BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000996
(1195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 2363 bits (6125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1142/1194 (95%), Positives = 1171/1194 (98%), Gaps = 5/1194 (0%)
Query: 2 MEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 61
MED+Y + Q +D+EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 3 MEDEY----EPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 58
Query: 62 DESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 121
DESADIEIRPESQHNPG QSDFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRN
Sbjct: 59 DESADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRN 118
Query: 122 LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 181
LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE
Sbjct: 119 LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 178
Query: 182 LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP 241
LGECP DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSMA++QNRPP
Sbjct: 179 LGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPP 238
Query: 242 STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF D
Sbjct: 239 STMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFND 298
Query: 302 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR+KRIKYAKEILQKEMLPHVG G
Sbjct: 299 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVG 358
Query: 362 DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
++CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD
Sbjct: 359 EYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 418
Query: 422 VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 481
VR YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY
Sbjct: 419 VRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 478
Query: 482 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 541
ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG
Sbjct: 479 ASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 538
Query: 542 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601
SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNG WVGIHRDP+MLV+TLRRLRRRVD
Sbjct: 539 SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVD 598
Query: 602 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 661
VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL+IKK+DI LQQRESP++GGWHD
Sbjct: 599 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHD 658
Query: 662 LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721
LVAKG+IEYIDTEEEETTMISMTINDLVQARL+P +AY+DTYTHCEIHPSLILGVCASII
Sbjct: 659 LVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASII 718
Query: 722 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 781
PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 719 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 778
Query: 782 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 841
LPAGINAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR
Sbjct: 779 LPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 838
Query: 842 PDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHS 901
PDR++TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD+AQGQASRYTR+DHS
Sbjct: 839 PDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHS 898
Query: 902 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
Sbjct: 899 TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 958
Query: 962 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA
Sbjct: 959 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1018
Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
LHKCGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
Sbjct: 1019 LHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1078
Query: 1082 AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNS 1141
AEGRSRDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNS
Sbjct: 1079 AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS 1138
Query: 1142 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK D K +KD KKKGA
Sbjct: 1139 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK-DVKLAKDQKKKGA 1191
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 2332 bits (6044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1118/1175 (95%), Positives = 1149/1175 (97%)
Query: 7 DYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 66
+YE + Q E+D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD
Sbjct: 5 EYEPEPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 64
Query: 67 IEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 126
IEIRPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA
Sbjct: 65 IEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 124
Query: 127 PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECP
Sbjct: 125 PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECP 184
Query: 187 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSMAE+QNRPPSTMFV
Sbjct: 185 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFV 244
Query: 247 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
RML+R SAKGGSSGQYIR TLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMME
Sbjct: 245 RMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMME 304
Query: 307 LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
LLRPSLEEAFVIQNQ VALDYIGKRGATVGVT++KRIKYA++ILQKEMLPHVG G+ CET
Sbjct: 305 LLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCET 364
Query: 367 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
KKAYYFGYIIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YV
Sbjct: 365 KKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYV 424
Query: 427 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 486
QKCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS
Sbjct: 425 QKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 484
Query: 487 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 546
HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP
Sbjct: 485 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 544
Query: 547 ILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEV 606
ILEFLEEWGTENFEEISP+VIPQATKIFVNG WVG+HRDP+MLVKTLRRLRRRVDVNTEV
Sbjct: 545 ILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEV 604
Query: 607 GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
GVVRDIRLKELRIYTDYGRCSRPLFIV+ Q+LLIKKRDI ALQQRES E+ GWH LVAKG
Sbjct: 605 GVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKG 664
Query: 667 FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
FIEYIDTEEEETTMISMTI+DLVQARL PEEAY + YTHCEIHPSLILGVCASIIPFPDH
Sbjct: 665 FIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDH 724
Query: 727 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
Sbjct: 725 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 784
Query: 787 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSN 846
NAIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +
Sbjct: 785 NAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGS 844
Query: 847 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRH 906
TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQ+SRYTRRDHSISLRH
Sbjct: 845 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRH 904
Query: 907 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 905 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTI 964
Query: 967 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1026
EG+TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG
Sbjct: 965 EGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1024
Query: 1027 YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1086
YQMRGFE MYNGHTGR LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1025 YQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1084
Query: 1087 RDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRG 1146
RDGGLRFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRG
Sbjct: 1085 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRG 1144
Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
CKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTK
Sbjct: 1145 CKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTK 1179
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 1704 bits (4412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 817/1187 (68%), Positives = 978/1187 (82%), Gaps = 28/1187 (2%)
Query: 1 MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
MM DD +++ +I+QED W VISAYF+EKGLVRQQLDSFDEFIQNTMQEI
Sbjct: 5 MMNDD---------SQDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEI 55
Query: 61 VDESADIEIRPESQHNPGQQ--SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAAR 118
+DES I +RPESQH+PGQ S+ T + + FGQIYLSKP E DG + + P AR
Sbjct: 56 IDESPPITLRPESQHHPGQAVVSNNVST-FSVKFGQIYLSKPT-AEIDGVSQQVTPNQAR 113
Query: 119 LRNLTYSAPLYVDVTKRVIKKGHD-GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEK 177
+RNLTYSAPL+VD+TK V+ G+E + ++FIGKVPIMLRS YC L + ++
Sbjct: 114 IRNLTYSAPLFVDITKTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDR 173
Query: 178 DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQ 237
DLT +GEC +DQGGYFIINGSEKVLIAQEKM+ NHVYVFKK P+KY+YVAE+RS E+
Sbjct: 174 DLTTMGECSFDQGGYFIINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETG 233
Query: 238 NRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY 297
+RP STM+++ML T+ G G I+AT+PYI+ ++P+IIVFRALGFVADKDILEHICY
Sbjct: 234 SRPTSTMYLKMLHNTNK--GPVG--IKATVPYIKQDVPVIIVFRALGFVADKDILEHICY 289
Query: 298 DFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPH 357
DF+D QMM+L+RPSLEE+FVIQ+Q+VALDY+GKRG+T+G TR++RIK+A+E+LQKEMLPH
Sbjct: 290 DFKDAQMMDLMRPSLEESFVIQSQEVALDYLGKRGSTMG-TREQRIKFAREVLQKEMLPH 348
Query: 358 VGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRK 417
V +F ETKKA+YFGYI HRLLL +L RR DDRDH+ NKRLDLAGPLLG LFR LF+K
Sbjct: 349 VSVAEFYETKKAFYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKK 408
Query: 418 LTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLN 477
LT+DVR Y+Q+C+D K+ A+K+KTITSGLKYSLATGNWG + + GT++GV+QVLN
Sbjct: 409 LTKDVRLYLQRCIDKDKEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLN 468
Query: 478 RLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVY 537
RLT+ASTLSHLRRLN+PIGREGKLAKPRQLHN+ WG++CP+ETPEGQACGLVKNLA+M Y
Sbjct: 469 RLTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSY 528
Query: 538 ITVGSAAYPILEFLEEWGTENFEEISP-AVIPQATKIFVNGCWVGIHRDPEMLVKTLRRL 596
I+VGSA+ PILEFLEEW TEN EEIS + I ATKIFVNG WVGIH P+ L+ TLR L
Sbjct: 529 ISVGSASQPILEFLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLL 588
Query: 597 RRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 656
RR DV+ EV VVRDIR KELR+YTD GRC RPLF+V+ ++ IKK+ I L + +
Sbjct: 589 RRCGDVSVEVSVVRDIREKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINND---E 645
Query: 657 GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
W DL+++G +EYID EEEET +I+MT DLV P E TYTHCEIHPS+ILG+
Sbjct: 646 YKWQDLLSEGIVEYIDAEEEETVLIAMTPEDLVPM---PNEQIVHTYTHCEIHPSMILGI 702
Query: 717 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
C SIIPFPDHNQSPRNTYQ+AMGKQAMG+Y+TNYQ RMDT+A+VL+YPQKPLVTTR+ME+
Sbjct: 703 CCSIIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEY 762
Query: 777 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK 836
LHFR+LPAG N VAIACYSGYNQEDSVI+NQS+IDRG FRS+F+R+Y+DE+KK +L++
Sbjct: 763 LHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQTSLME 822
Query: 837 EDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI--SQDEAQGQASR 894
E F +P+R GMRHGSY+K+DDDGL PG RV+G+D+IIGKTTP+ S D+ + R
Sbjct: 823 EVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRR 882
Query: 895 YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVG 954
+T+RD S +LR SETG+VDQV+LTT+ +G +F KVRVRS+R+PQIGDKFSSRHGQKGT G
Sbjct: 883 HTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCG 942
Query: 955 MTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVT 1014
M Y QED+P+TVEGI PDIIVNPHAIPSRMTIGQLIEC++GKV+A G EGDATPFTDVT
Sbjct: 943 MAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVT 1002
Query: 1015 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1074
V+ IS+ALHK GYQM G E MYNGHTGRR+ A IF+GPTYYQRLKHMVDDKIHSR RGPV
Sbjct: 1003 VEAISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPV 1062
Query: 1075 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAI 1134
QILTRQP EGRSRDGGLRFGEMERDCMI+HGA+ FLKERLFDQSD+YRVH+C+ CGLIAI
Sbjct: 1063 QILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLIAI 1122
Query: 1135 ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
ANLKKNSFECR CKNKT I Q+ +PYA KLLFQELM+M+IAPRM T+
Sbjct: 1123 ANLKKNSFECRRCKNKTQISQIRMPYAAKLLFQELMSMSIAPRMFTQ 1169
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B
PE=1 SV=1
Length = 1174
Score = 1647 bits (4265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/1184 (67%), Positives = 951/1184 (80%), Gaps = 21/1184 (1%)
Query: 6 YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
YD +E Q +E+D+E ++ QE W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2 YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61
Query: 64 SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
+ I+++ E+QH G+ + Y + F QIYLSKP E DG + + P ARLRNLT
Sbjct: 62 APPIDLQAEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119
Query: 124 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
YSAPLYVD+TK VIK +GEE +TQ K FIGK+PIMLRS+YC L +++DL EL
Sbjct: 120 YSAPLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175
Query: 184 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+ +KYAY E RS E+ +RP ST
Sbjct: 176 ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234
Query: 244 MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
++V ML+R AK + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235 IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294
Query: 302 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
+MME+++PSL+EAFVIQ Q VAL++IG RGA GVT++KRIKYAKE+LQKEMLPHVG
Sbjct: 295 PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354
Query: 362 DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L ++
Sbjct: 355 DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414
Query: 422 VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLNRLT
Sbjct: 415 VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474
Query: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475 FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534
Query: 541 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
GS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535 GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594
Query: 601 D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
D + +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++RE + W
Sbjct: 595 DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSW 653
Query: 660 HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
DLVA G +EYIDT EEET M++MT +DL + E AY TYTHCEIHPS+ILGVCAS
Sbjct: 654 QDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCAS 709
Query: 720 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769
Query: 780 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G +E F
Sbjct: 770 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVF 829
Query: 840 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
+P R GMRH YDKLDDDGL PG RVSG+DVIIGKT P ++DE + RYT+
Sbjct: 830 EKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 889
Query: 898 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890 RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949
Query: 958 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V
Sbjct: 950 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009
Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1010 KISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQI 1069
Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIAN 1129
Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
+ +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b
PE=2 SV=2
Length = 1174
Score = 1645 bits (4261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 797/1184 (67%), Positives = 951/1184 (80%), Gaps = 21/1184 (1%)
Query: 6 YDYEEQHQQEEEDEE--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 63
YD +E Q +E+D+E ++ QE W VIS+YF+EKGLVRQQLDSFDEFIQ ++Q IV++
Sbjct: 2 YDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61
Query: 64 SADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 123
+ I+++ E+QH G+ + Y + F QIYLSKP E DG + + P ARLRNLT
Sbjct: 62 APPIDLQAEAQHASGEVEEPPR--YLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLT 119
Query: 124 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 183
YSAPLYVD+TK VIK +GEE +TQ K FIGK+PIMLRS+YC L +++DL EL
Sbjct: 120 YSAPLYVDITKTVIK---EGEEQLQTQ-HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELN 175
Query: 184 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 243
ECP D GGYFIINGSEKVLIAQEKM+TN VYVF K+ +KYAY E RS E+ +RP ST
Sbjct: 176 ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTST 234
Query: 244 MFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQD 301
++V ML+R AK + GQ I ATLPYI+ E+PIIIVFRALGFV+D+DILEHI YDF+D
Sbjct: 235 IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFED 294
Query: 302 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTG 361
+MME+++PSL+EAFVIQ Q VAL++IG RGA GVT++KRIKYAKE+LQKEMLPHVG
Sbjct: 295 PEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354
Query: 362 DFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 421
DFCETKKAY+ GY++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L ++
Sbjct: 355 DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414
Query: 422 VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLT 480
VR Y QK +D GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLNRLT
Sbjct: 415 VRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLT 474
Query: 481 YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 540
+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+V
Sbjct: 475 FASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV 534
Query: 541 GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV 600
GS PILEFLEEW EN EEISPA I ATKIFVNGCWVGIH+DPE L+ TLR+LRR++
Sbjct: 535 GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQM 594
Query: 601 D-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
D + +EV ++RDIR +E+RIYTD GR RPL IVEKQ+LL+KKR I L++RE + W
Sbjct: 595 DIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-NNYSW 653
Query: 660 HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
DLVA G +EYIDT EEET M++MT +DL + E AY TYTHCEIHPS+ILGVCAS
Sbjct: 654 QDLVASGVVEYIDTLEEETVMLAMTPDDLQEK----EVAYCSTYTHCEIHPSMILGVCAS 709
Query: 720 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
IIPFPDHNQSPRNTYQSAMGKQAMG+Y+TN+ RMDTLA+VLYYPQKPLVTTR+ME+L F
Sbjct: 710 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 769
Query: 780 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
R+LPAGIN+IVAIA Y+GYNQEDSVIMN+S++DRGFFRS+F+RSY+++E K G +E F
Sbjct: 770 RELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVF 829
Query: 840 GRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTR 897
+P R GMRH Y+KLDDDGL PG RVSG+DVIIGKT P ++DE + RYT+
Sbjct: 830 EKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTK 889
Query: 898 RDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
RD S LR SETG+VDQV++T N +G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y
Sbjct: 890 RDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949
Query: 958 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVD 1016
QEDMP+T EGITPDII+NPHAIPSRMTIG LIEC+ GKV+A+ G+ GDATPF D V V
Sbjct: 950 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQ 1009
Query: 1017 NISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1076
IS L GY +RG E +YNG TGR++T+ IF+GPTYYQRLKHMVDDKIHSR RGP+QI
Sbjct: 1010 KISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQI 1069
Query: 1077 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIAN 1136
L RQP EGRSRDGGLRFGEMERDC IAHGA+ FL+ERLF+ SD Y+VHVC CG++AIAN
Sbjct: 1070 LNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIAN 1129
Query: 1137 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180
+ +++ECRGC+NKT I V +PYACKLLFQELM+M+IAPRM++
Sbjct: 1130 TRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMS 1173
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 1605 bits (4156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/1168 (66%), Positives = 924/1168 (79%), Gaps = 22/1168 (1%)
Query: 22 EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
E+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S IE++ E+QH G+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGE-- 78
Query: 82 DFAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
ET + + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK K
Sbjct: 79 --VETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---TK 133
Query: 140 GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSE 199
+G + ETQ K FIGK+PIMLRS+YC L Q +++DLTEL ECP D GGYFIINGSE
Sbjct: 134 NVEGLDPVETQH-QKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSE 192
Query: 200 KVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSA--KGG 257
KVLIAQEKM+TN VYVF + KYA+ E+RS E +RP ST++V M++R S K
Sbjct: 193 KVLIAQEKMATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKS 251
Query: 258 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFV 317
+ GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFV
Sbjct: 252 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 311
Query: 318 IQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
+Q Q VAL++IG RGA GVT+DKRIKYAKEILQKEMLPHVG DFCETKKAY+ GY++H
Sbjct: 312 VQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVH 371
Query: 378 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 437
RLLL +LGRR DDRDHYGNKRLDLAGPLL LFR LF+ L ++VR Y QK +D GKD N
Sbjct: 372 RLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFN 431
Query: 438 LQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 496
L+ AIK IT GL+YSLATGNWG Q A RAGVSQVLNRLT+ASTLSHLRR+NSPIG
Sbjct: 432 LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIG 491
Query: 497 REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 556
R+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW
Sbjct: 492 RDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 551
Query: 557 ENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLK 615
EN EEI+P+ I ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +
Sbjct: 552 ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDR 611
Query: 616 ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
E+RIYTD GR RPL IVE LL+KK + L++R+ + W LVA G +EYIDT E
Sbjct: 612 EIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDY-NNYSWQVLVASGVVEYIDTLE 670
Query: 676 EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
EET MI+M+ DL Q + + AY TYTHCEIHP++ILGVCASIIPFPDHNQSPRNTYQ
Sbjct: 671 EETVMIAMSPYDLKQDK---DYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 727
Query: 736 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
SAMGKQAMG+Y+TN+ RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY
Sbjct: 728 SAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCY 787
Query: 796 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
+GYNQEDSVI+N S+++RGFFRS+F+RSY+D E K +E+F +P R GMR+ Y
Sbjct: 788 TGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHY 847
Query: 856 DKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
DKLDDDG+ PG RVSG+DV+IGKT P + DE R+++RD S LR+SETG+VD
Sbjct: 848 DKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVD 907
Query: 914 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
QV+LT N++G +F K+RVRSVRIPQIGDKF+SRHGQKGT G+ Y QEDM +T EG+ PDI
Sbjct: 908 QVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDI 967
Query: 974 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGF 1032
I+NPHAIPSRMTIG LIEC+ GK+ ++ G+ GDATPF D V V IS L + GY +RG
Sbjct: 968 IINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGN 1027
Query: 1033 ETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 1092
E MYNGHTGR++ A +FLGPTYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 1028 EVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 1087
Query: 1093 FGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTD 1152
FGEMERDC I+HGA+ FL+ERLF+ SD YRVH+C CGLIAIANL+ N+FEC+GCKNKT
Sbjct: 1088 FGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQ 1147
Query: 1153 IVQVHIPYACKLLFQELMAMAIAPRMLT 1180
I QV +PYA KLLFQELM+M IAPR++
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNIAPRLMV 1175
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 1587 bits (4110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/1209 (62%), Positives = 940/1209 (77%), Gaps = 47/1209 (3%)
Query: 15 EEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 74
E+ E +TQED W VIS++FEE L RQQL SFDEF+QNTMQEIVD+ + + + +Q
Sbjct: 4 EDYQYNETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQ 63
Query: 75 HNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK 134
H G Q D Y+I+FGQIYLS+P MTE+DG T T+FP+ ARLRNLTYS+PLYVD+ K
Sbjct: 64 HT-GAQGDVTRR-YEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRK 121
Query: 135 RVIKKGHDGEEVTETQDF--------TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
+V+ + E + +KVFIGK+PIMLRS++C L S+ +L +L ECP
Sbjct: 122 KVMVAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECP 181
Query: 187 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
YDQGGYFIINGSEKV+IAQE+ + N V VFKK P+ AYVAE+RS E +R S+M +
Sbjct: 182 YDQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQI 241
Query: 247 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
++++R + +SGQ IRATLPYIR++IPI+IVFRALG V D+DILEHICYD D QM+E
Sbjct: 242 KLMARNTE---NSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLE 298
Query: 307 LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
+++P +EEAFVIQ++ +ALDYIGKRG+T GVTR+KR++YA +ILQKE+LPH+ T + ET
Sbjct: 299 MMKPCIEEAFVIQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFET 358
Query: 367 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
+KA++ GY+IHR+LLCAL RR DDRDH+G KRLDLAGPLL LFRMLFRK+TRDV Y+
Sbjct: 359 RKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYM 418
Query: 427 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
QKCV+ ++ NL A+K+ IT+GL+YSLATGNWG Q + R GVSQVLNR T+ASTL
Sbjct: 419 QKCVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTL 478
Query: 486 SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
SHLRR N+PIGR+GKLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM Y++VGS +
Sbjct: 479 SHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSA 538
Query: 546 PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
PI+EFLEEWG E E+ +P+ P ATK+FVNG W+G+HRDP L +TLR LRRR+D++ E
Sbjct: 539 PIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAE 598
Query: 606 VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQ-------RLLIKKRDIIALQQRES----- 653
V +VRDIR KELR++TD GR RPLFIV+ L I+K I L + +
Sbjct: 599 VSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDID 658
Query: 654 PEDG-GWHDLVAKGFIEYIDTEEEETTMISMTINDL-----------VQARLHPEE---- 697
PE GW LV+ G IEY+D EEEET MI+M+ DL V+ L P +
Sbjct: 659 PEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKP 718
Query: 698 ---AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
+ +THCEIHP++ILG+ ASIIPFPDHNQSPRNTYQSAMGKQAMG+Y+TNYQ RM
Sbjct: 719 APNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRM 778
Query: 755 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
DT+A +LYYPQKPL TTR+ME+L FR+LPAG NAIVAI CYSGYNQEDS+IMNQ+SIDRG
Sbjct: 779 DTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRG 838
Query: 815 FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
FRS+F+R+Y D+EKK+G V E+F RP RS T+ M+HG+YDKL+DDGL PGTRVSGED
Sbjct: 839 LFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGED 898
Query: 875 VIIGKTTPISQD-EAQGQASR-YTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVR 932
+IIGKT PI D E GQ ++ + +RD S LR +E+G+VDQV++TTN +GL+FVKVR+R
Sbjct: 899 IIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMR 958
Query: 933 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 992
S RIPQIGDKF+SRHGQKGT+GMTY EDMP++ +GI PDII+NPHAIPSRMT+ L+EC
Sbjct: 959 STRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVEC 1018
Query: 993 IMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGP 1052
+ KV+A G EGDATPFTDVTV+ +SK L G+Q RGFE MY+GHTGR+L A +FLGP
Sbjct: 1019 QLSKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGP 1078
Query: 1053 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKE 1112
TYYQRLKH+VDDKIH+R RGPVQILTRQP EGRSRDGGLRFGEMERDC I+HG S L+E
Sbjct: 1079 TYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRE 1138
Query: 1113 RLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAM 1172
RLFD SDAYRV VC+ CGLIAIA+ KK+S+ECR C+N+T QV++PYA KLLFQELM+M
Sbjct: 1139 RLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSM 1198
Query: 1173 AIAPRMLTK 1181
IAPR+ TK
Sbjct: 1199 NIAPRLFTK 1207
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans
GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 1558 bits (4034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 751/1189 (63%), Positives = 909/1189 (76%), Gaps = 26/1189 (2%)
Query: 18 DEEEEIT----QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPES 73
D+ +EI+ QE W VISAYF+EKGLVRQQLDSFDEF+Q +Q IV++S +E++ E+
Sbjct: 19 DDSDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSEN 78
Query: 74 QHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVT 133
QH + A+ + + F QIYLSKP E DG + P ARLRNLTY++PLYVD+T
Sbjct: 79 QHLGTDMENPAK--FSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDIT 136
Query: 134 KRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF 193
K V + E+V + KVF+GKVP+MLRSSYC L +++DLTEL ECP D GGYF
Sbjct: 137 KVVTRDDSATEKV-----YDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYF 191
Query: 194 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS 253
+INGSEKVLIAQEKM+TN VYVF + KYA+ E RS E+ +RP STM+V ML+R
Sbjct: 192 VINGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKTECRSCLENSSRPTSTMWVNMLARGG 250
Query: 254 AKGGSS--GQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPS 311
G + GQ I LPYI+ EIPI+IVFRALGFV+D+DIL HI YDF D +MME+++PS
Sbjct: 251 GGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPS 310
Query: 312 LEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYY 371
L+EAFVIQ Q VAL++IG RGA GVTR++RIKYA+EILQKE+LPHVG + CETKKA++
Sbjct: 311 LDEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFF 370
Query: 372 FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 431
GY++HRLLL ALGRR DDRDH GNKRLDLAGPLL LFR LFR L +++R QK ++
Sbjct: 371 IGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYIN 430
Query: 432 NGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRR 490
D L +K TIT GL YSLATGNWG Q A +RAGVSQVLNRLTY +TLSHLRR
Sbjct: 431 KNDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRR 490
Query: 491 LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 550
NSPIGREGKLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI+VGS PILEF
Sbjct: 491 ANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEF 550
Query: 551 LEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDV-NTEVGVV 609
LEEW EN EE+SP+ I ATKIFVNG WVGIHR+P+ L+ TL++LRR++D+ +EV +V
Sbjct: 551 LEEWSMENLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMV 610
Query: 610 RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG-GWHDLVAKGFI 668
RDIR +E+RIYTD GR RPL IVE Q+L +KKR I L++ + W DLV G +
Sbjct: 611 RDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVV 670
Query: 669 EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
E ID+ EEET+MI+M DL Y DT+THCEIHP++ILGVCASIIPFPDHNQ
Sbjct: 671 ELIDSMEEETSMIAMMPEDLRSG------GYCDTHTHCEIHPAMILGVCASIIPFPDHNQ 724
Query: 729 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
SPRNTYQSAMGKQAMG+Y TN+ RMDTLA+VLYYPQKPLVTTR+ME+L F +LPAGINA
Sbjct: 725 SPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINA 784
Query: 789 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
IVAI YSGYNQEDSVIMN S+IDRG FRS+F+RSYRD E + +E +P R
Sbjct: 785 IVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCS 844
Query: 849 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEAQGQASRYTRRDHSISLRH 906
GMRH YDKLD+DG+ PG RVSG+DVIIGKT P D+ +Y +RD S LR
Sbjct: 845 GMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRS 904
Query: 907 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 966
SETG+VDQV+L+ N+DG +FVK+R+RSVR+PQIGDKF+SRHGQKGT+G+ Y QEDMP+T
Sbjct: 905 SETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTA 964
Query: 967 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD-VTVDNISKALHKC 1025
EG+TPDII+NPHA+PSRMTIG LIEC+ GK++A+ G+ GDATPF D V V IS L +
Sbjct: 965 EGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEY 1024
Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
GY +RG E MYNGHTG++LT IF GPTYYQRLKHMVDDKIHSR RGP+Q++ RQP EGR
Sbjct: 1025 GYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGR 1084
Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECR 1145
+RDGGLRFGEMERDC I+HGA+ FL+ERLF+ SD Y V+VC +CGLI +ANL+ NSFEC+
Sbjct: 1085 ARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECK 1144
Query: 1146 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKG 1194
C+NKT + V IPYACKLLFQELM+M+IAPR++ K + H+ +
Sbjct: 1145 ACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVKPRQSKRSKHQSEA 1193
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2
Length = 1224
Score = 1537 bits (3979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 743/1206 (61%), Positives = 921/1206 (76%), Gaps = 48/1206 (3%)
Query: 17 EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
EDE IT ED+WAVISA+F EKGLV QQLDSF++F+ T+Q+I+ E + + + +QH
Sbjct: 19 EDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHT 78
Query: 77 PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
+SD Y+ISFG+IY++KPM+ ESDG T L+P+ ARLRNLTYS+ L+VDV KR
Sbjct: 79 --TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRT 136
Query: 137 ----------IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
+K EE + + KVFIG++PIMLRS C L + +E DL +L ECP
Sbjct: 137 YEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECP 196
Query: 187 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
+D GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+RS E +R ST+ V
Sbjct: 197 FDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQV 256
Query: 247 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
++ R GSS + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD D QM+E
Sbjct: 257 KLYGRE----GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLE 312
Query: 307 LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
+L+P +E+ FVIQ+++ ALD+IG+RG +G+ ++KRI+YAK+ILQKE LPH+ + E+
Sbjct: 313 MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 372
Query: 367 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
+KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+ LF+KLT+D+ Y+
Sbjct: 373 RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYM 432
Query: 427 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
Q+ V+ D N++ AI AKTITSGLKY+LATGNWG Q A +RAGVSQVLNR TY+STL
Sbjct: 433 QRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 492
Query: 486 SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
SHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+
Sbjct: 493 SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 552
Query: 546 PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
PI+ FL EWG E E+ P P AT++FVNG W G+HR+P L++TLR LRR+ D+N E
Sbjct: 553 PIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPE 612
Query: 606 VGVVRDIRLKELRIYTDYGRCSRPLFIVEK------QRLLIKKRDIIALQQRESPE-DGG 658
V ++RDIR KEL+I+TD GR RPLFIVE + L ++K I L E + +GG
Sbjct: 613 VSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGG 672
Query: 659 --------WHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEE------------- 697
W L+ +G +EYID EEEE+ +I+M DL A + E
Sbjct: 673 FEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVS 732
Query: 698 AYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTL 757
+A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+
Sbjct: 733 HHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTM 792
Query: 758 AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817
A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSIDRG FR
Sbjct: 793 ANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 852
Query: 818 SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877
SLFFRSY D+EKK G + E F +P R+NT+ M+HG+YDKLDDDGL PG RVSGEDVII
Sbjct: 853 SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVII 912
Query: 878 GKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 935
GKTTPIS DE + GQ + Y ++RD S LR +E G+VDQVL+TTN DGL+FVKVRVR+ +
Sbjct: 913 GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTK 972
Query: 936 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995
IPQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPHAIPSRMT+ LIEC++
Sbjct: 973 IPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1032
Query: 996 KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYY 1055
KVAA G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNGHTG++L A IF GPTYY
Sbjct: 1033 KVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYY 1092
Query: 1056 QRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLF 1115
QRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL
Sbjct: 1093 QRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLM 1152
Query: 1116 DQSDAYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1174
+ SDA+RVH+C CGL+ IA L N FEC+GC NK DI Q+HIPYA KLLFQELMAM I
Sbjct: 1153 EASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNI 1212
Query: 1175 APRMLT 1180
PR+ T
Sbjct: 1213 TPRLYT 1218
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 1534 bits (3972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/1222 (61%), Positives = 928/1222 (75%), Gaps = 62/1222 (5%)
Query: 17 EDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 76
+D+ IT ED W VIS++F+EKGLV QQLDSFDEFI++T+QE+V E + + + +QH
Sbjct: 12 DDDSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHT 71
Query: 77 PGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 136
+ D Y+I+FG+IY+SKP TE DG T +FP+ ARLRNLTYS+PLYVD+TKRV
Sbjct: 72 --SEEDHENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRV 129
Query: 137 IKKGHDG----------EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 186
+K + EE+ + + TKV++GKVPIMLRS +C L E + EL ECP
Sbjct: 130 LKSDDNAGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECP 189
Query: 187 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFV 246
YD GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+RS E +R S+M +
Sbjct: 190 YDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQI 249
Query: 247 RMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMME 306
++ R + +S + I+ATLPYI+ +IPI+IVFRALG V D DILEHICYD D QM+E
Sbjct: 250 KLYGR--EEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLE 307
Query: 307 LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCET 366
+L+P +EE FVIQ ++VALD+IG+RGA +G+ R+KRI+YAK+ILQKE+LP++ + ET
Sbjct: 308 MLKPCVEEGFVIQEREVALDFIGRRGA-LGIKREKRIQYAKDILQKELLPNITQDEGFET 366
Query: 367 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 426
+KA++ GY+++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR+LF+KLT+D+ Y+
Sbjct: 367 RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYM 426
Query: 427 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTL 485
Q+CV+N K NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLNR TY+STL
Sbjct: 427 QRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 486
Query: 486 SHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 545
SHLRR N+PIGR+GK+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+ +
Sbjct: 487 SHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSE 546
Query: 546 PILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
PIL FLEEWG E E+ P+ P +T++FVNG WVG HR+P LV T+R LRRR D++ E
Sbjct: 547 PILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPE 606
Query: 606 VGVVRDIRLKELRIYTDYGRCSRPLFIVE-------KQRLLIKKRDIIALQQRESPEDG- 657
V ++RDIR KE +I+TD GR RPLFIV+ K L ++K I L E E+
Sbjct: 607 VSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYA 666
Query: 658 -----------GWHDLVAKGFIEYIDTEEEETTMISMTINDL----------VQARLHPE 696
GW LV G +EY+D EEEET MI+MT DL Q L E
Sbjct: 667 TNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLE 726
Query: 697 EAYAD--------------TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA 742
E D T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGKQA
Sbjct: 727 EQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQA 786
Query: 743 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED 802
MG+++TNY RMDT+A +LYYPQKPL TTRAMEHL FR+LPAG NAIVAIACYSGYNQED
Sbjct: 787 MGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQED 846
Query: 803 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDG 862
S+IMNQSSIDRG FRSLFFR+Y D EK+ G E F +P RS+T+ ++HG+Y+KLDDDG
Sbjct: 847 SMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDG 906
Query: 863 LAPPGTRVSGEDVIIGKTTPISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTN 920
L PG RVSGED+IIGKTTPI D E GQ ++Y T+RD S LR +E+G+VDQVLLTTN
Sbjct: 907 LIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTN 966
Query: 921 ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 980
DG +FVKVR+R+ ++PQIGDKF+SRHGQKGTVG+TY EDMP+T +GI PD+I+NPHAI
Sbjct: 967 GDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAI 1026
Query: 981 PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHT 1040
PSRMT+ LIEC++ KV++ G EGDA+PFTDVT + +SK L + GYQ RGFE MY+GHT
Sbjct: 1027 PSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYHGHT 1086
Query: 1041 GRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 1100
G++L A +F GPTYYQRL+HMVDDKIH+R RGPVQ+LTRQP EGRSRDGGLRFGEMERDC
Sbjct: 1087 GKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDC 1146
Query: 1101 MIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVHIP 1159
MIAHGA+ FLKERL + SDA+RVHVC CGL++ IANLKKN FECR CKNKT+I Q+HIP
Sbjct: 1147 MIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHIP 1206
Query: 1160 YACKLLFQELMAMAIAPRMLTK 1181
YA KLLFQELMAM I+PR+ T+
Sbjct: 1207 YAAKLLFQELMAMNISPRLYTE 1228
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 1534 bits (3971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 745/1223 (60%), Positives = 929/1223 (75%), Gaps = 49/1223 (4%)
Query: 1 MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI 60
M D+ DY ++ E+E IT ED WAVISA+F EKGLV QQLDSF++F+ T+Q+I
Sbjct: 1 MSADNEDYYDEDPYGFEEENAPITAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDI 60
Query: 61 VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR 120
+ E + + + +QH Q D Y+ISFG+IY++KPM+ ESDG T L+P+ ARLR
Sbjct: 61 ISEDSTLILEQLAQHTTEQ--DNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLR 118
Query: 121 NLTYSAPLYVDVTKRVIKK----GHD------GEEVTETQDFTKVFIGKVPIMLRSSYCT 170
NLTYS+ L+VDVTKR + G D EE E + KVFIG++PIMLRS C
Sbjct: 119 NLTYSSGLFVDVTKRTYEAVDVPGRDLNYQLIAEESEEDSESGKVFIGRLPIMLRSKNCY 178
Query: 171 LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 230
L +E DL +L ECP+D GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+
Sbjct: 179 LSDATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI 238
Query: 231 RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290
RS E +R ST+ V++ R S SS + I+ATLPYI+ +IPI+I+FRALG + D +
Sbjct: 239 RSALEKGSRFISTLQVKLYGRES----SSARTIKATLPYIKQDIPIVIIFRALGIIPDGE 294
Query: 291 ILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEIL 350
ILEHICYD D QM+E+L+P +E+ FVIQ+++ ALD+IG+RG +G+ ++KRI+YAK+IL
Sbjct: 295 ILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDIL 354
Query: 351 QKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 410
QKE LPH+ + E++KA++ GY+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL L
Sbjct: 355 QKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQL 414
Query: 411 FRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTR 469
F+ LFRKLT+D+ Y+Q+ V+ D N++ AI AKTITSGLKY+LATGNWG Q A +R
Sbjct: 415 FKTLFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSR 474
Query: 470 AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLV 529
AGVSQVLNR TY+STLSHLRR N+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLV
Sbjct: 475 AGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLV 534
Query: 530 KNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEML 589
KNL+LM I+VG+ PI+ FL EWG E E+ P P AT++FVNG W G+HR+P L
Sbjct: 535 KNLSLMSCISVGADPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARL 594
Query: 590 VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE------KQRLLIKKR 643
++TLR LRR+ D+N EV ++RDIR +EL+I+TD GR RPLFIVE ++ L ++K
Sbjct: 595 METLRTLRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKG 654
Query: 644 DIIALQQRE---------SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 694
+ L E ED W L+ +G +EYID EEEE+ +I+M DL +
Sbjct: 655 HVAKLMATEYQDIEGGFEDAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVE 714
Query: 695 ---PEEA-----------YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGK 740
P+E +A T+THCEIHPS+ILGV ASIIPFPDHNQSPRNTYQSAMGK
Sbjct: 715 QDIPKENVDLAKRIKVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGK 774
Query: 741 QAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQ 800
QAMG+++TNY FRMDT+A +LYYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQ
Sbjct: 775 QAMGVFLTNYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQ 834
Query: 801 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDD 860
EDS+IMNQSSIDRG FRSLFFRSY D+EKK G + E F +P R+NT+ M+HG+YDKLD+
Sbjct: 835 EDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDE 894
Query: 861 DGLAPPGTRVSGEDVIIGKTTPISQDEAQ-GQASRY-TRRDHSISLRHSETGMVDQVLLT 918
DGL PG RVSGED+IIGKTTPI+ DE + GQ + Y ++RD S LR +E G+VDQVL+T
Sbjct: 895 DGLIAPGVRVSGEDIIIGKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLIT 954
Query: 919 TNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 978
TN DGL+FVKVRVR+ ++PQIGDKF+SRHGQKGT+G+TY +EDMP+T EGI PD+I+NPH
Sbjct: 955 TNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPH 1014
Query: 979 AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNG 1038
AIPSRMT+ LIEC++ KVAA G EGDA+PFTD+TV+ ISK L + GYQ RGFE MYNG
Sbjct: 1015 AIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNG 1074
Query: 1039 HTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 1098
HTG++L A IF GPTYYQRL+HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMER
Sbjct: 1075 HTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMER 1134
Query: 1099 DCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIA-IANLKKNSFECRGCKNKTDIVQVH 1157
DCMIAHGA+ FLKERL + SDA+RVH+C CGL++ IA L N FEC+GC NK DI Q+H
Sbjct: 1135 DCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIYQIH 1194
Query: 1158 IPYACKLLFQELMAMAIAPRMLT 1180
IPYA KLLFQELMAM I PR+ T
Sbjct: 1195 IPYAAKLLFQELMAMNITPRLYT 1217
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 1517 bits (3927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 731/1202 (60%), Positives = 919/1202 (76%), Gaps = 50/1202 (4%)
Query: 23 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSD 82
IT ED+W VISA+F EKGLV QQLDSF++FI T+Q+++ E + + + +QH ++D
Sbjct: 21 ITAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHT--TEAD 78
Query: 83 FAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK--- 139
Y+ISFG+IYL+KP MTESDG + ++P+ ARLRNLTY++ L+V++ KR +
Sbjct: 79 NISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDI 138
Query: 140 -GHDG-----EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYF 193
G D +E +E + K+FIG+VPIMLRS YC L SE DL L ECP+D GGYF
Sbjct: 139 PGRDLKYEIIQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYF 198
Query: 194 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTS 253
IINGSEKVLIAQE+ + N V VFKK P+ +++AE+RS E +R ST+ V++ R
Sbjct: 199 IINGSEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGRE- 257
Query: 254 AKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLE 313
GS+ + I+ATLPYI+ +IPI+I+FRALG + D +ILEHICYD D QM+E+L+P +E
Sbjct: 258 ---GSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVE 314
Query: 314 EAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFG 373
E FVIQ+++ ALD+IG+RG +G+ ++KRI+YAK+ILQKE LPH+ + E++KA++ G
Sbjct: 315 EGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLG 374
Query: 374 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNG 433
Y+I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+ LFRKLTRD+ ++Q+ V+
Sbjct: 375 YMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEA 434
Query: 434 KDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
KD NL+ A+KA TIT+GLKY+LATGNWG Q A +RAGVSQVLNR TY+STLSHLRR N
Sbjct: 435 KDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTN 494
Query: 493 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
+PIGR+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+ PI+ FL
Sbjct: 495 TPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPIITFLN 554
Query: 553 EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
EWG E E+ P P AT++FVNG W GIHR+P LV T+R+LRR+ D+ EV +VRDI
Sbjct: 555 EWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGDITAEVSIVRDI 614
Query: 613 RLKELRIYTDYGRCSRPLFIVEKQR-------LLIKKRDIIALQQRESPE-DGG------ 658
R KEL+I+TD GR RPLF+V + L ++K I L E + +GG
Sbjct: 615 REKELKIFTDAGRVYRPLFVVADTQHADGHKDLKVRKGHIRKLMLTEYQDIEGGFEDEDI 674
Query: 659 ---WHDLVAKGFIEYIDTEEEETTMISMTINDL---VQARLHPEEA-----------YAD 701
W L+ G +EYID EEEET +I+M DL V + P + +++
Sbjct: 675 NYTWTSLLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQTVDPSDELDPARRIKAIHHSN 734
Query: 702 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVL 761
T+THCEIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A +L
Sbjct: 735 TFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANIL 794
Query: 762 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFF 821
YYPQKPL TTRAME+L FR+LPAG NAIVAIACYSGYNQEDS+IMNQSSID G FRSLFF
Sbjct: 795 YYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLFRSLFF 854
Query: 822 RSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT 881
RSY D+EK++G + E F +P R+NT+ M+HG+Y+KLDDDGL PG RVSG+D+IIGKTT
Sbjct: 855 RSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYEKLDDDGLIAPGVRVSGDDIIIGKTT 914
Query: 882 PISQD-EAQGQASRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQI 939
PI D E GQ + + ++RD S LR +E G+VDQVL+TTN +GL+FVKVRVR+ ++PQI
Sbjct: 915 PIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQI 974
Query: 940 GDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 999
GDKF+SRHGQKGT+G+TY +EDMP+T EG+ PD+I+NPHAIPSRMT+ LIEC++ KVAA
Sbjct: 975 GDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAA 1034
Query: 1000 HMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLK 1059
G EGDA+PFTD+TVD ISK L + GYQ RGFE MYNGHTG++L A IF GPTYYQRL+
Sbjct: 1035 LSGNEGDASPFTDITVDGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLR 1094
Query: 1060 HMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSD 1119
HMVDDKIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGA+ FLKERL + SD
Sbjct: 1095 HMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASD 1154
Query: 1120 AYRVHVCEHCGLI-AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
A+RVH+C CGL+ +A LK N FECRGCKNK DI QVHIPYA KLLFQELMAM IAPR+
Sbjct: 1155 AFRVHICGICGLMTVVAKLKHNQFECRGCKNKIDIYQVHIPYAAKLLFQELMAMNIAPRL 1214
Query: 1179 LT 1180
T
Sbjct: 1215 YT 1216
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 1451 bits (3757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/1166 (59%), Positives = 884/1166 (75%), Gaps = 29/1166 (2%)
Query: 20 EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
E T+E +W++IS++FE+KGLVRQQLDSFD+F++ MQE+++ES I ++
Sbjct: 2 ESAFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAPTAGIET 61
Query: 80 QSDFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIK 138
Q A + FGQIY+SKP + TESDG T T+FP AR+R+LTY++PL++DVTK +
Sbjct: 62 QKRIA-----VRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLS 116
Query: 139 KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
+ V + +++V G +P+MLRSSYC LY +KDL +LGECPYDQGGYFI+NGS
Sbjct: 117 E----LGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGS 172
Query: 199 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
EKV++AQE+M++N VYVFKK QP Y + AE+RS+ E +R PST+ S K
Sbjct: 173 EKVIVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTL--------SMKLCR 224
Query: 259 SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
S IR +LP ++ ++P+ +++RALGF++DK+I++HI Y+ D +M ELL+ S+EE V+
Sbjct: 225 SPGVIRVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVV 283
Query: 319 QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
Q+Q VALDYIGKR A +G ++KRI AK++L KE+LPH+GT +FCETKKAY+ GYI+ R
Sbjct: 284 QDQNVALDYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQR 343
Query: 379 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 438
LLL ALGRR DDRDHYG KR+DL+GPLL LFR LF+KL D ++QKC++NG++ N+
Sbjct: 344 LLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGREFNI 403
Query: 439 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
+KA IT G +Y+LATGNWG QA A TRAGV+QVLNR + STLSHLRR+N+PI +
Sbjct: 404 ALGLKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEK 463
Query: 498 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
EGKLA PRQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI+VGS++ P++EFLEE G E
Sbjct: 464 EGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVE 523
Query: 558 NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 617
+ EEIS + + ATKIFVNG WVGIH DP L+K+L+ LRR ++++ EV +VRDIR KE+
Sbjct: 524 SLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEI 583
Query: 618 RIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEE 677
R+ +D GR RPL +V+ +L+I DI L++ E W +LV GFIE++D EEEE
Sbjct: 584 RVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIK----WDNLVTSGFIEFLDVEEEE 639
Query: 678 TTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 737
+MI+M L + + +YTHCEIHP+LILG+CAS IPFPDHNQSPRNTYQSA
Sbjct: 640 MSMIAMNTKILADESRNSSDVSV-SYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSA 698
Query: 738 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 797
MGKQAMGIY TN+ RMDTL+ +L+YPQKPLVTT++ME+L F++LP+G NA+VAIACYSG
Sbjct: 699 MGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSG 758
Query: 798 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDK 857
YNQEDS+IMNQS+IDRG FRS F+R+Y D+E V E+F +P R + M++ +Y+K
Sbjct: 759 YNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLNYNK 818
Query: 858 LDDDGLAPPGTRVSGEDVIIGKTTPISQDE-AQGQASRYTRRDHSISLRHSETGMVDQVL 916
LDDDGL PGTRV+G+DV+IGK TPI E + +A Y +D S ++R +ETG+VD V+
Sbjct: 819 LDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVI 878
Query: 917 LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 976
+T N DG +F KV+VRS RIPQ+GDKF+SRH QKGT+G+T QEDMP+T EGI PDII+N
Sbjct: 879 VT-NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIIN 937
Query: 977 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1036
PHAIPSRMTIG LIEC++GKV+A G+EGDATPF+ VTVD IS L G+Q RG E MY
Sbjct: 938 PHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPFSGVTVDGISSRLKSYGFQQRGLEVMY 997
Query: 1037 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1096
NG TGR+L A +F GPTYYQRLKHMVDDKIH+R RGP+QILTRQP EGRSRDGGLRFGEM
Sbjct: 998 NGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1057
Query: 1097 ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQV 1156
ERDC+I+HGAS FLKERL D SDAY +VC+ CGL+A+ K N EC+GC N T++ V
Sbjct: 1058 ERDCIISHGASAFLKERLMDVSDAYSCYVCDFCGLLAMGGSKVN--ECKGCNNTTNVSMV 1115
Query: 1157 HIPYACKLLFQELMAMAIAPRMLTKE 1182
IPYA KLL QELM M IAPR+ +E
Sbjct: 1116 EIPYAFKLLIQELMGMNIAPRIRFEE 1141
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/1172 (42%), Positives = 700/1172 (59%), Gaps = 75/1172 (6%)
Query: 26 EDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 85
E WA+ ++F+ +GLVRQ LDSF++F++N +Q+++ E +I PG
Sbjct: 5 ESRWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEI-----VTEVPG------- 52
Query: 86 TIYKISFGQIYLSKPMMTESD-GETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 144
KI G+I KP + E+D G + P ARLRNLTYS+P+++ + ++ +GE
Sbjct: 53 --LKIKLGKIRYEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSMIP--VENNIEGE 108
Query: 145 EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 204
+ +++IG +PIML+S L E+GE P D GGYFI+NGSEKV+IA
Sbjct: 109 PI-------EIYIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIA 161
Query: 205 QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 264
QE ++TN V V + + +VA+V S A M R+ T I+
Sbjct: 162 QEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRV--QVMIERLKDST----------IQ 209
Query: 265 ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQNQQVA 324
+ + IP I+ RALGFV D+DI+ + D Q+ L PSLE+A I + + A
Sbjct: 210 ISFATVPGRIPFAIIMRALGFVTDRDIVYAVSLD---PQIQNELLPSLEQASSITSAEEA 266
Query: 325 LDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCAL 384
LD+IG R A +G R+ RI+ A++++ K LPH+GT KK YY ++++L L
Sbjct: 267 LDFIGNRVA-IGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLASAVNKILELYL 325
Query: 385 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKA 444
GRR DD+DHY NKR+ LAG L LFR+ F+ +D+ ++K G+ ++L ++A
Sbjct: 326 GRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSKVRGRRLSLTALVRA 385
Query: 445 KTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKP 504
IT ++++LATGNW G R GVSQ+L+R + S LSHLRR+ S + R +
Sbjct: 386 DIITERIRHALATGNW-----VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEA 440
Query: 505 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISP 564
R LH +QWG MCP ETPEG GLVKNLAL+ ++VG + E G + E++
Sbjct: 441 RDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINESVVERVAYELGVVSVEDVIR 500
Query: 565 AVIPQA---------TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV--VRDIR 613
+ Q +K+++NG +G + D + L K +R RR+ ++ EV V +
Sbjct: 501 RISEQNEDVEKYMSWSKVYLNGRLLGYYEDGKELAKKIRESRRQGKLSDEVNVAYIATDY 560
Query: 614 LKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDT 673
L E+ I D GR RPL IV L+ DI L+ E D DLV +G IE+ID
Sbjct: 561 LNEVHINCDAGRVRRPLIIVNNGTPLVDTEDIKKLKNGEITFD----DLVKQGKIEFIDA 616
Query: 674 EEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733
EEEE ++ L+P++ D +TH EI PS ILG+ ASIIP+P+HNQSPRNT
Sbjct: 617 EEEENAYVA----------LNPQDLTPD-HTHLEIWPSAILGIIASIIPYPEHNQSPRNT 665
Query: 734 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793
YQSAM KQ++G+Y +NYQ R DT A++L+YPQ PLV TR + + + PAG NAI+AI
Sbjct: 666 YQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRMLGVIGYNDRPAGANAILAIM 725
Query: 794 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG 853
Y+GYN EDS+IMN+SSI+RG +RS FFR Y EE K ++ P+ + G +
Sbjct: 726 SYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYPGGQEDKIVTPE-AGVKGYKGK 784
Query: 854 SYDK-LDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASRYTRRDHSISLRHSETGM 911
Y + L+D+G+ P V G DV+IGK +P E + + +RD SI RH E G+
Sbjct: 785 DYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTRHGENGI 844
Query: 912 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
VD VL+T +G + VKVRVR +RIP+IGDKF++RHGQKG VG+ Q DMP+T +GI P
Sbjct: 845 VDLVLITETLEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVVGILIDQVDMPYTAKGIVP 904
Query: 972 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-TVDNISKALHKCGYQMR 1030
DII+NPHA+PSRMTIGQ++E I GK AA GK DATPF + + + K + K G+
Sbjct: 905 DIILNPHALPSRMTIGQIMEAIGGKYAALSGKPVDATPFLETPKLQEMQKEILKLGHLPD 964
Query: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
E +Y+G TG++L + I G YYQ+L HMV DK+H+R RGPVQILTRQP EGR+R+GG
Sbjct: 965 STEVVYDGRTGQKLKSRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAREGG 1024
Query: 1091 LRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNK 1150
LRFGEMERDC+I G + +K+RL D SD V++C+ CG + + KN + C +K
Sbjct: 1025 LRFGEMERDCLIGFGTAMLIKDRLLDNSDKAVVYICDQCGYVGWYDRSKNRYVCPVHGDK 1084
Query: 1151 TDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1182
+ + V + YA KLL QELM+M I+PR++ E
Sbjct: 1085 SVLHPVTVSYAFKLLIQELMSMVISPRLILGE 1116
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/1177 (41%), Positives = 713/1177 (60%), Gaps = 90/1177 (7%)
Query: 22 EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQS 81
++T +D W V+ AY++EKGLVRQ LDS++ FI + MQE++DE G +
Sbjct: 10 DVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFG------------GVKP 57
Query: 82 DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
D + +++ FG++ L +P E+ G+ L+P AR+RNLTYSAP+Y+++ V
Sbjct: 58 DIPD--FEVKFGKVRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVV----- 110
Query: 142 DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
+G +Q+ +V IG++PIML+S C LY S+++L +LGE P D GGYFI+NGSE+V
Sbjct: 111 NGV----SQEAVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIVNGSERV 166
Query: 202 LIAQEKMSTNHVYVFKKRQPNK-----YAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKG 256
+++ E ++ N V + + N+ ++Y R++ + R ++V+
Sbjct: 167 IVSIEDLAPNKTLVERDERQNRIIAKCFSYRHGYRALITVERRKDGILYVK--------- 217
Query: 257 GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAF 316
LP + + + V RALG ++D++I+E + D ++ +L +LE+A
Sbjct: 218 ----------LPNVPRPVKFVYVMRALGLLSDREIVEAVS---DDPRIQHVLFDNLEDAS 264
Query: 317 VIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYII 376
+ Q+ ALDYIGK + G ++ R++ A+ I+ +LPH+G + KAYY G +
Sbjct: 265 DVTTQEEALDYIGKL-SLPGQPKEYRLRRAQNIIDNNLLPHMGVEEKDRKAKAYYLGMMA 323
Query: 377 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKD- 435
R+L +LG R EDD+DHY NKRL LAG LL LFR+ F +L +D++ + K +
Sbjct: 324 LRVLELSLGLRGEDDKDHYANKRLKLAGDLLMDLFRVAFGQLVKDMQYQMTKTYQRKGER 383
Query: 436 ---VNLQ----FAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 488
N+Q +I+ ++ ++++LATG+W G R GVSQ+L+R Y STLSHL
Sbjct: 384 YTFENIQRFVRNSIRPDVLSERIEHALATGSW-----PGGRTGVSQLLDRTNYISTLSHL 438
Query: 489 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 548
RR+ SP+ RE + R LH + WG +CP ETPEG CGLVKNLALM IT G +
Sbjct: 439 RRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGVPEEEVR 498
Query: 549 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVN--TEV 606
E+LE G EE P P ++++NG VG D E V +R RR ++ V
Sbjct: 499 EYLERLGVVPIEERRPN--PDLWRLYLNGVLVGTVEDGEGFVNRIRTDRRSGKISDIINV 556
Query: 607 GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKG 666
+ +D +KE+ + +D GR RPL IVE R + + + A++ W DLV G
Sbjct: 557 ALYQDEDVKEIYVNSDDGRVRRPLIIVENGRPKLTREHVEAIKNGSLT----WSDLVKMG 612
Query: 667 FIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDH 726
IEY+D EEEE +++ P E + +TH E+ P+ ILG+ AS++P+P+H
Sbjct: 613 VIEYLDAEEEENALVAT----------WPWEV-TEEHTHLELMPAAILGIPASLVPYPEH 661
Query: 727 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 786
N PRNTY + M KQ++G+ N++ R+DT ++++YPQ PLV +R M+ + F + PAG
Sbjct: 662 NARPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQ 721
Query: 787 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRS- 845
N +VA+ Y+GYN ED++IMN++SI+RG RS FFR+Y EEK+ + F PD +
Sbjct: 722 NFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRFEIPDPTI 781
Query: 846 -NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP---ISQDEAQGQASRYTRRDHS 901
+G R+ Y LD+DG+ P ++V+G+DV++G+T+P + + G RR+ S
Sbjct: 782 QGYLGERY--YRHLDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGLGGIILQERRETS 839
Query: 902 ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 961
+++R SETG+VD+V++T DG + VKV R +RIP+ GDKF+SRHGQKG +G+ QED
Sbjct: 840 LTVRPSETGVVDKVIITETGDGTKLVKVTTRDLRIPEFGDKFASRHGQKGVIGLIVPQED 899
Query: 962 MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA 1021
MPWT GI PD+IVNPH IPSRMT+GQLIE I GKVA+ G+ D T F + + K
Sbjct: 900 MPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRKE 959
Query: 1022 LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 1081
L + G++ G E MY+G TGRRL A +F+G YYQRL HMV DK+H+R RGPVQ+LT+QP
Sbjct: 960 LEELGFKHSGREVMYDGITGRRLEADVFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQP 1019
Query: 1082 AEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNS 1141
EGR+R+GGLRFGEMERD +I HGA+ L ERL ++SD V VCE+CG IA+ + ++
Sbjct: 1020 TEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRGK 1079
Query: 1142 FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
C C + I +V + YA KLL EL AM I P +
Sbjct: 1080 VYCPVCGEEERISKVEMSYAFKLLLDELKAMGIRPSL 1116
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/1181 (38%), Positives = 660/1181 (55%), Gaps = 81/1181 (6%)
Query: 24 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDF 83
T ED W ++ A+ + KGLV+Q LDS++ F+ D++++ Q N SD
Sbjct: 46 TIEDKWQLLPAFLKVKGLVKQHLDSYNYFV------------DVDLKKIVQANEKVTSD- 92
Query: 84 AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDG 143
E + + + I + P+ T++D A++ P RLR+LTY A +YVD+ G
Sbjct: 93 VEPWFYLKYLDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYT------RG 146
Query: 144 EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLI 203
++V ++ V IG++P+MLRS+ C L +E ++ L ECP D GGYFI+ G+EKV++
Sbjct: 147 KQVVRRRN---VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVIL 203
Query: 204 AQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI 263
QE++S N + V + +P K + A V S + R T + + K S
Sbjct: 204 VQEQLSKNRIIV--EAEPKKGLWQASVTS--STHERKSKTYVITKNGKLYLKHNS----- 254
Query: 264 RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA--FVIQNQ 321
+ +IPI++V +A+G +D++I E + + +L PS+EE I
Sbjct: 255 ------VADDIPIVVVLKAMGLQSDQEIFELVA--GAEASYQDLFAPSIEECAKLNIYTA 306
Query: 322 QVALDYIGKR---GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHR 378
Q AL+YIG R G R + A E+L +L H+ + KA Y G + R
Sbjct: 307 QQALEYIGARVKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARR 366
Query: 379 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK---- 434
+L+ + DDRD+ GNKRL+LAG LL LF LF+K D++ + K +
Sbjct: 367 VLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQE 426
Query: 435 -DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS 493
D Q + + IT G+ +L+TGNW RAGV+ VL+RL+Y S L + R+ S
Sbjct: 427 FDAYNQLTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITS 486
Query: 494 PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEE 553
+ K++ PR L SQ+GM+C ++TPEG+ACGLVKNLALM +IT PI++
Sbjct: 487 QFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYA 546
Query: 554 WGTENFEEISPAVIPQATK--IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRD 611
+G E+ IS + +++NG +GI R P + V + R+LRR ++ +G+ +
Sbjct: 547 FGIEDIHVISGRELHSHGTYLVYLNGAILGISRYPSLFVASFRKLRRSGKISPFIGIFIN 606
Query: 612 IRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYI 671
+ + I TD GR RPL IV+ ++ + I L++ + G+ D + +G +EY+
Sbjct: 607 THQRAVFISTDGGRICRPLIIVQNGLPKVESKHIRLLKEGK----WGFEDFLKQGLVEYV 662
Query: 672 DTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
D EE ++IS+ D+ DT TH EI P ILG A +IP+P HNQSPR
Sbjct: 663 DVNEENDSLISVYERDIT----------PDT-THLEIEPFTILGAVAGLIPYPHHNQSPR 711
Query: 732 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
NTYQ AMGKQA+G N R+DTL Y++ YPQ+P+V T+ +E + + +LPAG NA VA
Sbjct: 712 NTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVA 771
Query: 792 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMR 851
I YSGY+ ED++++N+SSIDRGF R F + +K + G P R G
Sbjct: 772 IMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDRIGDPQRDPETGEV 831
Query: 852 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-------ISQDEAQGQASRYTRRDHSISL 904
+ ++DDGLA G RV + + K TP I+ Q S Y + ++
Sbjct: 832 VWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGY--KATPMTY 889
Query: 905 RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 964
+ E G +D+V+LTT +KV +R R P++GDKFSSRHGQKG G+ QEDMP+
Sbjct: 890 KAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPF 949
Query: 965 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1024
+GI PDII+NPH PSRMT+G++IE + GKV G T F V++ S+ L +
Sbjct: 950 NDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFGGTKVEDASRILVE 1009
Query: 1025 CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1084
GY G + + +G TG L A IF+GP YYQ+LKHMV DK+H+R RGP +LTRQP EG
Sbjct: 1010 HGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEG 1069
Query: 1085 RSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFEC 1144
RSRDGGLR GEMERDC+IA+GAS L ERL SDA V VC CGL+ C
Sbjct: 1070 RSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDACDVDVCGQCGLLGYKGW------C 1123
Query: 1145 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTK 1185
C++ ++V++ IPYA KLLFQEL++M I PR+ +++ K
Sbjct: 1124 NSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRLALEDEFK 1164
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/1234 (37%), Positives = 700/1234 (56%), Gaps = 132/1234 (10%)
Query: 31 VISAYFEEKGLVRQQLDSFDEFI------QNTMQEIVDESADIEIRPESQHNPGQ-QSDF 83
++ AYF++ G+V QLDS + F + MQ+IVDE+ + +PG D
Sbjct: 4 IVDAYFKKYGIVNHQLDSMNSFYATPDNPNSVMQQIVDET-----KVSDDADPGYFVLDP 58
Query: 84 AET---IYKISFGQ------------IYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 128
A+T +I +G+ I++ KP + E+ G + + P ARLR+L Y AP
Sbjct: 59 AKTGGHDIRIYYGRVRENGHYVGEQTIFIGKPEIKEASGASNQITPNEARLRDLNYLAP- 117
Query: 129 YVDVTKRVIKKG-HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNS-----EKD---- 178
V + R+++ G G E+ + +G +P+M+RS CTL + + EK+
Sbjct: 118 -VTLKLRIVEDGIEKGSEI--------IKVGDLPVMVRSKICTLSEENLDQYIEKNNGPI 168
Query: 179 -------LTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 231
L +GE P D GGYFII GSE+V+++ E ++ N + V ++Y EV
Sbjct: 169 GLSRREKLQYVGEDPDDPGGYFIIGGSERVIVSLEDLAPNKIMV---EWEDRYESKVEVS 225
Query: 232 SMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 291
+ + R L TS + G+ G I ++P + +P++I+ +ALG D D+
Sbjct: 226 KVFSQRGG------FRAL--TSMEKGTDGT-INVSIPSVAGTVPLVILMKALGLERDVDV 276
Query: 292 ---------LEHICY-DFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDK 341
+E I Y + +D++ ++L P+ + + A+ Y+ KR A G ++
Sbjct: 277 HDAIASVPEMEPIIYSNIEDSKNPKVLPPN-----GVNTTEDAISYLEKRFAA-GQAKEF 330
Query: 342 RIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 401
R K ++L +LPH+G +KA Y G + LL +LG R EDD+DH NKR+
Sbjct: 331 RDKKISQMLDHSLLPHLGDSPSDRIRKAIYLGRMARSLLELSLGIRKEDDKDHLANKRIK 390
Query: 402 LAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 461
LAG L+ LFR F+ + +D++ ++K + + + ++ A++ +T + ++++TGNW
Sbjct: 391 LAGDLMDELFRSAFQSVMKDLKYQLEKTYNRKRGIKIRPAVRQDLLTQRVLHAMSTGNW- 449
Query: 462 QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 521
G R GVSQ+L+R++ ST+SHLRR+ SP+ R + R LH +QWG +CP ETP
Sbjct: 450 ----IGGRTGVSQLLDRVSNLSTISHLRRIISPLTRTQPHFEARDLHPTQWGRICPNETP 505
Query: 522 EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVG 581
EGQ CGLVKN AL++ +T G ++E L+ E SP + ++++NG ++G
Sbjct: 506 EGQNCGLVKNAALLINVTQGIDPDSVMEILKGMDVREVLEESP----KKGRVYLNGDFIG 561
Query: 582 IHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK 641
H DP LV +R RR ++ EV V D E+ + +D GR RPL I++ + ++
Sbjct: 562 YHDDPRYLVSRIREERRSGRMSDEVNVRYDDNTNEVIVNSDRGRLRRPLLILKDGKTVLD 621
Query: 642 KRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA---------- 691
+ I L+ E + DLV +G IE++D EEEE T +++ D+ +
Sbjct: 622 RTMIERLKHGEI----SFEDLVKQGAIEWLDAEEEEDTYVAVYAYDIPEKCPHCNSYLYR 677
Query: 692 ----------------------RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQS 729
R + + TH EI P++ILGV ASIIP+P+HN S
Sbjct: 678 SMVDWVNPGESEITLECGFCHQRFNVPSKLSKENTHLEIDPAMILGVVASIIPYPEHNSS 737
Query: 730 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 789
PR T SAM KQ++G +N + R DT ++L+YPQ PLV TR M+++H+ + PAG N +
Sbjct: 738 PRITIASAMAKQSLGFAQSNVRIRPDTRGHLLHYPQVPLVRTRVMDYIHYDRRPAGQNFV 797
Query: 790 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 849
VA+ Y GYN +D++++N+++I+RG RS FFR+Y EE++ ++ F P + +G
Sbjct: 798 VAVLSYEGYNIQDALVINKAAIERGLGRSTFFRTYSAEERRYPGGQEDKFEIPTH-DIIG 856
Query: 850 MRHGSYDK-LDDDGLAPPGTRVSGEDVIIGKTTPIS-QDEAQGQASRYTRRDHSISLRHS 907
R Y K LDD G+ P V G DV+IGKT+P +E + + RR+ S+++R +
Sbjct: 857 ARAEEYYKNLDDSGIIFPEAYVEGSDVLIGKTSPPRFLEEGEERLGPQRRRESSVTMRPN 916
Query: 908 ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 967
E+G VD V LT + R VK++VRS RIP++GDKF+SRHGQKG VG+ QEDMP+T +
Sbjct: 917 ESGYVDNVFLTVSESNSRVVKIKVRSERIPELGDKFASRHGQKGVVGLVVPQEDMPFTED 976
Query: 968 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1027
GI PD+I NPH+IPSRMT+G ++E I GK+A+ G+ D T F+ ++ AL K G+
Sbjct: 977 GIIPDLIFNPHSIPSRMTVGHILEMIGGKIASRTGRFIDGTIFSGEPEKSLRDALVKYGF 1036
Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1087
+ E MY+G TGRR A IF+G YYQ+L HMV K H+R RGPVQILTRQP EGRSR
Sbjct: 1037 RKSSTEVMYDGITGRRFKADIFVGVIYYQKLHHMVAGKFHARSRGPVQILTRQPTEGRSR 1096
Query: 1088 DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH--CGLIAIANLKKNSFECR 1145
GGLRFGEMERD +IAHGA+ +K+RL DQSD ++VC + CG IAI + +K + C
Sbjct: 1097 QGGLRFGEMERDTLIAHGAAMVIKDRLLDQSDGTVLYVCGNPSCGHIAIYDRRKGTLRCP 1156
Query: 1146 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRML 1179
C N +I + YA KL+ EL+++ + R++
Sbjct: 1157 VCGNTGNIYPIETSYAFKLMRDELISLGVVMRLM 1190
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/1190 (38%), Positives = 672/1190 (56%), Gaps = 120/1190 (10%)
Query: 24 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDF 83
T E+ W ++ A+ + KGLV+Q +DSF+ FI ++EI+ + N SD
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFI------------NVEIKKIMKANEKVTSD- 68
Query: 84 AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIK 138
A+ ++ + + IY+ P + ES T + P RLR++TYSAP+ VD+ ++R+I+
Sbjct: 69 ADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIR 128
Query: 139 KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
+ IG++PIMLRSS C L + + +L ECP D GGYFI+ G
Sbjct: 129 NA--------------LPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGV 174
Query: 199 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
EKV++ QE++S N + V R K A A V S + SRT+
Sbjct: 175 EKVILIQEQLSKNRIIVEADR---KGAVGASVTSSTHEKK-----------SRTNMAVKQ 220
Query: 259 SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
Y+R + +IPI+I+F+A+G +D++I++ I + +M PSLEE
Sbjct: 221 GRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKA 275
Query: 319 Q--NQQVALDYIG----KRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 372
Q Q AL YIG ++ G + +I+ A+E+L +L HV +F K Y
Sbjct: 276 QIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYT 335
Query: 373 GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 432
++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++ + +
Sbjct: 336 AVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK 394
Query: 433 GKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 490
+ ++ IT+G+ +++TGNW R GV+QVL+RL+Y S L + R
Sbjct: 395 QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTR 454
Query: 491 LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 550
++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++
Sbjct: 455 ISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKL 514
Query: 551 LEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
G E+ EE+S P +F+NG +G+ RD + LV T R +RR +N
Sbjct: 515 ASNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEF 571
Query: 606 VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAK 665
V + ++ + + I +D GR RP IV+KQ+ + + + L Q + D + +
Sbjct: 572 VSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYR----NFEDFLHE 627
Query: 666 GFIEYIDTEEEETTMISM---TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
+EY+D EE I++ TIN DT TH EI P +LGVCA +IP
Sbjct: 628 SLVEYLDVNEENDCNIALYEHTINK-------------DT-THLEIEPFTLLGVCAGLIP 673
Query: 723 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E + F +L
Sbjct: 674 YPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKL 733
Query: 783 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS-------YRDE--EKKMGT 833
PAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ Y ++ +K MG
Sbjct: 734 PAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGP 793
Query: 834 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG-- 890
++ +P RH + LD DG+ PG +V + V++ K+ P ++Q +G
Sbjct: 794 MLDAATRKPI------WRH---EILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSN 844
Query: 891 --QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
Q +Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHG
Sbjct: 845 VPQQPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHG 902
Query: 949 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
QKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T
Sbjct: 903 QKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGT 962
Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
F V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+
Sbjct: 963 AFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHA 1022
Query: 1069 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 1128
R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC
Sbjct: 1023 RARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQ 1082
Query: 1129 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
CGL+ + C CK+ + + IPYACKLLFQEL +M I PR+
Sbjct: 1083 CGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/1190 (38%), Positives = 672/1190 (56%), Gaps = 120/1190 (10%)
Query: 24 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDF 83
T E+ W ++ A+ + KGLV+Q +DSF+ FI ++EI+ + N SD
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFI------------NVEIKKIMKANEKVTSD- 68
Query: 84 AETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV-----TKRVIK 138
A+ ++ + + IY+ P + ES T + P RLR++TYSAP+ VD+ ++R+I+
Sbjct: 69 ADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIR 128
Query: 139 KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
+ IG++PIMLRSS C L + + +L ECP D GGYFI+ G
Sbjct: 129 NA--------------LPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGV 174
Query: 199 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
EKV++ QE++S N + V R K A A V S + SRT+
Sbjct: 175 EKVILIQEQLSKNRIIVEADR---KGAVGASVTSSTHEKK-----------SRTNMAVKQ 220
Query: 259 SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
Y+R + +IPI+I+F+A+G +D++I++ I + +M PSLEE
Sbjct: 221 GRFYLRHNT--LSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKA 275
Query: 319 Q--NQQVALDYIG----KRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 372
Q Q AL YIG ++ G + +I+ A+E+L +L HV +F K Y
Sbjct: 276 QIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYT 335
Query: 373 GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 432
++ R++L A G DDRD+YGNKRL+LAG LL LF LF+K +++ + +
Sbjct: 336 AVMVRRVIL-AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK 394
Query: 433 GKDVNLQFA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 490
+ ++ IT+G+ +++TGNW R GV+QVL+RL+Y S L + R
Sbjct: 395 QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTR 454
Query: 491 LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 550
++S + K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++
Sbjct: 455 ISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKL 514
Query: 551 LEEWGTENF-----EEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTE 605
G E+ EE+S P +F+NG +G+ RD + LV T R +RR +N
Sbjct: 515 AGNLGVEDVNLLCGEELS---YPNVFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEF 571
Query: 606 VGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAK 665
V + ++ + + I +D GR RP IV+KQ+ + + + L Q + D + +
Sbjct: 572 VSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYR----NFEDFLHE 627
Query: 666 GFIEYIDTEEEETTMISM---TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIP 722
+EY+D EE I++ TIN DT TH EI P +LGVCA +IP
Sbjct: 628 SLVEYLDVNEENDCNIALYEHTINK-------------DT-THLEIEPFTLLGVCAGLIP 673
Query: 723 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 782
+P HNQSPRNTYQ AMGKQAMG N + R+DTL Y+L YPQKP+V T+ +E + F +L
Sbjct: 674 YPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKL 733
Query: 783 PAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS-------YRDE--EKKMGT 833
PAG NA VA+ YSGY+ ED++++N++S+DRGF R L +++ Y ++ +K MG
Sbjct: 734 PAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGP 793
Query: 834 LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP-ISQDEAQG-- 890
++ +P RH + LD DG+ PG +V + V++ K+ P ++Q +G
Sbjct: 794 MLDAATRKPI------WRH---EILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSN 844
Query: 891 --QASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
Q +Y +D I+ + + +++V++++NA+ +K+ +R R P+IGDKFSSRHG
Sbjct: 845 VPQQPQY--KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHG 902
Query: 949 QKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1008
QKG G+ QEDMP+ GI PDII+NPH PSRMT+G+LIE + GK G+ T
Sbjct: 903 QKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGT 962
Query: 1009 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHS 1068
F V ++ + L + GY G + + +G TG L A I+ GP YYQ+LKHMV DK+H+
Sbjct: 963 AFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHA 1022
Query: 1069 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEH 1128
R RGP +LTRQP EGRSRDGGLR GEMERDC+I +GAS L ERL SDA+ V VC
Sbjct: 1023 RARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQ 1082
Query: 1129 CGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
CGL+ + C CK+ + + IPYACKLLFQEL +M I PR+
Sbjct: 1083 CGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/1166 (36%), Positives = 656/1166 (56%), Gaps = 78/1166 (6%)
Query: 27 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAET 86
+ W ++ A+ + KGLV+Q +DSF+ FI +++IV + + + A+
Sbjct: 33 EKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELV-------------TSGADP 79
Query: 87 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 146
++ + + + + KP + + T P RLR+ TYSAP+ VD+ E
Sbjct: 80 LFYLKYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDI-----------EYT 128
Query: 147 TETQDFTK--VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 204
TQ + + IG++P+MLR S C L SE +L++L ECP D GGYF++ G EKV++
Sbjct: 129 RGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILI 188
Query: 205 QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 264
QE++S N K + V + + + + + T+ + + K S
Sbjct: 189 QEQLSWN------KMLTEDFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNS------ 236
Query: 265 ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVIQ--NQQ 322
+ +IPI+++F+ALG V+D++I I D ++ SL +A+ ++ QQ
Sbjct: 237 -----MTDDIPIVVIFKALGVVSDQEIQSLIGID---SKSQNRFGASLIDAYNLKVFTQQ 288
Query: 323 VALDYIGKRGATV---GVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
AL+Y+G + T + A+E+L +L HV +F KA Y ++ R+
Sbjct: 289 RALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRV 348
Query: 380 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ 439
+ L + DDRD+YGNKRL+LAG LL +F LF+++ +++ K + K
Sbjct: 349 MAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFD 408
Query: 440 FA--IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497
++A IT+GL+ ++++GNW RAGV+QVL+RL+Y S L + R+NS +
Sbjct: 409 VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEK 468
Query: 498 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557
K++ PR L SQWGM+CP++TPEG+ACGLVKNLALM +IT P++ G E
Sbjct: 469 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVE 528
Query: 558 NFEEIS--PAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615
+ E+S P P +F+NG +G+ + + LV+ LR +RR+ + + V V +
Sbjct: 529 DIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQR 588
Query: 616 ELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEE 675
+ I+TD GR RP IVE +R L+K+ + L + D D + G IEY+D E
Sbjct: 589 CIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFD----DFLLDGLIEYLDVNE 644
Query: 676 EETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735
E + I+ E+ D TH EI P +LGVCA ++P+P HNQSPRNTYQ
Sbjct: 645 ENDSFIAWN-----------EDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQ 693
Query: 736 SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795
AMGKQAMG+ N + R+D+L Y L YP P+V ++ +E +F +LPAG NA VA+ Y
Sbjct: 694 CAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSY 753
Query: 796 SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSY 855
SGY+ ED++I+N++SIDRG+ R L +++ + K+ + P + +
Sbjct: 754 SGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKH 813
Query: 856 DKLDDDGLAPPGTRVSGEDVIIGKTTP--ISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
D LD DG+ PG +V + ++I K P S + QGQ+++ IS + E ++
Sbjct: 814 DVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIE 873
Query: 914 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973
+V+++ NA+ +K+ +R RIP+IGDKFSSRHGQKG G+ QEDMP+ GI PD+
Sbjct: 874 RVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDM 933
Query: 974 IVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFE 1033
I+NPH PSRMT+G+ +E + GK GK T F V++I L + G+ G +
Sbjct: 934 IMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAELERHGFNYVGKD 993
Query: 1034 TMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 1093
Y+G TG L A I+ GP YYQ+LKHMV DK+H+R RGP +LTRQP +GRSR+GGLR
Sbjct: 994 FFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRL 1053
Query: 1094 GEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDI 1153
GEMERDC+I++GAS + ERL SDA+ V VC CG +A + C C++ ++
Sbjct: 1054 GEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSW------CHFCQSSANV 1107
Query: 1154 VQVHIPYACKLLFQELMAMAIAPRML 1179
++ +PYACKLLFQEL +M + P+M+
Sbjct: 1108 SKISMPYACKLLFQELTSMNVVPKMI 1133
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/1226 (38%), Positives = 685/1226 (55%), Gaps = 101/1226 (8%)
Query: 15 EEEDEEEEITQEDAWAVISAYFEE--KGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
E ED QE +A++ +FE+ + LV+ +DSF++FI+ + I+ + D I +
Sbjct: 7 EIEDVNNTYDQEAHFALLDLFFEKDKQVLVKHHIDSFNQFIEEIIPNIL-QGGDNVISEK 65
Query: 73 SQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
+ N + Y+++F + + P + + E L+P A + ++YSA V
Sbjct: 66 ATENKIIR-------YRLTFNDLGIKPPTL---ENEENLLYPLDAIRKQISYSAKYTATV 115
Query: 133 TKRVIKKGHDGEEVTETQDF----TKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 188
T+ D ++ TET+ V I K+PIM+ S YC L + C YD
Sbjct: 116 TQWQDIVDIDTKK-TETRIIGSPEKDVPIAKIPIMVLSKYCNLTLRPD---IAGKHCKYD 171
Query: 189 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 248
GGYFI+NGSEKV+++ E M VF +R N Y V+S+ SQ +F
Sbjct: 172 AGGYFIVNGSEKVVLSVESMIPRKPVVFTQRDQNSLLYYVRVQSIPASQFVGNPQLFTVK 231
Query: 249 LSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELL 308
+ R ++ I ++P+ + E+ I RALG D+DI++ I ++ ++ LL
Sbjct: 232 MKRDNS--------IILSIPHFK-EVSIFTFIRALGIETDEDIVDSILDVKKEKDLLNLL 282
Query: 309 R--------PSL--EEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHV 358
PS+ EEA I Q+ V ++R +Y +I+ + +LPH+
Sbjct: 283 SICMNSSNTPSVTKEEALEIMANQIKSTKTFT-DTNPEVKAEQRRRYLDKIMTQFVLPHI 341
Query: 359 --GTGD--FCETKKAYYFGYIIHRLLLCAL--GRRAE-----DDRDHYGNKRLDLAGPLL 407
GTGD + KA+Y Y+IH+LL C L R E DDRD NKR+DL G LL
Sbjct: 342 TSGTGDPEIDKIYKAHYICYMIHKLLKCYLRGAREVEEYRGCDDRDSMVNKRIDLTGRLL 401
Query: 408 GGLFRMLFRKLTRDV-RAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAA 466
GGLF+ + K+ D + + K +D+ K N+ IK +I GL+ +L+TGN+G +
Sbjct: 402 GGLFKQFYDKMLNDCNKIFRTKNIDDKKPPNIIPHIKPNSIEQGLRQALSTGNFG----S 457
Query: 467 GTRAGVSQVLNRLTYASTLSHLRRLNSPI--GREGKLAKPRQLHNSQWGMMCPAETPEGQ 524
+R G+SQ+LNR+ + +LS++RR+ +P K+ PR LHN+Q+G MCP E+PEG+
Sbjct: 458 QSRKGLSQMLNRMNHLHSLSYMRRVITPTVDASTMKMTSPRHLHNTQYGSMCPLESPEGK 517
Query: 525 A-CGLVKNLALMVYITVG-SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI 582
GLVKN+A+M IT+ ++ PI+E E + + Q K+F+NG W+G+
Sbjct: 518 PKTGLVKNMAMMEGITINMNSQIPIIESYLIGKITTLESANKKRLHQYVKVFLNGNWLGV 577
Query: 583 HRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK 642
R+ + LR +R R +++ VG+V + + E IYTD GR RP V +L K
Sbjct: 578 TRNIIKIHNDLRAMRFRGELSRMVGLVLNYKTAEFHIYTDGGRLIRPYLTVTDNKLNFKP 637
Query: 643 RDIIALQQRESPEDGGWHDLVAK--GFIEYIDTEEEETTMISM----------------- 683
+ E W + +AK IEY+D EEE+ M+++
Sbjct: 638 EML--------DEVNSWEEFLAKFPEVIEYVDKEEEQNIMLAVFPQYIQDANRIMSKKPI 689
Query: 684 ----TINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
+N + + + + Y YTHCEIHP +ILG+ +S IPFPDHNQSPR +Q
Sbjct: 690 NSRDQLNKINRTNRYDDNVYV-RYTHCEIHPCMILGLISSNIPFPDHNQSPRGIFQYNQA 748
Query: 740 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY- 798
+QAMG+Y+++Y+ R D ++Y+LY+PQ PLVT+RA ++ PAG N+IVAIA Y+G
Sbjct: 749 RQAMGLYISDYRERTD-ISYILYHPQIPLVTSRASKYTGTHIFPAGENSIVAIASYTGLM 807
Query: 799 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKED-FGRPDRSNTMGMRHGSYDK 857
NQEDS+++N S+I +G+ R+ + Y + KK + F +PDR+ +R +YDK
Sbjct: 808 NQEDSLVINDSAIQKGYMRAQALKKYMEIIKKNPASSQTSIFMKPDRNKVDNLRDANYDK 867
Query: 858 LDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLL 917
L ++G A T + DV+IG P + A+ +Y +D S + G VD+V+
Sbjct: 868 LSEEGYAKVETVIRDGDVVIGVVNP--KPTAREDEKQY--KDASSIYKSLIPGAVDKVIT 923
Query: 918 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
N DG +K+R+RS RIP +GDKFSSR GQKGT+G + DM ++ G+ PDII+NP
Sbjct: 924 EVNNDGYPIIKMRIRSERIPNVGDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPDIIINP 983
Query: 978 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1037
+ +P RMTIGQLIEC++GK+ A G GDATPFT V ++ I+ L GY+ G ETMYN
Sbjct: 984 NCMPKRMTIGQLIECLLGKLCAVKGVYGDATPFTSVDLNAINDELVAAGYEEWGNETMYN 1043
Query: 1038 GHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG-EM 1096
G G++L IF+GPTYYQRLK MV DK HSR RGP Q+LTRQ EGRSRDGGLR G EM
Sbjct: 1044 GMNGKKLPVKIFIGPTYYQRLKQMVGDKAHSRARGPTQLLTRQAPEGRSRDGGLRIGFEM 1103
Query: 1097 ERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQV 1156
ERD + AHG + FLKE+ D SD Y HVC+ CG A +K + C GC+N T I ++
Sbjct: 1104 ERDALCAHGVAQFLKEKTVDNSDIYTCHVCDSCGQFAHKVPEKKYYTCTGCRNTTSISKI 1163
Query: 1157 HIPYACKLLFQELMAMAIAPRMLTKE 1182
IPYA KLL QEL ++ I ++ T +
Sbjct: 1164 VIPYAFKLLLQELASINILGKIRTSK 1189
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2
Length = 1149
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/1169 (37%), Positives = 643/1169 (55%), Gaps = 81/1169 (6%)
Query: 24 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI--EIRPESQHNPGQQS 81
T +D W ++ A+ + KGLV+Q LDSF+ F+ +++I+ + I ++ PE
Sbjct: 40 TAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPE--------- 90
Query: 82 DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 141
+ + + I + K + S + P RLR++TYSAP+YVD+ +
Sbjct: 91 ------FYLKYVDIRVGKK--SSSSTKDYLTPPHECRLRDMTYSAPIYVDI------EYT 136
Query: 142 DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
G + +D V IG++PIMLRS+ C LY E + +L ECP D GGYFI+NG+EKV
Sbjct: 137 RGRNIIMHKD---VEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKV 193
Query: 202 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 261
++ QE++S N + V + ++ + + + + R T + + K S
Sbjct: 194 ILVQEQLSKNRIIV----EADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNS--- 246
Query: 262 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA--FVIQ 319
I EIPI IV +A G ++D +I++ +C + D+ ++ +LEE+ I
Sbjct: 247 --------IAEEIPIAIVLKACGILSDLEIMQLVCGN--DSSYQDIFAVNLEESSKLDIY 296
Query: 320 NQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRL 379
QQ AL+YIG + T+ + ++ E + ++ H+ +KA Y + R+
Sbjct: 297 TQQQALEYIGAKVKTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRV 356
Query: 380 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK----- 434
++ + DDRD+ GNKRL+LAG L+ LF LF+K D + + K +
Sbjct: 357 VMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEY 416
Query: 435 DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSP 494
D L + + ITSGL +++TGNW RAGV+ VL+RL+Y S L + R++S
Sbjct: 417 DALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQ 476
Query: 495 IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 554
+ K++ PR L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI +
Sbjct: 477 FEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVL 536
Query: 555 GTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRL 614
G E+ I A + +++NG +G R P V R LRR V+ + + +
Sbjct: 537 GVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQ 596
Query: 615 KELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTE 674
+ I TD GR RPL IV + +K + L E D D + G +EY+D
Sbjct: 597 MAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFD----DFLKLGLVEYLDVN 652
Query: 675 EEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 734
EE + I++ D+V + TH EI P ILG A +IP+P HNQSPRNTY
Sbjct: 653 EENDSYIALYEKDIVP-----------SMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTY 701
Query: 735 QSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 794
Q AMGKQA+G N R+DTL Y++ YPQ+P+V T+ +E + + +LPAG NA VA+
Sbjct: 702 QCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMS 761
Query: 795 YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG--RPDRSNTMGMRH 852
YSGY+ ED++++N+SSIDRGF R R K+ ++ G R D + +H
Sbjct: 762 YSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQH 821
Query: 853 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTR---RDHSISLRHSET 909
S L DGL G +V + I K+ P + +A + + R+ + R E
Sbjct: 822 QS---LGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEP 878
Query: 910 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
+DQV+++ + + +KV +R R P++GDKFSSRHGQKG G+ QEDMP+ +GI
Sbjct: 879 SHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGI 938
Query: 970 TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQM 1029
PDII+NPH PSRMT+G++IE I GK G T F ++++SK L G+
Sbjct: 939 VPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDQGFNY 998
Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 1089
G + +Y+G TG L A IF GP YYQ+LKHMV DK+H+R RGP +LTRQP EGRSRDG
Sbjct: 999 SGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDG 1058
Query: 1090 GLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKN 1149
GLR GEMERDC+IA+GAS L ERL SDA+ V VC+ CGL+ + C CK+
Sbjct: 1059 GLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW------CTTCKS 1112
Query: 1150 KTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
+I+++ IPYA KLLFQEL++M IAPR+
Sbjct: 1113 AENIIKMTIPYAAKLLFQELLSMNIAPRL 1141
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/1196 (35%), Positives = 630/1196 (52%), Gaps = 112/1196 (9%)
Query: 33 SAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISF 92
+++F++ GL+ QL+S++ FI++ +Q + ++ + P + +D+ K F
Sbjct: 40 TSFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVK--F 97
Query: 93 GQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK----------GHD 142
G++ + KP D E L P ARL+N+TYSA + V+V V K G D
Sbjct: 98 GEVTVEKPTFFSDDKELEFL-PWHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQD 156
Query: 143 GEEVTETQDFTK--VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200
+ D K + IG +P+M++S C + +++ + G+C +DQGGYF+I G+EK
Sbjct: 157 NYVEKKILDVKKQDILIGSIPVMVKSILCKTSEKGKENCKK-GDCAFDQGGYFVIKGAEK 215
Query: 201 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260
V IAQE+M T +++ P ++ +E +NR F+ LS
Sbjct: 216 VFIAQEQMCTKRLWI--SNSPWTVSFRSE-----NKRNR-----FIVRLSENEKAEDYKR 263
Query: 261 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLE------E 314
+ T+ ++ TEIP+ ++F ALG +DK+ ++ I +D D + L S+ E
Sbjct: 264 REKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCE 323
Query: 315 AFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGY 374
AF N AL Y+ ++ + T+ + E L + P + + KKA + GY
Sbjct: 324 AFRCGNN--ALTYVEQQ---IKSTKFPPAESVDECLHLYLFPGLQS----LKKKARFLGY 374
Query: 375 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
++ LL G+R ++RD + NKR++LAG LL R+ R + +QK +
Sbjct: 375 MVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSGDG 434
Query: 435 DVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLN 492
D+ ++ + A IT+GL + +TG W R +GV L R TL LRR
Sbjct: 435 DLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTR 494
Query: 493 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
+ GK+ R H S WG +C TP+G+ CGLVKN++L+ ++ S ++E L
Sbjct: 495 QQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLE-SVVEKLF 553
Query: 553 EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
G E + + + K+ +NG WVG+ D E V L+ RR+ ++ E+ + RD
Sbjct: 554 ACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDK 613
Query: 613 RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYID 672
E+RI+TD GR RPL +VE + L ++E P + L+ G +E I
Sbjct: 614 DDNEVRIFTDAGRLLRPLLVVENLQKL----------KQEKPSQYPFDHLLDHGILELIG 663
Query: 673 TEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
EEEE + I L++ YTHCE+ S +LGV +++PF +H+ R
Sbjct: 664 IEEEEDCNTAWGIKQLLKE--------PKIYTHCELDLSFLLGVSCAVVPFANHDHGRRV 715
Query: 733 TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
YQS +QA+G TN R DTL+ L+YPQKPL T A E L L G NAIVA
Sbjct: 716 LYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVA 775
Query: 792 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE--------EKKMGTLVKEDFGRPD 843
+ + GYNQEDS++MN++S++RG FRS RSY+ E KKM LV+ FG+
Sbjct: 776 VNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQ--FGKTH 833
Query: 844 RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSIS 903
+ G D L+DDG G +S D++IG+ T + DHSI
Sbjct: 834 S------KIGKVDSLEDDGFPFIGANMSTGDIVIGRCTE-------------SGADHSIK 874
Query: 904 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
L+H+E G+V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G Q++ P
Sbjct: 875 LKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFP 934
Query: 964 WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK-VAAHMGKEGD----------ATPFTD 1012
+T++GI PDI++NPHA PSR T GQL+E + K +A + KEG ATPF+
Sbjct: 935 FTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFST 994
Query: 1013 VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 1072
V I++ LH+ G+ G E +YNG +G + +MIF+GPT+YQRL HM +DK+ R G
Sbjct: 995 PGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTG 1054
Query: 1073 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 1132
PV LTRQP R R GG++FGEMERDC+IAHGAS L ERLF SD+ ++H+C C
Sbjct: 1055 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTY 1114
Query: 1133 A-------IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
A + K CR C + +V+V++PY KLL QEL +M I TK
Sbjct: 1115 ANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGITLNFDTK 1170
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3 SV=1
Length = 1193
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/1226 (34%), Positives = 647/1226 (52%), Gaps = 133/1226 (10%)
Query: 21 EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 80
+E+++E+ ++ YF+ GLV+ QL++FD FI + ++ I+D+ A I + + +
Sbjct: 18 KEVSEENRLMLLKDYFQTSGLVKHQLETFDHFIFHDIKTIIDDEASIIFNGKRSLSSQIK 77
Query: 81 SDFAETIYK--------ISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
+ E Y + F ++++KP +T D L+P AR + +TY + ++VDV
Sbjct: 78 NGAVEEGYNRKESEKIMLKFENVFVAKPTITNDDTTVRPLYPAEARQKMITYDSFVFVDV 137
Query: 133 TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 192
+ V++ D EE+ + +V I K+PIMLRSS C LY + ++ ELGE D GGY
Sbjct: 138 LEYVLR---DEEEILVNKHL-RVQIAKIPIMLRSSTCNLYNCTPQERIELGEGIEDPGGY 193
Query: 193 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA--YVAEVRSMAESQ----------NRP 240
FIING+E+VLI Q + + N F+ NK++ ++RSM+E N
Sbjct: 194 FIINGNERVLIGQLRNAYNRSICFR----NKFSEPLTCDMRSMSEETGHSVLIQLRLNDS 249
Query: 241 PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ 300
P + R L + G I + +T IPI VFR L VA D L+ + D +
Sbjct: 250 PISQ-KRNLKKLDKNGT-----IDLIISQTKTPIPISFVFRVLK-VATIDKLKFLIGDEE 302
Query: 301 --DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHV 358
D +++++ + + + + ++ + + +K K + ++++M PH+
Sbjct: 303 ELDKYLIKIVEET-SDGGIFDDMEIEISQEDDFNEENEESTEK--KKITQFIEQDMFPHL 359
Query: 359 GTGDFCETKKAYYFGYIIHRLLLC--------ALGRRAED----------------DRDH 394
G E +KA G ++ +LLL +RA D DRD+
Sbjct: 360 GVSSTHE-EKAILLGKMVRKLLLVNETSINANKFAQRANDETNKTNKTNKMYYTQEDRDN 418
Query: 395 YGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYS 454
Y NKR++ AG L LFRML+++ + ++K V + K IT+GL +S
Sbjct: 419 YSNKRVETAGVLCFELFRMLYKRFIKSNINQLEK----RNRVEMDVISKNAFITTGLHFS 474
Query: 455 LATGNWGQANAAGTRAGVSQV-LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWG 513
+TGNWG R GV+Q+ N++++ + S+LRR P+G+EGK K RQ+H S
Sbjct: 475 FSTGNWGVQKNNYIRTGVAQIPQNKVSFGAFFSYLRRFVIPMGKEGKNTKIRQIHPSSIF 534
Query: 514 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE--EWGTENFEEIS----PAVI 567
CP+ETPEGQ G+ N +++ +++ +++ I E +E ++ EIS +
Sbjct: 535 FACPSETPEGQFVGITLNFSMLAEVSIRTSSVVIKEIIEASHQAFKHVHEISLEENKQFL 594
Query: 568 PQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 627
+ + IFVNG G+ P+ L+ +R L+ + + +V V LKE+ I +D GR
Sbjct: 595 SKLSIIFVNGGICGLTSKPQQLLSDVRDLKLKHCLKYDVSAVFIPELKEVHISSDAGRFI 654
Query: 628 RPLFIVEKQRLLIKKRDIIALQQRESPEDGGWH---DLVAKGFIEYIDTEEEETTMISMT 684
RP ++ LQ ++ + W+ + + G + Y D E E + I++
Sbjct: 655 RP---------------VLNLQSIKTNGNVMWNSFQNCLENGHVVYKDAYEIEQSQIAIN 699
Query: 685 INDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 744
+ DL + Y Y EIH S +LGV A+ IPF +H QSPR YQS+M KQA+G
Sbjct: 700 LQDLSR--------YPTVYDSMEIHASCMLGVMAAQIPFAEHTQSPRLCYQSSMAKQAIG 751
Query: 745 IYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV 804
+ ++ + D V+ Y Q+PLVTT+ E F P G+NA+VA+A Y+G+NQEDS+
Sbjct: 752 -NIPSHHVKSDNTTRVMDYVQRPLVTTQIAEMNRFNDFPNGLNAMVAVAIYTGFNQEDSI 810
Query: 805 IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD--- 861
I+N++SIDRG F + +++ EE+K+G V E P S R +Y L+D+
Sbjct: 811 ILNKASIDRGMFHVVTYKTIIVEERKIG--VNEKICMPVAS---VRRMNNYSLLEDNPES 865
Query: 862 ---GLAPPGTRVSGEDVIIGKT-TPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLL 917
G+ + V DV++GK T IS+D + + DHS + SE G VD+++
Sbjct: 866 PYFGVVKVKSFVKRNDVLVGKVITKISKDGTRQET------DHSTIVSISEEGKVDRIIR 919
Query: 918 TTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 977
T+ G+ K+ + + P+IGDKF S QKGTVGM + DMP+ +G PD+I+NP
Sbjct: 920 TSKK-GILMFKIVIAQQKRPEIGDKFCSAMAQKGTVGMILEEVDMPFMEDGSIPDMIINP 978
Query: 978 HAIPSRMTIGQLIECIMGKVAAHMGKE-GDATPFTDVTVDN-------ISKALHKCGYQM 1029
H +PSRMTI Q++ IMGK + GDA+PF + +++ + K L +CGY
Sbjct: 979 HCLPSRMTINQIMASIMGKTCCAKNETFGDASPFQESSLEKPQDKIHALCKELEECGYNY 1038
Query: 1030 RGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ--ILTRQPAEGRSR 1087
G ETM G G++L A IF GP YY RL HMV DKI SR + +TRQP GR+
Sbjct: 1039 NGTETMMCGWNGKKLRAEIFFGPVYYHRLTHMVSDKIFSRASTNQKRHAITRQPLNGRAN 1098
Query: 1088 DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGC 1147
+GGLR GEME+DCM+ HG S FL E++FDQSD + +++C C +N F C GC
Sbjct: 1099 EGGLRIGEMEKDCMLVHGISKFLHEKMFDQSDKFIINLCVPCKSYFKVVKTQNGFFCSGC 1158
Query: 1148 KNKTDIVQVHIPYACKLLFQELMAMA 1173
N DIV+ + P+A KL FQEL AM
Sbjct: 1159 -NGIDIVKFNCPFAAKLFFQELTAMG 1183
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 619 bits (1595), Expect = e-176, Method: Compositional matrix adjust.
Identities = 409/1197 (34%), Positives = 610/1197 (50%), Gaps = 134/1197 (11%)
Query: 21 EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQ 80
E Q +++FEE GL+ QL+S++ FI++ +Q + + DI + P
Sbjct: 19 ESFLQTFCKKAATSFFEEFGLISHQLNSYNFFIEHGLQNVFESFGDILVEP--------- 69
Query: 81 SDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 140
SF I + D AT+F K + + K G
Sbjct: 70 ----------SFDVI-----KKKDGDWRYATVFKK--------------IVIKHDKFKTG 100
Query: 141 HDGEEVTETQDFTK--VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGS 198
D E D K + IG +P+M++S C + +++ + G C +DQGGYF+I G+
Sbjct: 101 QDEYVEKEILDVKKQDILIGSIPVMVKSVLCKTSEKGKENCKK-GNCAFDQGGYFVIKGA 159
Query: 199 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGS 258
EKV IAQE+M T +++ P ++ +E + +NR VR+ A+
Sbjct: 160 EKVFIAQEQMCTKRLWI--SNSPWTVSFRSETK-----RNR----FIVRLSENEKAEDYK 208
Query: 259 SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEAFVI 318
+ + T+ ++ TEIP+ ++F ALG +DK+ ++ I +D D + L S+ EA +
Sbjct: 209 IMEKV-LTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHEADAV 267
Query: 319 ----QNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGY 374
+ AL Y+ + + T+ + + L+ + P + KKA + GY
Sbjct: 268 CEAFRCGNNALTYVEHQ---IKSTKFPPAESVDDCLRLYLFPCLQG----LKKKARFLGY 320
Query: 375 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK 434
++ LL G+R ++RD + NKR++LAG LL R+ R + +QK +
Sbjct: 321 MVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKQLSGDG 380
Query: 435 DVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLN 492
D+ ++ + A IT+GL + +TG W R +GV L R TL LRR
Sbjct: 381 DLKPIEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTR 440
Query: 493 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
+ GK+ R H S WG +C TP+G+ CGLVKN++L+ ++ ++E L
Sbjct: 441 QQVLYTGKVGDARHPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVST-QGLESVVEMLF 499
Query: 553 EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
G E + + K+ +NG WVG+ D E V L+ RR+ ++ E+ + RD
Sbjct: 500 TCGMEELMNDTSTPLCGKHKVLLNGDWVGLCADSESFVGELKSRRRQSELPLEMEIKRDK 559
Query: 613 RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYID 672
E+RI+TD GR RPL +VE L +++ P + L+ +G +E I
Sbjct: 560 DDNEVRIFTDAGRLLRPLLVVENLHKL----------KQDKPTQYPFKHLLDQGILELIG 609
Query: 673 TEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
EEEE + I L++ YTHCE+ S +LGV +I+PF +H+ R
Sbjct: 610 IEEEEDCTTAWGIKQLLKE--------PKNYTHCELDLSFLLGVSCAIVPFANHDHGKRV 661
Query: 733 TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
YQS +QA+G TN R DTL+ L+YPQKPL T A E L L G NAIVA
Sbjct: 662 LYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVA 721
Query: 792 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE--------EKKMGTLVKEDFGRPD 843
+ + GYNQEDS++MN++S++RG FRS RSY+ E KKM LV+ FG+
Sbjct: 722 VNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKDSEKRKKMDELVQ--FGKTY 779
Query: 844 RSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSIS 903
+ G D L+DDG G +S D++IG+ T + DHSI
Sbjct: 780 S------KIGKVDSLEDDGFPFIGANMSTGDIVIGRCTE-------------SGADHSIK 820
Query: 904 LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963
L+H+E G+V +V+L++N +G F V +R VR P +GDKFSS HGQKG +G Q++ P
Sbjct: 821 LKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFP 880
Query: 964 WTVEGITPDIIVNPHAIPSRMTIGQLIECIM------------GKVAAHMGKEGDATPFT 1011
+T++GI PDI++NPHA PSR T GQL+E + G AA+ ATPF+
Sbjct: 881 FTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFS 940
Query: 1012 DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGR 1071
V I++ LH+ G+ G E +YNG +G + ++IF+GPT+YQRL HM ++K+ R
Sbjct: 941 TPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNT 1000
Query: 1072 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGL 1131
GPV LTRQP R R GG+RFGEMERDC+IAHGAS L ERLF SD+ ++H+C C
Sbjct: 1001 GPVHPLTRQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKT 1060
Query: 1132 IA-------IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1181
A + K CR C + +V+V++PY KLL QEL +M I TK
Sbjct: 1061 YANVIERTPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGITLNFDTK 1117
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3 SV=1
Length = 1140
Score = 612 bits (1579), Expect = e-174, Method: Compositional matrix adjust.
Identities = 397/1209 (32%), Positives = 625/1209 (51%), Gaps = 131/1209 (10%)
Query: 20 EEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQ 79
++ ++ ++ +++ YF+ GLV+ Q+++F+ FI ++ I++ + I+ +S N
Sbjct: 11 DKHLSSDNRAKIVADYFKTNGLVKHQIETFNHFISKGLKTIINNES--SIKYQSHDN--- 65
Query: 80 QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKK 139
Y + F IY+ P + + D L+P+ AR ++L+Y+ + V+V + V K
Sbjct: 66 --------YSLKFTNIYVEYPSIIDDDRTIRDLYPQEARNKDLSYTGNVCVNVIEMVENK 117
Query: 140 GHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL-GECPYDQGGYFIINGS 198
+++E +V I K+PIML S C L + + + ++ G DQGGYFIING
Sbjct: 118 EGKPPQISEQY---RVPIAKIPIMLGSDVCHLSKYTPLENEQINGHSQADQGGYFIINGK 174
Query: 199 EKVLIAQEKMSTNHVYVFKKRQPNKY-AYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGG 257
E+VLI+Q + + N F K K + E+RSM E S V+M+
Sbjct: 175 ERVLISQVRKAYNKPVCFVKSTSQKEDVLICEMRSMCEETFHSTSVQ-VKMIKNK----- 228
Query: 258 SSGQYIRATLPYIR--TEIPIIIVFRALGFVADK------------------------DI 291
I +L R +IP+ IVF+ LG+ D+ D
Sbjct: 229 -----IMVSLKLKRKLIDIPVGIVFKCLGYNPDQMGSKFRSLFNLPPEYEKYIDAIKNDC 283
Query: 292 LEHICY---------DFQDTQMMELLRPSLEE----AFVIQNQQVALDYIGKRGATVGVT 338
LE Y D D+ ++ V +N ++D G AT G+T
Sbjct: 284 LEEFAYGIAVSAADGDNSDSGGESGGEEEADQEEHIVKVFRNMSTSVDKDGGMAAT-GIT 342
Query: 339 RDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 398
I+ ++ L ++ PH+G ++ +++ + LL + D+RD Y +K
Sbjct: 343 ----IEDVQKSLDMDLFPHLGITS-TRKQRVDLLAFMVKKYLLTLTRKIPVDNRDDYNHK 397
Query: 399 RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATG 458
R++ AG L LFR+L++K + ++ + ++ ++ IT+G+ YS ++G
Sbjct: 398 RVETAGELYSFLFRLLYKKFQKTCITQIRN-----RKPDISNFLRTSGITTGILYSFSSG 452
Query: 459 NWGQANAAGTRAGVSQVLN-RLTYASTLSHLRRLNSPIGREGKLAKP---RQLHNSQWGM 514
WG R GVSQV+N +++ + S LRR+ P ++GK AK RQ+H S +
Sbjct: 453 YWGVQRNTYIRTGVSQVVNPKVSLLANYSSLRRVVIPESKDGKEAKTSEIRQIHPSSSFL 512
Query: 515 MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIF 574
+CP ETPEG+ G V N+A+ +T G + I++ ++ +G + + +
Sbjct: 513 VCPVETPEGKGVGTVLNMAVFCQVTTGISTCEIMDQIDSFGVDLKCHCTIKDPNNCLLLL 572
Query: 575 VNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE 634
+NG G + RL D N + V R + + E I++D GR RP+F ++
Sbjct: 573 INGSPYGNGH-----ANVIHRLNFLNDTNISIVVNRALGVIE--IFSDAGRFIRPIFDLD 625
Query: 635 KQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLH 694
K I + E W + I YID E I++ + DL +
Sbjct: 626 K----------ICNFEGEIVPSFKW--FLDNQLIRYIDINEAAANSIAIELRDL---STN 670
Query: 695 PEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 754
P Y E+ P + G+ A IIPFPD QS RN + S+M KQA+G +V + +
Sbjct: 671 PNTRY----NLMELDPCGMFGIVAGIIPFPDRTQSARNCFYSSMVKQAIG-FVPCHNLKT 725
Query: 755 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 814
+T+++ L YPQKPLVTT E+ + P GINAIVAIACY+GYNQEDS+I+N+SSIDRG
Sbjct: 726 ETVSHTLNYPQKPLVTTSFAEYNQLNEYPNGINAIVAIACYTGYNQEDSIILNKSSIDRG 785
Query: 815 FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGED 874
F ++ + ++ +EKK G +++E P SN + +R +Y + DG+ RV D
Sbjct: 786 LFGTITYNTFTAQEKKNG-IIEERIEIP--SNAIKIRDCNYGLVGPDGIVRLRQRVKKGD 842
Query: 875 VIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSV 934
V+I K T ++++ + D S+ ++H E G VD+++ DG R VKV + +
Sbjct: 843 VLICKVTIKNKNQDEKLV------DSSVIVQHGEEGYVDRIVDNV-IDGCRIVKVVIGQM 895
Query: 935 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 994
R P+IGDKF S QKGT GM + QEDMP+T G+TPDII+NP+ IPSRMTI Q+I +M
Sbjct: 896 RTPEIGDKFCSGMAQKGTCGMIFPQEDMPFTASGMTPDIIINPNCIPSRMTINQIISTVM 955
Query: 995 GKV--AAHMGKEGDATPF---TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 1049
GK+ + + F ++ + + L G+ G E MY+G TG R+ + IF
Sbjct: 956 GKLYTVNPNPRFRNGNSFQENSNTILKELCHHLKLNGFDPSGSEVMYSGFTGERIQSTIF 1015
Query: 1050 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 1109
+GPTYY RLKHMV DK+H+R G V L RQP GRS+ GGLRFGEME+DC++ HGA+ F
Sbjct: 1016 MGPTYYHRLKHMVKDKMHARSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHGATQF 1075
Query: 1110 LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQEL 1169
L ER+F SD +++ VC+ CG+++ S +C C ++ + +IPY+CK L QEL
Sbjct: 1076 LNERMFLNSDPFQIDVCKDCGMMS-----STSKKCHHC-GSINVKRCNIPYSCKNLLQEL 1129
Query: 1170 MAMAIAPRM 1178
M I ++
Sbjct: 1130 NGMGIKTKI 1138
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 566 bits (1458), Expect = e-160, Method: Compositional matrix adjust.
Identities = 281/616 (45%), Positives = 399/616 (64%), Gaps = 22/616 (3%)
Query: 571 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 630
TKI++NG +G +PE V+ +R+ RR +V+ E+ + E+ I+TD GR RPL
Sbjct: 4 TKIYINGKLIGTCENPEEFVEEMRKKRRSGEVSPEMNITHYPENHEIYIFTDPGRARRPL 63
Query: 631 FIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 690
IVE L+ + + L+ E W DL+A G IEY+D EEEE I+M+ +++
Sbjct: 64 IIVEDGEPLLTEEHLEKLETGEM----SWDDLIAAGIIEYLDAEEEENAYIAMSPDEI-- 117
Query: 691 ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 750
D +TH EI PS +LG+CA IIPF +HN SPRNT ++ M KQA+G+Y +NY
Sbjct: 118 ---------NDEHTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNY 168
Query: 751 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 810
R DT A++L++PQ P+V TR ++ + + P+G N +VA+ Y GYN ED++I+N++S
Sbjct: 169 DLRTDTRAHLLHHPQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKAS 228
Query: 811 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 870
++RG RS FFRSY E++ ++ F P++ Y LD+DG+ P V
Sbjct: 229 LERGLARSSFFRSYEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIINPEAEV 288
Query: 871 SGEDVIIGKTTPI----SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
S DV+IGKT+P DE A R RR+ S+++RH E G+VD VLLT +G R
Sbjct: 289 SSGDVLIGKTSPPRFLEEIDEFGTVAER--RRETSVTVRHGEKGIVDAVLLTETVEGSRL 346
Query: 927 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
K+RVR R P++GDKF+SRHGQKG VG+ +QEDMP+T +GI PD+IVNPHAIPSRM++
Sbjct: 347 AKIRVREQRQPELGDKFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMSV 406
Query: 987 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
GQ++E + GK A G+ D TPFT D+I +AL G++ G E++YNG TG R+ A
Sbjct: 407 GQVLEMLAGKAACMEGRRVDGTPFTGEDEDDIKEALRANGFETAGVESLYNGITGERIEA 466
Query: 1047 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 1106
IF+G YYQ+L HM DK+++R RGPVQ+LTRQP EGR+R+GGLRFGEMERDC+IAHGA
Sbjct: 467 EIFIGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGA 526
Query: 1107 SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 1166
+ LKERL D+SD Y VC CG+IA+ + ++ C C++ ++ V + YA KLL
Sbjct: 527 ALALKERLLDESDKYEALVCADCGMIAVYDKIRDKKYCPICED-SESFPVEVSYAFKLLL 585
Query: 1167 QELMAMAIAPRMLTKE 1182
EL ++ I P+++ ++
Sbjct: 586 DELKSLCIFPKLILED 601
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 560 bits (1444), Expect = e-158, Method: Compositional matrix adjust.
Identities = 286/617 (46%), Positives = 400/617 (64%), Gaps = 23/617 (3%)
Query: 571 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPL 630
TKI++NG +G +PE V+ +R RR +V+ E+ + E+ I+TD GR RPL
Sbjct: 4 TKIYINGKLIGTCDNPEEFVEEIRAKRRSGEVSHEMNITHYPENHEIYIFTDPGRARRPL 63
Query: 631 FIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQ 690
IVE L+K+ + L E W DL+++G IEY+D EEEE T I+M+
Sbjct: 64 IIVEDGEPLLKEEHLEKLSSGEME----WDDLISQGIIEYLDAEEEENTYIAMS------ 113
Query: 691 ARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 750
PEE + +TH EI PS +LG+CA IIPF +HN SPRNT ++ M KQA+G+Y +NY
Sbjct: 114 ----PEEV-TEEHTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNY 168
Query: 751 QFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS 810
R DT A++L++PQ P+V TR ++ + + P+G N +VA+ Y GYN ED++I+N++S
Sbjct: 169 NLRTDTRAHLLHHPQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKAS 228
Query: 811 IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRV 870
++RG RS FFRSY E++ ++ F P++ Y LD+DG+ P T V
Sbjct: 229 LERGLARSSFFRSYEATERRYPGGQEDRFEIPEKGVRGYRSERDYRHLDEDGIINPETEV 288
Query: 871 SGEDVIIGKTTPI----SQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
S DV+IGKT+P DE A R RR+ S+++RH E G+VD VLLT +G R
Sbjct: 289 SSGDVLIGKTSPPRFLEEIDEFGTVAER--RRETSVTVRHGEEGIVDAVLLTETVEGSRL 346
Query: 927 VKVRVRSVRIPQ-IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 985
K+RVR R P+ IGDKF+SRHGQKG VG+ +QEDMP+T +G+ PD+IVNPHAIPSRM+
Sbjct: 347 AKIRVREQRQPEFIGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPHAIPSRMS 406
Query: 986 IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 1045
+GQ++E + GK A G+ D TPFT ++ +AL G++ G ET+YNG TG R+
Sbjct: 407 VGQVLEMLAGKAACMEGRRVDGTPFTGEEEKDLKEALKANGFESAGVETLYNGITGERIE 466
Query: 1046 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 1105
A IF+G YYQ+L HM D+I++R RGPVQ+LTRQP EGR+R+GGLRFGEMERDC+IAHG
Sbjct: 467 AEIFIGVAYYQKLHHMTTDRIYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHG 526
Query: 1106 ASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLL 1165
A+ LKERL D+SD Y VC CG+IAI + ++ C C++ ++ V I YA KLL
Sbjct: 527 AALALKERLLDESDKYEALVCAECGMIAIYDKIRDKKYCPICED-SESFPVEISYAFKLL 585
Query: 1166 FQELMAMAIAPRMLTKE 1182
EL ++ I P+++ ++
Sbjct: 586 LDELKSLCIFPKLVLED 602
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust.
Identities = 264/616 (42%), Positives = 379/616 (61%), Gaps = 20/616 (3%)
Query: 571 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV-VRDIRLKELRIYTDYGRCSRP 629
K++VNG VG H +PE L + +R RRR +V+ V V VRD R E+ + D GR RP
Sbjct: 7 AKVYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRD-RTGEVIVNADAGRARRP 65
Query: 630 LFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 689
L +VE ++ + ++ A++ D + DLV G +E+ID EEEE ++ +
Sbjct: 66 LLVVENGEPVVTQEEVEAVKNG----DIDFEDLVEAGKVEFIDAEEEEDILVGVE----- 116
Query: 690 QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 749
EE +TH EI P LI G+ A +IP+P+HN SPR T + M KQ++G+ N
Sbjct: 117 ------EEELTTDHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAAN 170
Query: 750 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 809
Y+ R DT ++L+YPQK +V T+ E + + PAG N +VA+ Y G+N ED+++MN+
Sbjct: 171 YRIRPDTRQHLLHYPQKAMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKG 230
Query: 810 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 869
S++R RS FFR+Y EE++ ++ F P +Y LDDDGL P T+
Sbjct: 231 SVERALSRSHFFRTYEGEERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETK 290
Query: 870 VSGEDVIIGKTTP---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
V V++GKT+P + + E G S RR+ S+++R E G+VD V L DG +
Sbjct: 291 VDDSSVLLGKTSPPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKL 350
Query: 927 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
KV VR RIP++GDKF+SRHGQKG VG QEDMP+T EG+ PD+++NPHA+PSRMT+
Sbjct: 351 AKVSVRDERIPELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTV 410
Query: 987 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
G ++E + GK + G+ D TPFT D I L G++ G E MY+G +G ++ A
Sbjct: 411 GHVLEMLGGKAGSLDGRSVDGTPFTGEGEDEIRGTLEDRGFKSSGKEVMYSGVSGEKIEA 470
Query: 1047 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 1106
IF+G +Y +L HMV +K+H+R +GPVQ+LTRQP EGR+R+GGLR GEMERD +I HGA
Sbjct: 471 EIFVGTIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGA 530
Query: 1107 SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 1166
+ LKERL D SD +HVC +CG+ A+ N ++ C C+ +TD+ + + YA KLL
Sbjct: 531 AMVLKERLLDSSDREEIHVCGNCGMTAVENYEQRRVYCPNCEEETDVHSIEMSYAFKLLL 590
Query: 1167 QELMAMAIAPRMLTKE 1182
E+ A+ IAPR+ +E
Sbjct: 591 DEMKALGIAPRLELEE 606
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust.
Identities = 264/616 (42%), Positives = 379/616 (61%), Gaps = 20/616 (3%)
Query: 571 TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGV-VRDIRLKELRIYTDYGRCSRP 629
K++VNG VG H +PE L + +R RRR +V+ V V VRD R E+ + D GR RP
Sbjct: 7 AKVYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRD-RTGEVIVNADAGRARRP 65
Query: 630 LFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLV 689
L +VE ++ + ++ A++ D + DLV G +E+ID EEEE ++ +
Sbjct: 66 LLVVENGEPVVTQEEVEAVKNG----DIDFEDLVEAGKVEFIDAEEEEDILVGVE----- 116
Query: 690 QARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTN 749
EE +TH EI P LI G+ A +IP+P+HN SPR T + M KQ++G+ N
Sbjct: 117 ------EEELTTDHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAAN 170
Query: 750 YQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQS 809
Y+ R DT ++L+YPQK +V T+ E + + PAG N +VA+ Y G+N ED+++MN+
Sbjct: 171 YRIRPDTRQHLLHYPQKAMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKG 230
Query: 810 SIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 869
S++R RS FFR+Y EE++ ++ F P +Y LDDDGL P T+
Sbjct: 231 SVERALSRSHFFRTYEGEERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETK 290
Query: 870 VSGEDVIIGKTTP---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF 926
V V++GKT+P + + E G S RR+ S+++R E G+VD V L DG +
Sbjct: 291 VDDSSVLLGKTSPPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKL 350
Query: 927 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTI 986
KV VR RIP++GDKF+SRHGQKG VG QEDMP+T EG+ PD+++NPHA+PSRMT+
Sbjct: 351 AKVSVRDERIPELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTV 410
Query: 987 GQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTA 1046
G ++E + GK + G+ D TPFT D I L G++ G E MY+G +G ++ A
Sbjct: 411 GHVLEMLGGKAGSLDGRSVDGTPFTGEGEDEIRGTLEDRGFKSSGKEVMYSGVSGEKIEA 470
Query: 1047 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 1106
IF+G +Y +L HMV +K+H+R +GPVQ+LTRQP EGR+R+GGLR GEMERD +I HGA
Sbjct: 471 EIFVGTIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGA 530
Query: 1107 SHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLF 1166
+ LKERL D SD +HVC +CG+ A+ N ++ C C+ +TD+ + + YA KLL
Sbjct: 531 AMVLKERLLDSSDREEIHVCGNCGMTAVENYEQRRVYCPNCEEETDVHSIEMSYAFKLLL 590
Query: 1167 QELMAMAIAPRMLTKE 1182
E+ A+ IAPR+ +E
Sbjct: 591 DEMKALGIAPRLELEE 606
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 525 bits (1352), Expect = e-148, Method: Compositional matrix adjust.
Identities = 276/619 (44%), Positives = 383/619 (61%), Gaps = 25/619 (4%)
Query: 573 IFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 632
I+VNG VG PE LV +R RR+ ++ V + ++ I TD GR RPL +
Sbjct: 11 IYVNGKLVGTTDKPEELVNFIREKRRKGELPQYTTVAYNEESNDIHINTDAGRIVRPLIV 70
Query: 633 VEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQAR 692
VE + + K I L++ E + DLV +G IEY+D EEEE I+++
Sbjct: 71 VENGKPKLTKEHIEKLKKGEIT----FSDLVKEGVIEYLDAEEEENAYIALS-------- 118
Query: 693 LHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 752
EE + +TH EI P ILG+ A + P+P+HN +PR T +AMGKQ++GI ++N ++
Sbjct: 119 ---EEELTEKHTHLEIDPLTILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKW 175
Query: 753 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 812
R+DT + L+YPQ P+V T+ E L F + PAG N +VAI Y GYN ED+++ N+S+ID
Sbjct: 176 RLDTRGHYLHYPQVPIVRTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAID 235
Query: 813 RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 872
RG RS FFR+Y E++ + F PD+ Y L++DG+ + V G
Sbjct: 236 RGLGRSTFFRTYDACERRYPGGQMDRFEIPDKGVRGYRSEECYRYLEEDGIVAVESHVKG 295
Query: 873 EDVIIGKTTP---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKV 929
DVI+GKT+P + + E Q + RRD S+ +RH E G +D+V+LT +G R VKV
Sbjct: 296 GDVIVGKTSPPRFLEEHEITIQV-KPQRRDSSVVVRHGEEGYIDKVILTETKEGNRLVKV 354
Query: 930 RVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 989
+VR +RIP++GDKF+SRHGQKG +G+T QED+P+T GI PDII+NPHAIPSRMT+GQL
Sbjct: 355 KVRDLRIPELGDKFASRHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRMTVGQL 414
Query: 990 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIF 1049
+E + GKV A G+ D T F+ ++ KAL G++ G E MY+G TG++ I+
Sbjct: 415 LEMLGGKVGALEGRRIDGTIFSGEKEWDLRKALEALGFKHHGKEVMYDGKTGKKFEVEIY 474
Query: 1050 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHF 1109
+G YYQ+L H+V KIH+R RGPVQ+LTRQP EGR+R+GGLRFGEMERD +I HGA+
Sbjct: 475 IGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAML 534
Query: 1110 LKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK------NKTDIVQVHIPYACK 1163
LKERL D+SD Y + +C CG AI + K+ C C + I V IPYA K
Sbjct: 535 LKERLMDESDPYDICICSKCGDFAILDYKRGLKYCPICGEIENLYSSKKIPFVRIPYAFK 594
Query: 1164 LLFQELMAMAIAPRMLTKE 1182
LL EL +M I PR+ ++
Sbjct: 595 LLLDELKSMCILPRIKVRD 613
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 522 bits (1345), Expect = e-147, Method: Compositional matrix adjust.
Identities = 268/611 (43%), Positives = 388/611 (63%), Gaps = 19/611 (3%)
Query: 572 KIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 631
++++NG VG H + E L +R LRR+ ++ +V VV E+RI TD GR RPL
Sbjct: 5 RVYINGALVGFHDNGEELANKIRELRRKGRISNQVNVVYYPDSNEVRINTDAGRARRPLI 64
Query: 632 IVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQA 691
+V+ + L+ I +++ E DLV +G IEY+D EEEE +++ ++L
Sbjct: 65 VVKDGKPLVTPEHIEKIKKGELT----IEDLVRQGLIEYLDAEEEENAYVAVYEHELT-- 118
Query: 692 RLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 751
PE +TH E+ PSLI+G+C IP+ +HN SPRNT +AM KQ++GI +N
Sbjct: 119 ---PE------HTHLELDPSLIVGICTGSIPYAEHNASPRNTMGAAMIKQSLGIPYSNLA 169
Query: 752 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSI 811
+R DT +++ +PQ P+VTT + F + PAG N +VA+ Y GYN ED++IMN+ S+
Sbjct: 170 WRTDTRGHLMQHPQVPIVTTDTQVEIKFDERPAGQNFVVAVLSYEGYNIEDALIMNKGSV 229
Query: 812 DRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHG-SYDKLDDDGLAPPGTRV 870
+RG RS F+R+Y EE + ++ F P ++ G R +Y LD+DGL P T V
Sbjct: 230 ERGLGRSFFYRTYESEEMRYPGGQEDKFEIPG-ADISGFRGAEAYAHLDEDGLIFPETEV 288
Query: 871 SGEDVIIGKTTP--ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVK 928
+DV+IG+T+P ++ + S RR+ S+++R +E G+VD V L + G + K
Sbjct: 289 GPDDVLIGRTSPPRFLEEPTELGISPQKRRETSVTMRSNEKGVVDAVFLMQSEGGSKLAK 348
Query: 929 VRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 988
VRVR +RIP++GDKF+SRHGQKG VG+ +EDMP+T GI PD+I+NPHAIPSRMT+G
Sbjct: 349 VRVRDLRIPELGDKFASRHGQKGVVGLLVPEEDMPFTESGIVPDLIINPHAIPSRMTVGH 408
Query: 989 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMI 1048
++E I GKV + G+ D + F + +++ L K G+ G E MY+G TGRR I
Sbjct: 409 VLEMIGGKVGSLEGRRVDGSLFHGESEEDLRATLKKYGFSHTGKEVMYDGITGRRYLVDI 468
Query: 1049 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASH 1108
F+G YYQ+L HMV KIH+R RGPVQ+LTRQP EGR+R GGLRFGEMERD +I HGA+
Sbjct: 469 FVGVIYYQKLYHMVSSKIHARSRGPVQVLTRQPTEGRARKGGLRFGEMERDVLIGHGAAL 528
Query: 1109 FLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1168
LK+RL ++SD V VC +CG +A + ++N+ C C ++++I +V + YA KLL E
Sbjct: 529 LLKDRLLEESDKVEVWVCGNCGHVATYDYRRNTAYCHICDDESNIHKVEMSYAFKLLLDE 588
Query: 1169 LMAMAIAPRML 1179
L +M IAPR++
Sbjct: 589 LKSMMIAPRII 599
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust.
Identities = 272/665 (40%), Positives = 381/665 (57%), Gaps = 43/665 (6%)
Query: 526 CGLVKNLALMVYITVGSAAYPILEFLEEWGTENF-----EEISPAVIPQATKIFVNGCWV 580
CGLVKN ALM ++T + P+L G ++ EE++ A + +NG +
Sbjct: 970 CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSR---NAYLVLLNGQII 1026
Query: 581 GIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLI 640
GIH P+ V TLR++RR + V + ++ + + + D GR RP+ IV+ QR +
Sbjct: 1027 GIHNSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRL 1086
Query: 641 KKRDIIALQQRESPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEA 698
+ I E +DG + D + +G IEY+D EE + ++ E A
Sbjct: 1087 TQEHI------EDLKDGLRTFDDFIREGIIEYLDVNEENDSFLAWR-----------EAA 1129
Query: 699 YADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLA 758
TH EI P +LG A +IP+P HNQSPRNTYQ AMGKQA+G N R+DTL
Sbjct: 1130 IQPWTTHLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLL 1189
Query: 759 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRS 818
Y+L + Q+PL TR ++ L++ +LPAG NA VA+ YSGY+ ED+++MN++S+DRGF R
Sbjct: 1190 YLLVHTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRC 1249
Query: 819 LFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 878
+ + KK G + P ++ +R Y LD DG+A PG +++
Sbjct: 1250 IVLKKQVTSIKKHGNDTSDRIFPPTPND---LRQPKYGLLDSDGIAKPGELAQKGQILVN 1306
Query: 879 KTTPISQDEAQGQA-----SRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRS 933
K +P++ +A S Y + + ++ +D+VLLT+ D +K+ +RS
Sbjct: 1307 KYSPLNTIDATPNPELIPDSAY--KSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRS 1364
Query: 934 VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECI 993
R P++GDKFSSRHGQKG G+ QEDMP++ GI PDII+NPH PSRMTIG++IE +
Sbjct: 1365 TRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELL 1424
Query: 994 MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 1053
GK GK G T F V+NISK L G+ G + + +G TG L IF GP
Sbjct: 1425 AGKAGVLSGKFGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPI 1484
Query: 1054 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKER 1113
+YQ+LKHMV DK+H+R RGP LTRQP EGR+R GGLR GEMERDC+I +GAS + ER
Sbjct: 1485 FYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMER 1544
Query: 1114 LFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 1173
L SD + V+ C++CG + C+ CK+ DI + IPYACKLLFQEL AM
Sbjct: 1545 LMISSDRFTVYACKNCGFLGYEGY------CQYCKSSVDISTIQIPYACKLLFQELQAMN 1598
Query: 1174 IAPRM 1178
I PR+
Sbjct: 1599 IVPRL 1603
Score = 263 bits (673), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 159/520 (30%), Positives = 273/520 (52%), Gaps = 69/520 (13%)
Query: 26 EDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 85
E+ W ++ A+ + +GLV+Q +DSF+ FI M++IV + R ++++P
Sbjct: 37 EEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANE----RLTAENDPS------- 85
Query: 86 TIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV----TKRVIKKGH 141
Y + F I + P TE + ++ L P+ RLR++TYSAP++V++ K++I K
Sbjct: 86 --YFVRFTDINVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRNKQIISK-- 141
Query: 142 DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV 201
V IG +PIMLRSS C L + + + + LGECP D GGYFI+ G EKV
Sbjct: 142 -----------RDVHIGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKV 190
Query: 202 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 261
++ E++S N + + +S+ P +++ S T + +G
Sbjct: 191 ILNHEQLSKNRIII-----------------EMDSKGLPSASV----TSSTHERKSRTGV 229
Query: 262 YIRATLPYIR-----TEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSLEEA- 315
++ Y++ +IP+ IV + +G D+++ + + D + + PSLEE
Sbjct: 230 TLKNEKLYLKHNTFGEDIPVAIVLKGMGVETDQEMAQLVG---SDDVFLNAITPSLEECQ 286
Query: 316 -FVIQNQQVALDYIGKRGATV----GVTRDK-RIKYAKEILQKEMLPHVGTGDFCETKKA 369
+ ALDY+G R GV K + + A++IL +L HV + K
Sbjct: 287 KCGVHTAAQALDYLGSRIKVFRRPYGVQNKKTKSEEARDILAGVVLNHVPVRRYNFRLKV 346
Query: 370 YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC 429
Y +I R+++ + + DD+D+YGNKR++L+G L+ LF F+K +++ V +
Sbjct: 347 IYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSELKKSVDQA 406
Query: 430 V---DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 486
+ + ++++L I+ TIT+G +++++G W R+GVSQVL+RL+Y S +
Sbjct: 407 IAKANRAENLDLPKLIRTDTITNGFTHAISSGQWNLKRFRMERSGVSQVLSRLSYISCMG 466
Query: 487 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAC 526
+ R+ S + K+A PR L SQWGM+CP++TPEG+AC
Sbjct: 467 MMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC 506
>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
Length = 611
Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust.
Identities = 268/623 (43%), Positives = 379/623 (60%), Gaps = 25/623 (4%)
Query: 569 QATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSR 628
+ ++VNG + +DPE LVK+LR RR ++ + + ++ I TD GR R
Sbjct: 3 KQANVYVNGKLIDTSKDPENLVKSLRIQRRSGKLSPNTSISFNEESNDIHISTDGGRAVR 62
Query: 629 PLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 688
PL +VE + L ++ + + + LV G IE++D EEEE I+M +++
Sbjct: 63 PLVVVENGFSKLTNE----LLEKVNNNELTFEYLVKTGVIEFLDAEEEENARIAMYNDEI 118
Query: 689 VQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVT 748
TH EI P +ILG+ A + P+P+HN +PR T +AMGKQ++GI +
Sbjct: 119 TFEN-----------THVEIDPLVILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMA 167
Query: 749 NYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQ 808
N ++RMDT ++L+YPQ PLV T+ E L F + PAG N +VA+ Y GYN ED+ ++N+
Sbjct: 168 NIKWRMDTRGHLLHYPQVPLVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINK 227
Query: 809 SSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT 868
+S++RG RS FFRSY EK+ + F P++ +Y L DDGL +
Sbjct: 228 ASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLES 287
Query: 869 RVSGEDVIIGKTTP---ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLR 925
V DVI+GKT+P + + E Q ++ RRD S+++RH E G+VD V+L+ +G R
Sbjct: 288 EVRSGDVILGKTSPPRFLEEQEITLQ-TKSQRRDTSVTIRHGEEGVVDLVILSETKEGNR 346
Query: 926 FVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMT 985
KVRVR +R+P+ GDKF+SRHGQKG +G+ QED+P+T +G+ PD+I+NPHAIPSRMT
Sbjct: 347 LGKVRVRDLRVPEFGDKFASRHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMT 406
Query: 986 IGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLT 1045
IGQ++E I GKV + + D T F+ + AL G+ G ETMY+G TGR+L
Sbjct: 407 IGQVLEMIGGKVGSLECRRVDGTIFSGEGEWALRHALENYGFTHSGKETMYDGKTGRKLE 466
Query: 1046 AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHG 1105
IF+G YYQ+L H+V KIH+R RGP+Q+LTRQP EGR+R+GGLRFGEMERD ++AHG
Sbjct: 467 CEIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHG 526
Query: 1106 ASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKTDIVQ------VHIP 1159
A+ LKERL D+SD + +VC CG IAI + K+ C C DI V I
Sbjct: 527 AALLLKERLLDESDPHEDYVCAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIA 586
Query: 1160 YACKLLFQELMAMAIAPRMLTKE 1182
YA KLL EL +M I P++ K+
Sbjct: 587 YAFKLLLDELKSMGIDPKLKLKD 609
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog OS=Frog
virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 502 bits (1292), Expect = e-141, Method: Compositional matrix adjust.
Identities = 373/1229 (30%), Positives = 572/1229 (46%), Gaps = 182/1229 (14%)
Query: 31 VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKI 90
V SA VR ++SFD+ + N +V + ++ Y++
Sbjct: 87 VSSANMHPSNFVRHHIESFDDMLWNEFPAMVAREKPVSVKG----------------YRV 130
Query: 91 SFGQIYLSKPMMTESDGET-ATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTET 149
FG + P DG+ L P AR + TY + D+T VT+
Sbjct: 131 KFGTVRYEPPC---PDGKPWEKLTPAMARRTDATYHSAAVCDLT------------VTDP 175
Query: 150 QDFTKVF----IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ 205
+ V+ + K+P+M+ S+ C + +E GECP D GGYFII G E+V++
Sbjct: 176 KGLETVYPRLELCKIPVMVGSAVC--WTRTEGSPLP-GECPSDPGGYFIIKGKERVVVPH 232
Query: 206 EKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRA 265
+ + + V+K N ++ E RS+ + T+ V+ ++T + + +
Sbjct: 233 IRPAYDQPCVYK----NGDGWLCEFRSVNRETRQ---TVLVQ--AKTDCR-----RKLEF 278
Query: 266 TLPYIRTEIPIIIVFRALG--------------FVADKDILEHICYDFQDTQMMELLRPS 311
+LPYI+ +P+ +VF+ALG F+ D+ + + +ME +
Sbjct: 279 SLPYIKQYVPVGLVFKALGKTAREAVAMCGLGSFLGDEVSCRTVHHQSMAALLMEQHASA 338
Query: 312 LEEAFV-----------IQNQQVALDYIGKRGATVGVTRDKRIK-----YAKEILQKEML 355
E+ + ++Q K V D+ K Y + +L E+
Sbjct: 339 PEDPVADLAKHVPDGRSVYSKQAEGAKQAKYADRASVEEDRNAKGSKEDYVRHVLAGEIF 398
Query: 356 PHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 415
H G A + G+++ R+ A G DRD NKR+D GPL+ L L
Sbjct: 399 LHGGDA-------AEHLGWMVKRMADAASGIGTCTDRDDLANKRVDATGPLIAFLLDGLL 451
Query: 416 RKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG---QANAAGTRAGV 472
++ V+ +V+ + +T+ L ATGNW + R GV
Sbjct: 452 KQY---VKLFVKSAGCQKNLCPYTVLQNSMVMTNSLHMCFATGNWTVKRLGPPSYVRVGV 508
Query: 473 SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL 532
SQVL+ Y + +SHLRR+ + GK + RQLH+S +G +CP ETPEG+ G+V N+
Sbjct: 509 SQVLSNNNYGARVSHLRRIMHAVSFRGKNIRMRQLHSSHYGFLCPYETPEGEKVGIVLNM 568
Query: 533 ALMVYITVGSAAYPILEFLEEW-GTENFEEISPAVIPQA-----TKIFVNGCWVGIHRDP 586
A ++ + +L + G F E +PA + + + V+G G+ DP
Sbjct: 569 AEGAGFSLETPREVVLATVRLGKGLPGFFEGAPARLAWSGAAGSASVDVDGVLCGVTGDP 628
Query: 587 EMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKK---R 643
VG VR+ RL + + + R + ++ Q +++
Sbjct: 629 -------------------VGFVREARLCLPGVSVVWKKVEREIHLLGCQGRFVRRVLDP 669
Query: 644 DIIALQQRESPEDGGWHDL-VAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADT 702
+ I +SP D+ + + + +L L E YAD
Sbjct: 670 EGIRGSGYDSPPAPEERDIEMDPAPSSSPSDSLPCPPGVYVCAQELSVCSLGDGE-YADP 728
Query: 703 YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 762
++ +S+IPF DH QSPRN YQS MGKQA+G N R D + L
Sbjct: 729 PAS-----EILTDAMSSVIPFYDHTQSPRNAYQSNMGKQAIGFPAVNCSDRYDATLHRLD 783
Query: 763 YPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFR 822
YPQK LV +R+++ L F ++ G +VAI G+NQEDSV++N SS+DRG F + +R
Sbjct: 784 YPQKSLVDSRSVKRLGFDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLFSCVTYR 843
Query: 823 SYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGT------RVSGE--- 873
+ +K+ E PD + R YD L DDG+ P RV G+
Sbjct: 844 TVSCADKRRTKYDSEVVCLPDWG--LRNREWDYDLLGDDGVIDPSCAGALARRVEGKRKA 901
Query: 874 -------------------------DVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE 908
V++GK + + G RRD S++++ SE
Sbjct: 902 AKRPAGQRTGGGPAGLCDALWIPAGTVLVGKVS-----HSLGPGGNPMRRDVSLTVKQSE 956
Query: 909 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 968
G +D+V + ++DG + VKVR+R+ R P++GDKF+S QKGT G TQEDMP+ +G
Sbjct: 957 EGYLDRVTVDVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKDG 1016
Query: 969 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT-DVTVDNISKALHKCGY 1027
+ PD+I+NPHA PSRMT+ L++ G A +GK DAT F + V +I++A + G
Sbjct: 1017 VVPDLIINPHAFPSRMTVNYLLQMCFGTAACKLGKTYDATAFEREDVVRDIAEAAKEAGI 1076
Query: 1028 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1087
+++G TGRRL IF+ P YQRLKHMV K+HSR GP LTRQP GRSR
Sbjct: 1077 DCWD-SVLHSGSTGRRLPTKIFMAPCPYQRLKHMVSGKMHSRTHGPTDALTRQPVAGRSR 1135
Query: 1088 DGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFE-CRG 1146
+GG++ GEME+ C I+HGAS LKE ++D SD Y V VC+ CG I+ + FE CR
Sbjct: 1136 EGGIKIGEMEQWCKISHGASESLKESVYDMSDKYEVPVCKECGRIS------DHFEYCRM 1189
Query: 1147 CKNKTDIVQVHIPYACKLLFQELMAMAIA 1175
C + TD+ V +PY K+LFQEL ++ I+
Sbjct: 1190 C-DATDMSLVKLPYTTKILFQELRSIGIS 1217
>sp|P0C8K3|RPB2_ASFM2 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-061 PE=3 SV=1
Length = 1242
Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust.
Identities = 363/1262 (28%), Positives = 589/1262 (46%), Gaps = 134/1262 (10%)
Query: 16 EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
E EE+T+ D + ISA GL+ + SFD+ + N + +IV + +++I + Q
Sbjct: 14 EAVNNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQR 73
Query: 76 NPGQQSDFAETI-YKISFGQIYLSKPMMTE-SDGETATLFPKAARLRNLTYSAPLYVDVT 133
+ + E++ + +F + + +P S G L P ARL L+YS P V++
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNLA 131
Query: 134 KRVIKKGH--DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
VI H +G + + + PIM S+ C Y S+ E+GE P + GG
Sbjct: 132 AEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTYHLSKTAKKEIGEDPNEPGG 191
Query: 192 YFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 249
YFI G E V L+ + +T H++ +Q N E S S + +R +
Sbjct: 192 YFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYM 251
Query: 250 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-----DTQM 304
+ G+ I +T + + IP ++FR G D I+E + +D + +T M
Sbjct: 252 TT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTFM 305
Query: 305 MELLRPSLEEAFVI-------QNQQVALDYIGKR------GATVGVTRDKRIKYAKE--- 348
+E+L S+ + I N++ + ++ ++ + + + ++Y E
Sbjct: 306 IEILEKSIHVSDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQL 365
Query: 349 -ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G L
Sbjct: 366 TILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSL 425
Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA---IKAKTITSGLKYSLATGNWGQAN 464
F+ +F + + ++ K++ Q A + + I +L+ + N
Sbjct: 426 AKAFKAIFNT------SVIAPIINGFKELLKQTAFEDLTQRNIIEAFSAALSKNSASDLN 479
Query: 465 AAGTRAGVS------------------QVLNRLTYASTLSHLRRLNSPIGREG-----KL 501
+ ++ +S Q L R +T+S LR +N+ +
Sbjct: 480 RSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHSTTNASKQTERA 539
Query: 502 AKPRQLHNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENF 559
R++H S G +C A++ + G+ G+ K LA+ + T G L + +
Sbjct: 540 DMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQL 599
Query: 560 EEISPAVIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 616
++S I + ++F+NG W+G + L + R LRR V+ + D + E
Sbjct: 600 ADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDE 659
Query: 617 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GW--------------- 659
+ + D GR +RPL IV+ I+K + + E+ + G W
Sbjct: 660 VEFWLDVGRLTRPLLIVDNN---IEKYNKACYKAAEARKKGDKDWEKHKIPFIQNTRFTS 716
Query: 660 -------------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 706
DLVA+G E+I EE E +++ +I +L R H + +TH
Sbjct: 717 QMAKDILAGTLTLEDLVAQGICEFITPEEAENCLVAFSITEL---RKHKHDV-TRRFTHV 772
Query: 707 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
++ P ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y +
Sbjct: 773 DV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM 831
Query: 767 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
PLV T A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+
Sbjct: 832 PLVKTIAHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YRE 884
Query: 827 EEKKMGTLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
E+ ++ + + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I
Sbjct: 885 EKVELESDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 886 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
+ + + ++Y D S+ E +VD V+ + F +R+R R IGDK SS
Sbjct: 943 E--KDELNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSS 998
Query: 946 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
R G KG + DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G
Sbjct: 999 RSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVT 1058
Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDD 1064
D T F + V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD
Sbjct: 1059 DGTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDD 1118
Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
+ GP LT QP +G+ GGLR GEME + A GA + E+ D SD +
Sbjct: 1119 RYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISY 1178
Query: 1125 VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA-------IAPR 1177
+C +CG AI N ++C C + DI V ++FQ M A ++PR
Sbjct: 1179 ICRNCGEPAIYNASHPIYKCMNCDVQADISMVD-SRRSSIVFQHEMRAANVNITSVLSPR 1237
Query: 1178 ML 1179
+
Sbjct: 1238 VF 1239
>sp|P0C8K2|RPB2_ASFK5 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Pig/Kenya/KEN-50/1950) GN=Ken-065 PE=3 SV=1
Length = 1242
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 362/1262 (28%), Positives = 588/1262 (46%), Gaps = 134/1262 (10%)
Query: 16 EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
E + EE+T+ D + ISA GL+ + SFD+ + N + +IV + +++I + Q
Sbjct: 14 ETVDNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQR 73
Query: 76 NPGQQSDFAETI-YKISFGQIYLSKPMMTE-SDGETATLFPKAARLRNLTYSAPLYVDVT 133
+ + E++ + +F + + +P S G L P ARL L+YS P V +
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLSGLSYSGP--VKLA 131
Query: 134 KRVIKKGH--DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
VI H +G + + + PIM S+ C + S+ E+GE P + GG
Sbjct: 132 AEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHDLSKTAKKEIGEDPNEPGG 191
Query: 192 YFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 249
YFI G E V L+ + +T H++ +Q N E S S + +R +
Sbjct: 192 YFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYM 251
Query: 250 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-----DTQM 304
+ G+ I +T + + IP ++FR G D I+E + +D + +T M
Sbjct: 252 TT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTFM 305
Query: 305 MELLRPSLEEAFVI-------QNQQVALDYIGKR------GATVGVTRDKRIKYAKE--- 348
+E+L S+ + I N++ + ++ ++ + + + ++Y E
Sbjct: 306 IEILEKSIHVSDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQL 365
Query: 349 -ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G L
Sbjct: 366 TILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSL 425
Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA---IKAKTITSGLKYSLATGNWGQAN 464
F+ +F + + ++ K++ Q A + + I +L+ N
Sbjct: 426 AKAFKAIFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLN 479
Query: 465 AAGTRAGVS------------------QVLNRLTYASTLSHLRRLNSPIGREG-----KL 501
+ ++ +S Q L R +T+S LR +N+ +
Sbjct: 480 RSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHSTTNASKQTERA 539
Query: 502 AKPRQLHNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENF 559
R++H S G +C A++ + G+ G+ K LA+ + T G L + +
Sbjct: 540 DMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQL 599
Query: 560 EEISPAVIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 616
++S I + ++F+NG W+G + L + R LRR V+ + D + E
Sbjct: 600 ADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDE 659
Query: 617 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGG--W--------------- 659
+ + D GR +RPL IV+ I+K + + E+ + G W
Sbjct: 660 VEFWLDVGRLTRPLLIVDNN---IEKYNEACYKAAEARKKGNKDWEKHKISFVQNTRFTS 716
Query: 660 -------------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 706
DLVA+G E+I EE E +++ +I +L R H + +TH
Sbjct: 717 QMAKAILAGTLTLEDLVAQGICEFITPEEAENCLVAFSITEL---RKHKHDV-TRRFTHV 772
Query: 707 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
++ P ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y +
Sbjct: 773 DV-PQSILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM 831
Query: 767 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
PLV T A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+
Sbjct: 832 PLVKTIAHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YRE 884
Query: 827 EEKKMGTLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
E+ ++ + + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I
Sbjct: 885 EKVELESDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 886 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
+ + + ++Y D S+ E +VD V+ + F +R+R R IGDK SS
Sbjct: 943 E--KDELNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSS 998
Query: 946 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
R G KG + DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G
Sbjct: 999 RSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVT 1058
Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDD 1064
D T F + V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD
Sbjct: 1059 DGTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDD 1118
Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
+ GP LT QP +G+ GGLR GEME + A GA + E+ D SD +
Sbjct: 1119 RYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISY 1178
Query: 1125 VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA-------IAPR 1177
+C +CG AI N ++C C + DI V ++FQ M A ++PR
Sbjct: 1179 ICRNCGEPAIYNASHPIYKCMNCDVQADISMVD-SRRSSIVFQHEMRAANVNITSVLSPR 1237
Query: 1178 ML 1179
+
Sbjct: 1238 VF 1239
>sp|P0C8K5|RPB2_ASFWA DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Warthog/Namibia/Wart80/1980) GN=War-063 PE=3
SV=1
Length = 1242
Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust.
Identities = 362/1249 (28%), Positives = 587/1249 (46%), Gaps = 127/1249 (10%)
Query: 16 EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
E + EE+T+ D + ISA GL+ + SFD+ + N + +IV + +++I + Q
Sbjct: 14 ETVDNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQR 73
Query: 76 NPGQQSDFAETI-YKISFGQIYLSKPMMTE-SDGETATLFPKAARLRNLTYSAPLYVDVT 133
+ + E++ + +F + + +P S G L P ARL L+YS P V++
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNLA 131
Query: 134 KRVIKKGH--DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
VI H +G + + + PIM S+ C + S+ E+GE P + GG
Sbjct: 132 AEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGG 191
Query: 192 YFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 249
YFI G E V L+ + +T H++ +Q N E S S + +R +
Sbjct: 192 YFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYM 251
Query: 250 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-----DTQM 304
+ G+ I +T + + IP ++FR G D I+E + +D + +T M
Sbjct: 252 TT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSLVNTFM 305
Query: 305 MELLRPS---LEEAF-VIQ---NQQVALDYIGKR------GATVGVTRDKRIKYAKE--- 348
+E+L S L+ F +Q N++ + ++ ++ + + + ++Y E
Sbjct: 306 IEILEKSIHVLDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQL 365
Query: 349 -ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G L
Sbjct: 366 TILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSL 425
Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA---IKAKTITSGLKYSLATGNWGQAN 464
F+ +F + + ++ K++ Q A + + I +L+ N
Sbjct: 426 AKAFKAIFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLN 479
Query: 465 AAGTRAGVS------------------QVLNRLTYASTLSHLRRLNS-----PIGREGKL 501
+ ++ +S Q L R +T+S LR +N+ + +
Sbjct: 480 RSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERA 539
Query: 502 AKPRQLHNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENF 559
R++H S G +C A++ + G+ G+ K LA+ + T G L + +
Sbjct: 540 DMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQL 599
Query: 560 EEISPAVIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 616
++S I + ++F+NG W+G + L + R LRR V+ + D + E
Sbjct: 600 ADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDE 659
Query: 617 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GW--------------- 659
+ + D GR +RPL IV+ I+K + + E+ + G W
Sbjct: 660 VEFWLDVGRLTRPLLIVDNN---IEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTRFTS 716
Query: 660 -------------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 706
DLVA+G E+I EE E +++ +I ++ R H + +TH
Sbjct: 717 QMAKDILAGTLTLEDLVAQGICEFITPEEAENCLVAFSI---IELRKHKHDV-TRRFTHV 772
Query: 707 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
++ P ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y +
Sbjct: 773 DV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM 831
Query: 767 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
PLV T A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+
Sbjct: 832 PLVKTIAHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YRE 884
Query: 827 EEKKMGTLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
E+ ++ + + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I
Sbjct: 885 EKVELESDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 886 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
+ + + ++Y D S+ E +VD V+ + F +R+R R IGDK SS
Sbjct: 943 E--KDELNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSS 998
Query: 946 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
R G KG + DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G
Sbjct: 999 RSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVT 1058
Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDD 1064
D T F + V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD
Sbjct: 1059 DGTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDD 1118
Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
+ GP LT QP +G+ GGLR GEME + A GA + E+ D SD +
Sbjct: 1119 RYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISY 1178
Query: 1125 VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 1173
VC +CG AI N ++C C + DI V ++FQ M A
Sbjct: 1179 VCRNCGEPAIYNASHPIYKCMNCDVQADIGMVD-SRRSSIVFQHEMRAA 1226
>sp|P0C8K4|RPB2_ASFP4 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-065 PE=3 SV=1
Length = 1242
Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust.
Identities = 362/1249 (28%), Positives = 587/1249 (46%), Gaps = 127/1249 (10%)
Query: 16 EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
E + EE+T+ D + ISA GL+ + SFD+ + N + +IV + +++I + Q
Sbjct: 14 ETVDNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQR 73
Query: 76 NPGQQSDFAETI-YKISFGQIYLSKPMMTE-SDGETATLFPKAARLRNLTYSAPLYVDVT 133
+ + E++ + +F + + +P S G L P ARL L+YS P V++
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNLA 131
Query: 134 KRVIKKGH--DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
VI H +G + + + PIM S+ C + S+ E+GE P + GG
Sbjct: 132 AEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGG 191
Query: 192 YFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 249
YFI G E V L+ + +T H++ +Q N E S S + +R +
Sbjct: 192 YFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYM 251
Query: 250 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-----DTQM 304
+ G+ I +T + + IP ++FR G D I+E + +D + +T M
Sbjct: 252 TT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSLVNTFM 305
Query: 305 MELLRPS---LEEAF-VIQ---NQQVALDYIGKR------GATVGVTRDKRIKYAKE--- 348
+E+L S L+ F +Q N++ + ++ ++ + + + ++Y E
Sbjct: 306 IEILEKSIHVLDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQL 365
Query: 349 -ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G L
Sbjct: 366 TILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSL 425
Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA---IKAKTITSGLKYSLATGNWGQAN 464
F+ +F + + ++ K++ Q A + + I +L+ N
Sbjct: 426 AKAFKAIFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLN 479
Query: 465 AAGTRAGVS------------------QVLNRLTYASTLSHLRRLNS-----PIGREGKL 501
+ ++ +S Q L R +T+S LR +N+ + +
Sbjct: 480 RSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERA 539
Query: 502 AKPRQLHNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENF 559
R++H S G +C A++ + G+ G+ K LA+ + T G L + +
Sbjct: 540 DMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQL 599
Query: 560 EEISPAVIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 616
++S I + ++F+NG W+G + L + R LRR V+ + D + E
Sbjct: 600 ADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDE 659
Query: 617 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GW--------------- 659
+ + D GR +RPL IV+ I+K + + E+ + G W
Sbjct: 660 VEFWLDVGRLTRPLLIVDNN---IEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTRFTS 716
Query: 660 -------------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 706
DLVA+G E+I EE E +++ +I ++ R H + +TH
Sbjct: 717 QMAKDILAGTLTLEDLVAQGICEFITPEEAENCLVAFSI---IELRKHKHDV-TRRFTHV 772
Query: 707 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
++ P ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y +
Sbjct: 773 DV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM 831
Query: 767 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
PLV T A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+
Sbjct: 832 PLVKTIAHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YRE 884
Query: 827 EEKKMGTLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
E+ ++ + + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I
Sbjct: 885 EKVELESDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 886 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
+ + + ++Y D S+ E +VD V+ + F +R+R R IGDK SS
Sbjct: 943 E--KDELNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSS 998
Query: 946 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
R G KG + DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G
Sbjct: 999 RSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVT 1058
Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDD 1064
D T F + V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD
Sbjct: 1059 DGTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDD 1118
Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
+ GP LT QP +G+ GGLR GEME + A GA + E+ D SD +
Sbjct: 1119 RYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISY 1178
Query: 1125 VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 1173
VC +CG AI N ++C C + DI V ++FQ M A
Sbjct: 1179 VCRNCGEPAIYNASHPIYKCMNCDVQADIGMVD-SRRSSIVFQHEMRAA 1226
>sp|P42487|RPB2_ASFB7 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(strain Badajoz 1971 Vero-adapted) GN=Ba71V-053 PE=3 SV=1
Length = 1242
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 358/1249 (28%), Positives = 583/1249 (46%), Gaps = 127/1249 (10%)
Query: 16 EEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQH 75
E + EE+T+ D + ISA GL+ + SFD+ + N + +IV + +++I + Q
Sbjct: 14 ETVDNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQR 73
Query: 76 NPGQQSDFAETI-YKISFGQIYLSKPMMTE-SDGETATLFPKAARLRNLTYSAPLYVDVT 133
+ + E++ + +F + + +P S G L P ARL L+YS P V++
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNLA 131
Query: 134 KRVIKKGH--DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
VI H +G + + + PIM S+ C + S+ E+GE P + GG
Sbjct: 132 AEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGG 191
Query: 192 YFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 249
YFI G E V L+ + +T H++ +Q N E S S + +R +
Sbjct: 192 YFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYM 251
Query: 250 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-----DTQM 304
+ G+ I +T + + IP ++FR G D I+E + +D + +T M
Sbjct: 252 TT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTFM 305
Query: 305 MELLRPSLEEAFVI-------QNQQVALDYIGKR------GATVGVTRDKRIKYAKE--- 348
+E+L S+ I N++ + ++ ++ + + + ++Y E
Sbjct: 306 IEILEKSIHVLDPIFQPVQHEPNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQL 365
Query: 349 -ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 407
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G L
Sbjct: 366 TILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSL 425
Query: 408 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFA---IKAKTITSGLKYSLATGNWGQAN 464
F+ +F + + ++ K++ Q A + + I +L+ N
Sbjct: 426 AKAFKAIFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLN 479
Query: 465 AAGTRAGVS------------------QVLNRLTYASTLSHLRRLNS-----PIGREGKL 501
+ ++ +S Q L R +T+S LR +N+ + +
Sbjct: 480 RSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERA 539
Query: 502 AKPRQLHNSQWGMMCPAETPE-GQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENF 559
R++H S G +C A++ + G+ G+ K LA+ + T G L + +
Sbjct: 540 DMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQL 599
Query: 560 EEISPAVIPQA--TKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 616
++S I + ++F+NG W+G + L + R RR V+ + D + E
Sbjct: 600 ADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMFRREGKIVHPHTTIYWDSMVDE 659
Query: 617 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDG--GW--------------- 659
+ + D GR +RPL IV+ I+K + + E+ + G W
Sbjct: 660 VEFWLDVGRLTRPLLIVDNN---IEKYNQACYKAAEARKKGDKDWEKHKIPFIQNTRFTS 716
Query: 660 -------------HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHC 706
DLVA+G E+I EE E +++ +I ++ R H + +TH
Sbjct: 717 QMAKDILAGTLTLEDLVAQGICEFITPEEAENCLVAFSI---IELRKHKHDV-TRRFTHV 772
Query: 707 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 766
++ P ILG+ A + P+ + Q R TY++ G+Q G Y ++ +R+D + +Y +
Sbjct: 773 DV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM 831
Query: 767 PLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 826
PLV T A ++ +P G+N IVA Y GYNQEDSVI++QS IDRG F F YR+
Sbjct: 832 PLVKTIAHNYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTF---YRE 884
Query: 827 EEKKMGTLVKEDFGRPDRSNTMGMRHGS-YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQ 885
E+ ++ + + E FG+PD T ++ G+ Y+KL DG P GT V D+IIGK I
Sbjct: 885 EKVELESDI-ESFGKPDPLITKNLKPGANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 886 DEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 945
+ + + ++Y D S+ E +VD V+ + F +R+R R IGDK SS
Sbjct: 943 E--KDELNKYI--DRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSS 998
Query: 946 RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1005
R G KG + DMP+T +G+ PD+IVNPH+ PSRMT GQ+IE +G A G
Sbjct: 999 RSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVT 1058
Query: 1006 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL-KHMVDD 1064
D T F + V +S+ L + G + G + M+NG TG A IF+GPTY+QRL K ++DD
Sbjct: 1059 DGTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDD 1118
Query: 1065 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVH 1124
+ GP LT QP +G+ GGLR GEME + A GA + E+ D SD +
Sbjct: 1119 RYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISY 1178
Query: 1125 VCEHCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMA 1173
+C +CG AI N ++C C + DI V ++FQ M A
Sbjct: 1179 ICRNCGEPAIYNASHPIYKCMNCDVQADIGMVD-SRRSSIVFQHEMRAA 1226
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 347/1201 (28%), Positives = 547/1201 (45%), Gaps = 136/1201 (11%)
Query: 37 EEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFGQIY 96
E K L++ +DSFD F + + ++ +S + +HN Q YKI F +
Sbjct: 4 ELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYF----EHNSTQ--------YKIRFTDLK 51
Query: 97 LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTET----QDF 152
LS+P + E L+P +R TY+AP + + + + ++ TE Q+
Sbjct: 52 LSRPTRNIVEKEIK-LYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEP 110
Query: 153 TKVF---IGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMS 209
T F +G++PIM++S YC L S + L E E +QGGYFI+NG+EKV+
Sbjct: 111 THTFEVDLGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTK 170
Query: 210 TNHVYVFKK-----RQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIR 264
NH + R P +R + RP + L + G ++ +++
Sbjct: 171 ANHPVALHRKAWTNRGPGYTKNGITIRCV-----RPDRSSITNNLHYIN-DGQTTLRFL- 223
Query: 265 ATLPYIRTE--IPIIIVFRALGFVADKDILEHICY-DFQDTQMMELLRPSLEEAFV--IQ 319
Y R E +P ++ +AL +K+I E+I D ++T + + + SL E + I
Sbjct: 224 ----YRRQEFFLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNIN 279
Query: 320 NQQVALDYIGKR--GATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIH 377
Q+ LDYIG R T IK + + + + H+ + K +I
Sbjct: 280 TQEEVLDYIGSRFRARTQFPPSFSNIKIGRWFINQFVFVHLPNYN----DKYNLLILMIQ 335
Query: 378 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGK--- 434
+L G+ D+ D + + LAG + G + + + +++V K ++ K
Sbjct: 336 KLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSG 395
Query: 435 ----DVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHL 488
D + K I Y LATGN ++ + +G + ++L + +SH
Sbjct: 396 DKLPDALKKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHF 455
Query: 489 RRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 547
R ++ K R+L WG CP TP+G CGL+ +L+ +TV +A P
Sbjct: 456 RSIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPT 515
Query: 548 LE--------FLEEWGTENFEEISPAVIPQATKIFVNGCWVGI--HRDPEMLVKTLRRLR 597
++ FL G + +S Q I ++G +G + E +VK LR LR
Sbjct: 516 VQKAQTLLPSFLAAHGMLPIDMVS-VYQHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLR 574
Query: 598 RRVDVNTEVGVVRDIRLKELR-IYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPED 656
+ E + + + + + G+ S R + R ++ L ++
Sbjct: 575 ---SMGNEPSIPKTMEISYAPPTNVENGQYSGISLFTTGARFM---RPVVNLTSGQN--- 625
Query: 657 GGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGV 716
E I +E+ I++ P E TH E P+ + +
Sbjct: 626 ------------ELIGPQEQLYMEIAVV----------PHEVIKGVTTHIETSPTAMFSL 663
Query: 717 CASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEH 776
A++ PF D+NQSPRN YQ M KQ MG + +Y FR D Y + QKP+V T+
Sbjct: 664 LANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFK 723
Query: 777 LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR-SLFFRSYRDEEKKMGTLV 835
P G NA++A+ +GY+ ED++I+N+S+ +RGF S++ Y D ++ +
Sbjct: 724 FRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFE 783
Query: 836 KED--FGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQAS 893
++ FGRP NT+ + +D DGL G + + P
Sbjct: 784 QKKTFFGRP---NTVVDELDKF--IDTDGLPFVGRLIKPGEPYYTYIRP--------SDG 830
Query: 894 RYTRRDHSISLRHSETGMVDQVLLTTNADG-------LRFVKVRVRSVRIPQIGDKFSSR 946
R +D+ + E ++ V + +G + + V++R R P IGDKFSSR
Sbjct: 831 RQVTKDY----KGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSSR 886
Query: 947 HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1006
HGQKG + + + +MP+T G+ PD+I+NP+A PSRMTIG L+E + GK A GK D
Sbjct: 887 HGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQD 946
Query: 1007 ATPF----TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMV 1062
AT F + +D + L K G+ G E MY+G TG+ IF G YYQRL+HMV
Sbjct: 947 ATAFQFDENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMV 1006
Query: 1063 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYR 1122
DK R G V LTRQP +GR GG+RFGEMERD ++AHGAS L +RL SD +
Sbjct: 1007 KDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMKSSDFAK 1066
Query: 1123 VHVCEHCGLIAIANLKKN-----SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPR 1177
+ VC+ CG KK+ EC+ CK+ I + IPY L EL A+ I +
Sbjct: 1067 IKVCKLCGSTLTIYSKKDYSNQTVSECKSCKSSDSIATISIPYVFTYLVAELAAVNITMK 1126
Query: 1178 M 1178
+
Sbjct: 1127 L 1127
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPA2 PE=3 SV=2
Length = 1196
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 337/1098 (30%), Positives = 520/1098 (47%), Gaps = 140/1098 (12%)
Query: 90 ISFGQIYLSKPMMTESDGETA----TLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE 145
+S Q+ L+KPM +DG TA +FP AR R TY L + + V +DGEE
Sbjct: 91 LSVTQVSLTKPM--SNDGVTAAAERNVFPAEARKRLTTYRGKLLLKLNWSV----NDGEE 144
Query: 146 V-TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV--- 201
+E +D G +P+ML+S+ C L++ S ++L E E + GGYFI+NG EK+
Sbjct: 145 TFSEVRD-----CGPLPVMLQSNRCHLHKMSPQELVEHKEESDELGGYFIVNGIEKLIRM 199
Query: 202 LIAQEKMSTNHVYV-----FKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKG 256
LI Q + NH F R + Y ++R + RP T +L +
Sbjct: 200 LIVQRR---NHPMAIIRPSFANRGTSYSHYGVQIRCV-----RPDQTSQTNVLHYLN--- 248
Query: 257 GSSGQYIRATLPYIRTE--IPIIIVFRALGFVADKDILEHIC-YDFQD---TQMMELLRP 310
GQ + + + E +P++++ +AL +D++I + I D + T +ELL
Sbjct: 249 --DGQ-VTFRFSWRKNEYLVPVVLILKALTDASDREIFDGIVGADTSNSFLTDRLELLLR 305
Query: 311 SLEEAFV-IQNQQVALDYIGKRGATVGVTRDKRIKY--AKEILQKEMLPHVGTGDFCETK 367
++ F + N++ L Y+G + V Y +E+L++ +L H+G + T
Sbjct: 306 GFKKRFPQLLNRRQVLQYLGDKFRVVLQASPDMSDYLVGQELLRRIVLVHLGDEN---TD 362
Query: 368 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 427
K+ ++I +L G D+ D ++ + L G L G + + + ++++ +Q
Sbjct: 363 KSNMLMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIVKEKIEEYLQNIKLQIQ 422
Query: 428 KCVDNGKDVNLQ---FAIKAKT-----ITSGLKYSLATGNWGQANAAGTR--AGVSQVLN 477
V+ G V+ + + + T I S L+Y L+TGN + + +G + V
Sbjct: 423 ADVNRGMPVDFKDRKYMTRVLTRINENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAE 482
Query: 478 RLTYASTLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 536
++ + +SH R ++ + K R+L WG +CP TP+G CGL+ + A
Sbjct: 483 KINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKC 542
Query: 537 YI-TVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGI--HRDPEMLVKTL 593
I T S I L G ++ A P + ++G VG H ++ TL
Sbjct: 543 KISTTQSDVSKIPTLLYSLGVSPAAHVT-AAGPSLCCVQLDGKIVGWCSHEQGRIVADTL 601
Query: 594 R--RLRRRVD---VNTEVGVVRDIRLKE---LRIYTDYGRCSRPLFIVEKQRLLIKKRDI 645
R ++ + D ++ E+G V + + L ++ + R RP+ + L + K+DI
Sbjct: 602 RYWKVEGKTDGLPLDLEIGYVPASKRGQYPGLYLFGGHSRMMRPV-----RYLPLDKQDI 656
Query: 646 IALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTH 705
+ P + + D+ PEE + +TH
Sbjct: 657 VG------PFEQVYMDIAVT-----------------------------PEEIQNNVHTH 681
Query: 706 CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQ 765
E P+ IL + A++ PF D NQSPRN YQ MGKQ MG R D Y L Q
Sbjct: 682 VEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQ 741
Query: 766 KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 825
P+V + P G NA+VA+ Y+GY+ +D++I+N+S+ +RGF +++ +
Sbjct: 742 TPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFSYGTVYKTEK 801
Query: 826 DE---EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP 882
+ + G V + FG T +KLD+DGL G+ V D I
Sbjct: 802 IDLSLSRGRGDPVTQHFG----FGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYF-- 855
Query: 883 ISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNADG----LRFVKVRVRSVRIPQ 938
D+ + T HS SE +++V L + L+++ ++ R R+PQ
Sbjct: 856 ---DDTLNKTKIKTY--HS-----SEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQ 905
Query: 939 IGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 998
IGDKFSSRHGQKG + DMP++ GI PD+I+NPHA PSRMTIG +E + GK
Sbjct: 906 IGDKFSSRHGQKGVCSRKWPTVDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAG 965
Query: 999 AHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1054
A G DATP+T D D L K GY G E MY+G TG L A I++G Y
Sbjct: 966 ALHGIAQDATPWTFSEEDTPADYFGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVY 1025
Query: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERL 1114
YQRL+HMV+DK R GPV LT QP +GR R GG+R GEMERD +I HG S L++RL
Sbjct: 1026 YQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRL 1085
Query: 1115 FDQSDAYRVHVCEHCGLI 1132
+ SD + VC CG I
Sbjct: 1086 LNSSDYTQSAVCRECGSI 1103
>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=acr-2 PE=1 SV=2
Length = 1234
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 347/1208 (28%), Positives = 548/1208 (45%), Gaps = 124/1208 (10%)
Query: 5 DYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES 64
D+D E + E+ + T A+ + A V ++SF+ ++ + + +
Sbjct: 12 DWDVEFNQVRREKLFRDPPTDRTAYPALQA------AVDPHIESFNALFRDDGKPSLLDH 65
Query: 65 ADIEIRPESQHNPGQQSDF-AETIYKISFGQIYLSKPMMTESD--GETATLFPKAARLRN 121
A EI ++ + +++D + I + I L K + ++ + +FP R R+
Sbjct: 66 ALAEIGTKTFLDGDERADPQGKNKLTIRYKSIELQKSQVPPTNRWAKNREIFPAECRERH 125
Query: 122 LTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 181
++Y L R+ +DGE +F + +G++PIM++S+ C L NS L
Sbjct: 126 VSYRGKLSATFEYRI----NDGEP----HEFVRE-LGQMPIMVKSNKCHLQNNSPAQLVA 176
Query: 182 LGECPYDQGGYFIINGSEKV----LIAQEKMSTNHVY-VFKKRQPNKYAYVAEVRSMAES 236
E + GGYFI+NG EK+ L+ + V F+ R + Y +RS+
Sbjct: 177 RKEESEELGGYFIVNGIEKLIRMLLVNRRNFPLAIVRPSFQNRGASYTPYGIIMRSV--- 233
Query: 237 QNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC 296
RP T +L S G + ++ Y+ IP++++ +AL D++I E +
Sbjct: 234 --RPDETSQTNVLHYLS-DGNVTFRFSWRKNEYL---IPVMMIMKALVETNDREIFEGLV 287
Query: 297 YDFQD--------TQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKY--A 346
Q T +ELL + ++ + Q Y+G++ V D Y
Sbjct: 288 GPPQSKGVANTFLTDRVELLLRTYKKYGLYSKTQTRA-YLGQKFRVVLGVPDTMSDYEVG 346
Query: 347 KEILQKEMLPHVGTGDFCETKKAYYFG---YIIHRLLLCALGRRAEDDRDHYGNKRLDLA 403
E L+K +L H+G+ D E + A F ++ +L G A D+ D N+ + L
Sbjct: 347 TEFLRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLG 406
Query: 404 GPLLGGLFR-MLFRKLTRDVRAYVQKCVDNGKDVNLQ------------FAIKAKTITSG 450
G L G + + L LT RA ++ + V+ Q F + I
Sbjct: 407 GFLYGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDTFLKDFPIAIFRRANENIGQS 466
Query: 451 LKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQL 507
L+Y L+TGN + + +G + V +L + +SH R ++ + K R+L
Sbjct: 467 LEYFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKL 526
Query: 508 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA-AYPILEFLEEWGTENFEEISPAV 566
WG +CP TP+G CGL+ +LA I S A I E G N IS A
Sbjct: 527 LPESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTESVDASTISRLAFELGVVN---ISSAA 583
Query: 567 IPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 626
++ + ++G VG E K++ R VN E GV ++L+ + G
Sbjct: 584 TSESVVVMLDGRIVGWCTPEE--CKSIAETLRYWKVNGENGV--PLQLEIGYVPPSNGGS 639
Query: 627 SRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIN 686
L++ + +++ + LQ+ + ++ +E+ I+ T
Sbjct: 640 YPGLYMSSQPARMVRPVKYLPLQKED-----------------FVGPQEQPYMSIACTEQ 682
Query: 687 DLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 746
+++ P ++ TH E P+ IL + A++ PF D NQSPRN YQ MGKQ MG
Sbjct: 683 EVI-----PGDS-----THVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTP 732
Query: 747 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 806
T R D Y L Q P+V F P G+NA+VA+ Y+GY+ +D++I+
Sbjct: 733 ATALAHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIL 792
Query: 807 NQSSIDRGFFRSLFFRSYR-----DEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDD 861
N+S+ +RGF +++ + D + + + FG S +R + D LD+D
Sbjct: 793 NKSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNST---IRESTRDMLDND 849
Query: 862 GLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVDQVLLTTNA 921
GL G + DVI T +S D GQ H + SE V++V +
Sbjct: 850 GLPRVGRLLREGDVICAWHT-VSAD-YNGQLVNRDGVTHYERYKDSEDAFVEEVRVIGAD 907
Query: 922 DG---LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 978
+G L+ V +++R R P IGDKFSSRHGQKG + + DMP++ GI PD+I+NPH
Sbjct: 908 NGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSETGIQPDVIINPH 967
Query: 979 AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKCGYQMRGFET 1034
A PSRMTIG +E + GK A G D+TPF + D L K GY G E
Sbjct: 968 AFPSRMTIGMFVESLAGKAGALHGLAQDSTPFKFDEQNTAGDYFGHQLMKAGYNYHGNEP 1027
Query: 1035 MYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFG 1094
+Y+G TG A I++G YYQRL+HMV+DK R GPV T QP +GR + GG+R G
Sbjct: 1028 LYSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVG 1087
Query: 1095 EMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSF----------EC 1144
EMERD ++AHG S L++RL + SD + +C CG + F C
Sbjct: 1088 EMERDALLAHGTSFLLQDRLLNCSDYSKSWMCRQCGSFLSTQPTVSPFIGKRKAVSTVRC 1147
Query: 1145 RGCKNKTD 1152
R C + D
Sbjct: 1148 RNCAVRLD 1155
>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii GN=POLR1B
PE=2 SV=1
Length = 1136
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 338/1131 (29%), Positives = 501/1131 (44%), Gaps = 155/1131 (13%)
Query: 110 ATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
+++P R R TY L D++ V I KG K F+G VPIM++S
Sbjct: 96 VSVYPAECRGRRCTYRGKLTADISWAVNGISKG-----------IIKQFLGYVPIMVKSK 144
Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKV--LIAQEKMSTNHVYV---FKKRQPN 222
C LY + L E E + GGYFIING EKV ++ + + V +K R P
Sbjct: 145 LCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPG 204
Query: 223 KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVFR 281
Y + + E + V M G +I R L ++ P+ +
Sbjct: 205 YTHYGVSMHCVREEHSA------VNMNLHYLENGTVMLNFIYRKELFFL----PLGFALK 254
Query: 282 ALGFVADKDILEHICYDFQDTQMM-----ELLRPSLEEAFVIQNQQVALDYIGK-RGATV 335
AL +D I + + +D + ++LR +EE Q Q L+Y+G+ +
Sbjct: 255 ALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQ--VLNYLGECFRVKL 312
Query: 336 GVTRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 394
V + A E L + + H+ + T+K Y + +L A G ED+ D
Sbjct: 313 NVPDWYPNEQAAEFLFNQCICIHLKS----NTEKFYMLCLMTRKLFALAKGECMEDNPDS 368
Query: 395 YGNKRLDLAGPLLGGLFRMLFRKLTRDVR-AYVQKCVDNGKDVNLQFAIKAKT----ITS 449
N+ + G L + ++ A+ +K +N ++ T +T
Sbjct: 369 LVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGIDLTK 428
Query: 450 GLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK---- 503
+Y ATGN G +G+ V ++L + LSH R ++ R AK
Sbjct: 429 PFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVH----RGADFAKMRTT 484
Query: 504 -PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGSAAYPILEFLEEWGTENF 559
R+L WG +CP TP+G+ CGL+ +L + + V +A+ P L L G
Sbjct: 485 TVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPAL--LCNLGVTPI 542
Query: 560 EEISPAVIPQATKIFVNGCWVGIHRDPEM---LVKTLRRLR----RRVDVNTEVGVV--- 609
+ + + ++G VG D E+ + +LR + +R+ TEV ++
Sbjct: 543 DGAPHRSYSECYPVLLDGVMVG-WVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPMT 601
Query: 610 -RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFI 668
+ L ++T R RP+ Q L + K ++I G +
Sbjct: 602 GKPSLYPGLFLFTTPCRLVRPV-----QNLELGKEELI-------------------GTM 637
Query: 669 EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
E I + + +E +A TH E+ P +L V A+ IPF DHNQ
Sbjct: 638 EQI----------------FMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQ 681
Query: 729 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
SPRN YQ MGKQ MG + YQ R D Y L PQ PLV ++ P G NA
Sbjct: 682 SPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNA 741
Query: 789 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
IVA+ Y+GY+ ED++I+N++S +RGF Y+ E + +K+ D S
Sbjct: 742 IVAVISYTGYDMEDAMIVNKASWERGFAHG---SVYKSEFIDLSEKIKQG----DSSLVF 794
Query: 849 GMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLR 905
GM+ G KLDDDGL G ++ D + T + +
Sbjct: 795 GMKPGDPRILQKLDDDGLPFIGAKLQ------------YGDPYYSYLNLNTGESFVMYYK 842
Query: 906 HSETGMVDQVLLTTNADG---LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
E +VD + + +N G + V + +R R P IGDKF+SRHGQKG + + EDM
Sbjct: 843 SKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDM 902
Query: 963 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT----DVTVDNI 1018
P+T G+ PDI+ NPH PSRMTIG LIE + GK AA G DATPF + ++
Sbjct: 903 PFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYF 962
Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
+ L GY G E +Y+G +G L A IF+G YYQRL+HMV DK R G +T
Sbjct: 963 GEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVT 1022
Query: 1079 RQPAEGRSRDGGLRFGEMERDCMIAHGASHF-LKERLFDQSDAYRVHVCEHCGLI----- 1132
QP GR+ GG+RFGEMERD ++AHG S F L +RLF+ SD HVC CG +
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFFLLHDRLFNCSDRSVAHVCVKCGSLLSPLL 1082
Query: 1133 -----AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
+ + ++ + C C I V +PY + EL AM I ++
Sbjct: 1083 EKPPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1133
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus GN=Polr1b
PE=2 SV=2
Length = 1135
Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust.
Identities = 335/1135 (29%), Positives = 509/1135 (44%), Gaps = 166/1135 (14%)
Query: 111 TLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSY 168
++P R R TY L D++ V + KG K F+G VPIM++S
Sbjct: 97 NVYPAECRGRKSTYRGRLTADISWAVNGVPKG-----------IIKQFLGYVPIMVKSKL 145
Query: 169 CTLYQNSEKDLTELGECPYDQGGYFIINGSEKVL----IAQEKMSTNHVYV-FKKRQPNK 223
C LY + L E E + GGYFIING EKV+ + + V +K R
Sbjct: 146 CNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGY 205
Query: 224 YAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVFRA 282
+ +R + E + V M G +I R L ++ P+ +A
Sbjct: 206 TQFGVSMRCVREEHSA------VNMNLHYVENGTVMLNFIYRKELFFL----PLGFALKA 255
Query: 283 LGFVADKDILEHICY-----DFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGV 337
L +D I + + F + ++LR +EE +Q+ L+Y+G+
Sbjct: 256 LVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEG--CHSQKQVLNYLGECFRVKLS 313
Query: 338 TRD--KRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHY 395
D ++ A+ +L + + H+ + T K Y + +L A G +D+ D
Sbjct: 314 LPDWYPNVEAAEFLLNQCICIHLQS----NTDKFYLLCLMTRKLFALARGECMDDNPDSL 369
Query: 396 GNKRLDLAGPLLGGLFRMLFR----------KLTRDVRAYVQKCVDNGKDVNLQFAIKAK 445
N+ ++ P G LF M + K+ D RA N +++ F++ +
Sbjct: 370 VNQ--EVLSP--GQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSMGTE 425
Query: 446 TITSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
+T +Y LATGN G +G+ V ++L + LSH R ++ R AK
Sbjct: 426 -LTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVH----RGAAFAK 480
Query: 504 -----PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGSAAYPILEFLEEWG 555
R+L WG +CP TP+G CGL+ +L + + V +A+ P L L G
Sbjct: 481 MRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPAL--LCGLG 538
Query: 556 TENFEEISPAVIPQATKIFVNGCWVG-IHRD--PEMLVKTLRRLR----RRVDVNTEVGV 608
+ + ++G VG + +D PE + TLRR + +R+ EV +
Sbjct: 539 VTPVDTAPCRPYSDCYPVLLDGVMVGWVDKDLAPE-VADTLRRFKVLREKRIPPWMEVAL 597
Query: 609 V----RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVA 664
+ + L ++T R RP+ Q L + + ++I
Sbjct: 598 IPMTGKPSLYPGLFLFTTPCRLVRPV-----QNLELGREELIG----------------- 635
Query: 665 KGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFP 724
TM + +N + +E + TH E+ P +L V A+ IPF
Sbjct: 636 --------------TMEQLFMN----VAIFEDEVFGGISTHQELFPHSLLSVIANFIPFS 677
Query: 725 DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA 784
DHNQSPRN YQ MGKQ MG + YQ R D Y L PQ PLV + P
Sbjct: 678 DHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPI 737
Query: 785 GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS-YRDEEKKMGTLVKEDFGRPD 843
G NAIVA+ Y+GY+ ED++I+N++S +RGF ++S + D + E F + +
Sbjct: 738 GTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID--------LSEKFKQGE 789
Query: 844 RSNTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDH 900
+ G++ G KLDDDGL G ++ D ++ + +G Y +++
Sbjct: 790 DNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDPYYSY---LNLNTGEGFVVYYKSKEN 846
Query: 901 SISLRHSETGMVDQVLLTTNADG---LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 957
+ VD + + +N G + + + VR R P IGDKF+SRHGQKG + +
Sbjct: 847 CV---------VDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLW 897
Query: 958 TQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT----DV 1013
EDMP+T G+ PDI+ NPH PSRMTIG LIE + GK AA G DATPF +
Sbjct: 898 PAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENS 957
Query: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073
++ + L GY G E +Y+G +G L A IF+G YYQRL+HMV DK R G
Sbjct: 958 ALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGA 1017
Query: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI- 1132
+T QP GR+ GG+RFGEMERD ++AHG S L +RLF+ SD H+C CG +
Sbjct: 1018 RDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLL 1077
Query: 1133 ---------AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
+ + ++ + C C I V +PY + EL AM I ++
Sbjct: 1078 SPLLEKPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1132
>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B
PE=1 SV=2
Length = 1135
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 335/1130 (29%), Positives = 495/1130 (43%), Gaps = 154/1130 (13%)
Query: 110 ATLFPKAARLRNLTYSAPLYVDVTKRV--IKKGHDGEEVTETQDFTKVFIGKVPIMLRSS 167
A ++P R R TY L D+ V I KG K F+G VPIM++S
Sbjct: 96 ANVYPAECRGRRSTYRGKLTADINWAVNGISKG-----------IIKQFLGYVPIMVKSK 144
Query: 168 YCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYV-----FKKRQPN 222
C L + L E E + GGYFIING EKV+ N +K R P
Sbjct: 145 LCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPG 204
Query: 223 KYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYI-RATLPYIRTEIPIIIVFR 281
Y + + E + V M G +I R L ++ P+ +
Sbjct: 205 YTQYGVSMHCVREEHSA------VNMNLHYLENGTVMLNFIYRKELFFL----PLGFALK 254
Query: 282 ALGFVADKDILEHICYDFQDTQMM-----ELLRPSLEEAFVIQNQQVALDYIGK-RGATV 335
AL +D I + + +D + ++LR +EE Q Q L+Y+G+ +
Sbjct: 255 ALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQ--VLNYLGECFRVKL 312
Query: 336 GVTRDKRIKYAKEILQKEMLP-HVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDH 394
V + A E L + + H+ + T+K Y + +L A G ED+ D
Sbjct: 313 NVPDWYPNEQAAEFLFNQCICIHLKS----NTEKFYMLCLMTRKLFALAKGECMEDNPDS 368
Query: 395 YGNKRLDLAGPLLGGLFR------MLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTIT 448
N+ + G L + ++ K+ D +A + V D ++ +T
Sbjct: 369 LVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQ-KTSVSMNTDNLMRIFTMGIDLT 427
Query: 449 SGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK--- 503
+Y ATGN G +G+ V ++L + LSH R ++ R AK
Sbjct: 428 KPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVH----RGADFAKMRT 483
Query: 504 --PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGSAAYPILEFLEEWGTEN 558
R+L WG +CP TP+G+ CGL+ +L + + V +A+ P L L G
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPAL--LCNLGVTP 541
Query: 559 FEEISPAVIPQATKIFVNGCWVG-IHRD-PEMLVKTLRRLR----RRVDVNTEVGVV--- 609
+ + + ++G VG + +D + +LR + +R+ EV ++
Sbjct: 542 IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMT 601
Query: 610 -RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFI 668
+ L ++T R RP+ Q L + K ++I G +
Sbjct: 602 GKPSLYPGLFLFTTPCRLVRPV-----QNLALGKEELI-------------------GTM 637
Query: 669 EYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQ 728
E I + + +E +A TH E+ P +L V A+ IPF DHNQ
Sbjct: 638 EQI----------------FMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQ 681
Query: 729 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 788
SPRN YQ MGKQ MG + YQ R D Y L PQ PLV ++ P G NA
Sbjct: 682 SPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNA 741
Query: 789 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 848
IVA+ Y+GY+ ED++I+N++S +RGF Y+ E + +K+ D S
Sbjct: 742 IVAVISYTGYDMEDAMIVNKASWERGFAHG---SVYKSEFIDLSEKIKQG----DSSLVF 794
Query: 849 GMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLR 905
G++ G KLDDDGL G ++ D + T + +
Sbjct: 795 GIKPGDPRVLQKLDDDGLPFIGAKLQ------------YGDPYYSYLNLNTGESFVMYYK 842
Query: 906 HSETGMVDQVLLTTNADG---LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 962
E +VD + + +N G + V + +R R P IGDKF+SRHGQKG + + EDM
Sbjct: 843 SKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDM 902
Query: 963 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT----DVTVDNI 1018
P+T G+ PDI+ NPH PSRMTIG LIE + GK AA G DATPF + ++
Sbjct: 903 PFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYF 962
Query: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078
+ L GY G E +Y+G +G L A IF+G YYQRL+HMV DK R G +T
Sbjct: 963 GEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVT 1022
Query: 1079 RQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI------ 1132
QP GR+ GG+RFGEMERD ++AHG S L +RLF+ SD HVC CG +
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082
Query: 1133 ----AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
+ + ++ + C C I V +PY + EL AM I ++
Sbjct: 1083 KPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1132
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 327/1127 (29%), Positives = 521/1127 (46%), Gaps = 139/1127 (12%)
Query: 61 VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATL----FPKA 116
+ E + +P + + S + +S Q+ ++KPM +DG ++ + +P
Sbjct: 68 IGEKVIFDGKPLNSEDEISNSGYLGNKLSVSVEQVSIAKPM--SNDGVSSAVERKVYPSE 125
Query: 117 ARLRNLTYSAPLYVDVTKRVIKKGHDGEE-VTETQDFTKVFIGKVPIMLRSSYCTLYQNS 175
+R R +Y L + + V ++GEE + E +D G +P+ML+S+ C L + S
Sbjct: 126 SRQRLTSYRGKLLLKLKWSV----NNGEENLFEVRD-----CGGLPVMLQSNRCHLNKMS 176
Query: 176 EKDLTELGECPYDQGGYFIINGSEKV---LIAQEKMSTNHVYV-----FKKRQPNKYAYV 227
+L + E + GGYFI+NG EK+ LI Q + NH F R + Y
Sbjct: 177 PYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRR---NHPMAIIRPSFANRGASYSHYG 233
Query: 228 AEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTE--IPIIIVFRALGF 285
++RS+ RP T +L + GQ + + + E +P++++ +AL
Sbjct: 234 IQIRSV-----RPDQTSQTNVLHYLN-----DGQ-VTFRFSWRKNEYLVPVVMILKALCH 282
Query: 286 VADKDILEHIC-YDFQD---TQMMELLRPSLEEAFV-IQNQQVALDYIGKRGATV--GVT 338
+D++I + I D +D T +ELL ++ + +QN+ L Y+G + V
Sbjct: 283 TSDREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASP 342
Query: 339 RDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNK 398
++ +E+L + +L H+G + + F +I +L G + D+ D ++
Sbjct: 343 DQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLF--MIRKLYSLVAGECSPDNPDATQHQ 400
Query: 399 RLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQ--------FAIKAKTITSG 450
+ L G L G + + + +++ A V+ ++ G +N + + I S
Sbjct: 401 EVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSK 460
Query: 451 LKYSLATGNWGQANAAGTR--AGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQL 507
++Y L+TGN + + +G + V ++ + +SH R ++ + K R+L
Sbjct: 461 MQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKL 520
Query: 508 HNSQWGMMCPAETPEGQACGLVKNLALMVYI-TVGSAAYPILEFLEEWGTENFEEISPAV 566
WG +CP TP+G CGL+ + A I T S I L G + A
Sbjct: 521 LPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPASH-TFAA 579
Query: 567 IPQATKIFVNGCWVGI--HRDPEMLVKTLRRLRRR-----VDVNTEVGVVRDI---RLKE 616
P + ++G +G H +++ TLR + + ++ E+G V +
Sbjct: 580 GPSLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPG 639
Query: 617 LRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYIDTEEE 676
L ++ + R RP+ + L + K DI+ E+
Sbjct: 640 LYLFGGHSRMLRPV-----RYLPLDKEDIVG-------------------------PFEQ 669
Query: 677 ETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS 736
I++T P+E + +TH E P+ IL + A++ PF D NQSPRN YQ
Sbjct: 670 VYMNIAVT----------PQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQC 719
Query: 737 AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS 796
MGKQ MG R D Y L Q P+V + P G NA+VA+ Y+
Sbjct: 720 QMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYT 779
Query: 797 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE---EKKMGTLVKEDFGRPDRSNTMGMRHG 853
GY+ +D++I+N+S+ +RGF +++ + + + G + + FG +
Sbjct: 780 GYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDE----WPKE 835
Query: 854 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSETGMVD 913
+KLD+DGL GT V D I D+ + T HS SE ++
Sbjct: 836 WLEKLDEDGLPYIGTYVEEGDPICAYF-----DDTLNKTKIKTY--HS-----SEPAYIE 883
Query: 914 QVLLTTNADG----LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 969
+V L + L+ V ++ R R PQIGDKFSSRHGQKG + DMP++ GI
Sbjct: 884 EVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGI 943
Query: 970 TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT----DVTVDNISKALHKC 1025
PDII+NPHA PSRMTIG +E + GK A G D+TP+ D D + L K
Sbjct: 944 QPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAKA 1003
Query: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1085
GY G E MY+G TG L A I++G YYQRL+HMV+DK R GPV LT QP +GR
Sbjct: 1004 GYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGR 1063
Query: 1086 SRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLI 1132
R GG+R GEMERD +I HG S L++RL + SD + VC CG I
Sbjct: 1064 KRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRECGSI 1110
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila melanogaster
GN=RpI135 PE=2 SV=2
Length = 1129
Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust.
Identities = 331/1204 (27%), Positives = 537/1204 (44%), Gaps = 180/1204 (14%)
Query: 45 QLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFAETIYKISFG--QIYLSKPMM 102
+DSFDE + + D SA I P +P + KIS I+++KP +
Sbjct: 39 HVDSFDEMLTVGL----DNSAKHMI-PNHWLSPAGE--------KISMKVESIWIAKPKV 85
Query: 103 TES--DGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKV 160
+ D T ++P +R +++YS V + V +G + T + +G+V
Sbjct: 86 PQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSV-----NGVQKTPIN----MDLGEV 136
Query: 161 PIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNH-VYVFKKR 219
PIMLRS C L Q + +++ + GE + GG F+I G+EK++ NH + V +
Sbjct: 137 PIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSS 196
Query: 220 QPNKYAYVAEVRSMAESQNRPPSTM--FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPII 277
++ +++ + ++ S++ V L+ +AK S +++ L Y+ P+
Sbjct: 197 WKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFS--HVK-RLSYV----PVC 249
Query: 278 IVFRALGFVADKDILEHICYDFQDTQM-MELLRPSLEEAFVIQNQQVALDYIGKRGATVG 336
++ + L D++I + ++ Q + ++ L E +QN+ V K + +G
Sbjct: 250 LILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLRE---VQNENVYTHAQCK--SFIG 304
Query: 337 VTRDKRIKYAKE----------ILQKEMLPHVGTGDFCETKKAYYFGYIIHRLLLCALGR 386
R E IL++ ++ H+ T + K ++I +L CA G+
Sbjct: 305 NLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYE----DKFQLIVFMIQKLFQCAQGK 360
Query: 387 RAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN-----GKDVNLQFA 441
++ D + + L G L VR +QK + + V Q
Sbjct: 361 YKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCM 420
Query: 442 IKAKTITSGLKYSLATGNWGQANAAGTRAG-----VSQVLNRLTYASTLSHLRRLN-SPI 495
+A + ++ LATGN G +++ +NR+ Y +SH R ++
Sbjct: 421 RQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRY---MSHFRAIHRGSY 477
Query: 496 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 555
+ + RQL WG +CP TP+G CGL+ +L L I++ + +
Sbjct: 478 FTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHL- 536
Query: 556 TENFEEISPAVIPQATK---------IFVNGCWVG-IHR-DPEMLVKTLR--RLRRRVDV 602
I ++P + + +F++G +G IH+ + E +V LR ++ +
Sbjct: 537 ------IDMGMMPLSNRRYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQ 590
Query: 603 NTEVGVV---RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGW 659
E+G + ++ + L I T R RP++ ++ +R
Sbjct: 591 MMEIGFIPFKKNGQFPGLYIATGPARMMRPVWNLKWKR---------------------- 628
Query: 660 HDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCAS 719
+EYI T E+ I+ + +E Y D TH E+ + + A+
Sbjct: 629 --------VEYIGTLEQLYMEIA----------IDAKEMYPDFTTHLELAKTHFMSNLAN 670
Query: 720 IIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHF 779
+IP PD+NQSPRN YQ MGKQ MG N+ + Y L P PL +++
Sbjct: 671 LIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQL 730
Query: 780 RQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDF 839
G NAIVA+ Y+GY+ ED++I+N+++ +RGF G++ K F
Sbjct: 731 DDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGF--------------AYGSIYKTKF 776
Query: 840 GRPDRSNTMGMRHGSYDKL----DDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRY 895
D+ ++ RH +L D DGL PG+++S G D G+ + Y
Sbjct: 777 LTLDKKSSYFARHPHMPELIKHLDTDGLPHPGSKLS-----YGSPLYCYFD---GEVATY 828
Query: 896 TRRDHSISLRHSETGMVDQV--LLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953
+ + E +V+ + L + + + V + +R R IGDKF+SR GQKG
Sbjct: 829 K----VVKMDEKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGIC 884
Query: 954 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF--- 1010
Y ED+P+T G+ PDI+ NPH PSRMTI +IE + GK AA G DATPF
Sbjct: 885 SQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFS 944
Query: 1011 -TDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 1069
+ +D K L GY G E +Y+G GR +TA IF G +YQRL+HMV DK R
Sbjct: 945 EENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1004
Query: 1070 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHC 1129
G V+ T QP +GR R GG+RFGEMERD +I+HGA+ L++RLF SD VC C
Sbjct: 1005 STGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKC 1064
Query: 1130 GLIA-----------IANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178
G I L CR C + + + + IP++ K L EL ++ I R
Sbjct: 1065 GSILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINARF 1124
Query: 1179 LTKE 1182
E
Sbjct: 1125 KLNE 1128
>sp|O27123|RPOB2_METTH DNA-directed RNA polymerase subunit B'' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB2 PE=3 SV=1
Length = 519
Score = 342 bits (878), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 195/549 (35%), Positives = 318/549 (57%), Gaps = 63/549 (11%)
Query: 25 QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFA 84
++ AW ++ A+F++ LV + S+++F+ N +QEI+D S IE+
Sbjct: 8 KKSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIELE-------------- 53
Query: 85 ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 144
+ Y++ G++ + KP + E+DG + ++P ARLRNLTYSA + +++ R++K+G G
Sbjct: 54 QGKYRVETGKVSIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM--RLLKEG--GP 109
Query: 145 EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 204
E +F KV+IG++P+ML+S C L+ S K+L E GE P D GGYFI+NGSE+ ++
Sbjct: 110 ET----EFEKVYIGELPVMLKSEICHLHGLSRKELMEKGEDPADPGGYFIVNGSERSIVT 165
Query: 205 QEKMSTNHVY---VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 261
E+++ N + + ++ + A V +RS F +S K +G
Sbjct: 166 MEEIAPNKIILERIGEEDENRARAIVTSIRSG-----------FRARISLEYRKPRKTGV 214
Query: 262 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ-------DTQM----MELLRP 310
++R + PY+ EIP++I+ RALG D++I+ I DF D Q+ + L +
Sbjct: 215 FLRISFPYVPGEIPLVILLRALGLATDQEIITSISDDFNYQMIAADDIQVSLDRLNLNKK 274
Query: 311 SLEE-------AFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDF 363
++E ++I++ A+ YIG R A G+T D RIK A++++ + +LPH+GT
Sbjct: 275 EMKELDEEDRREYLIRS---AIKYIGNRVAK-GMTEDYRIKRAEDVIDRYLLPHIGTEPE 330
Query: 364 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 423
+KA Y + LL G R D+DHY NKRL ++G L+ L R+ F L+RD+
Sbjct: 331 KRLEKATYLAEMTEMLLQVISGERRPHDKDHYTNKRLRVSGDLMEDLLRVAFTSLSRDMS 390
Query: 424 AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 483
+++ + GK+ +++ A+++ +T LK+++ATGNW G RAGVSQ+L+R +Y
Sbjct: 391 YQLERSLARGKEPSVKQAVRSDVLTENLKHAIATGNW-----VGGRAGVSQLLDRTSYMG 445
Query: 484 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 543
TLSH+RR+ SP+ R + R LH +Q+G +CP ETPEG CGLVKNLAL+ I+ GS
Sbjct: 446 TLSHMRRVVSPLSRSQPHFEARDLHPTQFGKICPNETPEGPNCGLVKNLALLAKISEGSD 505
Query: 544 AYPILEFLE 552
A + E ++
Sbjct: 506 ASEVEEVIK 514
>sp|P09844|RPOB2_METTW DNA-directed RNA polymerase subunit B'' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB2 PE=3 SV=1
Length = 515
Score = 336 bits (862), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 195/554 (35%), Positives = 317/554 (57%), Gaps = 60/554 (10%)
Query: 25 QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQSDFA 84
++ AW ++ A+F++ LV + S+++F+ N +QEI+D S IE+ GQ
Sbjct: 2 KKSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL------EQGQ----- 50
Query: 85 ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGE 144
Y + G++ + KP + E+DG + ++P ARLRNLTYSA + +++ R++K+G G
Sbjct: 51 ---YTVETGKVTIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM--RLLKEG--GS 103
Query: 145 EVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 204
E +F KV IG++P+ML+S C L+ +L E GE P D GGYFI+N SE+ ++
Sbjct: 104 ET----EFEKVHIGELPVMLKSEICHLHGLGRDELIEKGEDPADLGGYFIVNASERSIVT 159
Query: 205 QEKMSTNHVY---VFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQ 261
E+++ N + + ++ + A V +RS F +S K +G
Sbjct: 160 MEEIAPNKIILERIGEEDEKRARAIVTSIRSG-----------FRARISLEYRKPRKTGV 208
Query: 262 YIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMM--ELLRPSLEEAFVIQ 319
++R + PY+ E+P++I+ RALG D++I+ I DF + QM+ + ++ SL++ +
Sbjct: 209 FLRISFPYVPGELPLVILLRALGLATDQEIITSISDDF-NYQMIAADDIQVSLDKLKLDS 267
Query: 320 NQ---------------QVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFC 364
++ + A+ YIG R A G+T D RIK A++++ + +LPH+GT
Sbjct: 268 DKMEEEMDEEERREYLIRSAIKYIGNRVAK-GMTEDYRIKRAEDVIDRYLLPHIGTEPDK 326
Query: 365 ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 424
+KA Y + LL G R D+DHY NKRL ++G L+ LFR+ F LTRD+
Sbjct: 327 RLEKAVYLAEMTEMLLQVISGERKPHDKDHYTNKRLRVSGDLMEDLFRVAFTSLTRDMSY 386
Query: 425 YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST 484
+++ + GK+ +++ A+++ ++ LK+++ATGNW G RAGVSQ+L+R +Y T
Sbjct: 387 RLERSLARGKEPSVKQAVRSDVLSENLKHAIATGNW-----VGGRAGVSQLLDRTSYMGT 441
Query: 485 LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA 544
LSH+RR+ SP+ R + R LH +Q+G +CP ETPE CGLVKNLALM I+ GS
Sbjct: 442 LSHMRRVVSPLSRSQPHFEARDLHPTQFGKICPNETPESPNCGLVKNLALMAKISEGSDP 501
Query: 545 YPILEFLEEWGTEN 558
I E +++ G N
Sbjct: 502 DEIEEVIKKMGVIN 515
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,989,329
Number of Sequences: 539616
Number of extensions: 19572442
Number of successful extensions: 74876
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 65612
Number of HSP's gapped (non-prelim): 5809
length of query: 1195
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1066
effective length of database: 121,958,995
effective search space: 130008288670
effective search space used: 130008288670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)