTYQSAMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIGYTERPAGNNAIFA 722

Query: 792  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 851
            +  Y+GYN ED+VIMN+SSI+RG FRS FFR Y  EE K     +++   P+     G +
Sbjct: 723  LMSYTGYNMEDAVIMNKSSIERGMFRSTFFRLYSAEEIKYPGGQEDEILLPE-PGVRGYK 781

Query: 852  HGSYDKL-DDDGLAPPGTRVSGEDVIIGKTTP---------ISQDEAQGQASRYTRRDHS 901
               Y +L + +G+  P   V G DV+IGK +P         +S D+A        +RD S
Sbjct: 782  GKDYYRLLESNGIVSPEVDVKGGDVLIGKVSPPRFLQEFKELSPDQA--------KRDTS 833

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
            I  RH E G VD VL+T  ++G + VKVRVR +RIP+IGDKF++RHGQKG VGM   Q D
Sbjct: 834  IITRHGERGTVDLVLVTETSEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVVGMIIPQVD 893

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MP+T  G+TPDII+NPHA+PSRMT+GQ++E + GK  A  G+  DATPF ++ ++ I K 
Sbjct: 894  MPYTTSGLTPDIILNPHALPSRMTVGQIMEALSGKFVAATGESIDATPFYNIPIEEIQKK 953

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
            L   GY   G E +Y+G TG +L   I  G  YYQ+L HMV DK+H RGRGPVQILTRQP
Sbjct: 954  LLNSGYLGDGSEVVYDGRTGEKLKGRILFGIVYYQKLHHMVADKMHGRGRGPVQILTRQP 1013

Query: 1082 AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNS 1141
             EGR+R+GGLRFGEMERDC+I +GA+  +K+RL D SD   V+VCE CG +   +  KN 
Sbjct: 1014 TEGRAREGGLRFGEMERDCLIGYGAAMLIKDRLLDNSDKATVYVCEQCGYVGWYDRSKNK 1073

Query: 1142 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
            + C    +K+ +  V + YA KLL QELM+M IAP+++  E
Sbjct: 1074 YICPIHGDKSTLYPVAVSYAFKLLLQELMSMVIAPKLVLGE 1114


>gi|123979372|gb|ABM81511.1| RNA polymerase II second largest subunit [Rhizocarpon superficiale]
          Length = 703

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/706 (62%), Positives = 543/706 (76%), Gaps = 48/706 (6%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL GLFR LF+KL++DV  Y+QKCV+  ++ NL   +K+ T+TSGLKYSLAT
Sbjct: 2    KRLDLAGPLLAGLFRTLFKKLSKDVFKYLQKCVEQNREFNLTLGVKSTTLTSGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   +  EE  P   P ATKIFVN
Sbjct: 122  PAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMVQRSMDLLEEYEPQSYPNATKIFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 634
            G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++  
Sbjct: 182  GVWVGVHRDPAHLVSTIQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDND 241

Query: 635  -----KQRLLIKKRDIIALQQ------------RESPEDGGWHDLVAKGFIEYIDTEEEE 677
                 +  L++ K+ I  L++            RES +  GW  LV +G +EY+D EEEE
Sbjct: 242  PRSPNRGSLVLTKQHIQKLEEDHEIGADMDPGERES-KFMGWEGLVNQGVVEYVDAEEEE 300

Query: 678  TTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSLILG 715
            T MI MT  DL                      V+A ++P    A T+THCEIHPS+ILG
Sbjct: 301  TVMIVMTPADLEISRQLQQGYTLPEASDDPNRRVKAPMNPT---AHTWTHCEIHPSMILG 357

Query: 716  VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 775
            +CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQ PL TTR+ME
Sbjct: 358  ICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQNPLATTRSME 417

Query: 776  HLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 835
             L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSS+DRG FRSLF+R+Y D+EK++GT V
Sbjct: 418  FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSVDRGLFRSLFYRAYTDQEKRVGTSV 477

Query: 836  KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR 894
             E F +P RS+T+ ++HG+YDKLDDDG+  PG R+SGED+IIGKT PI+ D E  GQ ++
Sbjct: 478  VEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRISGEDIIIGKTAPIAPDAEELGQRTK 537

Query: 895  -YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
             + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+
Sbjct: 538  LHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTI 597

Query: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV 1013
            G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDV
Sbjct: 598  GITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDV 657

Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
            TVD++S  L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+
Sbjct: 658  TVDSVSSLLREHGYQSRGFEVMYNGHTGRKLAAQVFLGPTYYQRLR 703


>gi|357216611|gb|AET71039.1| RNA polymerase II second largest subunit, partial [Trametes ectypa]
          Length = 680

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/680 (64%), Positives = 533/680 (78%), Gaps = 30/680 (4%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+  L  A+K  TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFQLGLAVKHNTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q     ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPANLVKTIKKLRRKDDISAEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIALQQ-RESPEDGG------WHDLVAKGFIEYIDTEEEETTMISMTIND 687
             Q+LL++K+ I  L + +E PE         W +L+  G IE +D EEEET MI MT  D
Sbjct: 240  NQQLLLQKKHIENLARGKEEPEKDAPKFEYKWDNLIKDGVIELLDAEEEETVMICMTPED 299

Query: 688  LVQARLH-----PEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            L  +RL      P E                A T+THCEIHPS+ILGVCASIIPFPDHNQ
Sbjct: 300  LENSRLQSAGIDPHENDGELDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQ 359

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360  SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 419

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            +VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R +T+
Sbjct: 420  VVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRDSTL 479

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 906
             M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ 
Sbjct: 480  RMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKS 539

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E G++DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540  TEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + G
Sbjct: 600  EGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKG 659

Query: 1027 YQMRGFETMYNGHTGRRLTA 1046
            YQ RG E MY+GHTGR++ A
Sbjct: 660  YQSRGLEIMYHGHTGRKIQA 679


>gi|52699820|gb|AAU86972.1| DNA-dependent RNA polymerase II second largest subunit [Gyromitra
            esculenta]
          Length = 699

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/699 (62%), Positives = 540/699 (77%), Gaps = 32/699 (4%)

Query: 399  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 458
            RLDLAGPLL GLFR L++KLT+DV  Y++KCV+  K+ NL  A+K+ TIT+GLKYSLATG
Sbjct: 1    RLDLAGPLLAGLFRTLWKKLTKDVYKYLEKCVETAKEFNLTLAVKSNTITNGLKYSLATG 60

Query: 459  NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 517
            NWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 61   NWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 120

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEGQACGLVKNL+LM YIT+G+  YP+++FL     E  EE  P   P ATK+FVNG
Sbjct: 121  AETPEGQACGLVKNLSLMSYITIGTPGYPLVDFLSSNDMELLEEYEPQRSPNATKVFVNG 180

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 637
             WVG HRDP ML K ++ +RR+  V+ EV ++RDIR +E +I+TD GR  RPLF+++   
Sbjct: 181  VWVGTHRDPLMLHKVVQDVRRQGVVSHEVSIIRDIRDREFKIFTDAGRVCRPLFVIDNDP 240

Query: 638  LLIKKRDIIALQQR-ESPEDG---------GWHDLVAKGFIEYIDTEEEETTMISMTIND 687
               ++  ++ L++  E  ED          GW  L+  G +EY+D EEEET MI MT  D
Sbjct: 241  RSERRGQLVLLKEHVEKLEDDHTLPVDERFGWEGLLYSGSVEYLDAEEEETAMIVMTPED 300

Query: 688  LVQARL------HPEEAY-------------ADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            L  +R        P + Y             A T+THCEIHPS+ILG+CASIIPFPDHNQ
Sbjct: 301  LEMSRQVQLGYEEPHDQYSAKRFKAPINAHTAHTWTHCEIHPSMILGICASIIPFPDHNQ 360

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMG++ TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 361  SPRNTYQSAMGKQAMGVFXTNFSERMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 420

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E+F +P RSNT+
Sbjct: 421  IVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRIGMQVVEEFEKPTRSNTL 480

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRH 906
             ++ G+Y+KLD+DGL  PG RVSGED+IIGKT PI+ D +  GQ  ++ T+RD S  LR 
Sbjct: 481  KLKQGTYEKLDEDGLVAPGVRVSGEDIIIGKTAPIAPDVDEMGQRQKFHTKRDVSTPLRS 540

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E G+VDQV+LTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGTVG+TY QEDMP+T 
Sbjct: 541  TENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTVGITYRQEDMPFTC 600

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTV+++S  L + G
Sbjct: 601  EGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVESVSTLLRQNG 660

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            YQ RGFE MYNG+TGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 661  YQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDK 699


>gi|237823479|pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|237823491|pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|237823507|pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|323462789|pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
            P21 Space Group
 gi|323462805|pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
            P21 Space Group
 gi|400260743|pdb|4AYB|B Chain B, Rnap At 3.2ang
 gi|400260760|pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|400260780|pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|219814433|gb|ACL36490.1| RNA polymerase subunit 2 [Sulfolobus shibatae B12]
          Length = 1131

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1177 (42%), Positives = 709/1177 (60%), Gaps = 81/1177 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ++ ++ W VI AYF+ KGLVRQ LDS+++F++N +QEI+DE  +I         PG    
Sbjct: 8    LSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI-----PTEIPG---- 58

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                  K+  G+I + KP + ESD     + P  ARLRNLTY+APL++ +    ++   +
Sbjct: 59   -----LKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIP--VENNIE 111

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
             E         +V+IG +PIML+S+   + Q +   L E+GE P D GGYFI+NGSE+V+
Sbjct: 112  AEP-------EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVI 164

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            + QE ++ N V V   +  +   + A++ S + +  R P T+          K G+    
Sbjct: 165  VTQEDLAPNRVLVDTGKTGSNITHTAKIIS-STAGYRVPVTI-------ERLKDGT---- 212

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
               + P +  +IP +I+ RALG + D+DI+  +  D    ++   L PSLE+A  I N  
Sbjct: 213  FHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVD 269

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
             ALD+IG R A +G  R+ RI+ A++I+ K  LPH+GT      KKAYY  Y I +++  
Sbjct: 270  DALDFIGSRVA-IGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIEL 328

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
             LGRR  DD+DHY NKRL LAG L   LFR+ F+   +D+   ++K    G+ + L+  +
Sbjct: 329  YLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALV 388

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            +   +T  ++++LATGNW      G R GVSQ+L+R  + S LSHLRR+ S + R     
Sbjct: 389  RPDIVTERIRHALATGNW-----VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNF 443

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            + R LH +QWG MCP ETPEG   GLVKNLALM  I VG     + + L E G    EE+
Sbjct: 444  EARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINEKIVEKTLYEMGVVPVEEV 503

Query: 563  SPAVIP---------QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV---VR 610
               V           + +K+ +NG  VG +RD E L K +R  RR+ +++ EV V   V 
Sbjct: 504  IRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRKGEISDEVNVGHIVT 563

Query: 611  DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG---WHDLVAKGF 667
            D  + E+ +  D GR  RPL IV     L+ + DI  L       D G   + DLV +G 
Sbjct: 564  DF-INEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKL-------DSGSITFDDLVRQGK 615

Query: 668  IEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 727
            IEY+D EEEE   +++  +DL      PE      +TH EI    ILG+ ASIIP+P+HN
Sbjct: 616  IEYLDAEEEENAYVALEPSDLT-----PE------HTHLEIWSPAILGITASIIPYPEHN 664

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAM KQA+G+Y  NYQ R DT A++L+YPQ+PLV TRA++ + +   PAG N
Sbjct: 665  QSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNN 724

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AI+A+  ++GYN EDS+IMN+SS++RG +RS FFR Y  EE K     ++    P+    
Sbjct: 725  AILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPE-PGV 783

Query: 848  MGMRHGSYDKL-DDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASRYTRRDHSISLR 905
             G +   Y +L +D+G+  P   V G DV+IGK +P     E +  +    +RD SI  R
Sbjct: 784  RGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTR 843

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
            H E G+VD VL+T  A+G + VKVRVR +RIP IGDKF+SRHGQKG +GM   Q DMP+T
Sbjct: 844  HGEMGIVDLVLITETAEGNKLVKVRVRDLRIPSIGDKFASRHGQKGVIGMLIPQVDMPYT 903

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
            V+G+ PD+I+NPHA+PSRMT+GQ++E I GK AA  G   DATPF    ++ +   + K 
Sbjct: 904  VKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILKY 963

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GY     E  Y+G TG+++ + I+ G  YYQ+L HMV DKIH+R RGPVQILTRQP EGR
Sbjct: 964  GYLPDATEVTYDGRTGQKIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGR 1023

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECR 1145
            +R+GGLRFGEMERDC+I  G +  LK+RL D SD   ++VC+ CG I   +  KN + C 
Sbjct: 1024 AREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYVCP 1083

Query: 1146 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
               +K+++  V + YA KLL QELM+M I+PR++ ++
Sbjct: 1084 IHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLILED 1120


>gi|357216613|gb|AET71040.1| RNA polymerase II second largest subunit, partial [Trametes
            conchifer]
          Length = 679

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/680 (64%), Positives = 532/680 (78%), Gaps = 30/680 (4%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+  L  A+K  TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFQLGLAVKHNTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q     ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPANLVKTIKKLRRKDDISAEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIALQQ-RESPEDGG------WHDLVAKGFIEYIDTEEEETTMISMTIND 687
             Q+LL++K+ I  L + +E PE         W +L+  G IE +D EEEET MI MT  D
Sbjct: 240  NQQLLLQKKHIENLARGKEEPEKDSPKFEYKWDNLIKDGVIELLDAEEEETVMICMTPED 299

Query: 688  LVQARLHPE-------------------EAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            L  +RL  E                      A T+THCEIHPS+ILGVCASIIPFPDHNQ
Sbjct: 300  LENSRLQSEGIDPHANDGELDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQ 359

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360  SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 419

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            +VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R +T+
Sbjct: 420  VVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRDSTL 479

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 906
             M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ 
Sbjct: 480  RMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKS 539

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E G++DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540  TEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + G
Sbjct: 600  EGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKG 659

Query: 1027 YQMRGFETMYNGHTGRRLTA 1046
            YQ RG E MY+GHTGR++ A
Sbjct: 660  YQSRGLEIMYHGHTGRKIQA 679


>gi|52699904|gb|AAU87013.1| DNA-dependent RNA polymerase II second largest subunit [Umbilicaria
            muehlenbergii]
          Length = 709

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/712 (61%), Positives = 540/712 (75%), Gaps = 46/712 (6%)

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G KR DLAGPLL GLFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ T+T+GLKY
Sbjct: 1    HFGKKRXDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTLTNGLKY 60

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            SLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 61   SLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 120

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            G++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATK
Sbjct: 121  GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEYEPQRSPNATK 180

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            +FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+
Sbjct: 181  VFVNGVWVGVHRDPAHLVSTVQSLRRRNLISHEVSLVRDIRDREFKIFTDAGRVCRPLFV 240

Query: 633  VEKQ-------RLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDTE 674
            ++          L++ K  I  L+  +       PE+      GW  LV +G +EY+D E
Sbjct: 241  IDNDPKSPNNGNLVLTKEHINRLEDDKDLGPDTDPEEKAAKFMGWEGLVKQGVVEYVDAE 300

Query: 675  EEETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSL 712
            EEET MI MT  DL                      V+A ++P    A T+THCEIHPS+
Sbjct: 301  EEETVMIVMTPEDLEISRQIQAGYAMPETTDDPNKRVKAPMNPT---AHTWTHCEIHPSM 357

Query: 713  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 772
            ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG ++TN+  RMDT+A +LYYPQKPL TTR
Sbjct: 358  ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGXFLTNFDXRMDTMANILYYPQKPLATTR 417

Query: 773  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 832
            +ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R Y D+EK++G
Sbjct: 418  SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDQEKRIG 477

Query: 833  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ 891
              V E   +P RS+T+ + HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ
Sbjct: 478  MSVVEQXEKPMRSDTLRLXHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQ 537

Query: 892  ASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
             ++ + +RD S  LR +E G+VDQVL TTNA+GLRFV VR+R+ +IPQIGDKF+SRHGQK
Sbjct: 538  RTKSHVKRDVSTPLRSTENGIVDQVLXTTNAEGLRFVXVRMRTTKIPQIGDKFASRHGQK 597

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GT+G+TY  EDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPF
Sbjct: 598  GTIGITYRSEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPF 657

Query: 1011 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
            T+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 658  TEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 709


>gi|103001854|gb|ABF71524.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            discurrens]
          Length = 702

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/702 (63%), Positives = 535/702 (76%), Gaps = 40/702 (5%)

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
            LAGPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSLATGNWG
Sbjct: 1    LAGPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSLATGNWG 60

Query: 462  -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 520
             Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 61   DQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 120

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WV
Sbjct: 121  PEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWV 180

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 636
            G+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++      
Sbjct: 181  GVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKST 240

Query: 637  ---RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMIS 682
                L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEEET MI 
Sbjct: 241  NCGNLVLTKEHINKLEDDRDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIV 300

Query: 683  MTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPF 723
            MT  DL     +QA     EA  D              T+THCEIHPS+ILG+CASIIPF
Sbjct: 301  MTPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPF 360

Query: 724  PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 783
            PDHNQSPRNTYQSAMG QAMG    NY  RMDT+A +LYYPQKPL TTR+ME L FR+LP
Sbjct: 361  PDHNQSPRNTYQSAMGXQAMGXXXXNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELP 420

Query: 784  AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 843
            AG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P 
Sbjct: 421  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPM 480

Query: 844  RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHS 901
            RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S
Sbjct: 481  RSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVS 540

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
              LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 541  TPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQED 600

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK 
Sbjct: 601  MPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKL 660

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD
Sbjct: 661  LREHGYQSRGFEAMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 702


>gi|88601064|gb|ABD46528.1| RNA polymerase II second largest subunit, partial [Tulasnella sp.
            FCUG 2668]
          Length = 670

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/671 (65%), Positives = 525/671 (78%), Gaps = 21/671 (3%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL GLFRMLF+KLT+DV  ++QKCV+  KD  L   +K  TIT 
Sbjct: 2    DDRDHFGKKRLDLAGPLLAGLFRMLFKKLTKDVFRHLQKCVETHKDFTLGAXVKNTTITQ 61

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  +  ++AGVSQVLNR T+ASTLSHLRR N+P+GREGK+AKPRQLH
Sbjct: 62   GLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLH 121

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WGM+CPAETPEGQACGLVKNLALM  I+VG+ + PI+EFL+EW  E  EE +     
Sbjct: 122  NTHWGMVCPAETPEGQACGLVKNLALMSCISVGTLSAPIIEFLQEWDIEPLEEHANGA-- 179

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATK+FVNG WVG+HRD + LV TLRRLRR+ D++ EV +VRDIR +ELR+YTD GR  R
Sbjct: 180  GATKVFVNGVWVGVHRDAQELVMTLRRLRRKDDISAEVSIVRDIRERELRLYTDAGRVCR 239

Query: 629  PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            PLFIVE   LLI+KR +  LQ+    +  GW +L+  G IE +D EEEET MI MT  DL
Sbjct: 240  PLFIVENHELLIRKRHVRQLQENSPEQPYGWTNLLHDGVIELLDAEEEETVMICMTPEDL 299

Query: 689  VQARLHPEEAYAD----------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
              +    +E   D                T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 300  ENSLRTKDEFMQDADYDVAKRVKATMNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 359

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMGIY+TNYQ RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA VAI
Sbjct: 360  TYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNATVAI 419

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
             CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK+G L  E+F +P R  T+ M+H
Sbjct: 420  LCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYTDAEKKVGILPLEEFEKPTRDTTLRMKH 479

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 910
            G+Y+KL+DDGL  PGT V+GED+IIGKT P+  D E  GQ  R +TRRD S  L+ +E G
Sbjct: 480  GTYEKLEDDGLIAPGTGVTGEDIIIGKTAPLPPDSEELGQRLRSHTRRDVSTPLKSTENG 539

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQVL+TTN DGL+FVK+R+RS RIPQ+GDKF+SRHGQKGTVG+TY  EDMP+T EGIT
Sbjct: 540  IVDQVLVTTNGDGLKFVKIRIRSTRIPQVGDKFASRHGQKGTVGITYRHEDMPFTAEGIT 599

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDII+NPHAIPSRMTIG LIEC++ K+A  +G EGDATPFT++TV+++S+ L + GYQ R
Sbjct: 600  PDIIINPHAIPSRMTIGHLIECLLSKLATLIGNEGDATPFTELTVESVSELLRQHGYQSR 659

Query: 1031 GFETMYNGHTG 1041
            G E MY+GHTG
Sbjct: 660  GLEVMYHGHTG 670


>gi|111183476|gb|ABH07989.1| RNA polymerase II second largest subunit, partial [Tilletiopsis
            minor]
          Length = 695

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/696 (62%), Positives = 545/696 (78%), Gaps = 31/696 (4%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLD+AGPLL GLFRMLFRKLTRD+  ++QKCV+  KD ++  A+KA TIT+GLKYS+
Sbjct: 1    GKKRLDMAGPLLAGLFRMLFRKLTRDIYRHLQKCVEEKKDFHITQAVKAATITNGLKYSI 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q      RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNL+LM  I+VGS ++PI+EFL+E+G ++ E++  A   +ATK+F
Sbjct: 121  VCPAETPEGQACGLVKNLSLMSTISVGSPSFPIIEFLQEFGLDSLEDMQVAS-SKATKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G H DP  LV  +R LRR+ D++TEV +V DIR KELR+YTD GR  RPLFIV+
Sbjct: 180  VNGVWMGTHDDPGTLVSFIRELRRKDDISTEVSMVHDIREKELRLYTDAGRVLRPLFIVD 239

Query: 635  KQR--LLIKKRDIIALQQRESP--EDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 690
            +    L IK++ +  L  +++P  ++  W++LV    IEY+D EEEETT+I M+  DL  
Sbjct: 240  QDTMTLRIKRQHMDWLHDQQTPDGQEWKWNELVTNALIEYLDAEEEETTLICMSPTDLEN 299

Query: 691  ARLHPEEAYA----------------------DTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            +R++ ++  +                       T+THCEIHP++ILG+CASIIPFP HNQ
Sbjct: 300  SRVYNQDPKSYVGPRSTRDPSARLVSTAFFAPKTWTHCEIHPAMILGICASIIPFPXHNQ 359

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMG+Y+TNYQ RMDT+A +LYYPQKPL TTR+MEHL FR+LPAG NA
Sbjct: 360  SPRNTYQSAMGKQAMGVYLTNYQMRMDTMANILYYPQKPLATTRSMEHLRFRELPAGQNA 419

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            IVAI CYSGYNQEDSVIM+QS+IDRG FRSL++R+Y D EKK+G ++ E F +P R  T+
Sbjct: 420  IVAILCYSGYNQEDSVIMSQSAIDRGLFRSLYYRTYTDMEKKLGVIMLETFEKPTRDTTL 479

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD--EAQGQASRYTRRDHSISLRH 906
             M+HG+YDKLD+DGL  PGTRVSGED+IIGKTTP+  D  E   +++ +T+RD S  L+ 
Sbjct: 480  RMKHGTYDKLDEDGLVAPGTRVSGEDIIIGKTTPLPPDTEELGLRSASHTKRDVSTPLKS 539

Query: 907  SETGMVDQVLLTTNAD-GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
            +E G+VDQVLLT + D   RFVKVRVRS R+PQ GDKF+SRHGQKGT+G+TY QEDMP+T
Sbjct: 540  TENGIVDQVLLTVSHDHSQRFVKVRVRSTRVPQTGDKFASRHGQKGTIGITYRQEDMPFT 599

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
             EG+TPDII+NPHAIPSRMTIG L+EC++ KVA   G+EGDATPFTD+TV+ +S+ L + 
Sbjct: 600  REGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDATPFTDLTVEAVSEILREM 659

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 1061
            GYQ RG E MYNGHTGR+L A ++LGPTYYQRLKHM
Sbjct: 660  GYQSRGLEVMYNGHTGRKLQAQVYLGPTYYQRLKHM 695


>gi|113957845|gb|ABI49126.1| RNA polymerase II second largest subunit [Ramalina complanata]
          Length = 709

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/711 (62%), Positives = 539/711 (75%), Gaps = 48/711 (6%)

Query: 402  LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
            LAGPLL GLFRMLF KLT+DV  Y+Q+CV+N K+ NL  A+K+ T+T+GLKYSLATGNWG
Sbjct: 1    LAGPLLEGLFRMLFYKLTKDVYKYLQRCVENNKEFNLTLAVKSTTLTNGLKYSLATGNWG 60

Query: 462  -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 520
             Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAET
Sbjct: 61   DQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 120

Query: 521  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWV 580
            PEGQACGLVKNLALM YITVG+   PI++F+ +   E  EE  P   P ATKIFVNG WV
Sbjct: 121  PEGQACGLVKNLALMCYITVGTPGQPIVDFMMQRQMELLEEYEPLSNPNATKIFVNGVWV 180

Query: 581  GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ---- 636
            G+H  P +L  T+  LRR+  ++ EV +VRDIR +E +I+TD GR  RPLF+VE      
Sbjct: 181  GVHSQPAILTATVMSLRRKGLISYEVSLVRDIRDREFKIFTDAGRVCRPLFVVESNPRDQ 240

Query: 637  ---RLLIKKRDIIAL------------QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMI 681
                L++ K D+  L            Q RE  +  GW  LV  G +EY+D EEEET MI
Sbjct: 241  NFGNLVLTKHDVQELDHNRELISSMDAQDRED-QAIGWQGLVKNGKVEYVDAEEEETIMI 299

Query: 682  SMTINDL------------------------VQARLHPEEAYADTYTHCEIHPSLILGVC 717
             MT  DL                         + ++ P+ A    +THCEIHPS+ILG+C
Sbjct: 300  VMTPEDLEISKHYSTYGDDALAGDDNKDDPNKRMKVRPK-AIRQAWTHCEIHPSMILGIC 358

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L
Sbjct: 359  ASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTRSMEFL 418

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
             FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E
Sbjct: 419  KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVE 478

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-Y 895
             F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ +
Sbjct: 479  QFEKPMRSDTLSLKHGTYDKLDDDGIVSPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLH 538

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
             +RD S  LR +E G+VDQVLL+TN+DGLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 539  VKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 598

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1015
            TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTV
Sbjct: 599  TYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTV 658

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            D++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 659  DSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 709


>gi|300394682|gb|ADK11879.1| DNA-directed RNA polymerase II subunit two, partial [Boletus edulis]
          Length = 673

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/674 (65%), Positives = 528/674 (78%), Gaps = 26/674 (3%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFRMLF+KLTRDV  Y+QKCV+  K+ NL  A+K +TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WGM+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  T
Sbjct: 121  WGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSATP-CT 179

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLF
Sbjct: 180  KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLF 239

Query: 632  IVEKQRLLIKKRDIIALQQRESPEDG---GWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
            IVE Q+L ++K+ I  L Q     DG    W  LV  G IE +D EEEET MISMT  DL
Sbjct: 240  IVENQQLALQKKHIKWLNQGYRDGDGEEFKWEQLVKTGIIELLDAEEEETVMISMTPEDL 299

Query: 689  VQARL-----HPEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQS 729
              +RL     +P E                A T+THCEIHPS+ILGVCASIIPFPDHNQS
Sbjct: 300  ENSRLQSAGINPHENDGEFDPAARLKAGINAHTWTHCEIHPSMILGVCASIIPFPDHNQS 359

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAI
Sbjct: 360  PRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAI 419

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            VAI CYSGYNQEDSVIMNQSSIDRG FRS+++R Y D EKK G    E+F +P R  T+ 
Sbjct: 420  VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRGYMDLEKKSGIQQLEEFEKPTRDTTLR 479

Query: 850  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHS 907
            M+HG+YDKL+DDGL  PGT V GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +
Sbjct: 480  MKHGTYDKLEDDGLIAPGTNVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKST 539

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E G+VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T E
Sbjct: 540  ENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAE 599

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
            GI PD+++NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S  L + GY
Sbjct: 600  GIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGY 659

Query: 1028 QMRGFETMYNGHTG 1041
            Q RG E MY+G+TG
Sbjct: 660  QSRGLEVMYHGYTG 673


>gi|103001903|gb|ABF71526.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            flavum]
          Length = 699

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/699 (63%), Positives = 535/699 (76%), Gaps = 40/699 (5%)

Query: 403  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 461
            AGPLL  LFRMLF KLT+DV  Y+QKCV++G++ NL   +K+ TIT+GLKYSLATGNWG 
Sbjct: 1    AGPLLANLFRMLFNKLTKDVYKYLQKCVESGREFNLTLGVKSTTITNGLKYSLATGNWGD 60

Query: 462  QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
            Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 61   QKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 120

Query: 522  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
            EGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG
Sbjct: 121  EGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVG 180

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----- 636
            +HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++       
Sbjct: 181  VHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTN 240

Query: 637  --RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISM 683
               L++ K         RD+ A+   E  E    GW  LV  G +EY+D EEEET MI M
Sbjct: 241  CGNLVLTKEHINKLEDDRDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVM 300

Query: 684  TINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFP 724
            T  DL     +QA     EA  D              T+THCEIHPS+ILG+CASIIPFP
Sbjct: 301  TPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFP 360

Query: 725  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
            DHNQSPRNTYQSAMG QAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 361  DHNQSPRNTYQSAMGXQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPA 420

Query: 785  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 844
            G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P R
Sbjct: 421  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMR 480

Query: 845  SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 902
            S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ + +RD S 
Sbjct: 481  SDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLHVKRDVST 540

Query: 903  SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
             LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 541  PLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDM 600

Query: 963  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1022
            P+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L
Sbjct: 601  PFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLL 660

Query: 1023 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHM 1061
             + GYQ RGFE MYNGHTGR+L A +FLGPTYYQR +HM
Sbjct: 661  REHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRXRHM 699


>gi|46411502|gb|AAS94321.1| RNA polymerase II [Punctelia hypoleucites]
          Length = 705

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/705 (62%), Positives = 544/705 (77%), Gaps = 41/705 (5%)

Query: 403  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 461
            AGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+GL+YSLATGNWG 
Sbjct: 1    AGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTNGLRYSLATGNWGD 60

Query: 462  QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
            Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 61   QKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 120

Query: 522  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
            EGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATKIFVNG WVG
Sbjct: 121  EGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSPNATKIFVNGVWVG 180

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------- 634
            +HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  RPLF+++       
Sbjct: 181  VHRDPAHLVGTVQNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCRPLFVIDNDPRSSN 240

Query: 635  KQRLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEYIDTEEEETTMISM 683
            +  L++ K  +  L+  RE+     P+     D GW  LV +G +EY+D EEEET MI M
Sbjct: 241  RGNLVLTKEHVQKLELDRENWATTEPDVREETDMGWQGLVKEGVVEYVDAEEEETIMIVM 300

Query: 684  TINDLVQAR----------LHPEE----------AYADTYTHCEIHPSLILGVCASIIPF 723
            T  DL  +R           +P+E            A T+THCEIHPS+ILG+CASIIPF
Sbjct: 301  TPEDLEISRQLQAGYAMPEANPDELNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPF 360

Query: 724  PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 783
            PDHNQSPRNTYQSAMGKQAMG+++TNY+ RMDT+A +LYYPQKPL TTR+ME L FR+LP
Sbjct: 361  PDHNQSPRNTYQSAMGKQAMGVFLTNYEQRMDTMANILYYPQKPLATTRSMEFLKFRELP 420

Query: 784  AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 843
            AG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F +P 
Sbjct: 421  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVEQFEKPM 480

Query: 844  RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHS 901
            RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S
Sbjct: 481  RSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDTS 540

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
              LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 541  TPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQED 600

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDATPFT+VTVD++S+ 
Sbjct: 601  MPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDATPFTEVTVDSVSRL 660

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+HMVDDKI
Sbjct: 661  LREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQRLRHMVDDKI 705


>gi|227828173|ref|YP_002829953.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.14.25]
 gi|229585402|ref|YP_002843904.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.16.27]
 gi|238620363|ref|YP_002915189.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.16.4]
 gi|385773843|ref|YP_005646410.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
 gi|385776478|ref|YP_005649046.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
 gi|227459969|gb|ACP38655.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.14.25]
 gi|228020452|gb|ACP55859.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.27]
 gi|238381433|gb|ACR42521.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.4]
 gi|323475226|gb|ADX85832.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
 gi|323477958|gb|ADX83196.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
          Length = 1131

 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1177 (42%), Positives = 708/1177 (60%), Gaps = 81/1177 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ++ ++ W VI AYF+ KGLVRQ LDS+++F++N +QEI+DE  +I         PG    
Sbjct: 8    LSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI-----PTEIPG---- 58

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                  K+  G+I + KP + ESD     + P  ARLRNLTY+APL++ +    ++   +
Sbjct: 59   -----LKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIP--VENNIE 111

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
             E         +V+IG +PIML+S+   + Q +   L E+GE P D GGYFI+NGSE+V+
Sbjct: 112  AEP-------EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVI 164

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            + QE ++ N V V   +  +   + A++ S + +  R P T+          K G+    
Sbjct: 165  VTQEDLAPNRVLVDTGKTGSNITHTAKIIS-STAGYRVPVTI-------ERLKDGT---- 212

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
               + P +  +IP +I+ RALG + D+DI+  +  D    ++   L PSLE+A  I N  
Sbjct: 213  FHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVD 269

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
             ALD+IG R A +G  R+ RI+ A++I+ K  LPH+GT      KKAYY  Y I +++  
Sbjct: 270  DALDFIGSRVA-IGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIEL 328

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
             LGRR  DD+DHY NKRL LAG L   LFR+ F+   +D+   ++K    G+ + L+  +
Sbjct: 329  YLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALV 388

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            +   +T  ++++LATGNW      G R GVSQ+L+R  + S LSHLRR+ S + R     
Sbjct: 389  RPDIVTERIRHALATGNW-----VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNF 443

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            + R LH +QWG MCP ETPEG   GLVKNLALM  I VG     + + L E G    EE+
Sbjct: 444  EARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVEEV 503

Query: 563  SPAVIP---------QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV---VR 610
               V           + +K+ +NG  VG +RD E L K +R  RR  +++ EV V   V 
Sbjct: 504  IRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRNGEISDEVNVGHIVT 563

Query: 611  DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG---WHDLVAKGF 667
            D  + E+ +  D GR  RPL IV     L+ + DI  L       D G   + DLV +G 
Sbjct: 564  DF-INEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKL-------DSGSITFDDLVRQGK 615

Query: 668  IEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 727
            IEY+D EEEE   +++  +DL      PE      +TH EI    ILG+ ASIIP+P+HN
Sbjct: 616  IEYLDAEEEENAYVALEPSDLT-----PE------HTHLEIWSPAILGITASIIPYPEHN 664

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAM KQA+G+Y  NYQ R DT A++L+YPQ+PLV TRA++ + +   PAG N
Sbjct: 665  QSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNN 724

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AI+A+  ++GYN EDS+IMN+SS++RG +RS FFR Y  EE K     ++    P+    
Sbjct: 725  AILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPE-PGV 783

Query: 848  MGMRHGSYDKL-DDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASRYTRRDHSISLR 905
             G +   Y +L +D+G+  P   V G DV+IGK +P     E +  +    +RD SI  R
Sbjct: 784  RGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTR 843

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
            H E G+VD VL+T  A+G + VKVRVR +RIP IGDKF+SRHGQKG +GM   Q DMP+T
Sbjct: 844  HGEMGIVDLVLITETAEGNKLVKVRVRDLRIPSIGDKFASRHGQKGVIGMLIPQVDMPYT 903

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
            V+G+ PD+I+NPHA+PSRMT+GQ++E I GK AA  G   DATPF    ++ +   + K 
Sbjct: 904  VKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILKY 963

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GY     E  Y+G TG+++ + I+ G  YYQ+L HMV DKIH+R RGPVQILTRQP EGR
Sbjct: 964  GYLPDATEVTYDGRTGQKIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGR 1023

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECR 1145
            +R+GGLRFGEMERDC+I  G +  LK+RL D SD   ++VC+ CG I   +  KN + C 
Sbjct: 1024 AREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYICP 1083

Query: 1146 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
               +K+++  V + YA KLL QELM+M I+PR++ ++
Sbjct: 1084 IHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLILED 1120


>gi|52699776|gb|AAU86950.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            hilaris]
          Length = 726

 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/726 (61%), Positives = 546/726 (75%), Gaps = 60/726 (8%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YI+VG+ + PI++F+ +   E  EE  P   P ATK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQRNMEVLEEYEPQRSPNATKVFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVG+H DP  LV T++ +RR   ++ EV +VRDIR +E +I+TD GR  RPLF+++  
Sbjct: 182  GVWVGVHSDPVHLVNTVQAVRRGHMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDND 241

Query: 637  -------RLLIKKRDIIALQQRE--SPE-----------------DG---GWHDLVAKGF 667
                    L++ K  I  L+  +  S E                 DG   GW+ L+ +G 
Sbjct: 242  PKSPRCGSLVLTKEHINKLEDYKDLSAEMQEKIREKEEVEKEVKEDGTPYGWNGLIKRGV 301

Query: 668  IEYIDTEEEETTMISMTINDL-------------------------VQARLHPEEAYADT 702
            +EY+D EEEET MI MT  DL                         V+A ++P    A T
Sbjct: 302  VEYVDAEEEETVMIVMTPEDLEISRQLQAGYVLPEPSDTSEALMKRVKAPMNPT---AHT 358

Query: 703  YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 762
            +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+ +T Y+ RMDT+A +LY
Sbjct: 359  WTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVXLTXYEQRMDTMANILY 418

Query: 763  YPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR 822
            YPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R
Sbjct: 419  YPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYR 478

Query: 823  SYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
            SY D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT P
Sbjct: 479  SYTDQEKRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAP 538

Query: 883  ISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 940
            I+ D E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIG
Sbjct: 539  IAPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIG 598

Query: 941  DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 1000
            DKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++ 
Sbjct: 599  DKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSL 658

Query: 1001 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             G EGDATPFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 659  RGFEGDATPFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 718

Query: 1061 MVDDKI 1066
            MVD KI
Sbjct: 719  MVDXKI 724


>gi|52699908|gb|AAU87015.1| DNA-dependent RNA polymerase II second largest subunit [Xanthomendoza
            fallax]
          Length = 717

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/720 (60%), Positives = 541/720 (75%), Gaps = 47/720 (6%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            D  G KRLD AGPLL GLFRMLF+KLT+D+  Y+QKCV++ ++ NL   +K  T++SGLK
Sbjct: 1    DXXGKKRLDXAGPLLAGLFRMLFQKLTKDIYKYLQKCVESNREFNLTLGVKQNTLSSGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YI+VG+ A PI+++L   G EN EE  PA  P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCYISVGTPADPIIDYLSNRGMENLEEYEPARSPHAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNG W+G+H DP  LV  ++ +RR+  +  E  +VRDIR +E +I+TD GR  RPLF
Sbjct: 181  KIFVNGTWIGVHNDPANLVPHIQDVRRKGIIAHEASLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVEKQ----------------RLLIKKRDIIALQQRESPEDG--GWHDLVAKGFIEYIDT 673
            +++                  + L  +RD++     E   D   GW  LV  G IEY+D 
Sbjct: 241  VIDNDPRSENMGNLALTKDMVQKLEDERDVVLTMDPEERADHVIGWEALVDAGAIEYVDA 300

Query: 674  EEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCEIHP 710
            EEEET MI+MT  DL                       V+A L+P    A T+THCEIHP
Sbjct: 301  EEEETIMIAMTPEDLEISRQIQAGYAAPVPSEDAPNQRVKAPLNPT---AHTWTHCEIHP 357

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRNTYQSAMG QAMG+++T Y  RMDT+A +LYYPQKPL T
Sbjct: 358  SMILGICASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTXYDERMDTMANILYYPQKPLAT 417

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D EK+
Sbjct: 418  TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDTEKR 477

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
            +G  V E F +P R+ T+ ++HG+YDKLDDDGL  PG RVSGEDVIIGKTTPI+ D +  
Sbjct: 478  VGMTVLEKFEKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGKTTPIAPDAQEM 537

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ ++ + ++D S  LR +E G+VD+VLL+TN++GL+FVKVR+R+ ++PQIGDKF+SRHG
Sbjct: 538  GQRTKNHVKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVPQIGDKFASRHG 597

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDAT
Sbjct: 598  QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDAT 657

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            PFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV  KI +
Sbjct: 658  PFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVXXKIXA 717


>gi|119644045|gb|ABL85603.1| RNA polymerase II second largest subunit [Hypotrachyna caraccensis]
          Length = 708

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/708 (62%), Positives = 541/708 (76%), Gaps = 41/708 (5%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+
Sbjct: 1    DDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GL+YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATKIFVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  R
Sbjct: 181  NATKIFVNGVWVGVHRDPAHLVGTVQNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCR 240

Query: 629  PLFIVE-------KQRLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEY 670
            PLF+++       +  L++ K  +  L+  RE+     P+     D GW  LV +G +EY
Sbjct: 241  PLFVIDNDPRSSNRGNLVLTKEHVQKLELDRENWATTEPDVREEADMGWQGLVKEGVVEY 300

Query: 671  IDTEEEETTMISMTINDL-----VQARLHPEEAYAD---------------TYTHCEIHP 710
            +D EEEET MI MT  DL     +QA     EA  D               T+THCEIHP
Sbjct: 301  VDAEEEETIMIVMTPEDLEISRQLQAGFDMPEANPDELNKRVKAPMNPTAHTWTHCEIHP 360

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG    NY+ RMDT+A +LYYPQKPL T
Sbjct: 361  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGXXSYNYEQRMDTMANILYYPQKPLAT 420

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK+
Sbjct: 421  TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKR 480

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
            +G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481  IGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEEL 540

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541  GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDAT
Sbjct: 601  QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            PFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L   IFLGPTYYQ
Sbjct: 661  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQIFLGPTYYQ 708


>gi|113957206|gb|ABI49109.1| RNA polymerase II second largest subunit [Pyxine subcinerea]
          Length = 709

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/709 (61%), Positives = 539/709 (76%), Gaps = 41/709 (5%)

Query: 399  RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 458
            RLDLAGPLL GLFR LF KL +DV  Y++ C++N ++ NL   +K+ TIT+GLKYSLATG
Sbjct: 1    RLDLAGPLLAGLFRTLFNKLNKDVEKYLKNCIENNREFNLTLGVKSTTITNGLKYSLATG 60

Query: 459  NWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 517
            NWG Q  A+ ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CP
Sbjct: 61   NWGEQKKASSSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 120

Query: 518  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG 577
            AETPEGQACGLVKNLALM Y++VG+ +  I+EFL     E  EE  P   P ATKIFVNG
Sbjct: 121  AETPEGQACGLVKNLALMCYVSVGTPSEGIVEFLLSRQMEPLEEYDPLASPHATKIFVNG 180

Query: 578  CWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ- 636
             WVGIHR+P  LV  ++ LRRR  +  EV ++RDIR +E +I TD GR  RPLF+VE   
Sbjct: 181  VWVGIHRNPAHLVLAVQSLRRRHVIEHEVSLIRDIRDREFKILTDQGRVLRPLFVVENDA 240

Query: 637  ------RLLIKKRDIIALQ-QRESPEDG----------GWHDLVAKGFIEYIDTEEEETT 679
                   L++ K  +  L+  R+ P D           GWH L+  G +EY+D EEEET 
Sbjct: 241  KEQNYGNLVLTKEHVEKLEADRDVPLDMDKEEREQLTFGWHGLINAGVVEYVDAEEEETI 300

Query: 680  MISMTINDLVQAR------LHPEE--------------AYADTYTHCEIHPSLILGVCAS 719
            MI MT  DL  +R      + PEE                A T+THCEIHPS+ILG+CAS
Sbjct: 301  MIVMTPYDLNVSRQIQAGYVLPEENDENPNRRVKAPINPTAHTWTHCEIHPSMILGLCAS 360

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQS MGKQAMG+++TN+  RM+T++++LYYPQKPL TTR+ME L F
Sbjct: 361  IIPFPDHNQSPRNTYQSXMGKQAMGVFLTNFDQRMETMSHILYYPQKPLATTRSMEFLKF 420

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EKK+G    E F
Sbjct: 421  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKIGMYTMEQF 480

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTR 897
             +P RS+T+ ++HG+Y+KLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +
Sbjct: 481  EKPLRSDTLKLKHGTYEKLDDDGIIIPGARVSGEDIIIGKTAPIAPDAEELGQRTKLHNK 540

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR +E+G+VDQVLLT N++GLRFVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY
Sbjct: 541  RDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITY 600

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1017
             QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+
Sbjct: 601  RQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATPFTDVTVDS 660

Query: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            +S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661  VSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 709


>gi|52699825|gb|AAU86974.1| DNA-dependent RNA polymerase II second largest subunit [Lasallia
            pennsylvanica]
          Length = 716

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/717 (61%), Positives = 538/717 (75%), Gaps = 46/717 (6%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ T+T+GLK
Sbjct: 1    DHFGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTLTNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPQRSPNAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF
Sbjct: 181  KVFVNGVWVGVHRDPAHLVSTVQSLRRRSLISHEVSLVRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVEKQ-------RLLIKKRDIIALQQRES------PEDG-----GWHDLVAKGFIEYIDT 673
            +++          L++ K  I  L+  +       PE+      GW  LV +G +EY+D 
Sbjct: 241  VIDNDPKSPNNGNLVLTKEHINRLEDDKDLGPDTDPEERTAKYMGWEGLVKQGVVEYVDA 300

Query: 674  EEEETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPS 711
            EEEET MI MT  DL                      V+A ++P    A T+THCEIHPS
Sbjct: 301  EEEETVMIVMTPEDLEISRQIQAGYTMPETTDDPNKRVKAPMNPT---AHTWTHCEIHPS 357

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            +ILG+CASIIPFPDHNQSPRNTYQSAMG QAMG+++TN+  RMDT+A +LYYPQ PL TT
Sbjct: 358  MILGICASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNFDQRMDTMANILYYPQXPLATT 417

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            R+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R Y D+EK++
Sbjct: 418  RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDQEKRI 477

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 890
            G  V E F +P RS+T+  +HG+Y KLDDDG   PG RV GEDVIIGKT PI+   E  G
Sbjct: 478  GMSVVEQFEKPMRSDTLRXKHGTYXKLDDDGXVAPGVRVXGEDVIIGKTAPIAPXAEELG 537

Query: 891  QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            Q ++ + +RD S  LR +E G VDQV LT NA+GLRFVKVR R+   PQIGDKF+SRHGQ
Sbjct: 538  QRTKSHIKRDVSXPLRSTEXGXVDQVXLTXNAEGLRFVKVRXRTTXXPQIGDKFASRHGQ 597

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGT+G+TY  EDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATP
Sbjct: 598  KGTIGITYRXEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECXLXKVSSLRGFEGDATP 657

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            FT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 658  FTEVTVDSVSRXLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 714


>gi|300394668|gb|ADK11872.1| DNA-directed RNA polymerase II subunit two, partial [Athelia sp.
            HHB-15599]
          Length = 676

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/676 (64%), Positives = 530/676 (78%), Gaps = 25/676 (3%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM+C
Sbjct: 62   GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE Q
Sbjct: 181  GVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQ 240

Query: 637  RLLIKKRDIIALQQ--RESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 694
            +L ++K+ +  + +   +  E+  W  LV  G +E +D EEEET MISMT  DL  +RL 
Sbjct: 241  QLALQKKHVHWINRGYDDDNEEFKWEQLVKSGIVELLDAEEEETVMISMTPEDLENSRLQ 300

Query: 695  -------------------PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
                                      T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ
Sbjct: 301  LSGVDTTQNDGEFDPAARLKAGTNTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 360

Query: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
            SAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CY
Sbjct: 361  SAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCY 420

Query: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
            SGYNQEDSVIMNQSS+DRG FRS+++RSY D EKK G    E+F +P R NT+ M+HG+Y
Sbjct: 421  SGYNQEDSVIMNQSSVDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLRMKHGTY 480

Query: 856  DKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVD 913
            DK++DDGL  PGT VSGED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+VD
Sbjct: 481  DKIEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVD 540

Query: 914  QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
            QVL+TTN++G +FVKVRVR+ RIPQIGDKF+SRHGQKGTVG+TY QEDMP+T EGI PDI
Sbjct: 541  QVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDI 600

Query: 974  IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
            I+NPHAIPSRMTIG LIEC++ KVA  +G EGDATPFTD+TV+++S  L + GYQ RG E
Sbjct: 601  IINPHAIPSRMTIGHLIECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLE 660

Query: 1034 TMYNGHTGRRLTAMIF 1049
             MY+GH+GR+L A ++
Sbjct: 661  VMYHGHSGRKLQAQVY 676


>gi|52699796|gb|AAU86960.1| DNA-dependent RNA polymerase II second largest subunit [Cudonia
            circinans]
          Length = 718

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/716 (61%), Positives = 543/716 (75%), Gaps = 42/716 (5%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            DH+G KRLDLAGPLL  LFR L+++LT DV  Y+Q CV+   + NL  A+K+ TIT+GLK
Sbjct: 1    DHFGKKRLDLAGPLLAKLFRNLWKRLTGDVYKYLQTCVEKQSEFNLTLAVKSSTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA + AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNL+LM Y+TVG+ + PI+EF+ + G +  EE  P   P +T
Sbjct: 121  WGLVCPAETPEGQACGLVKNLSLMCYVTVGTPSDPIVEFMIQRGMDVLEEYEPLRSPNST 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG+H  P  LV+ ++ LRR+  ++ EV ++RDIR +E +++TD GR  RPLF
Sbjct: 181  KVFVNGVWVGVHSHPARLVRNVQGLRRQHLISHEVSLIRDIRDREFKVFTDAGRVCRPLF 240

Query: 632  IVE-------KQRLLIKKRDI------------IALQQRESPEDGGWHDLVAKGFIEYID 672
            IVE       K  L++ K  I            +AL+ +      G++ L+  G +EY+D
Sbjct: 241  IVETDEESPNKGNLVLNKDHIKKLEDDQAMPLQMALEVKNKHGYFGFNGLLDSGVVEYVD 300

Query: 673  TEEEETTMISMTINDL-----VQARLH---------------PEEAYADTYTHCEIHPSL 712
             EEEET MI MT  DL     +QA L                P    A  +THCEIHPS+
Sbjct: 301  AEEEETIMIVMTPEDLEISRQIQAGLEQLPDDSGDLNKRVKAPVNPTAHIWTHCEIHPSM 360

Query: 713  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 772
            ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT+A +LYYPQKPL TTR
Sbjct: 361  ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTR 420

Query: 773  AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMG 832
            +ME L FR+LPAG NAIVAIACY+GYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G
Sbjct: 421  SMEFLKFRELPAGQNAIVAIACYAGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRVG 480

Query: 833  TLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQ 891
                E F +P+RS+T+ ++  +YDKLD+DG+  PG RVSGED+IIGKT PI+ D E  GQ
Sbjct: 481  MATIESFEKPNRSDTIRLKTATYDKLDEDGIVSPGVRVSGEDIIIGKTAPIAPDAEELGQ 540

Query: 892  ASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 950
             ++ +T+RD S  LR +E G+VDQVLLTTNADGLRFVKVR+R+ +IPQIGDKF+SRHGQK
Sbjct: 541  RTKAHTKRDASTPLRSTENGIVDQVLLTTNADGLRFVKVRMRTTKIPQIGDKFASRHGQK 600

Query: 951  GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 1010
            GTVG+TY QEDMP+T EGI PDII+NPHAIPSRMTI  LIEC + KV+   G EGDATPF
Sbjct: 601  GTVGITYRQEDMPFTREGIVPDIIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDATPF 660

Query: 1011 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            T+VTVD++SK L   GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDKI
Sbjct: 661  TEVTVDSVSKLLRDHGYQSRGFEIMYNGHTGRKLRAQVFLGPTYYQRLRHMVDDKI 716


>gi|229579766|ref|YP_002838165.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
            Y.G.57.14]
 gi|229581565|ref|YP_002839964.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
            Y.N.15.51]
 gi|228010481|gb|ACP46243.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.G.57.14]
 gi|228012281|gb|ACP48042.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.N.15.51]
          Length = 1131

 Score =  910 bits (2352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1177 (42%), Positives = 708/1177 (60%), Gaps = 81/1177 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ++ ++ W VI AYF+ KGLVRQ LDS+++F++N +QEI+DE  +I         PG    
Sbjct: 8    LSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI-----PTEIPG---- 58

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                  K+  G+I + KP + ESD     + P  ARLRNLTY+APL++ +    ++   +
Sbjct: 59   -----LKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIP--VENNIE 111

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
             E         +V+IG +PIML+S+   + Q +   L E+GE P D GGYFI+NGSE+V+
Sbjct: 112  AEP-------EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVI 164

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            + QE ++ N V V   +  +   + A++ S + +  R P T+          K G+    
Sbjct: 165  VTQEDLAPNRVLVDTGKTGSNITHTAKIIS-STAGYRVPVTI-------ERLKDGT---- 212

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
               + P +  +IP +I+ RALG + D+DI+  +  D    ++   L PSLE+A  I N  
Sbjct: 213  FHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVD 269

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
             ALD+IG R A +G  R+ RI+ A++I+ K  LPH+GT      KKAYY  Y I +++  
Sbjct: 270  DALDFIGSRVA-IGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIEL 328

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
             LGRR  DD+DHY NKRL LAG L   LFR+ F+   +D+   ++K    G+ + L+  +
Sbjct: 329  YLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALV 388

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            +   +T  ++++LATGNW      G R GVSQ+L+R  + S LSHLRR+ S + R     
Sbjct: 389  RPDIVTERIRHALATGNW-----VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNF 443

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            + R LH +QWG MCP ETPEG   GLVKNLALM  I VG     + + L E G    EE+
Sbjct: 444  EARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVEEV 503

Query: 563  SPAVIP---------QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV---VR 610
               V           + +K+ +NG  VG +RD E L K +R  RR  +++ EV V   V 
Sbjct: 504  IRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRNGEISDEVNVGHIVT 563

Query: 611  DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG---WHDLVAKGF 667
            D  + E+ +  D GR  RPL IV     L+ + DI  L       D G   + DLV +G 
Sbjct: 564  DF-INEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKL-------DSGSITFDDLVRQGK 615

Query: 668  IEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 727
            IEY+D EEEE   +++  +DL      PE      +TH EI    ILG+ ASIIP+P+HN
Sbjct: 616  IEYLDAEEEENAYVALEPSDLT-----PE------HTHLEIWSPAILGITASIIPYPEHN 664

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAM KQA+G+Y  NYQ R DT A++L+YPQ+PLV TRA++ + +   PAG N
Sbjct: 665  QSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNN 724

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AI+A+  ++GYN EDS+IMN+SS++RG +RS FFR Y  EE K     ++    P+    
Sbjct: 725  AILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPE-PGV 783

Query: 848  MGMRHGSYDKL-DDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASRYTRRDHSISLR 905
             G +   Y +L +D+G+  P   V G DV+IGK +P     E +  +    +RD SI  R
Sbjct: 784  RGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTR 843

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
            H E G+VD VL+T  A+G + VKVRVR +R+P IGDKF+SRHGQKG +GM   Q DMP+T
Sbjct: 844  HGEMGIVDLVLITETAEGNKLVKVRVRDLRVPSIGDKFASRHGQKGVIGMLIPQVDMPYT 903

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
            V+G+ PD+I+NPHA+PSRMT+GQ++E I GK AA  G   DATPF    ++ +   + K 
Sbjct: 904  VKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILKY 963

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GY     E  Y+G +G+++ + I+ G  YYQ+L HMV DKIH+R RGPVQILTRQP EGR
Sbjct: 964  GYLPDATEVTYDGRSGQKIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGR 1023

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECR 1145
            +R+GGLRFGEMERDC+I  G +  LK+RL D SD   ++VC+ CG I   +  KN + C 
Sbjct: 1024 AREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYICP 1083

Query: 1146 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
               +K+++  V + YA KLL QELM+M I+PR++ ++
Sbjct: 1084 IHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLILED 1120


>gi|357216643|gb|AET71055.1| RNA polymerase II second largest subunit, partial [Trametes maxima]
          Length = 676

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/677 (64%), Positives = 531/677 (78%), Gaps = 30/677 (4%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K  TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNL+LM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIAL---QQRESPEDGG----WHDLVAKGFIEYIDTEEEETTMISMTIND 687
             Q+LL++K+ I  L   ++    ED      W +L+  G IE +D EEEET MI MT  D
Sbjct: 240  NQQLLLQKKHIENLVRGKEEAGKEDPAVIYKWDNLIKDGVIELLDAEEEETVMICMTPED 299

Query: 688  LVQARL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQ 728
            L  +RL       H  +   D            T+THCEIHPS+ILGVCASIIPFPDHNQ
Sbjct: 300  LENSRLQAAGTDPHANDGEVDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIPFPDHNQ 359

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NA
Sbjct: 360  SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNA 419

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            +VAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+
Sbjct: 420  VVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPTRDTTL 479

Query: 849  GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRH 906
             M+HG+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +T+RD S  L+ 
Sbjct: 480  RMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKS 539

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
            +E G++DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T 
Sbjct: 540  TEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA 599

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            EGITPDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFTD+TV+++S+ L + G
Sbjct: 600  EGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQKG 659

Query: 1027 YQMRGFETMYNGHTGRR 1043
            YQ RG E MY+GHTGR+
Sbjct: 660  YQSRGLEVMYHGHTGRK 676


>gi|103001177|gb|ABF71496.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            molybdina]
          Length = 709

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/707 (62%), Positives = 534/707 (75%), Gaps = 40/707 (5%)

Query: 400  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 459
            LDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TI++GLKYSLATGN
Sbjct: 1    LDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTISNGLKYSLATGN 60

Query: 460  WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
            WG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPA
Sbjct: 61   WGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 120

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG 
Sbjct: 121  ETPEGQACGLVKNLALMCYITVGTPSEPIIEFMVQRNMEVLEEYEPQRSPNATKVFVNGV 180

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-- 636
            WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+VE    
Sbjct: 181  WVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPK 240

Query: 637  -----RLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDTEEEETTM 680
                  L++ K  I  L+  ++ P             GW  LV  G +EY+D EEEET M
Sbjct: 241  STHCGNLVLTKEHINKLEDDKDLPPTAEGEEKDAKFFGWDGLVNNGVVEYVDAEEEETVM 300

Query: 681  ISMT-------------------INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
            I MT                    +DL++    P    A T+THCEIHPS+ILG+CASII
Sbjct: 301  IVMTPEDLEISRQIQAGYTIPETSDDLIKRVKAPMNPTAHTWTHCEIHPSMILGICASII 360

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMG         MDT+A +LYYPQKPL TTR+ME L FR+
Sbjct: 361  PFPDHNQSPRNTYQSAMGKQAMGXXXXXXXXXMDTMANILYYPQKPLATTRSMEFLKFRE 420

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +
Sbjct: 421  LPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRVGMSVVEQFEK 480

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRD 899
            P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ + +RD
Sbjct: 481  PMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKLHVKRD 540

Query: 900  HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 959
             S  LR +E G+VDQVL+TTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY Q
Sbjct: 541  CSTPLRSTENGIVDQVLITTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQ 600

Query: 960  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 1019
            EDMP+T +G+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++S
Sbjct: 601  EDMPFTKDGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVS 660

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            K L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD KI
Sbjct: 661  KLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKI 707


>gi|52699894|gb|AAU87008.1| DNA-dependent RNA polymerase II second largest subunit [Taphrina
            communis]
          Length = 731

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/729 (59%), Positives = 539/729 (73%), Gaps = 55/729 (7%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            D  G KR+D AGPLL GLFRMLF++LT+D+R Y+ KCVD+GK+ NL  A+K  TIT+GL+
Sbjct: 1    DXXGKKRIDXAGPLLAGLFRMLFKRLTKDIRQYMTKCVDSGKEFNLPLAVKHTTITNGLR 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATG WG Q      R GVSQVLNR TYASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGTWGDQKKQMNARVGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM Y++VGSA+ PI+EFLEEWG E+ E+ +P+    +T
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMSYVSVGSASAPIIEFLEEWGMESLEDYNPSAGRPST 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            KIFVNG W+G+H DP  LVKTLR LRR+ D++ EV VVRDIR KELR++TD GR  RPLF
Sbjct: 181  KIFVNGVWLGVHSDPGHLVKTLRSLRRKTDISPEVSVVRDIREKELRLFTDAGRVCRPLF 240

Query: 632  IV--------------EKQRLLIKKRDIIALQ-QRESPEDG---GWHDLVAKGFIEYIDT 673
            +V              E   L++KK  +  +   +E PED    GW  +++ G  EY+D 
Sbjct: 241  VVHDDESAESDPTGESEAGSLVLKKEHVQRMAYSKEHPEDEDKFGWSQVLSNGIAEYLDA 300

Query: 674  EEEETTMISMTINDLVQAR------LHPE-EAYADT------------------------ 702
            EEEET MI+MT +DL   +      + PE E  AD                         
Sbjct: 301  EEEETVMIAMTPDDLEATKHMMAGYVEPEVEEPADADERERKIAAEAAKRLRPAVNKAQH 360

Query: 703  -YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
             +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG     YQ RMDT+A +L
Sbjct: 361  LWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGXXXXXYQVRMDTMANIL 420

Query: 762  YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
            YYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQSSIDRG FRS+F+
Sbjct: 421  YYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSMIMNQSSIDRGLFRSMFY 480

Query: 822  RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
            R Y+D E+K+     ++F +P R  TM M+  +YDKL+DDGL  PGTRVSGEDVI+GKT 
Sbjct: 481  RVYQDSEEKIDMNQAQEFEKPTRETTMRMKRSTYDKLEDDGLVAPGTRVSGEDVIVGKTA 540

Query: 882  PISQDEAQ----GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
             + +DE       +++  T+RD S  LR +E G++D+V+++TN+DG +FVKVR+R+ +IP
Sbjct: 541  GLLKDENSADLAARSATQTKRDVSTQLRSTEAGIIDKVMVSTNSDGHKFVKVRIRATKIP 600

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKF+SRHGQKGT+G+TY  EDMP+T EGI PD+I+NPHAIPSRMT+  L+EC + KV
Sbjct: 601  QIGDKFASRHGQKGTIGVTYRNEDMPFTSEGIVPDLIINPHAIPSRMTVAHLVECQLSKV 660

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
             +  G EGDATPFTDVTV+ +S  L + GY  RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 661  GSLSGFEGDATPFTDVTVEAVSNNLREQGYHSRGFEIMYNGHTGRKLMAQVFLGPTYYQR 720

Query: 1058 LKHMVDDKI 1066
            LKH+VDDKI
Sbjct: 721  LKHLVDDKI 729


>gi|284998387|ref|YP_003420155.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
 gi|284446283|gb|ADB87785.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
          Length = 1131

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1177 (42%), Positives = 708/1177 (60%), Gaps = 81/1177 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ++ ++ W VI AYF+ KGLVRQ LDS+++F++N +QEI+DE  +I         PG    
Sbjct: 8    LSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI-----PTEIPG---- 58

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                  K+  G+I + KP + ESD     + P  ARLRNLTY+APL++ +    ++   +
Sbjct: 59   -----LKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIP--VENNIE 111

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
             E         +V+IG +PIML+S+   + Q +   L E+GE P D GGYFI+NGSE+V+
Sbjct: 112  AEP-------EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVI 164

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            + QE ++ N V V   +  +   + A++ S + +  R P T+          K G+    
Sbjct: 165  VTQEDLAPNRVLVDTGKTGSNITHTAKIIS-STAGYRVPVTI-------ERLKDGT---- 212

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
               + P +  +IP +I+ RALG + D+DI+  +  D    ++   L PSLE+A  I N  
Sbjct: 213  FHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVD 269

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
             ALD+IG R A +G  R+ RI+ A++I+ K  LPH+GT      KKAYY  Y I +++  
Sbjct: 270  DALDFIGSRVA-IGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIEL 328

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
             LGRR  DD+DHY NKRL LAG L   LFR+ F+   +D+   ++K    G+ + L+  +
Sbjct: 329  YLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALV 388

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            +   +T  ++++LATGNW      G R GVSQ+L+R  + S LSHLRR+ S + R     
Sbjct: 389  RPDIVTERIRHALATGNW-----VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNF 443

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            + R LH +QWG MCP ETPEG   GLVKNLALM  I VG     + + L E G    EE+
Sbjct: 444  EARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVEEV 503

Query: 563  SPAVIP---------QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV---VR 610
               V           + +K+ +NG  VG +RD E L K +R  RR  +++ EV V   V 
Sbjct: 504  IRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRNGEISDEVNVGHIVT 563

Query: 611  DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG---WHDLVAKGF 667
            D  + E+ +  D GR  RPL IV     L+ + DI  L       D G   + DLV +G 
Sbjct: 564  DF-INEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKL-------DSGSITFDDLVRQGK 615

Query: 668  IEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 727
            IEY+D EEEE   +++  +DL      PE      +TH EI    ILG+ ASIIP+P+HN
Sbjct: 616  IEYLDAEEEENGYVALEPSDLT-----PE------HTHLEIWSPAILGITASIIPYPEHN 664

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAM KQA+G+Y  NYQ R DT A++L+YPQ+PLV TRA++ + +   PAG N
Sbjct: 665  QSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNN 724

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AI+A+  ++GYN EDS+IMN+SS++RG +RS FFR Y  EE K     ++    P+    
Sbjct: 725  AILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPE-PGV 783

Query: 848  MGMRHGSYDKL-DDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASRYTRRDHSISLR 905
             G +   Y +L +D+G+  P   V G DV+IGK +P     E +  +    +RD SI  R
Sbjct: 784  RGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTR 843

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
            H E G+VD VL+T  A+G + VKVRVR +R+P IGDKF+SRHGQKG +GM   Q DMP+T
Sbjct: 844  HGEMGIVDLVLITETAEGNKLVKVRVRDLRVPSIGDKFASRHGQKGVIGMLIPQVDMPYT 903

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
            V+G+ PDII+NPHA+PSRMT+GQ++E I GK AA  G   DATPF    ++ +   + K 
Sbjct: 904  VKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILKY 963

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GY     E  Y+G +G+++ + I+ G  YYQ+L HMV DKIH+R RGPVQILTRQP EGR
Sbjct: 964  GYLPDATEVTYDGRSGQKIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGR 1023

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECR 1145
            +R+GGLRFGEMERDC+I  G +  LK+RL D SD   ++VC+ CG I   +  KN + C 
Sbjct: 1024 AREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYICP 1083

Query: 1146 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
               +K+++  V + YA KLL QELM+M I+PR++ ++
Sbjct: 1084 IHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLILED 1120


>gi|52699890|gb|AAU87006.1| DNA-dependent RNA polymerase II second largest subunit [Strangospora
            pinicola]
          Length = 703

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/705 (61%), Positives = 538/705 (76%), Gaps = 42/705 (5%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL GLFRMLF KLT+DV  Y+QKCV+N K+ NL  A+K+ T+T+GLKYSLAT
Sbjct: 2    KRLDLAGPLLAGLFRMLFNKLTKDVYKYLQKCVENNKEFNLTLAVKSTTLTNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATKIFVN
Sbjct: 122  PAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLSSPNATKIFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVG+HRDP  LV T+  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF+++++
Sbjct: 182  GVWVGVHRDPAHLVSTVLNLRRRGLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVIDQK 241

Query: 637  --RLLIKKRDIIALQQ---------RESPEDG--GWHDLVAKGFIEYIDTEEEETTMISM 683
              +L++ K  I  L++          +  ED   GW  LV  G +EY+D EEEET MI M
Sbjct: 242  TGQLVLTKGHIAKLEEDKELGLSMDAQEKEDKLMGWQGLVKSGVVEYVDAEEEETIMIVM 301

Query: 684  TINDL-----------------------VQARLHPEEAYADTYTHCEIHPSLILGVCASI 720
            T +DL                       V+A L+P    A T+THCEIHPS+ILG+CASI
Sbjct: 302  TPDDLDISRQIQAGYSIPEANPDDLNKRVKAPLNPT---AHTWTHCEIHPSMILGICASI 358

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSA        ++TNY+ RMDT++ +LYYPQKPL TT +ME+L FR
Sbjct: 359  IPFPDHNQSPRNTYQSAXXXXXXXXFLTNYEARMDTMSNILYYPQKPLATTSSMEYLKFR 418

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
             LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E F 
Sbjct: 419  DLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQFE 478

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRR 898
            +P R+ T  M+HG+YDKLD+DG+  PG R+SGED+IIGKT P++ D E  GQ ++ + +R
Sbjct: 479  KPIRNETFKMKHGTYDKLDEDGIVAPGIRISGEDIIIGKTAPMTADAEELGQRTKAHQKR 538

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  LR +E G+VDQVLLTTNA+G+RFVKVR R  ++PQIGDKF+SRHGQKGT+G+TY 
Sbjct: 539  DTSTPLRTTENGIVDQVLLTTNAEGMRFVKVRTRMTKVPQIGDKFASRHGQKGTIGITYR 598

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
            QEDMP+T EG+ PDII+NPHAIPSRMTI  LIEC + KV++  G+EGDATPFT+VTVD++
Sbjct: 599  QEDMPFTSEGLVPDIIINPHAIPSRMTIAHLIECQLSKVSSLTGREGDATPFTEVTVDSV 658

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVD 1063
            SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD
Sbjct: 659  SKLLRENGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 703


>gi|396941928|gb|AFN89681.1| RNA polymerase II, partial [Spencermartinsiella europaea]
          Length = 687

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/687 (63%), Positives = 531/687 (77%), Gaps = 34/687 (4%)

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H+G KRLDLAGPLL  LFRMLF+KLTRD+  Y+QKCV+  KD NL  A+K+ TIT+GLKY
Sbjct: 1    HFGKKRLDLAGPLLANLFRMLFKKLTRDIYRYMQKCVETNKDFNLTLAVKSNTITNGLKY 60

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            SLATGNWG Q  A  ++AGVSQVLNR T++STLSHLRR N+PIGR+GK+A+PRQLHN+ W
Sbjct: 61   SLATGNWGDQKKAMSSKAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKIARPRQLHNTHW 120

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            G++CPAETPEGQACGLVKNL+LM  I+VG+ + PI+ FLEEWG E  E+  P   P AT+
Sbjct: 121  GLVCPAETPEGQACGLVKNLSLMSCISVGTPSQPIVYFLEEWGMEPLEDYVPHASPNATR 180

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            IFVNG W+G+HRDP  LV T+R LRR+ D++ EV ++RDIR KE RI+TD GR  RPLF+
Sbjct: 181  IFVNGVWIGVHRDPAHLVDTMRALRRKGDISPEVSIIRDIREKEFRIFTDAGRVYRPLFL 240

Query: 633  VE-------KQRLLIKKRDIIAL-QQRESPEDG----GWHDLVAKGFIEYIDTEEEETTM 680
            V+       K  L ++K  I  L    E  E G    GW  LV+ G +EYID EEEET M
Sbjct: 241  VDNDEESDRKGELKLRKEHIYQLLNNEEDAETGEPVFGWSSLVSNGVVEYIDGEEEETIM 300

Query: 681  ISMTINDLVQARL----------HPEEA---------YADTYTHCEIHPSLILGVCASII 721
            I+MT  DL  +R            P+ A          A T+THCEIHPS+ILG+CASII
Sbjct: 301  IAMTPEDLELSRQMQSGVEVSDDDPDPARRVRPAYNPNAQTWTHCEIHPSMILGICASII 360

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME + FR+
Sbjct: 361  PFPDHNQSPRNTYQSAMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRSMEFMKFRE 420

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAG NAIVAI CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D+E+++G  V E+F +
Sbjct: 421  LPAGQNAIVAILCYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQERRIGMSVVEEFEK 480

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRD 899
            P R++T+ ++HG+YDKLD+DGL PPG RVSGED+IIGKT PI  D E  GQ S+Y T+RD
Sbjct: 481  PTRADTLRLKHGTYDKLDEDGLIPPGVRVSGEDIIIGKTAPIPPDTEELGQRSKYHTKRD 540

Query: 900  HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 959
             S  LR +E+G+VDQVLLTTN +GL+FVKVR+R+ ++PQIGDKF+SRHGQKGT+G+TY  
Sbjct: 541  ASTPLRSTESGIVDQVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRH 600

Query: 960  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 1019
            EDMP+T EG+ PD+I+NPHAIPSRMT+  LIEC++ KV++  G EGDATPFTDVTVD IS
Sbjct: 601  EDMPFTSEGVVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDATPFTDVTVDAIS 660

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTA 1046
            K L +  Y  RGFE MYNGHTG++L A
Sbjct: 661  KLLREHKYHSRGFEVMYNGHTGKKLVA 687


>gi|103001369|gb|ABF71504.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 699

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/702 (62%), Positives = 537/702 (76%), Gaps = 46/702 (6%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ TIT+GLKYS
Sbjct: 1    FGKKRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTITNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+
Sbjct: 121  LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKV 180

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181  FVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 634  EKQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEE 675
            +          L++ K         +D+ A+   E  E    GW  LV  G +EY+D EE
Sbjct: 241  DNDPKSTNCGNLVLTKEHINKLEDDKDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEE 300

Query: 676  EETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPSLI 713
            EET MI MT  DL                      V+A ++P    A T+THCEIHPS+I
Sbjct: 301  EETVMIVMTPEDLEISRQIQAGYAMPETSDDPNKRVKAPMNPT---AHTWTHCEIHPSMI 357

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+
Sbjct: 358  LGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRS 417

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G 
Sbjct: 418  MEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGM 477

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQA 892
             V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ 
Sbjct: 478  SVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQR 537

Query: 893  SR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
            ++ + +RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKG
Sbjct: 538  TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 597

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T+G+TY QEDMP+T+EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT
Sbjct: 598  TIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFT 657

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1053
            +VTVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPT
Sbjct: 658  EVTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 699


>gi|156937444|ref|YP_001435240.1| DNA-directed RNA polymerase subunit B [Ignicoccus hospitalis KIN4/I]
 gi|156566428|gb|ABU81833.1| DNA-directed RNA polymerase, subunit B' [Ignicoccus hospitalis
            KIN4/I]
          Length = 1132

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1177 (42%), Positives = 718/1177 (61%), Gaps = 84/1177 (7%)

Query: 24   TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDF 83
            T ED WA++ AYF+EKGLV QQL+S+++F+  TMQ++++E  ++E               
Sbjct: 9    TPEDRWAIMRAYFKEKGLVSQQLESYNKFVTETMQKLIEELGEVEP-------------- 54

Query: 84   AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDG 143
             E+ YK+ F +I   +P++ E  G T  + P   R+R+LTY+AP+YV +  R  K     
Sbjct: 55   FESGYKLEFIKIRYGEPIIKEKSGGTRPVTPTECRIRDLTYAAPIYVYMRLRNPK----- 109

Query: 144  EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLI 203
                E +D   V IG +P+M+RS    L + S ++L E GE P D GGYFI++GSEKV++
Sbjct: 110  ---GEIKDEGWVEIGMMPVMVRSILDPLSKKSPEELVEAGEDPRDPGGYFIVDGSEKVIV 166

Query: 204  AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM-LSRTSAKGGSSGQY 262
             QE ++ N V V K    +   + A+V S         +T+  R+ +     K G+    
Sbjct: 167  TQEDLALNKVLVDKGGPQSTVTHTAKVLS---------TTLGYRVQVIVERQKDGT---- 213

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
            + A  P +  +IP++++ RALG  +DKDI   + +D +  Q  ELL PS+E+A  +    
Sbjct: 214  LHAIFPPLPGKIPLVVLIRALGIESDKDITSLVSFDPEVQQ--ELL-PSIEQAASVPTVD 270

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
             ALD+IG R A +G+ RDKRI+ AK++L   +LPH+G       KKA +  ++  +LL  
Sbjct: 271  DALDFIGARIA-IGMPRDKRIERAKQVLDNNLLPHLGKRPEDRIKKAIFLAHMARKLLEV 329

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD-VNLQFA 441
             L +R  DD+DHY N+RL LAG +L  LFR   R L  DV   +++ V  G++ + L+  
Sbjct: 330  YLEKREPDDKDHYANRRLKLAGDMLAALFRTHLRGLLNDVGYQLERSVLKGEERLKLRIL 389

Query: 442  IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 501
            I++  +T  ++ +LATGNW      G R GVSQ+L+R  + STLSHLRR+ SP+ R    
Sbjct: 390  IRSNYLTDKVRQALATGNW-----VGNRTGVSQLLDRTNWLSTLSHLRRVVSPLARNQPH 444

Query: 502  AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEE 561
             + R+LH +QWG +CP ETPEG   GLVKNLAL  +I+VG     + + L+E G    EE
Sbjct: 445  YEARELHMTQWGRICPFETPEGPNIGLVKNLALSAHISVGVPEEEVEKVLDELGVIRVEE 504

Query: 562  ISPAV-----IPQ----ATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV---- 608
            +   V     +P+      ++F+NG  VG ++D   L + +R+LRR+  ++ EV V    
Sbjct: 505  VLEKVKNDEPVPEEAISGARVFLNGRPVGYYKDAHELAQKIRQLRRQGKLHYEVSVGVYE 564

Query: 609  VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW--HDLVAKG 666
              D  +KE+ I TD GR  RP+F+VE   L +K   +      E  + G W   DL+ +G
Sbjct: 565  NDDGTIKEVYINTDPGRVMRPVFVVENGELKLKPEHV------EKVKKGEWTFKDLLMRG 618

Query: 667  FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
             +E +D +EEE  +I++   D+              +TH EI    + GV AS IP+ +H
Sbjct: 619  IVELLDADEEENALIAIEPEDI-----------TPKHTHMEIWVPAVFGVVASTIPYLEH 667

Query: 727  NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
            NQSPRN+YQSAM KQA+G+Y  N+  R DT  Y+L+YP+KPL  T+ +E + + + PAG 
Sbjct: 668  NQSPRNSYQSAMAKQALGLYAANFMLRTDTRGYLLHYPEKPLAQTKHLEIIGYNKRPAGQ 727

Query: 787  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM--GTLVKEDFGRPDR 844
            NA+ AI  Y+GYN ED++IMNQSSIDRGF R+ F R Y+ EE+K   G   K +  +PD+
Sbjct: 728  NAVAAILSYTGYNIEDAIIMNQSSIDRGFMRATFMRLYQTEEQKYPGGAEDKIEKPKPDQ 787

Query: 845  SNTMGMRH-GSYDKLDDDGLAPPGTRVSGEDVIIGKTTP--ISQDEAQGQASRYTRRDHS 901
               +GMR   +Y+KLD+DG+  P T V G DV+IGK++P   +++  +       RRD S
Sbjct: 788  -RLVGMREPKAYEKLDEDGIVEPETYVVGGDVLIGKSSPPRFTEEYKEMGILETRRRDAS 846

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
            +++RH E G+VD V+LT N DG++ VKVRVRS+RIP+IGDKF+SRHGQKG +GM     D
Sbjct: 847  VAVRHGEEGVVDTVILTENIDGIKMVKVRVRSLRIPEIGDKFASRHGQKGVIGMVLPHYD 906

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MP++  G+ PDII+NPHA PSRMT+GQLIE I  K AA  G+E DATPF    +DN+ K 
Sbjct: 907  MPYSEFGLVPDIILNPHAFPSRMTLGQLIESIAAKAAAFRGREVDATPFYKEPLDNLRKI 966

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
            L + G+   G E M++G TG  +   +F+G  +YQRL HMV DKIH+R RGPVQILTRQP
Sbjct: 967  LVERGFPPDGTEVMFDGRTGEMIARPVFIGVVFYQRLYHMVSDKIHARARGPVQILTRQP 1026

Query: 1082 AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNS 1141
             EGR+R GGLRFGEMERD ++AHGAS  L ERL   SDA +V VC  CG I   +  K  
Sbjct: 1027 TEGRTRKGGLRFGEMERDVLVAHGASQLLVERLLKSSDATKVWVCAKCGHIGWWDANKGK 1086

Query: 1142 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
              C     + ++ QV + YA KLL QE+++M IA R+
Sbjct: 1087 PVCPIHGERGEMYQVELSYAFKLLIQEILSMGIAARL 1123


>gi|123979364|gb|ABM81507.1| RNA polymerase II second largest subunit [Myelochroa aurulenta]
          Length = 704

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/703 (62%), Positives = 541/703 (76%), Gaps = 41/703 (5%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+GL+YSLAT
Sbjct: 2    KRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTNGLRYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATKIFVN
Sbjct: 122  PAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLSSPNATKIFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  RPLF+++  
Sbjct: 182  GVWVGVHRDPAHLVGTVQNLRRRGMISHEVSLVRDIRDREFKVFTDAGRVCRPLFVIDNN 241

Query: 637  -------RLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEYIDTEEEET 678
                    L++ K  +  L+  RE+     P+     D GW  LV +G +EY+D EEEET
Sbjct: 242  PSSDTRGNLVLTKEHVQKLEIDRENWATTEPDVRDQTDMGWQGLVKEGVVEYVDAEEEET 301

Query: 679  TMISMTINDLVQAR----------LHPEE----------AYADTYTHCEIHPSLILGVCA 718
             MI MT  DL  +R           +P+E            A T+THCEIHPS+ILG+CA
Sbjct: 302  IMIVMTPEDLEISRQLQAGYAMPEANPDELNKRVKAPMNPTAHTWTHCEIHPSMILGICA 361

Query: 719  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 778
            SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT+A +LYYPQKPL TTR+ME L 
Sbjct: 362  SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLK 421

Query: 779  FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 838
            FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK++G  V E 
Sbjct: 422  FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMSVVEQ 481

Query: 839  FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YT 896
            F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ ++ + 
Sbjct: 482  FEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHI 541

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T
Sbjct: 542  KRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 601

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDATPFT+VTVD
Sbjct: 602  YRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDATPFTEVTVD 661

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
            ++S+ L + GYQ RGFE MYNGHTGR+L   IFLGPTYYQRL+
Sbjct: 662  SVSRLLREHGYQSRGFEVMYNGHTGRKLVTQIFLGPTYYQRLR 704


>gi|227830880|ref|YP_002832660.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
            L.S.2.15]
 gi|227457328|gb|ACP36015.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus L.S.2.15]
          Length = 1131

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1177 (42%), Positives = 707/1177 (60%), Gaps = 81/1177 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            ++ ++ W VI AYF+ KGLVRQ LDS+++F++N +QEI+DE  +I         PG    
Sbjct: 8    LSIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI-----PTEIPG---- 58

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                  K+  G+I + KP + ESD     + P  ARLRNLTY+APL++ +    ++   +
Sbjct: 59   -----LKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIP--VENNIE 111

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
             E         +V+IG +PIML+S+   + Q +   L E+GE P D GGYFI+NGSE+V+
Sbjct: 112  AEP-------EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVI 164

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            + QE ++ N V V   +  +   + A++ S + +  R P T+          K G+    
Sbjct: 165  VTQEDLAPNRVLVDTGKTGSNITHTAKIIS-STAGYRVPVTI-------ERLKDGT---- 212

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
               + P +  +IP +I+ RALG + D+DI+  +  D    ++   L PSLE+A  I N  
Sbjct: 213  FHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVD 269

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
             ALD+IG R A +G  R+ RI+ A++I+ K  LPH+GT      KKAYY  Y I +++  
Sbjct: 270  DALDFIGSRVA-IGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIEL 328

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
             LGRR  DD+DHY NKRL LAG L   LFR+ F+   +D+   ++K    G+ + L+  +
Sbjct: 329  YLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALV 388

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            +   +T  ++++LATGNW      G R GVSQ+L+R  + S LSHLRR+ S + R     
Sbjct: 389  RPDIVTERIRHALATGNW-----VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNF 443

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            + R LH +QWG MCP ETPEG   GLVKNLALM  I VG     + + L E G    EE+
Sbjct: 444  EARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVEEV 503

Query: 563  SPAVIP---------QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV---VR 610
               V           + +K+ +NG  VG +RD E L K +R  RR  +++ EV V   V 
Sbjct: 504  IRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRNGEISDEVNVGHIVT 563

Query: 611  DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG---WHDLVAKGF 667
            D  + E+ +  D GR  RPL IV     L+ + DI  L       D G   + DLV +G 
Sbjct: 564  DF-INEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKL-------DSGSITFDDLVRQGK 615

Query: 668  IEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHN 727
            IEY+D EEEE   +++  +DL      PE      +TH EI    ILG+ ASIIP+P+HN
Sbjct: 616  IEYLDAEEEENAYVALEPSDLT-----PE------HTHLEIWSPAILGITASIIPYPEHN 664

Query: 728  QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 787
            QSPRNTYQSAM KQA+G+Y  NYQ R DT A++L+YPQ+PLV TRA++ + +   PAG N
Sbjct: 665  QSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNN 724

Query: 788  AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT 847
            AI+A+  ++GYN EDS+IMN+SS++RG +RS FFR Y  EE K     ++    P+    
Sbjct: 725  AILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPE-PGV 783

Query: 848  MGMRHGSYDKL-DDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASRYTRRDHSISLR 905
             G +   Y +L +D+G+  P   V G DV+IGK +P     E +  +    +RD SI  R
Sbjct: 784  RGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTR 843

Query: 906  HSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 965
            H E G+VD VL+T  A+G + VKVRVR +R+P IGDKF+SRHGQKG +GM   Q DMP+T
Sbjct: 844  HGEMGIVDLVLITETAEGNKLVKVRVRDLRVPSIGDKFASRHGQKGVIGMLIPQVDMPYT 903

Query: 966  VEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1025
            V+G+ PDII+NPHA+PSRMT+GQ++E I GK AA  G   DATP     ++ +   + K 
Sbjct: 904  VKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPIYKTPIEQLQNEILKY 963

Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
            GY     E  Y+G +G+++ + I+ G  YYQ+L HMV DKIH+R RGPVQILTRQP EGR
Sbjct: 964  GYLPDATEVTYDGRSGQKIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGR 1023

Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECR 1145
            +R+GGLRFGEMERDC+I  G +  LK+RL D SD   ++VC+ CG I   +  KN + C 
Sbjct: 1024 AREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYICP 1083

Query: 1146 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
               +K+++  V + YA KLL QELM+M I+PR++ ++
Sbjct: 1084 IHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLILED 1120


>gi|119644059|gb|ABL85604.1| RNA polymerase II second largest subunit [Hypotrachyna degelii]
          Length = 708

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/708 (62%), Positives = 541/708 (76%), Gaps = 41/708 (5%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DD DH+G KRLDLAGPLL  LFR  F KLT+DV  Y+QKCV+N K+ N+  A+K+  +T+
Sbjct: 1    DDSDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GL+YSLATGNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATKIFVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  R
Sbjct: 181  NATKIFVNGVWVGVHRDPAHLVGTVQNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCR 240

Query: 629  PLFIVE-------KQRLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEY 670
            PLF+++       +  L++ K  +  L+  RE+     P+     D GW  LV +G +EY
Sbjct: 241  PLFVIDNDPRSSNRGNLVLTKEHVQKLELDRENWATTEPDVREETDMGWQGLVEEGVVEY 300

Query: 671  IDTEEEETTMISMTINDLVQAR----------LHPEE----------AYADTYTHCEIHP 710
            +D EEEET MI MT  DL  +R           +P+E            A T+THCEIHP
Sbjct: 301  VDAEEEETIMIVMTPEDLEISRQLQAGYAMPEANPDELNKRVKAPMNPTAHTWTHCEIHP 360

Query: 711  SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770
            S+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG    NY+ RMDT+A +LYYPQKPL T
Sbjct: 361  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGXXSFNYEQRMDTMANILYYPQKPLAT 420

Query: 771  TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKK 830
            TR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+EK+
Sbjct: 421  TRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKR 480

Query: 831  MGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQ 889
            +G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  
Sbjct: 481  IGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEEL 540

Query: 890  GQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
            GQ ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+SRHG
Sbjct: 541  GQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 600

Query: 949  QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
            QKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDAT
Sbjct: 601  QKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDAT 660

Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            PFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L   IFLGPTYYQ
Sbjct: 661  PFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQIFLGPTYYQ 708


>gi|258562146|gb|ACV81795.1| RNA polymerase II second largest subunit [Wallemia sebi]
          Length = 680

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/682 (63%), Positives = 532/682 (78%), Gaps = 29/682 (4%)

Query: 425  YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYAS 483
            Y+QKCV+  K+ NL  A+KA TIT+GLKYSLATGNWG Q      RAGVSQVLNR T+AS
Sbjct: 1    YMQKCVETHKEFNLNQAVKANTITNGLKYSLATGNWGDQKKFMQARAGVSQVLNRYTFAS 60

Query: 484  TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
            TLSHLRR N+PIGR+GK+AKPRQLHN+ WGM+CPAETPEGQACGLVKNLALM  ++ GS+
Sbjct: 61   TLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMANVSTGSS 120

Query: 544  AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + PI +FL+EWG E  EE +P       K+FVNG W+G+HRDP  LVKTLR+LRR  D+ 
Sbjct: 121  SAPIQDFLQEWGMEELEEFNPR--SNQVKVFVNGVWIGVHRDPTNLVKTLRKLRREGDIQ 178

Query: 604  TEVGVVRDIRLKELRIYTDYGRCSRPLFIV--EKQRLLIKKRDIIALQQRESPEDG---- 657
             EV VVRD+R KE++++TD GR  RPLF+V  E Q+L I K  I  ++   + ED     
Sbjct: 179  HEVSVVRDVREKEIKVFTDAGRVCRPLFLVDEETQQLEINKSHIAKIEAHTNGEDEDPDQ 238

Query: 658  --GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR--LHPEEAYAD------------ 701
               W  L++ G +E +D EEEET MI MT  +L  +R    P++   D            
Sbjct: 239  PYNWAKLMSDGVMELLDAEEEETVMICMTPEELEHSRQGFIPQDEEFDPAARIKSASTLD 298

Query: 702  --TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAY 759
              T+THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQ+AMGKQAMG+++TN+Q RMDTL+ 
Sbjct: 299  THTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQAAMGKQAMGVHLTNFQQRMDTLSN 358

Query: 760  VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 819
            +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQS+IDRG FRS+
Sbjct: 359  ILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSI 418

Query: 820  FFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 879
            F+RSY D EKK+GT++ E+F +P R   + M+HG+YDK+++DGL  PGT V+G+D+IIGK
Sbjct: 419  FYRSYMDTEKKVGTMLLEEFEKPTRETCLRMKHGTYDKIENDGLIAPGTAVTGDDIIIGK 478

Query: 880  TTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 937
            T PI  D E  GQ ++ +T+RD S  L+ +E G+VDQVL+TTNADGL+F KVR+RS RIP
Sbjct: 479  TAPIPPDSEELGQRTKLHTKRDVSTPLKSTENGIVDQVLVTTNADGLKFSKVRMRSTRIP 538

Query: 938  QIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 997
            QIGDKF+SRHGQKGT+G+TY  EDMP+T +GITPD+I+NPHAIPSRMTIG L+EC++ KV
Sbjct: 539  QIGDKFASRHGQKGTIGITYRNEDMPFTSDGITPDLIINPHAIPSRMTIGHLVECLLSKV 598

Query: 998  AAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            A   G EGDATPFT+VTV++IS  LH+ GYQ RG E MYNGHTGR+L A +++GPTYYQR
Sbjct: 599  ATLQGSEGDATPFTEVTVESISSILHEKGYQKRGLEVMYNGHTGRKLQAQVYIGPTYYQR 658

Query: 1058 LKHMVDDKIHSRGRGPVQILTR 1079
            LKHMVDDKIH+R RGPVQILTR
Sbjct: 659  LKHMVDDKIHARARGPVQILTR 680


>gi|52699898|gb|AAU87010.1| DNA-dependent RNA polymerase II second largest subunit [Thamnolia
            subuliformis]
          Length = 716

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/716 (61%), Positives = 541/716 (75%), Gaps = 46/716 (6%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            D  G KRLDLAG L+ GLFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ T+T+GLK
Sbjct: 1    DXXGKKRLDLAGXLMAGLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTLTNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM  +TVGS + PI++F+ +   E  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMVQRNMEILEEYEPLRSPNAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG+HRDP  LV T+  LRRR  ++ EV ++RDIR +E +I+TD GR  RPLF
Sbjct: 181  KVFVNGVWVGVHRDPAHLVSTVMSLRRRGLISHEVSLIRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVE-------KQRLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDT 673
            +++       K  L++ K  +  L+  ++ P D           GW  L+ +G +EY+D 
Sbjct: 241  VIDNDAKSPNKGSLVLTKELVNRLEDDKDLPADMDPDEKAAKTMGWDGLIKRGVVEYLDA 300

Query: 674  EEEETTMISMTINDL----------------------VQARLHPEEAYADTYTHCEIHPS 711
            EEEET MI MT  DL                      V+A L+P    A T+THCEIHPS
Sbjct: 301  EEEETVMIVMTPEDLDISRQLQAGYQMPETTDDPNKRVKAPLNPT---AHTWTHCEIHPS 357

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            +ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG   TN+  RMDT+  +LYYPQKPL TT
Sbjct: 358  MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGXXXTNFDERMDTMTNILYYPQKPLATT 417

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            R+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R Y D+EK++
Sbjct: 418  RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRVYTDQEKRV 477

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 890
            G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  G
Sbjct: 478  GMSVVEMFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELG 537

Query: 891  QASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            Q ++ + +RD S  LR +E G+VD+VLLTTN +GLRFVKVR+R+ +IPQIGDKF+SRHGQ
Sbjct: 538  QRTKLHIKRDVSTPLRSTENGLVDKVLLTTNHEGLRFVKVRMRTTKIPQIGDKFASRHGQ 597

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATP
Sbjct: 598  KGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYEGDATP 657

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            FT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVD K
Sbjct: 658  FTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXK 713


>gi|52699837|gb|AAU86980.1| DNA-dependent RNA polymerase II second largest subunit [Morchella
            esculenta]
          Length = 708

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/710 (61%), Positives = 541/710 (76%), Gaps = 36/710 (5%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            D  G  RLDLAGPLL GLFR L++KLT+DV  Y++KCV+ G+D NL  A+K+ TIT+GLK
Sbjct: 1    DXXGXXRLDLAGPLLAGLFRTLWKKLTKDVYKYLEKCVETGRDFNLTLAVKSNTITNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNL+LM YIT+G+  YP+++FL     E  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLSLMSYITIGTPGYPLVDFLSSNDMELLEEYEPQRSPNAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVG HRDP ML K ++ +RR+  VN EV ++RDIR +E +I+TD GR  RPLF
Sbjct: 181  KVFVNGVWVGTHRDPLMLHKVVQDVRRQGVVNHEVSIIRDIRDREFKIFTDAGRVCRPLF 240

Query: 632  IVE-------KQRLLIKKRDIIALQQRES---PEDGGWHDLVAKGFIEYIDTEEEETTMI 681
            +++       + +L+++K  I  L+   +    +  GW  L+  G +EY+D EEEET MI
Sbjct: 241  VIDNDPRSERRGQLVLQKEHIEKLEDDHALPMEDRFGWEGLLFSGTVEYLDAEEEETVMI 300

Query: 682  SMTINDL---------------------VQARLHPEEAYADTYTHCEIHPSLILGVCASI 720
             MT  DL                     V+A ++P  A+  T+THCEIHPS+ILG+CASI
Sbjct: 301  VMTPEDLDMSRQMQLGYEEPKDEFSAKRVKAPINPHTAH--TWTHCEIHPSMILGICASI 358

Query: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR 780
            IPFPDHNQSPRNTYQSAMG QAMG     +  RMDT+A +LYYPQKPL TTR+ME+L FR
Sbjct: 359  IPFPDHNQSPRNTYQSAMGXQAMGXXXXXFSERMDTMANILYYPQKPLATTRSMEYLKFR 418

Query: 781  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG 840
            +LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E+F 
Sbjct: 419  ELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYMDQEKRIGMQVVEEFE 478

Query: 841  RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRR 898
            +P R+NT+ ++HG+YDKLD+DGL  PG RVSGED+IIGKT PI+ D +  GQ  +Y T+R
Sbjct: 479  KPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPITPDVDEMGQRQKYHTKR 538

Query: 899  DHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958
            D S  LR +E G+VDQV+LTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGTVG+TY 
Sbjct: 539  DVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTVGITYR 598

Query: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNI 1018
            QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTV+++
Sbjct: 599  QEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVESV 658

Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            S  L + GYQ RGFE MYNG+TGR+L   +FLGPTYYQR +HMV  KI +
Sbjct: 659  STLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPTYYQRXRHMVXXKIXA 708


>gi|124263396|gb|ABH09761.2| RNA polymerase II second largest subunit [Urocystis colchici]
          Length = 707

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/708 (62%), Positives = 540/708 (76%), Gaps = 34/708 (4%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPL+  LFRMLFRKLTRD+  ++Q+CV+  K+ ++Q A+K+ TIT+GL+YSL
Sbjct: 1    GKKRLDLAGPLMASLFRMLFRKLTRDIYRHLQRCVEEHKEFHIQAAVKSSTITNGLRYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q      +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNL+LM  I+VG+ + PI+EFLEE+G ++  ++      +ATK+F
Sbjct: 121  VCPAETPEGQACGLVKNLSLMSNISVGTPSAPIIEFLEEFGLDSLVDMQ-VTNAKATKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G H DP  LV TLR LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIV 
Sbjct: 180  VNGVWMGTHDDPGQLVDTLRDLRRKDDISHEVSVVRDIREKELRLYTDAGRVLRPLFIVN 239

Query: 635  KQ--RLLIKKRDIIAL-QQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ- 690
                 LLIKK  +  L Q  E  E+  W  LV +G IEY+D EEEET MI M+  DL Q 
Sbjct: 240  PMDMTLLIKKHHVAMLGQTTELGEEFRWTQLVQQGVIEYLDAEEEETVMICMSPTDLEQS 299

Query: 691  ------------------ARLHPEEAYA-DTYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
                              ARL     +A DT+THCEIHP++ILG+CASIIPFP       
Sbjct: 300  REYKARNGQMPAETADPSARLKSPHTFAPDTWTHCEIHPAMILGICASIIPFPXXXXXXX 359

Query: 732  NT-------YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
                     YQSAMGKQ+MG+Y+TNYQ RMDT+A +LYYPQKPL TTR+MEHL FR+LPA
Sbjct: 360  XXXXXXXXXYQSAMGKQSMGVYLTNYQMRMDTMANILYYPQKPLATTRSMEHLRFRELPA 419

Query: 785  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 844
            G NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSL++R+Y  EEKK+G ++ E+F +P R
Sbjct: 420  GQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRAYMAEEKKVGVMIMEEFEKPSR 479

Query: 845  SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 902
             NT+ ++HG+YDK+D DG+ PPGTRVSG+D+IIGKT P+  D E  G  S+ +T++D SI
Sbjct: 480  DNTIRLKHGTYDKIDADGMVPPGTRVSGDDIIIGKTAPLPPDSEELGLRSKTHTKKDVSI 539

Query: 903  SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
            SL+ +E G++DQVLLTTNA+G +FVKVRVRS R+PQ GDKF+SRHGQKGT+G+TY QEDM
Sbjct: 540  SLKSTENGIIDQVLLTTNANGNKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITYRQEDM 599

Query: 963  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1022
            P+T EG+TPDII+NPHAIPSRMTIG L+EC++ KVA   G+EGDATPFT++TV+ +S  L
Sbjct: 600  PFTSEGVTPDIIINPHAIPSRMTIGHLVECLLSKVATLSGQEGDATPFTELTVEAVSSIL 659

Query: 1023 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 1070
               GY  RG E MYNGHTGR+L A  +LGPTYYQRLKHMVDDKIHSR 
Sbjct: 660  RGLGYHSRGLEVMYNGHTGRKLQAQCYLGPTYYQRLKHMVDDKIHSRA 707


>gi|103001284|gb|ABF71500.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            cf. chlorophanum Feuerer 18.2.2003]
          Length = 699

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/702 (62%), Positives = 536/702 (76%), Gaps = 46/702 (6%)

Query: 404  GPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-Q 462
            GPLL  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ TIT+GLKYSLATGNWG Q
Sbjct: 1    GPLLANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTITNGLKYSLATGNWGDQ 60

Query: 463  ANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPE 522
              AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPE
Sbjct: 61   KKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 120

Query: 523  GQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI 582
            GQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+
Sbjct: 121  GQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGV 180

Query: 583  HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ------ 636
            HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++        
Sbjct: 181  HRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNC 240

Query: 637  -RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMT 684
              L++ K         +D+ A+   E  E    GW  LV  G +EY+D EEEET MI MT
Sbjct: 241  GNLVLTKEHINKLEDDKDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMT 300

Query: 685  INDL----------------------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
              DL                      V+A ++P    A T+THCEIHPS+ILG+CASIIP
Sbjct: 301  PEDLEISRQIQAGYAMPETSDDPNKRVKAPMNPT---AHTWTHCEIHPSMILGICASIIP 357

Query: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
            FPDHNQSPRNTYQSAMGK  MG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+L
Sbjct: 358  FPDHNQSPRNTYQSAMGKXXMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFREL 417

Query: 783  PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP 842
            PAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P
Sbjct: 418  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKP 477

Query: 843  DRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDH 900
             RS+T+ ++HG+YDKLD+DG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD 
Sbjct: 478  MRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDV 537

Query: 901  SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 960
            S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QE
Sbjct: 538  STPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQE 597

Query: 961  DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1020
            DMP+T+EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK
Sbjct: 598  DMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSK 657

Query: 1021 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 658  LLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 699


>gi|402591318|gb|EJW85248.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
          Length = 641

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/650 (65%), Positives = 508/650 (78%), Gaps = 14/650 (2%)

Query: 535  MVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLR 594
            M YI+VGS   PILEFLEEW  EN EE++P  I  ATKIFVNG WVGIHRDPE L+ TL+
Sbjct: 1    MAYISVGSLPEPILEFLEEWSMENLEEVAPTAIADATKIFVNGAWVGIHRDPEQLMTTLK 60

Query: 595  RLRRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRES 653
            +LRR +D+  +EV +VRDIR +E+RIYTD GR  RPL IVE Q+L +K++ I  L+    
Sbjct: 61   KLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKRKHIDQLKDNSY 120

Query: 654  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLI 713
                 W +LVA G +E ID  EEET M++M   DL          Y DTYTHCEIHP++I
Sbjct: 121  T----WSELVAGGVVELIDAMEEETVMLAMMPEDLKAG------GYCDTYTHCEIHPAMI 170

Query: 714  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 773
            LGVCASIIPFPDHNQSPRNTYQSAMGKQAMG+Y TN+  RMDTLA+VLYYPQKPLVTTR+
Sbjct: 171  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRS 230

Query: 774  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 833
            ME+L F +LPAGINAIVAI  Y+GYNQEDS+IMNQS IDRG FRS+F+RSYRD+E  +  
Sbjct: 231  MEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFRSVFYRSYRDQEANLDN 290

Query: 834  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQ 891
              +E   +P R    GMRH  YDKLD+DG+  PG RVSG+DVIIGKT   P ++D+    
Sbjct: 291  ANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDTEDDLDAA 350

Query: 892  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
              RYT++D S  LR SETG+VDQV+LT N DG +FVK+RVRSVR+PQIGDKF+SRHGQKG
Sbjct: 351  IKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRHGQKG 410

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
            T+GM Y QEDMP+T EGITPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATPF 
Sbjct: 411  TMGMMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFN 470

Query: 1012 D-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRG 1070
            D V V  IS  L + GY +RG E MYNGHTGR+LT  +FLGPTYYQRLKHMVDDKIHSR 
Sbjct: 471  DTVNVQKISNLLQEYGYHLRGNEIMYNGHTGRKLTVQVFLGPTYYQRLKHMVDDKIHSRA 530

Query: 1071 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCG 1130
            RGPVQ++ RQP EGR+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V++C +CG
Sbjct: 531  RGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVYICNNCG 590

Query: 1131 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
            LI +ANL+ NSFEC+ C+NKT +    IPYACKLLFQELM+M+IAPR++ 
Sbjct: 591  LIVVANLRTNSFECKACRNKTQVSAFRIPYACKLLFQELMSMSIAPRLMV 640


>gi|123979418|gb|ABM81534.1| RNA polymerase II second largest subunit [Buellia fimbriata]
          Length = 704

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/703 (62%), Positives = 538/703 (76%), Gaps = 41/703 (5%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL GLFR LF KL +DV  Y++ C++N K+ NL   +KA TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLAGLFRTLFNKLNKDVEKYLKSCIENNKEFNLAIGVKANTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNL+LM Y++VGS +  I++FL +   E+ EE  P   P ATKIFVN
Sbjct: 122  PAETPEGQACGLVKNLSLMCYVSVGSPSDGIIDFLLQRQMESLEEYDPLTSPNATKIFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVGIHR+P  LV  ++ LRRR  +  EV +VRDIR +E +I TD GR  RPLF+VE  
Sbjct: 182  GVWVGIHRNPAHLVSAVQSLRRRHIIAHEVSLVRDIRDREFKILTDQGRVLRPLFVVEND 241

Query: 637  -------RLLIKKRDIIALQQR-ESPEDG----------GWHDLVAKGFIEYIDTEEEET 678
                    L++ K  I AL +  + P D           GW +L+ +G +EYID EEEET
Sbjct: 242  VKSPNCGNLVLNKEHIDALAKGGDVPLDMDKDERKEMIYGWDNLIEEGIVEYIDAEEEET 301

Query: 679  TMISMTINDLVQARLH------PE-------------EAYADTYTHCEIHPSLILGVCAS 719
             MISM+ +DL  +R +      PE                A T+THCEIHPS+ILGVCAS
Sbjct: 302  VMISMSPSDLQISRQYQAGYALPEADDDPNARVKASTNTKAHTWTHCEIHPSMILGVCAS 361

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+++TNY  RM+T+A++LYYPQKPL TTR+ME L F
Sbjct: 362  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMETMAHILYYPQKPLATTRSMEFLKF 421

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G    E F
Sbjct: 422  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGLTTLETF 481

Query: 840  GRPDRSNTMGMRHGSYDKLDD-DGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-T 896
             +P RSNTM ++HG+Y+KLDD DG+  PG RVSGED++IGKT PI+ D E  GQ ++   
Sbjct: 482  EKPMRSNTMKLKHGTYEKLDDGDGIIIPGARVSGEDIVIGKTAPIAADAEELGQGTKIRE 541

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            +RD S  LR +E+G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+T
Sbjct: 542  KRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 601

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD
Sbjct: 602  YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVD 661

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
            ++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+
Sbjct: 662  SVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 704


>gi|103001965|gb|ABF71529.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            cf. chlorophanum Nash 26]
          Length = 714

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/711 (62%), Positives = 533/711 (74%), Gaps = 40/711 (5%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFRMLF KLT+DV  Y+ KCV++G++ NL   +K+ TIT+GLKYS
Sbjct: 1    FGKKRLDLAGPLLANLFRMLFNKLTKDVXKYLXKCVESGREFNLTLGVKSTTITNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            ++CPAETPEGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+
Sbjct: 121  LVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKV 180

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF++
Sbjct: 181  FVNGVWVGVHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVI 240

Query: 634  EKQ-------RLLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEE 675
            +          L++ K         RD+ A+   E  E    GW  LV  G +EY+D EE
Sbjct: 241  DNDPKSTNCGNLVLTKEHINKLEDDRDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEE 300

Query: 676  EETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGV 716
            EET MI MT  DL     +QA     EA  D              T+THCEIHPS+ILG+
Sbjct: 301  EETVMIVMTPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGI 360

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSP NTYQS MG             RMDT A +LYYPQKPL TTR+ME 
Sbjct: 361  CASIIPFPDHNQSPXNTYQSXMGXXXXXXXXXXXXQRMDTXANILYYPQKPLATTRSMEF 420

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V 
Sbjct: 421  LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVV 480

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 894
            E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PIS D E  GQ ++ 
Sbjct: 481  EQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKL 540

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
            + +RD S  LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G
Sbjct: 541  HVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 600

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VT
Sbjct: 601  ITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVT 660

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            VD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDDK
Sbjct: 661  VDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 711


>gi|113957191|gb|ABI49106.1| RNA polymerase II second largest subunit [Diploschistes
            cinereocaesius]
          Length = 709

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/709 (61%), Positives = 538/709 (75%), Gaps = 40/709 (5%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPL+  LFR LF +LT+DV  Y+QKC++  +D N+   +K+ T+T+GLKYSLAT
Sbjct: 1    KRLDLAGPLMASLFRSLFNRLTKDVLKYLQKCIEGNRDFNIALGVKSTTLTNGLKYSLAT 60

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNW  Q  AA  +AGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WG++C
Sbjct: 61   GNWSEQKKAAQGKAGVSQVLNRYTFASTLSHLRRTNTPLGRDGKIAKPRQLHNTHWGLVC 120

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YITVGS   PI+EF+ +   E  EE  P   P  TK+FVN
Sbjct: 121  PAETPEGQACGLVKNLALMCYITVGSPGEPIIEFMVQRNMEVLEEYEPTRSPNITKVFVN 180

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVG+HRDP  L  T+  LRRR  ++ EV ++RDIR +E +I+TD GR +RPLF+++  
Sbjct: 181  GVWVGVHRDPAHLYNTVLSLRRRNMISHEVSLIRDIRDQEFKIFTDAGRVARPLFVIDND 240

Query: 637  R-------LLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEYIDTEEEET 678
            +       L++ K  +  L+  RE P             GW  L+  G +EY+D EEEET
Sbjct: 241  KRSSRRGELVLSKELVNRLEDDRELPPGLDPDEKKEKYFGWEGLIKSGAVEYLDAEEEET 300

Query: 679  TMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCAS 719
             MI+MT  DL     VQA   P E   D              T+THCEIHPS+ILG+CAS
Sbjct: 301  VMIAMTPEDLDISRQVQAGYAPPEPSTDQNARFKAPINANVHTWTHCEIHPSMILGICAS 360

Query: 720  IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
            IIPFPDHNQSPRNTYQSAMGKQAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L F
Sbjct: 361  IIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEFLKF 420

Query: 780  RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
            R+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  + E F
Sbjct: 421  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVEQEKRVGMSLVEQF 480

Query: 840  GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-YTR 897
             +P RS T+ ++HG+Y+KLDDDGL  PG RVSGEDVIIGKT PI+ D  + GQ ++ +++
Sbjct: 481  EKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDTDELGQRTKLHSK 540

Query: 898  RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
            RD S  LR +E G+VD+VLLTTN +GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY
Sbjct: 541  RDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 600

Query: 958  TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 1017
             QEDMP+T EGITPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTVD+
Sbjct: 601  RQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTVDS 660

Query: 1018 ISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKI 1066
            +S+ L + GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVDDKI
Sbjct: 661  VSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKI 709


>gi|284174418|ref|ZP_06388387.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
 gi|384433685|ref|YP_005643043.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
 gi|167744883|pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|167744894|pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|239782145|pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|239782158|pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|261601839|gb|ACX91442.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
          Length = 1124

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1181 (42%), Positives = 709/1181 (60%), Gaps = 79/1181 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
            +T ++ W VI AYF+ KGLVRQ LDS+++F++N +QEI+DE  +I         PG    
Sbjct: 5    LTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI-----PTEIPG---- 55

Query: 83   FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 142
                  K+  G+I + KP + ESD     + P  ARLRNLTY+APL++ +    ++   +
Sbjct: 56   -----LKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIP--VENNIE 108

Query: 143  GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL 202
             E         +V+IG +PIML+S+   + Q +   L E+GE P D GGYFI+NGSE+V+
Sbjct: 109  AEP-------EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVI 161

Query: 203  IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQY 262
            + QE ++ N V V   +  +   + A++ S + +  R P T+          K G+    
Sbjct: 162  VTQEDLAPNRVLVDTGKTGSNITHTAKIIS-STAGYRVPVTI-------ERLKDGT---- 209

Query: 263  IRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQ 322
               + P +  +IP +I+ RALG + D+DI+  +  D    ++   L PSLE+A  I N  
Sbjct: 210  FHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLD---PEVQNELFPSLEQASSIANVD 266

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
             ALD+IG R A +G  R+ RI+ A++I+ K  LPH+GT      KKAYY  Y I +++  
Sbjct: 267  DALDFIGSRVA-IGQKRENRIEKAQQIIDKYFLPHLGTSAEDRKKKAYYLAYAISKVIEL 325

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
             LGRR  DD+DHY NKRL LAG L   LFR+ F+   +D+   ++K    G+ + L+  +
Sbjct: 326  YLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALV 385

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            +   +T  ++++LATGNW      G R GVSQ+L+R  + S LSHLRR+ S + R     
Sbjct: 386  RPDIVTERIRHALATGNW-----VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNF 440

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            + R LH +QWG MCP ETPEG   GLVKNLALM  I VG     + + L E G    EE+
Sbjct: 441  EARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVEEV 500

Query: 563  SPAVIP---------QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV---VR 610
               V           + +K+ +NG  +G ++D   L   +R  RR+ +++ EV V   V 
Sbjct: 501  IRRVTEGGEDQNEYLKWSKVILNGRLIGYYQDGGELANKIRERRRKGEISDEVNVGHIVT 560

Query: 611  DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG--WHDLVAKGFI 668
            D  + E+ +  D GR  RPL IV     L+   DI      E  E G   + DLV +G I
Sbjct: 561  DF-INEVHVNCDSGRVRRPLIIVSNGNPLVTIEDI------EKLESGAITFDDLVRQGKI 613

Query: 669  EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
            EY+D EEEE   +++  NDL      P+      +TH EI    ILG+ ASIIP+P+HNQ
Sbjct: 614  EYLDAEEEENAYVALEPNDLT-----PD------HTHLEIWSPAILGITASIIPYPEHNQ 662

Query: 729  SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
            SPRNTYQSAM KQA+G+Y  NYQ R DT A++L+YPQ+PLV TRA++ + +   PAG NA
Sbjct: 663  SPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNNA 722

Query: 789  IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
            I+A+  ++GYN EDS+IMN+SS++RG +RS FFR Y  EE K     ++    P+ +   
Sbjct: 723  ILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPE-AGVR 781

Query: 849  GMRHGSYDKL-DDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASRYTRRDHSISLRH 906
            G +   Y +L +D+G+  P   V G DV+IGK +P     E +  +    +RD SI  RH
Sbjct: 782  GYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTRH 841

Query: 907  SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
             E G+VD VL+T  A+G + VKVRVR +RIP IGDKF+SRHGQKG +GM   Q DMP+TV
Sbjct: 842  GEMGIVDLVLITETAEGNKLVKVRVRDLRIPTIGDKFASRHGQKGVIGMLIPQVDMPYTV 901

Query: 967  EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
            +G+ PDII+NPHA+PSRMT+GQ++E I GK AA  G   DATPF    ++ +   + + G
Sbjct: 902  KGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILRYG 961

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
            Y     E +Y+G TG+++ + I+ G  YYQ+L HMV DK+H+R RGPVQILTRQP EGR+
Sbjct: 962  YLPDATEVVYDGRTGQKIKSRIYFGVVYYQKLHHMVADKLHARARGPVQILTRQPTEGRA 1021

Query: 1087 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1146
            R+GGLRFGEMERDC+I  G +  LK+RL D SD   ++VC+ CG I   +  KN + C  
Sbjct: 1022 REGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTMIYVCDQCGYIGWYDKNKNKYVCPI 1081

Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQS 1187
              +K+++  V + YA KLL QELM+M I+PR++ ++    S
Sbjct: 1082 HGDKSNLFPVTVSYAFKLLIQELMSMIISPRLVLEDKVGLS 1122


>gi|325969565|ref|YP_004245757.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
            768-28]
 gi|323708768|gb|ADY02255.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
            768-28]
          Length = 1141

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1159 (42%), Positives = 709/1159 (61%), Gaps = 65/1159 (5%)

Query: 24   TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDF 83
            + +D WA++ A+  E GLVR Q+DSF++F++  +QE+V+E++ IE   +  +        
Sbjct: 33   SSDDRWALVDAFISEGGLVRHQIDSFNDFVEKKLQEVVNENSLIETEVKGLY-------- 84

Query: 84   AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDG 143
                  I   +I + KP + E+D     L+P  ARLRNLTY+APLY+ +   V     + 
Sbjct: 85   ------IKLERIEVGKPRVREADASEHILYPMEARLRNLTYAAPLYLTMVLYV-----ND 133

Query: 144  EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLI 203
            EEV    D  KV+IG +PIM++S +C LY    ++L    E P D GGYFIINGSE+V++
Sbjct: 134  EEV----DRQKVYIGDLPIMIKSKFCNLYGLKRQELISKLEDPDDPGGYFIINGSERVIV 189

Query: 204  AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI 263
            +QE ++ N  + F K        VA+V S+           +   ++    + G     I
Sbjct: 190  SQEDLAPNKPF-FDKGDKASITNVAKVISIGAG--------YKTTVTVERHRDG----II 236

Query: 264  RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQ-Q 322
              T P I T IP  I+ RALG   D+DI+  +     D  +   L PSL+ +  I +   
Sbjct: 237  YVTFPAIATRIPFPIIMRALGLETDEDIVLAVS---DDPDIQNELLPSLQFSVQIASTID 293

Query: 323  VALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLC 382
             ALD+IG + A +G  R+ RI+ AK++L +  LPH+G  +    KKA   G ++  ++  
Sbjct: 294  DALDFIGSKVA-IGQPREVRIERAKQVLDRYFLPHLGATEEARVKKALLVGQMVKGVIEM 352

Query: 383  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAI 442
             LGRR  DD+DH  NKR+ L G LL  LFR +F+++ +D+R  +++    GK  +L   +
Sbjct: 353  YLGRRQPDDKDHIANKRVRLVGDLLAQLFRAVFKQVLQDIRQQLERHYSRGKIPSLVTLV 412

Query: 443  KAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 502
            +A  IT  ++++LATGNW      G R GVSQ+L+R    STLSHLRR+ S + R     
Sbjct: 413  RADIITERIRHALATGNW-----IGGRTGVSQMLDRTNVLSTLSHLRRIVSNLSRTQPHF 467

Query: 503  KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEI 562
            + R LH +QWG +C  ETPEGQ CGLVKNLAL+  ITVG     + + L + G     + 
Sbjct: 468  EARDLHPTQWGRLCAIETPEGQNCGLVKNLALLSTITVGVNENEVEKMLYDLGVVPILKA 527

Query: 563  SPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVR--DIRLKELRIY 620
                + + T++++NG  +GIH +PE LV T+R +RRR  ++ E+ + R  +  L ELR+ 
Sbjct: 528  RKEGV-KGTEVYLNGRLIGIHTEPEKLVGTVREMRRRGQISHEINIARIQNEYLDELRVN 586

Query: 621  TDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTM 680
             D GR  RPL I+E  +  +K   I  L++ E      W DL++ G IEY+D +EEE  +
Sbjct: 587  CDGGRLRRPLLIIEDGKPRLKPEHIERLRKGE----WSWSDLISNGIIEYLDGDEEENAL 642

Query: 681  ISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 740
            ++          ++PEE  +  YTH EI PS+++G  AS+IP+ +HNQSPRN Y++AM K
Sbjct: 643  VA----------INPEEDMS-KYTHMEIIPSVMIGAVASVIPYAEHNQSPRNIYEAAMAK 691

Query: 741  QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 800
            Q++G    NY+FRMD+  ++L YP++PLV TR ME   +   PAG NA+VA+  Y+GYN 
Sbjct: 692  QSLGFPAANYRFRMDSRGHLLIYPERPLVITRGMELNGYLGRPAGQNAVVALLTYTGYNM 751

Query: 801  EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 860
            ED+VI+N+SSI+RG +RS+FFR+Y  E+ +     ++    P           +Y  LD+
Sbjct: 752  EDAVILNRSSIERGMYRSVFFRTYETEQMRYPGGEEDRIEIPSAEVRGYKGPEAYAHLDE 811

Query: 861  DGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS-RYTRRDHSISLRHSETGMVDQVLLTT 919
            DG+  P   VSG +V+IGKT+P        +A     RRD SI++R  E G+VD V++T 
Sbjct: 812  DGIVSPEVFVSGGEVLIGKTSPPRFYGVYTEAVVSSARRDSSITVRRGEKGIVDSVVITE 871

Query: 920  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
              +G + VKV+VR +RIP++GDKF+SRHGQKG +GM    +DMP+T +GITPDIIVNPHA
Sbjct: 872  TNEGYKLVKVKVRELRIPELGDKFASRHGQKGVMGMMIPMQDMPFTEDGITPDIIVNPHA 931

Query: 980  IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
            +PSRMT+GQL+E + GKVAA  G   DATPF  VT + +   L + G++  G E MY+G 
Sbjct: 932  LPSRMTVGQLLESMAGKVAALRGLTIDATPFEGVTEEELRDLLIRSGFRWDGKEVMYSGL 991

Query: 1040 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1099
            TGR+L A IF+G  YYQ+L HMV DKIH+R RGPVQILTRQP EGRSR+GGLR GEMERD
Sbjct: 992  TGRKLEADIFIGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMERD 1051

Query: 1100 CMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 1159
             +IAHGA+  LKERL + SD Y ++VCE CG+IA  +  K    C    +K  IV++ +P
Sbjct: 1052 VLIAHGAAALLKERLVESSDKYVMYVCEDCGMIAWYDANKGKPVCPIHGDKGRIVRIVVP 1111

Query: 1160 YACKLLFQELMAMAIAPRM 1178
            YA KLL  ELM++ I PR+
Sbjct: 1112 YAFKLLLHELMSLGIYPRI 1130


>gi|103001706|gb|ABF71518.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            gobiense]
          Length = 695

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/698 (62%), Positives = 533/698 (76%), Gaps = 46/698 (6%)

Query: 403  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 461
            AGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGNWG 
Sbjct: 1    AGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGNWGD 60

Query: 462  QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
            Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 61   QKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 120

Query: 522  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
            EGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG
Sbjct: 121  EGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVG 180

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----- 636
            +HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++       
Sbjct: 181  VHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTN 240

Query: 637  --RLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDTEEEETTMISM 683
               L++ K  I  L+  ++ P +           GW  LV  G +EY+D EEEET MI M
Sbjct: 241  CGNLVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVM 300

Query: 684  TINDL----------------------VQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
            T  DL                      V+A ++P    A T+THCEIHPS+ILG+CASII
Sbjct: 301  TPEDLEISRQIQAGYAMPETSDDLNKRVKAPMNPT---AHTWTHCEIHPSMILGICASII 357

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            PFPDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+
Sbjct: 358  PFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRE 417

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
            LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +
Sbjct: 418  LPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEK 477

Query: 842  PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRD 899
            P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD
Sbjct: 478  PMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRD 537

Query: 900  HSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 959
             S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY Q
Sbjct: 538  VSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQ 597

Query: 960  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS 1019
            EDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++S
Sbjct: 598  EDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVS 657

Query: 1020 KALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            K L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 658  KLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 695


>gi|146302818|ref|YP_001190134.1| DNA-directed RNA polymerase subunit B [Metallosphaera sedula DSM
            5348]
 gi|145701068|gb|ABP94210.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Metallosphaera sedula DSM 5348]
          Length = 1124

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1188 (42%), Positives = 707/1188 (59%), Gaps = 109/1188 (9%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI--EIRPESQHNPGQQ 80
            ++ +D W ++ AYF+ +GLVRQ LDSF++FI+N +QEI+DE  +I  EI       PG  
Sbjct: 2    LSVDDRWVIVEAYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEIITEI-------PG-- 52

Query: 81   SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
                    KI  G+I + KP + E+D     + P  ARLRNLTY+AP+++ +T   ++  
Sbjct: 53   -------LKIRLGKIRVGKPRVREADKGDKEITPMEARLRNLTYAAPIFLTMTP--VENN 103

Query: 141  HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
             +G       D T+V IG +PIML+S      + S+  L E+GE P D GGYFIINGSE+
Sbjct: 104  IEG-------DPTEVHIGDIPIMLKSIADPTSEFSQDKLVEIGEDPKDPGGYFIINGSER 156

Query: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
            V++ QE ++TN V     +  +   + A++ S + S  R P T+  R+   T        
Sbjct: 157  VIVTQEDLATNRVLTDVGKAGSNVTHTAKIIS-STSGYRVPITI-ERLKDST-------- 206

Query: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQN 320
              I  + P     IP  I+ RALG   D+DI   +  D    Q+   L PSLE+A  I +
Sbjct: 207  --IHVSFPSAPGRIPFAILMRALGVETDEDITLAVSLD---PQIQNELLPSLEQASSISS 261

Query: 321  QQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLL 380
            ++ ALD+IG R A +G  R+ RI+ A++IL K  LPH+GT       KAYY  + + +L+
Sbjct: 262  KEDALDFIGNRVA-IGQKREMRIQKAEQILDKYFLPHIGTNPSDRVAKAYYLAFAVSKLI 320

Query: 381  LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQF 440
               LGRR  DD+DHY NKRL LAG L   LFR+ F+   +D+   ++K    G+ + +  
Sbjct: 321  ELYLGRREPDDKDHYANKRLKLAGDLFASLFRVAFKAFVKDLVFQLEKSKVRGRRLAINA 380

Query: 441  AIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 500
             ++   I+  ++++LATGNW      G R GVSQ+L+R  + S LSHLRR+ S + R   
Sbjct: 381  LVRPDIISERIRHALATGNW-----VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQP 435

Query: 501  LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS------------AAYPIL 548
              + R LH +QWG MCP ETPEG   GLVKN+AL+  I+VG                PI 
Sbjct: 436  NFEARDLHGTQWGRMCPFETPEGPNSGLVKNIALLAQISVGINEKSLERTLYNLGVVPID 495

Query: 549  EFL-----EEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN 603
            + +     EE  +EN++  S        K+ +NG  +G + D   L + +R  RR  +++
Sbjct: 496  DAIKKVKSEEGQSENYQTWS--------KVILNGRLIGYYPDGRELAEKIRESRREGELS 547

Query: 604  TEVGVVRDIR--LKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 661
             EV V  +I     E+ I +D GR  RPL +V+  + L+ K DI  L++ +   D     
Sbjct: 548  DEVNVSYNITETFNEVYINSDSGRVRRPLIVVKHGKPLVTKEDIENLKKGKITFD----T 603

Query: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
            LV +G IE++D EEEE   I+          L P++   D +TH EI    ILG+ ASII
Sbjct: 604  LVKEGKIEFLDAEEEENAYIA----------LEPKDVTKD-HTHLEIWAPAILGITASII 652

Query: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
            P+P+HNQSPRNTYQSAM KQA+G+Y  NYQ R DT A++L+YPQKP+V TRA+E + + +
Sbjct: 653  PYPEHNQSPRNTYQSAMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIGYTE 712

Query: 782  LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
             PAG NAI A+  Y+GYN ED+VIMN+SS+DRG FRS FFR Y  EE K     +++   
Sbjct: 713  RPAGNNAIFALMSYTGYNMEDAVIMNKSSVDRGMFRSTFFRLYSAEEIKYPGGQEDEILL 772

Query: 842  PDRSNTMGMRHGSYDKL-DDDGLAPPGTRVSGEDVIIGKTTP---------ISQDEAQGQ 891
            P+     G +   Y +L + +G+  P   V G DV+IGK +P         +S D+A   
Sbjct: 773  PE-PGVRGYKGKDYYRLLESNGIVSPEVDVKGGDVLIGKVSPPRFLQEFKELSPDQA--- 828

Query: 892  ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 951
                 +RD SI  RH E G VD VL+T  ++G + VKVRVR +RIP+IGDKF++RHGQKG
Sbjct: 829  -----KRDTSIITRHGERGTVDLVLVTETSEGNKLVKVRVRDLRIPEIGDKFATRHGQKG 883

Query: 952  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 1011
             +GM   Q DMP+T  G+ PDII+NPHA+PSRMT+GQ++E I GK  A  G   DATPF 
Sbjct: 884  VIGMLIPQVDMPYTTSGLVPDIILNPHALPSRMTVGQIMEAIAGKFVAATGNPIDATPFY 943

Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
            +  ++ I + L + GY   G E +Y+G TG +L   I  G  YYQ+L HMV DK+H RGR
Sbjct: 944  NTPIEEIQRKLLEHGYLSDGSEVVYDGRTGEKLKGRILFGIVYYQKLHHMVADKMHGRGR 1003

Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
            GPVQILTRQP EGR+R+GGLRFGEMERDC+I +GA+  +K+RL D SD   V+VCE CG 
Sbjct: 1004 GPVQILTRQPTEGRAREGGLRFGEMERDCLIGYGAAMLIKDRLLDNSDRATVYVCEQCGY 1063

Query: 1132 IAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
            +   +  KN + C    +KT +  V I YA KLL QELM+M IAP+++
Sbjct: 1064 VGWYDRTKNKYICPIHGDKTTLYPVVISYAFKLLLQELMSMVIAPKLV 1111


>gi|119644030|gb|ABL85602.1| RNA polymerase II second largest subunit [Flavopunctelia flaventior]
          Length = 708

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/711 (60%), Positives = 536/711 (75%), Gaps = 47/711 (6%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DDRDH+G KRLDLAGPL+  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+
Sbjct: 1    DDRDHFGKKRLDLAGPLMANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GL+YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLRYSLATGNWGDQKKAAQSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WG++CPAETPEGQACGLVKNL+LM YITVG+ + PI++F+ +   E  EE  P   P
Sbjct: 121  NTHWGLVCPAETPEGQACGLVKNLSLMCYITVGTPSEPIIDFMIQRNMEVLEEYEPQRSP 180

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATK+F NG WVG+HRDP  L   + +LRR   ++ E  +VRDIR +E +I+TD GR  R
Sbjct: 181  NATKVFANGVWVGVHRDPAHLTSVMLKLRRTHAISHETSLVRDIRDREFKIFTDAGRVCR 240

Query: 629  PLFIVEKQ-------RLLIKKRDIIALQQRESPEDG------------GWHDLVAKGFIE 669
            PLF+++          L++ K+ I+ L+     +D             GW  LV +G +E
Sbjct: 241  PLFVIDNDVKSERAGELVLTKQHIMKLEDDRDIKDSDLPQEEKDERTWGWKGLVEEGIVE 300

Query: 670  YIDTEEEETTMISMTINDL----------------------VQARLHPEEAYADTYTHCE 707
            Y+D EEEET MI MT  DL                      V+  ++P    A T+TH E
Sbjct: 301  YLDAEEEETAMIVMTPEDLEISKQVRRGEVIIDDNPDPNKRVKTPINPT---AHTWTHSE 357

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAM   +TNY+ RMDT+A +LYYPQKP
Sbjct: 358  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMXXTLTNYEQRMDTMANILYYPQKP 417

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y D+
Sbjct: 418  LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQ 477

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 886
            EK++G  V E F +P RS+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D 
Sbjct: 478  EKRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDA 537

Query: 887  EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
            E  GQ ++ + +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGDKF+S
Sbjct: 538  EELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFAS 597

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EG
Sbjct: 598  RHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEG 657

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            DATPFT+VTVD++S+ L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQ
Sbjct: 658  DATPFTEVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQ 708


>gi|68131866|gb|AAY85211.1| RNA polymerase II second largest subunit [Gunnera chilensis]
          Length = 453

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/453 (94%), Positives = 444/453 (98%)

Query: 108 ETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
           ETATLFPKAARLRNLTYSAPLYVDVTKRVIK+GHD EE+TETQDFTKVFIGKVPIML+SS
Sbjct: 1   ETATLFPKAARLRNLTYSAPLYVDVTKRVIKRGHDCEELTETQDFTKVFIGKVPIMLKSS 60

Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 227
           YCT++QN+EKDLTELGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV
Sbjct: 61  YCTVHQNTEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV 120

Query: 228 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 287
           AEVRSMAESQNRPPS+MFVRMLSR SAKGG+SGQYIRATLPYIRTEIPIIIVFRALGFVA
Sbjct: 121 AEVRSMAESQNRPPSSMFVRMLSRASAKGGASGQYIRATLPYIRTEIPIIIVFRALGFVA 180

Query: 288 DKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAK 347
           DKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVT++KRIKYAK
Sbjct: 181 DKDILEHICYEFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAK 240

Query: 348 EILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
           EILQKEMLPHVG G++CETKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLL
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 467
           GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAG 360

Query: 468 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACG 527
           TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACG
Sbjct: 361 TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACG 420

Query: 528 LVKNLALMVYITVGSAAYPILEFLEEWGTENFE 560
           LVKNLALMVYITVGSAA PILEFLEEW TENFE
Sbjct: 421 LVKNLALMVYITVGSAANPILEFLEEWSTENFE 453


>gi|94410944|gb|ABF18590.1| RNA polymerase II second largest subunit, partial [Kuehneromyces
            rostratus]
          Length = 669

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/670 (65%), Positives = 527/670 (78%), Gaps = 25/670 (3%)

Query: 395  YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
            +G KRLDLAGPLL  LFRMLFRKLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYS
Sbjct: 1    FGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYS 60

Query: 455  LATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
            LATGNWG Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WG
Sbjct: 61   LATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 120

Query: 514  MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKI 573
            M+CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + +  P  TK+
Sbjct: 121  MVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEENAHSTTP-CTKV 179

Query: 574  FVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIV 633
            FVNG W+G+HRD   LVKTL++LRRR D++ EV VVRDIR KELR+YTD GR  RPLFIV
Sbjct: 180  FVNGVWMGVHRDAANLVKTLKKLRRRDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIV 239

Query: 634  EKQRLLIKKRDI--IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
            E Q+L ++K+ I  I     +  E+  W  ++  G IE +D EEEET MISMT  DL  +
Sbjct: 240  ENQQLALQKKHIRWINNGTHDDGEEYKWEQMIKGGVIELLDAEEEETVMISMTPEDLENS 299

Query: 692  RLH-----PEE--------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
            RL      PE+                A T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 300  RLQQSGIAPEQNTGEFDPAARLKAGTPAHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 359

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 360  TYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 419

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
             CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ ++H
Sbjct: 420  LCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRENTLRLKH 479

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 910
            G+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E+G
Sbjct: 480  GTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESG 539

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQVL+TTN++G +FVKVRVRS RIPQ GDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 540  IVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTCEGIV 599

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S  L + GYQ R
Sbjct: 600  PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVESVSTFLRQKGYQSR 659

Query: 1031 GFETMYNGHT 1040
            G E MY+GHT
Sbjct: 660  GLEIMYHGHT 669


>gi|52699808|gb|AAU86966.1| DNA-dependent RNA polymerase II second largest subunit [Diploschistes
            scruposus]
          Length = 713

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/713 (61%), Positives = 538/713 (75%), Gaps = 40/713 (5%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KR DLAGPL+  LFR LF +LT+DV  Y+QKC++  +D N+   +K+ T+T+GLKYSL
Sbjct: 1    GKKRXDLAGPLMASLFRSLFNRLTKDVLKYLQKCIEGNRDFNIALGVKSTTLTNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNW  Q  AA  +AGVSQVLNR T+ASTLSHLRR N+P+GR+GK+AKPRQLHN+ WG+
Sbjct: 61   ATGNWSEQKKAAQGKAGVSQVLNRYTFASTLSHLRRTNTPLGRDGKIAKPRQLHNTHWGL 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM YITVGS   PI+EF+ +   E  EE  P   P  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMCYITVGSPGEPIIEFMVQRNMEVLEEYEPTRSPNITKVF 180

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG WVG+HRDP  L  T+  LRRR  ++ EV ++RDIR +E +I+TD GR +RPLF+++
Sbjct: 181  VNGVWVGVHRDPAHLYNTVLSLRRRNMISHEVSLIRDIRDQEFKIFTDAGRVARPLFVID 240

Query: 635  KQR-------LLIKKRDIIALQQ-RESPED----------GGWHDLVAKGFIEYIDTEEE 676
              +       L++ K  +  L+  RE P D           GW  LV  G +EY+D EEE
Sbjct: 241  NDKRSSRRGELVLSKELVNRLEDDRELPPDLDPDEKKEKYFGWEGLVKSGAVEYLDAEEE 300

Query: 677  ETTMISMTINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVC 717
            ET MI+MT  DL     VQA   P E   D              T+THCEIHPS+ILG+C
Sbjct: 301  ETVMIAMTPEDLDISRQVQAGYAPPEPSTDQNARFKAPVNTNVHTWTHCEIHPSMILGIC 360

Query: 718  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 777
            ASIIPFPDHNQSPRNTYQSAMG QAMG+++TN+  RMDT+A +LYYPQKPL TTR+ME L
Sbjct: 361  ASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTNFDERMDTMANILYYPQKPLATTRSMEFL 420

Query: 778  HFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 837
             FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y ++EK++G  + E
Sbjct: 421  KFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVEQEKRVGMSLVE 480

Query: 838  DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASR-Y 895
             F +P RS T+ ++HG+Y+KLDDDGL  PG RVSGEDVIIGKT PI+ D  + GQ ++ +
Sbjct: 481  QFEKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVIIGKTAPIAPDTDELGQRTKLH 540

Query: 896  TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 955
            ++RD S  LR +E G+VD+VLLTTN +GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+
Sbjct: 541  SKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 600

Query: 956  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTV 1015
            TY QEDMP+T EGITPD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFTDVTV
Sbjct: 601  TYRQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVTV 660

Query: 1016 DNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            D++S+ L + GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMVD KI +
Sbjct: 661  DSVSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRHMVDXKIXA 713


>gi|52699782|gb|AAU86953.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            schleicheri]
          Length = 720

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/722 (61%), Positives = 542/722 (75%), Gaps = 60/722 (8%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLAT
Sbjct: 2    KRLDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YI+VG+ + PI++F+ +   E  EE  P   P ATK+FVN
Sbjct: 122  PAETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQRNMEVLEEYEPQRSPNATKVFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ 636
            G WVG+H DP  LV T++ +RR   ++ EV +VRDIR +E +I+TD GR  RPLF+++  
Sbjct: 182  GVWVGVHSDPVHLVNTVQAVRRGHMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDND 241

Query: 637  -------RLLIKKRDIIALQQRE--SPE-----------------DG---GWHDLVAKGF 667
                    L++ K  I  L+  +  S E                 DG   GW+ L+ +G 
Sbjct: 242  PKSPRCGSLVLTKEHINKLEDYKDLSAEMQEKIREKEEVEKEVKEDGTPYGWNGLIKRGV 301

Query: 668  IEYIDTEEEETTMISMTINDL-------------------------VQARLHPEEAYADT 702
            +EY+D EEEET MI MT  DL                         V+A ++P    A T
Sbjct: 302  VEYVDAEEEETVMIVMTPEDLEISRQLQAGYVLPEPSDTSEALMKRVKAPMNPT---AHT 358

Query: 703  YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 762
            +THCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMG QAMG+++T Y  RMDT+A +LY
Sbjct: 359  WTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGXQAMGVFLTXYXQRMDTMANILY 418

Query: 763  YPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR 822
            YPQKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R
Sbjct: 419  YPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYR 478

Query: 823  SYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
            SY D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT P
Sbjct: 479  SYTDQEKRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAP 538

Query: 883  ISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIG 940
            I+ D E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIG
Sbjct: 539  IAPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIG 598

Query: 941  DKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAH 1000
            DKF+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++ 
Sbjct: 599  DKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSL 658

Query: 1001 MGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKH 1060
             G EGDATPFT++TVD++SK L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+H
Sbjct: 659  RGFEGDATPFTEITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 718

Query: 1061 MV 1062
            MV
Sbjct: 719  MV 720


>gi|110734400|gb|ABG88855.1| RNA polymerase II second largest subunit [Mrakia frigida]
          Length = 705

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/707 (62%), Positives = 530/707 (74%), Gaps = 42/707 (5%)

Query: 390  DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITS 449
            DD DH+G KRLDLAGPLL GLFRMLF+KLT+DV  Y+QKCV+  K+  L+ A++  TIT+
Sbjct: 1    DDSDHFGKKRLDLAGPLLAGLFRMLFKKLTKDVFRYLQKCVETRKEFKLESAVRQATITN 60

Query: 450  GLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLH 508
            GLKYSLATGNWG Q  A   RAGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLH
Sbjct: 61   GLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLH 120

Query: 509  NSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIP 568
            N+ WGM+CPAETPEGQACGLVKNLALM YI+VGS + PILEFL+EWG E  EE + A  P
Sbjct: 121  NTHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPILEFLDEWGLEALEEYAGA--P 178

Query: 569  QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
             ATK+FVNG WVG+HRD   L + L RLRR  D+ +EV VVRDIR +ELR+YTD GR  R
Sbjct: 179  SATKVFVNGVWVGVHRDANQLTEHLIRLRRCSDIKSEVSVVRDIRERELRLYTDAGRVCR 238

Query: 629  PLFIVEK--QRLLIKKRDIIALQQR-------ESPEDGGWHDLVAKGFIEYIDTEEEETT 679
            PLF+V +  Q+L +KK D+  L          ES +   W  L+ +G IE +D EEEET 
Sbjct: 239  PLFVVNQSDQQLALKKEDVGKLTNSKDENLNDESEDHYTWTHLLEEGKIELLDAEEEETV 298

Query: 680  MISMTINDLVQARLHPEEA----------------------------YADTYTHCEIHPS 711
            MI+MT  DL  AR    +A                            ++ T+THCEIHPS
Sbjct: 299  MIAMTPEDLAAAREAESQADMSVREQQRVQMQTGQDYDVAGRAKSTSFSHTFTHCEIHPS 358

Query: 712  LILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTT 771
            +ILG+CASIIPFPDHNQ           KQAMGIY+TNYQ RMDT+A +LYYPQKPL TT
Sbjct: 359  MILGICASIIPFPDHNQXXXXXXXXXXXKQAMGIYLTNYQIRMDTMANILYYPQKPLATT 418

Query: 772  RAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM 831
            R+ME+L FR+LPAG NAIVAI CYSGYNQEDSVIMNQSSIDRG FRS+++RSY+D EKK 
Sbjct: 419  RSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYQDVEKKN 478

Query: 832  GTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQG 890
            G +  E+F +P R +T+ ++ G+YDKLD DGL  PG  V+GED+IIGKT PI +D E  G
Sbjct: 479  GMVSLEEFEKPTRDSTLRLKQGTYDKLDADGLVSPGVGVNGEDIIIGKTAPIPKDSEELG 538

Query: 891  Q-ASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 949
            Q  + +T+RD S  L+ +E G+VDQVL+TTNADGL+FVK+RVRS R+PQIGDKF+SRHGQ
Sbjct: 539  QRQATHTKRDVSTPLKSTEQGIVDQVLVTTNADGLKFVKIRVRSTRVPQIGDKFASRHGQ 598

Query: 950  KGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 1009
            KGTVG+TY QEDMP+T EGITPDII+NPHAIPSRMTIG L+EC++ K+A  +G EGDATP
Sbjct: 599  KGTVGITYRQEDMPFTSEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLLGTEGDATP 658

Query: 1010 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQ 1056
            FTD+TV+ +S  L   GYQ RG E MY+GHTGR+L A ++LGPTYYQ
Sbjct: 659  FTDLTVEAVSARLKDKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQ 705


>gi|52699788|gb|AAU86956.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
            clauzadeana]
          Length = 723

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/724 (61%), Positives = 542/724 (74%), Gaps = 60/724 (8%)

Query: 400  LDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGN 459
            LDLAGPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGN
Sbjct: 1    LDLAGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGN 60

Query: 460  WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 518
            WG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPA
Sbjct: 61   WGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 120

Query: 519  ETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGC 578
            ETPEGQACGLVKNLALM YI+VG+ + PI++F+ +   E  EE  P   P ATK+FVNG 
Sbjct: 121  ETPEGQACGLVKNLALMCYISVGTPSEPIIDFMVQRNMEVLEEYEPQRSPNATKVFVNGV 180

Query: 579  WVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-- 636
            WVG+H DP  LV T++ +RR   ++ EV +VRDIR +E +I+TD GR  RPLF+++    
Sbjct: 181  WVGVHSDPVHLVNTVQAVRRGHMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPK 240

Query: 637  -----RLLIKKRDIIALQQRE--SPE-----------------DG---GWHDLVAKGFIE 669
                  L++ K  I  L+  +  S E                 DG   GW+ L+ +G +E
Sbjct: 241  SPRCGNLVLTKEHINKLEDYKDLSAEMQEKIREKEEVEKEVKEDGTPYGWNGLIKRGVVE 300

Query: 670  YIDTEEEETTMISMTINDL-------------------------VQARLHPEEAYADTYT 704
            Y+D EEEET MI MT  DL                         V+A ++P    A T+T
Sbjct: 301  YVDAEEEETVMIVMTPEDLEISRQLQAGYVLPEPSDTSEALMKRVKAPMNPT---AHTWT 357

Query: 705  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYP 764
            HCEIHPS+ILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG     Y+ RMDT+A +LYYP
Sbjct: 358  HCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGXXXXXYEQRMDTMANILYYP 417

Query: 765  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 824
            QKPL TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY
Sbjct: 418  QKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSY 477

Query: 825  RDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIS 884
             D+EK++G  V E F +P RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+
Sbjct: 478  TDQEKRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIA 537

Query: 885  QD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 942
             D E  GQ ++ + +RD S  LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDK
Sbjct: 538  PDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDK 597

Query: 943  FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1002
            F+SRHGQKGT+G+TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G
Sbjct: 598  FASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRG 657

Query: 1003 KEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             EGDATPFT++TVD++SK L + GYQ RGFE M+NGHTGR+L A +FLGPTYYQRL+HMV
Sbjct: 658  FEGDATPFTEITVDSVSKLLREHGYQSRGFEVMHNGHTGRKLVAQVFLGPTYYQRLRHMV 717

Query: 1063 DDKI 1066
            DDKI
Sbjct: 718  DDKI 721


>gi|300394748|gb|ADK11912.1| DNA-directed RNA polymerase II subunit two, partial [Ramariopsis
            kunzei]
          Length = 678

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/679 (64%), Positives = 533/679 (78%), Gaps = 26/679 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLF+KLT+DV  Y+QKCV+  K+ NL  A+K +TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFKKLTKDVYRYLQKCVETRKEFNLALAVKHQTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGN G Q  +  ++AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+  G 
Sbjct: 61   ATGNRGDQKKSTASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHRGT 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNLALM  I+VGS + P++EFLEEWG E+ EE + + IP  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSPIP-CTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LVKT+++LRR+ D++ EV VVRDIR KELR+YTD GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIALQQ--RESPEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
             Q+L ++K+ I  L Q  R+  ED   W  LV  G +E +D EEEET MISMT  DL  +
Sbjct: 240  NQQLALQKKHIRWLVQGHRDDAEDDFKWEHLVKGGIVELLDAEEEETVMISMTPEDLENS 299

Query: 692  RL-------HPEEAYAD------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
            RL       H  +   D            T+THCEIHPS+ILG+CASIIPFPDHNQSPRN
Sbjct: 300  RLQSSGVDPHANDGEFDPAARLKAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRN 359

Query: 733  TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
            TYQSAMGKQAMGIY+TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI
Sbjct: 360  TYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 419

Query: 793  ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
             CYSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R NT+ M+H
Sbjct: 420  LCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLRMKH 479

Query: 853  GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETG 910
            G+YDKL+DDGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G
Sbjct: 480  GTYDKLEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENG 539

Query: 911  MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
            +VDQVL+TTN++G +FVKVRVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGI 
Sbjct: 540  IVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIV 599

Query: 971  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
            PDII+NPHAIPSRMTIG L+EC++ KVA  +G EGDATPFT++TV+++S  L + GY  R
Sbjct: 600  PDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTELTVESVSTFLKQKGYLSR 659

Query: 1031 GFETMYNGHTGRRLTAMIF 1049
            G E MY+GHTGR+L A+++
Sbjct: 660  GLEVMYHGHTGRKLQALVY 678


>gi|103001775|gb|ABF71521.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            chlorophanum]
          Length = 697

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/700 (62%), Positives = 534/700 (76%), Gaps = 46/700 (6%)

Query: 406  LLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QAN 464
            LL  LFRMLF KLT+DV  Y+QKCV++ ++ NL   +K+ TIT+GLKYSLATGNWG Q  
Sbjct: 1    LLANLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKSTTITNGLKYSLATGNWGDQKK 60

Query: 465  AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 524
            AA ++AGVSQVLNR T+AS LSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQ
Sbjct: 61   AASSKAGVSQVLNRYTFASILSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 120

Query: 525  ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHR 584
            ACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+HR
Sbjct: 121  ACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGVHR 180

Query: 585  DPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------R 637
            DP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++          
Sbjct: 181  DPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNCGN 240

Query: 638  LLIKK---------RDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTIN 686
            L++ K         +D+ A+   E  E    GW  LV  G +EY+D EEEET MI MT  
Sbjct: 241  LVLTKEHINKLEDDKDLPAIMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMTPE 300

Query: 687  DL----------------------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFP 724
            DL                      V+A ++P    A T+THCEIHPS+ILG+CASIIPFP
Sbjct: 301  DLEISRQIQAGYAMPETSDDPNKRVKAPMNPT---AHTWTHCEIHPSMILGICASIIPFP 357

Query: 725  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
            DHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 358  DHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPA 417

Query: 785  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 844
            G NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P R
Sbjct: 418  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMR 477

Query: 845  SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 902
            S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S 
Sbjct: 478  SDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVST 537

Query: 903  SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
             LR +E G+VDQVLLTTNA+GL+FVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 538  PLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDM 597

Query: 963  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1022
            P+T+EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L
Sbjct: 598  PFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLL 657

Query: 1023 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
             + GYQ RGFE MYNGHTGR+L A +F GPTYYQRL+HMV
Sbjct: 658  REHGYQSRGFEVMYNGHTGRKLVAQVFXGPTYYQRLRHMV 697


>gi|15920466|ref|NP_376135.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
 gi|15621249|dbj|BAB65244.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
          Length = 1126

 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1173 (42%), Positives = 712/1173 (60%), Gaps = 78/1173 (6%)

Query: 23   ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI--EIRPESQHNPGQQ 80
            +T  + W ++ ++F+ +GLVRQ LDSF++F++N +Q+I+DE  +I  EI       PG  
Sbjct: 3    LTVNERWEIVKSFFKLRGLVRQHLDSFNDFLRNKLQQIIDEQGEIITEI-------PG-- 53

Query: 81   SDFAETIYKISFGQIYLSKPMMTESD-GETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
                    KI  G+I   +P + E+D G    L P  ARLRNLTY+ PLY+ +    I+ 
Sbjct: 54   -------LKIKLGKIRYDRPGIRETDKGPPKELTPLEARLRNLTYAVPLYLTMIP--IEN 104

Query: 140  GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
              +GE +       +V+IG +PIML+S        +  +L ++GE P D GGYFI+NG+E
Sbjct: 105  NIEGEPI-------EVYIGDLPIMLKSIADPTSNMTYDELIKIGEDPKDPGGYFIVNGTE 157

Query: 200  KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSS 259
            KV++AQE ++TN V V   +  +   +VA++ S A            R+         SS
Sbjct: 158  KVIVAQEDLATNRVLVDYGKSGSNITHVAKITSAAAG---------YRVQVVIERLKDSS 208

Query: 260  GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ 319
             Q   AT+P    +IP +I+ RALGF  DKDI+  +  D    ++   L PSLE+A  I 
Sbjct: 209  IQVSFATVP---GKIPFVIMMRALGFTTDKDIVYAVSLD---PEIQNELLPSLEQASSIT 262

Query: 320  NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
              + ALD+IG R A +G  R+ RI+ A++I+ K  LPH+GT      KK YY    +++L
Sbjct: 263  TVEDALDFIGNRIA-IGQKRENRIQRAEQIIDKYFLPHIGTSPEDRKKKGYYLAAAVNKL 321

Query: 380  LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
            L   LGRR  DD+DHY NKR+ LAG L   LFR+ F+   +D+   ++K    G+ ++L 
Sbjct: 322  LELYLGRRQPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKAKVRGRRLSLT 381

Query: 440  FAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 499
              ++A  IT  ++++LATGNW      G R GVSQ+L+R  + S LSHLRR+ S + R  
Sbjct: 382  ALVRADIITERVRHALATGNW-----VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQ 436

Query: 500  KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 559
               + R LH +QWG MCP ETPEG   GLVKNLAL+  ++VG     I + + E G  + 
Sbjct: 437  PNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINESSIEKVIYEQGVISQ 496

Query: 560  EEISPAVIPQA--------TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRD 611
            EE+   +  +         +K+++NG  +G + D + L + +R LRR   ++ EV V   
Sbjct: 497  EELIDRLSAEEDINKYLNWSKVYLNGRLLGYYPDGKELAEKIRELRRSGKISDEVNVAHI 556

Query: 612  IR--LKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIE 669
            +   + E+ I  D GR  RPL IV+  + L+ + DI  L++ E   D    DLV +G IE
Sbjct: 557  VTEYINEVHINCDGGRVRRPLIIVKDGKPLVSEDDIEKLRKGEITFD----DLVKQGKIE 612

Query: 670  YIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 729
            ++D EEEE   I++   DL +            +TH EI P  ILG+ ASIIP+P+HNQS
Sbjct: 613  FLDAEEEENAYIALNPQDLTK-----------DHTHLEIWPPAILGITASIIPYPEHNQS 661

Query: 730  PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
            PRNTYQSAM KQA+G+Y  NYQ R DT A++L+YPQKPLV T+ ++ + +   PAG NAI
Sbjct: 662  PRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQKPLVGTKILDIIGYNDRPAGNNAI 721

Query: 790  VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
            +A+  Y+GYN ED++IMN+SS++RG +RS FFR Y  EE K     ++   +P+   T G
Sbjct: 722  LAVMSYTGYNMEDAIIMNKSSVERGMYRSTFFRLYSTEELKYPGGQEDKIMKPE-PGTKG 780

Query: 850  MRHGSYDK-LDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASRYTRRDHSISLRHS 907
             +   Y + L+D+G+  P   V G DV+IGK +P     E +  +   ++RD SI  RH 
Sbjct: 781  YKGNEYYRLLEDNGIVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQSKRDTSIVTRHG 840

Query: 908  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
            E G+VD VL+T +++G + VKVRVR +RIP+IGDKF++RHGQKG +GM   Q DMP+TV+
Sbjct: 841  EMGIVDLVLVTESSEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVIGMLIDQADMPYTVK 900

Query: 968  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-TVDNISKALHKCG 1026
            G+ PDII+NPHA+PSRMTIGQ++E + GK  A  GK  DATPF +   ++ I K + + G
Sbjct: 901  GVVPDIILNPHALPSRMTIGQIMEALAGKYVALTGKPVDATPFIESPPLEEIRKGIRESG 960

Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
                G E +Y+G TG++L   I  G  YYQ+L HMV DK+H+R RGPVQILTRQP EGR+
Sbjct: 961  LLPDGTEVVYDGRTGQKLKGRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTEGRA 1020

Query: 1087 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1146
            R+GGLRFGEMERDC+I  G +  +K+RL D SD   ++VC+ CG I   +  +N + C  
Sbjct: 1021 REGGLRFGEMERDCLIGFGTAMLIKDRLLDNSDKATIYVCDKCGYIGWYDRARNKYVCPI 1080

Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
                 ++  V + YA KLL QELM+M I+PR++
Sbjct: 1081 HGENANLYPVTVSYAFKLLLQELMSMVISPRLV 1113


>gi|52699835|gb|AAU86979.1| DNA-dependent RNA polymerase II second largest subunit [Maronea
            chilensis]
          Length = 718

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/721 (59%), Positives = 543/721 (75%), Gaps = 51/721 (7%)

Query: 394  HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKY 453
            H G KRLD AGPLL  LFR +F KL  D+  Y+ +C+D+G++ NLQ A+K+ TITSGL+Y
Sbjct: 1    HXGKKRLDXAGPLLANLFRQVFTKLIGDMNKYLSRCIDSGREFNLQLAVKSNTITSGLRY 60

Query: 454  SLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 512
            SL+TGNW  Q NAA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ W
Sbjct: 61   SLSTGNWSDQKNAATAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHW 120

Query: 513  GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 572
            G++CPAETPEGQACGLVKNLALM Y++VG+ + PIL+FL +   E  EE  P   P ATK
Sbjct: 121  GLVCPAETPEGQACGLVKNLALMCYVSVGTPSDPILDFLVQRNMEVLEEYEPQRSPNATK 180

Query: 573  IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
            +FVNG WVG+HR+P  LV T+++LRR   ++ E+ +V DIR +E +I+TD GR  RPLF+
Sbjct: 181  VFVNGVWVGVHRNPIHLVNTVQKLRRTSVLSYEISLVHDIRDREFKIFTDAGRVCRPLFV 240

Query: 633  VEKQ-------RLLIKK---------------RDIIALQQRESPEDGGWHDLVAKGFIEY 670
            VE          L++ K               +D +A    +  E  GW  LV +G +EY
Sbjct: 241  VETDPKSANNGNLVLTKEHVNKLEDHKETMMDKDRMARMSEKDKELLGWSGLVKQGMVEY 300

Query: 671  IDTEEEETTMISMTINDL-----------------------VQARLHPEEAYADTYTHCE 707
            +D EEEET MI MT  DL                       V+A ++P    A T+THCE
Sbjct: 301  VDAEEEETVMIVMTPEDLEISRQIQAGYALPEPSVDEPNRRVKAPINPT---AHTWTHCE 357

Query: 708  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 767
            IHPS+ILG+CASIIPFPDHNQSPRNTY SAMGKQAMG+Y+TN+  RMDT+A +LYYPQKP
Sbjct: 358  IHPSMILGICASIIPFPDHNQSPRNTYXSAMGKQAMGVYLTNFDQRMDTMANILYYPQKP 417

Query: 768  LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 827
            L TTR+ME L FR+LPAG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+R+Y+D+
Sbjct: 418  LATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDQ 477

Query: 828  EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD- 886
            EK++G  V E F +P RS+T+ ++ G+YDK+D DG+  PG+RVSGED+IIGKT P++ D 
Sbjct: 478  EKRIGMNVVEQFEKPMRSDTLKLKMGTYDKIDADGIVAPGSRVSGEDIIIGKTAPMAADA 537

Query: 887  EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
            E  GQ ++ + +RD S  LR +E+G+VD+VL TTN++GL+FVKVR+R+ ++PQIGDKF+S
Sbjct: 538  EELGQRTKLHIKRDVSTPLRSTESGIVDRVLYTTNSEGLKFVKVRMRTTKVPQIGDKFAS 597

Query: 946  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
            RHGQKGT+G+TY QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC + KV++  G EG
Sbjct: 598  RHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEG 657

Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1065
            DATPFTDVTVD++S+ L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQRL+HMVDD 
Sbjct: 658  DATPFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDX 717

Query: 1066 I 1066
            I
Sbjct: 718  I 718


>gi|357216661|gb|AET71064.1| RNA polymerase II second largest subunit, partial [Datronia
            scutellata]
          Length = 674

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/674 (65%), Positives = 536/674 (79%), Gaps = 24/674 (3%)

Query: 396  GNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSL 455
            G KRLDLAGPLL  LFRMLFRKLT+DV  ++QKCV+ GK+ NL  A+K  TIT+GLKYSL
Sbjct: 1    GKKRLDLAGPLLANLFRMLFRKLTKDVYRHLQKCVEMGKEFNLSLAVKHNTITNGLKYSL 60

Query: 456  ATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 514
            ATGNWG Q  +   +AGVSQVLNR TYASTLSHLRR N+P+GREGK+AKPRQLHN+ WGM
Sbjct: 61   ATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGM 120

Query: 515  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
            +CPAETPEGQACGLVKNL+LM  I+VG+ + P++EFLEEWG E+ EE + A  P  TK+F
Sbjct: 121  VCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENAHASTP-CTKVF 179

Query: 575  VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
            VNG W+G+HRDP  LV+TLRRLRR+ D+N EV VVRDIR +ELR+YTD GR  RPLFIVE
Sbjct: 180  VNGVWMGVHRDPAGLVRTLRRLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVE 239

Query: 635  KQRLLIKKRDIIAL-QQRESPE-DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
             Q+LL++K+ I +L + +E P  +  W +++ +G IE +D EEEET MI MT  DL  +R
Sbjct: 240  DQQLLVQKKHIESLVRSKEDPSFEYNWDNMIKEGVIELLDAEEEETVMICMTPEDLENSR 299

Query: 693  LH-----PEE-------------AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
            L      PEE              YA T+THCEIHPS+ILGVCASIIPFPDHNQSPRNTY
Sbjct: 300  LQAAGVDPEEDENVDPSARLKAPTYAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 359

Query: 735  QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
            QSAMGKQAMGI++TN+  RMDT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI C
Sbjct: 360  QSAMGKQAMGIFLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILC 419

Query: 795  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGS 854
            YSGYNQEDSVIMNQSSIDRG FRS+++RSY D EKK G    E+F +P R  T+ M+HG+
Sbjct: 420  YSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVTQLEEFEKPTRDTTLRMKHGT 479

Query: 855  YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMV 912
            YDKL++DGL  PGT V+GED+IIGKT PI  D E  GQ +R +TRRD S  L+ +E G+V
Sbjct: 480  YDKLENDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEQGIV 539

Query: 913  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 972
            DQVL+TTNA+G +FVK+RVRS RIPQIGDKF+SRHGQKGT+G+TY QEDMP+T EGITPD
Sbjct: 540  DQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPD 599

Query: 973  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGF 1032
            II+NPHAIPSRMTIG L+EC++ K+A  +G EGDATPFT++TV+ +S  L + GYQ RG 
Sbjct: 600  IIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPFTNLTVETVSTFLRQKGYQSRGL 659

Query: 1033 ETMYNGHTGRRLTA 1046
            E MY+GHTGR+L A
Sbjct: 660  EVMYHGHTGRKLQA 673


>gi|123979408|gb|ABM81529.1| RNA polymerase II second largest subunit [Masonhalea richardsonii]
          Length = 704

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/703 (62%), Positives = 540/703 (76%), Gaps = 41/703 (5%)

Query: 398  KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLAT 457
            KRLDLAGPLL  LFR  F KLT DV  Y+QKCV+N K+ N+  A+K+  +T+GL+YSLAT
Sbjct: 2    KRLDLAGPLLASLFRGTFNKLTNDVYKYLQKCVENNKEFNMTLAVKSTHLTNGLRYSLAT 61

Query: 458  GNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMC 516
            GNWG Q  AA  +AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++C
Sbjct: 62   GNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 121

Query: 517  PAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVN 576
            PAETPEGQACGLVKNLALM YITVG+ + PI++F+ +   E  EE  P   P ATKIFVN
Sbjct: 122  PAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLNSPNATKIFVN 181

Query: 577  GCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE-- 634
            G WVG+HRDP  LV T++ LRRR  ++ EV +VRDIR +E +++TD GR  RPLF+++  
Sbjct: 182  GVWVGVHRDPAHLVGTVQNLRRRGLISHEVSLVRDIRDREFKVFTDAGRVCRPLFVIDND 241

Query: 635  -----KQRLLIKKRDIIALQ-QRES-----PE-----DGGWHDLVAKGFIEYIDTEEEET 678
                 K  L++ K  +  L+  RE+     P+     D GW  LV +G +EY+D EEEET
Sbjct: 242  PRSSNKGNLVLTKEHVQKLELDRENWTTTEPDVREKTDMGWQGLVKEGVVEYVDAEEEET 301

Query: 679  TMISMTINDL-----VQARLHPE---------------EAYADTYTHCEIHPSLILGVCA 718
             MI MT  DL     +QA L P                   A T+THCEIHPS+ILG+CA
Sbjct: 302  IMIVMTPEDLDISRQLQAGLEPPGPNPNELNRRVKAPMNPTAHTWTHCEIHPSMILGICA 361

Query: 719  SIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLH 778
            SIIPFPDHNQSPRNTYQSAMGKQAMG+++TNYQ RMDT+A +LYYPQKPL TTR+ME L 
Sbjct: 362  SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQQRMDTMANILYYPQKPLATTRSMEFLK 421

Query: 779  FRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED 838
            FR+LPAG NAIVAIACYSG+NQEDSVI+NQSSIDRG FRSLF+R+Y D+EK++G  V E 
Sbjct: 422  FRELPAGQNAIVAIACYSGHNQEDSVIVNQSSIDRGLFRSLFYRAYTDQEKRVGMSVVEQ 481

Query: 839  FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YT 896
            F +P +S+T+ ++HG+YDKLDDDGL  PG RVSGED+IIGKT PI+ D E  GQ ++ + 
Sbjct: 482  FEKPMQSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHV 541

Query: 897  RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 956
            +RD S  LR +E G+VDQVLL+TNA+GLRFVKVR+R+ +IPQIGD+F+SRHGQKGT+G+T
Sbjct: 542  KRDVSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDRFASRHGQKGTIGIT 601

Query: 957  YTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 1016
            Y QEDMP+T EG+ PD+I+NPHAIPSRMTI  LIEC++ KV++  G EGDATPFT+VTVD
Sbjct: 602  YRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFEGDATPFTEVTVD 661

Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
            ++S+ L + GYQ RGFE MYNGHTGR+L   +FLGPTYYQRL+
Sbjct: 662  SVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQRLR 704


>gi|103001423|gb|ABF71507.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            gobiense]
          Length = 693

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/696 (62%), Positives = 531/696 (76%), Gaps = 46/696 (6%)

Query: 405  PLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QA 463
            PLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGNWG Q 
Sbjct: 1    PLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQK 60

Query: 464  NAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 523
             AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEG
Sbjct: 61   KAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 120

Query: 524  QACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIH 583
            QACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG+H
Sbjct: 121  QACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVGVH 180

Query: 584  RDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ------- 636
            RDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++         
Sbjct: 181  RDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTNCG 240

Query: 637  RLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDTEEEETTMISMTI 685
             L++ K  I  L+  ++ P +           GW  LV  G +EY+D EEEET MI MT 
Sbjct: 241  NLVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVMTP 300

Query: 686  NDL----------------------VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPF 723
             DL                      V+A ++P    A T+THCEIHPS+ILG+CASIIPF
Sbjct: 301  EDLEISRQIQAGYAMPETSDDLNKRVKAPMNPT---AHTWTHCEIHPSMILGICASIIPF 357

Query: 724  PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 783
            PDHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LP
Sbjct: 358  PDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELP 417

Query: 784  AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 843
            AG NAIVAIACYSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EK++G  V E F +P 
Sbjct: 418  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSVVEQFEKPM 477

Query: 844  RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHS 901
            RS+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S
Sbjct: 478  RSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVS 537

Query: 902  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
              LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QED
Sbjct: 538  TPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQED 597

Query: 962  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
            MP+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK 
Sbjct: 598  MPFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKL 657

Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
            L + GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 658  LREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 693


>gi|52699829|gb|AAU86976.1| DNA-dependent RNA polymerase II second largest subunit [Lempholemma
            polyanthes]
          Length = 714

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/714 (62%), Positives = 537/714 (75%), Gaps = 38/714 (5%)

Query: 393  DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLK 452
            D +G  RLDLAGPLL GLFRMLF KLTRDV  Y+QKCV+  ++ NL   IK  T+T+GLK
Sbjct: 1    DXFGKXRLDLAGPLLAGLFRMLFTKLTRDVYKYLQKCVELKREFNLNLGIKQATLTNGLK 60

Query: 453  YSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQ 511
            YSLATGNWG Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ 
Sbjct: 61   YSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 120

Query: 512  WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQAT 571
            WG++CPAETPEGQACGLVKNLALM YITVGS + PI+EF+ +   +  EE  P   P AT
Sbjct: 121  WGLVCPAETPEGQACGLVKNLALMCYITVGSPSPPIIEFMIQRNMDMLEEFDPRNSPTAT 180

Query: 572  KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
            K+FVNG WVGIH +P  L   + +LRR   V+ E+ VVRDIR +E +I+TD GR  RPLF
Sbjct: 181  KVFVNGVWVGIHHNPTHLAIDVLQLRRHNFVSPEISVVRDIREREFKIFTDAGRVCRPLF 240

Query: 632  IVEKQ-------RLLIKKRDIIALQQ-RESP------EDG--GWHDLVAKGFIEYIDTEE 675
            ++E +       RL +KK  +I L+  ++ P      ED   GW  LV  G +EY+D EE
Sbjct: 241  VIETRKGQPDTGRLTLKKHHLIRLENDKDVPFHEKDREDKIYGWQGLVHDGIVEYVDAEE 300

Query: 676  EETTMISMTINDLVQARL-------------------HPEEAYADTYTHCEIHPSLILGV 716
            EET MI MT  DL  +R                     P      T+THCEIHPS+ILG+
Sbjct: 301  EETIMIVMTPEDLEISRQVRAGFPWKDDNMDPNKRIKAPPNPSVHTWTHCEIHPSMILGI 360

Query: 717  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
            CASIIPFPDHNQSPRNTYQSAMGKQAMGI++TNY  RMDT++ +LYYPQKPL TTR+ME 
Sbjct: 361  CASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNYIQRMDTMSNILYYPQKPLATTRSMEF 420

Query: 777  LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
            L FR+LPAG NAIVAIA YSGYNQEDSVIMNQSSIDRG FRSLF+RSY D+EKK+G    
Sbjct: 421  LKFRELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKLGMSQM 480

Query: 837  EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR- 894
            E F RP R +T+ ++ G+YDK+D+DG+  PG RV G+D+IIGKT P++ D E  GQ ++ 
Sbjct: 481  ESFERPMRDDTLRIKRGTYDKIDEDGIIAPGVRVIGDDIIIGKTAPLAPDAEELGQRTKG 540

Query: 895  YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
             T+RD S  LR +E G+VD+VL+T NADG RFVKVR+R+ ++PQIGDKF+SRHGQKGT+G
Sbjct: 541  QTKRDVSTPLRSTEQGIVDRVLVTVNADGQRFVKVRMRTTKVPQIGDKFASRHGQKGTIG 600

Query: 955  MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
            +TY QEDMP+T EGI PD+I+NPHAIPSRMTI  LIEC + KVAA  G EGDATPFTD+T
Sbjct: 601  ITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVAALQGFEGDATPFTDIT 660

Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
            VD++S+ L + GYQ RGFE MYNGHTG++L A +FLGPTYYQRL+HMVD KI +
Sbjct: 661  VDSVSRLLREHGYQSRGFEVMYNGHTGKKLVAQVFLGPTYYQRLRHMVDXKIXA 714


>gi|103001497|gb|ABF71510.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
            gobiense]
          Length = 695

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/695 (63%), Positives = 530/695 (76%), Gaps = 40/695 (5%)

Query: 403  AGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG- 461
             GPLL  LFRMLF KLT+DV  Y+QKCV+N ++ NL   +K+ TIT+GLKYSLATGNWG 
Sbjct: 1    CGPLLANLFRMLFNKLTKDVYKYLQKCVENNREFNLTLGVKSTTITNGLKYSLATGNWGD 60

Query: 462  QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
            Q  AA ++AGVSQVLNR T+ASTLSHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETP
Sbjct: 61   QKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 120

Query: 522  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
            EGQACGLVKNLALM YITVG+ + PI+EF+ +   E  EE  P   P ATK+FVNG WVG
Sbjct: 121  EGQACGLVKNLALMCYITVGTPSEPIIEFMIQRNMEVLEEYEPQRSPNATKVFVNGVWVG 180

Query: 582  IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ----- 636
            +HRDP  LV T++ LRRR  ++ EV +VRDIR +E +I+TD GR  RPLF+++       
Sbjct: 181  VHRDPAHLVSTVQSLRRRHLISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPKSTN 240

Query: 637  --RLLIKKRDIIALQQ-RESPEDG----------GWHDLVAKGFIEYIDTEEEETTMISM 683
               L++ K  I  L+  ++ P +           GW  LV  G +EY+D EEEET MI M
Sbjct: 241  CGNLVLTKEHINKLEDDKDLPANMDSEEKEAKFFGWDGLVNNGVVEYVDAEEEETVMIVM 300

Query: 684  TINDL-----VQARLHPEEAYAD--------------TYTHCEIHPSLILGVCASIIPFP 724
            T  DL     +QA     EA  D              T+THCEIHPS+ILG+CASIIPFP
Sbjct: 301  TPEDLEISRQIQAGYAMPEASDDLNKRVKAPMNPTAHTWTHCEIHPSMILGICASIIPFP 360

Query: 725  DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
            DHNQSPRNTYQSAMGKQAMG+++TNY  RMDT+A +LYYPQKPL TTR+ME L FR+LPA
Sbjct: 361  DHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPLATTRSMEFLKFRELPA 420

Query: 785  GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR 844
            G NAIVAIACYSGYNQEDSVIMNQSSID G FRSLF+RSY D+EK++G  V E F +P R
Sbjct: 421  GQNAIVAIACYSGYNQEDSVIMNQSSIDHGLFRSLFYRSYTDQEKRIGMSVVEQFEKPMR 480

Query: 845  SNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD-EAQGQASR-YTRRDHSI 902
            S+T+ ++HG+YDKLDDDG+  PG RVSGED+IIGKT PI+ D E  GQ ++ + +RD S 
Sbjct: 481  SDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKLHVKRDVST 540

Query: 903  SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
             LR +E G+VDQVLLTTNA+GLRFVKVR+R+ +IPQIGDKF+SRHGQKGT+G+TY QEDM
Sbjct: 541  PLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDM 600

Query: 963  PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1022
            P+T EGI PD+I+NPHAIPSRMTI  LIEC + KV++  G EGDATPFT+VTVD++SK L
Sbjct: 601  PFTKEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTEVTVDSVSKLL 660

Query: 1023 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQR 1057
             + GYQ RGFE MYNGHTGR+L A +FLGPTYYQR
Sbjct: 661  REHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 695


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.136    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,538,697,654
Number of Sequences: 23463169
Number of extensions: 804754029
Number of successful extensions: 2646719
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 17145
Number of HSP's successfully gapped in prelim test: 3158
Number of HSP's that attempted gapping in prelim test: 2549310
Number of HSP's gapped (non-prelim): 50819
length of query: 1195
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 1041
effective length of database: 8,745,867,341
effective search space: 9104447901981
effective search space used: 9104447901981
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 83 (36.6 bits)