Query 000998
Match_columns 1194
No_of_seqs 887 out of 5687
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 05:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 5E-73 1.7E-77 756.7 51.6 214 816-1054 1076-1299(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 2.2E-67 7.6E-72 700.7 57.0 214 816-1054 1030-1253(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 8.3E-58 2.8E-62 562.2 33.8 188 844-1056 371-560 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 3.3E-57 1.1E-61 552.0 34.8 188 844-1056 301-490 (538)
5 3ozx_A RNAse L inhibitor; ATP 100.0 4E-56 1.4E-60 540.6 33.3 202 844-1068 283-486 (538)
6 3ux8_A Excinuclease ABC, A sub 100.0 3.7E-55 1.3E-59 551.5 36.0 214 147-395 30-296 (670)
7 2iw3_A Elongation factor 3A; a 100.0 2.9E-55 9.8E-60 554.4 33.9 183 148-395 448-633 (986)
8 3j16_B RLI1P; ribosome recycli 100.0 1.8E-54 6.3E-59 531.1 33.1 201 843-1068 361-568 (608)
9 3tui_C Methionine import ATP-b 100.0 7.4E-42 2.5E-46 391.5 26.8 218 816-1054 24-248 (366)
10 3pih_A Uvrabc system protein A 100.0 6.6E-41 2.3E-45 424.1 37.2 196 844-1054 599-897 (916)
11 3tif_A Uncharacterized ABC tra 100.0 1.9E-41 6.4E-46 370.7 27.6 204 842-1055 18-230 (235)
12 3gfo_A Cobalt import ATP-bindi 100.0 2.8E-41 9.6E-46 376.4 26.3 215 817-1055 8-229 (275)
13 3rlf_A Maltose/maltodextrin im 100.0 2.1E-41 7.2E-46 390.4 26.0 204 840-1055 14-219 (381)
14 3fvq_A Fe(3+) IONS import ATP- 100.0 1.3E-41 4.3E-46 389.8 23.6 205 839-1055 14-224 (359)
15 2olj_A Amino acid ABC transpor 100.0 4.2E-41 1.4E-45 372.8 26.2 213 817-1054 25-243 (263)
16 3tui_C Methionine import ATP-b 100.0 4.5E-41 1.5E-45 385.0 27.0 207 147-396 40-252 (366)
17 2pcj_A ABC transporter, lipopr 100.0 6E-41 2.1E-45 364.2 26.1 201 840-1053 15-222 (224)
18 1b0u_A Histidine permease; ABC 100.0 4.4E-41 1.5E-45 373.7 25.1 203 840-1054 17-237 (262)
19 2r6f_A Excinuclease ABC subuni 100.0 4.5E-40 1.5E-44 412.1 34.8 195 844-1054 639-937 (972)
20 1vpl_A ABC transporter, ATP-bi 100.0 8.3E-41 2.8E-45 369.3 25.0 203 840-1054 26-230 (256)
21 3fvq_A Fe(3+) IONS import ATP- 100.0 2E-40 7E-45 379.8 27.6 206 148-396 17-227 (359)
22 1g6h_A High-affinity branched- 100.0 6.5E-41 2.2E-45 371.7 22.7 206 840-1054 18-237 (257)
23 1z47_A CYSA, putative ABC-tran 100.0 1.2E-40 4.2E-45 382.0 24.7 202 841-1054 27-230 (355)
24 3rlf_A Maltose/maltodextrin im 100.0 3E-40 1E-44 380.8 27.2 206 148-396 16-222 (381)
25 2yyz_A Sugar ABC transporter, 100.0 1.8E-40 6.3E-45 381.6 24.6 204 840-1055 14-219 (359)
26 2it1_A 362AA long hypothetical 100.0 2.2E-40 7.7E-45 381.3 25.1 203 840-1054 14-218 (362)
27 4g1u_C Hemin import ATP-bindin 100.0 1.5E-40 5E-45 369.8 22.5 212 817-1055 12-233 (266)
28 1g29_1 MALK, maltose transport 100.0 3.3E-40 1.1E-44 382.2 25.9 203 840-1054 14-224 (372)
29 1ji0_A ABC transporter; ATP bi 100.0 2.6E-40 9E-45 363.1 23.4 202 840-1054 17-223 (240)
30 3tif_A Uncharacterized ABC tra 100.0 8.4E-40 2.9E-44 357.6 25.4 208 147-395 17-232 (235)
31 2vf7_A UVRA2, excinuclease ABC 100.0 3.6E-39 1.2E-43 405.1 34.6 195 844-1054 512-822 (842)
32 1v43_A Sugar-binding transport 100.0 3.4E-40 1.2E-44 381.1 22.9 203 840-1054 22-226 (372)
33 1oxx_K GLCV, glucose, ABC tran 100.0 2E-40 6.9E-45 381.7 20.9 200 844-1055 20-226 (353)
34 2d2e_A SUFC protein; ABC-ATPas 100.0 7E-40 2.4E-44 361.9 23.1 208 840-1054 14-228 (250)
35 4g1u_C Hemin import ATP-bindin 100.0 2.2E-39 7.6E-44 360.2 27.2 204 148-396 24-236 (266)
36 3gfo_A Cobalt import ATP-bindi 100.0 7.7E-40 2.6E-44 364.7 23.5 206 149-397 22-233 (275)
37 2olj_A Amino acid ABC transpor 100.0 3.3E-39 1.1E-43 357.6 27.5 205 148-396 37-247 (263)
38 2pcj_A ABC transporter, lipopr 100.0 2.5E-39 8.5E-44 351.5 25.5 200 148-392 17-223 (224)
39 3d31_A Sulfate/molybdate ABC t 100.0 6.8E-40 2.3E-44 375.8 21.6 199 840-1054 12-212 (348)
40 2yyz_A Sugar ABC transporter, 100.0 2.2E-39 7.6E-44 372.6 25.6 206 148-396 16-222 (359)
41 1z47_A CYSA, putative ABC-tran 100.0 1.9E-39 6.6E-44 372.1 25.0 205 149-396 29-234 (355)
42 2ihy_A ABC transporter, ATP-bi 100.0 8.9E-40 3.1E-44 365.7 21.3 218 816-1055 21-248 (279)
43 2yz2_A Putative ABC transporte 100.0 1.4E-39 4.6E-44 362.8 21.6 200 842-1054 20-222 (266)
44 1b0u_A Histidine permease; ABC 100.0 2.8E-39 9.5E-44 359.2 24.0 205 148-396 19-241 (262)
45 2it1_A 362AA long hypothetical 100.0 3E-39 1E-43 372.0 24.9 206 148-396 16-222 (362)
46 2onk_A Molybdate/tungstate ABC 100.0 1.7E-39 5.7E-44 355.7 21.7 196 844-1054 14-211 (240)
47 2ygr_A Uvrabc system protein A 100.0 3E-38 1E-42 397.3 36.0 195 844-1054 657-955 (993)
48 1vpl_A ABC transporter, ATP-bi 100.0 5.7E-39 2E-43 354.6 25.2 206 148-397 28-235 (256)
49 3d31_A Sulfate/molybdate ABC t 100.0 3.6E-39 1.2E-43 369.8 23.6 201 150-396 15-216 (348)
50 1v43_A Sugar-binding transport 100.0 4.5E-39 1.6E-43 371.8 24.5 206 148-396 24-230 (372)
51 1g6h_A High-affinity branched- 100.0 5.1E-39 1.7E-43 356.5 24.0 216 148-394 20-239 (257)
52 1ji0_A ABC transporter; ATP bi 100.0 8.7E-39 3E-43 350.9 25.6 204 148-396 19-227 (240)
53 1g29_1 MALK, maltose transport 100.0 5.6E-39 1.9E-43 371.9 25.0 206 148-396 16-228 (372)
54 2zu0_C Probable ATP-dependent 100.0 1.4E-38 4.7E-43 354.6 26.4 221 816-1055 20-250 (267)
55 1oxx_K GLCV, glucose, ABC tran 100.0 4.5E-39 1.5E-43 370.5 22.1 204 150-396 20-229 (353)
56 3nh6_A ATP-binding cassette SU 100.0 9.1E-39 3.1E-43 360.5 23.8 208 148-397 67-277 (306)
57 2nq2_C Hypothetical ABC transp 100.0 2.8E-38 9.6E-43 349.0 24.7 194 841-1054 17-212 (253)
58 3nh6_A ATP-binding cassette SU 100.0 1.1E-38 3.9E-43 359.7 21.6 211 815-1054 52-272 (306)
59 2onk_A Molybdate/tungstate ABC 100.0 1.5E-38 5.2E-43 348.1 21.7 201 150-396 14-215 (240)
60 2qi9_C Vitamin B12 import ATP- 100.0 1.4E-38 4.7E-43 350.1 21.4 194 843-1054 14-217 (249)
61 2ixe_A Antigen peptide transpo 100.0 1.3E-38 4.4E-43 355.4 19.7 218 816-1054 16-240 (271)
62 2ff7_A Alpha-hemolysin translo 100.0 2.5E-38 8.4E-43 348.5 21.5 211 816-1054 7-227 (247)
63 1sgw_A Putative ABC transporte 100.0 6.7E-39 2.3E-43 344.2 16.4 186 840-1042 21-206 (214)
64 2yz2_A Putative ABC transporte 100.0 7.7E-38 2.6E-42 348.6 22.2 205 148-397 20-227 (266)
65 2ihy_A ABC transporter, ATP-bi 100.0 1.4E-37 4.9E-42 347.8 22.9 209 148-395 34-250 (279)
66 2ff7_A Alpha-hemolysin translo 100.0 2.6E-37 8.9E-42 340.3 23.7 200 148-396 22-231 (247)
67 1mv5_A LMRA, multidrug resista 100.0 3.3E-38 1.1E-42 347.2 16.6 199 841-1054 14-221 (243)
68 2ixe_A Antigen peptide transpo 100.0 2.1E-37 7.2E-42 345.5 21.1 209 148-397 32-245 (271)
69 2d2e_A SUFC protein; ABC-ATPas 100.0 2.8E-37 9.7E-42 341.0 20.3 206 148-394 16-230 (250)
70 2ghi_A Transport protein; mult 100.0 6.5E-37 2.2E-41 339.7 20.5 210 817-1054 18-237 (260)
71 2qi9_C Vitamin B12 import ATP- 100.0 8E-37 2.7E-41 336.1 20.8 197 149-395 14-220 (249)
72 1mv5_A LMRA, multidrug resista 100.0 5.7E-37 1.9E-41 337.4 19.3 202 148-397 15-226 (243)
73 2pjz_A Hypothetical protein ST 100.0 6.6E-37 2.3E-41 339.2 19.7 190 842-1054 18-210 (263)
74 2nq2_C Hypothetical ABC transp 100.0 2.9E-36 1E-40 332.9 24.7 197 148-395 18-215 (253)
75 2ghi_A Transport protein; mult 100.0 1.8E-36 6E-41 336.3 22.4 200 148-397 33-242 (260)
76 2zu0_C Probable ATP-dependent 100.0 2.8E-36 9.5E-41 336.0 23.8 223 148-405 33-261 (267)
77 2pjz_A Hypothetical protein ST 100.0 4E-36 1.4E-40 332.9 22.0 194 148-396 18-214 (263)
78 2pze_A Cystic fibrosis transme 100.0 5.3E-36 1.8E-40 326.4 19.8 186 841-1054 20-213 (229)
79 3gd7_A Fusion complex of cysti 100.0 2E-36 6.7E-41 351.9 17.2 200 148-397 34-242 (390)
80 2pze_A Cystic fibrosis transme 100.0 1.4E-35 4.9E-40 323.0 22.4 196 148-396 21-217 (229)
81 2cbz_A Multidrug resistance-as 100.0 5.2E-36 1.8E-40 328.0 19.0 186 841-1054 17-212 (237)
82 3gd7_A Fusion complex of cysti 100.0 1.3E-36 4.5E-41 353.4 14.8 210 816-1054 19-237 (390)
83 4a82_A Cystic fibrosis transme 100.0 8E-36 2.7E-40 368.7 21.0 208 148-397 354-564 (578)
84 2cbz_A Multidrug resistance-as 100.0 9.4E-36 3.2E-40 326.0 19.2 199 148-397 18-217 (237)
85 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-35 4.1E-40 367.2 21.1 208 148-397 356-566 (587)
86 1sgw_A Putative ABC transporte 100.0 5.8E-36 2E-40 321.4 14.9 188 149-386 23-210 (214)
87 2yl4_A ATP-binding cassette SU 100.0 6.6E-35 2.3E-39 362.0 26.1 215 817-1055 342-566 (595)
88 2yl4_A ATP-binding cassette SU 100.0 5.6E-35 1.9E-39 362.7 25.0 203 148-396 357-569 (595)
89 3b5x_A Lipid A export ATP-bind 100.0 6E-35 2.1E-39 361.4 24.6 202 148-397 356-567 (582)
90 3b60_A Lipid A export ATP-bind 100.0 5.7E-35 1.9E-39 361.7 23.7 202 148-397 356-567 (582)
91 3qf4_A ABC transporter, ATP-bi 100.0 2.4E-35 8.1E-40 364.5 19.3 213 815-1055 340-562 (587)
92 4a82_A Cystic fibrosis transme 100.0 3.7E-35 1.3E-39 362.7 20.9 212 815-1054 338-559 (578)
93 3qf4_B Uncharacterized ABC tra 100.0 2.4E-35 8.2E-40 365.6 19.1 208 148-397 368-578 (598)
94 3b60_A Lipid A export ATP-bind 100.0 9.1E-35 3.1E-39 359.8 22.8 212 816-1054 341-562 (582)
95 3b5x_A Lipid A export ATP-bind 100.0 7.4E-35 2.5E-39 360.6 19.7 212 816-1054 341-562 (582)
96 3qf4_B Uncharacterized ABC tra 100.0 6.6E-35 2.2E-39 361.6 16.5 210 816-1054 354-573 (598)
97 4f4c_A Multidrug resistance pr 100.0 9.1E-35 3.1E-39 388.3 19.0 212 146-397 1090-1304(1321)
98 2bbs_A Cystic fibrosis transme 100.0 6.2E-34 2.1E-38 319.6 18.8 184 842-1054 51-242 (290)
99 2bbs_A Cystic fibrosis transme 100.0 1.7E-33 5.8E-38 316.0 18.3 194 149-396 52-246 (290)
100 3g5u_A MCG1178, multidrug resi 100.0 3.6E-32 1.2E-36 362.5 21.4 211 147-397 1045-1258(1284)
101 3bk7_A ABC transporter ATP-bin 100.0 4.5E-30 1.6E-34 315.8 20.8 191 150-397 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 100.0 6.3E-30 2.2E-34 311.7 19.7 191 150-397 301-493 (538)
103 3ozx_A RNAse L inhibitor; ATP 100.0 1.4E-29 4.6E-34 307.8 21.2 192 150-396 283-476 (538)
104 3j16_B RLI1P; ribosome recycli 100.0 4E-29 1.4E-33 306.7 21.4 193 148-397 360-559 (608)
105 1tf7_A KAIC; homohexamer, hexa 100.0 2.1E-31 7.2E-36 325.9 -0.9 154 849-1044 275-442 (525)
106 2iw3_A Elongation factor 3A; a 100.0 8.5E-29 2.9E-33 313.4 20.1 182 840-1054 446-630 (986)
107 3ux8_A Excinuclease ABC, A sub 100.0 2.6E-29 8.7E-34 316.3 15.4 205 842-1055 31-294 (670)
108 2r6f_A Excinuclease ABC subuni 99.9 6.9E-25 2.3E-29 275.3 18.5 107 282-396 825-941 (972)
109 3pih_A Uvrabc system protein A 99.9 2.4E-24 8.2E-29 273.1 21.3 109 281-396 784-901 (916)
110 2vf7_A UVRA2, excinuclease ABC 99.9 1.8E-24 6.3E-29 272.0 17.9 108 281-396 709-826 (842)
111 2ygr_A Uvrabc system protein A 99.9 2.2E-24 7.5E-29 271.8 18.4 108 282-397 843-960 (993)
112 4aby_A DNA repair protein RECN 99.9 2.5E-24 8.5E-29 256.4 14.9 203 843-1051 49-380 (415)
113 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.3E-27 2.1E-31 278.8 -8.0 195 847-1067 130-350 (460)
114 2npi_A Protein CLP1; CLP1-PCF1 99.9 3.3E-26 1.1E-30 272.6 -4.3 185 153-396 130-337 (460)
115 4aby_A DNA repair protein RECN 99.9 7.1E-23 2.4E-27 243.8 14.4 236 148-390 48-381 (415)
116 3b85_A Phosphate starvation-in 99.9 3E-25 1E-29 237.4 -10.4 144 840-1029 11-159 (208)
117 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 5.9E-22 2E-26 230.6 15.9 82 966-1050 277-364 (365)
118 4gp7_A Metallophosphoesterase; 99.9 3.1E-23 1.1E-27 215.6 3.4 150 847-1038 1-167 (171)
119 1e69_A Chromosome segregation 99.9 1.3E-21 4.5E-26 224.4 14.7 87 966-1055 217-309 (322)
120 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 1.2E-20 4.1E-25 219.6 14.6 84 302-388 275-364 (365)
121 3b85_A Phosphate starvation-in 99.8 5.6E-23 1.9E-27 219.8 -6.2 149 147-371 12-161 (208)
122 2v9p_A Replication protein E1; 99.8 4.3E-23 1.5E-27 231.8 -10.4 158 148-402 113-271 (305)
123 1tq4_A IIGP1, interferon-induc 99.8 1.9E-22 6.5E-27 235.9 -6.2 173 147-379 35-248 (413)
124 1tq4_A IIGP1, interferon-induc 99.8 6.1E-23 2.1E-27 240.0 -10.6 171 842-1040 36-248 (413)
125 1znw_A Guanylate kinase, GMP k 99.8 9.8E-24 3.4E-28 226.5 -16.7 185 840-1046 7-205 (207)
126 1ye8_A Protein THEP1, hypothet 99.8 7.1E-21 2.4E-25 198.6 4.8 148 857-1053 2-162 (178)
127 1e69_A Chromosome segregation 99.8 4.2E-20 1.4E-24 211.9 10.3 80 304-387 217-302 (322)
128 4gp7_A Metallophosphoesterase; 99.8 1.2E-20 4E-25 196.1 4.6 66 306-373 83-164 (171)
129 1ye8_A Protein THEP1, hypothet 99.8 1.4E-20 4.6E-25 196.5 3.0 149 163-388 2-159 (178)
130 3sop_A Neuronal-specific septi 99.8 1.1E-20 3.8E-25 210.4 -3.9 147 857-1028 4-150 (270)
131 2v9p_A Replication protein E1; 99.8 2.1E-22 7.2E-27 226.2 -19.6 157 843-1068 114-271 (305)
132 3b9q_A Chloroplast SRP recepto 99.8 3.3E-20 1.1E-24 209.6 -2.4 153 846-1027 91-256 (302)
133 3b9q_A Chloroplast SRP recepto 99.7 5.9E-20 2E-24 207.6 -1.7 174 151-386 90-284 (302)
134 3sop_A Neuronal-specific septi 99.7 1.2E-19 4E-24 202.2 -0.8 147 163-368 4-150 (270)
135 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.4E-19 4.9E-24 207.3 -0.4 130 844-1045 160-290 (330)
136 1z6g_A Guanylate kinase; struc 99.7 4.3E-22 1.5E-26 215.3 -21.2 153 843-1015 11-174 (218)
137 3qkt_A DNA double-strand break 99.7 3.2E-17 1.1E-21 189.2 17.4 76 966-1043 246-327 (339)
138 1z6g_A Guanylate kinase; struc 99.7 2.2E-21 7.7E-26 209.7 -16.5 156 148-354 10-175 (218)
139 2o5v_A DNA replication and rep 99.7 1.2E-17 4E-22 192.5 13.2 86 301-395 259-354 (359)
140 2og2_A Putative signal recogni 99.7 2E-19 6.8E-24 206.8 -1.7 152 847-1027 149-313 (359)
141 2og2_A Putative signal recogni 99.7 5.3E-19 1.8E-23 203.3 -0.2 173 152-386 148-341 (359)
142 2o5v_A DNA replication and rep 99.7 2.1E-17 7.2E-22 190.4 12.8 79 968-1055 265-352 (359)
143 2dpy_A FLII, flagellum-specifi 99.7 1.5E-19 5.3E-24 214.1 -5.6 184 832-1054 134-339 (438)
144 1znw_A Guanylate kinase, GMP k 99.7 2.4E-20 8.3E-25 200.0 -11.7 185 147-382 8-202 (207)
145 3aez_A Pantothenate kinase; tr 99.7 6.2E-19 2.1E-23 200.1 -2.4 128 153-339 81-209 (312)
146 1cr0_A DNA primase/helicase; R 99.7 4.9E-18 1.7E-22 192.5 4.6 182 843-1045 23-235 (296)
147 2dpy_A FLII, flagellum-specifi 99.7 4.7E-19 1.6E-23 209.9 -5.7 179 148-395 145-342 (438)
148 2pt7_A CAG-ALFA; ATPase, prote 99.7 1E-17 3.4E-22 192.0 3.1 133 150-386 160-292 (330)
149 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 4.1E-16 1.4E-20 156.9 10.9 76 966-1043 55-136 (148)
150 3qkt_A DNA double-strand break 99.6 1.3E-15 4.6E-20 175.6 16.5 77 303-382 245-327 (339)
151 2jeo_A Uridine-cytidine kinase 99.6 3.8E-17 1.3E-21 179.9 2.7 140 146-340 10-149 (245)
152 2ehv_A Hypothetical protein PH 99.6 4.2E-17 1.4E-21 179.6 2.4 162 850-1043 25-206 (251)
153 2eyu_A Twitching motility prot 99.6 5.7E-17 1.9E-21 179.5 2.8 132 843-1044 15-147 (261)
154 2jeo_A Uridine-cytidine kinase 99.6 1.3E-17 4.3E-22 183.7 -2.9 155 840-1027 10-164 (245)
155 1cr0_A DNA primase/helicase; R 99.6 6E-17 2E-21 183.5 2.3 186 147-386 21-237 (296)
156 3aez_A Pantothenate kinase; tr 99.6 3.8E-18 1.3E-22 193.7 -7.5 123 852-1001 87-209 (312)
157 2o8b_B DNA mismatch repair pro 99.6 5.4E-17 1.9E-21 209.7 1.7 158 841-1053 768-936 (1022)
158 4ad8_A DNA repair protein RECN 99.6 1.3E-15 4.4E-20 185.8 13.0 77 304-384 394-473 (517)
159 3thx_A DNA mismatch repair pro 99.6 6.8E-16 2.3E-20 197.0 10.6 157 841-1054 648-808 (934)
160 2obl_A ESCN; ATPase, hydrolase 99.6 6.6E-17 2.2E-21 186.0 -0.8 176 841-1054 58-250 (347)
161 4a74_A DNA repair and recombin 99.6 2.2E-16 7.6E-21 171.5 2.3 152 850-1045 20-200 (231)
162 1tf7_A KAIC; homohexamer, hexa 99.6 2.5E-15 8.7E-20 183.6 10.8 155 155-385 275-444 (525)
163 3thx_A DNA mismatch repair pro 99.6 2.4E-15 8.3E-20 191.9 10.8 89 305-395 720-811 (934)
164 3thx_B DNA mismatch repair pro 99.6 4.9E-16 1.7E-20 197.6 1.9 144 841-1038 659-804 (918)
165 1ewq_A DNA mismatch repair pro 99.5 6.6E-16 2.2E-20 193.9 1.8 129 841-1029 565-699 (765)
166 2obl_A ESCN; ATPase, hydrolase 99.5 5.8E-16 2E-20 178.0 0.9 180 148-395 59-253 (347)
167 2qnr_A Septin-2, protein NEDD5 99.5 2.9E-16 1E-20 177.8 -1.8 158 839-1029 8-168 (301)
168 3asz_A Uridine kinase; cytidin 99.5 2.4E-16 8.3E-21 169.2 -4.3 144 158-365 3-159 (211)
169 4a74_A DNA repair and recombin 99.5 1.7E-15 5.9E-20 164.5 2.2 154 156-385 20-201 (231)
170 2o8b_B DNA mismatch repair pro 99.5 1.6E-15 5.5E-20 196.1 1.9 159 148-393 769-938 (1022)
171 1rj9_A FTSY, signal recognitio 99.5 7.3E-16 2.5E-20 174.1 -1.3 146 854-1028 101-258 (304)
172 3asz_A Uridine kinase; cytidin 99.5 4.4E-17 1.5E-21 174.9 -11.3 145 852-1028 3-161 (211)
173 1pzn_A RAD51, DNA repair and r 99.5 9.3E-16 3.2E-20 177.2 -1.2 159 849-1052 125-308 (349)
174 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 4.4E-14 1.5E-18 142.1 10.2 83 301-386 52-142 (148)
175 1wb9_A DNA mismatch repair pro 99.5 4.1E-15 1.4E-19 187.8 3.3 155 841-1051 594-750 (800)
176 2eyu_A Twitching motility prot 99.5 5.8E-15 2E-19 163.4 4.1 133 149-383 15-147 (261)
177 2ehv_A Hypothetical protein PH 99.5 2.2E-15 7.5E-20 165.8 -0.5 71 310-382 121-206 (251)
178 2i3b_A HCR-ntpase, human cance 99.5 3E-16 1E-20 165.0 -7.2 158 161-390 1-169 (189)
179 1pzn_A RAD51, DNA repair and r 99.5 2.6E-15 8.8E-20 173.5 -0.2 169 149-392 118-310 (349)
180 2w0m_A SSO2452; RECA, SSPF, un 99.5 1.3E-14 4.6E-19 157.5 4.5 166 843-1044 10-191 (235)
181 1nlf_A Regulatory protein REPA 99.5 4.1E-14 1.4E-18 158.7 8.0 151 851-1029 26-182 (279)
182 3thx_B DNA mismatch repair pro 99.5 5.1E-14 1.7E-18 179.2 9.4 81 305-388 734-816 (918)
183 1ewq_A DNA mismatch repair pro 99.5 1.2E-14 4E-19 182.6 3.4 132 148-375 566-704 (765)
184 2i3b_A HCR-ntpase, human cance 99.5 5.4E-16 1.9E-20 163.0 -7.9 159 855-1054 1-171 (189)
185 1w1w_A Structural maintenance 99.5 2.8E-13 9.5E-18 161.5 14.5 75 305-382 332-410 (430)
186 3jvv_A Twitching mobility prot 99.4 1.8E-14 6.1E-19 166.1 3.6 127 851-1044 119-245 (356)
187 2qnr_A Septin-2, protein NEDD5 99.4 4E-15 1.4E-19 168.4 -2.7 155 148-368 11-167 (301)
188 3szr_A Interferon-induced GTP- 99.4 3.2E-15 1.1E-19 184.9 -4.0 166 164-397 48-237 (608)
189 1rj9_A FTSY, signal recognitio 99.4 7.1E-15 2.4E-19 166.1 -0.9 148 160-367 101-257 (304)
190 3szr_A Interferon-induced GTP- 99.4 3.8E-14 1.3E-18 175.3 1.7 136 858-1029 48-197 (608)
191 2w0m_A SSO2452; RECA, SSPF, un 99.4 9.4E-13 3.2E-17 142.8 12.1 78 306-384 103-192 (235)
192 2qag_C Septin-7; cell cycle, c 99.4 1.5E-14 5.1E-19 169.8 -2.5 153 840-1029 22-178 (418)
193 3kta_B Chromosome segregation 99.4 1E-12 3.5E-17 135.6 10.7 75 966-1043 62-140 (173)
194 1wb9_A DNA mismatch repair pro 99.4 1E-13 3.5E-18 175.1 3.7 157 148-391 595-752 (800)
195 2qag_B Septin-6, protein NEDD5 99.4 3.1E-14 1E-18 166.2 -1.1 175 840-1027 26-218 (427)
196 1nlf_A Regulatory protein REPA 99.4 8.1E-13 2.8E-17 148.1 10.2 153 157-370 26-183 (279)
197 4ad8_A DNA repair protein RECN 99.3 1.2E-12 4E-17 159.7 10.2 75 967-1044 395-472 (517)
198 1s96_A Guanylate kinase, GMP k 99.3 3.2E-14 1.1E-18 153.2 -3.4 126 851-1029 12-141 (219)
199 1pui_A ENGB, probable GTP-bind 99.3 2.4E-14 8.3E-19 153.0 -4.3 166 844-1020 17-202 (210)
200 2cvh_A DNA repair and recombin 99.3 4.7E-12 1.6E-16 136.2 12.6 153 844-1045 8-185 (220)
201 1s96_A Guanylate kinase, GMP k 99.3 2E-13 7E-18 146.9 0.3 148 156-399 11-162 (219)
202 3jvv_A Twitching mobility prot 99.3 7.4E-13 2.5E-17 152.6 4.1 59 316-384 188-246 (356)
203 1lw7_A Transcriptional regulat 99.3 6.6E-15 2.2E-19 171.7 -14.4 164 150-382 157-342 (365)
204 2ewv_A Twitching motility prot 99.3 5.8E-13 2E-17 155.0 1.3 130 844-1043 127-257 (372)
205 2cvh_A DNA repair and recombin 99.3 7.5E-12 2.6E-16 134.6 9.8 77 307-384 85-185 (220)
206 3kta_B Chromosome segregation 99.3 1E-11 3.4E-16 128.1 10.2 79 304-386 62-146 (173)
207 2bdt_A BH3686; alpha-beta prot 99.3 8.9E-15 3E-19 154.1 -13.4 167 855-1055 2-180 (189)
208 1nij_A Hypothetical protein YJ 99.2 3.3E-15 1.1E-19 170.6 -19.0 156 856-1029 5-190 (318)
209 2qag_C Septin-7; cell cycle, c 99.2 1.2E-12 4.3E-17 153.5 2.0 129 148-342 24-158 (418)
210 2bdt_A BH3686; alpha-beta prot 99.2 1.7E-14 5.9E-19 151.9 -12.5 169 161-395 2-182 (189)
211 1zp6_A Hypothetical protein AT 99.2 6.9E-13 2.4E-17 139.6 -0.5 141 852-1014 6-147 (191)
212 2gza_A Type IV secretion syste 99.2 7.5E-13 2.6E-17 153.6 -0.3 137 844-1045 164-302 (361)
213 1htw_A HI0065; nucleotide-bind 99.2 5.6E-13 1.9E-17 135.8 -1.6 78 148-232 20-97 (158)
214 1lw7_A Transcriptional regulat 99.2 5E-14 1.7E-18 164.3 -12.3 161 846-1043 159-342 (365)
215 2gza_A Type IV secretion syste 99.2 5.5E-12 1.9E-16 146.3 4.8 67 150-219 164-232 (361)
216 2f1r_A Molybdopterin-guanine d 99.2 1.6E-13 5.4E-18 141.7 -7.6 112 162-328 3-125 (171)
217 2bbw_A Adenylate kinase 4, AK4 99.2 4.8E-14 1.6E-18 155.1 -12.6 144 854-1018 26-200 (246)
218 1zp6_A Hypothetical protein AT 99.2 4.2E-12 1.4E-16 133.6 2.8 140 157-350 5-145 (191)
219 3auy_A DNA double-strand break 99.2 4.7E-11 1.6E-15 139.3 11.7 78 966-1046 278-362 (371)
220 1n0w_A DNA repair protein RAD5 99.2 1.8E-11 6.2E-16 133.7 7.4 148 850-1045 19-209 (243)
221 2qag_B Septin-6, protein NEDD5 99.2 5.2E-12 1.8E-16 147.5 3.0 158 151-351 30-203 (427)
222 1pui_A ENGB, probable GTP-bind 99.2 6.4E-13 2.2E-17 141.9 -5.1 69 282-354 129-198 (210)
223 1odf_A YGR205W, hypothetical 3 99.2 4.8E-12 1.6E-16 142.0 1.2 129 159-341 29-169 (290)
224 2rcn_A Probable GTPase ENGC; Y 99.1 7.4E-12 2.5E-16 143.4 2.6 115 853-983 213-328 (358)
225 2bbw_A Adenylate kinase 4, AK4 99.1 4.4E-13 1.5E-17 147.4 -8.0 157 160-354 26-198 (246)
226 2yhs_A FTSY, cell division pro 99.1 2.5E-12 8.4E-17 151.8 -2.2 152 846-1026 284-447 (503)
227 1htw_A HI0065; nucleotide-bind 99.1 7.1E-13 2.4E-17 135.0 -6.5 80 840-925 18-97 (158)
228 2ewv_A Twitching motility prot 99.1 1.7E-11 5.9E-16 142.6 3.7 131 150-382 127-257 (372)
229 2qm8_A GTPase/ATPase; G protei 99.1 1.6E-13 5.4E-18 157.7 -13.4 164 842-1015 42-259 (337)
230 1udx_A The GTP-binding protein 99.1 4.4E-12 1.5E-16 148.8 -2.1 169 846-1039 148-319 (416)
231 2kjq_A DNAA-related protein; s 99.1 4.9E-11 1.7E-15 120.3 5.9 45 984-1029 81-126 (149)
232 2rcn_A Probable GTPase ENGC; Y 99.1 9.5E-12 3.2E-16 142.5 0.4 121 151-321 206-328 (358)
233 2yhs_A FTSY, cell division pro 99.1 5E-12 1.7E-16 149.2 -2.2 81 151-234 283-372 (503)
234 1w1w_A Structural maintenance 99.1 1.4E-10 4.9E-15 138.1 10.2 76 967-1044 332-411 (430)
235 1n0w_A DNA repair protein RAD5 99.1 4.3E-11 1.5E-15 130.7 5.1 29 156-184 19-47 (243)
236 3e70_C DPA, signal recognition 99.1 7.1E-12 2.4E-16 142.8 -1.5 142 853-1027 127-278 (328)
237 2f1r_A Molybdopterin-guanine d 99.1 9.7E-13 3.3E-17 135.8 -8.7 139 856-1019 3-164 (171)
238 2qm8_A GTPase/ATPase; G protei 99.0 3.1E-12 1.1E-16 146.9 -7.4 181 149-353 43-259 (337)
239 3ec2_A DNA replication protein 99.0 1.4E-10 4.7E-15 120.9 5.1 48 983-1030 97-145 (180)
240 3e70_C DPA, signal recognition 99.0 2.5E-11 8.6E-16 138.3 -1.3 74 157-233 125-207 (328)
241 3lda_A DNA repair protein RAD5 99.0 2.2E-10 7.4E-15 133.9 6.5 148 850-1045 173-363 (400)
242 1udx_A The GTP-binding protein 99.0 1.6E-11 5.4E-16 144.1 -3.6 170 151-378 147-319 (416)
243 1odf_A YGR205W, hypothetical 3 99.0 2.1E-11 7E-16 136.9 -2.6 129 853-1003 29-169 (290)
244 1nij_A Hypothetical protein YJ 99.0 3.8E-13 1.3E-17 153.6 -17.1 167 161-375 4-196 (318)
245 2oap_1 GSPE-2, type II secreti 99.0 3.6E-12 1.2E-16 153.7 -9.4 85 148-235 247-331 (511)
246 3auy_A DNA double-strand break 99.0 9.5E-10 3.3E-14 128.2 10.4 98 281-382 244-359 (371)
247 1p9r_A General secretion pathw 99.0 1.6E-11 5.5E-16 144.3 -4.8 137 148-329 156-314 (418)
248 1p9r_A General secretion pathw 99.0 1.3E-12 4.3E-17 153.7 -14.9 147 832-992 146-315 (418)
249 2yv5_A YJEQ protein; hydrolase 99.0 1.2E-10 4E-15 131.8 1.6 124 158-319 162-300 (302)
250 3ec2_A DNA replication protein 98.9 1.5E-10 5E-15 120.7 1.1 48 322-370 98-146 (180)
251 2oap_1 GSPE-2, type II secreti 98.9 3.1E-13 1.1E-17 163.0 -22.3 173 842-1029 247-451 (511)
252 2yv5_A YJEQ protein; hydrolase 98.9 4.9E-11 1.7E-15 134.9 -3.2 119 853-982 163-301 (302)
253 1sxj_E Activator 1 40 kDa subu 98.9 1E-09 3.5E-14 127.0 6.4 134 858-1029 39-175 (354)
254 3c8u_A Fructokinase; YP_612366 98.9 4.1E-11 1.4E-15 128.1 -5.5 121 158-334 19-140 (208)
255 2x8a_A Nuclear valosin-contain 98.9 1E-11 3.4E-16 138.6 -11.2 141 149-349 34-190 (274)
256 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.9E-11 6.4E-16 142.1 -10.1 171 157-393 16-209 (392)
257 3c8u_A Fructokinase; YP_612366 98.8 2.6E-11 9E-16 129.6 -10.1 147 853-1038 20-168 (208)
258 1lvg_A Guanylate kinase, GMP k 98.8 1.7E-12 5.7E-17 137.8 -19.8 57 317-383 116-173 (198)
259 3lda_A DNA repair protein RAD5 98.8 2.5E-08 8.7E-13 116.4 13.0 62 323-385 272-364 (400)
260 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 7.3E-12 2.5E-16 145.5 -17.0 170 851-1055 16-209 (392)
261 2kjq_A DNAA-related protein; s 98.8 8.8E-09 3E-13 103.7 7.7 33 150-187 30-62 (149)
262 1sq5_A Pantothenate kinase; P- 98.7 2.2E-10 7.5E-15 130.1 -6.1 73 159-236 78-155 (308)
263 1u0l_A Probable GTPase ENGC; p 98.7 2.1E-09 7.4E-14 121.5 0.8 74 156-233 164-259 (301)
264 1in4_A RUVB, holliday junction 98.7 1.4E-10 4.8E-15 133.4 -9.2 154 149-356 32-196 (334)
265 1lvg_A Guanylate kinase, GMP k 98.7 3.6E-12 1.2E-16 135.3 -21.1 56 979-1043 116-172 (198)
266 1sxj_E Activator 1 40 kDa subu 98.7 1.4E-08 4.8E-13 117.5 7.1 135 164-369 39-175 (354)
267 1t9h_A YLOQ, probable GTPase E 98.7 2.9E-09 1E-13 119.7 1.2 72 156-231 168-248 (307)
268 2dr3_A UPF0273 protein PH0284; 98.7 2.9E-09 9.8E-14 116.4 0.7 68 977-1044 117-196 (247)
269 1in4_A RUVB, holliday junction 98.7 1.3E-10 4.6E-15 133.5 -10.9 152 840-1016 29-194 (334)
270 1t9h_A YLOQ, probable GTPase E 98.6 1.5E-09 5E-14 122.1 -2.7 116 852-975 170-302 (307)
271 1sq5_A Pantothenate kinase; P- 98.6 3.4E-10 1.2E-14 128.5 -8.1 76 853-930 78-156 (308)
272 2r6a_A DNAB helicase, replicat 98.6 1.3E-08 4.3E-13 122.0 4.4 178 843-1045 191-399 (454)
273 2x8a_A Nuclear valosin-contain 98.6 2.8E-11 9.4E-16 135.1 -17.5 128 842-997 33-164 (274)
274 1u0l_A Probable GTPase ENGC; p 98.6 1.3E-08 4.4E-13 115.1 4.0 100 852-960 166-288 (301)
275 1vma_A Cell division protein F 98.6 4.7E-08 1.6E-12 110.2 6.8 114 154-354 97-213 (306)
276 3euj_A Chromosome partition pr 98.5 2.1E-08 7.1E-13 119.1 3.0 53 148-204 17-69 (483)
277 2zr9_A Protein RECA, recombina 98.5 2.2E-07 7.6E-12 106.9 11.4 78 975-1053 126-237 (349)
278 3k1j_A LON protease, ATP-depen 98.5 7E-09 2.4E-13 128.7 -1.5 159 148-351 47-227 (604)
279 1vma_A Cell division protein F 98.5 3.3E-08 1.1E-12 111.4 3.3 113 848-1015 97-212 (306)
280 1ls1_A Signal recognition part 98.5 2.5E-07 8.4E-12 104.1 10.3 118 846-1014 91-209 (295)
281 2dr3_A UPF0273 protein PH0284; 98.5 4.5E-07 1.5E-11 98.8 12.0 60 323-383 127-196 (247)
282 2px0_A Flagellar biosynthesis 98.5 2E-07 6.7E-12 104.8 9.3 142 159-389 103-247 (296)
283 2px0_A Flagellar biosynthesis 98.4 2.3E-07 7.8E-12 104.3 7.8 158 853-1068 103-265 (296)
284 3tr0_A Guanylate kinase, GMP k 98.4 1.4E-08 4.7E-13 107.8 -2.1 71 155-232 1-74 (205)
285 2r6a_A DNAB helicase, replicat 98.4 4.1E-07 1.4E-11 108.8 10.2 183 147-386 189-401 (454)
286 2ius_A DNA translocase FTSK; n 98.4 4.2E-09 1.4E-13 126.0 -7.2 166 847-1029 159-343 (512)
287 1iy2_A ATP-dependent metallopr 98.4 1.1E-10 3.6E-15 130.8 -20.1 125 841-989 61-190 (278)
288 1oix_A RAS-related protein RAB 98.4 3.2E-08 1.1E-12 103.9 0.1 38 975-1014 152-189 (191)
289 1ixz_A ATP-dependent metallopr 98.4 1.4E-10 4.9E-15 127.8 -19.3 125 841-989 37-166 (254)
290 1ls1_A Signal recognition part 98.4 1.6E-06 5.5E-11 97.4 13.2 118 152-352 91-209 (295)
291 3tr0_A Guanylate kinase, GMP k 98.4 1.8E-08 6.2E-13 106.8 -3.1 68 849-922 1-71 (205)
292 3euj_A Chromosome partition pr 98.4 4.2E-08 1.4E-12 116.5 -0.8 51 843-896 18-68 (483)
293 3k1j_A LON protease, ATP-depen 98.3 7E-09 2.4E-13 128.7 -8.5 161 840-1013 45-227 (604)
294 1iy2_A ATP-dependent metallopr 98.3 1.9E-09 6.4E-14 120.6 -12.9 76 149-231 63-142 (278)
295 1ixz_A ATP-dependent metallopr 98.3 1.8E-09 6.3E-14 118.9 -12.9 47 149-202 39-85 (254)
296 1oix_A RAS-related protein RAB 98.3 1.1E-07 3.9E-12 99.6 1.4 43 307-351 146-188 (191)
297 2zr9_A Protein RECA, recombina 98.2 1.2E-06 4.2E-11 100.7 7.4 30 156-185 56-85 (349)
298 3hr8_A Protein RECA; alpha and 98.2 7.4E-07 2.5E-11 102.1 5.5 31 156-186 56-86 (356)
299 2f9l_A RAB11B, member RAS onco 98.2 6.9E-07 2.4E-11 94.1 4.9 37 977-1015 130-166 (199)
300 2ius_A DNA translocase FTSK; n 98.2 1.9E-07 6.6E-12 111.6 0.4 165 154-369 160-343 (512)
301 3lnc_A Guanylate kinase, GMP k 98.2 4.4E-07 1.5E-11 98.3 2.2 38 843-880 15-53 (231)
302 3lnc_A Guanylate kinase, GMP k 98.2 4.6E-07 1.6E-11 98.1 2.2 40 148-187 14-54 (231)
303 1qhl_A Protein (cell division 98.1 9.7E-08 3.3E-12 102.7 -3.7 59 155-217 22-91 (227)
304 2qtf_A Protein HFLX, GTP-bindi 98.1 2.9E-06 9.8E-11 98.1 6.1 150 855-1016 178-353 (364)
305 1qhl_A Protein (cell division 98.0 1.2E-07 4.2E-12 101.9 -5.2 59 849-910 22-91 (227)
306 2qtf_A Protein HFLX, GTP-bindi 98.0 3.4E-06 1.2E-10 97.5 6.5 158 160-354 177-353 (364)
307 4eun_A Thermoresistant glucoki 98.0 2.7E-07 9.3E-12 97.6 -2.6 57 850-912 24-82 (200)
308 2ce7_A Cell division protein F 98.0 3.4E-06 1.2E-10 100.5 6.1 59 971-1029 93-165 (476)
309 2ce7_A Cell division protein F 98.0 3.7E-06 1.3E-10 100.2 5.9 61 309-369 93-165 (476)
310 3hr8_A Protein RECA; alpha and 98.0 9.1E-06 3.1E-10 93.1 7.9 29 850-878 56-84 (356)
311 4eun_A Thermoresistant glucoki 98.0 3.1E-07 1.1E-11 97.1 -4.2 70 156-232 24-95 (200)
312 3kta_A Chromosome segregation 97.9 6E-06 2E-10 85.6 4.1 36 152-188 18-53 (182)
313 2f9l_A RAB11B, member RAS onco 97.8 1.6E-05 5.3E-10 83.6 6.7 38 314-353 129-166 (199)
314 4a1f_A DNAB helicase, replicat 97.8 1.2E-05 4.3E-10 91.3 6.0 139 147-383 32-170 (338)
315 2e87_A Hypothetical protein PH 97.8 3.7E-05 1.2E-09 88.9 9.9 60 967-1028 230-292 (357)
316 2xau_A PRE-mRNA-splicing facto 97.8 6.4E-06 2.2E-10 104.6 3.7 71 967-1038 189-261 (773)
317 2j41_A Guanylate kinase; GMP, 97.8 6.8E-06 2.3E-10 86.8 2.7 31 157-187 2-32 (207)
318 4a1f_A DNAB helicase, replicat 97.8 8.5E-06 2.9E-10 92.7 3.6 127 845-1026 36-164 (338)
319 3vaa_A Shikimate kinase, SK; s 97.8 8.5E-06 2.9E-10 85.9 3.0 41 146-186 10-50 (199)
320 1zu4_A FTSY; GTPase, signal re 97.7 4.7E-06 1.6E-10 94.6 0.4 81 150-233 94-187 (320)
321 2dhr_A FTSH; AAA+ protein, hex 97.7 7.6E-07 2.6E-11 106.8 -6.6 49 149-204 54-102 (499)
322 3a00_A Guanylate kinase, GMP k 97.7 9.7E-06 3.3E-10 84.5 1.9 27 161-187 1-27 (186)
323 2j41_A Guanylate kinase; GMP, 97.7 1.5E-05 5.2E-10 84.1 2.9 30 851-880 2-31 (207)
324 4e22_A Cytidylate kinase; P-lo 97.6 5.1E-06 1.7E-10 91.2 -1.6 63 150-218 19-96 (252)
325 2xau_A PRE-mRNA-splicing facto 97.6 3.6E-05 1.2E-09 97.7 5.6 72 305-377 189-261 (773)
326 2dy1_A Elongation factor G; tr 97.6 1.7E-05 5.9E-10 99.0 2.5 131 850-1029 4-137 (665)
327 3nwj_A ATSK2; P loop, shikimat 97.6 6.5E-06 2.2E-10 89.9 -1.3 39 148-186 32-73 (250)
328 4e22_A Cytidylate kinase; P-lo 97.6 6.9E-06 2.4E-10 90.1 -1.2 57 853-911 25-96 (252)
329 3uie_A Adenylyl-sulfate kinase 97.6 5.2E-06 1.8E-10 87.6 -2.2 51 148-202 12-64 (200)
330 3nwj_A ATSK2; P loop, shikimat 97.5 4.7E-06 1.6E-10 91.0 -3.7 38 841-878 31-71 (250)
331 2dhr_A FTSH; AAA+ protein, hex 97.5 7E-07 2.4E-11 107.0 -11.6 76 843-924 54-133 (499)
332 1kgd_A CASK, peripheral plasma 97.5 4.5E-05 1.5E-09 79.0 3.4 37 159-197 3-39 (180)
333 3vaa_A Shikimate kinase, SK; s 97.5 4E-05 1.4E-09 80.7 3.0 37 842-878 12-48 (199)
334 1svm_A Large T antigen; AAA+ f 97.5 2.1E-05 7.3E-10 90.9 0.7 44 148-197 156-199 (377)
335 3kta_A Chromosome segregation 97.4 4.1E-05 1.4E-09 79.1 2.7 33 846-879 18-50 (182)
336 1fnn_A CDC6P, cell division co 97.4 0.0005 1.7E-08 79.8 12.2 44 985-1029 124-170 (389)
337 2vp4_A Deoxynucleoside kinase; 97.4 2.9E-05 9.9E-10 83.8 1.4 42 154-202 13-54 (230)
338 1zu4_A FTSY; GTPase, signal re 97.4 1.7E-05 5.8E-10 89.9 -0.5 49 845-895 95-143 (320)
339 1jjv_A Dephospho-COA kinase; P 97.4 2.4E-05 8.3E-10 82.7 0.4 70 970-1043 61-131 (206)
340 3a00_A Guanylate kinase, GMP k 97.4 4.4E-05 1.5E-09 79.5 1.9 26 855-880 1-26 (186)
341 2vp4_A Deoxynucleoside kinase; 97.4 4.5E-05 1.5E-09 82.4 1.9 39 851-895 16-54 (230)
342 1v5w_A DMC1, meiotic recombina 97.4 0.00047 1.6E-08 79.0 10.6 28 850-877 117-144 (343)
343 3bh0_A DNAB-like replicative h 97.4 0.00019 6.6E-09 81.3 7.1 37 148-184 55-91 (315)
344 1ega_A Protein (GTP-binding pr 97.4 0.00013 4.3E-09 82.2 5.4 154 853-1039 7-169 (301)
345 1kgd_A CASK, peripheral plasma 97.4 6E-05 2.1E-09 78.0 2.6 38 854-892 4-41 (180)
346 3t34_A Dynamin-related protein 97.4 0.0002 7E-09 82.7 7.3 57 969-1026 155-212 (360)
347 3tqc_A Pantothenate kinase; bi 97.3 4.3E-05 1.5E-09 86.3 1.4 58 149-223 74-137 (321)
348 3tau_A Guanylate kinase, GMP k 97.3 9.8E-05 3.3E-09 78.3 3.9 29 159-187 6-34 (208)
349 1svm_A Large T antigen; AAA+ f 97.3 1.4E-05 4.8E-10 92.4 -3.0 63 843-912 157-219 (377)
350 2qt1_A Nicotinamide riboside k 97.3 0.00013 4.4E-09 77.2 4.7 45 156-223 16-60 (207)
351 2z43_A DNA repair and recombin 97.3 0.0005 1.7E-08 78.2 9.8 55 973-1027 187-257 (324)
352 3bh0_A DNAB-like replicative h 97.3 0.00017 5.7E-09 81.8 5.7 130 844-1026 57-189 (315)
353 1knq_A Gluconate kinase; ALFA/ 97.3 1.4E-05 4.9E-10 82.1 -2.9 37 853-895 6-42 (175)
354 1knq_A Gluconate kinase; ALFA/ 97.3 8.9E-05 3E-09 76.1 2.7 35 159-200 6-40 (175)
355 3b9p_A CG5977-PA, isoform A; A 97.3 0.001 3.6E-08 74.3 11.6 71 970-1040 97-184 (297)
356 2e87_A Hypothetical protein PH 97.2 0.00033 1.1E-08 80.8 7.3 56 306-364 231-287 (357)
357 1jjv_A Dephospho-COA kinase; P 97.2 0.00021 7.1E-09 75.4 5.0 70 307-382 60-131 (206)
358 1rz3_A Hypothetical protein rb 97.2 7.7E-05 2.6E-09 78.7 1.5 39 158-199 19-57 (201)
359 3ney_A 55 kDa erythrocyte memb 97.2 0.00013 4.4E-09 76.4 3.1 29 158-186 16-44 (197)
360 3b9p_A CG5977-PA, isoform A; A 97.2 0.0027 9.3E-08 70.9 13.7 27 159-185 52-78 (297)
361 3uie_A Adenylyl-sulfate kinase 97.2 3.4E-05 1.2E-09 81.3 -2.0 46 847-895 17-64 (200)
362 3t34_A Dynamin-related protein 97.1 0.00068 2.3E-08 78.2 8.4 34 148-184 24-57 (360)
363 2z43_A DNA repair and recombin 97.1 0.0011 3.9E-08 75.2 10.0 35 150-184 95-130 (324)
364 3tau_A Guanylate kinase, GMP k 97.1 0.00017 5.7E-09 76.5 2.8 28 853-880 6-33 (208)
365 1v5w_A DMC1, meiotic recombina 97.1 0.0018 6.3E-08 74.1 11.4 35 150-184 110-145 (343)
366 1kag_A SKI, shikimate kinase I 97.0 0.00023 8E-09 72.6 3.0 27 160-186 3-29 (173)
367 3cr8_A Sulfate adenylyltranfer 97.0 0.00016 5.5E-09 87.7 1.6 42 157-201 365-408 (552)
368 2qt1_A Nicotinamide riboside k 97.0 0.0003 1E-08 74.3 3.4 29 851-879 17-45 (207)
369 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00038 1.3E-08 69.6 3.8 30 153-183 16-45 (149)
370 2z4s_A Chromosomal replication 96.9 0.00037 1.3E-08 82.7 3.8 47 323-370 193-240 (440)
371 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00036 1.2E-08 69.8 2.9 28 848-876 17-44 (149)
372 1fnn_A CDC6P, cell division co 96.9 0.0047 1.6E-07 71.5 12.9 28 160-187 41-70 (389)
373 2dy1_A Elongation factor G; tr 96.9 0.00017 6E-09 89.9 0.6 45 156-202 4-48 (665)
374 3ney_A 55 kDa erythrocyte memb 96.9 0.00033 1.1E-08 73.3 2.6 27 853-879 17-43 (197)
375 2z4s_A Chromosomal replication 96.9 0.00076 2.6E-08 80.0 5.6 70 985-1055 193-264 (440)
376 1rz3_A Hypothetical protein rb 96.8 0.0002 6.7E-09 75.5 -0.2 39 853-893 20-58 (201)
377 2qby_A CDC6 homolog 1, cell di 96.7 0.00026 8.8E-09 82.0 0.5 26 853-878 43-68 (386)
378 1ypw_A Transitional endoplasmi 96.7 0.0011 3.6E-08 84.7 5.6 30 851-880 234-263 (806)
379 4eaq_A DTMP kinase, thymidylat 96.7 0.00067 2.3E-08 73.0 3.2 37 150-186 12-51 (229)
380 3tqc_A Pantothenate kinase; bi 96.7 6.6E-05 2.3E-09 84.8 -5.2 37 843-879 74-116 (321)
381 3cf0_A Transitional endoplasmi 96.7 0.0011 3.8E-08 74.4 4.9 28 852-879 46-73 (301)
382 2p67_A LAO/AO transport system 96.6 0.00027 9.1E-09 81.0 -0.4 39 149-187 44-82 (341)
383 1kag_A SKI, shikimate kinase I 96.6 0.00054 1.9E-08 69.9 2.0 26 854-879 3-28 (173)
384 4fcw_A Chaperone protein CLPB; 96.6 0.0071 2.4E-07 67.8 11.1 28 160-187 46-73 (311)
385 1cke_A CK, MSSA, protein (cyti 96.6 0.00029 1E-08 75.4 -0.5 37 161-197 5-41 (227)
386 3kl4_A SRP54, signal recogniti 96.6 0.0023 7.8E-08 75.1 7.0 25 854-878 96-120 (433)
387 2www_A Methylmalonic aciduria 96.6 0.00061 2.1E-08 78.2 1.9 38 159-199 72-109 (349)
388 2gj8_A MNME, tRNA modification 96.5 0.0019 6.4E-08 65.9 5.3 27 853-879 2-28 (172)
389 3m6a_A ATP-dependent protease 96.5 0.00054 1.8E-08 83.5 1.4 47 149-199 97-143 (543)
390 3cr8_A Sulfate adenylyltranfer 96.5 0.0003 1E-08 85.3 -1.6 41 852-894 366-408 (552)
391 3kl4_A SRP54, signal recogniti 96.4 0.0051 1.7E-07 72.1 8.7 28 160-187 96-123 (433)
392 2gj8_A MNME, tRNA modification 96.4 0.0027 9.4E-08 64.7 5.5 27 159-185 2-28 (172)
393 3lxx_A GTPase IMAP family memb 96.4 0.014 4.8E-07 62.8 11.5 42 985-1026 111-154 (239)
394 1m7g_A Adenylylsulfate kinase; 96.4 0.00078 2.7E-08 71.4 1.1 40 158-200 22-63 (211)
395 1mky_A Probable GTP-binding pr 96.3 0.0029 9.8E-08 75.1 5.9 71 162-232 181-263 (439)
396 2pez_A Bifunctional 3'-phospho 96.3 0.0015 5.3E-08 67.0 3.1 28 159-186 3-30 (179)
397 3qks_A DNA double-strand break 96.3 0.0019 6.3E-08 68.2 3.8 30 154-184 17-46 (203)
398 3llm_A ATP-dependent RNA helic 96.3 0.0013 4.4E-08 71.0 2.2 24 853-876 74-97 (235)
399 2qor_A Guanylate kinase; phosp 96.3 0.0016 5.5E-08 68.6 2.8 30 157-186 8-37 (204)
400 1m2o_B GTP-binding protein SAR 96.3 0.0029 9.8E-08 65.6 4.7 49 843-892 12-66 (190)
401 3lxx_A GTPase IMAP family memb 96.2 0.031 1.1E-06 60.0 13.1 24 163-186 31-54 (239)
402 1y63_A LMAJ004144AAA protein; 96.2 0.0019 6.5E-08 66.8 3.3 32 153-184 2-33 (184)
403 1u94_A RECA protein, recombina 96.2 0.022 7.5E-07 65.2 12.4 28 850-877 58-85 (356)
404 3qks_A DNA double-strand break 96.2 0.0017 5.9E-08 68.4 2.9 27 849-876 18-44 (203)
405 2i1q_A DNA repair and recombin 96.2 0.017 5.7E-07 65.4 11.2 28 850-877 93-120 (322)
406 1np6_A Molybdopterin-guanine d 96.2 0.0023 7.7E-08 65.7 3.4 40 162-201 7-46 (174)
407 2qby_A CDC6 homolog 1, cell di 96.2 0.0019 6.4E-08 74.6 3.1 28 159-186 43-70 (386)
408 1m2o_B GTP-binding protein SAR 96.2 0.0033 1.1E-07 65.2 4.6 35 149-184 12-46 (190)
409 1mky_A Probable GTP-binding pr 96.1 0.0034 1.2E-07 74.4 5.1 38 857-894 182-229 (439)
410 1u94_A RECA protein, recombina 96.1 0.05 1.7E-06 62.2 14.4 30 156-185 58-87 (356)
411 3ice_A Transcription terminati 96.1 0.001 3.5E-08 75.8 0.1 32 847-878 166-197 (422)
412 4eaq_A DTMP kinase, thymidylat 96.1 0.0021 7.3E-08 69.0 2.5 36 845-880 13-51 (229)
413 3h4m_A Proteasome-activating n 96.0 0.02 6.7E-07 63.3 10.5 28 158-185 48-75 (285)
414 1f6b_A SAR1; gtpases, N-termin 96.0 0.0016 5.5E-08 68.1 1.5 35 149-184 14-48 (198)
415 2p67_A LAO/AO transport system 96.0 0.00036 1.2E-08 79.9 -3.9 38 842-879 43-80 (341)
416 2ga8_A Hypothetical 39.9 kDa p 96.0 0.00092 3.2E-08 75.9 -0.5 37 150-186 11-49 (359)
417 2ffh_A Protein (FFH); SRP54, s 96.0 0.0043 1.5E-07 72.7 4.9 43 152-199 91-133 (425)
418 3h4m_A Proteasome-activating n 96.0 0.0076 2.6E-07 66.7 6.6 27 853-879 49-75 (285)
419 2yvu_A Probable adenylyl-sulfa 96.0 0.0024 8.1E-08 66.1 2.3 30 158-187 10-39 (186)
420 2www_A Methylmalonic aciduria 96.0 0.0012 4.1E-08 75.8 0.0 39 853-893 72-110 (349)
421 2pez_A Bifunctional 3'-phospho 95.9 0.0028 9.6E-08 65.0 2.5 27 853-879 3-29 (179)
422 3llm_A ATP-dependent RNA helic 95.9 0.002 6.8E-08 69.5 1.4 66 309-377 163-229 (235)
423 2q6t_A DNAB replication FORK h 95.9 0.0098 3.3E-07 70.6 7.5 125 845-1026 190-318 (444)
424 1l8q_A Chromosomal replication 95.9 0.0066 2.3E-07 68.7 5.8 45 984-1028 96-141 (324)
425 2q6t_A DNAB replication FORK h 95.9 0.018 6.2E-07 68.2 9.7 38 148-185 187-224 (444)
426 3bgw_A DNAB-like replicative h 95.8 0.0073 2.5E-07 71.5 6.0 33 845-877 187-219 (444)
427 1cke_A CK, MSSA, protein (cyti 95.8 0.003 1E-07 67.4 2.5 57 855-911 5-74 (227)
428 2qag_A Septin-2, protein NEDD5 95.8 0.00058 2E-08 78.8 -3.3 32 842-879 30-61 (361)
429 2qor_A Guanylate kinase; phosp 95.8 0.003 1E-07 66.4 2.4 27 853-879 10-36 (204)
430 3m6a_A ATP-dependent protease 95.8 0.0015 5.2E-08 79.5 0.1 48 843-893 97-144 (543)
431 2ohf_A Protein OLA1, GTP-bindi 95.8 0.0046 1.6E-07 71.5 3.9 31 154-184 15-45 (396)
432 2b8t_A Thymidine kinase; deoxy 95.8 0.014 4.7E-07 62.3 7.4 53 986-1043 89-150 (223)
433 2p5t_B PEZT; postsegregational 95.8 0.0025 8.5E-08 69.6 1.6 39 157-200 28-66 (253)
434 3ice_A Transcription terminati 95.8 0.003 1E-07 72.0 2.1 33 153-185 166-198 (422)
435 1j8m_F SRP54, signal recogniti 95.7 0.0037 1.3E-07 69.9 2.6 44 152-199 89-133 (297)
436 1lv7_A FTSH; alpha/beta domain 95.7 0.0054 1.8E-07 66.9 3.8 35 150-186 36-70 (257)
437 3cm0_A Adenylate kinase; ATP-b 95.7 0.0045 1.5E-07 63.7 2.9 27 159-185 2-28 (186)
438 2wji_A Ferrous iron transport 95.6 0.0089 3E-07 60.2 5.0 23 857-879 5-27 (165)
439 1y63_A LMAJ004144AAA protein; 95.6 0.004 1.4E-07 64.3 2.5 32 847-878 2-33 (184)
440 3t61_A Gluconokinase; PSI-biol 95.6 0.004 1.4E-07 65.2 2.5 25 161-185 18-42 (202)
441 1f6b_A SAR1; gtpases, N-termin 95.6 0.0021 7.2E-08 67.2 0.1 34 844-878 15-48 (198)
442 2qag_A Septin-2, protein NEDD5 95.6 0.0011 3.7E-08 76.5 -2.3 31 149-185 31-61 (361)
443 2if2_A Dephospho-COA kinase; a 95.6 0.0052 1.8E-07 64.4 3.0 21 163-183 3-23 (204)
444 1qhx_A CPT, protein (chloramph 95.5 0.0059 2E-07 62.3 3.2 26 161-186 3-28 (178)
445 3kb2_A SPBC2 prophage-derived 95.5 0.0052 1.8E-07 62.2 2.7 24 163-186 3-26 (173)
446 3d8b_A Fidgetin-like protein 1 95.5 0.041 1.4E-06 63.1 10.6 25 854-878 116-140 (357)
447 2wjg_A FEOB, ferrous iron tran 95.5 0.011 3.8E-07 60.5 5.2 22 857-878 9-30 (188)
448 2b8t_A Thymidine kinase; deoxy 95.5 0.051 1.7E-06 57.8 10.3 53 324-382 89-150 (223)
449 1ega_A Protein (GTP-binding pr 95.4 0.0056 1.9E-07 68.7 2.8 44 307-357 101-147 (301)
450 3d8b_A Fidgetin-like protein 1 95.3 0.11 3.6E-06 59.7 13.3 27 159-185 115-141 (357)
451 2if2_A Dephospho-COA kinase; a 95.3 0.0054 1.8E-07 64.3 2.2 21 857-877 3-23 (204)
452 1sxj_C Activator 1 40 kDa subu 95.3 0.0023 8E-08 73.1 -0.8 40 148-187 31-72 (340)
453 3r20_A Cytidylate kinase; stru 95.3 0.0067 2.3E-07 65.1 2.8 24 162-185 10-33 (233)
454 2v1u_A Cell division control p 95.3 0.02 6.8E-07 66.0 7.0 25 854-878 43-67 (387)
455 2wji_A Ferrous iron transport 95.2 0.0088 3E-07 60.2 3.3 23 163-185 5-27 (165)
456 1q3t_A Cytidylate kinase; nucl 95.2 0.0077 2.6E-07 64.9 3.0 28 158-185 13-40 (236)
457 2ze6_A Isopentenyl transferase 95.1 0.0088 3E-07 65.2 3.0 25 162-186 2-26 (253)
458 2rhm_A Putative kinase; P-loop 95.1 0.0097 3.3E-07 61.5 3.2 27 159-185 3-29 (193)
459 2ohf_A Protein OLA1, GTP-bindi 95.1 0.0072 2.5E-07 69.9 2.3 44 850-893 17-69 (396)
460 1np6_A Molybdopterin-guanine d 95.1 0.0092 3.2E-07 61.1 2.9 38 856-893 7-45 (174)
461 1kht_A Adenylate kinase; phosp 95.0 0.012 4E-07 60.7 3.4 26 161-186 3-28 (192)
462 3trf_A Shikimate kinase, SK; a 94.9 0.011 3.8E-07 60.7 2.9 26 160-185 4-29 (185)
463 2ga8_A Hypothetical 39.9 kDa p 94.9 0.0023 7.9E-08 72.6 -2.5 35 844-878 11-47 (359)
464 3cf0_A Transitional endoplasmi 94.8 0.013 4.4E-07 65.7 3.5 29 157-185 45-73 (301)
465 2qp9_X Vacuolar protein sortin 94.8 0.07 2.4E-06 61.1 9.8 27 159-185 82-108 (355)
466 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.18 6.1E-06 56.9 13.0 119 853-1042 43-176 (322)
467 2zej_A Dardarin, leucine-rich 94.8 0.012 4.2E-07 60.4 3.0 22 857-878 4-25 (184)
468 2plr_A DTMP kinase, probable t 94.8 0.013 4.4E-07 61.4 3.2 28 160-187 3-30 (213)
469 3bgw_A DNAB-like replicative h 94.8 0.036 1.2E-06 65.5 7.4 38 147-184 183-220 (444)
470 3t61_A Gluconokinase; PSI-biol 94.8 0.009 3.1E-07 62.5 1.9 24 855-878 18-41 (202)
471 2v54_A DTMP kinase, thymidylat 94.7 0.015 5.2E-07 60.6 3.6 26 160-185 3-28 (204)
472 2yvu_A Probable adenylyl-sulfa 94.7 0.012 4.2E-07 60.5 2.8 27 853-879 11-37 (186)
473 1via_A Shikimate kinase; struc 94.7 0.012 4E-07 60.0 2.6 23 163-185 6-28 (175)
474 2jaq_A Deoxyguanosine kinase; 94.7 0.013 4.4E-07 61.1 2.9 24 163-186 2-25 (205)
475 1xp8_A RECA protein, recombina 94.7 0.082 2.8E-06 60.7 9.7 118 852-1026 71-209 (366)
476 2zej_A Dardarin, leucine-rich 94.7 0.014 4.7E-07 59.9 3.0 23 163-185 4-26 (184)
477 3lw7_A Adenylate kinase relate 94.7 0.015 5.2E-07 58.6 3.2 19 163-181 3-21 (179)
478 3cm0_A Adenylate kinase; ATP-b 94.7 0.012 4.2E-07 60.3 2.6 25 853-877 2-26 (186)
479 1ypw_A Transitional endoplasmi 94.6 0.012 4E-07 75.1 2.8 32 156-187 233-264 (806)
480 1ly1_A Polynucleotide kinase; 94.6 0.017 5.8E-07 58.8 3.5 22 162-183 3-24 (181)
481 1ex7_A Guanylate kinase; subst 94.6 0.014 4.8E-07 60.4 2.8 25 162-186 2-26 (186)
482 2wjg_A FEOB, ferrous iron tran 94.6 0.016 5.5E-07 59.3 3.3 22 163-184 9-30 (188)
483 1m7g_A Adenylylsulfate kinase; 94.6 0.012 4.1E-07 62.1 2.3 39 852-892 22-62 (211)
484 1q57_A DNA primase/helicase; d 94.6 0.45 1.5E-05 57.1 16.5 177 151-382 232-440 (503)
485 2j9r_A Thymidine kinase; TK1, 94.6 0.14 4.8E-06 53.8 10.3 54 324-383 101-163 (214)
486 1gvn_B Zeta; postsegregational 94.5 0.017 5.8E-07 64.2 3.5 27 159-185 31-57 (287)
487 3iij_A Coilin-interacting nucl 94.5 0.016 5.5E-07 59.3 3.1 27 159-185 9-35 (180)
488 2c95_A Adenylate kinase 1; tra 94.5 0.014 4.8E-07 60.4 2.6 27 159-185 7-33 (196)
489 1xjc_A MOBB protein homolog; s 94.5 0.016 5.6E-07 58.8 2.9 25 162-186 5-29 (169)
490 1qhx_A CPT, protein (chloramph 94.5 0.017 5.8E-07 58.8 3.0 25 855-879 3-27 (178)
491 2bwj_A Adenylate kinase 5; pho 94.4 0.0074 2.5E-07 62.7 0.2 28 158-185 9-36 (199)
492 3cmw_A Protein RECA, recombina 94.4 0.049 1.7E-06 73.5 7.9 29 157-185 728-756 (1706)
493 2qz4_A Paraplegin; AAA+, SPG7, 94.4 0.072 2.5E-06 57.7 8.1 120 852-1043 36-175 (262)
494 1aky_A Adenylate kinase; ATP:A 94.4 0.018 6E-07 61.2 3.1 27 159-185 2-28 (220)
495 3kb2_A SPBC2 prophage-derived 94.4 0.017 5.8E-07 58.3 2.8 22 857-878 3-24 (173)
496 2wwf_A Thymidilate kinase, put 94.3 0.02 6.8E-07 60.1 3.4 27 159-185 8-34 (212)
497 3io5_A Recombination and repai 94.3 0.031 1.1E-06 62.2 5.0 121 852-1026 26-170 (333)
498 1q3t_A Cytidylate kinase; nucl 94.3 0.016 5.4E-07 62.4 2.5 26 853-878 14-39 (236)
499 2ffh_A Protein (FFH); SRP54, s 94.3 0.0071 2.4E-07 70.8 -0.3 45 846-894 91-135 (425)
500 1vht_A Dephospho-COA kinase; s 94.3 0.022 7.7E-07 60.2 3.6 24 160-183 3-26 (218)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5e-73 Score=756.72 Aligned_cols=214 Identities=27% Similarity=0.420 Sum_probs=179.6
Q ss_pred eeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
.+.|+|+++.++. .++.++|+|||++|+|||++||+||||||||||+++|.|... +.+|+|.|||.++
T Consensus 1076 ~I~f~nVsf~Y~~----------~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPE----------RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTT----------SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEET
T ss_pred eEEEEEEEEeCCC----------CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEh
Confidence 5889999887742 123469999999999999999999999999999999999876 5689999999987
Q ss_pred Ch---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcc-------cCCcccCCC
Q 000998 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1194)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~ 965 (1194)
.. ..+++.++||||++.++.+ |++||+.|+. -|.+.+. +.++++++..++.+. .|+.+|..|
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gl---d~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGL---DPSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSS---CTTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred hhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccC---CCCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCCC
Confidence 54 5678899999999999875 9999998752 1223332 346778887777543 456666543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccC
Q 000998 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1194)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 1045 (1194)
.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|||+|+|+++ ....||+|+||+ +
T Consensus 1216 -~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld-~ 1290 (1321)
T 4f4c_A 1216 -TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS-N 1290 (1321)
T ss_dssp -CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-S
T ss_pred -cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEE-C
Confidence 5799999999999999999999999999999999999999999999864 5899999999987 457899999998 5
Q ss_pred cEEEEeCCC
Q 000998 1046 GELIYAGPL 1054 (1194)
Q Consensus 1046 G~~~~~g~~ 1054 (1194)
|+++..|+.
T Consensus 1291 G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 GTIIEKGTH 1299 (1321)
T ss_dssp SSEEEEECH
T ss_pred CEEEEECCH
Confidence 899999985
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.2e-67 Score=700.72 Aligned_cols=214 Identities=22% Similarity=0.359 Sum_probs=171.8
Q ss_pred eeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
.+.++|+++.++.. .+.++|+|||++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEc
Confidence 57888888766311 12468999999999999999999999999999999999876 5689999999986
Q ss_pred Ch---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcc-------cCCcccCCC
Q 000998 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1194)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~~ 965 (1194)
.. ...++.+|||+|++.+++ .||+||+.++...+ .... +.++++++..++.+. .|+.+|..
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTT-
T ss_pred ccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCH----HHHHHHHHHhCcHHHHHhCccccccccCCC-
Confidence 53 346778999999998764 69999998753211 1222 224445555554432 34455543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccC
Q 000998 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1194)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 1045 (1194)
+..|||||||||+|||||+++|+||+|||||||||+.+...|++.|+++ .+|+|||+++|+++. + ..|||+++|+ +
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~-~ 1244 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQ-N 1244 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEE-T
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEE-C
Confidence 3579999999999999999999999999999999999999999999885 469999999999873 4 6699999998 5
Q ss_pred cEEEEeCCC
Q 000998 1046 GELIYAGPL 1054 (1194)
Q Consensus 1046 G~~~~~g~~ 1054 (1194)
|+++..|+.
T Consensus 1245 G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 GKVKEHGTH 1253 (1284)
T ss_dssp BEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999985
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=8.3e-58 Score=562.20 Aligned_cols=188 Identities=25% Similarity=0.279 Sum_probs=157.8
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHH
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 923 (1194)
.|+++|+++++||++||+||||||||||+++|+|..+ +.+|+|.+ .+.+||++|+....+.+||.|++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE----------eeEEEEEecCccCCCCCcHHHHH
Confidence 5889999999999999999999999999999999876 45788765 23589999998777889999988
Q ss_pred HHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000998 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1194)
Q Consensus 924 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1194)
.+..... ....+.++++++.+++.+..+..+ ..|||||||||+||++|+.+|+||||||||+|||+.+
T Consensus 439 ~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 439 SKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence 6531100 011245788999999988777654 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEcc-CcEEEEeCCCCC
Q 000998 1004 AAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGS 1056 (1194)
Q Consensus 1004 ~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~-gG~~~~~g~~~~ 1056 (1194)
+..++++|++++ +.|.|||+++||++ .+...+|++++|+. .|+++..|++.+
T Consensus 507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 507 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 999999999996 46999999999976 46678999999972 267778888753
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-57 Score=552.00 Aligned_cols=188 Identities=26% Similarity=0.295 Sum_probs=156.3
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHH
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 923 (1194)
.|+++|+++++||++||+||||||||||+++|+|..+ +.+|+|.+ ...+||++|+....+.+||.|++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE----------CceEEEEecCCcCCCCCcHHHHH
Confidence 5889999999999999999999999999999999876 45788765 23589999998777889999987
Q ss_pred HHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000998 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1194)
Q Consensus 924 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1194)
......... ..+.++++++.+++.+..+..+ ..|||||||||+||++|+.+|+||||||||+|||+.+
T Consensus 369 ~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 369 SKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccCCC-------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 643111100 1245678888888877666654 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEcc-CcEEEEeCCCCC
Q 000998 1004 AAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGS 1056 (1194)
Q Consensus 1004 ~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-gG~~~~~g~~~~ 1056 (1194)
+..+++.|+++++ .|.|||+++||++ .+...||++++|.+ .|+++..|++.+
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 9999999999874 5999999999976 46778999999973 267788888743
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4e-56 Score=540.62 Aligned_cols=202 Identities=23% Similarity=0.249 Sum_probs=162.2
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHH
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 923 (1194)
.|+++|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|. .++|++|+.......||+|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC---------CEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe---------eeEeechhcccccCCCHHHHH
Confidence 5778899999999999999999999999999999876 45899987653 479999987766789999999
Q ss_pred HHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000998 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1194)
Q Consensus 924 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1194)
.+....... . ....++++++.+++.+..+..+ ..|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 352 ~~~~~~~~~-~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 352 ENASKDALS-T-----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp HHHCSSTTC-T-----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHhhhhccc-h-----hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 874211110 1 1234678888889888777654 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEccC-cEEEEeCCCCCchhHHHHHHHhc
Q 000998 1004 AAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG-GELIYAGPLGSKSCELIKYFEAV 1068 (1194)
Q Consensus 1004 ~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~g-G~~~~~g~~~~~~~~~~~~f~~~ 1068 (1194)
+..++++|+++++ .|.|||+++||++ .+...|||+++|+.+ |.....+++......+..|+..+
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhc
Confidence 9999999999975 5999999999976 466789999999731 34555555543333445566655
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.7e-55 Score=551.48 Aligned_cols=214 Identities=22% Similarity=0.232 Sum_probs=136.0
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHH---------------------HHHhcCcCCCC----ceeeEEEECCcc
Q 000998 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLL---------------------LALAGRLGHHL----QVSGKITYNGHG 201 (1194)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~L~G~l~~~~----~~~G~i~~~G~~ 201 (1194)
+..+|+|||++|++||+++|+||||||||||+ +++.|...++. ...|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 77777766542 125677777765
Q ss_pred CCCCCCCceEEEEecCCC-------------------CCCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCc
Q 000998 202 FKEFVPPRTSAYVSQQDW-------------------QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262 (1194)
Q Consensus 202 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 262 (1194)
.... +++.++||+|... .++.+||+||+.+.......... .+.. . .
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~----~~~~------~----~ 174 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKE----AQIA------R----L 174 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhh----hHHH------H----H
Confidence 4322 2344555555432 24678999999874321100000 0000 0 0
Q ss_pred hHHHHHHHhhccCcchhHHHHHHHHHhCCccc-ccccccCccCCCCChhhhhHHHHHHHHhCCCc--EeEEecCCCCCCH
Q 000998 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDS 339 (1194)
Q Consensus 263 d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~--vlllDEptsgLD~ 339 (1194)
...+... ...+++.+||.+. .|..++ .|||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 175 -----------~~~~~~~-~~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 175 -----------ILREIRD-RLGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHH-HHHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -----------HHHHHHH-HHHHHHHcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 0000111 2246889999864 466554 599999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhH
Q 000998 340 STTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSV 395 (1194)
Q Consensus 340 ~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~ 395 (1194)
.++.++++.|+++.+. +.+|+.++|+...+ ..||+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRDL--GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHHT--TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 9999999999998753 45566688888765 569999999 89999999987765
No 7
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.9e-55 Score=554.40 Aligned_cols=183 Identities=21% Similarity=0.305 Sum_probs=149.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCC-CCCCCCCH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD-WQVAEMTV 226 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 226 (1194)
+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 222 3433211 12468999874 67889999
Q ss_pred HHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccccCccCC
Q 000998 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLK 305 (1194)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 305 (1194)
.|++.+ ...+ . ..+++.+|+.+||. +..+..++
T Consensus 514 ~e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--hhcC--H-------------------------------------HHHHHHHHHHcCCChhhhcCCcc-----
Confidence 999975 1110 0 12367789999995 56666665
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000998 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1194)
Q Consensus 306 ~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1194)
.|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++ . +++|+.++|+..++.+++|+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 5999999999999999999999999999999999999999999986 2 4556668899999999999999999999
Q ss_pred EE-EecChhhH
Q 000998 386 IV-YQGPRVSV 395 (1194)
Q Consensus 386 iv-~~G~~~~~ 395 (1194)
++ +.|+.+++
T Consensus 623 iv~~~G~~~e~ 633 (986)
T 2iw3_A 623 LRKYKGNFTEF 633 (986)
T ss_dssp EEEEESCHHHH
T ss_pred eecCCCCHHHH
Confidence 97 78987655
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-54 Score=531.14 Aligned_cols=201 Identities=18% Similarity=0.185 Sum_probs=159.9
Q ss_pred EEeeeeeEEEeCC-----cEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCC
Q 000998 843 QLLVNVTGAFRPG-----VLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGL 917 (1194)
Q Consensus 843 ~iL~~vs~~i~~G-----e~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 917 (1194)
.+++++|+++++| |++||+||||||||||+++|+|..+ +.+|+. . ....++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~----~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------I----PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------C----CSCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------c----cCCcEEEecccccccCCc
Confidence 4678889888888 7899999999999999999999876 345642 1 123589999987766678
Q ss_pred cHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000998 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1194)
Q Consensus 918 Tv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1194)
||+|++.... +. ... ....++++++.+++.+..+..+ ..|||||||||+|||+|+.+|+||||||||+
T Consensus 429 tv~e~~~~~~--~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--RG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--SS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--hc--ccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875422 11 111 1235678999999998877654 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEcc-CcEEEEeCCCCCchhHHHHHHHhc
Q 000998 998 GLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGSKSCELIKYFEAV 1068 (1194)
Q Consensus 998 gLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~-gG~~~~~g~~~~~~~~~~~~f~~~ 1068 (1194)
|||+.++..++++|++++ +.|.|||++|||++ .+...+||+++|+. .|+++..|++.+.......+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 999999999999999986 45999999999976 46778999999984 278899998864333333455555
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.4e-42 Score=391.54 Aligned_cols=218 Identities=24% Similarity=0.299 Sum_probs=187.4
Q ss_pred eeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
-+.++|+++.+.. ..+...+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~---------~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQ---------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEEC---------SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCC---------CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4667777766531 1124679999999999999999999999999999999999877 4689999999986
Q ss_pred Chh------cccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCC
Q 000998 896 RQE------TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969 (1194)
Q Consensus 896 ~~~------~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~L 969 (1194)
... ..++.+|||+|++.+++.+||+||+.|+...+. ....+.+++++++++.++|.+..+..+ .+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 431 235679999999999999999999999876542 345666778999999999998887654 589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEccCcEE
Q 000998 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGEL 1048 (1194)
Q Consensus 970 SgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~ 1048 (1194)
||||||||+|||||+.+|+||||||||||||+.++..|+++|+++.+ .|.|||++||+++ .+...|||+++|+ +|++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~-~G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 99999999999999999999999999999999999999999999975 4999999999976 4667899999998 5899
Q ss_pred EEeCCC
Q 000998 1049 IYAGPL 1054 (1194)
Q Consensus 1049 ~~~g~~ 1054 (1194)
++.|+.
T Consensus 243 v~~g~~ 248 (366)
T 3tui_C 243 IEQDTV 248 (366)
T ss_dssp EECCBH
T ss_pred EEEcCH
Confidence 999975
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.6e-41 Score=424.12 Aligned_cols=196 Identities=27% Similarity=0.412 Sum_probs=145.1
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHH---------hhhcCCCC--C--CeeE------EEEEEcCccCChhc-----
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLM---------DVLAGRKT--G--GIIE------GDIYISGYPKRQET----- 899 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl---------~~L~g~~~--~--~~~~------G~i~i~g~~~~~~~----- 899 (1194)
.|+|||++|++|+++||+|+||||||||+ +.+.+... + .... +-+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 47899999999999999999999999997 33333211 1 1223 33555554431100
Q ss_pred ---------------------------------------ccceeeEeecCCCCCCC------------------------
Q 000998 900 ---------------------------------------FARISGYCEQNDIHSPG------------------------ 916 (1194)
Q Consensus 900 ---------------------------------------~~~~~gyv~Q~~~~~~~------------------------ 916 (1194)
..+..||+.|+..++|.
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 00124778777666553
Q ss_pred --------CcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCC-
Q 000998 917 --------LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP- 987 (1194)
Q Consensus 917 --------lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p- 987 (1194)
+||.|++.|... . .....+.++++.+||.... .+.+ +..|||||||||+|||||+.+|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 678888876431 1 1223467888999986432 1222 3589999999999999999876
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEc-----cCcEEEEeCCC
Q 000998 988 --SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1194)
Q Consensus 988 --~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~gG~~~~~g~~ 1054 (1194)
+||||||||+|||+.+...+++.|++++++|.|||+|+|+++ ....+|++++|. +||++++.|++
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999988999999999964 557799999992 37999999986
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.9e-41 Score=370.73 Aligned_cols=204 Identities=25% Similarity=0.390 Sum_probs=174.8
Q ss_pred eEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh---c----ccceeeEeecCCCCC
Q 000998 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGYCEQNDIHS 914 (1194)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~~~ 914 (1194)
..+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.+|||+|++.++
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 579999999999999999999999999999999999877 5689999999876421 1 234699999999999
Q ss_pred CCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCccc-CCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000998 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1194)
Q Consensus 915 ~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1194)
+.+||+||+.++...+........+..+.+.++++.+++.+.. +.. +.+|||||||||+|||||+.+|++||||
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999999999976544222334555667788999999997643 544 3589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCCC
Q 000998 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1194)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1194)
|||+|||+.++..+++.|++++++ |+|||++||+++ +.+.||++++|+ +|+++..++..
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~-~G~i~~~~~~~ 230 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLK-DGEVEREEKLR 230 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEE-TTEEEEEEECC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEE-CCEEEEEcChh
Confidence 999999999999999999999765 999999999975 457899999998 48999888764
No 12
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.8e-41 Score=376.37 Aligned_cols=215 Identities=25% Similarity=0.348 Sum_probs=182.8
Q ss_pred eEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000998 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1194)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 896 (1194)
+.++|+++.++ ++..+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 8 l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~ 73 (275)
T 3gfo_A 8 LKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPID 73 (275)
T ss_dssp EEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECC
Confidence 56667666541 23469999999999999999999999999999999999876 46899999999873
Q ss_pred --h---hcccceeeEeecCCC-CCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCC
Q 000998 897 --Q---ETFARISGYCEQNDI-HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970 (1194)
Q Consensus 897 --~---~~~~~~~gyv~Q~~~-~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 970 (1194)
. ..+++.+|||+|++. .+..+||+||+.|+.... ..+..+..++++++++.++|.+..+..+ ..||
T Consensus 74 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (275)
T 3gfo_A 74 YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLS 145 (275)
T ss_dssp CSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSC
T ss_pred cccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCC
Confidence 2 235678999999863 345789999999987543 2345566678999999999998887764 5899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEE
Q 000998 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1194)
Q Consensus 971 gGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~ 1049 (1194)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++ ++|.|||++||+++ .+...||++++|+ +|+++
T Consensus 146 gGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~-~G~i~ 223 (275)
T 3gfo_A 146 FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMK-EGRVI 223 (275)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEE
Confidence 999999999999999999999999999999999999999999997 56999999999987 4667899999998 58999
Q ss_pred EeCCCC
Q 000998 1050 YAGPLG 1055 (1194)
Q Consensus 1050 ~~g~~~ 1055 (1194)
+.|++.
T Consensus 224 ~~g~~~ 229 (275)
T 3gfo_A 224 LQGNPK 229 (275)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999863
No 13
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.1e-41 Score=390.37 Aligned_cols=204 Identities=27% Similarity=0.392 Sum_probs=181.8
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh-cccceeeEeecCCCCCCCCc
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLT 918 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lT 918 (1194)
++..+|+||||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..++.+|||+|++.++|.+|
T Consensus 14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~lt 91 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 91 (381)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSC
T ss_pred CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCC
Confidence 56789999999999999999999999999999999999887 5699999999986532 33567999999999999999
Q ss_pred HHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000998 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1194)
Q Consensus 919 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1194)
|+||+.|+...+. ...++.+++++++++.++|.+..+..+ .+|||||||||+|||||+.+|+||||||||||
T Consensus 92 V~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~ 163 (381)
T 3rlf_A 92 VAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (381)
T ss_dssp HHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 9999999876542 345666778999999999998888764 58999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCCC
Q 000998 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1194)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1194)
||+..+..+++.|+++.++ |.|||++|||++ ++...+||+++|+ +|+++..|++.
T Consensus 164 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~-~G~i~~~g~~~ 219 (381)
T 3rlf_A 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKPL 219 (381)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEEeCHH
Confidence 9999999999999999765 999999999976 6778899999998 58999999863
No 14
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.3e-41 Score=389.78 Aligned_cols=205 Identities=25% Similarity=0.395 Sum_probs=178.8
Q ss_pred ccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC----Ch-hcccceeeEeecCCCC
Q 000998 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK----RQ-ETFARISGYCEQNDIH 913 (1194)
Q Consensus 839 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~----~~-~~~~~~~gyv~Q~~~~ 913 (1194)
+++..+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++ .. ...++.+|||+|++.+
T Consensus 14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l 91 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVL 91 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhhCCEEEEeCCCcC
Confidence 356789999999999999999999999999999999999877 5699999999875 21 2345789999999999
Q ss_pred CCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000998 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1194)
Q Consensus 914 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1194)
+|.+||+||+.|+...+. ....+.+++++++++.++|.++.+..+ .+|||||||||+|||||+.+|+|||||
T Consensus 92 ~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 92 FPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp CTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999999999765432 233455677899999999999888764 589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCCC
Q 000998 994 EPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1194)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1194)
|||||||+..+..+++.|+++. +.|.|||++|||++ ++...+||+++|+ +|+++..|++.
T Consensus 164 EPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~-~G~i~~~g~~~ 224 (359)
T 3fvq_A 164 EPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMK-QGRILQTASPH 224 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEE-CCEEEEEeCHH
Confidence 9999999999999999888775 46999999999976 5778899999998 58999999863
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4.2e-41 Score=372.83 Aligned_cols=213 Identities=28% Similarity=0.380 Sum_probs=181.3
Q ss_pred eEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000998 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1194)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 896 (1194)
+.++|+++.+ +++.+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 25 l~i~~l~~~y-------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~ 89 (263)
T 2olj_A 25 IDVHQLKKSF-------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLK 89 (263)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESS
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 5666666544 44679999999999999999999999999999999999876 46899999998763
Q ss_pred --h---hcccceeeEeecCCCCCCCCcHHHHHHHHh-hhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCC
Q 000998 897 --Q---ETFARISGYCEQNDIHSPGLTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970 (1194)
Q Consensus 897 --~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LS 970 (1194)
. ..+++.+|||+|++.+++.+||+||+.|+. ..+ .....+..+.++++++.++|.+..+..+ ..||
T Consensus 90 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 161 (263)
T 2olj_A 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLS 161 (263)
T ss_dssp STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSC
T ss_pred CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCC
Confidence 1 224567999999999999999999999864 322 1233444567889999999988877654 5899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEE
Q 000998 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050 (1194)
Q Consensus 971 gGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~ 1050 (1194)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |++++
T Consensus 162 gGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 239 (263)
T 2olj_A 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIE 239 (263)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999976 46678999999984 79998
Q ss_pred eCCC
Q 000998 1051 AGPL 1054 (1194)
Q Consensus 1051 ~g~~ 1054 (1194)
.|+.
T Consensus 240 ~g~~ 243 (263)
T 2olj_A 240 EGKP 243 (263)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8875
No 16
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.5e-41 Score=385.04 Aligned_cols=207 Identities=21% Similarity=0.317 Sum_probs=180.9
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC------CceEEEEecCCCC
Q 000998 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQ 220 (1194)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~------~~~~~yv~Q~d~~ 220 (1194)
..++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 467999999999999999999999999999999999999886 9999999999876532 3579999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 000998 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1194)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1194)
++.+||+||+.|+.+..+... .+...+++++|+.+||.+.++..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh
Confidence 999999999999866543210 0112357889999999988776654
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000998 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1194)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1194)
.|||||||||+|||||+.+|++|||||||||||+.++..|++.|+++.+..+ ++|+.++|...++..+||+|++
T Consensus 163 -----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g-~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 163 -----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp -----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEE
Confidence 6999999999999999999999999999999999999999999999976544 5566688999999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 000998 381 LSEGQIVYQGPRVSVL 396 (1194)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1194)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999998874
No 17
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=6e-41 Score=364.22 Aligned_cols=201 Identities=24% Similarity=0.325 Sum_probs=173.8
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh------ccc-ceeeEeecCCC
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFA-RISGYCEQNDI 912 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~-~~~gyv~Q~~~ 912 (1194)
+++.+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... .++ +.+|||+|++.
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (224)
T 2pcj_A 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHY 92 (224)
T ss_dssp TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCC
T ss_pred CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcc
Confidence 44679999999999999999999999999999999999876 4689999999876421 122 57999999999
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000998 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1194)
Q Consensus 913 ~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1194)
+++.+||+||+.|....+. ....+..+.++++++.+++.+..+..+ .+|||||||||+|||||+.+|++|+|
T Consensus 93 l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllL 164 (224)
T 2pcj_A 93 LIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YELSGGEQQRVAIARALANEPILLFA 164 (224)
T ss_dssp CCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred cCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999998765432 233444567889999999988877654 58999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCC
Q 000998 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1194)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1194)
||||+|||+.++..+++.|++++++|+|||++|||++ ..+.||++++|++ |++++.|+
T Consensus 165 DEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 165 DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--LAELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEee
Confidence 9999999999999999999999877999999999965 3478999999984 79998886
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-41 Score=373.66 Aligned_cols=203 Identities=23% Similarity=0.310 Sum_probs=175.5
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh----------------hcccce
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------------ETFARI 903 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~ 903 (1194)
+++.+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 94 (262)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccccccccccccccChhhHHHHhcc
Confidence 45679999999999999999999999999999999999876 468999999987641 124567
Q ss_pred eeEeecCCCCCCCCcHHHHHHHHh-hhcCCCcCcHHHHHHHHHHHHHHcCCCcc-cCCcccCCCCCCCCHHHHHHHHHHH
Q 000998 904 SGYCEQNDIHSPGLTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAV 981 (1194)
Q Consensus 904 ~gyv~Q~~~~~~~lTv~e~l~f~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia~ 981 (1194)
+|||+|++.+++.+||+||+.|+. ..+ .....+.++.++++++.++|.+. .+..+ .+|||||||||+|||
T Consensus 95 i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGq~qRv~lAr 166 (262)
T 1b0u_A 95 LTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIAR 166 (262)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHHH
T ss_pred eEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCc-----ccCCHHHHHHHHHHH
Confidence 999999999999999999999864 322 12334445678999999999887 77654 589999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 982 ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 982 aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|.+ |+++..|+.
T Consensus 167 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 167 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999877999999999976 46678999999984 799988874
No 19
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=4.5e-40 Score=412.11 Aligned_cols=195 Identities=29% Similarity=0.390 Sum_probs=148.2
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhhhc-C-C---------CCCC--eeEE------EEEEcCccCChhc-----
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA-G-R---------KTGG--IIEG------DIYISGYPKRQET----- 899 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g-~---------~~~~--~~~G------~i~i~g~~~~~~~----- 899 (1194)
.|+|||++|++||++||+|+||||||||+++|+ | . ..+. .+.| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 488999999999999999999999999999964 1 1 1111 2344 5889987753100
Q ss_pred -----------------ccceeeEeecCCCCC----------------------C-------------------------
Q 000998 900 -----------------FARISGYCEQNDIHS----------------------P------------------------- 915 (1194)
Q Consensus 900 -----------------~~~~~gyv~Q~~~~~----------------------~------------------------- 915 (1194)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 023457877743221 1
Q ss_pred -------CCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000998 916 -------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1194)
Q Consensus 916 -------~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p 987 (1194)
.+|+.|++.|... ... ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IPK---IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CHH---HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------chh---HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 4578888776321 111 123567899999976 44443 3589999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEc-----cCcEEEEeCCC
Q 000998 988 ---SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1194)
Q Consensus 988 ---~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~gG~~~~~g~~ 1054 (1194)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|++++|. ++|++++.|++
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999965 457899999994 36899998875
No 20
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.3e-41 Score=369.32 Aligned_cols=203 Identities=22% Similarity=0.317 Sum_probs=175.5
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh--hcccceeeEeecCCCCCCCC
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~l 917 (1194)
+++.+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.+++.+
T Consensus 26 ~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 44679999999999999999999999999999999999876 468999999987642 23456799999999999999
Q ss_pred cHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000998 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1194)
Q Consensus 918 Tv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1194)
||+||+.|...+.. ....+..+.++++++.++|.+..+..+ ..|||||||||+|||||+.+|+||||||||+
T Consensus 104 tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 104 QGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp BHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred cHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99999998764432 223334466889999999988877654 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
|||+.++..+++.|++++++|+|||++||+++ .+...||++++|.+ |++++.|+.
T Consensus 176 ~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 230 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 230 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999877999999999975 35567999999984 799988874
No 21
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2e-40 Score=379.77 Aligned_cols=206 Identities=22% Similarity=0.350 Sum_probs=178.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccC----CCCC-CCceEEEEecCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF----KEFV-PPRTSAYVSQQDWQVA 222 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~----~~~~-~~~~~~yv~Q~d~~~~ 222 (1194)
.++|+|||++|++||+++|+|||||||||||++|+|++.|+ +|+|.++|.++ .... .++.+|||+|++.++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999886 99999999987 2222 2467999999999999
Q ss_pred CCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 000998 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1194)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1194)
.+||+||+.|+.+.++... .+...+++++++.+||++..|..++
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~-- 137 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYPH-- 137 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCGG--
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCChh--
Confidence 9999999999865432111 0112357889999999988877664
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000998 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1194)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1194)
.|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|+
T Consensus 138 ---~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~-g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 138 ---ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN-GKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 699999999999999999999999999999999999999999888876554 4566678999999999999999999
Q ss_pred CCeEEEecChhhHH
Q 000998 383 EGQIVYQGPRVSVL 396 (1194)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1194)
+|+++..|+++++.
T Consensus 214 ~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 214 QGRILQTASPHELY 227 (359)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEEeCHHHHH
Confidence 99999999998874
No 22
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=6.5e-41 Score=371.72 Aligned_cols=206 Identities=25% Similarity=0.309 Sum_probs=175.2
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeeEeecCCCCCC
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSP 915 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~ 915 (1194)
+++++|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.+++
T Consensus 18 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 95 (257)
T 1g6h_A 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 95 (257)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG
T ss_pred CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCC
Confidence 44679999999999999999999999999999999999876 468999999987643 123457999999998889
Q ss_pred CCcHHHHHHHHhhh-cCCC---------cCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhh
Q 000998 916 GLTVLESLLFSAWL-RLPS---------EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1194)
Q Consensus 916 ~lTv~e~l~f~~~l-r~~~---------~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~ 985 (1194)
.+||+||+.++... +... .....+..+.++++++.+++.+..+..+ ..|||||||||+|||||+.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkQrv~iAraL~~ 170 (257)
T 1g6h_A 96 EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GELSGGQMKLVEIGRALMT 170 (257)
T ss_dssp GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-----hhCCHHHHHHHHHHHHHHc
Confidence 99999999986532 1110 0112334466889999999988877654 5899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
+|+||+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|+ +|++++.|+.
T Consensus 171 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~-~G~i~~~g~~ 237 (257)
T 1g6h_A 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMF-NGQIIAEGRG 237 (257)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEE-TTEEEEEEES
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEEeCH
Confidence 99999999999999999999999999999877999999999987 4667899999998 4799988876
No 23
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.2e-40 Score=382.03 Aligned_cols=202 Identities=25% Similarity=0.384 Sum_probs=178.2
Q ss_pred ceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeeEeecCCCCCCCCcH
Q 000998 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTV 919 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv 919 (1194)
++.+|+||||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|+..++|.+||
T Consensus 27 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 3468999999999999999999999999999999999877 568999999988643 2345789999999999999999
Q ss_pred HHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000998 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1194)
Q Consensus 920 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1194)
+||+.|+...+. ....+.+++++++++.++|.++.+..+ .+|||||||||+|||||+.+|+|||||||||||
T Consensus 105 ~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~L 176 (355)
T 1z47_A 105 YDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAI 176 (355)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCS
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 999999876542 234555678899999999998888764 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
|+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|+ +|+++..|++
T Consensus 177 D~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g~~ 230 (355)
T 1z47_A 177 DTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLH-EGNVEQFGTP 230 (355)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 999999999999999765 999999999976 5778899999998 5899998875
No 24
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3e-40 Score=380.76 Aligned_cols=206 Identities=24% Similarity=0.359 Sum_probs=181.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC-CceEEEEecCCCCCCCCCH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1194)
..+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 46999999999999999999999999999999999999886 9999999998876544 4679999999999999999
Q ss_pred HHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 000998 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1194)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1194)
+|||.|+.+..+... .+.+.+++++++.+||++..+..+. .
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p~-----~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKPK-----A 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCGG-----G
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----H
Confidence 999999876543110 0113358889999999988776654 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000998 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1194)
Q Consensus 307 LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1194)
|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 5566689999999999999999999999
Q ss_pred EEecChhhHH
Q 000998 387 VYQGPRVSVL 396 (1194)
Q Consensus 387 v~~G~~~~~~ 396 (1194)
+..|+++++.
T Consensus 213 ~~~g~~~~l~ 222 (381)
T 3rlf_A 213 AQVGKPLELY 222 (381)
T ss_dssp EEEECHHHHH
T ss_pred EEEeCHHHHH
Confidence 9999999874
No 25
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-40 Score=381.60 Aligned_cols=204 Identities=26% Similarity=0.362 Sum_probs=178.0
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh-cccceeeEeecCCCCCCCCc
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLT 918 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lT 918 (1194)
+++.+|+||||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..++.+|||+|++.++|.+|
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSC
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 45679999999999999999999999999999999999877 4689999999886432 23567999999999999999
Q ss_pred HHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000998 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1194)
Q Consensus 919 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1194)
|+||+.|+...+ .....+.+++++++++.++|.+..+..+ .+|||||||||+|||||+.+|++|||||||||
T Consensus 92 v~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 92 VFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp HHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 999999975433 2233444567899999999998887764 58999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCCC
Q 000998 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1194)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1194)
||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|+ +|+++..|++.
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~-~G~i~~~g~~~ 219 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFN-QGKLVQYGTPD 219 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999754 999999999975 5678899999998 58999988753
No 26
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.2e-40 Score=381.32 Aligned_cols=203 Identities=28% Similarity=0.373 Sum_probs=178.6
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh-cccceeeEeecCCCCCCCCc
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLT 918 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lT 918 (1194)
+++.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..++.+|||+|+..++|.+|
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (362)
T 2it1_A 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMT 91 (362)
T ss_dssp SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSC
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCC
Confidence 45679999999999999999999999999999999999877 4689999999886432 23567999999999999999
Q ss_pred HHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000998 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1194)
Q Consensus 919 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1194)
|+||+.|+...+. ....+.+++++++++.++|.++.+..+ .+|||||||||+|||||+.+|++|||||||||
T Consensus 92 v~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (362)
T 2it1_A 92 VYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIARALVKEPEVLLLDEPLSN 163 (362)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESGGGG
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 9999999865542 234555677899999999998887754 58999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|+ +|+++..|++
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g~~ 218 (362)
T 2it1_A 164 LDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIR-EGEILQVGTP 218 (362)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 9999999999999999754 999999999975 5778899999998 5899998875
No 27
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.5e-40 Score=369.76 Aligned_cols=212 Identities=23% Similarity=0.337 Sum_probs=181.0
Q ss_pred eEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000998 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1194)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 896 (1194)
+..+|+++.+ +++.+|+|||+++++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 12 l~~~~l~~~~-------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 76 (266)
T 4g1u_C 12 LEASHLHYHV-------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLN 76 (266)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETT
T ss_pred EEEEeEEEEe-------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence 5566666544 45789999999999999999999999999999999999876 45899999999864
Q ss_pred h---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHH
Q 000998 897 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ 973 (1194)
Q Consensus 897 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq 973 (1194)
. ...++.+||++|++.+++.+||+||+.|+..... ..+.++.++++++.+++.+..+..+ ..|||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq 146 (266)
T 4g1u_C 77 SWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDY-----RVLSGGE 146 (266)
T ss_dssp TSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHHH
T ss_pred cCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHH
Confidence 3 2345679999999988888999999998754331 1223456889999999998887754 5799999
Q ss_pred HHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEccCc
Q 000998 974 RKRLTIAVELVA------NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1194)
Q Consensus 974 rqrl~ia~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1194)
||||+|||||+. +|+||||||||+|||+.++..+++.|++++++ |+|||++|||++ .+...||++++|+ +|
T Consensus 147 ~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~-~G 224 (266)
T 4g1u_C 147 QQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLA-QG 224 (266)
T ss_dssp HHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEE-TT
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEE-CC
Confidence 999999999999 99999999999999999999999999999765 579999999976 4667899999998 58
Q ss_pred EEEEeCCCC
Q 000998 1047 ELIYAGPLG 1055 (1194)
Q Consensus 1047 ~~~~~g~~~ 1055 (1194)
++++.|+..
T Consensus 225 ~i~~~g~~~ 233 (266)
T 4g1u_C 225 KLVACGTPE 233 (266)
T ss_dssp EEEEEECHH
T ss_pred EEEEEcCHH
Confidence 999999864
No 28
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.3e-40 Score=382.18 Aligned_cols=203 Identities=27% Similarity=0.355 Sum_probs=178.4
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh-------hcccceeeEeecCCC
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDI 912 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~ 912 (1194)
+++.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|+..
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHhHCCEEEEeCCCc
Confidence 45679999999999999999999999999999999999877 568999999987532 123567999999999
Q ss_pred CCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000998 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1194)
Q Consensus 913 ~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illL 992 (1194)
++|.+||+||+.|+...+. ....+.+++++++++.++|.++.+..+ .+|||||||||+|||||+.+|+||||
T Consensus 92 l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLL 163 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLM 163 (372)
T ss_dssp CCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999876542 234555677899999999998887764 58999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
||||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|+ +|+++..|++
T Consensus 164 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g~~ 224 (372)
T 1g29_1 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGVLQQVGSP 224 (372)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEe-CCEEEEeCCH
Confidence 9999999999999999999999754 999999999976 5778899999998 5899999875
No 29
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-40 Score=363.05 Aligned_cols=202 Identities=23% Similarity=0.324 Sum_probs=171.0
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh---c-ccceeeEeecCCCCCC
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSP 915 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~~ 915 (1194)
+++.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.+||++|++.+++
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 94 (240)
T 1ji0_A 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCC
Confidence 34679999999999999999999999999999999999876 4689999999886431 1 2345999999999999
Q ss_pred CCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcC-CCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000998 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1194)
Q Consensus 916 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1194)
.+||+||+.|+..... ...+..+.++++++.++ +.+..+.. +..|||||||||+|||||+.+|+||+|||
T Consensus 95 ~ltv~enl~~~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~lllLDE 165 (240)
T 1ji0_A 95 ELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLSGGEQQMLAIGRALMSRPKLLMMDE 165 (240)
T ss_dssp TSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCcHHHHHHHhhhcCC----CHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 9999999998642111 11233456788889884 87766654 35899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|+ +|++++.|+.
T Consensus 166 Pts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~-~G~i~~~g~~ 223 (240)
T 1ji0_A 166 PSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLE-TGQIVLEGKA 223 (240)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEEEH
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 99999999999999999999878999999999975 4667899999998 4799988864
No 30
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8.4e-40 Score=357.65 Aligned_cols=208 Identities=18% Similarity=0.223 Sum_probs=170.7
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC-------CceEEEEecCCC
Q 000998 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1194)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1194)
..++|+|||+++++||+++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++||+|++.
T Consensus 17 ~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 93 (235)
T 3tif_A 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93 (235)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred ceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCc
Confidence 357999999999999999999999999999999999999886 9999999998866542 235999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccc-ccc
Q 000998 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA-DTL 298 (1194)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~ 298 (1194)
+++.+||+||+.++........... .+...++.++++.+||.+.. +..
T Consensus 94 l~~~~tv~enl~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (235)
T 3tif_A 94 LIPLLTALENVELPLIFKYRGAMSG-------------------------------EERRKRALECLKMAELEERFANHK 142 (235)
T ss_dssp CCTTSCHHHHHHHHHHTCSSSCCCH-------------------------------HHHHHHHHHHHHHTTCCGGGTTCC
T ss_pred cCCCCcHHHHHHHHHHhhhccCCCH-------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 9999999999998765331110000 01123477889999998743 554
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000998 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1194)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1194)
+ ..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..+. +|+.++|+.. +..+||+|
T Consensus 143 ~-----~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~-tvi~vtHd~~-~~~~~d~i 215 (235)
T 3tif_A 143 P-----NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGK-TVVVVTHDIN-VARFGERI 215 (235)
T ss_dssp G-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC-EEEEECSCHH-HHTTSSEE
T ss_pred h-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCC-EEEEEcCCHH-HHHhCCEE
Confidence 4 469999999999999999999999999999999999999999999998764344 4555778876 45899999
Q ss_pred EEEcCCeEEEecChhhH
Q 000998 379 ILLSEGQIVYQGPRVSV 395 (1194)
Q Consensus 379 ilL~~G~iv~~G~~~~~ 395 (1194)
++|++|+++..|+.+++
T Consensus 216 ~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 216 IYLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEEETTEEEEEEECC--
T ss_pred EEEECCEEEEEcChhhh
Confidence 99999999999987764
No 31
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=3.6e-39 Score=405.14 Aligned_cols=195 Identities=28% Similarity=0.387 Sum_probs=143.6
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhh-hcCCC-------CC----------------CeeEE-------EEEEcC
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDV-LAGRK-------TG----------------GIIEG-------DIYISG 892 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~-L~g~~-------~~----------------~~~~G-------~i~i~g 892 (1194)
.|+|||++|++||++||+|+||||||||+++ |+|.. .+ ....| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 4889999999999999999999999999997 76421 11 12467 789998
Q ss_pred ccCChhc-------------c---------cceeeEeec----------------------CCCCCC-------------
Q 000998 893 YPKRQET-------------F---------ARISGYCEQ----------------------NDIHSP------------- 915 (1194)
Q Consensus 893 ~~~~~~~-------------~---------~~~~gyv~Q----------------------~~~~~~------------- 915 (1194)
.++.... . .|..||.++ +..+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 7753110 0 111233221 111111
Q ss_pred -------------------CCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcc-cCCcccCCCCCCCCHHHHH
Q 000998 916 -------------------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRK 975 (1194)
Q Consensus 916 -------------------~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~~~~~~~~LSgGqrq 975 (1194)
.+|+.|++.|.. .. ...+.+.++++.++|... .+.. +..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~~---~~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------DE---SAIFRALDTLREVGLGYLRLGQP-----ATELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------TS---HHHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------cc---hHHHHHHHHHHHcCCCcccccCC-----cccCCHHHHH
Confidence 235555554421 11 112357889999999763 2333 3589999999
Q ss_pred HHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEc-----cCcE
Q 000998 976 RLTIAVELVAN---PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGE 1047 (1194)
Q Consensus 976 rl~ia~aL~~~---p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~gG~ 1047 (1194)
||+||++|+.+ |+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ....||++++|. ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~--~i~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ--VVAASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCCCCCCCE
Confidence 99999999996 6999999999999999999999999999988999999999965 347899999994 3689
Q ss_pred EEEeCCC
Q 000998 1048 LIYAGPL 1054 (1194)
Q Consensus 1048 ~~~~g~~ 1054 (1194)
+++.|+.
T Consensus 816 Iv~~g~~ 822 (842)
T 2vf7_A 816 LVAQGTP 822 (842)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9998875
No 32
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.4e-40 Score=381.14 Aligned_cols=203 Identities=24% Similarity=0.346 Sum_probs=171.7
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh-cccceeeEeecCCCCCCCCc
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLT 918 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lT 918 (1194)
+++.+|+||||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..+|.+|||+|+..++|.+|
T Consensus 22 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 99 (372)
T 1v43_A 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 99 (372)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC------CCC
T ss_pred CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 45679999999999999999999999999999999999877 5689999999886432 23567999999999999999
Q ss_pred HHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000998 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1194)
Q Consensus 919 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1194)
|+||+.|+...+ .....+.+++++++++.++|.++.+..+ .+|||||||||+|||||+.+|++|||||||||
T Consensus 100 v~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 171 (372)
T 1v43_A 100 VYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171 (372)
T ss_dssp HHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 999999975433 2334555677899999999998887754 58999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|+ +|+++..|++
T Consensus 172 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~-~G~i~~~g~~ 226 (372)
T 1v43_A 172 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMN-RGQLLQIGSP 226 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999765 999999999975 5678899999998 5899998875
No 33
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2e-40 Score=381.75 Aligned_cols=200 Identities=30% Similarity=0.416 Sum_probs=176.3
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh------hcccceeeEeecCCCCCCCC
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSPGL 917 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~~l 917 (1194)
+|+||||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|+..++|.+
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC
Confidence 9999999999999999999999999999999999877 568999999987532 23467899999999999999
Q ss_pred cHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000998 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1194)
Q Consensus 918 Tv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1194)
||+||+.|+...+ .....+.+++++++++.++|.+..+..+ .+|||||||||+|||||+.+|++||||||||
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lLLLDEP~s 169 (353)
T 1oxx_K 98 TAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFS 169 (353)
T ss_dssp CHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 9999999976543 2344555677899999999998888764 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCCC
Q 000998 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1194)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1194)
|||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|+ +|+++..|++.
T Consensus 170 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~-~G~i~~~g~~~ 226 (353)
T 1oxx_K 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV-KGKLVQVGKPE 226 (353)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 99999999999999999754 999999999976 5778899999998 58999988753
No 34
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=7e-40 Score=361.89 Aligned_cols=208 Identities=25% Similarity=0.309 Sum_probs=165.9
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcc-cceeeEeecCCCCCC
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF-ARISGYCEQNDIHSP 915 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~-~~~~gyv~Q~~~~~~ 915 (1194)
+++.+|+||||++++||++||+||||||||||+++|+|.....+.+|+|.++|.++.. ... ++.++|++|++.+++
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 3467999999999999999999999999999999999972112679999999987643 112 345899999999999
Q ss_pred CCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCC-CcccCCcccCCCCCC-CCHHHHHHHHHHHHHhhCCCEEEEe
Q 000998 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-TSLSGALIGLPGING-LSTEQRKRLTIAVELVANPSIVFMD 993 (1194)
Q Consensus 916 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l-~~~~~~~~~~~~~~~-LSgGqrqrl~ia~aL~~~p~illLD 993 (1194)
.+||+||+.+.............+..+.++++++.+++ .+..+..+ .. |||||||||+|||||+.+|+|||||
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqkQrv~iAraL~~~p~lllLD 168 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEKKRNEILQLLVLEPTYAVLD 168 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HHHHHHHHHHHHHCCSEEEEE
T ss_pred CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999886532111111223344668899999999 47777653 46 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEccCcEEEEeCCC
Q 000998 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~gG~~~~~g~~ 1054 (1194)
|||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|++ |++++.|+.
T Consensus 169 EPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~ 228 (250)
T 2d2e_A 169 ETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVVATGGP 228 (250)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEEEEESH
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEEEEeCH
Confidence 999999999999999999999767999999999986 34445 599999984 799998875
No 35
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.2e-39 Score=360.22 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=177.8
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1194)
.++|+|||++|++||+++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999886 9999999998876543 35699999999888899
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1194)
||+||+.|+...... .....+++.+++.+||.+..+..++
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDYR---- 140 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBGG----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCcc----
Confidence 999999987543210 0112347888999999988777654
Q ss_pred CCCChhhhhHHHHHHHHhC------CCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000998 305 KGISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1194)
Q Consensus 305 ~~LSGGqkqRvsia~al~~------~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1194)
.|||||||||+|||||+. +|++|+|||||+|||+.++.++++.|+++++. ++++|+.++|+.+++..+||+|
T Consensus 141 -~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 141 -VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp -GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHCSEE
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhCCEE
Confidence 599999999999999999 99999999999999999999999999998764 4567777999999999999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 000998 379 ILLSEGQIVYQGPRVSVL 396 (1194)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1194)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998863
No 36
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=7.7e-40 Score=364.75 Aligned_cols=206 Identities=25% Similarity=0.336 Sum_probs=174.5
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCC-----CCCceEEEEecCC-CCCC
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQD-WQVA 222 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~~ 222 (1194)
.+|+|||++|++||+++|+||||||||||+++|+|.++|. +|+|.++|.++... ..++.+|||+|++ ..+.
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 5999999999999999999999999999999999999886 99999999987421 1235799999996 3455
Q ss_pred CCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 000998 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1194)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1194)
.+||+||+.|+....+... .+...+++++++.+||.+..+..++
T Consensus 99 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 142 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPTH-- 142 (275)
T ss_dssp SSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBGG--
T ss_pred cCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCcc--
Confidence 7999999999765432110 0112347889999999988877664
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000998 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1194)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1194)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++.. +++|+.++|+..++..+||+|++|+
T Consensus 143 ---~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 143 ---CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEEE
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 599999999999999999999999999999999999999999999987333 4556668899999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 000998 383 EGQIVYQGPRVSVLD 397 (1194)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1194)
+|++++.|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999988753
No 37
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.3e-39 Score=357.64 Aligned_cols=205 Identities=22% Similarity=0.337 Sum_probs=174.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCC--CCC---CCceEEEEecCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFV---PPRTSAYVSQQDWQVA 222 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~ 222 (1194)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 36999999999999999999999999999999999999876 999999998874 111 1356999999999999
Q ss_pred CCCHHHHHHHhh-hccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 000998 223 EMTVRETLDFAG-QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1194)
Q Consensus 223 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1194)
.+||+||+.|+. +..+... .+...+++.+++.+||.+..+..++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~- 158 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPR----------------------------------EKAEAKAMELLDKVGLKDKAHAYPD- 158 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-
T ss_pred CCCHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-
Confidence 999999999854 2221100 0012347789999999988776654
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000998 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1194)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1194)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++. +++|+.++|+.+++..+||+|++|
T Consensus 159 ----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 159 ----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp ----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 59999999999999999999999999999999999999999999998754 455666889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 000998 382 SEGQIVYQGPRVSVL 396 (1194)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1194)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988774
No 38
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.5e-39 Score=351.50 Aligned_cols=200 Identities=23% Similarity=0.314 Sum_probs=170.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC-------CceEEEEecCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1194)
.++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 46999999999999999999999999999999999999876 9999999998765432 1569999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 000998 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1194)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1194)
++.+||+||+.|+....+... .+....++++++.+||.+..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPK----------------------------------KEAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh
Confidence 999999999998654322100 0012347789999999988777654
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000998 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1194)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1194)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. + ++|+.++|+...+ .+||+|++
T Consensus 140 -----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g-~tvi~vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 -----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-G-TSIVMVTHERELA-ELTHRTLE 211 (224)
T ss_dssp -----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T-CEEEEECSCHHHH-TTSSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEcCCHHHH-HhCCEEEE
Confidence 59999999999999999999999999999999999999999999998764 4 4555577887776 89999999
Q ss_pred EcCCeEEEecCh
Q 000998 381 LSEGQIVYQGPR 392 (1194)
Q Consensus 381 L~~G~iv~~G~~ 392 (1194)
|++|++++.|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999974
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=6.8e-40 Score=375.78 Aligned_cols=199 Identities=23% Similarity=0.289 Sum_probs=174.4
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeeEeecCCCCCCCCc
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lT 918 (1194)
+++ +|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.++|.+|
T Consensus 12 ~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 88 (348)
T 3d31_A 12 KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMN 88 (348)
T ss_dssp SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSC
T ss_pred CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCC
Confidence 445 9999999999999999999999999999999999877 568999999988643 224567999999999999999
Q ss_pred HHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000998 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1194)
Q Consensus 919 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1194)
|+||+.|+...+... .. ++++++++.++|.++.+..+ .+|||||||||+|||||+.+|++|+|||||||
T Consensus 89 v~enl~~~~~~~~~~---~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~ 157 (348)
T 3d31_A 89 VKKNLEFGMRMKKIK---DP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSA 157 (348)
T ss_dssp HHHHHHHHHHHHCCC---CH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTT
T ss_pred HHHHHHHHHHHcCCC---HH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 999999986554211 11 56889999999998888764 58999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 999 LDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 999 LD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
||+.++..+++.|+++.+ .|.|||++|||++ ++...+|++++|+ +|+++..|++
T Consensus 158 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~-~G~i~~~g~~ 212 (348)
T 3d31_A 158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVM-DGKLIQVGKP 212 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEES-SSCEEEEECH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999965 4999999999975 5778899999998 4789988875
No 40
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-39 Score=372.65 Aligned_cols=206 Identities=27% Similarity=0.358 Sum_probs=179.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC-CceEEEEecCCCCCCCCCH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1194)
.++|+|||+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999886 9999999998865443 4679999999999999999
Q ss_pred HHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 000998 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1194)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1194)
+||+.|+.+.++.. +. +.+.+++++++.+||++..+..++ .
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~-----~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------KD------------------------EVEKRVVEIARKLLIDNLLDRKPT-----Q 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------HH------------------------HTTHHHHHHHHHTTCGGGTTSCGG-----G
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 99999976543210 00 112357889999999988776654 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000998 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1194)
Q Consensus 307 LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1194)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG-ITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 4556688999999999999999999999
Q ss_pred EEecChhhHH
Q 000998 387 VYQGPRVSVL 396 (1194)
Q Consensus 387 v~~G~~~~~~ 396 (1194)
+..|+++++.
T Consensus 213 ~~~g~~~~l~ 222 (359)
T 2yyz_A 213 VQYGTPDEVY 222 (359)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999998874
No 41
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.9e-39 Score=372.09 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=178.4
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC-CceEEEEecCCCCCCCCCHH
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVR 227 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 227 (1194)
++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH
Confidence 5999999999999999999999999999999999999886 9999999998865433 46799999999999999999
Q ss_pred HHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000998 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1194)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1194)
||+.|+.+..+... .+.+.+++++++.+||++..+..++ .|
T Consensus 106 eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~-----~L 146 (355)
T 1z47_A 106 DNVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYANRFPH-----EL 146 (355)
T ss_dssp HHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCcc-----cC
Confidence 99999765432110 0112357889999999988776654 69
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 000998 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1194)
Q Consensus 308 SGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 387 (1194)
||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|+++
T Consensus 147 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG-VTSVFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999876544 45566889999999999999999999999
Q ss_pred EecChhhHH
Q 000998 388 YQGPRVSVL 396 (1194)
Q Consensus 388 ~~G~~~~~~ 396 (1194)
..|+++++.
T Consensus 226 ~~g~~~~l~ 234 (355)
T 1z47_A 226 QFGTPEEVY 234 (355)
T ss_dssp EEECHHHHH
T ss_pred EEcCHHHHH
Confidence 999998874
No 42
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=8.9e-40 Score=365.66 Aligned_cols=218 Identities=22% Similarity=0.375 Sum_probs=177.1
Q ss_pred eeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
.+.++|+++.+ +++.+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 21 ~l~~~~l~~~y-------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMK-------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCC
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 46677776554 34679999999999999999999999999999999999876 4689999999876
Q ss_pred C--h---hcccceeeEeecCCCCC--CCCcHHHHHHHHhhhcCC-CcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCC
Q 000998 896 R--Q---ETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967 (1194)
Q Consensus 896 ~--~---~~~~~~~gyv~Q~~~~~--~~lTv~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~ 967 (1194)
. . ..+++.+|||+|++.+. +.+||+||+.|+...... ......+..+.++++++.+++.+..+..+ .
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----G 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 4 2 23456799999987543 457999999885321100 00111233456889999999988877654 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCcHHHHHhcCeEEEEccC
Q 000998 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI--VCTIHQPSIDIFESFDELLFMKRG 1045 (1194)
Q Consensus 968 ~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tv--i~~~H~~~~~~~~~~d~~~~l~~g 1045 (1194)
+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|| |++||+++ ++...||++++|+ +
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~-~ 238 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK-D 238 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEE-T
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 799999999999999999999999999999999999999999999997669999 99999986 4567899999998 5
Q ss_pred cEEEEeCCCC
Q 000998 1046 GELIYAGPLG 1055 (1194)
Q Consensus 1046 G~~~~~g~~~ 1055 (1194)
|++++.|+..
T Consensus 239 G~i~~~g~~~ 248 (279)
T 2ihy_A 239 GQSIQQGAVE 248 (279)
T ss_dssp TEEEEEEEHH
T ss_pred CEEEEECCHH
Confidence 7999988753
No 43
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-39 Score=362.75 Aligned_cols=200 Identities=25% Similarity=0.387 Sum_probs=171.0
Q ss_pred eEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCC-CCCCCCcHH
Q 000998 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLTVL 920 (1194)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~-~~~~~lTv~ 920 (1194)
+.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++....+++.+|||+|++ ..++.+||+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 579999999999999999999999999999999999876 46899999998875434567799999995 456779999
Q ss_pred HHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCC--cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000998 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1194)
Q Consensus 921 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsg 998 (1194)
||+.|+.....+. .+..++++++++.+++. +..+..+ ..|||||||||+|||||+.+|+||+|||||+|
T Consensus 98 enl~~~~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 98 DEVAFAVKNFYPD----RDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHHHHTTTTTCTT----SCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 9999864322111 11234578899999998 7777654 58999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999777999999999987 45567999999984 789988864
No 44
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-39 Score=359.17 Aligned_cols=205 Identities=22% Similarity=0.252 Sum_probs=174.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCC----------CC------CCceE
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE----------FV------PPRTS 211 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~----------~~------~~~~~ 211 (1194)
.++|+|||++|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 46999999999999999999999999999999999999876 9999999988751 11 13569
Q ss_pred EEEecCCCCCCCCCHHHHHHHhh-hccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhC
Q 000998 212 AYVSQQDWQVAEMTVRETLDFAG-QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 290 (1194)
Q Consensus 212 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lg 290 (1194)
+||+|++.+++.+||+||+.|+. ...+... .+...+++++++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSK----------------------------------HDARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCH----------------------------------HHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcC
Confidence 99999999999999999999853 2221100 001234778999999
Q ss_pred Cccc-ccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh
Q 000998 291 LDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1194)
Q Consensus 291 L~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1194)
|.+. .+..++ .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++. + ++|+.++|+..
T Consensus 142 L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g-~tvi~vtHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-G-KTMVVVTHEMG 214 (262)
T ss_dssp CCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-T-CCEEEECSCHH
T ss_pred CCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-C-CEEEEEeCCHH
Confidence 9887 776654 59999999999999999999999999999999999999999999998764 4 45566889999
Q ss_pred HHHhhcCeEEEEcCCeEEEecChhhHH
Q 000998 370 EAYELFDDVILLSEGQIVYQGPRVSVL 396 (1194)
Q Consensus 370 ~~~~~~D~vilL~~G~iv~~G~~~~~~ 396 (1194)
++..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999988774
No 45
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3e-39 Score=371.98 Aligned_cols=206 Identities=28% Similarity=0.391 Sum_probs=178.8
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC-CceEEEEecCCCCCCCCCH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1194)
.++|+|||+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 36999999999999999999999999999999999999876 9999999998865443 4679999999999999999
Q ss_pred HHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 000998 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1194)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1194)
+||+.|+.+.++... .+...+++++++.+||.+..+..++ .
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~-----~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNRYPW-----Q 133 (362)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG-----G
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhCChh-----h
Confidence 999999765432110 0112347889999999988776654 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000998 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1194)
Q Consensus 307 LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1194)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG-ITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC-CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 4556688999999999999999999999
Q ss_pred EEecChhhHH
Q 000998 387 VYQGPRVSVL 396 (1194)
Q Consensus 387 v~~G~~~~~~ 396 (1194)
+..|+++++.
T Consensus 213 ~~~g~~~~~~ 222 (362)
T 2it1_A 213 LQVGTPDEVY 222 (362)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999998874
No 46
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-39 Score=355.71 Aligned_cols=196 Identities=23% Similarity=0.340 Sum_probs=169.2
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeeEeecCCCCCCCCcHHHH
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 922 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~ 922 (1194)
+|+|||+++++ |++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 49999999999 9999999999999999999999876 468999999987643 2245679999999999999999999
Q ss_pred HHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000998 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1194)
Q Consensus 923 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~ 1002 (1194)
+.|+...+ . ....++.++++++.+++.+..+..+ .+|||||||||+|||||+.+|++|+|||||+|||+.
T Consensus 91 l~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 91 IAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99864322 1 1122566889999999988777654 589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 1003 ~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
++..+++.|++++++ |+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999754 999999999975 46678999999984 799988874
No 47
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=3e-38 Score=397.25 Aligned_cols=195 Identities=26% Similarity=0.363 Sum_probs=145.3
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhhhc-C----CC-----CCC---eeEE------EEEEcCccCChh------
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA-G----RK-----TGG---IIEG------DIYISGYPKRQE------ 898 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g----~~-----~~~---~~~G------~i~i~g~~~~~~------ 898 (1194)
+|+|||++|++|+++||+|+||||||||+++|. | .. ..+ ...| .|.++|.++...
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 478999999999999999999999999999963 2 11 111 1223 366777664210
Q ss_pred c----------------ccceeeEeecCCCCC----------------------C-------------------------
Q 000998 899 T----------------FARISGYCEQNDIHS----------------------P------------------------- 915 (1194)
Q Consensus 899 ~----------------~~~~~gyv~Q~~~~~----------------------~------------------------- 915 (1194)
+ ..+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 0 123457777743211 1
Q ss_pred -------CCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000998 916 -------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1194)
Q Consensus 916 -------~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p 987 (1194)
.+|+.|++.|... ... ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------IAG---VHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------CHH---HHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------chH---HHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 3577777776321 111 123467899999876 34433 3589999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEc-----cCcEEEEeCCC
Q 000998 988 ---SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1194)
Q Consensus 988 ---~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~gG~~~~~g~~ 1054 (1194)
+||||||||+|||+.+...+++.|+++++.|.|||+++|+++ ....+|++++|. ++|++++.|++
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~ 955 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTP 955 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999965 457899999994 47899999975
No 48
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-39 Score=354.63 Aligned_cols=206 Identities=25% Similarity=0.296 Sum_probs=175.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC--CCceEEEEecCCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1194)
+++|+|||+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++||+|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 46999999999999999999999999999999999999876 999999998875421 1356999999999899999
Q ss_pred HHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 000998 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1194)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1194)
|+||+.|.....+... .+....++++++.+||.+..++.++
T Consensus 105 v~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~----- 145 (256)
T 1vpl_A 105 GIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS----- 145 (256)
T ss_dssp HHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----
T ss_pred HHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-----
Confidence 9999998654321100 0012247788999999988777654
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000998 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1194)
Q Consensus 306 ~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~ 385 (1194)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++. +++|+.++|...++..+||++++|++|+
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE--GLTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999998653 4556668899999999999999999999
Q ss_pred EEEecChhhHHH
Q 000998 386 IVYQGPRVSVLD 397 (1194)
Q Consensus 386 iv~~G~~~~~~~ 397 (1194)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999888754
No 49
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.6e-39 Score=369.82 Aligned_cols=201 Identities=24% Similarity=0.351 Sum_probs=176.3
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC-CceEEEEecCCCCCCCCCHHH
Q 000998 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRE 228 (1194)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 228 (1194)
+|+|||+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.+++++||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999886 9999999998765432 467999999999999999999
Q ss_pred HHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 000998 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1194)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1194)
|+.|+.+.++... ..+++++++.+||++..|..++ .||
T Consensus 92 nl~~~~~~~~~~~-------------------------------------~~~v~~~l~~~~L~~~~~~~~~-----~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TLS 129 (348)
T ss_dssp HHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GSC
T ss_pred HHHHHHHHcCCCH-------------------------------------HHHHHHHHHHcCCchHhcCChh-----hCC
Confidence 9999754322100 0247889999999988877654 699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 000998 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1194)
Q Consensus 309 GGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 388 (1194)
|||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g-~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK-LTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999876544 455668899999999999999999999999
Q ss_pred ecChhhHH
Q 000998 389 QGPRVSVL 396 (1194)
Q Consensus 389 ~G~~~~~~ 396 (1194)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
No 50
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.5e-39 Score=371.78 Aligned_cols=206 Identities=25% Similarity=0.354 Sum_probs=172.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC-CceEEEEecCCCCCCCCCH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1194)
.++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++++||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999876 9999999998865443 4679999999999999999
Q ss_pred HHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 000998 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1194)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1194)
+||+.|+.+.++... .+...+++++++.+||.+..+..++ .
T Consensus 101 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~-----~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYPA-----Q 141 (372)
T ss_dssp HHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCTT-----T
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh-----h
Confidence 999999754432110 0012347889999999988776654 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000998 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1194)
Q Consensus 307 LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1194)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 4556688999999999999999999999
Q ss_pred EEecChhhHH
Q 000998 387 VYQGPRVSVL 396 (1194)
Q Consensus 387 v~~G~~~~~~ 396 (1194)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999998874
No 51
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=5.1e-39 Score=356.50 Aligned_cols=216 Identities=24% Similarity=0.329 Sum_probs=174.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC----CceEEEEecCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1194)
.++|+|||+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 36999999999999999999999999999999999999876 9999999998765322 3469999999988999
Q ss_pred CCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 000998 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1194)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1194)
+||+||+.|+......+ .+.. . ....... ...+...+++++++.+||++..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~-~~~~---~----~~~~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 152 (257)
T 1g6h_A 97 MTVLENLLIGEICPGES-PLNS---L----FYKKWIP-------------KEEEMVEKAFKILEFLKLSHLYDRKAG--- 152 (257)
T ss_dssp SBHHHHHHGGGTSTTSC-HHHH---H----HHCSSCC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred CcHHHHHHHHHhhhccC-cccc---c----ccccccC-------------CHHHHHHHHHHHHHHcCCchhhCCCch---
Confidence 99999999864320000 0000 0 0000000 000112347889999999988777664
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000998 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1194)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1194)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++. +++|+.++|+.+++..+||+|++|++
T Consensus 153 --~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 153 --ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998753 45566688999999999999999999
Q ss_pred CeEEEecChhh
Q 000998 384 GQIVYQGPRVS 394 (1194)
Q Consensus 384 G~iv~~G~~~~ 394 (1194)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999999887
No 52
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.7e-39 Score=350.94 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=171.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC----CceEEEEecCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1194)
.++|+|||+.+++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999876 9999999998765432 2359999999999999
Q ss_pred CCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhC-CcccccccccCc
Q 000998 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-LDTCADTLVGDE 302 (1194)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 302 (1194)
+||+||+.|+.... ... .+....++.+++.++ |.+..+..+
T Consensus 96 ltv~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~~~l~~~~~~~~--- 137 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KDK----------------------------------EGIKRDLEWIFSLFPRLKERLKQLG--- 137 (240)
T ss_dssp SBHHHHHHGGGTTC-CCS----------------------------------SHHHHHHHHHHHHCHHHHTTTTSBS---
T ss_pred CcHHHHHHHhhhcC-CCH----------------------------------HHHHHHHHHHHHHcccHhhHhcCCh---
Confidence 99999999863211 000 001223667888884 877666654
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000998 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1194)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1194)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ . +++|+.++|+..++..+||+|++|+
T Consensus 138 --~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 138 --GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp --SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999875 3 4455667899999999999999999
Q ss_pred CCeEEEecChhhHH
Q 000998 383 EGQIVYQGPRVSVL 396 (1194)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1194)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999987764
No 53
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.6e-39 Score=371.90 Aligned_cols=206 Identities=27% Similarity=0.351 Sum_probs=178.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCC------CCC-CceEEEEecCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE------FVP-PRTSAYVSQQDWQ 220 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~------~~~-~~~~~yv~Q~d~~ 220 (1194)
.++|+|||+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++.. ..+ ++.++||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999876 9999999988754 222 4679999999999
Q ss_pred CCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 000998 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1194)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1194)
++++||+||+.|+.+.++... .+...+++++++.+||.+..+..++
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~ 138 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKPR 138 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCCcc
Confidence 999999999999765432110 0112357889999999988776654
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000998 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1194)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1194)
.|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++
T Consensus 139 -----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 139 -----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEE
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEE
Confidence 6999999999999999999999999999999999999999999999876544 4556688999999999999999
Q ss_pred EcCCeEEEecChhhHH
Q 000998 381 LSEGQIVYQGPRVSVL 396 (1194)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1194)
|++|+++..|+++++.
T Consensus 213 l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999998874
No 54
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.4e-38 Score=354.59 Aligned_cols=221 Identities=22% Similarity=0.289 Sum_probs=177.4
Q ss_pred eeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
.+.++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 36677776654 34679999999999999999999999999999999999742225789999999876
Q ss_pred Ch---hcc-cceeeEeecCCCCCCCCcHHHHHHHHhh-hc---CCCcCcHHHHHHHHHHHHHHcCCC-cccCCcccCCCC
Q 000998 896 RQ---ETF-ARISGYCEQNDIHSPGLTVLESLLFSAW-LR---LPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGI 966 (1194)
Q Consensus 896 ~~---~~~-~~~~gyv~Q~~~~~~~lTv~e~l~f~~~-lr---~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~ 966 (1194)
.. ... ++.+||++|++.+++.+||.|++.+... ++ ........+..+.++++++.+++. ...+..++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 32 122 3358999999999999999999987541 11 111123334456788999999996 45565431
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEccC
Q 000998 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRG 1045 (1194)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~g 1045 (1194)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+... ||++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 259999999999999999999999999999999999999999999998767999999999976 34344 899999984
Q ss_pred cEEEEeCCCC
Q 000998 1046 GELIYAGPLG 1055 (1194)
Q Consensus 1046 G~~~~~g~~~ 1055 (1194)
|++++.|+..
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 7999999863
No 55
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.5e-39 Score=370.55 Aligned_cols=204 Identities=22% Similarity=0.281 Sum_probs=176.9
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCC-----CC-CCceEEEEecCCCCCCC
Q 000998 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE-----FV-PPRTSAYVSQQDWQVAE 223 (1194)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 223 (1194)
+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++.. .. .++.++||+|++.++++
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999886 9999999988744 22 24679999999999999
Q ss_pred CCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 000998 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1194)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1194)
+||+||+.|+.+.++... .+...+++++++.+||++..+..++
T Consensus 97 ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~~~~~--- 139 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFPR--- 139 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG---
T ss_pred CCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh---
Confidence 999999999765432110 0012347889999999988876654
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000998 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1194)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1194)
.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++
T Consensus 140 --~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 140 --ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp --GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEET
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999876544 4556688999999999999999999
Q ss_pred CeEEEecChhhHH
Q 000998 384 GQIVYQGPRVSVL 396 (1194)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1194)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
No 56
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=9.1e-39 Score=360.49 Aligned_cols=208 Identities=23% Similarity=0.349 Sum_probs=166.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1194)
.++|+|||++|++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..... ++.++||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 46999999999999999999999999999999999999886 9999999999876543 467999999998775 6
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1194)
||+|||.|+..... .+.+.++.+. .+ ....++ .++...+|.+|+. .
T Consensus 143 Tv~eNi~~~~~~~~----~~~~~~~~~~---~~------------------------l~~~i~--~lp~gl~t~~~~~-g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----NDEVEAAAQA---AG------------------------IHDAIM--AFPEGYRTQVGER-G 188 (306)
T ss_dssp EHHHHHHTTSTTCC----HHHHHHHHHH---HT------------------------CHHHHH--HSTTGGGCEESTT-S
T ss_pred cHHHHHHhhcccCC----HHHHHHHHHH---hC------------------------cHHHHH--hccchhhhHhcCC-c
Confidence 99999998643211 0111110000 00 011111 2455678888854 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000998 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1194)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1194)
.+|||||||||+|||||+.+|+||+|||||||||+.+...|.+.|+++.+ ++| ++.++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~T-vi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRT-TIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSE-EEEECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCE-EEEEEcChHHHHc-CCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998754 344 5557888888766 9999999999
Q ss_pred eEEEecChhhHHH
Q 000998 385 QIVYQGPRVSVLD 397 (1194)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1194)
+|++.|+++++..
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 57
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.8e-38 Score=349.02 Aligned_cols=194 Identities=24% Similarity=0.350 Sum_probs=164.7
Q ss_pred ceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHH
Q 000998 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 920 (1194)
++.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|. .++.+|||+|++.+++.+||+
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~----------~~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE----------VYQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE----------ECSCEEEECSCCCCSSCCBHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE----------EeccEEEEcCCCccCCCCCHH
Confidence 4579999999999999999999999999999999999876 4689997 235689999999988899999
Q ss_pred HHHHHHhhhcCC-CcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000998 921 ESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1194)
Q Consensus 921 e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1194)
||+.|+...... .........+.++++++.+++.+..+..+ .+|||||||||+|||||+.+|+||+|||||+||
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~L 159 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSAL 159 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTS
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 999986532210 00011233456889999999988877654 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
|+.++..+++.|++++++ |+|||++||+++ .+...||++++|.+ |+ ++.|+.
T Consensus 160 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 999999999999999876 999999999975 46678999999985 67 888864
No 58
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.1e-38 Score=359.72 Aligned_cols=211 Identities=25% Similarity=0.332 Sum_probs=172.8
Q ss_pred ceeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000998 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1194)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1194)
..+.++|+++.++ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEE
Confidence 3578888887652 23579999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCccc-------CCcccCC
Q 000998 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLP 964 (1194)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 964 (1194)
+.. ..+++.+|||+|++.+++ .||+||+.|+... ... +.++++++.+++.+.. ++.++..
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 187 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGER 187 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTT
T ss_pred cccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCC
Confidence 753 345678999999998885 5999999986321 111 2355666666665432 3334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEcc
Q 000998 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1194)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 1044 (1194)
+.+|||||||||+|||||+.+|+||||||||||||+.+...|++.|+++. .++|||+++|+++ ....||+|++|+
T Consensus 188 -g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~aD~i~vl~- 262 (306)
T 3nh6_A 188 -GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLS--TVVNADQILVIK- 262 (306)
T ss_dssp -SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHH--HHHTCSEEEEEE-
T ss_pred -cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChH--HHHcCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999986 4799999999975 345699999998
Q ss_pred CcEEEEeCCC
Q 000998 1045 GGELIYAGPL 1054 (1194)
Q Consensus 1045 gG~~~~~g~~ 1054 (1194)
+|+++..|+.
T Consensus 263 ~G~iv~~G~~ 272 (306)
T 3nh6_A 263 DGCIVERGRH 272 (306)
T ss_dssp TTEEEEEECH
T ss_pred CCEEEEECCH
Confidence 5899999985
No 59
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-38 Score=348.13 Aligned_cols=201 Identities=22% Similarity=0.318 Sum_probs=172.3
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC-CCceEEEEecCCCCCCCCCHHH
Q 000998 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRE 228 (1194)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 228 (1194)
+|+|||+.+++ ++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999876 999999998875432 3467999999999999999999
Q ss_pred HHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 000998 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1194)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1194)
|+.|+....+. . . ...+++++++.+||.+..+..++ .||
T Consensus 90 nl~~~~~~~~~----~------~--------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----V------E--------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLS 128 (240)
T ss_dssp HHHTTCTTSCH----H------H--------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSC
T ss_pred HHHHHHHHcCC----c------h--------------------------HHHHHHHHHHHcCCHHHhcCChh-----hCC
Confidence 99986432210 0 0 01237788999999887776654 599
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 000998 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1194)
Q Consensus 309 GGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~ 388 (1194)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..+. +|+.++|+.+++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~-tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV-PILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC-CEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998654344 45557899999999999999999999999
Q ss_pred ecChhhHH
Q 000998 389 QGPRVSVL 396 (1194)
Q Consensus 389 ~G~~~~~~ 396 (1194)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99988774
No 60
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.4e-38 Score=350.13 Aligned_cols=194 Identities=23% Similarity=0.366 Sum_probs=168.6
Q ss_pred EEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeeEeecCCCCCCCCcH
Q 000998 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTV 919 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv 919 (1194)
.+|+|||+++++||++||+||||||||||+++|+|..+ +. |+|.++|.++.. ..+++.+||++|++.+++.+||
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 47999999999999999999999999999999999876 56 999999987632 3345679999999998899999
Q ss_pred HHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC-------EEEE
Q 000998 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS-------IVFM 992 (1194)
Q Consensus 920 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~-------illL 992 (1194)
+||+.|+.. +. .. .+.++++++.+++.+..+..+ ..|||||||||+|||||+.+|+ +|||
T Consensus 91 ~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 91 WHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp HHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 999987521 11 11 355789999999988877653 5899999999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++|+ +|++++.|+.
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~-~G~i~~~g~~ 217 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRR 217 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEEEH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999777999999999975 4567899999998 5789988875
No 61
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.3e-38 Score=355.37 Aligned_cols=218 Identities=23% Similarity=0.306 Sum_probs=169.9
Q ss_pred eeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
.+.++|+++.++. .+.+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPN----------HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTT----------CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 3667777665410 012569999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCC-CcCcHHHHHHHHHHHHHHc--CCCcccCCcccCCCCCCC
Q 000998 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELV--ELTSLSGALIGLPGINGL 969 (1194)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l--~l~~~~~~~~~~~~~~~L 969 (1194)
.. ..+++.+|||+|++.+++ .||+||+.|+...... ...........++++++.+ ++....+.. +..|
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~L 157 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET-----GNQL 157 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----GTTS
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----cCCC
Confidence 42 234567999999998887 5999999885321100 0000011122345667776 565555543 3589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEccCcEE
Q 000998 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGEL 1048 (1194)
Q Consensus 970 SgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~ 1048 (1194)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ .|+|||++||+++ ....||++++|++ |++
T Consensus 158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~-G~i 234 (271)
T 2ixe_A 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE-GSV 234 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999864 4999999999975 3456999999984 799
Q ss_pred EEeCCC
Q 000998 1049 IYAGPL 1054 (1194)
Q Consensus 1049 ~~~g~~ 1054 (1194)
+..|+.
T Consensus 235 ~~~g~~ 240 (271)
T 2ixe_A 235 CEQGTH 240 (271)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 988875
No 62
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.5e-38 Score=348.45 Aligned_cols=211 Identities=27% Similarity=0.433 Sum_probs=171.3
Q ss_pred eeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
.+.++|+++.++ .+++.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~ 73 (247)
T 2ff7_A 7 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred ceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEh
Confidence 456666665441 024579999999999999999999999999999999999876 4689999999886
Q ss_pred Ch---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcc-------cCCC
Q 000998 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI-------GLPG 965 (1194)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~-------~~~~ 965 (1194)
.. ..+++.+|||+|++.+++ .||+||+.|+. + ... .+.++++++.+++.+..+... +. .
T Consensus 74 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~ 142 (247)
T 2ff7_A 74 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-Q 142 (247)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-T
T ss_pred hhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-C
Confidence 43 234567999999998876 59999998752 1 111 234667788888876554331 22 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccC
Q 000998 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1194)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 1045 (1194)
+..|||||||||+|||||+.+|+||+|||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++
T Consensus 143 ~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~- 218 (247)
T 2ff7_A 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK- 218 (247)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-
Confidence 46899999999999999999999999999999999999999999999985 69999999999863 3 56999999984
Q ss_pred cEEEEeCCC
Q 000998 1046 GELIYAGPL 1054 (1194)
Q Consensus 1046 G~~~~~g~~ 1054 (1194)
|++++.|+.
T Consensus 219 G~i~~~g~~ 227 (247)
T 2ff7_A 219 GKIVEQGKH 227 (247)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 799988874
No 63
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.7e-39 Score=344.20 Aligned_cols=186 Identities=20% Similarity=0.296 Sum_probs=160.1
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcH
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 919 (1194)
++ .+|+|||+++++||++||+|||||||||||++|+|..+ +.+|+|.++|.++. ..++.+|||+|++.+++.+||
T Consensus 21 ~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv 95 (214)
T 1sgw_A 21 DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISV 95 (214)
T ss_dssp SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBH
T ss_pred CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCH
Confidence 44 79999999999999999999999999999999999876 46899999998765 356779999999999999999
Q ss_pred HHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000998 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1194)
Q Consensus 920 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1194)
+||+.|....+.. ... .+.++++++.+++.+. +.. +..|||||||||+||+||+.+|++|+|||||+||
T Consensus 96 ~enl~~~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkqrv~laraL~~~p~lllLDEPts~L 164 (214)
T 1sgw_A 96 EDYLKAVASLYGV-KVN----KNEIMDALESVEVLDL-KKK-----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 164 (214)
T ss_dssp HHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTS
T ss_pred HHHHHHHHHhcCC-chH----HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCC
Confidence 9999987544321 111 3457889999999877 554 3589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 000998 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1194)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 1042 (1194)
|+.++..+++.|++++++|+|||++||+++ .+...+|+++++
T Consensus 165 D~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~ 206 (214)
T 1sgw_A 165 DEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY 206 (214)
T ss_dssp CTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 999999999999999767999999999987 455667777655
No 64
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=7.7e-38 Score=348.60 Aligned_cols=205 Identities=26% Similarity=0.384 Sum_probs=173.2
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCC-CCCCCCCH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD-WQVAEMTV 226 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 226 (1194)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999876 999999998765322246799999995 56778999
Q ss_pred HHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCc--ccccccccCccC
Q 000998 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD--TCADTLVGDEML 304 (1194)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 304 (1194)
+||+.|+.... ... .+...+++.+++.+||. +..+..++
T Consensus 97 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~~---- 137 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVPF---- 137 (266)
T ss_dssp HHHHHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCGG----
T ss_pred HHHHHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCChh----
Confidence 99999864321 000 01123477889999998 77776654
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000998 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1194)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1194)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+. +++|+.++|+..++..+||+|++|++|
T Consensus 138 -~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 138 -FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp -GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999998754 445666788888899999999999999
Q ss_pred eEEEecChhhHHH
Q 000998 385 QIVYQGPRVSVLD 397 (1194)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1194)
++++.|+.+++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999888754
No 65
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.4e-37 Score=347.83 Aligned_cols=209 Identities=24% Similarity=0.298 Sum_probs=169.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCC--CCC---CCceEEEEecCCCCC-
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFV---PPRTSAYVSQQDWQV- 221 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~--~~~---~~~~~~yv~Q~d~~~- 221 (1194)
+++|+|||+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 46999999999999999999999999999999999999886 999999998875 322 135699999997533
Q ss_pred -CCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 000998 222 -AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1194)
Q Consensus 222 -~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1194)
+.+||+||+.|+..... . .+. .+. .+...+++++++.+||.+..+..++
T Consensus 111 ~~~ltv~enl~~~~~~~~-~-~~~--------------~~~--------------~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI-G-VYQ--------------DID--------------DEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------CC--------------HHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc-c-ccc--------------CCc--------------HHHHHHHHHHHHHcCChhHhcCChh
Confidence 35699999988532100 0 000 000 0012347788999999988777665
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEE-EEEecChhHHHhhcCeEE
Q 000998 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV-ISLLQPAPEAYELFDDVI 379 (1194)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~i-i~~~q~~~~~~~~~D~vi 379 (1194)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++. +.|+. +.++|+.+++..+||+|+
T Consensus 161 -----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 161 -----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEE
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEE
Confidence 59999999999999999999999999999999999999999999998764 55540 557888899999999999
Q ss_pred EEcCCeEEEecChhhH
Q 000998 380 LLSEGQIVYQGPRVSV 395 (1194)
Q Consensus 380 lL~~G~iv~~G~~~~~ 395 (1194)
+|++|++++.|+++++
T Consensus 235 ~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 235 LLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEETTEEEEEEEHHHH
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999998776
No 66
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.6e-37 Score=340.30 Aligned_cols=200 Identities=26% Similarity=0.394 Sum_probs=161.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1194)
.++|+|||++|++||+++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999876 9999999998765432 356999999998776 6
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCccc-------ccc
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC-------ADT 297 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~-------~dt 297 (1194)
||+||+.|+.. ... ...++.+++.+||.+. .++
T Consensus 98 tv~enl~~~~~----~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP----GMS------------------------------------VEKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT----TCC------------------------------------HHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC----CCC------------------------------------HHHHHHHHHHhChHHHHHhCcchhhh
Confidence 99999987521 000 0113344555555433 234
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000998 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1194)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1194)
.++. ....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. . + ++|+.++|....+. .||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g-~tviivtH~~~~~~-~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-G-RTVIIIAHRLSTVK-NADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-T-SEEEEECSSGGGGT-TSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-C-CEEEEEeCCHHHHH-hCCE
Confidence 4443 356799999999999999999999999999999999999999999999984 2 4 45555777777664 5999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 000998 378 VILLSEGQIVYQGPRVSVL 396 (1194)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1194)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988774
No 67
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-38 Score=347.15 Aligned_cols=199 Identities=25% Similarity=0.388 Sum_probs=165.6
Q ss_pred ceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeeEeecCCCCCCCC
Q 000998 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~l 917 (1194)
++.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+|||+|++.+++ .
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 3568999999999999999999999999999999999876 458999999987643 235667999999998877 5
Q ss_pred cHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCccc------CCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000998 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG------LPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1194)
Q Consensus 918 Tv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~------~~~~~~LSgGqrqrl~ia~aL~~~p~ill 991 (1194)
||+||+.|+.. + ... .+.++++++.+++.+..+.... ...+..|||||||||+|||||+.+|++|+
T Consensus 91 tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lll 162 (243)
T 1mv5_A 91 TIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM 162 (243)
T ss_dssp EHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999987521 1 111 2346788889998877654320 11246899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
|||||+|||+.++..+++.|+++. +|+|||++||+++ ..+.||++++|++ |+++..|+.
T Consensus 163 LDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~ 221 (243)
T 1mv5_A 163 LDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGKH 221 (243)
T ss_dssp EECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-TEECCCSCH
T ss_pred EECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999987 6999999999975 3456999999984 799888875
No 68
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.1e-37 Score=345.55 Aligned_cols=209 Identities=22% Similarity=0.348 Sum_probs=165.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1194)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999999876 9999999988754322 356999999998776 5
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHh--CCcccccccccCc
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL--GLDTCADTLVGDE 302 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 302 (1194)
||+|||.|+.... .. .+...+.. . ...++.+++.+ ||....+..
T Consensus 108 tv~enl~~~~~~~--~~-~~~~~~~~---~------------------------~~~~~~~l~~l~~gl~~~~~~~---- 153 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-MEEITAVA---M------------------------ESGAHDFISGFPQGYDTEVGET---- 153 (271)
T ss_dssp BHHHHHHTTCSSC--CC-HHHHHHHH---H------------------------HHTCHHHHHHSTTGGGSBCCGG----
T ss_pred cHHHHHhhhcccC--Ch-HHHHHHHH---H------------------------HHhHHHHHHhhhcchhhhhcCC----
Confidence 9999999864211 00 00000000 0 11245567777 676555443
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000998 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1194)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1194)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+.. +++|+.++|....+. .||+|++|+
T Consensus 154 -~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 154 -GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp -GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 45699999999999999999999999999999999999999999999875433 445666788887775 599999999
Q ss_pred CCeEEEecChhhHHH
Q 000998 383 EGQIVYQGPRVSVLD 397 (1194)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1194)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
No 69
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.8e-37 Score=341.04 Aligned_cols=206 Identities=23% Similarity=0.276 Sum_probs=163.2
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcC--cCCCCceeeEEEECCccCCCCCC----CceEEEEecCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR--LGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQV 221 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 221 (1194)
.++|+|||++|++|++++|+|||||||||||++|+|. ++| .+|+|.++|.++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4699999999999999999999999999999999998 444 49999999998765432 23489999999999
Q ss_pred CCCCHHHHHHHhhhc-cCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCC-cccccccc
Q 000998 222 AEMTVRETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLV 299 (1194)
Q Consensus 222 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 299 (1194)
+.+||+||+.|+... .+... .. .+....++.+++.+|| .+..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~-------------------~~-------------~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREV-------------------GV-------------AEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCC-------------------CH-------------HHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccC-------------------CH-------------HHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999885421 11000 00 0012347788999999 47777655
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh-cCeE
Q 000998 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-FDDV 378 (1194)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~v 378 (1194)
++ +|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+ +|+|
T Consensus 141 ~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~~d~v 214 (250)
T 2d2e_A 141 NE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-P-NFGALVITHYQRILNYIQPDKV 214 (250)
T ss_dssp TC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-T-TCEEEEECSSSGGGGTSCCSEE
T ss_pred cc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCCEE
Confidence 42 3999999999999999999999999999999999999999999998854 2 45566678888888888 5999
Q ss_pred EEEcCCeEEEecChhh
Q 000998 379 ILLSEGQIVYQGPRVS 394 (1194)
Q Consensus 379 ilL~~G~iv~~G~~~~ 394 (1194)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
No 70
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.5e-37 Score=339.74 Aligned_cols=210 Identities=25% Similarity=0.392 Sum_probs=167.2
Q ss_pred eEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000998 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1194)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 896 (1194)
+.++|+++.++. ...+.+|+|||+++++||++||+||||||||||+++|+|..+ + +|+|.++|.++.
T Consensus 18 l~i~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 18 IEFSDVNFSYPK----------QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVN 84 (260)
T ss_dssp EEEEEEEECCTT----------CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGG
T ss_pred EEEEEEEEEeCC----------CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhh
Confidence 566777665420 011468999999999999999999999999999999999875 4 799999998764
Q ss_pred h---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCccc-------CCcccCCCC
Q 000998 897 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPGI 966 (1194)
Q Consensus 897 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~~~ 966 (1194)
. ..+++.+|||+|++.+++ .||+||+.|+.. ... .+.+.++++.+++.+.. ++.++. .+
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~ 153 (260)
T 2ghi_A 85 KYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGN-KG 153 (260)
T ss_dssp GBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESS-SS
T ss_pred hcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccC-Cc
Confidence 2 334667999999998876 599999987421 111 12355677777765432 222222 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCc
Q 000998 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1194)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1194)
..|||||||||+|||||+.+|+||+|||||+|||+.++..+++.|+++.+ |+|||++||+++. + +.||++++|+ +|
T Consensus 154 ~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~-~G 229 (260)
T 2ghi_A 154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLN-KG 229 (260)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEE-TT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEE-CC
Confidence 68999999999999999999999999999999999999999999999864 8999999999863 3 5699999998 47
Q ss_pred EEEEeCCC
Q 000998 1047 ELIYAGPL 1054 (1194)
Q Consensus 1047 ~~~~~g~~ 1054 (1194)
+++..|+.
T Consensus 230 ~i~~~g~~ 237 (260)
T 2ghi_A 230 KIVEKGTH 237 (260)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99988875
No 71
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=8e-37 Score=336.06 Aligned_cols=197 Identities=24% Similarity=0.351 Sum_probs=169.3
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCCCCCCCC
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1194)
++|+|+|+.+++|++++|+|||||||||||++|+|.++| . |+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999865 4 999999988754322 356999999998899999
Q ss_pred HHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 000998 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1194)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1194)
|+||+.|+.. .. . . ...++.+++.+||.+..+..++
T Consensus 90 v~e~l~~~~~-~~--~--~----------------------------------~~~~~~~l~~~~l~~~~~~~~~----- 125 (249)
T 2qi9_C 90 VWHYLTLHQH-DK--T--R----------------------------------TELLNDVAGALALDDKLGRSTN----- 125 (249)
T ss_dssp HHHHHHTTCS-ST--T--C----------------------------------HHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred HHHHHHHhhc-cC--C--c----------------------------------HHHHHHHHHHcCChhHhcCChh-----
Confidence 9999987521 00 0 0 1236778999999887776554
Q ss_pred CCChhhhhHHHHHHHHhCCCc-------EeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000998 306 GISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1194)
Q Consensus 306 ~LSGGqkqRvsia~al~~~~~-------vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1194)
.|||||||||+||+||+.+|+ +|+|||||+|||+.++..+++.|+++++. +++|+.++|+..++..++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999 99999999999999999999999998754 445666889999999999999
Q ss_pred EEEcCCeEEEecChhhH
Q 000998 379 ILLSEGQIVYQGPRVSV 395 (1194)
Q Consensus 379 ilL~~G~iv~~G~~~~~ 395 (1194)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998776
No 72
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-37 Score=337.36 Aligned_cols=202 Identities=23% Similarity=0.314 Sum_probs=165.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC---CCceEEEEecCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1194)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 46999999999999999999999999999999999999876 999999999875432 3467999999998776 5
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccc-------
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT------- 297 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt------- 297 (1194)
||+||+.|+... ... ...++.+++.+||.+..+.
T Consensus 91 tv~enl~~~~~~---~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG---DYT------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS---CSC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC---CCC------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999875211 000 1124566777787665443
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000998 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1194)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1194)
.++ +....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. . + ++|+.++|....+ ..+|+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~-~tvi~vtH~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-G-RTTLVIAHRLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-T-SEEEEECCSHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-C-CEEEEEeCChHHH-HhCCE
Confidence 333 3456899999999999999999999999999999999999999999999885 2 4 4555577777766 46999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 000998 378 VILLSEGQIVYQGPRVSVLD 397 (1194)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~ 397 (1194)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999887753
No 73
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.6e-37 Score=339.18 Aligned_cols=190 Identities=21% Similarity=0.271 Sum_probs=162.5
Q ss_pred eEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceee-EeecCCCCCCCCcHH
Q 000998 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISG-YCEQNDIHSPGLTVL 920 (1194)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~Q~~~~~~~lTv~ 920 (1194)
+.+|+|||++++ ||++||+||||||||||+++|+|.. + .+|+|.++|.++.....++.+| |++|++.+ .+||+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 579999999999 9999999999999999999999987 4 5899999998754211256789 99999877 89999
Q ss_pred HHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCC-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000998 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1194)
Q Consensus 921 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1194)
||+.+...+. ... .+.++++++.+++. +..+..+ .+|||||||||+|||||+.+|++|+|||||+||
T Consensus 92 enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 92 DIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 9999875433 111 24578899999998 7776653 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC-eEEEEccCcEEEEeCCC
Q 000998 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFD-ELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d-~~~~l~~gG~~~~~g~~ 1054 (1194)
|+.++..+++.|+++.+ |||++||+++ .+...|| ++++|. +|++++.|+.
T Consensus 160 D~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~-~G~i~~~g~~ 210 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLV-GNRLQGPISV 210 (263)
T ss_dssp CHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEE-TTEEEEEEEH
T ss_pred CHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEE-CCEEEEecCH
Confidence 99999999999998743 9999999986 4557899 999998 5799998874
No 74
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.9e-36 Score=332.90 Aligned_cols=197 Identities=18% Similarity=0.234 Sum_probs=165.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1194)
.++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 36999999999999999999999999999999999999886 999982 34699999999888899999
Q ss_pred HHHHHhhhcc-CCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 000998 228 ETLDFAGQCQ-GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1194)
Q Consensus 228 E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1194)
||+.|+.... +.... +. .....+++.+++.+||.+..+..++ .
T Consensus 85 enl~~~~~~~~~~~~~-----------------~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAK-----------------PK--------------SHDYQVAMQALDYLNLTHLAKREFT-----S 128 (253)
T ss_dssp HHHHGGGGGGSCTTCC-----------------CC--------------HHHHHHHHHHHHHTTCGGGTTSBGG-----G
T ss_pred HHHHHhhhhhcccccC-----------------CC--------------HHHHHHHHHHHHHcCChHHhcCChh-----h
Confidence 9999864321 10000 00 0012347788999999988776654 6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000998 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1194)
Q Consensus 307 LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1194)
|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+.. +++|+.++|+.+++..+||+|++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ-NMTVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 99999999999999999999999999999999999999999999987543 4556668899999999999999999999
Q ss_pred EEecChhhH
Q 000998 387 VYQGPRVSV 395 (1194)
Q Consensus 387 v~~G~~~~~ 395 (1194)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998776
No 75
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.8e-36 Score=336.26 Aligned_cols=200 Identities=23% Similarity=0.321 Sum_probs=161.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC---CCceEEEEecCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1194)
+++|+|||+.|++|++++|+|||||||||||++|+|.+++ +|+|.++|.++.... .++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999999853 799999998875432 2357999999998775 6
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHh-------CCcccccc
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-------GLDTCADT 297 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 297 (1194)
||+||+.|+.. ....+ .+..+++.+ ++++..||
T Consensus 108 tv~enl~~~~~----~~~~~------------------------------------~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL----DATDE------------------------------------EVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT----TCCHH------------------------------------HHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC----CCCHH------------------------------------HHHHHHHHhCCHHHHHhccccccc
Confidence 99999988521 00000 112223333 35556677
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000998 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1194)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1194)
.++. ....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ + ++|+.++|....+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~-~tviivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--N-RTLIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--T-SEEEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--C-CEEEEEcCCHHHH-HhCCE
Confidence 7764 4568999999999999999999999999999999999999999999998853 4 4555577777766 46999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 000998 378 VILLSEGQIVYQGPRVSVLD 397 (1194)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~ 397 (1194)
|++|++|+++..|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 76
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.8e-36 Score=335.99 Aligned_cols=223 Identities=22% Similarity=0.241 Sum_probs=172.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC----CceEEEEecCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1194)
+++|+|||++|++|++++|+|||||||||||++|+|.+.. .+.+|+|.++|.++..... ++.++||+|++.+++.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~ 111 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence 4699999999999999999999999999999999998421 1349999999988754332 2348999999999999
Q ss_pred CCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccccCc
Q 000998 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDE 302 (1194)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~ 302 (1194)
+||.|++.+...... ...+..... ..+...+++++++.+||+ +..+..++
T Consensus 112 ~tv~e~~~~~~~~~~---------------~~~~~~~~~------------~~~~~~~~~~~l~~~gl~~~~~~~~~~-- 162 (267)
T 2zu0_C 112 VSNQFFLQTALNAVR---------------SYRGQETLD------------RFDFQDLMEEKIALLKMPEDLLTRSVN-- 162 (267)
T ss_dssp CBHHHHHHHHHHHHH---------------HGGGCCCCC------------HHHHHHHHHHHHHHTTCCTTTTTSBTT--
T ss_pred ccHHHHHHHHHHhhh---------------hhhccccCC------------HHHHHHHHHHHHHHcCCChhHhcCCcc--
Confidence 999999987431000 000000000 001123478899999996 45565543
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh-cCeEEEE
Q 000998 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-FDDVILL 381 (1194)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~vilL 381 (1194)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ . +++|+.++|+..++..+ +|+|++|
T Consensus 163 --~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 163 --VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-G-KRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp --TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-S-SCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred --cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 14999999999999999999999999999999999999999999998753 2 45566688888888776 8999999
Q ss_pred cCCeEEEecChhhHHHHHHhcCCC
Q 000998 382 SEGQIVYQGPRVSVLDFFASMGFS 405 (1194)
Q Consensus 382 ~~G~iv~~G~~~~~~~~F~~~G~~ 405 (1194)
++|++++.|+++++.. ++..||.
T Consensus 239 ~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 239 YQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp ETTEEEEEECTTHHHH-HHTTTCT
T ss_pred ECCEEEEEcCHHHHhh-hhhcchh
Confidence 9999999999988753 3444443
No 77
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4e-36 Score=332.95 Aligned_cols=194 Identities=20% Similarity=0.197 Sum_probs=166.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEE-EEecCCCCCCCCCH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA-YVSQQDWQVAEMTV 226 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 226 (1194)
+++|+|+|+.++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 86 999999998764321256799 99999876 8999
Q ss_pred HHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccccCccCC
Q 000998 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLK 305 (1194)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 305 (1194)
+||+.|+..... ....+++.+++.+||. +..+..++
T Consensus 91 ~enl~~~~~~~~--------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~~----- 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--------------------------------------LDRDLFLEMLKALKLGEEILRRKLY----- 127 (263)
T ss_dssp HHHHHHHHHHTC--------------------------------------CCHHHHHHHHHHTTCCGGGGGSBGG-----
T ss_pred HHHHHHhhhhcc--------------------------------------hHHHHHHHHHHHcCCChhHhcCChh-----
Confidence 999988543210 0012367889999998 77776554
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC-eEEEEcCC
Q 000998 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD-DVILLSEG 384 (1194)
Q Consensus 306 ~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D-~vilL~~G 384 (1194)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++. . +|+.++|+.+++..+|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998753 2 56668899899999999 99999999
Q ss_pred eEEEecChhhHH
Q 000998 385 QIVYQGPRVSVL 396 (1194)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1194)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999988875
No 78
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.3e-36 Score=326.41 Aligned_cols=186 Identities=24% Similarity=0.376 Sum_probs=149.9
Q ss_pred ceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHH
Q 000998 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 920 (1194)
++.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++| .+||++|++.+++. ||+
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 3569999999999999999999999999999999999876 4689999998 27999999988875 999
Q ss_pred HHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCC-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000998 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1194)
Q Consensus 921 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1194)
||+.|+.. .... ..+++++.+++.+..+. .++. .+..|||||||||+|||||+.+|++|+||
T Consensus 87 enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv~lAral~~~p~lllLD 155 (229)
T 2pze_A 87 ENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLD 155 (229)
T ss_dssp HHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99987531 1111 12344455555433222 2222 24689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 994 EPTSGLDARAAAIVMRT-VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 994 EPTsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
|||+|||+.++..+++. ++++. +|+|||++||+++ ....||++++|++ |++++.|+.
T Consensus 156 EPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~ 213 (229)
T 2pze_A 156 SPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTF 213 (229)
T ss_dssp STTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEET-TEEEEEECH
T ss_pred CcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999997 45554 4899999999975 3356999999985 789988874
No 79
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=351.92 Aligned_cols=200 Identities=24% Similarity=0.294 Sum_probs=163.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1194)
.++|+|||++|++||+++|+|||||||||||++|+|+++ .+|+|.++|.++....+ ++.++||+|++.+|+ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 469999999999999999999999999999999999874 38999999999876543 367999999998887 6
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC---
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD--- 301 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~--- 301 (1194)
||+||+.+... . ...+++.+++.+||.+..+.....
T Consensus 109 tv~enl~~~~~-----~------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAA-----H------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCC-----S------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhccc-----c------------------------------------CHHHHHHHHHHhCCHHHHhhccccccc
Confidence 99999964211 0 011255677788887655443321
Q ss_pred ---ccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000998 302 ---EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1194)
Q Consensus 302 ---~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1194)
+...+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+++++.++|+. +....+|+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~---~~~tvi~vtHd~-e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF---ADCTVILCEARI-EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT---TTSCEEEECSSS-GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcCH-HHHHhCCEE
Confidence 2234599999999999999999999999999999999999999999998753 234555677775 456779999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 000998 379 ILLSEGQIVYQGPRVSVLD 397 (1194)
Q Consensus 379 ilL~~G~iv~~G~~~~~~~ 397 (1194)
++|++|+|+..|+++++..
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998853
No 80
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.4e-35 Score=323.00 Aligned_cols=196 Identities=22% Similarity=0.312 Sum_probs=151.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1194)
.++|+|||++|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 46999999999999999999999999999999999999876 99999998 48999999988875 999
Q ss_pred HHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000998 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1194)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1194)
||+.|+.... . ....+. ++.. .++..++. ++...++.++. ....|
T Consensus 87 enl~~~~~~~----~-~~~~~~------------------~~~~---------~l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRSV------------------IKAC---------QLEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHHH------------------HHHT---------TCHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHHH------------------HHHh---------CcHHHHHh--CcccccccccC-CCCcC
Confidence 9998853210 0 000000 0000 01111221 22334555553 35689
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHH-HHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000998 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL-KHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1194)
Q Consensus 308 SGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1194)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.+ +.+. . +++|+.++|+..++. .||+|++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--A-NKTRILVTSKMEHLK-KADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--T-TSEEEEECCCHHHHH-HCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--C-CCEEEEEcCChHHHH-hCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999974 4442 2 345566778877764 5999999999999
Q ss_pred EEecChhhHH
Q 000998 387 VYQGPRVSVL 396 (1194)
Q Consensus 387 v~~G~~~~~~ 396 (1194)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999988774
No 81
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=5.2e-36 Score=328.04 Aligned_cols=186 Identities=25% Similarity=0.379 Sum_probs=149.0
Q ss_pred ceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHH
Q 000998 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 920 (1194)
++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|. +|||+|++.+ +.+||+
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~~-~~~tv~ 83 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGS----------VAYVPQQAWI-QNDSLR 83 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECSC----------EEEECSSCCC-CSEEHH
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE----------EEEEcCCCcC-CCcCHH
Confidence 3568999999999999999999999999999999999876 67999999982 8999999864 688999
Q ss_pred HHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCccc-------CCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000998 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1194)
Q Consensus 921 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1194)
||+.|+... . . . ..+++++.+++.+.. ++..+. .+..|||||||||+|||||+.+|+|||||
T Consensus 84 enl~~~~~~--~-~---~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLD 152 (237)
T 2cbz_A 84 ENILFGCQL--E-E---P----YYRSVIQACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFD 152 (237)
T ss_dssp HHHHTTSCC--C-T---T----HHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHhhCcccc--C-H---H----HHHHHHHHHhhHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999885321 1 1 1 122334444432211 111222 24689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 994 EPTSGLDARAAAIVMRTVR---NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~---~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
|||+|||+.++..+++.|+ ++. +|+|||++||+++. + ..||++++|++ |+++..|+.
T Consensus 153 EPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 212 (237)
T 2cbz_A 153 DPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-GKISEMGSY 212 (237)
T ss_dssp STTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-TEEEEEECH
T ss_pred CcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-CEEEEeCCH
Confidence 9999999999999999995 443 58999999999874 3 56999999985 799988875
No 82
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=353.41 Aligned_cols=210 Identities=21% Similarity=0.277 Sum_probs=173.0
Q ss_pred eeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
.+.++|+++.++ .++..+|+|||++|++||+++|+|||||||||||++|+|... .+|+|.++|.++
T Consensus 19 ~i~~~~l~~~y~-----------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 19 QMTVKDLTAKYT-----------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEEEEESS-----------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred eEEEEEEEEEec-----------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 466777766542 134579999999999999999999999999999999999864 589999999886
Q ss_pred Ch---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccC------CCC
Q 000998 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL------PGI 966 (1194)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~------~~~ 966 (1194)
.. ..+++.+|||+|++.+++ +||+||+.+.. ... ++.++++++.++|.++.+..... ...
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 43 335678999999999887 69999996421 111 24578899999998877765421 112
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCc
Q 000998 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1194)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1194)
..|||||||||+|||||+.+|+||||||||||||+..+..+++.|+++. .+.|||+++||++ ....+|++++|+ +|
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~-~G 229 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIE-EN 229 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEE-TT
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEE-CC
Confidence 3499999999999999999999999999999999999999999999864 5899999999975 446699999998 58
Q ss_pred EEEEeCCC
Q 000998 1047 ELIYAGPL 1054 (1194)
Q Consensus 1047 ~~~~~g~~ 1054 (1194)
+++..|++
T Consensus 230 ~i~~~g~~ 237 (390)
T 3gd7_A 230 KVRQYDSI 237 (390)
T ss_dssp EEEEESSH
T ss_pred EEEEECCH
Confidence 99999975
No 83
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8e-36 Score=368.70 Aligned_cols=208 Identities=25% Similarity=0.383 Sum_probs=166.8
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1194)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|+++.+... ++.++||+|++++++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 46999999999999999999999999999999999999886 9999999998876543 4679999999998875
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1194)
||+||+.|+... ...+.+.++++. .+ .+.. .-.+++..||.+|+. .
T Consensus 430 tv~eni~~~~~~----~~~~~~~~~~~~---~~------------------------~~~~--~~~lp~g~~t~~~~~-g 475 (578)
T 4a82_A 430 TVKENILLGRPT----ATDEEVVEAAKM---AN------------------------AHDF--IMNLPQGYDTEVGER-G 475 (578)
T ss_dssp BHHHHHGGGCSS----CCHHHHHHHHHH---TT------------------------CHHH--HHTSTTGGGCBCCGG-G
T ss_pred cHHHHHhcCCCC----CCHHHHHHHHHH---hC------------------------cHHH--HHhCcchhhhhhccC-C
Confidence 999999885311 111111111100 00 0011 224677889999864 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000998 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1194)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1194)
.+|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++.+ ++| ++.++|..+.+ ..||+|++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-~i~itH~l~~~-~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRT-TLIVAHRLSTI-THADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSSGGGT-TTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCE-EEEEecCHHHH-HcCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998743 445 45577877776 459999999999
Q ss_pred eEEEecChhhHHH
Q 000998 385 QIVYQGPRVSVLD 397 (1194)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1194)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 84
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=9.4e-36 Score=326.01 Aligned_cols=199 Identities=23% Similarity=0.351 Sum_probs=151.8
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1194)
.++|+|||++|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 46999999999999999999999999999999999998765 99999998 4899999986 5688999
Q ss_pred HHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCC-cccccccccCccCCC
Q 000998 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKG 306 (1194)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~vg~~~~~~ 306 (1194)
||+.|+.... ... ..+. .+ ...+++.+++ +...+|.++ +.+..
T Consensus 84 enl~~~~~~~--~~~---~~~~------------------~~------------~~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EPY---YRSV------------------IQ------------ACALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TTH---HHHH------------------HH------------HTTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HHH---HHHH------------------HH------------HHhhHHHHHhcccccccccc-CCCCC
Confidence 9998854211 000 0000 00 0001223333 223344454 34568
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000998 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1194)
Q Consensus 307 LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1194)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++......+++|+.++|....+ ..||+|++|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i 206 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKI 206 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999985211111244555577777765 57999999999999
Q ss_pred EEecChhhHHH
Q 000998 387 VYQGPRVSVLD 397 (1194)
Q Consensus 387 v~~G~~~~~~~ 397 (1194)
++.|+++++..
T Consensus 207 ~~~g~~~~~~~ 217 (237)
T 2cbz_A 207 SEMGSYQELLA 217 (237)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHhh
Confidence 99999988753
No 85
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-35 Score=367.16 Aligned_cols=208 Identities=26% Similarity=0.385 Sum_probs=166.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1194)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.+||.++.+... ++.++||+|++.+|+ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 46999999999999999999999999999999999999886 9999999999876543 467999999999886 4
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1194)
||+|||.|+... ...+.+.+.++ ..+ .... .-.|++..||.+|+. .
T Consensus 432 tv~eni~~~~~~----~~~~~~~~~~~---~~~------------------------~~~~--i~~l~~g~~~~~~~~-~ 477 (587)
T 3qf4_A 432 TIKENLKWGRED----ATDDEIVEAAK---IAQ------------------------IHDF--IISLPEGYDSRVERG-G 477 (587)
T ss_dssp EHHHHHTTTCSS----CCHHHHHHHHH---HTT------------------------CHHH--HHTSSSGGGCEECSS-S
T ss_pred cHHHHHhccCCC----CCHHHHHHHHH---HhC------------------------cHHH--HHhcccchhhHhcCC-C
Confidence 999999875321 11111111110 000 0111 124677788999864 5
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000998 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1194)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1194)
.+|||||||||+|||||+.+|++|+||||||+||+.++..+.+.++++.+ + ++++.++|..+.+ ..+|+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~-~tvi~itH~l~~~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK--G-CTTFIITQKIPTA-LLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST--T-CEEEEEESCHHHH-TTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC--C-CEEEEEecChHHH-HhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998642 4 4555577777765 589999999999
Q ss_pred eEEEecChhhHHH
Q 000998 385 QIVYQGPRVSVLD 397 (1194)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1194)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 86
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-36 Score=321.36 Aligned_cols=188 Identities=16% Similarity=0.225 Sum_probs=156.1
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHH
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1194)
++|+|||+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999876 999999998775 23567999999999899999999
Q ss_pred HHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 000998 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1194)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1194)
|+.|+....+. . .+ ...++.+++.+||++. +..+ ..||
T Consensus 98 nl~~~~~~~~~-~----------------------------------~~-~~~~~~~l~~~gl~~~-~~~~-----~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K----------------------------------VN-KNEIMDALESVEVLDL-KKKL-----GELS 135 (214)
T ss_dssp HHHHHHHHTTC-C----------------------------------CC-HHHHHHHHHHTTCCCT-TSBG-----GGSC
T ss_pred HHHHHHHhcCC-c----------------------------------hH-HHHHHHHHHHcCCCcC-CCCh-----hhCC
Confidence 99886432210 0 00 2246778999999876 5544 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000998 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1194)
Q Consensus 309 GGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1194)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+. + ++|+.++|...++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g-~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-K-GIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-H-SEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-C-CEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999999998653 3 45555778888888888887754 4444
No 87
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=6.6e-35 Score=362.00 Aligned_cols=215 Identities=25% Similarity=0.370 Sum_probs=176.1
Q ss_pred eEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000998 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1194)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 896 (1194)
+.++|+++.++. ..++.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++.
T Consensus 342 i~~~~v~~~y~~----------~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 342 LEFKNVHFAYPA----------RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEECSS----------CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEeCC----------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhh
Confidence 788888876621 012479999999999999999999999999999999999876 56899999998864
Q ss_pred h---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCccc-------CCcccCCCC
Q 000998 897 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPGI 966 (1194)
Q Consensus 897 ~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~~~ 966 (1194)
. ..+++.+|||+|++.+++ .||+||+.++...+ .... ++.++++++.+++.+.. ++.++.. +
T Consensus 410 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~-~ 481 (595)
T 2yl4_A 410 QLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEK-G 481 (595)
T ss_dssp TBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS-S
T ss_pred hCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCC-C
Confidence 3 345678999999999887 49999999863210 0112 24467888888876543 4444443 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCc
Q 000998 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1194)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1194)
.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ |+|||+++|+++ ..+.||++++|+ +|
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~-~G 557 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLD-QG 557 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEE-TT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEE-CC
Confidence 68999999999999999999999999999999999999999999999875 899999999975 346799999998 58
Q ss_pred EEEEeCCCC
Q 000998 1047 ELIYAGPLG 1055 (1194)
Q Consensus 1047 ~~~~~g~~~ 1055 (1194)
+++..|+..
T Consensus 558 ~i~~~g~~~ 566 (595)
T 2yl4_A 558 KITEYGKHE 566 (595)
T ss_dssp EEEEEECSC
T ss_pred EEEEECCHH
Confidence 999999864
No 88
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=5.6e-35 Score=362.66 Aligned_cols=203 Identities=24% Similarity=0.392 Sum_probs=166.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1194)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|.++.+... ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 46999999999999999999999999999999999999886 9999999999876543 457999999998886 5
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhC-------Ccccccc
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 297 (1194)
||+|||.|+..... +.. +..++++++.+| +++..||
T Consensus 433 tv~eni~~~~~~~~-~~~------------------------------------~~~~~~~~~~~~l~~~~~~l~~g~~~ 475 (595)
T 2yl4_A 433 SIAENIAYGADDPS-SVT------------------------------------AEEIQRVAEVANAVAFIRNFPQGFNT 475 (595)
T ss_dssp BHHHHHHTTSSSTT-TSC------------------------------------HHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CHHHHHhhcCCCcc-ccC------------------------------------HHHHHHHHHHcCCHHHHHhCcccccc
Confidence 99999998642100 000 011333444444 4567899
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000998 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1194)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1194)
.+|+. ..+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.+ ++| ++.++|....+ +.||+
T Consensus 476 ~~~~~-~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-vi~itH~~~~~-~~~d~ 550 (595)
T 2yl4_A 476 VVGEK-GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRT-VLVIAHRLSTI-KNANM 550 (595)
T ss_dssp BCSSS-SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSE-EEEECCCHHHH-HHSSE
T ss_pred cccCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCE-EEEEecCHHHH-HcCCE
Confidence 99864 457999999999999999999999999999999999999999999998864 444 55577777666 46999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 000998 378 VILLSEGQIVYQGPRVSVL 396 (1194)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1194)
|++|++|++++.|+++++.
T Consensus 551 i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 551 VAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp EEEEETTEEEEEECSCC--
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998875
No 89
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6e-35 Score=361.44 Aligned_cols=202 Identities=24% Similarity=0.370 Sum_probs=164.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC---CCceEEEEecCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1194)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+.. .++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 35999999999999999999999999999999999999886 999999999876543 2467999999998886 5
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhC-------Ccccccc
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 297 (1194)
||+||+.++.. .....+ .++++++.+| +++..||
T Consensus 432 tv~eni~~~~~---~~~~~~------------------------------------~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE---GEYTRE------------------------------------QIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC---CCCCHH------------------------------------HHHHHHHHCCCHHHHHhCcccccc
Confidence 99999988531 000000 1222333333 4456789
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000998 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1194)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1194)
.+|+. ..+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.+ ++| ++.++|....+ +.||+
T Consensus 473 ~~~~~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-vi~itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKT-VLVIAHRLSTI-EQADE 547 (582)
T ss_pred hhcCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCE-EEEEecCHHHH-HhCCE
Confidence 99864 567999999999999999999999999999999999999999999998753 445 45566776665 47999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 000998 378 VILLSEGQIVYQGPRVSVLD 397 (1194)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~ 397 (1194)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 90
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5.7e-35 Score=361.66 Aligned_cols=202 Identities=23% Similarity=0.371 Sum_probs=165.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1194)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 46999999999999999999999999999999999999886 9999999999876542 457999999998887 5
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhC-------Ccccccc
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 297 (1194)
||+||+.|+.. . ....+ .++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~~~~~------------------------------------~~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-E--EYSRE------------------------------------QIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-S--CCCHH------------------------------------HHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-C--CCCHH------------------------------------HHHHHHHHcCCHHHHHhccccccc
Confidence 99999998531 0 10001 1222233333 4557789
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000998 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1194)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1194)
.+|+. ..+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.++++.+ ++| ++.++|....+ +.||+
T Consensus 473 ~~~~~-~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-vi~itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRT-SLVIAHRLSTI-EQADE 547 (582)
T ss_dssp BCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSE-EEEECSCGGGT-TTCSE
T ss_pred cccCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCE-EEEEeccHHHH-HhCCE
Confidence 99864 568999999999999999999999999999999999999999999998853 445 45566776665 57999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 000998 378 VILLSEGQIVYQGPRVSVLD 397 (1194)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~ 397 (1194)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
No 91
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-35 Score=364.54 Aligned_cols=213 Identities=21% Similarity=0.293 Sum_probs=172.5
Q ss_pred ceeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000998 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1194)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1194)
..++++|+++.++ .+.+.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~-----------~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYF-----------ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSS-----------SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSB
T ss_pred CcEEEEEEEEEcC-----------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEE
Confidence 3578888887663 123569999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcc-------cCCcccCC
Q 000998 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLP 964 (1194)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~~~~ 964 (1194)
+.. ..+++.+|||+|++.+++. ||+||+.++.. .... +.++++++..++.+. .++.++..
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 643 3457789999999998865 99999987521 1122 223445555554332 23444433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEcc
Q 000998 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1194)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 1044 (1194)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|+++|+++ ....||++++|+
T Consensus 477 -~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~- 551 (587)
T 3qf4_A 477 -GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLH- 551 (587)
T ss_dssp -SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEE-
T ss_pred -CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEE-
Confidence 46899999999999999999999999999999999999999999999974 5999999999975 456899999998
Q ss_pred CcEEEEeCCCC
Q 000998 1045 GGELIYAGPLG 1055 (1194)
Q Consensus 1045 gG~~~~~g~~~ 1055 (1194)
+|+++..|+..
T Consensus 552 ~G~i~~~g~~~ 562 (587)
T 3qf4_A 552 EGKVAGFGTHK 562 (587)
T ss_dssp TTEEEEEECHH
T ss_pred CCEEEEECCHH
Confidence 58999999853
No 92
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.7e-35 Score=362.71 Aligned_cols=212 Identities=24% Similarity=0.394 Sum_probs=173.1
Q ss_pred ceeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000998 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1194)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1194)
..+.++|+++.++ .+++.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 338 ~~i~~~~v~~~y~-----------~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSC-----------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcC-----------CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 3578888877653 123569999999999999999999999999999999999877 568999999988
Q ss_pred CCh---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCccc-------CCcccCC
Q 000998 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLP 964 (1194)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~ 964 (1194)
+.. ..+++.+|||+|++.+++. ||+||+.++. + .... +.+.++++..++.+.. ++.++..
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 643 3456789999999998876 9999998752 1 1121 2355666666664432 3334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEcc
Q 000998 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1194)
Q Consensus 965 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 1044 (1194)
+.+||||||||++|||||+++|+||+|||||||||+.++..+.+.++++. +|+|+|+++|+++. .+.||++++|+
T Consensus 475 -g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~- 549 (578)
T 4a82_A 475 -GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE- 549 (578)
T ss_dssp -GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE-
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999885 58999999999873 46799999998
Q ss_pred CcEEEEeCCC
Q 000998 1045 GGELIYAGPL 1054 (1194)
Q Consensus 1045 gG~~~~~g~~ 1054 (1194)
+|+++..|+.
T Consensus 550 ~G~i~~~g~~ 559 (578)
T 4a82_A 550 NGHIVETGTH 559 (578)
T ss_dssp TTEEEEEECH
T ss_pred CCEEEEECCH
Confidence 5899999985
No 93
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-35 Score=365.57 Aligned_cols=208 Identities=23% Similarity=0.309 Sum_probs=165.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1194)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.+||.++.+... ++.++||+|++.+|+ .
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-T 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999886 9999999998876543 467999999998775 5
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1194)
||+||+.++... ...+.+.++ +...+ .+..+ -.+++..||.+|+. .
T Consensus 444 tv~eni~~~~~~----~~~~~~~~~---------------------~~~~~------~~~~~--~~~~~g~~t~~~~~-g 489 (598)
T 3qf4_B 444 TVKENLKYGNPG----ATDEEIKEA---------------------AKLTH------SDHFI--KHLPEGYETVLTDN-G 489 (598)
T ss_dssp BHHHHHHSSSTT----CCTTHHHHH---------------------TTTTT------CHHHH--HTSTTGGGCBCHHH-H
T ss_pred cHHHHHhcCCCC----CCHHHHHHH---------------------HHHhC------CHHHH--HhccccccchhcCC-C
Confidence 999999885321 111111110 00000 01111 24667788999864 4
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000998 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1194)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1194)
.+|||||||||+|||||+.+|++|+|||||||||+.+...+.+.++++.+ ++| ++.++|....+. .||+|++|++|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-~i~itH~l~~~~-~~d~i~~l~~G 565 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKT-SIIIAHRLNTIK-NADLIIVLRDG 565 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--TSE-EEEESCCTTHHH-HCSEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC--CCE-EEEEecCHHHHH-cCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998753 444 555777777664 49999999999
Q ss_pred eEEEecChhhHHH
Q 000998 385 QIVYQGPRVSVLD 397 (1194)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1194)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 94
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=9.1e-35 Score=359.84 Aligned_cols=212 Identities=25% Similarity=0.355 Sum_probs=174.1
Q ss_pred eeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
.+.++|+++.++. +++.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEc
Confidence 4777887765520 12568999999999999999999999999999999999876 4689999999886
Q ss_pred Ch---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCccc-------CCcccCCC
Q 000998 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1194)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~~~~~ 965 (1194)
.. ..+++.+|||+|++.+++. ||+||+.++.. + +.. ++.++++++.+++.+.. ++.++..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~- 477 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN- 477 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred cccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC-
Confidence 43 3456789999999998875 99999998531 1 122 23467788888776543 3344433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccC
Q 000998 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1194)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 1045 (1194)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++.+ |+|||+++|+++. .+.||++++|++
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~- 553 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED- 553 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC-
Confidence 468999999999999999999999999999999999999999999999864 9999999999863 467999999984
Q ss_pred cEEEEeCCC
Q 000998 1046 GELIYAGPL 1054 (1194)
Q Consensus 1046 G~~~~~g~~ 1054 (1194)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b60_A 554 GIIVERGTH 562 (582)
T ss_dssp TEEEEEECH
T ss_pred CEEEEecCH
Confidence 799998875
No 95
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.4e-35 Score=360.63 Aligned_cols=212 Identities=24% Similarity=0.346 Sum_probs=174.6
Q ss_pred eeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
.+.++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDV 407 (582)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEh
Confidence 4778888776521 12569999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCC-------cccCCC
Q 000998 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPG 965 (1194)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~ 965 (1194)
.. ..+++.+|||+|++.+++. ||+||+.++.. + +.. ++.++++++.+++.+..+. .++..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~- 477 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN- 477 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-
Confidence 42 3466789999999998875 99999988531 1 111 2346788888888655433 33333
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccC
Q 000998 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1194)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 1045 (1194)
+.+||||||||++|||||+++|+||+|||||||||+.++..+++.|+++. +|+|||+++|+++ ..+.||++++|+ +
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~--~~~~~d~i~~l~-~ 553 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLS--TIEQADEILVVD-E 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE-C
Confidence 46799999999999999999999999999999999999999999999986 4999999999975 346799999998 4
Q ss_pred cEEEEeCCC
Q 000998 1046 GELIYAGPL 1054 (1194)
Q Consensus 1046 G~~~~~g~~ 1054 (1194)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b5x_A 554 GEIIERGRH 562 (582)
T ss_pred CEEEEECCH
Confidence 799998875
No 96
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.6e-35 Score=361.65 Aligned_cols=210 Identities=25% Similarity=0.382 Sum_probs=169.7
Q ss_pred eeEeecceeeeecccccccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
.+.++|+++.++ +++.+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 354 ~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i 419 (598)
T 3qf4_B 354 EIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDI 419 (598)
T ss_dssp CEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEh
Confidence 577888877652 23468999999999999999999999999999999999877 5689999999886
Q ss_pred Ch---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCC-------cccCCC
Q 000998 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPG 965 (1194)
Q Consensus 896 ~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~ 965 (1194)
.. ..+++.+|||+|++.+++ .||+||+.++.. .... +.++++++..++.+..+. .++..
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~- 488 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDN- 488 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHH-
T ss_pred hhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCC-
Confidence 43 346778999999998886 599999987521 1111 224455555555433322 22221
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccC
Q 000998 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1194)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 1045 (1194)
+.+||||||||++|||||+++|+||+||||||+||+.+...+++.|+++. +|+|+|+++|+++. .+.||++++|+ +
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~-~ 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT--IKNADLIIVLR-D 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH--HHHCSEEEEEC-S
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE-C
Confidence 25799999999999999999999999999999999999999999999985 59999999999873 45699999998 4
Q ss_pred cEEEEeCCC
Q 000998 1046 GELIYAGPL 1054 (1194)
Q Consensus 1046 G~~~~~g~~ 1054 (1194)
|+++..|+.
T Consensus 565 G~i~~~g~~ 573 (598)
T 3qf4_B 565 GEIVEMGKH 573 (598)
T ss_dssp SSEEECSCH
T ss_pred CEEEEECCH
Confidence 799999985
No 97
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9.1e-35 Score=388.32 Aligned_cols=212 Identities=25% Similarity=0.371 Sum_probs=169.9
Q ss_pred cceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCCCCC
Q 000998 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVA 222 (1194)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 222 (1194)
.+.++|+|||++|+|||.++|+||+|||||||+++|.|.++|. +|+|.+||.++.+... ++.++||||++.+|.
T Consensus 1090 ~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~ 1166 (1321)
T 4f4c_A 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166 (1321)
T ss_dssp CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS
T ss_pred CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC
Confidence 4457999999999999999999999999999999999999886 9999999999988754 578999999998776
Q ss_pred CCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 000998 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1194)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1194)
.||||||.|+..-. ....+.+.++++. +. .... +-.|++..||.||++
T Consensus 1167 -gTIreNI~~gld~~--~~sd~ei~~Al~~------------------a~---------l~~~--I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1167 -CSIAENIIYGLDPS--SVTMAQVEEAARL------------------AN---------IHNF--IAELPEGFETRVGDR 1214 (1321)
T ss_dssp -EEHHHHHSSSSCTT--TSCHHHHHHHHHH------------------TT---------CHHH--HHTSTTTTCSEETTT
T ss_pred -ccHHHHHhccCCCC--CCCHHHHHHHHHH------------------hC---------ChHH--HHcCcCCCCCEecCC
Confidence 59999998863211 1111111111111 00 0011 235788999999975
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000998 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1194)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1194)
+ .+||||||||++|||||+.+|+||+||||||+||+.|...|.+.|++.. +++|++++.|... +...||+|+||+
T Consensus 1215 G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~---~~~TvI~IAHRLs-Ti~~aD~I~Vld 1289 (1321)
T 4f4c_A 1215 G-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR---EGRTCIVIAHRLN-TVMNADCIAVVS 1289 (1321)
T ss_dssp S-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS---SSSEEEEECSSSS-TTTTCSEEEEES
T ss_pred C-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc---CCCEEEEeccCHH-HHHhCCEEEEEE
Confidence 4 4799999999999999999999999999999999999999999998753 2344555666554 456799999999
Q ss_pred CCeEEEecChhhHHH
Q 000998 383 EGQIVYQGPRVSVLD 397 (1194)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1194)
+|+|+++|+++++++
T Consensus 1290 ~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSSEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999975
No 98
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6.2e-34 Score=319.61 Aligned_cols=184 Identities=23% Similarity=0.382 Sum_probs=147.5
Q ss_pred eEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHH
Q 000998 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1194)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 921 (1194)
+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++| .+||++|++.+++. ||+|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 358999999999999999999999999999999999876 6799999998 27999999988875 9999
Q ss_pred HHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCC-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000998 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1194)
Q Consensus 922 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1194)
|+. +. .. .. ..++++++.+++.+..+. .++. .+..||||||||++|||||+.+|++|+|||
T Consensus 118 nl~-~~--~~----~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 118 NII-GV--SY----DE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDS 185 (290)
T ss_dssp HHH-TT--CC----CH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred Hhh-Cc--cc----ch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 997 32 11 11 123345555555433221 1221 135899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 995 PTSGLDARAAAIVMRTV-RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 995 PTsgLD~~~~~~i~~~l-~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
||+|||+.++..+++.+ +++. +|+|||++||+++ ....||++++|+ +|++++.|+.
T Consensus 186 Pts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~-~G~i~~~g~~ 242 (290)
T 2bbs_A 186 PFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILH-EGSSYFYGTF 242 (290)
T ss_dssp TTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEE-TTEEEEEECH
T ss_pred CcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEE-CCeEEEeCCH
Confidence 99999999999999964 4553 5899999999975 345699999998 5789988875
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.7e-33 Score=316.04 Aligned_cols=194 Identities=22% Similarity=0.317 Sum_probs=147.3
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHH
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1194)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++|++|++.+++. ||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 5899999999999999999999999999999999998765 99999998 48999999988774 9999
Q ss_pred HHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 000998 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1194)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1194)
|+. +... .. ....+. ++.. .++..++. ++...++.++. ....||
T Consensus 118 nl~-~~~~----~~-~~~~~~------------------~~~~---------~l~~~l~~--~~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YRYRSV------------------IKAC---------QLEEDISK--FAEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HHHHHH------------------HHHT---------TCHHHHHT--STTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HHHHHH------------------HHHh---------ChHHHHHh--ccccccchhcC-ccCcCC
Confidence 997 3211 00 000000 0000 01112222 22334555553 356799
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHH-HHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 000998 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL-KHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1194)
Q Consensus 309 GGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv 387 (1194)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.+ +.+. .+++|+.++|+...+ ..||+|++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~---~~~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh---CCCEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4432 234566677887776 469999999999999
Q ss_pred EecChhhHH
Q 000998 388 YQGPRVSVL 396 (1194)
Q Consensus 388 ~~G~~~~~~ 396 (1194)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998874
No 100
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.98 E-value=3.6e-32 Score=362.50 Aligned_cols=211 Identities=22% Similarity=0.370 Sum_probs=168.4
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCCCCCC
Q 000998 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1194)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1194)
+.++|+|||++|+|||+++|+||||||||||+++|+|.++|. +|+|.++|+++..... ++.++||+|++.++ +
T Consensus 1045 ~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~ 1120 (1284)
T 3g5u_A 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-D 1120 (1284)
T ss_dssp GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-S
T ss_pred CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccc-c
Confidence 346999999999999999999999999999999999999886 9999999999876542 56799999999765 5
Q ss_pred CCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 000998 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1194)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1194)
.||+|||.++..... ...+.+.+.++. .+ ++.. .-.+++..||.||+.
T Consensus 1121 ~ti~eNi~~~~~~~~--~~~~~i~~~~~~---~~------------------------~~~~--i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1121 CSIAENIAYGDNSRV--VSYEEIVRAAKE---AN------------------------IHQF--IDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp SBHHHHHTCCCSSCC--CCHHHHHHHHHH---HT------------------------CHHH--HSSTTTGGGCBCSTT-
T ss_pred ccHHHHHhccCCCCC--CCHHHHHHHHHH---hC------------------------cHHH--HHhCccccccccCCC-
Confidence 799999988542211 111111111100 00 1111 224678899999964
Q ss_pred CCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000998 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1194)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1194)
...|||||||||+|||||+.+|+||+|||||+|||+.+...|.+.|++.. ++++++.++|..+.+ ..||+|++|++
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~---~~~tvi~isH~l~~i-~~~dri~vl~~ 1244 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR---EGRTCIVIAHRLSTI-QNADLIVVIQN 1244 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS---SSSCEEEECSCTTGG-GSCSEEEEEET
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC---CCCEEEEEecCHHHH-HcCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999998753 244555678888877 55999999999
Q ss_pred CeEEEecChhhHHH
Q 000998 384 GQIVYQGPRVSVLD 397 (1194)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1194)
|+++++|+++++.+
T Consensus 1245 G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1245 GKVKEHGTHQQLLA 1258 (1284)
T ss_dssp BEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=4.5e-30 Score=315.85 Aligned_cols=191 Identities=24% Similarity=0.279 Sum_probs=160.9
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHH
Q 000998 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1194)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1194)
.|+++|+.+++||+++|+|||||||||||++|+|.+.|. +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577788889999999999999999999999999999876 899875 2369999999877788999998
Q ss_pred HHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 000998 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1194)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 309 (1194)
+.+..... + . ....++.+++.+||.+..+..++ .|||
T Consensus 438 ~~~~~~~~-----~--------~-------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----L--------N-------------------------SNFYKTELLKPLGIIDLYDRNVE-----DLSG 474 (607)
T ss_dssp HHHHHHHH-----H--------H-------------------------CHHHHHHTHHHHTCTTTTTSBGG-----GCCH
T ss_pred HHhhhccC-----C--------C-------------------------HHHHHHHHHHHcCCchHhcCChh-----hCCH
Confidence 86521000 0 0 01236778999999887777665 5999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC--CeEE
Q 000998 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1194)
Q Consensus 310 GqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 387 (1194)
||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+ .+|+.++|+..++..++|+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 999999999999999999999999999999999999999999875434 4566688999999999999999986 8889
Q ss_pred EecChhhHHH
Q 000998 388 YQGPRVSVLD 397 (1194)
Q Consensus 388 ~~G~~~~~~~ 397 (1194)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=6.3e-30 Score=311.70 Aligned_cols=191 Identities=24% Similarity=0.276 Sum_probs=159.3
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHH
Q 000998 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1194)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1194)
.|+++|+.|++||+++|+|||||||||||++|+|.++|. +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 467777888999999999999999999999999999876 899875 2369999999877788999988
Q ss_pred HHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 000998 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1194)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 309 (1194)
+....... + .....++.+++.+||.+..+..++ .|||
T Consensus 368 ~~~~~~~~-----~---------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----L---------------------------------NSNFYKTELLKPLGIIDLYDREVN-----ELSG 404 (538)
T ss_dssp HHHHHHHH-----H---------------------------------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCH
T ss_pred HHhhhccC-----C---------------------------------CHHHHHHHHHHHcCChhhhcCChh-----hCCH
Confidence 75421000 0 001236678889999877776664 5999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC--CeEE
Q 000998 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1194)
Q Consensus 310 GqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 387 (1194)
||||||+||++|+.+|++|+|||||+|||..++..|.+.|+++++..+ .+|+.++|+.+++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 999999999999999999999999999999999999999999865434 4566688999999999999999986 8899
Q ss_pred EecChhhHHH
Q 000998 388 YQGPRVSVLD 397 (1194)
Q Consensus 388 ~~G~~~~~~~ 397 (1194)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.4e-29 Score=307.75 Aligned_cols=192 Identities=23% Similarity=0.258 Sum_probs=158.9
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHH
Q 000998 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1194)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1194)
.|+++|+.+++||+++|+||||||||||+++|+|.++|. +|+|.++|. .++|++|+......+||+||
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCe---------eeEeechhcccccCCCHHHH
Confidence 466778889999999999999999999999999999886 999987753 58999999776778999999
Q ss_pred HHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 000998 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1194)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 309 (1194)
+.+..... .. .....++.+++.+||.+..+..++ .|||
T Consensus 351 l~~~~~~~--~~-----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 388 (538)
T 3ozx_A 351 LENASKDA--LS-----------------------------------TSSWFFEEVTKRLNLHRLLESNVN-----DLSG 388 (538)
T ss_dssp HHHHCSST--TC-----------------------------------TTSHHHHHTTTTTTGGGCTTSBGG-----GCCH
T ss_pred HHHhhhhc--cc-----------------------------------hhHHHHHHHHHHcCCHHHhcCChh-----hCCH
Confidence 97632100 00 001235677888999887777665 5999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC--CeEE
Q 000998 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1194)
Q Consensus 310 GqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~--G~iv 387 (1194)
||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~-g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER-KAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 99999999999999999999999999999999999999999987644 45566689999999999999999986 6677
Q ss_pred EecChhhHH
Q 000998 388 YQGPRVSVL 396 (1194)
Q Consensus 388 ~~G~~~~~~ 396 (1194)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777766554
No 104
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4e-29 Score=306.70 Aligned_cols=193 Identities=23% Similarity=0.206 Sum_probs=159.9
Q ss_pred eeeeecceEeEeCC-----eEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCC
Q 000998 148 LTILDDLSGIIRPS-----RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVA 222 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 222 (1194)
..+++|+|+.+++| |+++|+|||||||||||++|+|.++|+ +|+. + ....++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35789999999999 779999999999999999999999886 7752 1 2346899999976666
Q ss_pred CCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 000998 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1194)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1194)
..||+|++.... .+. + .....++.+++.+||.+.++..++
T Consensus 427 ~~tv~e~~~~~~--~~~---~---------------------------------~~~~~~~~~l~~l~l~~~~~~~~~-- 466 (608)
T 3j16_B 427 PGTVRQLFFKKI--RGQ---F---------------------------------LNPQFQTDVVKPLRIDDIIDQEVQ-- 466 (608)
T ss_dssp CSBHHHHHHHHC--SST---T---------------------------------TSHHHHHHTHHHHTSTTTSSSBSS--
T ss_pred CccHHHHHHHHh--hcc---c---------------------------------ccHHHHHHHHHHcCChhhhcCChh--
Confidence 789999875321 110 0 001235678899999988777664
Q ss_pred cCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000998 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1194)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1194)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+..+ .+|+.++|+.+++..++|+|++|+
T Consensus 467 ---~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g-~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 467 ---HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK-KTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp ---SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEECE
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEe
Confidence 5999999999999999999999999999999999999999999999865444 456668999999999999999998
Q ss_pred C--CeEEEecChhhHHH
Q 000998 383 E--GQIVYQGPRVSVLD 397 (1194)
Q Consensus 383 ~--G~iv~~G~~~~~~~ 397 (1194)
+ |+++..|+++++..
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999999875
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.96 E-value=2.1e-31 Score=325.95 Aligned_cols=154 Identities=17% Similarity=0.177 Sum_probs=114.0
Q ss_pred eEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhh
Q 000998 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW 928 (1194)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~ 928 (1194)
++.+++|++++|+|+||||||||+++++|.... .|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 458999999999999999999999999985431 122 12445566531 12333221
Q ss_pred hcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----H
Q 000998 929 LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR-----A 1003 (1194)
Q Consensus 929 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~-----~ 1003 (1194)
+.. .. +++ +...++..+.+.. +..||+||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -HcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 111 11 112 2234555555433 3579999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCc---------HHHHHhcCeEEEEcc
Q 000998 1004 AAIVMRTVRNIVNTGRTIVCTIHQPS---------IDIFESFDELLFMKR 1044 (1194)
Q Consensus 1004 ~~~i~~~l~~l~~~g~tvi~~~H~~~---------~~~~~~~d~~~~l~~ 1044 (1194)
+..+.++++.+++.|.|||+|+|+.. ..+...+|++++|.+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ 442 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 442 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEE
Confidence 99999999999888999999999971 235567999999985
No 106
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=8.5e-29 Score=313.41 Aligned_cols=182 Identities=21% Similarity=0.304 Sum_probs=149.4
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCC-CCCCCCc
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLT 918 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~-~~~~~lT 918 (1194)
+++.+|+||||++++|+++||+|||||||||||++|+| |.| +|.+.... ..++|++|+. .+++.+|
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~~---~~~~~v~q~~~~~~~~lt 512 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQEE---CRTVYVEHDIDGTHSDTS 512 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTTT---SCEEETTCCCCCCCTTSB
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccccc---eeEEEEcccccccccCCc
Confidence 45689999999999999999999999999999999995 222 44433211 2368999974 6778999
Q ss_pred HHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCC-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000998 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1194)
Q Consensus 919 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1194)
|.|++.+ ... .. .+.++++++.+|+. +..+..+ ..|||||||||+||++|+.+|+||||||||+
T Consensus 513 v~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 513 VLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp HHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred HHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 9999976 111 11 35678899999994 5566554 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEE-EeCCC
Q 000998 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1194)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~-~~g~~ 1054 (1194)
|||+.++..+++.|++ .|.|||+++||++ .+...||++++|.+ |+++ +.|+.
T Consensus 578 ~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp TCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 9999999999999988 5999999999975 46678999999985 6775 78875
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=2.6e-29 Score=316.31 Aligned_cols=205 Identities=23% Similarity=0.307 Sum_probs=134.1
Q ss_pred eEEeeeeeEEEeCCcEEEEEccCCCChHHHH---------------------hhhcCCCCCC--ee---EEEEEEcCccC
Q 000998 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLM---------------------DVLAGRKTGG--II---EGDIYISGYPK 895 (1194)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl---------------------~~L~g~~~~~--~~---~G~i~i~g~~~ 895 (1194)
..+|+||||+|++||++||+||||||||||+ +++.|...++ .+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999997 5665543321 11 45677777654
Q ss_pred ChhcccceeeEeecCCCC-------------------CCCCcHHHHHHHHhhhcCCCcCcHHHHH------HHHHHHHHH
Q 000998 896 RQETFARISGYCEQNDIH-------------------SPGLTVLESLLFSAWLRLPSEIELETQR------AFVEEVMEL 950 (1194)
Q Consensus 896 ~~~~~~~~~gyv~Q~~~~-------------------~~~lTv~e~l~f~~~lr~~~~~~~~~~~------~~v~~~l~~ 950 (1194)
... .++.+||++|...+ ++.+||+||+.+...+..... ...... ....++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 23345666664332 356899999987433221110 000000 011235778
Q ss_pred cCCCcc-cCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000998 951 VELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027 (1194)
Q Consensus 951 l~l~~~-~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 1027 (1194)
++|.+. .+..+ ..|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|++++++|.|||+++||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 888764 45443 5899999999999999999998 999999999999999999999999998889999999999
Q ss_pred CcHHHHHhcCeEEEEc-----cCcEEEEeCCCC
Q 000998 1028 PSIDIFESFDELLFMK-----RGGELIYAGPLG 1055 (1194)
Q Consensus 1028 ~~~~~~~~~d~~~~l~-----~gG~~~~~g~~~ 1055 (1194)
++ ....||++++|. ++|++++.|++.
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 75 456799999992 368999999864
No 108
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=6.9e-25 Score=275.26 Aligned_cols=107 Identities=22% Similarity=0.259 Sum_probs=91.8
Q ss_pred HHHHHHHhCCcc-cccccccCccCCCCChhhhhHHHHHHHHhCCC---cEeEEecCCCCCCHHHHHHHHHHHHHHHhccC
Q 000998 282 VEYIMKILGLDT-CADTLVGDEMLKGISGGQKKRLTTGELLVGPA---RVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357 (1194)
Q Consensus 282 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~---~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~ 357 (1194)
+..+|+.+||.. ..+..+ ..|||||||||+||++|+.+| ++|+|||||+|||+.+...+++.|++++..
T Consensus 825 ~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-- 897 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-- 897 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 467899999986 455544 469999999999999999764 999999999999999999999999998753
Q ss_pred CeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhHH
Q 000998 358 GTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1194)
Q Consensus 358 ~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 396 (1194)
+.+|+.++|+.+++ ..+|+|++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 45566688888876 689999999 789999999998875
No 109
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=2.4e-24 Score=273.09 Aligned_cols=109 Identities=21% Similarity=0.278 Sum_probs=91.6
Q ss_pred HHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCC---cEeEEecCCCCCCHHHHHHHHHHHHHHHhccC
Q 000998 281 VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA---RVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357 (1194)
Q Consensus 281 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~---~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~ 357 (1194)
++..+|+.+||... .+| +....|||||||||+||++|+.+| ++|+|||||+|||+.+...|++.|+++++. |
T Consensus 784 ~~~~~L~~vGL~~~---~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G 858 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-G 858 (916)
T ss_dssp HHHHHHHHTTGGGS---BTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHcCCchh---hcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-C
Confidence 46778999999752 222 344579999999999999999865 799999999999999999999999998753 4
Q ss_pred CeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhHH
Q 000998 358 GTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1194)
Q Consensus 358 ~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 396 (1194)
. +|+.+.|+.+.+ ..+|+|++| ++|+|++.|+++++.
T Consensus 859 ~-TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 859 N-TVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp C-EEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred C-EEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 4 556688888776 459999999 899999999999985
No 110
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.91 E-value=1.8e-24 Score=271.99 Aligned_cols=108 Identities=23% Similarity=0.290 Sum_probs=93.6
Q ss_pred HHHHHHHHhCCccc-ccccccCccCCCCChhhhhHHHHHHHHhCC---CcEeEEecCCCCCCHHHHHHHHHHHHHHHhcc
Q 000998 281 VVEYIMKILGLDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGP---ARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356 (1194)
Q Consensus 281 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~---~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~ 356 (1194)
++..+|+.+||... .+.. +..|||||||||+||++|+.+ |++|+|||||+|||..+...|++.|+++++.
T Consensus 709 ~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~- 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA- 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-
Confidence 47889999999863 3443 346999999999999999996 7999999999999999999999999998753
Q ss_pred CCeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhHH
Q 000998 357 DGTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1194)
Q Consensus 357 ~~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 396 (1194)
+.+|+.++|+.+++ ..+|+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 45566688999888 889999999 799999999998874
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=2.2e-24 Score=271.77 Aligned_cols=108 Identities=22% Similarity=0.250 Sum_probs=92.1
Q ss_pred HHHHHHHhCCcc-cccccccCccCCCCChhhhhHHHHHHHHhCC---CcEeEEecCCCCCCHHHHHHHHHHHHHHHhccC
Q 000998 282 VEYIMKILGLDT-CADTLVGDEMLKGISGGQKKRLTTGELLVGP---ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357 (1194)
Q Consensus 282 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkqRvsia~al~~~---~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~ 357 (1194)
+..+|+.+||.. ..+..+ ..|||||||||+||++|+.+ |++|+|||||+|||+.+...|++.|++++..
T Consensus 843 ~~~~L~~lgL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-- 915 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPA-----PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK-- 915 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCG-----GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCcccccCcc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 567899999976 444444 46999999999999999986 4999999999999999999999999998753
Q ss_pred CeEEEEEecChhHHHhhcCeEEEE------cCCeEEEecChhhHHH
Q 000998 358 GTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVLD 397 (1194)
Q Consensus 358 ~t~ii~~~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~~ 397 (1194)
+.+|+.++|+.+++ ..+|+|++| ++|++++.|+++++..
T Consensus 916 G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 916 GNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 45566688888876 689999999 7899999999988754
No 112
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=2.5e-24 Score=256.36 Aligned_cols=203 Identities=17% Similarity=0.157 Sum_probs=139.2
Q ss_pred EEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCC------------------------------------CeeEE
Q 000998 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG------------------------------------GIIEG 886 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~------------------------------------~~~~G 886 (1194)
.+++++++.+.+| +++|+|||||||||||++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4688999999999 9999999999999999999553211 01157
Q ss_pred EEEEcCccCChhc---c-cceeeEeecCCCCCCCCcHHHHHHHHhhhc-----------------------CCCcC----
Q 000998 887 DIYISGYPKRQET---F-ARISGYCEQNDIHSPGLTVLESLLFSAWLR-----------------------LPSEI---- 935 (1194)
Q Consensus 887 ~i~i~g~~~~~~~---~-~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr-----------------------~~~~~---- 935 (1194)
.+.+||.+++... . ...+++++|++.++.. +..+...|--... .....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999999876422 2 2347999998776543 4444333311100 00000
Q ss_pred ------------------------------cHHHHHHHHHHHHHHcCCCccc----------------CC---cccC---
Q 000998 936 ------------------------------ELETQRAFVEEVMELVELTSLS----------------GA---LIGL--- 963 (1194)
Q Consensus 936 ------------------------------~~~~~~~~v~~~l~~l~l~~~~----------------~~---~~~~--- 963 (1194)
........+++.++.+++.... +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0000112344455555543310 00 0110
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 000998 964 ---PGING-LSTEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFD 1037 (1194)
Q Consensus 964 ---~~~~~-LSgGqrqrl~ia~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d 1037 (1194)
..+.. |||||||||+||++|+.+| +||||||||+|||+.+...|.+.|++++ +|+|||+|||++ ++...+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 00112 7999999999999999999 9999999999999999999999999997 699999999997 4567899
Q ss_pred eEEEE----ccCcEEEEe
Q 000998 1038 ELLFM----KRGGELIYA 1051 (1194)
Q Consensus 1038 ~~~~l----~~gG~~~~~ 1051 (1194)
++++| .+ |+++..
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 74 666544
No 113
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.3e-27 Score=278.79 Aligned_cols=195 Identities=17% Similarity=0.097 Sum_probs=146.0
Q ss_pred eeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEE-E-EEEcCccCChhcccceeeEeecCCC---CCCCCcHHH
Q 000998 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-D-IYISGYPKRQETFARISGYCEQNDI---HSPGLTVLE 921 (1194)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~Q~~~---~~~~lTv~e 921 (1194)
++|+.+++|++++|+||||||||||+++|+|... +.+| + |.+||. .++.++|++|+.. +.+.+|++|
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhh
Confidence 7999999999999999999999999999999876 4579 8 999983 2567899999874 345679999
Q ss_pred HHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-
Q 000998 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE--LVANPSI----VFMDE- 994 (1194)
Q Consensus 922 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~a--L~~~p~i----llLDE- 994 (1194)
|+ |+........ ..+.+.++++.+|+.+..+ ...|||||||||+|||+ |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~~-----~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGAT-----LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSCC-----SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCcc-----hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 98 6543211100 0122345566667665544 25799999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc--H---HHHHhcCe-----EEEEccCcEEEEeCCCCCc----hhH
Q 000998 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS--I---DIFESFDE-----LLFMKRGGELIYAGPLGSK----SCE 1060 (1194)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~--~---~~~~~~d~-----~~~l~~gG~~~~~g~~~~~----~~~ 1060 (1194)
||++||+. ...+.+.+++ .|.|+|+++|+.+ . .+...+|+ +++|.++|+++ .|+.... ...
T Consensus 269 Pts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~ 343 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTS 343 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHH
T ss_pred cccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHH
Confidence 99999999 5555555554 3889999999976 3 34467899 99998346677 7775322 123
Q ss_pred HHHHHHh
Q 000998 1061 LIKYFEA 1067 (1194)
Q Consensus 1061 ~~~~f~~ 1067 (1194)
+.+||..
T Consensus 344 i~~~f~g 350 (460)
T 2npi_A 344 IREYFYG 350 (460)
T ss_dssp HHHHHHC
T ss_pred HHHHhCC
Confidence 4456653
No 114
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.3e-26 Score=272.57 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=141.2
Q ss_pred cceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceee-E-EEECCccCCCCCCCceEEEEecCCC---CCCCCCHH
Q 000998 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-K-ITYNGHGFKEFVPPRTSAYVSQQDW---QVAEMTVR 227 (1194)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G-~-i~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV~ 227 (1194)
++|+.+++|++++|+||||||||||+++|+|.+.+. +| + |.++|. +++.++|++|+.. +...+||+
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 799999999999999999999999999999998654 89 8 999982 3567899999873 45668999
Q ss_pred HHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000998 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1194)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1194)
||+ |+......... ...+..+++.+||.+..+ ...|
T Consensus 201 eni-~~~~~~~~~~~------------------------------------~~~~~~ll~~~gl~~~~~-------~~~L 236 (460)
T 2npi_A 201 LPT-WGQSLTSGATL------------------------------------LHNKQPMVKNFGLERINE-------NKDL 236 (460)
T ss_dssp CTT-CSCBCBSSCCS------------------------------------SCCBCCEECCCCSSSGGG-------CHHH
T ss_pred hhh-cccccccCcch------------------------------------HHHHHHHHHHhCCCcccc-------hhhh
Confidence 999 75432100000 000223455678876554 2469
Q ss_pred ChhhhhHHHHHHH--HhCCCcE----eEEec-CCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh-----HHHhhc
Q 000998 308 SGGQKKRLTTGEL--LVGPARV----LFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP-----EAYELF 375 (1194)
Q Consensus 308 SGGqkqRvsia~a--l~~~~~v----lllDE-ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~-----~~~~~~ 375 (1194)
||||||||++|++ |+.+|++ |+||| ||+|||+. ...|.+.+++ .+.++|+++|++.+ ++..++
T Consensus 237 SgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~~ 311 (460)
T 2npi_A 237 YLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTFG 311 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHhc
Confidence 9999999999999 9999999 99999 99999999 5555555443 35565554544331 667899
Q ss_pred Ce-----EEEEc-CCeEEEecChhhHH
Q 000998 376 DD-----VILLS-EGQIVYQGPRVSVL 396 (1194)
Q Consensus 376 D~-----vilL~-~G~iv~~G~~~~~~ 396 (1194)
|+ |++|+ +|+++ .|+++++.
T Consensus 312 dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 312 PELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred ccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 99 99999 99999 99887653
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.88 E-value=7.1e-23 Score=243.80 Aligned_cols=236 Identities=13% Similarity=0.089 Sum_probs=148.2
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-----------------------------------Ccee
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-----------------------------------LQVS 192 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-----------------------------------~~~~ 192 (1194)
..+|+++++.+.+| +++|+|||||||||||++|++.+... ..-.
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 99999999999999999998776531 0126
Q ss_pred eEEEECCccCCCCCC----CceEEEEecCCCCCCCCCHHHHHHHhhhccCC-CCc----hhhhHHHHHHHHHhCCCCC--
Q 000998 193 GKITYNGHGFKEFVP----PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV-GSK----YDMITELARREKIAGIKPD-- 261 (1194)
Q Consensus 193 G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-~~~----~~~~~~~~~~e~~~~~~~~-- 261 (1194)
|++.+||.+++.... ...+++++|++.++.. +..+...|.-..... ... +.......+ +...-....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~-~~~~l~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVS-RLERLQASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HHHHC------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HHHHHHhhhhh
Confidence 889999988753211 2348999999765443 666555543221100 000 000000000 000000000
Q ss_pred ---------chHHHHHHHhh-----------ccCcchhHHHHHHHHHhCCcccc----------------cc---cccC-
Q 000998 262 ---------EDLDIFMKSFA-----------LGGQKTSLVVEYIMKILGLDTCA----------------DT---LVGD- 301 (1194)
Q Consensus 262 ---------~d~~~~~k~~~-----------~~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~- 301 (1194)
..++.+.+... ......+..++..++.++++... +. .++.
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 00000000000 00111234466677778776411 00 1111
Q ss_pred -----ccCCC-CChhhhhHHHHHHHHhCCC--cEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHh
Q 000998 302 -----EMLKG-ISGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373 (1194)
Q Consensus 302 -----~~~~~-LSGGqkqRvsia~al~~~~--~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 373 (1194)
..++. |||||||||+||++|+.+| ++|+|||||+|||+.+...|.+.|+++++ +.+ |++++|.. ++..
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~--~~~-vi~itH~~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQ-VLVVTHLA-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSCH-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC--CCE-EEEEeCcH-HHHh
Confidence 11222 6999999999999999999 99999999999999999999999999862 444 55567775 5678
Q ss_pred hcCeEEEE----cCCeEEEec
Q 000998 374 LFDDVILL----SEGQIVYQG 390 (1194)
Q Consensus 374 ~~D~vilL----~~G~iv~~G 390 (1194)
.+|++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987654
No 116
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=3e-25 Score=237.40 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=98.1
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcH
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 919 (1194)
+++.+|+|| ++||++||+||||||||||+++|+|. . +.+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 345678886 89999999999999999999999998 5 34555521101111123456799999976
Q ss_pred HHHH-HHHh----hhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000998 920 LESL-LFSA----WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1194)
Q Consensus 920 ~e~l-~f~~----~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 994 (1194)
+||+ .+.. .+... .. .+.++++++. + | ||||||+|||||+.+|+||||||
T Consensus 76 ~enl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDM--VE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTTT--SC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4444 2211 11100 00 1224444442 1 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000998 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1194)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 1029 (1194)
||+| ++..+++.|+++ ++|+||| +|||++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888899999988 6699999 999965
No 117
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=5.9e-22 Score=230.60 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=74.4
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 000998 966 INGLSTEQRKRLTIAVELV------ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1194)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~------~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 1039 (1194)
+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|.|||+++|+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 699999999999999999999999999999888999999999965 46789999
Q ss_pred EEEccCcEEEE
Q 000998 1040 LFMKRGGELIY 1050 (1194)
Q Consensus 1040 ~~l~~gG~~~~ 1050 (1194)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99985 77753
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.86 E-value=3.1e-23 Score=215.57 Aligned_cols=150 Identities=16% Similarity=0.199 Sum_probs=104.2
Q ss_pred eeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCC-CCCcHHHHHHH
Q 000998 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS-PGLTVLESLLF 925 (1194)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~-~~lTv~e~l~f 925 (1194)
||||++++||+++|+||||||||||++++.+-.. .+++ . ...|+++|++... ..-++.+.+.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999764211 1111 1 1126777764321 00111222111
Q ss_pred HhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH---
Q 000998 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR--- 1002 (1194)
Q Consensus 926 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~--- 1002 (1194)
.. +.....+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 65 -----------------~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 65 -----------------IV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp -----------------HH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred -----------------HH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11 112223444333322 346999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 000998 1003 -------------AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038 (1194)
Q Consensus 1003 -------------~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 1038 (1194)
....+++.++++.++|.|||+++|+++ ..+.+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 668899999988777999999999964 3344444
No 119
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=1.3e-21 Score=224.42 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE--
Q 000998 966 INGLSTEQRKRLTIAVELV----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL-- 1039 (1194)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~-- 1039 (1194)
+..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. .|.|||+|+|+++ +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 3579999999999999997 5789999999999999999999999999984 5899999999964 56789986
Q ss_pred EEEccCcEEEEeCCCC
Q 000998 1040 LFMKRGGELIYAGPLG 1055 (1194)
Q Consensus 1040 ~~l~~gG~~~~~g~~~ 1055 (1194)
++|.+|...+.....+
T Consensus 294 v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEESSSCEEEEECCC-
T ss_pred EEEeCCEEEEEEEEcc
Confidence 8888777777666543
No 120
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.83 E-value=1.2e-20 Score=219.64 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=72.6
Q ss_pred ccCCCCChhhhhHHHHHHHHh------CCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhc
Q 000998 302 EMLKGISGGQKKRLTTGELLV------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1194)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~------~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1194)
..+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+ .+ .+|+.++|+.+. ...+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g-~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LN-KVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SS-SEEEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CC-CEEEEEecchHH-HHhC
Confidence 345679999999999999999 79999999999999999999999999998864 34 455557788766 7889
Q ss_pred CeEEEEcCCeEEE
Q 000998 376 DDVILLSEGQIVY 388 (1194)
Q Consensus 376 D~vilL~~G~iv~ 388 (1194)
|+|++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999874
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.83 E-value=5.6e-23 Score=219.76 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=95.5
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCH
Q 000998 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1194)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1194)
++.+|+|| ++|++++|+|||||||||||++|+|. .|+ +|+|............++.++|++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 34688886 89999999999999999999999998 664 777732101111112356799999976
Q ss_pred HHHH-HHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 000998 227 RETL-DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1194)
Q Consensus 227 ~E~l-~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1194)
+||+ .|..... + ...... ....++.+++. |
T Consensus 76 ~enl~~~~~~~~------~---------~~~~~~------------------~~~~~~~~l~~-g--------------- 106 (208)
T 3b85_A 76 NEKIDPYLRPLH------D---------ALRDMV------------------EPEVIPKLMEA-G--------------- 106 (208)
T ss_dssp ----CTTTHHHH------H---------HHTTTS------------------CTTHHHHHHHT-T---------------
T ss_pred HHHHHHHHHHHH------H---------HHHHhc------------------cHHHHHHHHHh-C---------------
Confidence 5666 3421000 0 000000 01124444443 2
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHH
Q 000998 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1194)
Q Consensus 306 ~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 371 (1194)
+ ||||||+|||||+.+|++|+|||||+| ++..+.+.|+++ . .+++|+ ++|+..++
T Consensus 107 -l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~--~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 -I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G--FGSKMV-VTGDITQV 161 (208)
T ss_dssp -S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C--TTCEEE-EEEC----
T ss_pred -C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c--CCCEEE-EECCHHHH
Confidence 2 999999999999999999999999999 888899998876 3 245666 77877655
No 122
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.82 E-value=4.3e-23 Score=231.82 Aligned_cols=158 Identities=13% Similarity=0.213 Sum_probs=118.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1194)
.++|+|+|+.|++|++++|+||||||||||+++|+|.+ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 36899999999999999999999999999999999987 6887 357788887665 5888
Q ss_pred H-HHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 000998 228 E-TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1194)
Q Consensus 228 E-~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1194)
| ||.|.... . + .+...++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~-------~---~--------------------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------T---H--------------------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE-------C---H--------------------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc-------c---H--------------------------------HHHHHHHHH-hHccCC---c----cC
Confidence 7 77663110 0 0 012233333 444444 3 46
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000998 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1194)
Q Consensus 307 LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1194)
|||||||| |||++.+|+||+ ||+||+.+...|.. + +|. .++...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH~-~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HSR-VQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TTT-EEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hCC-HHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999888752 1 232 2345678999 9999999
Q ss_pred EEecChhhHHHHHHhc
Q 000998 387 VYQGPRVSVLDFFASM 402 (1194)
Q Consensus 387 v~~G~~~~~~~~F~~~ 402 (1194)
++.|+++++..+|.++
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999997666553
No 123
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.81 E-value=1.9e-22 Score=235.90 Aligned_cols=173 Identities=10% Similarity=0.092 Sum_probs=133.0
Q ss_pred ceeeeecceEeEeCCe--------------------EEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC
Q 000998 147 KLTILDDLSGIIRPSR--------------------LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206 (1194)
Q Consensus 147 ~~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~ 206 (1194)
...+|+|||+.+++|+ +++|+||||||||||+|+|+|.+++. +|+|.++|.+.+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t--- 108 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT--- 108 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---
Confidence 3568999999999999 99999999999999999999998876 899999987643
Q ss_pred CCceEEEEecCCCCCCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHH
Q 000998 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIM 286 (1194)
Q Consensus 207 ~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l 286 (1194)
+ .+|++|++ .++.+|+.||+.+... ...++.++
T Consensus 109 --~-~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L 141 (413)
T 1tq4_A 109 --M-ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYL 141 (413)
T ss_dssp --C-CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHH
T ss_pred --e-eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHH
Confidence 1 27899986 4778899888744210 00156678
Q ss_pred HHhCCcccccccccCccCCCCChh--hhhHHHHHHHHhC----------CCcEeEEecCCCCCCHHHHHHHHHHHHHHHh
Q 000998 287 KILGLDTCADTLVGDEMLKGISGG--QKKRLTTGELLVG----------PARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1194)
Q Consensus 287 ~~lgL~~~~dt~vg~~~~~~LSGG--qkqRvsia~al~~----------~~~vlllDEptsgLD~~~~~~i~~~l~~~~~ 354 (1194)
+.++|.+.. ..+ .|||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 142 ~~~~L~~~~-~~~------~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~ 214 (413)
T 1tq4_A 142 EKMKFYEYD-FFI------IISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV 214 (413)
T ss_dssp HHTTGGGCS-EEE------EEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCccC-CeE------EeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH
Confidence 888887642 221 29999 9999999999999 9999999999999999999999999998752
Q ss_pred ----cc---CCeEEEEEecChhH--HHhhcCeEE
Q 000998 355 ----AL---DGTTVISLLQPAPE--AYELFDDVI 379 (1194)
Q Consensus 355 ----~~---~~t~ii~~~q~~~~--~~~~~D~vi 379 (1194)
.. ..++++...|...+ +.+++|+|.
T Consensus 215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 21 13555545555554 666666663
No 124
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.81 E-value=6.1e-23 Score=240.03 Aligned_cols=171 Identities=15% Similarity=0.159 Sum_probs=135.0
Q ss_pred eEEeeeeeEEEeCCc--------------------EEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhccc
Q 000998 842 LQLLVNVTGAFRPGV--------------------LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901 (1194)
Q Consensus 842 ~~iL~~vs~~i~~Ge--------------------~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~ 901 (1194)
+.+|++||+++++|+ ++||+||||||||||+|+|+|... +.+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----
Confidence 357899999999999 999999999999999999999876 35788988887542
Q ss_pred ceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHH--HHHHHHH
Q 000998 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE--QRKRLTI 979 (1194)
Q Consensus 902 ~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqrl~i 979 (1194)
+ .+|++|++ .++.+|+.|++.++. + +..++++++.+++.+... .. .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~-~~------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDF-FI------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSE-EE------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCC-eE------EeCCCCccHHHHHH
Confidence 1 27899985 567889999875532 1 123678888888866522 11 28999 9999999
Q ss_pred HHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEecCCcH-HHHHhcCeE
Q 000998 980 AVELVA----------NPSIVFMDEPTSGLDARAAAIVMRTVRNIV-----NTG----RTIVCTIHQPSI-DIFESFDEL 1039 (1194)
Q Consensus 980 a~aL~~----------~p~illLDEPTsgLD~~~~~~i~~~l~~l~-----~~g----~tvi~~~H~~~~-~~~~~~d~~ 1039 (1194)
|++|+. +|++++|||||+|||+.++..+++.++++. +.| .+|++++|+.+. ++-+.+|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 333 678899998762 255667777
Q ss_pred E
Q 000998 1040 L 1040 (1194)
Q Consensus 1040 ~ 1040 (1194)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 4
No 125
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=9.8e-24 Score=226.50 Aligned_cols=185 Identities=15% Similarity=0.056 Sum_probs=117.2
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcH
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 919 (1194)
+...+++| .++++||+++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHh
Confidence 34567778 6899999999999999999999999999764 233333333332221 224568999999877777888
Q ss_pred HHHHHHHhhhcC---CCcCcHHHHHHHHHHH------HHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000998 920 LESLLFSAWLRL---PSEIELETQRAFVEEV------MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1194)
Q Consensus 920 ~e~l~f~~~lr~---~~~~~~~~~~~~v~~~------l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1194)
.+++.+...... ....+..+.++.+++. ++.+++.+.++.. +..|| +|+.+|+++
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~ 145 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQ 145 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHH
Confidence 777642211110 0012333333444443 3334443333332 13466 889999999
Q ss_pred EEeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEccCc
Q 000998 991 FMDEPTSGL----DARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1194)
Q Consensus 991 lLDEPTsgL----D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG 1046 (1194)
+|||||+|+ |+..+..+++.++++.+ .|.|||+++|+++ ++...+|++++|.+.|
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 999999998 78899999999999974 5899999999986 5778899999996544
No 126
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.81 E-value=7.1e-21 Score=198.64 Aligned_cols=148 Identities=17% Similarity=0.177 Sum_probs=99.5
Q ss_pred EEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCC
Q 000998 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933 (1194)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~ 933 (1194)
.++|+||||||||||+++|+|... |.++|.+... ...++.+||++|+. ++.+++ + +.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~~- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFFT- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcCC-
Confidence 589999999999999999999653 2233322111 12356789999975 222322 1 111000
Q ss_pred cCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHH
Q 000998 934 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE-----LVANPSIVFMDE--PTSGLDARAAAI 1006 (1194)
Q Consensus 934 ~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~a-----L~~~p~illLDE--PTsgLD~~~~~~ 1006 (1194)
-....+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 66 -------------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 66 -------------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -------------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -------------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 00122222 34799999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEec---CCcHHHHHhcCeEEEEccCcEEEEeCC
Q 000998 1007 VMRTVRNIVNTGRTIVCTIH---QPSIDIFESFDELLFMKRGGELIYAGP 1053 (1194)
Q Consensus 1007 i~~~l~~l~~~g~tvi~~~H---~~~~~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1194)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 8888875 4777888886 433 35556776 3567766443
No 127
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.80 E-value=4.2e-20 Score=211.89 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=67.0
Q ss_pred CCCCChhhhhHHHHHHHHh----CCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE-
Q 000998 304 LKGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV- 378 (1194)
Q Consensus 304 ~~~LSGGqkqRvsia~al~----~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v- 378 (1194)
+..|||||||||+||++|+ .+|++|+|||||++||+.....+.+.++++.+ + ++++.++|. .++.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~-~~vi~~tH~-~~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--H-TQFIVITHN-KIVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--T-SEEEEECCC-TTGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--C-CeEEEEECC-HHHHhhCceEE
Confidence 4579999999999999996 78999999999999999999999999998742 3 445556676 5678899987
Q ss_pred -EEEcCCeEE
Q 000998 379 -ILLSEGQIV 387 (1194)
Q Consensus 379 -ilL~~G~iv 387 (1194)
++|.+|...
T Consensus 293 ~v~~~~g~s~ 302 (322)
T 1e69_A 293 GVTMVNGVSA 302 (322)
T ss_dssp EEEESSSCEE
T ss_pred EEEEeCCEEE
Confidence 888888654
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.80 E-value=1.2e-20 Score=196.11 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=55.6
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHH----------------HHHHHHHHHHHHHhccCCeEEEEEecChh
Q 000998 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS----------------TTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1194)
Q Consensus 306 ~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~----------------~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1194)
..||||||||+||+++..+|++++|||||++||+. ...++.+.++++.+. |. +++.++|+.+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~-tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GF-RYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TC-SEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CC-cEEEEeCCHH
Confidence 36999999999999999999999999999999999 558888888887654 44 4555778887
Q ss_pred HHHh
Q 000998 370 EAYE 373 (1194)
Q Consensus 370 ~~~~ 373 (1194)
++..
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7743
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.79 E-value=1.4e-20 Score=196.52 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=101.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhccCCCCc
Q 000998 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242 (1194)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 242 (1194)
.++|+||||||||||+++|+|.+. ....|... .+......++.++|++|+. ++.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999884 33344321 1111102346789999975 222222 10 00
Q ss_pred hhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHH--
Q 000998 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL-- 320 (1194)
Q Consensus 243 ~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~a-- 320 (1194)
+... +..++ .....||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~~-~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLVG-SYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEET-TEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--ccccc-ccccCcCHHHHHHHHHHhhcc
Confidence 0000 01121 2334699999999999996
Q ss_pred ---HhCCCcEeEEec--CCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEe--cChhHHHhhcCeEEEEcCCeEEE
Q 000998 321 ---LVGPARVLFMDE--ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL--QPAPEAYELFDDVILLSEGQIVY 388 (1194)
Q Consensus 321 ---l~~~~~vlllDE--ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~--q~~~~~~~~~D~vilL~~G~iv~ 388 (1194)
++.+|++++||| ||++||+.....+.+.+++ .+.++|+++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999999988874 2445777664 688888888888 5566665
No 130
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.76 E-value=1.1e-20 Score=210.38 Aligned_cols=147 Identities=15% Similarity=0.170 Sum_probs=96.3
Q ss_pred EEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcCc
Q 000998 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE 936 (1194)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~~ 936 (1194)
.+||+||||||||||+|+|+|... +.+|+|.++|.++.....++.+||++|++.+++.+||.|++.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-NC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-TC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-HH-
Confidence 479999999999999999999766 46899999998775555567899999999999999999999887543321 11
Q ss_pred HHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000998 937 LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1194)
Q Consensus 937 ~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~ 1016 (1194)
. +.+.+.++ ....+.+. ..||||||||++|||+++. ++||||||+|||+.. .+.++.+.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 11222222 22233322 4799999999999999875 999999999999886 455666655
Q ss_pred CCCEEEEEecCC
Q 000998 1017 TGRTIVCTIHQP 1028 (1194)
Q Consensus 1017 ~g~tvi~~~H~~ 1028 (1194)
. .+||+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999963
No 131
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.75 E-value=2.1e-22 Score=226.21 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=116.2
Q ss_pred EEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHH-
Q 000998 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE- 921 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e- 921 (1194)
.+|++||++|++|+++||+||||||||||+++|+|.. +|+| ++|++|++.++. .|++|
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I---------------~~~v~q~~~lf~-~ti~~~ 172 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV---------------LSFANHKSHFWL-ASLADT 172 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE---------------ECGGGTTSGGGG-GGGTTC
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE---------------EEEecCcccccc-ccHHHH
Confidence 5789999999999999999999999999999999975 3665 357788877765 47776
Q ss_pred HHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000998 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1194)
Q Consensus 922 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1194)
|+.|.. +... .+++.++.+ |.+..+ +..|||||||| ||||+.+|+||| ||+||+
T Consensus 173 ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 173 RAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp SCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred hhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 776531 1111 234455543 322222 25799999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCCCCchhHHHHHHHhc
Q 000998 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAV 1068 (1194)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~~~~~~~~~~~f~~~ 1068 (1194)
.+...++. .+|+++ .++.+|++ +|+ +|++++.|+. .++-.+|..+
T Consensus 227 ~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~----~el~~~y~~l 271 (305)
T 2v9p_A 227 QAEDRYLY--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITD----ADWKSFFVRL 271 (305)
T ss_dssp TTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH----HHHHHHHHHS
T ss_pred HHHHHHHH--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCH----HHHHHHHHHH
Confidence 99888752 188875 45789999 997 5899988875 3455566654
No 132
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.75 E-value=3.3e-20 Score=209.63 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=116.1
Q ss_pred eeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cc--cceeeEeecCCC-CCC
Q 000998 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDI-HSP 915 (1194)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~~ 915 (1194)
+++|+.+++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. +.|
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 46888899999999999999999999999999754 3468999999875321 22 246899999988 888
Q ss_pred CCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 000998 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMD 993 (1194)
Q Consensus 916 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLD 993 (1194)
.+|++|++.+... + ..+ ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+||
T Consensus 169 ~~~v~e~l~~~~~-~-~~d----------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 169 ATVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp HHHHHHHHHHHHH-T-TCS----------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHH-c-CCc----------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 8999999987532 1 100 12345556655444433 4689 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 000998 994 EPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQ 1027 (1194)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~ 1027 (1194)
||+|||+... ++++. ..|.|+|++||.
T Consensus 229 -ptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 229 -GNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp -GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred -CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 9999998754 24454 358999999994
No 133
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.75 E-value=5.9e-20 Score=207.57 Aligned_cols=174 Identities=19% Similarity=0.184 Sum_probs=126.3
Q ss_pred eecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC-------C--CceEEEEecCCC-C
Q 000998 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------P--PRTSAYVSQQDW-Q 220 (1194)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-------~--~~~~~yv~Q~d~-~ 220 (1194)
++++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... . ++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999998765 899999998764321 1 235899999988 8
Q ss_pred CCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCccccccccc
Q 000998 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1194)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1194)
++.+||+|++.++... + ++ ..+++.+|+.+..+..++
T Consensus 167 ~~~~~v~e~l~~~~~~-~----~d--------------------------------------~~lldt~gl~~~~~~~~~ 203 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYSLME 203 (302)
T ss_dssp CHHHHHHHHHHHHHHT-T----CS--------------------------------------EEEECCCCCSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHc-C----Cc--------------------------------------chHHhcCCCCcchhHHHH
Confidence 8899999999875321 0 00 012334566665555443
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCc--EeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEec---------Chh
Q 000998 301 DEMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ---------PAP 369 (1194)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~~~--vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q---------~~~ 369 (1194)
.|| |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.+.++ ++| ...
T Consensus 204 -----eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 204 -----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp -----HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred -----HHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 499 999999999999999 99999 99999998542 3333333455555 555 223
Q ss_pred HHHhhcCeEEEEcCCeE
Q 000998 370 EAYELFDDVILLSEGQI 386 (1194)
Q Consensus 370 ~~~~~~D~vilL~~G~i 386 (1194)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 34456678888888864
No 134
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.74 E-value=1.2e-19 Score=202.16 Aligned_cols=147 Identities=16% Similarity=0.219 Sum_probs=89.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhccCCCCc
Q 000998 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242 (1194)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 242 (1194)
.++|+||||||||||+|+|+|...+. +|+|.++|.++......+.++|++|++.+++.+||.||+.|+....... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~-~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN-C 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT-C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH-H
Confidence 47999999999999999999998776 8999999988755455678999999999999999999998865432110 0
Q ss_pred hhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHh
Q 000998 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322 (1194)
Q Consensus 243 ~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~ 322 (1194)
.+. +...+. ....+... ..|||||||||++||+++
T Consensus 80 ~~~------------------------------------i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 WEP------------------------------------IEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp SHH------------------------------------HHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCE
T ss_pred HHH------------------------------------HHHHHH----HHHHhhhH-----HhcCcccchhhhhheeee
Confidence 000 111111 11122222 259999999999999987
Q ss_pred CCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecCh
Q 000998 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368 (1194)
Q Consensus 323 ~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~ 368 (1194)
. ++|+|||+.|||+.. .+.++.+.+. .++|+ +.+..
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~-Vi~K~ 150 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIP-VIAKA 150 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEE-EETTG
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEE-EEecc
Confidence 5 999999999999987 3444444432 45555 44444
No 135
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.74 E-value=1.4e-19 Score=207.30 Aligned_cols=130 Identities=17% Similarity=0.135 Sum_probs=102.7
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeeEeecCCCCCCCCcHHHH
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 922 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~ 922 (1194)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+.-. ...++.++|++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 78899999999999999999999999999999998763 47999999864210 00111222221
Q ss_pred HHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000998 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1194)
Q Consensus 923 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~ 1002 (1194)
+ |||+||++||++|..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccC
Q 000998 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1194)
Q Consensus 1003 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 1045 (1194)
.+++.|+.+...+.|+|+|+|+++ ....+||+++|.+|
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 356777776543458999999987 56779999999865
No 136
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.73 E-value=4.3e-22 Score=215.35 Aligned_cols=153 Identities=11% Similarity=0.028 Sum_probs=98.3
Q ss_pred EEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh----hcccceeeEeecCCCCCCCCc
Q 000998 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSPGLT 918 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~lT 918 (1194)
.-|+||||++++|+++||+||||||||||+++|+|..+ |+|.+ |.+... ...++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 46889999999999999999999999999999999652 67777 655321 113456899999876554433
Q ss_pred H-HHHHHHHhhhcCC-CcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHH-----HHHHhhCCCEEE
Q 000998 919 V-LESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI-----AVELVANPSIVF 991 (1194)
Q Consensus 919 v-~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~i-----a~aL~~~p~ill 991 (1194)
. .+++.+ ..+... ...+. ..++++++...+. +.+ ..||||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~~-~~~~~~~~g~~~----~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEY-DNYANNFYGTLK----SEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEE-EEETTEEEEEEH----HHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhh-hhcccccCCCcH----HHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 111110 001100 01111 2356666643321 111 3699999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHH
Q 000998 992 MDEPTSGLDARAAAIVMRTVRNIV 1015 (1194)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~ 1015 (1194)
|||||+++|..+...|.+.++++.
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999999998888764
No 137
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.73 E-value=3.2e-17 Score=189.20 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=68.6
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 000998 966 INGLSTEQRK------RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1194)
Q Consensus 966 ~~~LSgGqrq------rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 1039 (1194)
+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.+.|.|||+++|++. +...||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 4679999999 677788888899999999999999999999999999998777899999999954 56889999
Q ss_pred EEEc
Q 000998 1040 LFMK 1043 (1194)
Q Consensus 1040 ~~l~ 1043 (1194)
++|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
No 138
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.73 E-value=2.2e-21 Score=209.71 Aligned_cols=156 Identities=12% Similarity=0.074 Sum_probs=98.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC----CceEEEEecCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1194)
..-|+|||+.+++|++++|+||||||||||+++|+|.+ + |+|.+ |.+.....+ ++.++|++|++..|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999977 3 88888 776543322 3568999998765544
Q ss_pred CCH-HHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCc
Q 000998 224 MTV-RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1194)
Q Consensus 224 lTV-~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1194)
++. .+++.+. ...+ ..|.. ....++++++...+ ..++
T Consensus 83 ~~~~~~~l~~~-~~~~--~~~g~--------------------------------~~~~i~~~l~~~~~-----~il~-- 120 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYAN--NFYGT--------------------------------LKSEYDKAKEQNKI-----CLFE-- 120 (218)
T ss_dssp HHHTTCEEEEE-EETT--EEEEE--------------------------------EHHHHHHHHHTTCE-----EEEE--
T ss_pred hhhccchhhhh-hccc--ccCCC--------------------------------cHHHHHHHHhCCCc-----EEEE--
Confidence 321 1111110 0000 00000 00113344443221 1221
Q ss_pred cCCCCChhhhhHHHH-----HHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHh
Q 000998 303 MLKGISGGQKKRLTT-----GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1194)
Q Consensus 303 ~~~~LSGGqkqRvsi-----a~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~ 354 (1194)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.+.....
T Consensus 121 --~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 121 --MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp --ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred --ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3599999999999 8899999999999999999999999999988877643
No 139
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.72 E-value=1.2e-17 Score=192.52 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=74.7
Q ss_pred CccCC-CCChhhhhHHHHHHHHh---------CCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhH
Q 000998 301 DEMLK-GISGGQKKRLTTGELLV---------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1194)
Q Consensus 301 ~~~~~-~LSGGqkqRvsia~al~---------~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1194)
+..++ .+|||||||++||++|+ ++|+||+|||||++||+..+..+++.++++. .++|+++|. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-----qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-----QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-----EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC-----cEEEEEEec-cc
Confidence 44555 69999999999999999 8999999999999999999999999998642 566667774 33
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhH
Q 000998 371 AYELFDDVILLSEGQIVYQGPRVSV 395 (1194)
Q Consensus 371 ~~~~~D~vilL~~G~iv~~G~~~~~ 395 (1194)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
No 140
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.72 E-value=2e-19 Score=206.84 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=117.0
Q ss_pred eeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cc--cceeeEeecCCC-CCCC
Q 000998 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDI-HSPG 916 (1194)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~~~ 916 (1194)
.+|+.+++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. +.|.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 5778889999999999999999999999999754 2368999999875321 12 346899999988 8889
Q ss_pred CcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeC
Q 000998 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDE 994 (1194)
Q Consensus 917 lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDE 994 (1194)
+|++|++.++.. + ..+ ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+||
T Consensus 227 ~tv~e~l~~~~~-~-~~d----------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD- 285 (359)
T 2og2_A 227 TVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD- 285 (359)
T ss_dssp HHHHHHHHHHHH-T-TCS----------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE-
T ss_pred hhHHHHHHHHHh-C-CCH----------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc-
Confidence 999999987532 1 000 12344556655544433 4688 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 000998 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1194)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~ 1027 (1194)
||+|||+.... +++.+ .|.|+|++||.
T Consensus 286 pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999987653 34443 58999999994
No 141
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.71 E-value=5.3e-19 Score=203.31 Aligned_cols=173 Identities=19% Similarity=0.196 Sum_probs=126.6
Q ss_pred ecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC---------CCceEEEEecCCC-CC
Q 000998 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---------PPRTSAYVSQQDW-QV 221 (1194)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 221 (1194)
+++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4689999999999999999999999999999998765 899999998764321 1235899999988 88
Q ss_pred CCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC
Q 000998 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1194)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1194)
+.+||+|++.++... + ++ ..+++.+|+.+..+..++
T Consensus 225 p~~tv~e~l~~~~~~-~----~d--------------------------------------~~lldt~Gl~~~~~~~~~- 260 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYSLME- 260 (359)
T ss_dssp HHHHHHHHHHHHHHT-T----CS--------------------------------------EEEEECCCCSSCCHHHHH-
T ss_pred hhhhHHHHHHHHHhC-C----CH--------------------------------------HHHHHhcCCChhhhhHHH-
Confidence 999999999875321 0 00 012234566655554443
Q ss_pred ccCCCCChhhhhHHHHHHHHhCCCc--EeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecC---------hhH
Q 000998 302 EMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP---------APE 370 (1194)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~~~--vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~---------~~~ 370 (1194)
.|| |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.+.|+ ++|. ...
T Consensus 261 ----eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 261 ----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ----HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 589 999999999999999 99999 99999998653 3333333455555 5552 233
Q ss_pred HHhhcCeEEEEcCCeE
Q 000998 371 AYELFDDVILLSEGQI 386 (1194)
Q Consensus 371 ~~~~~D~vilL~~G~i 386 (1194)
+....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 4456677888877763
No 142
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.71 E-value=2.1e-17 Score=190.38 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 000998 968 GLSTEQRKRLTIAVELV---------ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038 (1194)
Q Consensus 968 ~LSgGqrqrl~ia~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 1038 (1194)
.||+|||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. + . .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998863 799999994 3 2 7899
Q ss_pred EEEEccCcEEEEeCCCC
Q 000998 1039 LLFMKRGGELIYAGPLG 1055 (1194)
Q Consensus 1039 ~~~l~~gG~~~~~g~~~ 1055 (1194)
+++|. +|+++..|++.
T Consensus 337 i~~l~-~G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQ-AGRFTPVADEE 352 (359)
T ss_dssp EEEEE-TTEEEECCCTT
T ss_pred EEEEE-CCEEEecCCHH
Confidence 99998 58999988864
No 143
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=1.5e-19 Score=214.08 Aligned_cols=184 Identities=15% Similarity=0.076 Sum_probs=139.7
Q ss_pred ccccccccc-ceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCc---cCCh--------hc
Q 000998 832 LKQEGVLED-RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY---PKRQ--------ET 899 (1194)
Q Consensus 832 ~~~~~~~~~-~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~--------~~ 899 (1194)
.++....++ +..+|+++ +.+.+|++++|+||||||||||+++|+|... +..|.|.++|. ++.. ..
T Consensus 134 ~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~ 210 (438)
T 2dpy_A 134 RTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGPDG 210 (438)
T ss_dssp SCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHHHH
T ss_pred EeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccccc
Confidence 333333443 46799999 9999999999999999999999999999876 35899999997 3322 23
Q ss_pred ccceeeEeecC-CCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHH
Q 000998 900 FARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLT 978 (1194)
Q Consensus 900 ~~~~~gyv~Q~-~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ 978 (1194)
.++.++|++|+ +..++.+|+.+++.+.+...... . .++ ..+.+. ...||+|| ||++
T Consensus 211 l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~---~~v------~~~ld~------l~~lS~g~-qrvs 267 (438)
T 2dpy_A 211 RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------G---QHV------LLIMDS------LTRYAMAQ-REIA 267 (438)
T ss_dssp HHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------T---CEE------EEEEEC------HHHHHHHH-HHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------C---CCH------HHHHHh------HHHHHHHH-HHHH
Confidence 56789999995 45567889999998765321000 0 000 111121 24699999 9999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCcHHHHHhcCeEEEEccCcEEE
Q 000998 979 IAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN---T-GR-----TIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1194)
Q Consensus 979 ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~---~-g~-----tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~ 1049 (1194)
|| +.+|++ |+|||+.....+.++++++.+ + |. ||++++||++ ...+|++++|. +|+++
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~-dG~Iv 334 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAIL-DGHIV 334 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHS-SEEEE
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEe-CcEEE
Confidence 99 888887 999999999999999999865 3 64 9999999987 35689999998 48999
Q ss_pred EeCCC
Q 000998 1050 YAGPL 1054 (1194)
Q Consensus 1050 ~~g~~ 1054 (1194)
..|++
T Consensus 335 l~~~~ 339 (438)
T 2dpy_A 335 LSRRL 339 (438)
T ss_dssp ECHHH
T ss_pred EeCCH
Confidence 87753
No 144
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.71 E-value=2.4e-20 Score=200.03 Aligned_cols=185 Identities=10% Similarity=0.061 Sum_probs=112.5
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCH
Q 000998 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1194)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1194)
..++++| ..+++|++++|+||||||||||+++|+|.++. . .+.+.+.+.+... ..++.++|++|++..++.+|+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~-i--~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN-L--HFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT-C--EECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc-e--EEcccccccCCcc-cccCCCeeEecCHHHHHHHHh
Confidence 3467888 68999999999999999999999999998852 2 2222222222111 123568999999887888888
Q ss_pred HHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHH------HHHhCCccccccccc
Q 000998 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI------MKILGLDTCADTLVG 300 (1194)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~------l~~lgL~~~~dt~vg 300 (1194)
.+++.+.....+....|..... . ...++++. ++.+|+...++...
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~-~---------------------------~~~~~~~~~~~~~~l~~~gl~~~~~~~~- 132 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQ-P---------------------------VRAAAATGVPVLIEVDLAGARAIKKTMP- 132 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHH-H---------------------------HHHHHHHTCCEEEECCHHHHHHHHHHCT-
T ss_pred cCCceeehhhcCchhhcCCcHH-H---------------------------HHHHHHcCCeEEEEeCHHHHHHHHHhcC-
Confidence 8876433211110000000000 0 00112221 23334433333332
Q ss_pred CccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCC----CHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC
Q 000998 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGL----DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1194)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgL----D~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 376 (1194)
+.|| +|+.+|++++|||||+|| |+..+.++.+.++++.+..+. +++.++|+.+++..++|
T Consensus 133 ----~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~-tvi~vtHdl~~~~~~~d 196 (207)
T 1znw_A 133 ----EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF-DKVVVNRRLESACAELV 196 (207)
T ss_dssp ----TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGS-SEEEECSSHHHHHHHHH
T ss_pred ----CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC-cEEEECCCHHHHHHHHH
Confidence 2466 899999999999999998 778999999999998754444 45567899999999999
Q ss_pred eEEEEc
Q 000998 377 DVILLS 382 (1194)
Q Consensus 377 ~vilL~ 382 (1194)
+|++|.
T Consensus 197 ~i~~l~ 202 (207)
T 1znw_A 197 SLLVGT 202 (207)
T ss_dssp HHHC--
T ss_pred HHHHhc
Confidence 999984
No 145
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.70 E-value=6.2e-19 Score=200.14 Aligned_cols=128 Identities=9% Similarity=0.039 Sum_probs=96.9
Q ss_pred cceE-eEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHHH
Q 000998 153 DLSG-IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1194)
Q Consensus 153 ~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1194)
|++. .+++|++++|+||||||||||+++|+|.+.+. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 4544 38999999999999999999999999998763 331 358999999998888 9999986
Q ss_pred HhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 000998 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1194)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1194)
+... .+.... .....+..+|+.++ ....++.+ ..+||||
T Consensus 143 ~~~~-~g~~~~----------------------------------~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES----------------------------------YNRRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG----------------------------------BCHHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCChH----------------------------------HHHHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 5221 111000 00123556677777 44334444 3699999
Q ss_pred hhHHHHHHHHhCCCcEeEEecCCCCCCH
Q 000998 312 KKRLTTGELLVGPARVLFMDEISNGLDS 339 (1194)
Q Consensus 312 kqRvsia~al~~~~~vlllDEptsgLD~ 339 (1194)
||||++|++++.+|+|+|+|||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
No 146
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.69 E-value=4.9e-18 Score=192.49 Aligned_cols=182 Identities=15% Similarity=0.130 Sum_probs=115.1
Q ss_pred EEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEE-EEEEcCccCChhcccceeeEeecCCCCCCCCcHHH
Q 000998 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 921 (1194)
.+|+++++.+++|++++|+||||||||||++.|+|.... .+| .|.+.+.........+.+.++.|... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 467899999999999999999999999999999996431 235 55443333332223333333333321 23334
Q ss_pred HHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---
Q 000998 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ-RKRLTIAVELVANPSIVFMDEPTS--- 997 (1194)
Q Consensus 922 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq-rqrl~ia~aL~~~p~illLDEPTs--- 997 (1194)
++.... + ..++..+.++++++...+. +.+. +..+|.+| +||+. |+++..+|++|++||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 443221 1 1112222333333221221 1111 13589998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCc-H--------------------HHHHhcCeEEEEccC
Q 000998 998 G---LDA-RAAAIVMRTVRNIVNT-GRTIVCTIHQPS-I--------------------DIFESFDELLFMKRG 1045 (1194)
Q Consensus 998 g---LD~-~~~~~i~~~l~~l~~~-g~tvi~~~H~~~-~--------------------~~~~~~d~~~~l~~g 1045 (1194)
+ +|. .....+++.|++++++ |.|||+++|+.. . .+...||++++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6678899999999765 999999999952 1 466789999999864
No 147
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.68 E-value=4.7e-19 Score=209.91 Aligned_cols=179 Identities=14% Similarity=0.124 Sum_probs=137.2
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCc---cCCCC--------CCCceEEEEec
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKEF--------VPPRTSAYVSQ 216 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~---~~~~~--------~~~~~~~yv~Q 216 (1194)
..+|+++ +.+.+|++++|+|||||||||||++|+|..+++ .|.|.++|. ++.++ ..++.++|++|
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 5699999 999999999999999999999999999998876 899999997 44321 12467999999
Q ss_pred C-CCCCCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccc
Q 000998 217 Q-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295 (1194)
Q Consensus 217 ~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~ 295 (1194)
+ +..++.+||.+|+.+.++.... . ..++ ....
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~--------------~------~~~v---------------------------~~~l 253 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRD--------------R------GQHV---------------------------LLIM 253 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHT--------------T------TCEE---------------------------EEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh--------------C------CCCH---------------------------HHHH
Confidence 5 5567788999999875532100 0 0000 0000
Q ss_pred cccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhc--cCCe-----EEEEEecCh
Q 000998 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA--LDGT-----TVISLLQPA 368 (1194)
Q Consensus 296 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~--~~~t-----~ii~~~q~~ 368 (1194)
| .+..+|||| |||+|| +++|++ |+|||+.+...+.+.+.++.+. .+++ +|+..+|+.
T Consensus 254 d------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl 317 (438)
T 2dpy_A 254 D------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQ 317 (438)
T ss_dssp E------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCS
T ss_pred H------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCc
Confidence 1 123599999 999999 888887 9999999999999999887542 1242 566667777
Q ss_pred hHHHhhcCeEEEEcCCeEEEecChhhH
Q 000998 369 PEAYELFDDVILLSEGQIVYQGPRVSV 395 (1194)
Q Consensus 369 ~~~~~~~D~vilL~~G~iv~~G~~~~~ 395 (1194)
. ...+|++++|.+|+++..|+..++
T Consensus 318 ~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 318 Q--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp C--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred c--chhhceEEEEeCcEEEEeCCHHHc
Confidence 6 678999999999999999987665
No 148
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.67 E-value=1e-17 Score=191.99 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=99.5
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHH
Q 000998 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1194)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1194)
+++++|+.+++|++++|+|||||||||||++|+|.+++. +|.|+++|.+ +.. .+.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~--------------~~~------ 214 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIV--------------FKH------ 214 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCC--------------CSS------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccc--------------ccc------
Confidence 799999999999999999999999999999999999876 8999999853 110 000
Q ss_pred HHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 000998 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1194)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 309 (1194)
.+ .. . ..+ .+ |
T Consensus 215 ------~~---~~----------------------------------------------i-------~~~-----~g--g 225 (330)
T 2pt7_A 215 ------HK---NY----------------------------------------------T-------QLF-----FG--G 225 (330)
T ss_dssp ------CS---SE----------------------------------------------E-------EEE-----CB--T
T ss_pred ------ch---hE----------------------------------------------E-------EEE-----eC--C
Confidence 00 00 0 000 01 8
Q ss_pred hhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000998 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1194)
Q Consensus 310 GqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1194)
||+||++||+||..+|+++++||||+. ++.+.|+.+. .+++++++++|..+ +.+.+|++++|.+|..
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~--~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC--SGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH--TTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh--cCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3456666654 24433344445544 7888999999988863
No 149
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.64 E-value=4.1e-16 Score=156.89 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 000998 966 INGLSTEQRKRLTIA------VELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1194)
Q Consensus 966 ~~~LSgGqrqrl~ia------~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~ 1039 (1194)
+..||||||||++|| ++|+.+|++|+|||||+|||+.+...+.+.|+++.+.|.|||+++|++ ++...+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 468999999999886 899999999999999999999999999999999877799999999997 356789999
Q ss_pred EEEc
Q 000998 1040 LFMK 1043 (1194)
Q Consensus 1040 ~~l~ 1043 (1194)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
No 150
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.64 E-value=1.3e-15 Score=175.65 Aligned_cols=77 Identities=27% Similarity=0.335 Sum_probs=65.4
Q ss_pred cCCCCChhhhh------HHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC
Q 000998 303 MLKGISGGQKK------RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1194)
Q Consensus 303 ~~~~LSGGqkq------Rvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 376 (1194)
.+..||||||| |+++|++++.+|++|+|||||+|||+..+..+++.|+++... +.+ |+.++|+ .++.+.+|
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~-vi~~sH~-~~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQ-VILVSHD-EELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSE-EEEEESC-GGGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCE-EEEEECh-HHHHHhCC
Confidence 45679999999 678888999999999999999999999999999999987643 444 5556677 56889999
Q ss_pred eEEEEc
Q 000998 377 DVILLS 382 (1194)
Q Consensus 377 ~vilL~ 382 (1194)
+|++|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
No 151
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.63 E-value=3.8e-17 Score=179.88 Aligned_cols=140 Identities=17% Similarity=0.061 Sum_probs=87.3
Q ss_pred cceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCC
Q 000998 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1194)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1194)
..+++|+|+|+.+++|++++|+||||||||||+++|+|.++ .+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc-------ccCCceEEEeCCc-CccccC
Confidence 34579999999999999999999999999999999999762 22233 1245789999996 577899
Q ss_pred HHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 000998 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1194)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1194)
+.|++.+.......... + ..+ ...+...|+.+ .+..+..+ .
T Consensus 75 ~~~~~~~~~~~~~~~~~-~----------------~~~---------------~~~~~~~L~~l--~~~~~~~~-----~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP-D----------------AFD---------------NDLMHRTLKNI--VEGKTVEV-----P 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG-G----------------GBC---------------HHHHHHHHHHH--HTTCCEEE-----C
T ss_pred HhHhhhhhccCCCCCCc-c----------------ccc---------------HHHHHHHHHHH--HCCCCeec-----c
Confidence 99998765432211100 0 000 01122233322 33334433 4
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHH
Q 000998 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS 340 (1194)
Q Consensus 306 ~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~ 340 (1194)
.+|+||+||+.+ ++++.+|+++++|||...+|..
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 699999999988 5888899999999998888764
No 152
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.63 E-value=4.2e-17 Score=179.61 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=104.7
Q ss_pred EEEeCCcEEEEEccCCCChHHHHhhhc--CC-CCCCeeEEEEEEcCccCChh--cccceeeEeecCCCCCCCCcHHHHHH
Q 000998 850 GAFRPGVLTALVGVSGAGKTTLMDVLA--GR-KTGGIIEGDIYISGYPKRQE--TFARISGYCEQNDIHSPGLTVLESLL 924 (1194)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~--g~-~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~Q~~~~~~~lTv~e~l~ 924 (1194)
+.+++|++++|+||||||||||+++|+ |. .. ..|.+++++...... ...+.+||++|+....+.+++.++..
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 101 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVS 101 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccc
Confidence 378999999999999999999999999 55 33 246677776543221 22345677777654444455544332
Q ss_pred HHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC----
Q 000998 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD---- 1000 (1194)
Q Consensus 925 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD---- 1000 (1194)
..... . ..+... . ....+.++......+..-..+|++++|||||++||
T Consensus 102 ~~~~~----------~---~~~~~~----------~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d 153 (251)
T 2ehv_A 102 SVVGL----------P---SEEKFV----------L-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE 153 (251)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS
T ss_pred ccccc----------c---ccccee----------c-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCC
Confidence 11000 0 000000 0 01234455555444444568999999999999998
Q ss_pred -HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHH---------HHhc-CeEEEEc
Q 000998 1001 -ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDI---------FESF-DELLFMK 1043 (1194)
Q Consensus 1001 -~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~---------~~~~-d~~~~l~ 1043 (1194)
+..+..+.++++.+++.|+|||+++|+++. . ...| |++++|+
T Consensus 154 ~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 154 ERKIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEe
Confidence 677777999999988889999999999763 3 4677 9999996
No 153
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.63 E-value=5.7e-17 Score=179.53 Aligned_cols=132 Identities=16% Similarity=0.257 Sum_probs=96.9
Q ss_pred EEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCee-EEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHH
Q 000998 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII-EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e 921 (1194)
.+|+++| +++|++++|+||||||||||+++|+|... +. +|.|.++|.++ +|++|+...+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i---------~~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPI---------EYVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSC---------CSCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcc---------eeecCCccee-------
Confidence 3778998 89999999999999999999999999754 33 69999998764 2333322100
Q ss_pred HHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000998 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1194)
Q Consensus 922 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1194)
.. . ..+++.. ..| |++||++|..+|++|++|||| |+
T Consensus 75 -------v~---q--------------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------VN---Q--------------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------EE---E--------------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------ee---H--------------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 00 0 0112110 123 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEcc
Q 000998 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1194)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 1044 (1194)
.+...+ ++. +..|.+|++|+|+.+ ....+|+++.|..
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 886544 443 457999999999976 4577899888753
No 154
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=1.3e-17 Score=183.74 Aligned_cols=155 Identities=10% Similarity=-0.008 Sum_probs=97.5
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcH
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 919 (1194)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999853 222222 2356789999985 6678999
Q ss_pred HHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000998 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1194)
Q Consensus 920 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL 999 (1194)
.|++.+......... +.....+.+.+.++.+ .+..+.. +..||+||+||+.+ ++++.+|++++||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876533211111 1111112233444432 2222222 24799999999988 5788899999999999888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000998 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027 (1194)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tvi~~~H~ 1027 (1194)
|.. +.++ .+.+|++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 754 2222 37899999996
No 155
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.62 E-value=6e-17 Score=183.55 Aligned_cols=186 Identities=14% Similarity=0.067 Sum_probs=109.2
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceee-EEEECCccCCCCCCCceEEEEecCCCCCCCCC
Q 000998 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-KITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1194)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G-~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1194)
..++|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|... ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 356899999999999999999999999999999999987653 46 55443221100000000000000000 00
Q ss_pred HHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 000998 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1194)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1194)
+.+++... . ....+....++.+++..++. +. +...
T Consensus 94 ~~~~l~~~--------------~------------------------~~~~~~~~~~~~~l~~~~l~------i~-~~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------I------------------------IENGKFDQWFDELFGNDTFH------LY-DSFA 128 (296)
T ss_dssp GCHHHHHH--------------H------------------------HHHTHHHHHHHHHHSSSCEE------EE-CCCC
T ss_pred hccccccC--------------C------------------------CCHHHHHHHHHHHhccCCEE------EE-CCCC
Confidence 11111100 0 00001112233333322221 11 1113
Q ss_pred CCChhh-hhHHHHHHHHhCCCcEeEEecCCC---C---CCH-HHHHHHHHHHHHHHhccCCeEEEEEecCh--h------
Q 000998 306 GISGGQ-KKRLTTGELLVGPARVLFMDEISN---G---LDS-STTYQIIKYLKHSTRALDGTTVISLLQPA--P------ 369 (1194)
Q Consensus 306 ~LSGGq-kqRvsia~al~~~~~vlllDEpts---g---LD~-~~~~~i~~~l~~~~~~~~~t~ii~~~q~~--~------ 369 (1194)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.++|+ ++|.. .
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHE 206 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC---------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCccccccccc
Confidence 588888 67777 999999999999999999 5 455 66788999999998766555555 55653 3
Q ss_pred --------------HHHhhcCeEEEEcCCeE
Q 000998 370 --------------EAYELFDDVILLSEGQI 386 (1194)
Q Consensus 370 --------------~~~~~~D~vilL~~G~i 386 (1194)
.+.+.||+|++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 156
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.62 E-value=3.8e-18 Score=193.68 Aligned_cols=123 Identities=13% Similarity=0.053 Sum_probs=93.9
Q ss_pred EeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhhcC
Q 000998 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1194)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~ 931 (1194)
+++|+++||+||||||||||+++|+|...+ . +|. +.++||+|++.+++. |++|++.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~-- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHRK-- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTCT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHhc--
Confidence 789999999999999999999999996542 1 121 347999999998888 999998652211
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000998 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1194)
Q Consensus 932 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1194)
..+.....+.+.++++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1111222344667777776 44333322 47999999999999999999999999999999985
No 157
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.62 E-value=5.4e-17 Score=209.74 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=113.6
Q ss_pred ceEEeeeeeEEEeC-------CcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCC
Q 000998 841 RLQLLVNVTGAFRP-------GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH 913 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~-------Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~ 913 (1194)
+..+++||++.+++ |++++|+|||||||||||++| |... + .++..+||||+..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H----------------HHTTTCCEESSEE-
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H----------------HhheeEEeccCcC-
Confidence 35689999999987 999999999999999999999 8643 1 1222349999753
Q ss_pred CCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000998 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1194)
Q Consensus 914 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 993 (1194)
.+||.|++.. +. |+.+.... +.+.+|+|+++ +++|++++.+|+++|||
T Consensus 828 --~l~v~d~I~~----ri--------------------g~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 828 --RLTPIDRVFT----RL--------------------GASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp --EECCCSBEEE----EC--------------------C--------------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred --CCCHHHHHHH----Hc--------------------CCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 4555555421 11 11111100 12457777765 99999999999999999
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEccCcEEE--EeCC
Q 000998 994 EPTSGLDARA-AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELI--YAGP 1053 (1194)
Q Consensus 994 EPTsgLD~~~-~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~--~~g~ 1053 (1194)
|||+|+|+.. ...++.+|+.++++ |+++|++||+++. +...+|++.++. |++. +.|+
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~~--g~~~~~~~~~ 936 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVRL--GHMACMVENE 936 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEEE--EEEEEC----
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceeec--CeEEEEEecC
Confidence 9999999987 46678999999876 9999999999753 445688888874 6776 4454
No 158
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.61 E-value=1.3e-15 Score=185.83 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=66.4
Q ss_pred CCCC-ChhhhhHHHHHHHHhCCC--cEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000998 304 LKGI-SGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1194)
Q Consensus 304 ~~~L-SGGqkqRvsia~al~~~~--~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1194)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ +. +|+.++|... +...+|++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~-~vi~itH~~~-~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TR-QVLVVTHLAQ-IAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HS-EEEEECCCHH-HHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CC-EEEEEecCHH-HHHhCCEEEE
Confidence 4567 999999999999999999 99999999999999999999999999875 34 4555777755 5567999999
Q ss_pred EcCC
Q 000998 381 LSEG 384 (1194)
Q Consensus 381 L~~G 384 (1194)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
No 159
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.61 E-value=6.8e-16 Score=196.98 Aligned_cols=157 Identities=13% Similarity=0.070 Sum_probs=105.9
Q ss_pred ceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHH
Q 000998 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 920 (1194)
...+++||++.+.+|++++|+|||||||||||+++++..-- ...| +|||++....+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq~G------------------~~vpa~~~~~~~---- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQIG------------------CFVPCESAEVSI---- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-HHHT------------------CCBSEEEEEEEC----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-HhcC------------------CccccccccchH----
Confidence 45689999999999999999999999999999999431000 0000 111111000000
Q ss_pred HHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCC
Q 000998 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL--VANPSIVFMDEPTSG 998 (1194)
Q Consensus 921 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL--~~~p~illLDEPTsg 998 (1194)
+++++..+++. +.+ ..++|+++++++.+|++| +.+|+++||||||+|
T Consensus 705 -----------------------~d~i~~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~G 753 (934)
T 3thx_A 705 -----------------------VDCILARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753 (934)
T ss_dssp -----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCS
T ss_pred -----------------------HHHHHHhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 00000001111 111 136888888888888888 999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 999 LDARAAAIV-MRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 999 LD~~~~~~i-~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
+|+.....+ +.+++.+.+ .|.|||++||+. ++.+.+|++..+.+ |++.+.++.
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 999988777 777788876 499999999995 45678999988874 788776654
No 160
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.59 E-value=6.6e-17 Score=185.96 Aligned_cols=176 Identities=14% Similarity=0.176 Sum_probs=122.2
Q ss_pred ceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCC----------hhcccceeeEeecC
Q 000998 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----------QETFARISGYCEQN 910 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~----------~~~~~~~~gyv~Q~ 910 (1194)
+..+|+++ +.+.+|+++||+||||||||||+++|+|...+ ..|.|.+.|.+.. ...+.+.+.++.|.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 45789999 99999999999999999999999999998663 4789999886421 11234567777775
Q ss_pred CCCCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000998 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1194)
Q Consensus 911 ~~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il 990 (1194)
+. ...+.+.-.. ....+.+.....+ .+.+.-...+..||+|| ||+++| +.+|++
T Consensus 135 ~~-----~~~~r~~~~~------------~~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 135 DR-----PALERMKAAF------------TATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp TS-----CHHHHHHHHH------------HHHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC-
T ss_pred CC-----CHHHHHHHHH------------HHHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc-
Confidence 42 1222221000 0000111111101 01000001235799999 899999 688877
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 991 FMDEPTSGLDARAAAIVMRTVRNIVN--TGR-----TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~--~g~-----tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
|+|||+.....+.++++++.+ .|. ||++++||.+ ...+|++++|. +|+++..|++
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~-dG~Ivl~~~l 250 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSIL-DGHIVLTREL 250 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHC-SEEEEBCHHH
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEee-CcEEEEeCCH
Confidence 999999999999999999864 477 9999999987 24689999998 5899988764
No 161
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.58 E-value=2.2e-16 Score=171.49 Aligned_cols=152 Identities=19% Similarity=0.224 Sum_probs=96.1
Q ss_pred EEEeCCcEEEEEccCCCChHHHHhhhcCC--CCC---CeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHH
Q 000998 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTG---GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1194)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~ 924 (1194)
+.+++|++++|+||||||||||+++|+|. .+. +...|.+++++..... .+.+++++|...+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 46899999999999999999999999983 221 1234577777753210 1223444454333322 3444332
Q ss_pred HHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCH-HHHHHHHHHHHHhh-------CCCEEEEeCCC
Q 000998 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST-EQRKRLTIAVELVA-------NPSIVFMDEPT 996 (1194)
Q Consensus 925 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg-Gqrqrl~ia~aL~~-------~p~illLDEPT 996 (1194)
+. ...+. .+++.+..+.+++. +|++|++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 21 01222 23333555555555 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEecCCcH---HHHHhcCeEEEEccC
Q 000998 997 SGLDAR-------A-----AAIVMRTVRNIVN-TGRTIVCTIHQPSI---DIFESFDELLFMKRG 1045 (1194)
Q Consensus 997 sgLD~~-------~-----~~~i~~~l~~l~~-~g~tvi~~~H~~~~---~~~~~~d~~~~l~~g 1045 (1194)
+++|+. . ...+++.|+++++ .|.|||+++|..+. .+...+|++++|.+|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999983 2 2367778887765 49999999995431 255678999999864
No 162
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.58 E-value=2.5e-15 Score=183.56 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=111.2
Q ss_pred eEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHHHHhh
Q 000998 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAG 234 (1194)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 234 (1194)
++.+++|++++|+||||||||||++.++|...+ .|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 679999999999999999999999999998754 232 12445566541 12222210
Q ss_pred hccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhH
Q 000998 235 QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKR 314 (1194)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR 314 (1194)
+ .+. + ++. +...|+....+.. ...|||||+||
T Consensus 330 ~--------------------~g~----~------------------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 S--------------------WGM----D------------------FEE-MERQNLLKIVCAY-----PESAGLEDHLQ 361 (525)
T ss_dssp T--------------------TSC----C------------------HHH-HHHTTSEEECCCC-----GGGSCHHHHHH
T ss_pred H--------------------cCC----C------------------HHH-HHhCCCEEEEEec-----cccCCHHHHHH
Confidence 0 000 0 111 1234555444433 34699999999
Q ss_pred HHHHHHHhCCCcEeEEecCCCCCCHH-----HHHHHHHHHHHHHhccCCeEEEEEecCh----------hHHHhhcCeEE
Q 000998 315 LTTGELLVGPARVLFMDEISNGLDSS-----TTYQIIKYLKHSTRALDGTTVISLLQPA----------PEAYELFDDVI 379 (1194)
Q Consensus 315 vsia~al~~~~~vlllDEptsgLD~~-----~~~~i~~~l~~~~~~~~~t~ii~~~q~~----------~~~~~~~D~vi 379 (1194)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+++ .+.++++ +.|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvil-vsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLF-TNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEE-EEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEE-EECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 99999999988764 3555555 55555 66778999999
Q ss_pred EEcCCe
Q 000998 380 LLSEGQ 385 (1194)
Q Consensus 380 lL~~G~ 385 (1194)
+|.+|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999887
No 163
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.57 E-value=2.4e-15 Score=191.93 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=70.6
Q ss_pred CCCChhhhhHHHHHHHH--hCCCcEeEEecCCCCCCHHHHHHH-HHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000998 305 KGISGGQKKRLTTGELL--VGPARVLFMDEISNGLDSSTTYQI-IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1194)
Q Consensus 305 ~~LSGGqkqRvsia~al--~~~~~vlllDEptsgLD~~~~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL 381 (1194)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ +..++.+.+..+.++ +.++|. .++..++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~v-l~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC-MFATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEE-EEEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEE-EEEcCc-HHHHHHhccccee
Confidence 46899999998898888 999999999999999999999888 566666654334454 446676 5677899999999
Q ss_pred cCCeEEEecChhhH
Q 000998 382 SEGQIVYQGPRVSV 395 (1194)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1194)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999998877654
No 164
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.55 E-value=4.9e-16 Score=197.62 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=97.3
Q ss_pred ceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHH
Q 000998 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 920 (1194)
+..+++|||+.+++|++++|+|||||||||||+++++..... . .|..+... ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q-----~g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--Q-----IGSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--H-----HTCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--h-----cCccccch--hhhhhHH---HHHHHhCChH
Confidence 457899999999999999999999999999999997531100 0 01000000 0011111 1111111111
Q ss_pred HHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000998 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1194)
Q Consensus 921 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD 1000 (1194)
+++ .. +.+.+|+|++|++.|+++ +.+|+++||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 00 124799999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCCcHHHHHhcCe
Q 000998 1001 ARAAAIVM-RTVRNIVN-TGRTIVCTIHQPSIDIFESFDE 1038 (1194)
Q Consensus 1001 ~~~~~~i~-~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~ 1038 (1194)
+.....+. .+++.+++ .|.|||++||+++ +.+.+|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 99888887 77888865 5999999999965 3455554
No 165
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.55 E-value=6.6e-16 Score=193.90 Aligned_cols=129 Identities=21% Similarity=0.141 Sum_probs=96.1
Q ss_pred ceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHH
Q 000998 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 920 (1194)
+..+++|||+. |++++|+|||||||||||++|+|.... ...|.+. + . .+..+|+++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p--a--~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P--A--EEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S--S--SEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e--h--hccceeeHHH---hhccCCHH
Confidence 45789999999 999999999999999999999985320 0123221 1 1 1345777776 34445555
Q ss_pred HHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 000998 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL--VANPSIVFMDEP--- 995 (1194)
Q Consensus 921 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL--~~~p~illLDEP--- 995 (1194)
|++. .++|+|+++++.+|++| +.+|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5431 24799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCc
Q 000998 996 TSGLDARAA-AIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1194)
Q Consensus 996 TsgLD~~~~-~~i~~~l~~l~~~g~tvi~~~H~~~ 1029 (1194)
|++||..+. ..+++.|++ .|.|||++||+++
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 999998875 467777765 5899999999954
No 166
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.54 E-value=5.8e-16 Score=178.05 Aligned_cols=180 Identities=17% Similarity=0.157 Sum_probs=123.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCC----------CCCceEEEEecC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF----------VPPRTSAYVSQQ 217 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~----------~~~~~~~yv~Q~ 217 (1194)
..+|+++ +.|.+|++++|+||||||||||+++|+|...++ .|.|.+.|++..+. ...+.+.+++|.
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 4689999 999999999999999999999999999998876 89999988642110 123567777775
Q ss_pred CCCCCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccc
Q 000998 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1194)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1194)
+. ...+.+.-.... ..+ .+.....| .|.
T Consensus 135 ~~-----~~~~r~~~~~~~----------~~~---------------------------------ae~~~~~~----~~v 162 (347)
T 2obl_A 135 DR-----PALERMKAAFTA----------TTI---------------------------------AEYFRDQG----KNV 162 (347)
T ss_dssp TS-----CHHHHHHHHHHH----------HHH---------------------------------HHHHHTTT----CEE
T ss_pred CC-----CHHHHHHHHHHH----------HHH---------------------------------HHHHHhcc----ccH
Confidence 42 222222110000 000 00000001 010
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCe-----EEEEEecChhHHH
Q 000998 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT-----TVISLLQPAPEAY 372 (1194)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t-----~ii~~~q~~~~~~ 372 (1194)
.+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.+++..+..+++ +|+..+|+.+ .
T Consensus 163 l~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~ 230 (347)
T 2obl_A 163 LLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--D 230 (347)
T ss_dssp EEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--C
T ss_pred HHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--C
Confidence 00001234699999 899999 577776 99999999999999998875312344 5666677776 5
Q ss_pred hhcCeEEEEcCCeEEEecChhhH
Q 000998 373 ELFDDVILLSEGQIVYQGPRVSV 395 (1194)
Q Consensus 373 ~~~D~vilL~~G~iv~~G~~~~~ 395 (1194)
.++|++++|.+|+++..|+..+.
T Consensus 231 ~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 231 PIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHHHHCSEEEEBCHHHHTT
T ss_pred hhhhheEEeeCcEEEEeCCHHHc
Confidence 78999999999999999987765
No 167
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.54 E-value=2.9e-16 Score=177.81 Aligned_cols=158 Identities=15% Similarity=0.050 Sum_probs=85.3
Q ss_pred ccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCC-CCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCC
Q 000998 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGL 917 (1194)
Q Consensus 839 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 917 (1194)
++++.+++++++.| +|+|+||||||||+++|+|. .. +.+| +.++|.+.......+.++|++|.+.....+
T Consensus 8 ~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 8 VHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRL 78 (301)
T ss_dssp ----------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEE
T ss_pred ECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCc
Confidence 45678999999998 99999999999999999996 43 3567 878876653322235579999988888889
Q ss_pred cHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000998 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1194)
Q Consensus 918 Tv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1194)
|+.|+..++..... .+.....++.+.+ ..+.. .+++|||||||+.+||+++ +|++||||+
T Consensus 79 tv~Dt~g~~~~~~~-----~e~~~~l~~~l~~------~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~ 138 (301)
T 2qnr_A 79 TVVDTPGYGDAINC-----RDCFKTIISYIDE------QFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFG 138 (301)
T ss_dssp EEEEEC----------------CTTHHHHHHH------HHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSS
T ss_pred chhhhhhhhhhcCc-----HHHHHHHHHHHHH------HHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcc
Confidence 99998876532210 0000111121111 11222 2479999999999988875 999999998
Q ss_pred C-CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCc
Q 000998 998 G-LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPS 1029 (1194)
Q Consensus 998 g-LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~ 1029 (1194)
+ ||+... +.++++... +.++|++.||..
T Consensus 139 ~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 139 HGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred cCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 5 999863 566666543 788999999864
No 168
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.52 E-value=2.4e-16 Score=169.15 Aligned_cols=144 Identities=14% Similarity=0.095 Sum_probs=104.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCC--CCCCHHHHHHHhhh
Q 000998 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQV--AEMTVRETLDFAGQ 235 (1194)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 235 (1194)
.++|++++|+||||||||||+++|+|.+++ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998742 479999998776 56899988765321
Q ss_pred ccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh----
Q 000998 236 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ---- 311 (1194)
Q Consensus 236 ~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 311 (1194)
.. + . .....+..+++.+++.+..+.. ...+|+||
T Consensus 61 ~~--~-~----------------------------------~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP--D-A----------------------------------FDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SG--G-G----------------------------------BCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Ch--h-h----------------------------------hhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 00 0 0 0012245566777776544433 33589996
Q ss_pred hhHHHHHHHHhCCCcEeEEecCCCC-------CCHHHHHHHHHHHHHHHhccCCeEEEEEe
Q 000998 312 KKRLTTGELLVGPARVLFMDEISNG-------LDSSTTYQIIKYLKHSTRALDGTTVISLL 365 (1194)
Q Consensus 312 kqRvsia~al~~~~~vlllDEptsg-------LD~~~~~~i~~~l~~~~~~~~~t~ii~~~ 365 (1194)
+||+++|++++.+|.++++||||++ ||+....++.+.+++.....+.+++.+.|
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4788999999999999999999999 99999999999888754333445444333
No 169
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.52 E-value=1.7e-15 Score=164.46 Aligned_cols=154 Identities=18% Similarity=0.161 Sum_probs=91.5
Q ss_pred EeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC----ceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHHH
Q 000998 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL----QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1194)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~----~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1194)
+-+++|++++|+||||||||||+++|+|.+.+.. ...|.|.+++... ...+.++++.|...+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~---~~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC---CCHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC---CCHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999654310 1134555555321 001223333343322222 3333332
Q ss_pred HhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 000998 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1194)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1194)
+. ...++++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 21 1122222
Q ss_pred -hhHHHHHHHHh-------CCCcEeEEecCCCCCCHH-------H-----HHHHHHHHHHHHhccCCeEEEEEecChhH-
Q 000998 312 -KKRLTTGELLV-------GPARVLFMDEISNGLDSS-------T-----TYQIIKYLKHSTRALDGTTVISLLQPAPE- 370 (1194)
Q Consensus 312 -kqRvsia~al~-------~~~~vlllDEptsgLD~~-------~-----~~~i~~~l~~~~~~~~~t~ii~~~q~~~~- 370 (1194)
++.+..+++++ .+|+++++||||++||+. . ..++++.|+++++..+ .+|+.++|...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g-~tvi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCC-CeEEEEeecccCc
Confidence 22234444433 489999999999999984 1 2368888888776554 455557774444
Q ss_pred ---HHhhcCeEEEEcCCe
Q 000998 371 ---AYELFDDVILLSEGQ 385 (1194)
Q Consensus 371 ---~~~~~D~vilL~~G~ 385 (1194)
+...+|.++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 888999999998753
No 170
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.52 E-value=1.6e-15 Score=196.05 Aligned_cols=159 Identities=14% Similarity=0.080 Sum_probs=111.1
Q ss_pred eeeeecceEeEeC-------CeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEE-EEecCCC
Q 000998 148 LTILDDLSGIIRP-------SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA-YVSQQDW 219 (1194)
Q Consensus 148 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~-yv~Q~d~ 219 (1194)
..|++|+++.+++ |++++|+|||||||||||++| |.+... ..+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------------------aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------------------AQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------------------HTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------------------hheeEEeccCcC
Confidence 3689999999987 999999999999999999999 876421 1234 9999763
Q ss_pred CCCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccc
Q 000998 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1194)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1194)
.+||.|+|.. + +|+.+...
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555411 0 01110000
Q ss_pred cCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHH-HHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000998 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT-YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1194)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1194)
.....+|++++ ++++|++++.+|++++||||++|+|+... ..++..|+.+.+.. +.+++.++|..+.+..++|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHHhCCcc
Confidence 01124677666 49999999999999999999999999885 44678888876543 445556788888888899999
Q ss_pred EEEcCCeEE--EecChh
Q 000998 379 ILLSEGQIV--YQGPRV 393 (1194)
Q Consensus 379 ilL~~G~iv--~~G~~~ 393 (1194)
.++ +|++. +.|+.+
T Consensus 923 ~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECE 938 (1022)
T ss_dssp SEE-EEEEEEC------
T ss_pred eee-cCeEEEEEecCcc
Confidence 887 58887 455543
No 171
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.52 E-value=7.3e-16 Score=174.14 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=101.5
Q ss_pred CCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cc--cceeeEeecCCCCCCCCcHHHHHH
Q 000998 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDIHSPGLTVLESLL 924 (1194)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~~~~~lTv~e~l~ 924 (1194)
+|++++|+||||||||||+++|+|...+ ..|+|.++|.+.... .+ ++.++|++|++.+.|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999999999999997653 368999999875321 11 345899999998888899999987
Q ss_pred HHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHH
Q 000998 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDEPTSGLDAR 1002 (1194)
Q Consensus 925 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPTsgLD~~ 1002 (1194)
+... +.. + ..+++..|+.+..+ .-++..++||++|||+|+.+|+ +|.|| |+++.
T Consensus 179 ~~~~-~~~-d----------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~--- 234 (304)
T 1rj9_A 179 AMKA-RGY-D----------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ--- 234 (304)
T ss_dssp HHHH-HTC-S----------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT---
T ss_pred HHHh-CCC-C----------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH---
Confidence 6421 100 0 00111222221111 1245566899999999999999 45555 55554
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCC
Q 000998 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQP 1028 (1194)
Q Consensus 1003 ~~~~i~~~l~~l~~~-g~tvi~~~H~~ 1028 (1194)
.+++.++++.+. |.|+|++||+.
T Consensus 235 ---~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 235 ---NGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECTT
T ss_pred ---HHHHHHHHHHHHcCCcEEEEECCc
Confidence 456666666544 89999999974
No 172
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.51 E-value=4.4e-17 Score=174.92 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=110.2
Q ss_pred EeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCC--CCCcHHHHHHHHhhh
Q 000998 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWL 929 (1194)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lTv~e~l~f~~~l 929 (1194)
.++|+++||+||||||||||+++|+|...+ .++|++|++.++ ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 468999999999999999999999986431 368999998776 5689988876531
Q ss_pred cCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------
Q 000998 930 RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ----RKRLTIAVELVANPSIVFMDEPTSG------- 998 (1194)
Q Consensus 930 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGq----rqrl~ia~aL~~~p~illLDEPTsg------- 998 (1194)
..+.... .+.+.++++.+++.+..+. | ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~~~~----~~~~~~~l~~~~~~~~~~~----~-~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAFD----LALYLEHAQALLRGLPVEM----P-VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGBC----HHHHHHHHHHHHTTCCEEE----C-CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhhh----HHHHHHHHHHHHcCCCcCC----C-cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1111111 2345667777776654432 2 24689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 000998 999 LDARAAAIVMRTVRNI-VNTGRTIVCTIHQP 1028 (1194)
Q Consensus 999 LD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~ 1028 (1194)
||+.....+.+.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
No 173
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.51 E-value=9.3e-16 Score=177.15 Aligned_cols=159 Identities=20% Similarity=0.182 Sum_probs=98.4
Q ss_pred eEEEeCCcEEEEEccCCCChHHHHhhhcCCC--CC--CeeEEE-EEEcCccCChhcccceeeEeecCCCCCCCCcHHHHH
Q 000998 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRK--TG--GIIEGD-IYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1194)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~--~~--~~~~G~-i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 923 (1194)
.+.+++|++++|+||||||||||++.|++.. ++ |...|. |+|++.... ..+.+++++|...+.+. ++.+|+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~v~~ni 200 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHI 200 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-HHGGGE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-HHhhCE
Confidence 5789999999999999999999999999854 21 111367 889886431 12345666665543322 333333
Q ss_pred HHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCC
Q 000998 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV-------ANPSIVFMDEPT 996 (1194)
Q Consensus 924 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~-------~~p~illLDEPT 996 (1194)
.+.. . .-|.+|+|++.++++++ .+|++|++||||
T Consensus 201 ~~~~-------------------------------~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 201 YVAR-------------------------------A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp EEEE-------------------------------C--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred EEEe-------------------------------c--------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 2210 0 01456777777777777 689999999999
Q ss_pred CCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEeC
Q 000998 997 SGLDARA------------AAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1194)
Q Consensus 997 sgLD~~~------------~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~g 1052 (1194)
+++|+.. ...+++.|+++++ .|.|||+|+|... ..-..|+...... ||+++.++
T Consensus 242 a~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~ 308 (349)
T 1pzn_A 242 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHS 308 (349)
T ss_dssp TTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTT
T ss_pred HhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeec
Confidence 9999852 3566667777765 4999999999864 2322334444444 45554433
No 174
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.50 E-value=4.4e-14 Score=142.06 Aligned_cols=83 Identities=24% Similarity=0.311 Sum_probs=68.8
Q ss_pred CccCCCCChhhhhHHHHH------HHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh
Q 000998 301 DEMLKGISGGQKKRLTTG------ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1194)
Q Consensus 301 ~~~~~~LSGGqkqRvsia------~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1194)
+..+..|||||||||+|| ++|+.+|++++|||||+|||+.+...+.+.++++.+. +.+ |+.++|+. ++.+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~t-iiivsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQ-VILVSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSE-EEEEESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCE-EEEEEChH-HHHHh
Confidence 344567999999999876 8999999999999999999999999999999987643 444 55566776 67889
Q ss_pred cCeEEEE--cCCeE
Q 000998 375 FDDVILL--SEGQI 386 (1194)
Q Consensus 375 ~D~vilL--~~G~i 386 (1194)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 45643
No 175
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.50 E-value=4.1e-15 Score=187.80 Aligned_cols=155 Identities=13% Similarity=0.021 Sum_probs=103.0
Q ss_pred ceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHH
Q 000998 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 920 (1194)
+..+++|+++. ++|++++|+|||||||||||++|+|....+ . .|..+... ...+++++| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~----q---~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA----Y---IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH----T---TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH----h---cCcccchh--cccceeHHH---HHhhCCHH
Confidence 45689999999 999999999999999999999999852100 0 12111111 133566655 34444554
Q ss_pred HHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000998 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1194)
Q Consensus 921 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD 1000 (1194)
|++..+ .+.+|+|+++ +..+..++.+|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 444210 1246766654 455556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEccCcEEEEe
Q 000998 1001 ARAAAIV-MRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051 (1194)
Q Consensus 1001 ~~~~~~i-~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gG~~~~~ 1051 (1194)
+.....+ +.+++.+.+ .|.+||++||+++ +...+|++..+. +|++.+.
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~-n~~~~~~ 750 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVA-NVHLDAL 750 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEE-EEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceE-EEEEEEE
Confidence 8776665 788888887 4999999999975 345677765555 3555554
No 176
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.50 E-value=5.8e-15 Score=163.40 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=93.1
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHH
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1194)
++|+|+| +++|++++|+|||||||||||++|+|.+++. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 8999999999999999999999999988541 279999998764211 11111111110
Q ss_pred HHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 000998 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1194)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1194)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 011110 012
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000998 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1194)
Q Consensus 309 GGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1194)
|++||++|..+|+++++|||| |..+...+++ . +. .+.+ |++++|... +...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~-vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHL-VFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCE-EEEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCE-EEEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9988665543 2 22 3445 455556654 6788999988864
No 177
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.48 E-value=2.2e-15 Score=165.83 Aligned_cols=71 Identities=17% Similarity=0.086 Sum_probs=49.7
Q ss_pred hhhhHHHHHHHHhCCCcEeEEecCCCCCC-----HHHHHHHHHHHHHHHhccCCeEEEEEecChhHH---------Hhhc
Q 000998 310 GQKKRLTTGELLVGPARVLFMDEISNGLD-----SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA---------YELF 375 (1194)
Q Consensus 310 GqkqRvsia~al~~~~~vlllDEptsgLD-----~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~---------~~~~ 375 (1194)
++..+...+..-..+|+++++||||++|| ...+..+.+.++.+.+ .+ ++|+.++|...++ ..++
T Consensus 121 ~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g-~tii~vtH~~~~~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 121 DNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MG-VTTILTTEAPDPQHGKLSRYGIEEFI 198 (251)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HC-CEEEEEECCC----CCSSSSSCGGGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CC-CeEEEEECCCCCCcccccccChhhEe
Confidence 34444444444457999999999999998 6666678888888764 34 4455577877777 6788
Q ss_pred -CeEEEEc
Q 000998 376 -DDVILLS 382 (1194)
Q Consensus 376 -D~vilL~ 382 (1194)
|+|++|+
T Consensus 199 aD~vi~l~ 206 (251)
T 2ehv_A 199 ARGVIVLD 206 (251)
T ss_dssp CSEEEEEE
T ss_pred eeEEEEEe
Confidence 9999995
No 178
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.48 E-value=3e-16 Score=164.99 Aligned_cols=158 Identities=19% Similarity=0.209 Sum_probs=105.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCC-CCCceEEEEecCCCCCCCCCHHHHHHHhhhccCC
Q 000998 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV 239 (1194)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 239 (1194)
|++++|+||||||||||+++|+|.+. . +| |.++|....+. ..++.++|++|+. ... ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999986 4 78 88888766433 2357889999974 111 1111 01000
Q ss_pred CCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCc-ccccccccCccCCCCChhhhhHHHH-
Q 000998 240 GSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLKGISGGQKKRLTT- 317 (1194)
Q Consensus 240 ~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqkqRvsi- 317 (1194)
+.+ ...+..+|. ....+|||||+++..
T Consensus 67 --------------------------------------------------~~~~~~~~~~v~~-~~~~ls~~er~~~~~l 95 (189)
T 2i3b_A 67 --------------------------------------------------EPPPGKRECRVGQ-YVVDLTSFEQLALPVL 95 (189)
T ss_dssp --------------------------------------------------CCCSSSCCEESSS-SEECHHHHHTTTTTTT
T ss_pred --------------------------------------------------cCCccccccccce-EEEcchHHHHHHHHHH
Confidence 000 001124443 234699999999844
Q ss_pred HH---HHhCCCcEeEEec--CCCCCCHHHHHHHHHHHHHHHhccCCeEEE---EEecChhHHHhhcCeEEEEcCCeEEEe
Q 000998 318 GE---LLVGPARVLFMDE--ISNGLDSSTTYQIIKYLKHSTRALDGTTVI---SLLQPAPEAYELFDDVILLSEGQIVYQ 389 (1194)
Q Consensus 318 a~---al~~~~~vlllDE--ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii---~~~q~~~~~~~~~D~vilL~~G~iv~~ 389 (1194)
++ |+..+|++++||| |+..+|......+.+.++ . ..++|+ ++.|..+ ..+.|+|..+.+|+++.-
T Consensus 96 ~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 96 RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 44 5889999999999 898999987666666554 2 234443 3336543 356688888888998864
Q ss_pred c
Q 000998 390 G 390 (1194)
Q Consensus 390 G 390 (1194)
.
T Consensus 169 ~ 169 (189)
T 2i3b_A 169 T 169 (189)
T ss_dssp C
T ss_pred C
Confidence 3
No 179
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.48 E-value=2.6e-15 Score=173.48 Aligned_cols=169 Identities=21% Similarity=0.200 Sum_probs=99.5
Q ss_pred eeeecc-eEeEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCC-ceeeE-EEECCccCCCCCCCceEEEEecCCCCCCC
Q 000998 149 TILDDL-SGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHL-QVSGK-ITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1194)
Q Consensus 149 ~iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l--~~~~-~~~G~-i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1194)
+.|+++ .|.+++|++++|+||||||||||++.|++.. ++.. ...|. |++++.+. ..++.+++++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~---~~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC---CCHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC---CCHHHHHHHHHHcCCCHH
Confidence 456665 6899999999999999999999999999986 3320 01367 77777543 112345666665543333
Q ss_pred CCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCcc
Q 000998 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1194)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1194)
++.||+.+....
T Consensus 195 -~v~~ni~~~~~~------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 -EVLKHIYVARAF------------------------------------------------------------------- 206 (349)
T ss_dssp -HHGGGEEEEECC-------------------------------------------------------------------
T ss_pred -HHhhCEEEEecC-------------------------------------------------------------------
Confidence 555554332100
Q ss_pred CCCCChhhhhHHHHHHHHh-------CCCcEeEEecCCCCCCHHH------------HHHHHHHHHHHHhccCCeEEEEE
Q 000998 304 LKGISGGQKKRLTTGELLV-------GPARVLFMDEISNGLDSST------------TYQIIKYLKHSTRALDGTTVISL 364 (1194)
Q Consensus 304 ~~~LSGGqkqRvsia~al~-------~~~~vlllDEptsgLD~~~------------~~~i~~~l~~~~~~~~~t~ii~~ 364 (1194)
-|++|++++.++++++ .+|+++++||||++||+.. ..++++.|+.+++..+ ++|+.+
T Consensus 207 ---~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~-~tvii~ 282 (349)
T 1pzn_A 207 ---NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVT 282 (349)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEE
T ss_pred ---ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEE
Confidence 1233444444444444 7899999999999999852 3566677777776544 455556
Q ss_pred ecChhHHHhhcCeEEEEcCCeEEEecCh
Q 000998 365 LQPAPEAYELFDDVILLSEGQIVYQGPR 392 (1194)
Q Consensus 365 ~q~~~~~~~~~D~vilL~~G~iv~~G~~ 392 (1194)
.|........|++......|+++.++..
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EECC---------------CCCCCTTCS
T ss_pred cccccccccccCCccccCCcceEeecCc
Confidence 6766666556667777778887766553
No 180
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.47 E-value=1.3e-14 Score=157.47 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=105.4
Q ss_pred EEeeeeeE-EEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhccc---ceeeEeecCCCCCCCCc
Q 000998 843 QLLVNVTG-AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA---RISGYCEQNDIHSPGLT 918 (1194)
Q Consensus 843 ~iL~~vs~-~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~---~~~gyv~Q~~~~~~~lT 918 (1194)
..|+++.+ .+++|++++|+||||||||||++.|++... ...|.+.+.+.+....... +..++.+|+.... .+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 34667774 899999999999999999999999997532 1234554444332211111 1122222211000 000
Q ss_pred HHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCC
Q 000998 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDEPT 996 (1194)
Q Consensus 919 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPT 996 (1194)
+. +.....++ .... ....|.++.++...+.....+|+ +|++||||
T Consensus 87 ~~------------------------~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 II------------------------DALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp EE------------------------ECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred EE------------------------eccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 00 00000000 0000 12359999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCc-------HHHHHhcCeEEEEcc
Q 000998 997 SGL--DARAAAIVMRTVRNIVN-TGRTIVCTIHQPS-------IDIFESFDELLFMKR 1044 (1194)
Q Consensus 997 sgL--D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~-------~~~~~~~d~~~~l~~ 1044 (1194)
+++ |+.....+++.|+++++ .|.|||+++|+.. ..+...+|++++|.+
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 888 99889999999999865 5999999999972 136677999999975
No 181
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.47 E-value=4.1e-14 Score=158.73 Aligned_cols=151 Identities=22% Similarity=0.198 Sum_probs=101.7
Q ss_pred EEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhhc
Q 000998 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1194)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr 930 (1194)
.+++|++++|+||||||||||++.+++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 478999999999999999999999997432 2433 23443211 2346677665432 11212221 111
Q ss_pred CCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HH
Q 000998 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS--GLDARA---AA 1005 (1194)
Q Consensus 931 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs--gLD~~~---~~ 1005 (1194)
. .... ...+++++.+.+.+..+.. +..||+||++++ ++++.+|++|++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1111 2245677788777665443 357999998765 68889999999999999 999744 47
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCc
Q 000998 1006 IVMRTVRNIV-NTGRTIVCTIHQPS 1029 (1194)
Q Consensus 1006 ~i~~~l~~l~-~~g~tvi~~~H~~~ 1029 (1194)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888999886 45999999999864
No 182
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.46 E-value=5.1e-14 Score=179.23 Aligned_cols=81 Identities=10% Similarity=0.091 Sum_probs=59.5
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHH-HHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE-Ec
Q 000998 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQII-KYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL-LS 382 (1194)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~-~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil-L~ 382 (1194)
.++|+|++|++.++++ +.+|+++||||||+|||+.....+. ..++.+.+..+.+ ++.++|.. ++.+++|+.-- +.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~t-vl~vTH~~-el~~l~~~~~~~v~ 810 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL-TLFVTHYP-PVCELEKNYSHQVG 810 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCE-EEEECSCG-GGGGHHHHTTTTEE
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEeCcH-HHHHHHhhcccceE
Confidence 4689999999999998 8999999999999999999999987 6677665433444 55566764 44566665421 34
Q ss_pred CCeEEE
Q 000998 383 EGQIVY 388 (1194)
Q Consensus 383 ~G~iv~ 388 (1194)
++++.+
T Consensus 811 n~~~~~ 816 (918)
T 3thx_B 811 NYHMGF 816 (918)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444443
No 183
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.46 E-value=1.2e-14 Score=182.63 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=94.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~-~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1194)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. + ..+..++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4678999998 99999999999999999999999752 22 34431 0 01234666666 3455555
Q ss_pred HHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 000998 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1194)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1194)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55442 25
Q ss_pred CChhhhhHHHHHHHH--hCCCcEeEEecC---CCCCCHHHH-HHHHHHHHHHHhccCCeEEEEEecChhHHHhhc
Q 000998 307 ISGGQKKRLTTGELL--VGPARVLFMDEI---SNGLDSSTT-YQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1194)
Q Consensus 307 LSGGqkqRvsia~al--~~~~~vlllDEp---tsgLD~~~~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1194)
+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+++.|++ .+.+ ++.++|..+. .+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~-vl~~TH~~~l-~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAY-TLFATHYFEL-TALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCE-EEEECCCHHH-HTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCE-EEEEeCCHHH-HHhh
Confidence 899999999999999 999999999999 999998875 578888875 2344 4446676544 3444
No 184
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.45 E-value=5.4e-16 Score=163.01 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=100.5
Q ss_pred CcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh-hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCC
Q 000998 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933 (1194)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~ 933 (1194)
|++++|+||||||||||+++|+|... .+| |.++|....+ ...++.+||++|+.. ... +++ +.+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l---~~~~~~- 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPL---SRVGLE- 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEE---EECCCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehh---hccccc-
Confidence 78999999999999999999999654 247 7788876532 235678899999751 111 111 111100
Q ss_pred cCcHHHHHHHHHHHHHHcCCCc-ccCCcccCCCCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 000998 934 EIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRL-TIAV---ELVANPSIVFMDE--PTSGLDARAAAI 1006 (1194)
Q Consensus 934 ~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl-~ia~---aL~~~p~illLDE--PTsgLD~~~~~~ 1006 (1194)
..+ ..+..++.. ...+|+|||+++ ++++ |+..+|+||+||| ||..+|......
T Consensus 68 -------------------~~~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 68 -------------------PPPGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp -------------------CCSSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred -------------------CCccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 000 011122322 235999999888 4454 5789999999999 899999875544
Q ss_pred HHHHHHHHHhCCCEEEE----EecCCcHHHHHhcCeEEEEccCcEEEEeCCC
Q 000998 1007 VMRTVRNIVNTGRTIVC----TIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1194)
Q Consensus 1007 i~~~l~~l~~~g~tvi~----~~H~~~~~~~~~~d~~~~l~~gG~~~~~g~~ 1054 (1194)
+ +++.+...++|+ ++|+.+. ...|++..+. +|+++...+-
T Consensus 128 l----~~~l~~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~~ 171 (189)
T 2i3b_A 128 V----RQTLSTPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTKE 171 (189)
T ss_dssp H----HHHHHCSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCSS
T ss_pred H----HHHHhCCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeChH
Confidence 4 444444555553 2388642 2346666554 5787776543
No 185
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.45 E-value=2.8e-13 Score=161.51 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=63.9
Q ss_pred CCCChhhhhHHHHHHHHh----CCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000998 305 KGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1194)
Q Consensus 305 ~~LSGGqkqRvsia~al~----~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vil 380 (1194)
..||||||||++||++|+ .+|++++||||+++||+.....+.+.|+++.. .++++++++|. .+....+|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 359999999999999999 68999999999999999999999999998743 24455556666 567889999999
Q ss_pred Ec
Q 000998 381 LS 382 (1194)
Q Consensus 381 L~ 382 (1194)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 186
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.45 E-value=1.8e-14 Score=166.13 Aligned_cols=127 Identities=19% Similarity=0.252 Sum_probs=85.8
Q ss_pred EEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhhc
Q 000998 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1194)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr 930 (1194)
...+|++++|+|||||||||||++|+|..... ..|.|...+.+... ......+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccc---------------
Confidence 56899999999999999999999999965410 13555443333211 11122234444322111
Q ss_pred CCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000998 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010 (1194)
Q Consensus 931 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 1010 (1194)
.++..+ +||++|..+|++|++|||| |..+. +.
T Consensus 182 -------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~----~~ 213 (356)
T 3jvv_A 182 -------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETI----RL 213 (356)
T ss_dssp -------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHH----HH
T ss_pred -------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHH----HH
Confidence 122222 8999999999999999999 66554 34
Q ss_pred HHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEcc
Q 000998 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1194)
Q Consensus 1011 l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 1044 (1194)
+.+++.+|+|||+|+|+.+. ...+||++.|..
T Consensus 214 ~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~ 245 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSC
T ss_pred HHHHHhcCCEEEEEEccChH--HHHHHHHhhhcC
Confidence 44456679999999999873 377899998864
No 187
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.44 E-value=4e-15 Score=168.43 Aligned_cols=155 Identities=13% Similarity=0.144 Sum_probs=79.8
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcC-cCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR-LGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~-l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1194)
+.+++|+++.| +|+||||||||||++.|+|. +.+. +| |.++|.++......+.++|++|.+.....+||
T Consensus 11 ~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 11 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp -------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEE
T ss_pred EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 46999999998 99999999999999999996 5443 78 88888765432223457999998877888999
Q ss_pred HHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 000998 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1194)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1194)
.||..++..... ..+++ ..++.+.+. .+ ...++
T Consensus 81 ~Dt~g~~~~~~~-~e~~~-----------------------------------~l~~~l~~~------~~-----~~~~~ 113 (301)
T 2qnr_A 81 VDTPGYGDAINC-RDCFK-----------------------------------TIISYIDEQ------FE-----RYLHD 113 (301)
T ss_dssp EEEC------------CT-----------------------------------THHHHHHHH------HH-----HHHHH
T ss_pred hhhhhhhhhcCc-HHHHH-----------------------------------HHHHHHHHH------HH-----HHHHH
Confidence 999877432110 00000 011111111 11 23356
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEecCCCC-CCHHHHHHHHHHHHHHHhccCCeEEEEEecCh
Q 000998 307 ISGGQKKRLTTGELLVGPARVLFMDEISNG-LDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368 (1194)
Q Consensus 307 LSGGqkqRvsia~al~~~~~vlllDEptsg-LD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~ 368 (1194)
+|||||||+.+||+++ ++++||||++ ||+... +.++.+... .+.+++...|+.
T Consensus 114 ~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~-~~iilV~~K~Dl 167 (301)
T 2qnr_A 114 ESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNK-VNIVPVIAKADT 167 (301)
T ss_dssp HTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTT-SCEEEEECCGGG
T ss_pred hCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhc-CCEEEEEEeCCC
Confidence 9999999999998885 9999999985 999873 455554332 234555455554
No 188
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.44 E-value=3.2e-15 Score=184.92 Aligned_cols=166 Identities=19% Similarity=0.170 Sum_probs=108.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCC------CCCCCceEEEEecCCCCCCCCCHHHHHHHhhhcc
Q 000998 164 TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK------EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQ 237 (1194)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~------~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 237 (1194)
++|+|||||||||||++|+|.+.| ..+|.|+++|.++. ....++.++|++|++.+++.+||+|++.++....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P--~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP--RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC--CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999755 13899999998742 1234578999999999999999999998753221
Q ss_pred CCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHH
Q 000998 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317 (1194)
Q Consensus 238 ~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsi 317 (1194)
+... .++| ++++.+
T Consensus 126 ~~~~---------------------------------------------------------------~~~s---~~~i~l 139 (608)
T 3szr_A 126 AGEG---------------------------------------------------------------MGIS---HELITL 139 (608)
T ss_dssp HCSS---------------------------------------------------------------SCCC---SCCEEE
T ss_pred cCCc---------------------------------------------------------------cccc---hHHHHH
Confidence 0000 0011 112222
Q ss_pred HHHHhCCCcEeEEecC------CCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh----HHHhh--------cCeEE
Q 000998 318 GELLVGPARVLFMDEI------SNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP----EAYEL--------FDDVI 379 (1194)
Q Consensus 318 a~al~~~~~vlllDEp------tsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~----~~~~~--------~D~vi 379 (1194)
+.+....|+++++||| |+|||+....++.+.++.+.....+.+++.++|+.+ ++..+ ...|+
T Consensus 140 ~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~ 219 (608)
T 3szr_A 140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIG 219 (608)
T ss_dssp EEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEE
T ss_pred HhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEE
Confidence 2223357999999999 999999999999999998755444556666666654 22222 23478
Q ss_pred EEcCCeEEEecChhhHHH
Q 000998 380 LLSEGQIVYQGPRVSVLD 397 (1194)
Q Consensus 380 lL~~G~iv~~G~~~~~~~ 397 (1194)
|+..+..+..|+.+++.+
T Consensus 220 VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 220 ILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEECGGGSSSSSTTCCCC
T ss_pred EecchhhcCcccHHHHHH
Confidence 888888887777655543
No 189
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.44 E-value=7.1e-15 Score=166.05 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=101.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---------CceEEEEecCCCCCCCCCHHHHH
Q 000998 160 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---------PRTSAYVSQQDWQVAEMTVRETL 230 (1194)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 230 (1194)
+|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... ++.++|++|++..+|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999875 8999999987643321 23589999998888889999999
Q ss_pred HHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChh
Q 000998 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310 (1194)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 310 (1194)
.++.. .+. +. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~-~~~----d~--------------------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKA-RGY----DL--------------------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHH-HTC----SE--------------------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHh-CCC----CE--------------------------------------EEecCCCCCCchH--------HHHHHH
Confidence 76421 000 00 0011123222111 114555
Q ss_pred hhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecC
Q 000998 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367 (1194)
Q Consensus 311 qkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~ 367 (1194)
+|||++|||+++.+|+.++| +||+.+..++++.++.+.+..+.+.|+ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 68999999999999995444 455555566667777665544555555 5554
No 190
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.40 E-value=3.8e-14 Score=175.32 Aligned_cols=136 Identities=13% Similarity=0.162 Sum_probs=93.3
Q ss_pred EEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCC------hhcccceeeEeecCCCCCCCCcHHHHHHHHhhhcC
Q 000998 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR------QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1194)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~ 931 (1194)
+||+|||||||||||++|+|...+ ..+|.|.++|.++. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998642 14899999998741 13467789999999999999999999976432110
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHH
Q 000998 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP------TSGLDARAAA 1005 (1194)
Q Consensus 932 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP------TsgLD~~~~~ 1005 (1194)
... .++| ++++.++++...+|+++++||| |+|||+....
T Consensus 127 ---------------------~~~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 ---------------------GEG-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp ---------------------CSS-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred ---------------------CCc-----------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 000 0011 0112222223458999999999 9999999999
Q ss_pred HHHHHHHHHHhC--CCEEEEEecCCc
Q 000998 1006 IVMRTVRNIVNT--GRTIVCTIHQPS 1029 (1194)
Q Consensus 1006 ~i~~~l~~l~~~--g~tvi~~~H~~~ 1029 (1194)
.+.++++++..+ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 678889999876
No 191
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.39 E-value=9.4e-13 Score=142.81 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=62.8
Q ss_pred CCChhhhhHHHHHHHHhCCCc--EeEEecCCCCC--CHHHHHHHHHHHHHHHhccCCeEEEEEecCh--------hHHHh
Q 000998 306 GISGGQKKRLTTGELLVGPAR--VLFMDEISNGL--DSSTTYQIIKYLKHSTRALDGTTVISLLQPA--------PEAYE 373 (1194)
Q Consensus 306 ~LSGGqkqRvsia~al~~~~~--vlllDEptsgL--D~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~--------~~~~~ 373 (1194)
..|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+|+.++|.. +.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhe
Confidence 358999988888777778999 99999999888 9999999999999987654 45566677776 55888
Q ss_pred hcCeEEEEcCC
Q 000998 374 LFDDVILLSEG 384 (1194)
Q Consensus 374 ~~D~vilL~~G 384 (1194)
++|+|++|+..
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 99999999764
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=1.5e-14 Score=169.85 Aligned_cols=153 Identities=13% Similarity=0.075 Sum_probs=90.5
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcH
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 919 (1194)
+++.+++|+||.| +|+|+||||||||+++|+|........|.+.+++.+ ....+.++|++|++.+.+.+|+
T Consensus 22 ~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 22 YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEEE
T ss_pred CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCcccceee
Confidence 4456899999998 999999999999999999975421112222222211 1123568999999888888999
Q ss_pred HHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC---EEEEeCCC
Q 000998 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS---IVFMDEPT 996 (1194)
Q Consensus 920 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~---illLDEPT 996 (1194)
.|++.|+..... .. ....+.+.+ + ..++.+.+||++|||+++.+|+ +|++||||
T Consensus 93 ~Dt~g~~~~~~~------~~---~~~~i~~~i------~--------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt 149 (418)
T 2qag_C 93 VDTPGFGDAVDN------SN---CWQPVIDYI------D--------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS 149 (418)
T ss_dssp EECC--------------------CHHHHHHH------H--------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-
T ss_pred eechhhhhhccc------hh---hHHHHHHHH------H--------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCc
Confidence 999877543210 00 011111111 0 1356677889999999999999 99999999
Q ss_pred -CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000998 997 -SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1194)
Q Consensus 997 -sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 1029 (1194)
.|||+... +.++.+. .+.+||+++|..+
T Consensus 150 ~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 150 GHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred ccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 69998763 4445554 3788888888643
No 193
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.38 E-value=1e-12 Score=135.60 Aligned_cols=75 Identities=12% Similarity=0.189 Sum_probs=65.5
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 000998 966 INGLSTEQRKRLTIAVELVA----NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF 1041 (1194)
Q Consensus 966 ~~~LSgGqrqrl~ia~aL~~----~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~ 1041 (1194)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|+. .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35799999999999999974 4699999999999999999999999999864 57899999985 46788999986
Q ss_pred Ec
Q 000998 1042 MK 1043 (1194)
Q Consensus 1042 l~ 1043 (1194)
+.
T Consensus 139 v~ 140 (173)
T 3kta_B 139 VS 140 (173)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 194
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.38 E-value=1e-13 Score=175.10 Aligned_cols=157 Identities=11% Similarity=0.028 Sum_probs=101.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1194)
..+++|+++. ++|++++|+|||||||||||++|+|..-.. ..| ..+.. ....++++.| +++.+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 4589999999 999999999999999999999999964210 012 11100 0123455544 34445555
Q ss_pred HHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000998 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1194)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1194)
|++... ...+
T Consensus 661 d~l~~~----------------------------------------------------------------------~stf 670 (800)
T 1wb9_A 661 DDLASG----------------------------------------------------------------------RSTF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh----------------------------------------------------------------------hhhh
Confidence 554221 1135
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHH-HHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000998 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI-IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1194)
Q Consensus 308 SGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~i 386 (1194)
|+|+++ ++.+...+.+|++++||||++|+|+.....+ +..++.+.+..+.+ ++.++|..+ ...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~-vl~~TH~~e-l~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKAL-TLFATHYFE-LTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCE-EEEECSCGG-GGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCe-EEEEeCCHH-HHHHhhhhhceEEEEE
Confidence 666654 4444456899999999999999999877775 67777776533444 445667654 4568898877888888
Q ss_pred EEecC
Q 000998 387 VYQGP 391 (1194)
Q Consensus 387 v~~G~ 391 (1194)
.+...
T Consensus 748 ~~~~~ 752 (800)
T 1wb9_A 748 DALEH 752 (800)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 76543
No 195
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=3.1e-14 Score=166.23 Aligned_cols=175 Identities=19% Similarity=0.175 Sum_probs=111.4
Q ss_pred cceEEeeeeeEEEeCCcE--EEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCC
Q 000998 840 DRLQLLVNVTGAFRPGVL--TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGL 917 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 917 (1194)
+..+ |++||+++++|++ +||+||||||||||+++|+|..- .|.. +... .....++.++|++|++.+++.+
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHT--QPGVQLQSNTYDLQESNVRLKL 97 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEE
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCC--CccceEeeEEEEeecCcccccc
Confidence 3345 8999999999999 99999999999999999999742 2211 1111 1112345789999999888889
Q ss_pred cHHHHHHHHhhhcCCCcC-cH---HHHHHHHHHHHHHc-CCC----cccCCc----cc--CCCCCCCCHHHHHHHHHHHH
Q 000998 918 TVLESLLFSAWLRLPSEI-EL---ETQRAFVEEVMELV-ELT----SLSGAL----IG--LPGINGLSTEQRKRLTIAVE 982 (1194)
Q Consensus 918 Tv~e~l~f~~~lr~~~~~-~~---~~~~~~v~~~l~~l-~l~----~~~~~~----~~--~~~~~~LSgGqrqrl~ia~a 982 (1194)
||.|++.|+.... ... .. .......++.+... ++. ...|.. +. .+...+|+-.+ +.|+++
T Consensus 98 tv~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~ 172 (427)
T 2qag_B 98 TIVSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKK 172 (427)
T ss_dssp EEEEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHH
T ss_pred chhhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHH
Confidence 9999987653210 000 00 01122334445443 332 122221 11 12223577766 789999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 000998 983 LVANPSIVFMDEPTSGLDARAAAIVMRTVRN-IVNTGRTIVCTIHQ 1027 (1194)
Q Consensus 983 L~~~p~illLDEPTsgLD~~~~~~i~~~l~~-l~~~g~tvi~~~H~ 1027 (1194)
|..+++||++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 173 L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 173 LDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp TCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999999999986 77779999988764
No 196
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.37 E-value=8.1e-13 Score=148.15 Aligned_cols=153 Identities=15% Similarity=0.180 Sum_probs=98.8
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhc
Q 000998 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236 (1194)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 236 (1194)
-+++|++++|+||||||||||++.|++.+. .|.+ +.|.+.. ....+.|+..++.. ..+.+.+. ..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---AL 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCCH---HHHHHHHH---HH
Confidence 589999999999999999999999998653 4555 3343321 13467888766521 01111110 00
Q ss_pred cCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHH
Q 000998 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316 (1194)
Q Consensus 237 ~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvs 316 (1194)
+.. ......+.+++.+++.+..+.. +..+|+||++++
T Consensus 91 --------------------g~~-----------------~~~~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i- 127 (279)
T 1nlf_A 91 --------------------GAH-----------------LSAEERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL- 127 (279)
T ss_dssp --------------------HTT-----------------SCHHHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH-
T ss_pred --------------------Hhh-----------------cChhhhhhccCceEEeecCCCC-----cccCCHHHHHHH-
Confidence 000 0011245567777777654433 346999998876
Q ss_pred HHHHHhCCCcEeEEecCCC--CCCHHHH---HHHHHHHHHHHhccCCeEEEEEecChhH
Q 000998 317 TGELLVGPARVLFMDEISN--GLDSSTT---YQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1194)
Q Consensus 317 ia~al~~~~~vlllDEpts--gLD~~~~---~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1194)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.+ |+.++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t-vi~i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE-EEEEecCCCc
Confidence 57888999999999999 9998544 78889999887655555 5556666544
No 197
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.34 E-value=1.2e-12 Score=159.68 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=69.6
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEc
Q 000998 967 NGL-STEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1194)
Q Consensus 967 ~~L-SgGqrqrl~ia~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 1043 (1194)
..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||+|||++. +...+|++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 467 999999999999999999 99999999999999999999999999987 899999999965 556799999996
Q ss_pred c
Q 000998 1044 R 1044 (1194)
Q Consensus 1044 ~ 1044 (1194)
+
T Consensus 472 ~ 472 (517)
T 4ad8_A 472 K 472 (517)
T ss_dssp C
T ss_pred c
Confidence 4
No 198
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.34 E-value=3.2e-14 Score=153.17 Aligned_cols=126 Identities=20% Similarity=0.153 Sum_probs=86.9
Q ss_pred EEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcH----HHHHHHH
Q 000998 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV----LESLLFS 926 (1194)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv----~e~l~f~ 926 (1194)
..++|++++|+||||||||||+++|+|..++....|.|.+++.+.... .++.++|++|++..++.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 457999999999999999999999999765213689999998765432 24567999997654444443 2222211
Q ss_pred hhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 000998 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1194)
Q Consensus 927 ~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~ 1006 (1194)
.. . .+.| +++ +.+++..++++||| ||+.++..
T Consensus 91 ~~-------------------------------~------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 91 GN-------------------------------Y------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp TE-------------------------------E------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred hc-------------------------------c------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 10 0 0111 111 34455568999999 99999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCc
Q 000998 1007 VMRTVRNIVNTGRTIVCTIHQPS 1029 (1194)
Q Consensus 1007 i~~~l~~l~~~g~tvi~~~H~~~ 1029 (1194)
+.+.+. .+.||++++|+++
T Consensus 123 i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHCT----TCEEEEEECSSHH
T ss_pred HHHHcc----CCEEEEEECCCHH
Confidence 998876 5899999999865
No 199
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.34 E-value=2.4e-14 Score=152.98 Aligned_cols=166 Identities=15% Similarity=0.103 Sum_probs=88.7
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCC---CCeeEEEEEEcCcc-C-ChhcccceeeEeecCCCCCCCC-
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYP-K-RQETFARISGYCEQNDIHSPGL- 917 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~~-~-~~~~~~~~~gyv~Q~~~~~~~l- 917 (1194)
+|++ +.+.+|..++|+|+||||||||++.|+|... ..+..|.+.+.+.- . ....+....|+..+. .+..
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~ 91 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE---VPEEM 91 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC---------CC
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccc---cCHHH
Confidence 4555 7789999999999999999999999999651 01334544321110 0 000000111111100 0000
Q ss_pred --cHHHHHHHHhhh-c----------CCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHH-HHHHHHH
Q 000998 918 --TVLESLLFSAWL-R----------LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR-LTIAVEL 983 (1194)
Q Consensus 918 --Tv~e~l~f~~~l-r----------~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqr-l~ia~aL 983 (1194)
..+..+...... + ....... ....+.+.++..++..+ .++. ....+|+||||| +..++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREA 165 (210)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHH
Confidence 011111111100 0 0001111 11223444555554322 1111 124689999999 8999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 000998 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020 (1194)
Q Consensus 984 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~t 1020 (1194)
+.+|.++++|||||++|......+++.|.++..+|.|
T Consensus 166 ~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999998765544
No 200
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.33 E-value=4.7e-12 Score=136.18 Aligned_cols=153 Identities=19% Similarity=0.144 Sum_probs=97.1
Q ss_pred Eeeeee-EEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHH
Q 000998 844 LLVNVT-GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLES 922 (1194)
Q Consensus 844 iL~~vs-~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 922 (1194)
.|+++. +.+++|++++|+||||||||||++.|++ ..+ .+.++++.. +.. +...+.+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~-----------------~~~-~~~~~~~~ 65 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTE-----------------GGF-SPERLVQM 65 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESS-----------------CCC-CHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECC-----------------CCC-CHHHHHHH
Confidence 344554 4789999999999999999999999998 221 233444432 111 00011111
Q ss_pred HHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHH--HHHHHHHHHHHhhC-CCEEEEeCCCCCC
Q 000998 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE--QRKRLTIAVELVAN-PSIVFMDEPTSGL 999 (1194)
Q Consensus 923 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgG--qrqrl~ia~aL~~~-p~illLDEPTsgL 999 (1194)
.. . . .... +++++.+.+ ...|++ +++++..+++++.+ |+++++||||+++
T Consensus 66 ~~---~--~--~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 66 AE---T--R--GLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HH---T--T--TCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HH---h--c--CCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 10 0 0 0111 122222211 123333 46788899999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCcH------------HHHHhcCeEEEEccC
Q 000998 1000 DARA--------AAIVMRTVRNIVNT-GRTIVCTIHQPSI------------DIFESFDELLFMKRG 1045 (1194)
Q Consensus 1000 D~~~--------~~~i~~~l~~l~~~-g~tvi~~~H~~~~------------~~~~~~d~~~~l~~g 1045 (1194)
|+.. ...+++.|++++++ |.|||+++|.... .+...+|.+++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9732 34566678888654 9999999997541 355679999999754
No 201
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.31 E-value=2e-13 Score=146.91 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=97.8
Q ss_pred EeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCH----HHHHH
Q 000998 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV----RETLD 231 (1194)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 231 (1194)
-..++|++++|+||||||||||+++|+|.+++. ...|.|.+.+.+.... .++.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 357899999999999999999999999998752 4689999988765432 23467899997655544444 22221
Q ss_pred HhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 000998 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1194)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1194)
+. |+ +.|-.
T Consensus 89 ~~------------------------------------------------------------------~~-----~yg~~ 97 (219)
T 1s96_A 89 VF------------------------------------------------------------------GN-----YYGTS 97 (219)
T ss_dssp ET------------------------------------------------------------------TE-----EEEEE
T ss_pred HH------------------------------------------------------------------hc-----cCCCC
Confidence 11 10 11111
Q ss_pred hhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEecC
Q 000998 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1194)
Q Consensus 312 kqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G~iv~~G~ 391 (1194)
+++ .+.++..+++++|| ||+.++.++.+.+. .+.+|+.+.|...++.. |+ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 221 23344456999999 99999999998775 25667767777776655 43 6777 677
Q ss_pred hhhHHHHH
Q 000998 392 RVSVLDFF 399 (1194)
Q Consensus 392 ~~~~~~~F 399 (1194)
.+++..-+
T Consensus 155 ~e~i~~rl 162 (219)
T 1s96_A 155 EEVIAKRM 162 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776544
No 202
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.29 E-value=7.4e-13 Score=152.62 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=43.5
Q ss_pred HHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000998 316 TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1194)
Q Consensus 316 sia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~G 384 (1194)
+||+||..+|+++++|||+ |..+...+.+. +. .|.+ +++++|..+.+ ..+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~----~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTA----AE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHH----HH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHH----Hh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 8999999999999999999 76664444433 33 3455 55566666655 889999998654
No 203
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.28 E-value=6.6e-15 Score=171.74 Aligned_cols=164 Identities=16% Similarity=0.062 Sum_probs=95.9
Q ss_pred eeecceEeEeC--CeEEEEEcCCCCcHHHHHHHHhcCcCCCCcee----eEEEEC----CccCCCCCCC--ceEEEEecC
Q 000998 150 ILDDLSGIIRP--SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVS----GKITYN----GHGFKEFVPP--RTSAYVSQQ 217 (1194)
Q Consensus 150 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~----G~i~~~----G~~~~~~~~~--~~~~yv~Q~ 217 (1194)
+.+.|++.+++ |+.++|+||||||||||+++|+|.+.+. + |+|.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 46789999999 9999999999999999999999998774 6 766653 2221 00000 112222221
Q ss_pred CCCCCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccc
Q 000998 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1194)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1194)
... ...|+.|||.|. ..+..++
T Consensus 233 ~~~-~~~t~~~nl~~~---------------------------------------------------------~~~~~~~ 254 (365)
T 1lw7_A 233 YID-YAVRHSHKIAFI---------------------------------------------------------DTDFITT 254 (365)
T ss_dssp HHH-HHHHHCSSEEEE---------------------------------------------------------SSCHHHH
T ss_pred HHH-HHHhccCCEEEE---------------------------------------------------------eCCchHH
Confidence 110 001111111110 0000011
Q ss_pred cccCccCCCCChhhhhHHHHHHHHh-CCCcEeEEec---CC------CCCCHHHHHHHHHHHHHHHhccCCeEEEEEecC
Q 000998 298 LVGDEMLKGISGGQKKRLTTGELLV-GPARVLFMDE---IS------NGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367 (1194)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~-~~~~vlllDE---pt------sgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~ 367 (1194)
. ...+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.++++ +.++
T Consensus 255 ~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~ 328 (365)
T 1lw7_A 255 Q-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESP 328 (365)
T ss_dssp H-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECS
T ss_pred H-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCC
Confidence 1 1236677788888887775 5899999999 65 5899999999999998876543445444 4555
Q ss_pred hhHHHhhcCeEEEEc
Q 000998 368 APEAYELFDDVILLS 382 (1194)
Q Consensus 368 ~~~~~~~~D~vilL~ 382 (1194)
.+...++|.+.+++
T Consensus 329 -~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 329 -SYLDRYNQVKAVIE 342 (365)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 34555666555554
No 204
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.27 E-value=5.8e-13 Score=155.04 Aligned_cols=130 Identities=17% Similarity=0.272 Sum_probs=94.8
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCee-EEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHH
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII-EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLES 922 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~ 922 (1194)
+|++++ +++|++++|+||||||||||+++|+|... +. +|.|.+.|.+.. ...+..++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 566665 78999999999999999999999999654 23 688877776543 22345567888741
Q ss_pred HHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000998 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1194)
Q Consensus 923 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~ 1002 (1194)
+++. ...+ +.+|+.+|..+|++|++|||| |..
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1111 0134 468999999999999999999 766
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEc
Q 000998 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1194)
Q Consensus 1003 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 1043 (1194)
+.. .+++. +..|.+|++|+|+.+ ....+||++.|.
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 543 34443 456999999999965 556778876654
No 205
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.27 E-value=7.5e-12 Score=134.58 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=57.4
Q ss_pred CChhh--hhHHHHHHHHhCC-CcEeEEecCCCCCCHHH--------HHHHHHHHHHHHhccCCeEEEEEecChh------
Q 000998 307 ISGGQ--KKRLTTGELLVGP-ARVLFMDEISNGLDSST--------TYQIIKYLKHSTRALDGTTVISLLQPAP------ 369 (1194)
Q Consensus 307 LSGGq--kqRvsia~al~~~-~~vlllDEptsgLD~~~--------~~~i~~~l~~~~~~~~~t~ii~~~q~~~------ 369 (1194)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+.+++..+.++++ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 45554 5678888899985 99999999999999733 355667788887765656554 556543
Q ss_pred -------HHHhhcCeEEEEcCC
Q 000998 370 -------EAYELFDDVILLSEG 384 (1194)
Q Consensus 370 -------~~~~~~D~vilL~~G 384 (1194)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567899999999754
No 206
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.26 E-value=1e-11 Score=128.15 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=64.3
Q ss_pred CCCCChhhhhHHHHHHHHh----CCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 000998 304 LKGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1194)
Q Consensus 304 ~~~LSGGqkqRvsia~al~----~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vi 379 (1194)
+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +++ +++++|. ..+...+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~-~~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLR-DVMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSC-HHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEec-HHHHHhCCEEE
Confidence 4579999999999999996 66899999999999999999999999998753 344 4445555 45778999998
Q ss_pred EE--cCCeE
Q 000998 380 LL--SEGQI 386 (1194)
Q Consensus 380 lL--~~G~i 386 (1194)
.+ .+|..
T Consensus 138 ~v~~~~g~s 146 (173)
T 3kta_B 138 GVSMRDGVS 146 (173)
T ss_dssp EEEEETTEE
T ss_pred EEEecCCEE
Confidence 66 45643
No 207
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.26 E-value=8.9e-15 Score=154.08 Aligned_cols=167 Identities=15% Similarity=0.157 Sum_probs=108.3
Q ss_pred CcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCc
Q 000998 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSE 934 (1194)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~ 934 (1194)
|++++|+||||||||||+++|++. ..|.+.++|.+... ....|+++|.....+..|+++++.+.+.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLL-- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHh--
Confidence 689999999999999999999873 24778898864321 12357777765444556788887664322100
Q ss_pred CcHHHHHHHHHHHHHHcCCCcccCCcccC---CCCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHH
Q 000998 935 IELETQRAFVEEVMELVELTSLSGALIGL---PGINGL--STEQRKRLTIAV------ELVANPSIVFMDEPTSGLDARA 1003 (1194)
Q Consensus 935 ~~~~~~~~~v~~~l~~l~l~~~~~~~~~~---~~~~~L--SgGqrqrl~ia~------aL~~~p~illLDEPTsgLD~~~ 1003 (1194)
-+...+.+...+. .....+ |+|++|++.++. +++.+|+...+|+ +||+..
T Consensus 72 ----------------~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 72 ----------------AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp ----------------TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred ----------------cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0000011110000 000124 778888888888 8999998888884 899988
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecC-CcHHHHHhcCeEEEEccCcEEEEeCCCC
Q 000998 1004 AAIVMRTVRNIVNTGRTIVCTIHQ-PSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1194)
Q Consensus 1004 ~~~i~~~l~~l~~~g~tvi~~~H~-~~~~~~~~~d~~~~l~~gG~~~~~g~~~ 1055 (1194)
... ++.++.+...+.+||.++|. ++ ++.+.+|+|+ + .|+++..|++.
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~~ 180 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAGD 180 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--H-CGGGSCC----
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--h-CCcEEEeecCC
Confidence 877 88888876567899999998 65 5677899998 5 68999888763
No 208
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.24 E-value=3.3e-15 Score=170.65 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=100.2
Q ss_pred cEEEEEccCCCChHHHHhhhcCCCCC------CeeEEEEEEcCccCCh------------------hcccceeeEe---e
Q 000998 856 VLTALVGVSGAGKTTLMDVLAGRKTG------GIIEGDIYISGYPKRQ------------------ETFARISGYC---E 908 (1194)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~~~~------~~~~G~i~i~g~~~~~------------------~~~~~~~gyv---~ 908 (1194)
++++|+|+||||||||++.|.|...+ .+..|+|.|||.++.. ..+.+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999987521 1356889999876532 1234456777 6
Q ss_pred cCCCCCCCCcHHHHHHHHhhhcCCCcC---cHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhh
Q 000998 909 QNDIHSPGLTVLESLLFSAWLRLPSEI---ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1194)
Q Consensus 909 Q~~~~~~~lTv~e~l~f~~~lr~~~~~---~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~ 985 (1194)
|+..+.+..++.|+..++......... ........++.++..+++.+..+.. .++|+||+||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 776666677888876542100000000 0000000111122233333333322 2589999999998899999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000998 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1194)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 1029 (1194)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67888888874 6899999999753
No 209
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=1.2e-12 Score=153.55 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=76.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCC--CCCceEEEEecCCCCCCCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEMT 225 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lT 225 (1194)
+.+++|+|+.| +|+||||||||||+++|+|...+. .| ++|...... ...+.++|++|++..++.+|
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~---~~---~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Lt 91 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYS---PE---YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 91 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCC---CC---CCSCC-----CCEEEEEECC------CEEEE
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCC---CC---CCCcccCCccceeeeeEEEEEecCCccccee
Confidence 46999999998 999999999999999999987542 22 122221111 11245789999988888899
Q ss_pred HHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 000998 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1194)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1194)
|.||+.|+..... ...+ ...++++ + .
T Consensus 92 v~Dt~g~~~~~~~-~~~~-----------------------------------~~i~~~i-~-----------------~ 117 (418)
T 2qag_C 92 IVDTPGFGDAVDN-SNCW-----------------------------------QPVIDYI-D-----------------S 117 (418)
T ss_dssp EEECC------------C-----------------------------------HHHHHHH-H-----------------H
T ss_pred eeechhhhhhccc-hhhH-----------------------------------HHHHHHH-H-----------------H
Confidence 9999877532110 0000 0001111 0 1
Q ss_pred CCChhhhhHHHHHHHHhCCCc---EeEEecCC-CCCCHHHH
Q 000998 306 GISGGQKKRLTTGELLVGPAR---VLFMDEIS-NGLDSSTT 342 (1194)
Q Consensus 306 ~LSGGqkqRvsia~al~~~~~---vlllDEpt-sgLD~~~~ 342 (1194)
.++++.++|++||++++.+|+ ++++|||| +|||+...
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH
Confidence 366678889999999999999 99999999 69998873
No 210
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.24 E-value=1.7e-14 Score=151.87 Aligned_cols=169 Identities=11% Similarity=0.058 Sum_probs=106.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhccCCC
Q 000998 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240 (1194)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 240 (1194)
|++++|+||||||||||+++|++. .+|.+.++|.++... ...++++|.+...+.+|+++++.+.++....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLL- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH-
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHh-
Confidence 689999999999999999999973 268899998665332 1346677765445556888888764321100
Q ss_pred CchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccC---ccCCCC--ChhhhhHH
Q 000998 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD---EMLKGI--SGGQKKRL 315 (1194)
Q Consensus 241 ~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqkqRv 315 (1194)
.+ -....+...+. +..+.+ |+|+++++
T Consensus 72 ---------------~~---------------------------------~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 72 ---------------AQ---------------------------------NDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp ---------------TT---------------------------------CEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred ---------------cC---------------------------------CcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 00 00000000000 001124 89999998
Q ss_pred HHHH------HHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecC-hhHHHhhcCeEEEEcCCeEEE
Q 000998 316 TTGE------LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP-APEAYELFDDVILLSEGQIVY 388 (1194)
Q Consensus 316 sia~------al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~-~~~~~~~~D~vilL~~G~iv~ 388 (1194)
.++. +++.+++...+|+ +||+..... ++.++.+.. .+. +++...|. .+++.+.+|+|+ .+|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~-~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DER-YFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTT-SEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-Ccc-EEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8888888888884 899988877 777776642 233 44445566 788999999998 9999999
Q ss_pred ecChhhH
Q 000998 389 QGPRVSV 395 (1194)
Q Consensus 389 ~G~~~~~ 395 (1194)
.|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9987654
No 211
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.23 E-value=6.9e-13 Score=139.63 Aligned_cols=141 Identities=13% Similarity=0.056 Sum_probs=89.0
Q ss_pred EeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh-cccceeeEeecCCCCCCCCcHHHHHHHHhhhc
Q 000998 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1194)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr 930 (1194)
+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+.++|++|+.. +..|+.|++.+.+...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 57899999999999999999999999732 58899998653221 11234678887644 4578899887654321
Q ss_pred CCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000998 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010 (1194)
Q Consensus 931 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 1010 (1194)
...... ..++.++...++...... +. .+..+|+|++|+++++|++.++|+++ +|+.....+.+.
T Consensus 80 ~~~~~~-----~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 80 AKEGYF-----VILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHTSCE-----EEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred hccCCe-----EEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 000000 000000000111111100 11 12469999999999999999999876 688777777766
Q ss_pred HHHH
Q 000998 1011 VRNI 1014 (1194)
Q Consensus 1011 l~~l 1014 (1194)
++.+
T Consensus 144 ~~~l 147 (191)
T 1zp6_A 144 FADL 147 (191)
T ss_dssp TTCC
T ss_pred Hhcc
Confidence 6554
No 212
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.23 E-value=7.5e-13 Score=153.62 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=98.3
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC-ChhcccceeeEee-cCCCCCCCCcHHH
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK-RQETFARISGYCE-QNDIHSPGLTVLE 921 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~-~~~~~~~~~gyv~-Q~~~~~~~lTv~e 921 (1194)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|... .....++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 44899999999999999999999999999999998763 479999998532 1122456678887 54321
Q ss_pred HHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000998 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1194)
Q Consensus 922 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1194)
+++++...+-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222345566667777899999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEccC
Q 000998 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1194)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 1045 (1194)
..+.+.++.+.....|++.++|..+ ....+||+..|..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2355667766544568899999965 45678999988764
No 213
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.23 E-value=5.6e-13 Score=135.76 Aligned_cols=78 Identities=18% Similarity=0.055 Sum_probs=65.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1194)
..+++++|+.+++|++++|+||||||||||+++|+|.+ +. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999998 65 899999998764211111 2899998777 89999
Q ss_pred HHHHH
Q 000998 228 ETLDF 232 (1194)
Q Consensus 228 E~l~f 232 (1194)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 214
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.20 E-value=5e-14 Score=164.26 Aligned_cols=161 Identities=11% Similarity=0.084 Sum_probs=95.3
Q ss_pred eeeeEEEeC--CcEEEEEccCCCChHHHHhhhcCCCCCCeeE----EEEEEc----CccC--ChhcccceeeEeecCCCC
Q 000998 846 VNVTGAFRP--GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE----GDIYIS----GYPK--RQETFARISGYCEQNDIH 913 (1194)
Q Consensus 846 ~~vs~~i~~--Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~----G~i~i~----g~~~--~~~~~~~~~gyv~Q~~~~ 913 (1194)
+.|++.|++ |++++|+||||||||||+++|+|... +.+ |.|+++ |.+. ....+ +.++|++|+...
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 478888999 99999999999999999999999765 345 555553 2111 00011 112333322110
Q ss_pred CCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHh-hCCCEEEE
Q 000998 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV-ANPSIVFM 992 (1194)
Q Consensus 914 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~-~~p~illL 992 (1194)
+ ..|+.||+.|. + .+..+.. ...+|+|++++..+++++. .+|+++||
T Consensus 236 ~-~~t~~~nl~~~-------------------------~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllL 283 (365)
T 1lw7_A 236 Y-AVRHSHKIAFI-------------------------D-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTIL 283 (365)
T ss_dssp H-HHHHCSSEEEE-------------------------S-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEE
T ss_pred H-HHhccCCEEEE-------------------------e-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEE
Confidence 0 01111111110 0 0000000 1135667778888888775 59999999
Q ss_pred eC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEc
Q 000998 993 DE---PT------SGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1194)
Q Consensus 993 DE---PT------sgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~ 1043 (1194)
|| |+ +++|...+..+.+.|+++.+ .|.+||+++|. + .....+|++.+++
T Consensus 284 dE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 284 LKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 99 65 68999999999999998764 48999999975 3 3444556555543
No 215
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.20 E-value=5.5e-12 Score=146.34 Aligned_cols=67 Identities=21% Similarity=0.188 Sum_probs=52.4
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC-CCceEEEEe-cCCC
Q 000998 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVS-QQDW 219 (1194)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~-Q~d~ 219 (1194)
+++++|+.+++|++++|+||||||||||+++|+|.+++. +|.|+++|..--... .++.++|++ |++.
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~ 232 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAK 232 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccc
Confidence 449999999999999999999999999999999999876 899999985311111 345688888 5543
No 216
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.19 E-value=1.6e-13 Score=141.68 Aligned_cols=112 Identities=21% Similarity=0.159 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC------CC-ceEE----EEecCCCCCCCCCHHHHH
Q 000998 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PP-RTSA----YVSQQDWQVAEMTVRETL 230 (1194)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 230 (1194)
++++|+|+||||||||++.|+|.+.+.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998764223799999998854432 11 2355 788876644 000
Q ss_pred HHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChh
Q 000998 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310 (1194)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 310 (1194)
+ . .+. . . ..+.+++. .|+ ..||.||+ +||||
T Consensus 77 -------~--~-----~~~-----~------a------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--S-----EEE-----G------N------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--C-----HHH-----H------T------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--C-----hhh-----h------h------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 0 000 0 0 02333333 133 57899997 59999
Q ss_pred hhhHHHHHHHHhCCCcEe
Q 000998 311 QKKRLTTGELLVGPARVL 328 (1194)
Q Consensus 311 qkqRvsia~al~~~~~vl 328 (1194)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999763
No 217
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.19 E-value=4.8e-14 Score=155.14 Aligned_cols=144 Identities=18% Similarity=0.263 Sum_probs=97.6
Q ss_pred CCcEEEEEccCCCChHHHHhhhc---CCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhh--
Q 000998 854 PGVLTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW-- 928 (1194)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~-- 928 (1194)
++++++|+||||||||||+++|+ |... +..|+|.++|.+.. ....+.+++++|+..+.+..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 9765 55788877775432 1223345667787777888899999976431
Q ss_pred ------hc-CCCcCcHHHHHHHHHHHHHH--cC------------CCcccCCcccCCCCCCCCHHHHHHHHHHHHH-hhC
Q 000998 929 ------LR-LPSEIELETQRAFVEEVMEL--VE------------LTSLSGALIGLPGINGLSTEQRKRLTIAVEL-VAN 986 (1194)
Q Consensus 929 ------lr-~~~~~~~~~~~~~v~~~l~~--l~------------l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL-~~~ 986 (1194)
+. .+. .. ..++.+... .+ +..+.+.. +..||| |+ ++| +.+
T Consensus 103 ~~~~~il~g~~~--~~----~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~ 164 (246)
T 2bbw_A 103 RGQHWLLDGFPR--TL----GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNP 164 (246)
T ss_dssp TTSCEEEESCCC--SH----HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSC
T ss_pred CCCeEEEECCCC--CH----HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCC
Confidence 11 111 11 111222111 11 11111221 246888 55 677 999
Q ss_pred CCEEEEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 000998 987 PSIVFMD----EPTSGLDARAAAIVMRTVRNIVNTG 1018 (1194)
Q Consensus 987 p~illLD----EPTsgLD~~~~~~i~~~l~~l~~~g 1018 (1194)
|++++|| |||+|||..+...+.+.++++.+++
T Consensus 165 P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 165 PHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred CcccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999 9999999999999999999886553
No 218
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.19 E-value=4.2e-12 Score=133.62 Aligned_cols=140 Identities=15% Similarity=0.085 Sum_probs=87.0
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC-CCceEEEEecCCCCCCCCCHHHHHHHhhh
Q 000998 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLDFAGQ 235 (1194)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 235 (1194)
.+++|++++|+||||||||||+++|+|.. . .|.|.++|.++.... ..+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~--~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP--G---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS--S---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc--C---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 36799999999999999999999999973 2 799999987643221 2234577777653 45789999876432
Q ss_pred ccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHH
Q 000998 236 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315 (1194)
Q Consensus 236 ~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRv 315 (1194)
....+ +.. .- ++.++..+++..... .+ ..+..+|+|++||+
T Consensus 78 ~~~~~----------------~~~--~~------------------~~~~~~~~~l~~~~~--~~-~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYAKE----------------GYF--VI------------------LDGVVRPDWLPAFTA--LA-RPLHYIVLRTTAAE 118 (191)
T ss_dssp HHHHT----------------SCE--EE------------------ECSCCCTTTTHHHHT--TC-SCEEEEEEECCHHH
T ss_pred HHhcc----------------CCe--EE------------------EeccCcHHHHHHHHh--cC-CCeEEEEecCCHHH
Confidence 11000 000 00 000000011111110 00 11235999999999
Q ss_pred HHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHH
Q 000998 316 TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK 350 (1194)
Q Consensus 316 sia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~ 350 (1194)
.++|++..+|+++ +|+.....+.+.++
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~ 145 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFA 145 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHh
Confidence 9999999999876 68876666665554
No 219
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.18 E-value=4.7e-11 Score=139.34 Aligned_cols=78 Identities=24% Similarity=0.372 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 000998 966 INGLSTEQRKRL------TIAVELVAN-PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038 (1194)
Q Consensus 966 ~~~LSgGqrqrl------~ia~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 1038 (1194)
+..||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999988 567888999 99999999999999999999999999864 4579999999975 4678999
Q ss_pred EEEEccCc
Q 000998 1039 LLFMKRGG 1046 (1194)
Q Consensus 1039 ~~~l~~gG 1046 (1194)
+++|.+.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99997544
No 220
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.18 E-value=1.8e-11 Score=133.72 Aligned_cols=148 Identities=21% Similarity=0.297 Sum_probs=84.8
Q ss_pred EEEeCCcEEEEEccCCCChHHHHhhhcC--CCCC---CeeEEEEEEcCccC-Chhc---ccceeeEeecCCCCCCCCcHH
Q 000998 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTG---GIIEGDIYISGYPK-RQET---FARISGYCEQNDIHSPGLTVL 920 (1194)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g--~~~~---~~~~G~i~i~g~~~-~~~~---~~~~~gyv~Q~~~~~~~lTv~ 920 (1194)
+-+++|++++|+||||||||||++.|++ .... +...|.+++++... .... ..+.+|+.+|
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~----------- 87 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS----------- 87 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-----------
Confidence 4689999999999999999999999998 3321 11246777776531 1100 0111111111
Q ss_pred HHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHH-HHHHHHHHh--hCCCEEEEeCCCC
Q 000998 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK-RLTIAVELV--ANPSIVFMDEPTS 997 (1194)
Q Consensus 921 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq-rl~ia~aL~--~~p~illLDEPTs 997 (1194)
++++.+. + ....+..+.. .+.-+.+++ .+|+++++||||+
T Consensus 88 -------------------------~~~~~~~--------~----~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 88 -------------------------DVLDNVA--------Y----ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp -------------------------HHHHTEE--------E----EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred -------------------------HHhhCeE--------E----EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1111110 0 0123444433 233333444 4799999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHhC-CCEEEEEecCCcHH------------------HHHhcCeEEEEccC
Q 000998 998 GLDAR-------A-----AAIVMRTVRNIVNT-GRTIVCTIHQPSID------------------IFESFDELLFMKRG 1045 (1194)
Q Consensus 998 gLD~~-------~-----~~~i~~~l~~l~~~-g~tvi~~~H~~~~~------------------~~~~~d~~~~l~~g 1045 (1194)
.+|+. + ...+++.|++++++ |.|||+++|..... +...+|.+++|.++
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99975 3 34566667766654 99999999964311 11168999999853
No 221
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=5.2e-12 Score=147.46 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=98.4
Q ss_pred eecceEeEeCCeE--EEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCC---CCCceEEEEecCCCCCCCCC
Q 000998 151 LDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---VPPRTSAYVSQQDWQVAEMT 225 (1194)
Q Consensus 151 L~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~---~~~~~~~yv~Q~d~~~~~lT 225 (1194)
|+++|+.+++|++ ++|+||||||||||+++|+|.. ..| .++... ...+.++|++|++.+++.+|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-----l~g------~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-----FEG------EPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-----C-------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-----ccC------CcCCCCCccceEeeEEEEeecCccccccc
Confidence 9999999999999 9999999999999999999973 122 222111 11346899999988888999
Q ss_pred HHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHh-CCcc----ccccc--
Q 000998 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDT----CADTL-- 298 (1194)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~l-gL~~----~~dt~-- 298 (1194)
|.||+.|+..... ...+.. +..++ ....+.+|... ++.. ..|+.
T Consensus 99 v~D~~~~g~~~~~-~~~~~~------------------i~~~i----------~~q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQINK-EDSYKP------------------IVEFI----------DAQFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CCH-HHHSHH------------------HHHHH----------HHHHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhcccc-chhhhH------------------HHHHH----------HHHHHHHHHHHHhhhhhhccccccccc
Confidence 9999977532110 000000 00011 11233344433 4431 12222
Q ss_pred --cc--CccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHH
Q 000998 299 --VG--DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1194)
Q Consensus 299 --vg--~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~ 351 (1194)
|. .+...+|+-.+ +.++++|..+++|+++|||+..|.+.....+.+.+++
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 11 01113566666 7899999999999999999999999888888888886
No 222
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.16 E-value=6.4e-13 Score=141.90 Aligned_cols=69 Identities=10% Similarity=-0.070 Sum_probs=54.2
Q ss_pred HHHHHHHhCCcccccccccCccCCCCChhhhhH-HHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHh
Q 000998 282 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKR-LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1194)
Q Consensus 282 ~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR-vsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~ 354 (1194)
+...++..+++.. .|++ ....+|+||||| +..+++++.+|..+++|||||++|.....++++.|.+...
T Consensus 129 ~~~~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 129 MIEWAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3445556676642 1232 233599999999 8999999999999999999999999999999999988764
No 223
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.15 E-value=4.8e-12 Score=142.03 Aligned_cols=129 Identities=16% Similarity=0.255 Sum_probs=84.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhh---
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQ--- 235 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~--- 235 (1194)
+++.+++|.||+|||||||.+.|++.+.+ .| .. .+.+.+|+|++.+++. ++++|+.++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~~------~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------GG------EKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------GG------GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------CC------CceEEEeccccccCCh-HHHHHHhccccccc
Confidence 46789999999999999999999998854 22 00 2345666999998865 89999987531
Q ss_pred -c--cCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCc--c--cccccccCccCCCCC
Q 000998 236 -C--QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD--T--CADTLVGDEMLKGIS 308 (1194)
Q Consensus 236 -~--~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~--~--~~dt~vg~~~~~~LS 308 (1194)
. ++.... -|.+ .....++.+.-. . .....+. .+...+|
T Consensus 92 l~~~~g~p~a-------------------~d~~---------------~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~s 136 (290)
T 1odf_A 92 LLQGRGLPGT-------------------HDMK---------------LLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQF 136 (290)
T ss_dssp GGSSSCSTTS-------------------BCHH---------------HHHHHHHHHTC------CCEEEEC-CEETTHH
T ss_pred hhhhccCcch-------------------hHHH---------------HHHHHHHHhhccCccccCcceeec-cCccccC
Confidence 0 111111 1111 123344444321 0 0111122 2335799
Q ss_pred hhhhhHHHHH--HHHhCCCcEeEEecCCCCCCHHH
Q 000998 309 GGQKKRLTTG--ELLVGPARVLFMDEISNGLDSST 341 (1194)
Q Consensus 309 GGqkqRvsia--~al~~~~~vlllDEptsgLD~~~ 341 (1194)
|||+||+++| +++ +|+|+|+||++++||+..
T Consensus 137 gGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 137 KGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred CccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 9999999997 555 899999999999999864
No 224
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.15 E-value=7.4e-12 Score=143.40 Aligned_cols=115 Identities=18% Similarity=0.120 Sum_probs=81.1
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEc-CccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhhcC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~ 931 (1194)
.+|++++|+||||||||||+|+|+|.... +.+|+|.++ |.... .+..+.++|++|+..++++.|++|+. +
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~-----l-- 283 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG-----L-- 283 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTCC-----C--
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh-----h--
Confidence 37999999999999999999999997641 347999887 75542 23456789999998888888999841 1
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHH
Q 000998 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 983 (1194)
Q Consensus 932 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL 983 (1194)
.....++..+.+.++++.+++.++.+... .++| ||+||++||+++
T Consensus 284 -~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 284 -WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp -CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred -cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 12344455566778888889887777653 5799 999999999875
No 225
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.14 E-value=4.4e-13 Score=147.44 Aligned_cols=157 Identities=20% Similarity=0.186 Sum_probs=94.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---cCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhh-
Q 000998 160 PSRLTLLLGPPSSGKTTLLLALA---GRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQ- 235 (1194)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~---G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~- 235 (1194)
++++++|+||||||||||+++|+ |...+ ..|+|.++|.+... ...+.+.+++|+...++..|+.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 87654 37888887654211 011234556777777888899999976432
Q ss_pred -------ccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 000998 236 -------CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1194)
Q Consensus 236 -------~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1194)
+.+.....+ + .+..... ...++-.+ +.. . .+.++ ....+ +....||
T Consensus 102 ~~~~~~il~g~~~~~~---~---~~~l~~~-~~~~~vi~-----L~~-~----~~~~l-----~r~~~-----r~~~~lS 154 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLG---Q---AEALDKI-CEVDLVIS-----LNI-P----FETLK-----DRLSR-----RWIHPPS 154 (246)
T ss_dssp CTTSCEEEESCCCSHH---H---HHHHHTT-CCCCEEEE-----EEC-C----HHHHH-----HHHHT-----EEEETTT
T ss_pred cCCCeEEEECCCCCHH---H---HHHHHhh-cCCCEEEE-----EEC-C----HHHHH-----HHHHc-----CCCcCCC
Confidence 111110000 0 0000000 00000000 000 0 00001 11112 2234599
Q ss_pred hhhhhHHHHHHHH-hCCCcEeEEe----cCCCCCCHHHHHHHHHHHHHHHh
Q 000998 309 GGQKKRLTTGELL-VGPARVLFMD----EISNGLDSSTTYQIIKYLKHSTR 354 (1194)
Q Consensus 309 GGqkqRvsia~al-~~~~~vlllD----EptsgLD~~~~~~i~~~l~~~~~ 354 (1194)
| || +++ +.+|++++|| |||+|||..+...+.+.++.+..
T Consensus 155 g----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 155 G----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp T----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred C----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 9 66 677 9999999999 99999999999999999987754
No 226
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.14 E-value=2.5e-12 Score=151.80 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=100.0
Q ss_pred eeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh-------hc--ccceeeEeecCCCCCCC
Q 000998 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ET--FARISGYCEQNDIHSPG 916 (1194)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~--~~~~~gyv~Q~~~~~~~ 916 (1194)
+++|+.+++|++++|+|+||||||||+++|+|... +..|+|.++|.+... .. .++.++|++|+..+.+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 37888999999999999999999999999999754 236899998765421 11 24568999999888888
Q ss_pred CcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHh-hCCC-EEEEeC
Q 000998 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV-ANPS-IVFMDE 994 (1194)
Q Consensus 917 lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~-~~p~-illLDE 994 (1194)
+|+++++.+...-. .+. -+++..|+.+.. ..+-..-+|++.+++++. ..|. +||...
T Consensus 362 ~tV~e~l~~a~~~~--~Dv----------VLIDTaGrl~~~---------~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKARN--IDV----------LIADTAGRLQNK---------SHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHTT--CSE----------EEECCCCSCCCH---------HHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHhcC--CCE----------EEEeCCCccchh---------hhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 99999998753211 000 001111111100 012223457788888663 4574 555555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Q 000998 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIH 1026 (1194)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H 1026 (1194)
||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 88886544 33444443 4889999999
No 227
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.13 E-value=7.1e-13 Score=134.99 Aligned_cols=80 Identities=24% Similarity=0.203 Sum_probs=65.7
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcH
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 919 (1194)
+++.++++||+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++... .. ...|++|+..++ .+|+
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~-~~-~~~~~~q~~~l~-~ltv 91 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEE-YN-IAGKMIYHFDLY-RLAD 91 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEE-EE-ETTEEEEEEECT-TCSC
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeee-cc-CCCcceeccccc-cCCc
Confidence 4456889999999999999999999999999999999976 3 479999999876421 11 113899988787 8999
Q ss_pred HHHHHH
Q 000998 920 LESLLF 925 (1194)
Q Consensus 920 ~e~l~f 925 (1194)
.|++.+
T Consensus 92 ~e~l~~ 97 (158)
T 1htw_A 92 PEELEF 97 (158)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 999965
No 228
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.12 E-value=1.7e-11 Score=142.58 Aligned_cols=131 Identities=22% Similarity=0.266 Sum_probs=91.8
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHH
Q 000998 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1194)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1194)
+|++++ +++|++++|+|||||||||||++|+|.+++. .+|+|.+.|.++. ...+..++||+|...
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~---------- 191 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQREV---------- 191 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEEB----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeeec----------
Confidence 678876 8999999999999999999999999988642 1699977775543 333455677777410
Q ss_pred HHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCCh
Q 000998 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1194)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 309 (1194)
|++ . ..+
T Consensus 192 ------------------------------------------------------------g~~----~-------~~~-- 198 (372)
T 2ewv_A 192 ------------------------------------------------------------GED----T-------KSF-- 198 (372)
T ss_dssp ------------------------------------------------------------TTT----B-------SCS--
T ss_pred ------------------------------------------------------------CCC----H-------HHH--
Confidence 000 0 123
Q ss_pred hhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000998 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1194)
Q Consensus 310 GqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1194)
+.+|+++|..+|+++++|||+ |..+... .++. +. .+.+ +++++|.. ++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~-~g~~-vi~t~H~~-~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AE-TGHL-VFGTLHTN-TAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HT-TTCE-EEECCCCC-SHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hh-cCCE-EEEEECcc-hHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3443 22 3444 55555653 4778888887664
No 229
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.11 E-value=1.6e-13 Score=157.71 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=104.3
Q ss_pred eEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cccceeeEeecCCCCC
Q 000998 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARISGYCEQNDIHS 914 (1194)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~~~~~ 914 (1194)
..+|+++|+.+++|++++|+||||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++.++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 457889999999999999999999999999999999654 2358888888765321 2345689999988776
Q ss_pred CCC------------cHHHHHHHH-----------------------------hhhcCCCcCcHHHHHHHHHHHHHHcCC
Q 000998 915 PGL------------TVLESLLFS-----------------------------AWLRLPSEIELETQRAFVEEVMELVEL 953 (1194)
Q Consensus 915 ~~l------------Tv~e~l~f~-----------------------------~~lr~~~~~~~~~~~~~v~~~l~~l~l 953 (1194)
+.. +++|.+... ..+..+.. ..........+++...+
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~--~~~~~~i~~~i~~~~~i 197 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGA--GDELQGIKKGIFELADM 197 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC--------CCTTHHHHCSE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCC--cccHHHHHHHHhccccE
Confidence 431 233333110 00000000 00000000011122111
Q ss_pred CcccCCcccCCCCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000998 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVA------NPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015 (1194)
Q Consensus 954 ~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~l~ 1015 (1194)
.-+ |+..- .....+|+|++|++..|++++. +|++++ ||++|......+++.|.++.
T Consensus 198 vvl-NK~Dl-~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 198 IAV-NKADD-GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp EEE-ECCST-TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred EEE-Echhc-cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 111 21110 0113579999999999999987 688887 99999999999999998864
No 230
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.10 E-value=4.4e-12 Score=148.82 Aligned_cols=169 Identities=16% Similarity=0.164 Sum_probs=96.0
Q ss_pred eeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHH
Q 000998 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1194)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f 925 (1194)
++|++++++|+.++|+|+|||||||||++|+|... .+.+++.. +....+|++.+++. ..+++.++.-+
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEecccc
Confidence 69999999999999999999999999999998643 23344322 12234566665431 01111111100
Q ss_pred HhhhcCCCcCcHHHHH--HHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000998 926 SAWLRLPSEIELETQR--AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1194)
Q Consensus 926 ~~~lr~~~~~~~~~~~--~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1194)
.-.............+ +.++.++..+++. +. ....||+|++|++.+|++|+.+|.||++ +++|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000000011111000 0111122222222 11 1346999999999999999999999999 9999887
Q ss_pred HHHHHHHHHHH-HhCCCEEEEEecCCcHHHHHhcCeE
Q 000998 1004 AAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDEL 1039 (1194)
Q Consensus 1004 ~~~i~~~l~~l-~~~g~tvi~~~H~~~~~~~~~~d~~ 1039 (1194)
+ ..++.+++. .+.|.+++.+|......+-+.++.+
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 6 444444444 3457777766543232344444443
No 231
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.10 E-value=4.9e-11 Score=120.32 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=37.1
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCc
Q 000998 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT-IVCTIHQPS 1029 (1194)
Q Consensus 984 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~t-vi~~~H~~~ 1029 (1194)
+.+|++|++|||++ +|...+..+.+++..+.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 5555588899999988877888 888998643
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.10 E-value=9.5e-12 Score=142.49 Aligned_cols=121 Identities=17% Similarity=0.114 Sum_probs=79.7
Q ss_pred eecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCceeeEEEEC-CccCCCCCCCceEEEEecCCCCCCCCCHHH
Q 000998 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-HHLQVSGKITYN-GHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1194)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~-~~~~~~G~i~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1194)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 5566664 4899999999999999999999999987 64 8999987 755432 23467899999998899889988
Q ss_pred HHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 000998 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1194)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1194)
+ .. .+.. . . + ....++++++.+|+.+..|... .++|
T Consensus 281 ~---~l--~~l~------~----~----------e--------------~~~~~~e~l~~~gl~~f~~~~~-----~~lS 316 (358)
T 2rcn_A 281 F---GL--WHLE------P----E----------Q--------------ITQGFVEFHDYLGHCKYRDCKH-----DADP 316 (358)
T ss_dssp C---CC--CCCC------H----H----------H--------------HHHTSGGGGGGTTCSSSTTCCS-----SSCT
T ss_pred h---hh--cCCC------H----H----------H--------------HHHHHHHHHHHcCCchhcCCCc-----ccCC
Confidence 3 11 1100 0 0 0 0112445667788876666554 4699
Q ss_pred hhhhhHHHHHHHH
Q 000998 309 GGQKKRLTTGELL 321 (1194)
Q Consensus 309 GGqkqRvsia~al 321 (1194)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999864
No 233
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.09 E-value=5e-12 Score=149.18 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=67.7
Q ss_pred eecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCC-------C--CCceEEEEecCCCCC
Q 000998 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------V--PPRTSAYVSQQDWQV 221 (1194)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-------~--~~~~~~yv~Q~d~~~ 221 (1194)
-+++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999998664 89999987654321 0 134689999998878
Q ss_pred CCCCHHHHHHHhh
Q 000998 222 AEMTVRETLDFAG 234 (1194)
Q Consensus 222 ~~lTV~E~l~f~~ 234 (1194)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998864
No 234
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.09 E-value=1.4e-10 Score=138.08 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 000998 967 NGLSTEQRKRLTIAVELV----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1194)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l 1042 (1194)
..||||||||++||++|+ .+|++++|||||++||+.....+.+.|+++...|.++|+|+|++ .....+|++++|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 469999999999999999 57999999999999999999999999999865688999999994 467789999998
Q ss_pred cc
Q 000998 1043 KR 1044 (1194)
Q Consensus 1043 ~~ 1044 (1194)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 235
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.09 E-value=4.3e-11 Score=130.73 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=27.4
Q ss_pred EeEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 000998 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1194)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1194)
+-+++|++++|+||||||||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999994
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.08 E-value=7.1e-12 Score=142.79 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=94.2
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh-------cccce--eeEeecCCCCCCCCcHHHHH
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARI--SGYCEQNDIHSPGLTVLESL 923 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gyv~Q~~~~~~~lTv~e~l 923 (1194)
++|++++|+||||||||||+++|+|... +..|+|.+.|.+.... .+++. +.|++|...+.|.+|++|++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 6899999999999999999999999754 3468999998875321 12333 45999998889999999999
Q ss_pred HHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000998 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1194)
Q Consensus 924 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1194)
.++..... +. -+++..|+.+..+. =.++.-.|++++..++.+++||.+| |.
T Consensus 205 ~~~~~~~~--d~----------vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t-~~---- 255 (328)
T 3e70_C 205 QHAKARGI--DV----------VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALA-GN---- 255 (328)
T ss_dssp HHHHHHTC--SE----------EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGG-TT----
T ss_pred HHHHhccc--hh----------hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHH-HH----
Confidence 76532110 00 01111222211111 1123334889998888888888554 43
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecC
Q 000998 1004 AAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1194)
Q Consensus 1004 ~~~i~~~l~~l~~-~g~tvi~~~H~ 1027 (1194)
.+++.++.+.+ .+.|+|++||.
T Consensus 256 --~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 --AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --HHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHhcCCCEEEEeCc
Confidence 44555666653 58999999994
No 237
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.07 E-value=9.7e-13 Score=135.76 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=82.9
Q ss_pred cEEEEEccCCCChHHHHhhhcCCCCC-CeeEEEEEEcCccCC------hhccc-ceee----EeecCCCCCCCCcHHHHH
Q 000998 856 VLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPKR------QETFA-RISG----YCEQNDIHSPGLTVLESL 923 (1194)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~Q~~~~~~~lTv~e~l 923 (1194)
++++|+|+||||||||+++|+|...+ +...|.|.++|.++. ...++ +.+| +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 57999999999999999999996542 233799999998732 12333 3566 788876644 000
Q ss_pred HHHhhhcCCCcCcHHHHHHHHHHHHHH-cCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 000998 924 LFSAWLRLPSEIELETQRAFVEEVMEL-VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV-------FMDEP 995 (1194)
Q Consensus 924 ~f~~~lr~~~~~~~~~~~~~v~~~l~~-l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~il-------lLDEP 995 (1194)
. ..+ ....++++++. +. -.|..++ .+||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~~~-~~a~l~~~i~~~l~---g~dt~i~----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SEE-EGNDLDWIYERYLS---DYDLVIT----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CHH-HHTCHHHHHHHHTT---TCSEEEE----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Chh-hhhCHHHHHHhhCC---CCCEEEE----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 001 01124455554 43 2455554 359999999999999999998762 23454
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCC
Q 000998 996 TSG---LDARAAAIVMRTVRNIVNTGR 1019 (1194)
Q Consensus 996 Tsg---LD~~~~~~i~~~l~~l~~~g~ 1019 (1194)
..+ +|......+.+.+.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 233344566666665555543
No 238
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.03 E-value=3.1e-12 Score=146.93 Aligned_cols=181 Identities=13% Similarity=0.064 Sum_probs=108.2
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCC-------CCCceEEEEecCCCCC
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQV 221 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-------~~~~~~~yv~Q~d~~~ 221 (1194)
.+|+++|+.+++|++++|+||||||||||+++|+|.+.+. +|+|.+.|.+.... ..++.++|++|++..+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 5899999999999999999999999999999999998664 89999998775322 2245689999998776
Q ss_pred CCC---------C---HHHHHHHh-h---h---ccCCCCchhhhHHHHHHHHHhCC----CCCchHHHHHHHhhccCcch
Q 000998 222 AEM---------T---VRETLDFA-G---Q---CQGVGSKYDMITELARREKIAGI----KPDEDLDIFMKSFALGGQKT 278 (1194)
Q Consensus 222 ~~l---------T---V~E~l~f~-~---~---~~~~~~~~~~~~~~~~~e~~~~~----~~~~d~~~~~k~~~~~~~~~ 278 (1194)
... | ++|.+... . . ...+|-.... .. .+...+. .....-+. .+ ..
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~-v~~~~d~vl~v~d~~~~~~-~~-------~i 187 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE---TA-VADLTDFFLVLMLPGAGDE-LQ-------GI 187 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HH-HHTTSSEEEEEECSCC--------------C
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch---hh-HHhhCCEEEEEEcCCCccc-HH-------HH
Confidence 532 2 33333110 0 0 0011111000 00 0001110 00000000 00 00
Q ss_pred hHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhC------CCcEeEEecCCCCCCHHHHHHHHHHHHHH
Q 000998 279 SLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKHS 352 (1194)
Q Consensus 279 ~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~------~~~vlllDEptsgLD~~~~~~i~~~l~~~ 352 (1194)
...+..+...+.+ +..|.. ....+|+|+++++..+.+++. .|++++ +|++|......+++.|.+.
T Consensus 188 ~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0001112222233 222211 113479999999999999887 578877 9999999999999999875
Q ss_pred H
Q 000998 353 T 353 (1194)
Q Consensus 353 ~ 353 (1194)
.
T Consensus 259 ~ 259 (337)
T 2qm8_A 259 R 259 (337)
T ss_dssp H
T ss_pred H
Confidence 4
No 239
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.02 E-value=1.4e-10 Score=120.87 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=42.5
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcH
Q 000998 983 LVANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 1030 (1194)
Q Consensus 983 L~~~p~illLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 1030 (1194)
.+.+|++|+||||++ ++|+.....+.+++....++|+++|+|||.+..
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 355999999999995 999999999999999887789999999998753
No 240
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.00 E-value=2.5e-11 Score=138.28 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=61.1
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC-------C--ceEEEEecCCCCCCCCCHH
Q 000998 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------P--RTSAYVSQQDWQVAEMTVR 227 (1194)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~--~~~~yv~Q~d~~~~~lTV~ 227 (1194)
..++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... . ..+.|++|.....|.+||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 34789999999999999999999999998765 8999999987643221 1 2356999998889999999
Q ss_pred HHHHHh
Q 000998 228 ETLDFA 233 (1194)
Q Consensus 228 E~l~f~ 233 (1194)
|++.++
T Consensus 202 e~l~~~ 207 (328)
T 3e70_C 202 DAIQHA 207 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 241
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.00 E-value=2.2e-10 Score=133.89 Aligned_cols=148 Identities=22% Similarity=0.273 Sum_probs=87.2
Q ss_pred EEEeCCcEEEEEccCCCChHHHHhhh--cCCCC---CCeeEEEEEEcCccC-Chhc---ccceeeEeecCCCCCCCCcHH
Q 000998 850 GAFRPGVLTALVGVSGAGKTTLMDVL--AGRKT---GGIIEGDIYISGYPK-RQET---FARISGYCEQNDIHSPGLTVL 920 (1194)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L--~g~~~---~~~~~G~i~i~g~~~-~~~~---~~~~~gyv~Q~~~~~~~lTv~ 920 (1194)
+-+++|++++|+||||||||||++.| .+..+ ++.-.+.+++++... .... +.+.+|+.+| ++.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vl 244 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DAL 244 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHh
Confidence 46899999999999999999999954 45432 112235777777532 1110 1111121111 111
Q ss_pred HHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCCCC
Q 000998 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST-EQRKRLTIAVELV--ANPSIVFMDEPTS 997 (1194)
Q Consensus 921 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSg-Gqrqrl~ia~aL~--~~p~illLDEPTs 997 (1194)
+|+.+ . ...+. .+.+.+..+.+++ .+|+++++||||+
T Consensus 245 eni~~------------------------------------~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 245 NNVAY------------------------------------A----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HTEEE------------------------------------E----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred hcEEE------------------------------------e----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 11110 0 01222 2333444344443 4699999999999
Q ss_pred CCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCc------------------HHHHHhcCeEEEEccC
Q 000998 998 GLDARAA------------AIVMRTVRNIVNT-GRTIVCTIHQPS------------------IDIFESFDELLFMKRG 1045 (1194)
Q Consensus 998 gLD~~~~------------~~i~~~l~~l~~~-g~tvi~~~H~~~------------------~~~~~~~d~~~~l~~g 1045 (1194)
.+|+... ..+++.|++++++ |.|||+|+|... ..+...+|.++.|.++
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 9996533 6678888888765 999999999721 1134567999988753
No 242
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.99 E-value=1.6e-11 Score=144.09 Aligned_cols=170 Identities=17% Similarity=0.157 Sum_probs=98.3
Q ss_pred eecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHH
Q 000998 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETL 230 (1194)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 230 (1194)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+..+. ...+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 478999999999999999999999999999998642 2233333322 224566665541 111222211
Q ss_pred HH---hhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000998 231 DF---AGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1194)
Q Consensus 231 ~f---~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1194)
-+ +....+.+. . +.+. ..+++.++..+++. ++....+
T Consensus 214 Gli~~a~~~~~L~~------~------------------fl~~--------~era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------E------------------FLRH--------IARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------H------------------HHHH--------HTSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------H------------------HHHH--------HHHHHhhhEEeCCc--------cCCHHHH
Confidence 11 000000000 0 0000 00011122233332 2233469
Q ss_pred ChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000998 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1194)
Q Consensus 308 SGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~v 378 (1194)
|+||+||+.+|++|...|.++++ +.+|.... ..++.+++..+..+.+++.+..+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999876 55555555444334455554444444455555443
No 243
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.99 E-value=2.1e-11 Score=136.85 Aligned_cols=129 Identities=15% Similarity=0.118 Sum_probs=83.5
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhh----
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW---- 928 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~---- 928 (1194)
+++.++||.|+||||||||.+.|++.... .| . -.+.+.+|+|++.+++. +.++++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C------CCceEEEeccccccCCh-HHHHHHhccccccch
Confidence 36789999999999999999999986431 11 1 02345566999988764 88899887521
Q ss_pred hc---CCCcCcHHHHHHHHHHHHHHcCCCcc--cCCcccCC-CCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCC
Q 000998 929 LR---LPSEIELETQRAFVEEVMELVELTSL--SGALIGLP-GINGLSTEQRKRLTIA--VELVANPSIVFMDEPTSGLD 1000 (1194)
Q Consensus 929 lr---~~~~~~~~~~~~~v~~~l~~l~l~~~--~~~~~~~~-~~~~LSgGqrqrl~ia--~aL~~~p~illLDEPTsgLD 1000 (1194)
+. .|..... +...+.++.+....- ....+..| ....+||||+||+.+| +++ +|+|||+||||+++|
T Consensus 93 ~~~~g~p~a~d~----~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 93 LQGRGLPGTHDM----KLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFN 166 (290)
T ss_dssp GSSSCSTTSBCH----HHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCC
T ss_pred hhhccCcchhHH----HHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCC
Confidence 11 1322222 234455555533200 00000001 1247999999999987 555 899999999999999
Q ss_pred HHH
Q 000998 1001 ARA 1003 (1194)
Q Consensus 1001 ~~~ 1003 (1194)
+..
T Consensus 167 ~~~ 169 (290)
T 1odf_A 167 PIL 169 (290)
T ss_dssp CCC
T ss_pred ccc
Confidence 853
No 244
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.99 E-value=3.8e-13 Score=153.57 Aligned_cols=167 Identities=15% Similarity=0.113 Sum_probs=93.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCC-----CceeeEEEECCccCCCCCC------------------CceEEEE---
Q 000998 161 SRLTLLLGPPSSGKTTLLLALAGRLGHH-----LQVSGKITYNGHGFKEFVP------------------PRTSAYV--- 214 (1194)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~~-----~~~~G~i~~~G~~~~~~~~------------------~~~~~yv--- 214 (1194)
=++++|+|+|||||||||+.|+|..... ....|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3689999999999999999999986210 1248999999987654311 1234555
Q ss_pred ecCCCCCCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCccc
Q 000998 215 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 294 (1194)
Q Consensus 215 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~ 294 (1194)
+|+..+++..+|.||..++... .......... ... .. ..++.++..+++.+.
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~---------~~~---~~---------~~l~~~l~~vd~~~~ 135 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHE---------VLC---QR---------YLLDGVIALVDAVHA 135 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSH---------HHH---HH---------EEEEEEEEEEETTTH
T ss_pred HhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCc---------ccc---Ce---------EEECCEEEEEEHHHH
Confidence 4555445566666666443100 0000000000 000 00 001111222333333
Q ss_pred ccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh
Q 000998 295 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1194)
Q Consensus 295 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1194)
.+... .+|||||||+..+++++.+|+++ ||| ..+.+.++++. .+++|+.++|...++..+
T Consensus 136 ~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~---~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 136 DEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN---ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC---SSSCEEECCSSCCCGGGG
T ss_pred HHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC---CCCeEEEecccCCCHHHH
Confidence 22221 48999999998888888888877 888 67777787763 234455555643333333
Q ss_pred c
Q 000998 375 F 375 (1194)
Q Consensus 375 ~ 375 (1194)
+
T Consensus 196 ~ 196 (318)
T 1nij_A 196 F 196 (318)
T ss_dssp S
T ss_pred h
Confidence 3
No 245
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.99 E-value=3.6e-12 Score=153.70 Aligned_cols=85 Identities=19% Similarity=0.105 Sum_probs=66.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHH
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1194)
..+++++++.+++|+.++|+|||||||||||++|+|.+++. +|.|+++|..--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999876 899999886421222234567777765533456888
Q ss_pred HHHHHhhh
Q 000998 228 ETLDFAGQ 235 (1194)
Q Consensus 228 E~l~f~~~ 235 (1194)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88876655
No 246
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.97 E-value=9.5e-10 Score=128.24 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=73.6
Q ss_pred HHHHHHHHhCCcc-------cccccccC----ccCCCCChhhhhHH------HHHHHHhCC-CcEeEEecCCCCCCHHHH
Q 000998 281 VVEYIMKILGLDT-------CADTLVGD----EMLKGISGGQKKRL------TTGELLVGP-ARVLFMDEISNGLDSSTT 342 (1194)
Q Consensus 281 ~~~~~l~~lgL~~-------~~dt~vg~----~~~~~LSGGqkqRv------sia~al~~~-~~vlllDEptsgLD~~~~ 342 (1194)
.++..++.+++++ ..+..+.+ ..+..+|||||||| ++|++++.+ |++|+|||||+|||+..+
T Consensus 244 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 244 YLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 3456677777765 11222222 33467999999988 567899999 999999999999999999
Q ss_pred HHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000998 343 YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1194)
Q Consensus 343 ~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~ 382 (1194)
..+.+.|+++.. +++++ .++|.. ++...+|++++|+
T Consensus 324 ~~l~~~l~~~~~--~~~vi-~~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVKS--IPQMI-IITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHCCS--CSEEE-EEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHHhcc--CCeEE-EEEChH-HHHhhCCEEEEEE
Confidence 999999987532 34544 455664 4788999999996
No 247
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.97 E-value=1.6e-11 Score=144.29 Aligned_cols=137 Identities=19% Similarity=0.130 Sum_probs=89.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC-------CceEEEEe-----
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVS----- 215 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~----- 215 (1194)
..+|+++ + .++|++++|+|||||||||||++|+|.+.+. +|+|.+.|.++..... .+.++|.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 3478888 4 4899999999999999999999999998775 8999999877642111 12234443
Q ss_pred ----cCCCC--CCC----CCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHH
Q 000998 216 ----QQDWQ--VAE----MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI 285 (1194)
Q Consensus 216 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~ 285 (1194)
|++.. +++ .|+.+++.++..-+..-.. +........++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t------------------------------lh~~~~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST------------------------------LHTNTAVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE------------------------------ECCSSSHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc------------------------------cchhhHHHHHH-H
Confidence 77654 344 5788877664311100000 00000111122 4
Q ss_pred HHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeE
Q 000998 286 MKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329 (1194)
Q Consensus 286 l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~vll 329 (1194)
|..+|++... . ...|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~--~-----~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL--I-----SSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH--H-----HHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH--H-----HHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5677887542 2 23699999999 9999999999876
No 248
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.95 E-value=1.3e-12 Score=153.65 Aligned_cols=147 Identities=15% Similarity=0.069 Sum_probs=95.0
Q ss_pred cccccccccceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh-------hccccee
Q 000998 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARIS 904 (1194)
Q Consensus 832 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~ 904 (1194)
+.+.+..++...+|+++ +. ++|++++|+|||||||||||++|+|.... .+|.|.+.|.++.. ....+.+
T Consensus 146 l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~ 221 (418)
T 1p9r_A 146 LHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRV 221 (418)
T ss_dssp GGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGG
T ss_pred HHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEcccc
Confidence 34444444445678888 43 89999999999999999999999996542 36889888876531 1223345
Q ss_pred eEee---------cCCCC--CCC----CcHHHHHHHHhhhcCC-CcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCC
Q 000998 905 GYCE---------QNDIH--SPG----LTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968 (1194)
Q Consensus 905 gyv~---------Q~~~~--~~~----lTv~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~ 968 (1194)
|+.+ |++.. +.. .|+.+++.++..-+.. ...........+ +.+..+++.... . ...
T Consensus 222 g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~-----~~~ 293 (418)
T 1p9r_A 222 DMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--I-----SSS 293 (418)
T ss_dssp TBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--H-----HHH
T ss_pred CcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--H-----HHH
Confidence 5655 87654 233 6899998875321100 000000011122 345667776543 1 247
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEE
Q 000998 969 LSTEQRKRLTIAVELVANPSIVFM 992 (1194)
Q Consensus 969 LSgGqrqrl~ia~aL~~~p~illL 992 (1194)
|||||+|| ||++|+.+|++..-
T Consensus 294 LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 294 LLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHH--hhhhhcCCCCccCC
Confidence 99999999 99999999998763
No 249
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.95 E-value=1.2e-10 Score=131.81 Aligned_cols=124 Identities=13% Similarity=0.093 Sum_probs=79.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEE---CCccCCCCCC--C-ceEEEEecCCCCC-----CCCCH
Q 000998 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP--P-RTSAYVSQQDWQV-----AEMTV 226 (1194)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~---~G~~~~~~~~--~-~~~~yv~Q~d~~~-----~~lTV 226 (1194)
+.+|++++|+||||||||||+|+|+ .+.+. +|+|.+ +|.+.+.... + +.++|++|+|.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3468999999999999999999999 87765 899999 8877654321 1 2579999998543 67899
Q ss_pred HHHH--HHhhhccCCCCchhhhHHH-HHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcc-cccccccCc
Q 000998 227 RETL--DFAGQCQGVGSKYDMITEL-ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTLVGDE 302 (1194)
Q Consensus 227 ~E~l--~f~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~ 302 (1194)
|++ .|+. . .+. |+ ..+..+ ..+....++++++.+||++ .++...
T Consensus 238 -e~l~~~f~~-~----------~~~~c~---~~~~~~--------------~~e~~~~v~~~l~~~~L~~~~~~~~~--- 285 (302)
T 2yv5_A 238 -REVRNYFRE-F----------LRYQCK---YPDCTH--------------TNEPGCAVKEAVKNGEISCERYKSYL--- 285 (302)
T ss_dssp -GGGGGGCGG-G----------HHHHHH---STTCCS--------------SSCTTCHHHHHHHTTSSCHHHHHHHH---
T ss_pred -HHHHHHHHH-H----------HHccCC---CCCCCC--------------CCCCCCHHHHHHHcCCCCHHHHHHHH---
Confidence 888 4431 0 000 10 000000 0111224788899999985 555544
Q ss_pred cCCCCChhhhhHHHHHH
Q 000998 303 MLKGISGGQKKRLTTGE 319 (1194)
Q Consensus 303 ~~~~LSGGqkqRvsia~ 319 (1194)
+.|||.++|++.|||
T Consensus 286 --~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 286 --KIIKVYLEEIKELCR 300 (302)
T ss_dssp --HHTTCCCTTHHHHSS
T ss_pred --HHHHHHHHHHHHHhc
Confidence 459999999999986
No 250
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.93 E-value=1.5e-10 Score=120.65 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=36.7
Q ss_pred hCCCcEeEEecCCC-CCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhH
Q 000998 322 VGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1194)
Q Consensus 322 ~~~~~vlllDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1194)
+.+|++|+||||++ ++|+.....+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34899999999985 9999999999998887653 356667666555443
No 251
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.92 E-value=3.1e-13 Score=162.97 Aligned_cols=173 Identities=10% Similarity=0.021 Sum_probs=98.0
Q ss_pred eEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCC-------
Q 000998 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS------- 914 (1194)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~------- 914 (1194)
..+++++++.+++|+.++|+|||||||||||++|+|..++ .+|.|.++|.+.-.......++++.|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 3578899999999999999999999999999999998763 4789999886521111123345555443322
Q ss_pred ---------------CCCcHHHHHHHHhhhcCCCc-CcHHHHHHHHHHHHHHcCCCc--ccCCcccC-----CCCCCCCH
Q 000998 915 ---------------PGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMELVELTS--LSGALIGL-----PGINGLST 971 (1194)
Q Consensus 915 ---------------~~lTv~e~l~f~~~lr~~~~-~~~~~~~~~v~~~l~~l~l~~--~~~~~~~~-----~~~~~LSg 971 (1194)
..++..|++.+...+..... .... ....+.++++.+.... +...+... .....+|+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~-Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTL-HAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEE-ECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccc-ccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 23344444332211110000 0000 0001223333332211 11000000 01135799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCc
Q 000998 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC--TIHQPS 1029 (1194)
Q Consensus 972 Gqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~--~~H~~~ 1029 (1194)
|||||+++|. + | |+|||+.....+++.|.++...|+|+++ ++|+.+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ 451 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE 451 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH
Confidence 9999877652 1 7 9999998776666666666555777775 778654
No 252
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.92 E-value=4.9e-11 Score=134.92 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=79.4
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEE---cCccCChh--ccc-ceeeEeecCCCCC-----CCCcHHH
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQE--TFA-RISGYCEQNDIHS-----PGLTVLE 921 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~Q~~~~~-----~~lTv~e 921 (1194)
.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.+.. .+. +.+||++|++.+. +.+|+ |
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 468999999999999999999999 765 45799999 88765432 122 2579999998654 67899 8
Q ss_pred HH--HHHh------hhcCCCcCcHHHHHHHHHHHHHHcCCCc-ccCCcccCCCCCCCCHHHHHHHHHHHH
Q 000998 922 SL--LFSA------WLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVE 982 (1194)
Q Consensus 922 ~l--~f~~------~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~~~~~~~~LSgGqrqrl~ia~a 982 (1194)
++ .|.. ..+.. ....+....++++++.++|.+ ..+... ..|||.++|++.|||+
T Consensus 239 ~l~~~f~~~~~~~c~~~~~--~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDC--THTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTC--CSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCC--CCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 88 4531 12210 011122346889999999975 555443 4699999999999874
No 253
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=1e-09 Score=127.00 Aligned_cols=134 Identities=15% Similarity=0.027 Sum_probs=72.4
Q ss_pred EEEEccCCCChHHHHhhhcC-CCCCCeeEEEEEEcCccCCh-hcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCCCcC
Q 000998 858 TALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEI 935 (1194)
Q Consensus 858 ~al~G~nGaGKSTLl~~L~g-~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~~~~ 935 (1194)
+.|.||||+|||||+++|++ ... +..|.+.++|.+... ......++|++|.+.+..... + .. ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---Cc
Confidence 89999999999999999999 333 236888888865432 112455788888764321110 0 00 00
Q ss_pred cHHHHHHHHHHHHHHcCC-CcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000998 936 ELETQRAFVEEVMELVEL-TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014 (1194)
Q Consensus 936 ~~~~~~~~v~~~l~~l~l-~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l 1014 (1194)
... .+.+.++.+.. ..+.+ .. .||| +..+|+|+++|||++ ||..+...+.+.+.+.
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~-~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDF-QD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred chH----HHHHHHHHHHHhccccc-cc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 010 12233333211 11111 00 3465 788999999999999 9999999999999885
Q ss_pred HhCCCEEEEEecCCc
Q 000998 1015 VNTGRTIVCTIHQPS 1029 (1194)
Q Consensus 1015 ~~~g~tvi~~~H~~~ 1029 (1194)
. .+.++|+++|+++
T Consensus 162 ~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMS 175 (354)
T ss_dssp T-TTEEEEEEESCSC
T ss_pred c-CCCEEEEEeCCHH
Confidence 3 4789999999986
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.87 E-value=4.1e-11 Score=128.08 Aligned_cols=121 Identities=18% Similarity=0.223 Sum_probs=70.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhcc
Q 000998 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQ 237 (1194)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 237 (1194)
.++|++++|+||||||||||+++|+|.+.+. | ..+++|++++.++.. +..+++.... .+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~-~~ 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G---------------LPAEVVPMDGFHLDN-RLLEPRGLLP-RK 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T---------------CCEEEEESGGGBCCH-HHHGGGTCGG-GT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C---------------CceEEEecCCCcCCH-HHHHHhcccc-cC
Confidence 5789999999999999999999999998642 2 136777777665532 2222221000 00
Q ss_pred CCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHH
Q 000998 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317 (1194)
Q Consensus 238 ~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsi 317 (1194)
+....+ +.. .....+..+......++.+.+.. .++||||+||+++
T Consensus 78 ~~~~~~-------------------~~~---------------~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~ 122 (208)
T 3c8u_A 78 GAPETF-------------------DFE---------------GFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGP 122 (208)
T ss_dssp TSGGGB-------------------CHH---------------HHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECT
T ss_pred CCCchh-------------------hHH---------------HHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcC
Confidence 000000 000 01112222211122233444433 3589999999998
Q ss_pred H-HHHhCCCcEeEEecCC
Q 000998 318 G-ELLVGPARVLFMDEIS 334 (1194)
Q Consensus 318 a-~al~~~~~vlllDEpt 334 (1194)
+ ++++.++.++++|||.
T Consensus 123 ~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 123 ECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TCCEEEEEESSTTBCSTT
T ss_pred CCcEEEECCceeccCCch
Confidence 7 7777777777788873
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.86 E-value=1e-11 Score=138.64 Aligned_cols=141 Identities=17% Similarity=0.162 Sum_probs=93.1
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCC-CCCCCC
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQD-WQVAEM 224 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 224 (1194)
.+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.+
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 5899999999999 999999999999999999998753 789999977643321 13456666653 344555
Q ss_pred CHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccC
Q 000998 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1194)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1194)
++.|++.+....++. .. .+ .+....+. ..
T Consensus 107 ~~~Deid~~~~~r~~--------------~~--------------------------~~------~~~~~~~~-----~l 135 (274)
T 2x8a_A 107 IFFDEVDALCPRRSD--------------RE--------------------------TG------ASVRVVNQ-----LL 135 (274)
T ss_dssp EEEETCTTTCC-------------------------------------------------------CTTHHHH-----HH
T ss_pred EeeehhhhhhcccCC--------------Cc--------------------------ch------HHHHHHHH-----HH
Confidence 555555432111000 00 00 00111111 22
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEecCCC------------CCCHHHHHHHHHHH
Q 000998 305 KGISGGQKKRLTTGELLVGPARVLFMDEISN------------GLDSSTTYQIIKYL 349 (1194)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~~~vlllDEpts------------gLD~~~~~~i~~~l 349 (1194)
..|||||+||+.+++|+..+|++| ||++. -.|...+.+|++.+
T Consensus 136 ~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 136 TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 359999999999999999999975 88864 23666777776644
No 256
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.85 E-value=1.9e-11 Score=142.07 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=114.7
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHhcCcC----C-----CCceeeEEEECCccCCC----CCCCceE---EEEecCCCC
Q 000998 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLG----H-----HLQVSGKITYNGHGFKE----FVPPRTS---AYVSQQDWQ 220 (1194)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~----~-----~~~~~G~i~~~G~~~~~----~~~~~~~---~yv~Q~d~~ 220 (1194)
.+++|..++|+|+||||||||+++|+|... + ..+..|.|.++|..+.. ..+++.+ .++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999321 1 12458999998843211 1233333 477787777
Q ss_pred CCCCCHHHHH--HHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCccccccc
Q 000998 221 VAEMTVRETL--DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1194)
Q Consensus 221 ~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1194)
....+..|++ .|-..++.. +.++..+...
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~------ 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF------ 126 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC------
T ss_pred ccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc------
Confidence 7777766555 332211110 0011111111
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhCCC--cEeEEecCCCCCCHHHHHHHHHHHHHH-HhccCCeEEEEEecChhHHHhhc
Q 000998 299 VGDEMLKGISGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHS-TRALDGTTVISLLQPAPEAYELF 375 (1194)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~~--~vlllDEptsgLD~~~~~~i~~~l~~~-~~~~~~t~ii~~~q~~~~~~~~~ 375 (1194)
++..+..+||+. +| +++++|||+.++|.......++.++.. .. .+.+ ++ .|...++.++|
T Consensus 127 -~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~t-i~--sh~~~~~~~l~ 189 (392)
T 1ni3_A 127 -DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANT-LE--MKAKKEEQAII 189 (392)
T ss_dssp -CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCS-SS--HHHHHHHHHHH
T ss_pred -ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCc-cc--cccHHHHHHHH
Confidence 122233467653 88 999999999999999999999988876 43 3333 32 78888999999
Q ss_pred CeEE-EEcCC-eEEEecChh
Q 000998 376 DDVI-LLSEG-QIVYQGPRV 393 (1194)
Q Consensus 376 D~vi-lL~~G-~iv~~G~~~ 393 (1194)
|++. +|.+| ++++.|+.+
T Consensus 190 ~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 190 EKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHhccCCceeecCCCC
Confidence 9999 99999 988877543
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.80 E-value=2.6e-11 Score=129.59 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=77.1
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCCCC-CeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhhcC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~ 931 (1194)
++|+++||+||||||||||+++|+|...+ |...|.|.++|...... ..+++........
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~--------------------~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR--------------------LLEPRGLLPRKGA 79 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHH--------------------HHGGGTCGGGTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHH--------------------HHHHhcccccCCC
Confidence 68999999999999999999999996541 22356666665543221 1111100000000
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000998 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIA-VELVANPSIVFMDEPTSGLDARAAAIVMRT 1010 (1194)
Q Consensus 932 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia-~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 1010 (1194)
+....... ..+.+..+...+..+...... ...+|+||+||+++| ++++.++.++++|||.. ..
T Consensus 80 ~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~ 143 (208)
T 3c8u_A 80 PETFDFEG----FQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RD 143 (208)
T ss_dssp GGGBCHHH----HHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GG
T ss_pred CchhhHHH----HHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HH
Confidence 11111111 122222221111111111111 235899999999987 77788888777888741 11
Q ss_pred HHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 000998 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDE 1038 (1194)
Q Consensus 1011 l~~l~~~g~tvi~~~H~~~~~~~~~~d~ 1038 (1194)
++.. --.+|++.+..+..+.....|
T Consensus 144 l~~~---~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 144 LTAI---WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGT---CSEEEEECCCHHHHHHHHHHH
T ss_pred HHHh---cCEEEEEeCCHHHHHHHHHHH
Confidence 1222 236777777655434444444
No 258
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.79 E-value=1.7e-12 Score=137.84 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=42.8
Q ss_pred HHH-HHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000998 317 TGE-LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1194)
Q Consensus 317 ia~-al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1194)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 445 6788999999999999999999999999888765431 1223 1 1 67899988764
No 259
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.77 E-value=2.5e-08 Score=116.42 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=43.3
Q ss_pred CCCcEeEEecCCCCCCHHHH------------HHHHHHHHHHHhccCCeEEEEEecCh-------------------hHH
Q 000998 323 GPARVLFMDEISNGLDSSTT------------YQIIKYLKHSTRALDGTTVISLLQPA-------------------PEA 371 (1194)
Q Consensus 323 ~~~~vlllDEptsgLD~~~~------------~~i~~~l~~~~~~~~~t~ii~~~q~~-------------------~~~ 371 (1194)
.+|+++++|||++.+|+... .++++.|+++++..+.++|+ +.|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl-v~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV-TNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EEeecccCCccccccCCCccCCchhHH
Confidence 57999999999999997543 56888888888776656555 44541 224
Q ss_pred HhhcCeEEEEcCCe
Q 000998 372 YELFDDVILLSEGQ 385 (1194)
Q Consensus 372 ~~~~D~vilL~~G~ 385 (1194)
.+.+|.++.|..|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999987653
No 260
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.77 E-value=7.3e-12 Score=145.49 Aligned_cols=170 Identities=13% Similarity=0.114 Sum_probs=114.2
Q ss_pred EEeCCcEEEEEccCCCChHHHHhhhcCCC----------CCCeeEEEEEEcCccCCh----hccccee---eEeecCCCC
Q 000998 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRK----------TGGIIEGDIYISGYPKRQ----ETFARIS---GYCEQNDIH 913 (1194)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~~---gyv~Q~~~~ 913 (1194)
.+++|..+||+|+||||||||+|+|+|.. +-.+..|.+.++|..... ...++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 44689999999999999999999999932 113568999998843211 0112222 467777777
Q ss_pred CCCCcHHHHH--HHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCC--CE
Q 000998 914 SPGLTVLESL--LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP--SI 989 (1194)
Q Consensus 914 ~~~lTv~e~l--~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p--~i 989 (1194)
....+..|.+ .|.+.++.. +.++..++..+ + ..+..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d-----~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--D-----AEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--T-----TCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--c-----ceeeeecccc------------Ccchhh
Confidence 7777766655 343333311 11111122211 1 1122345542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCcHHHHHhcCeEE-EEccCc-EEEEeCCCC
Q 000998 990 VFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELL-FMKRGG-ELIYAGPLG 1055 (1194)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~~~~~~~~~d~~~-~l~~gG-~~~~~g~~~ 1055 (1194)
+++|||+.++|+......++.++.+ .+.|.||+ +|... ++.+.||++. +|. .| +.++.|+..
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~-~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLT-ETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHH-TTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhc-cCCceeecCCCC
Confidence 9999999999999999999999988 66678864 99865 5778899998 787 47 777777764
No 261
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.77 E-value=8.8e-09 Score=103.74 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=29.0
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 000998 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1194)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1194)
+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55555 8999999999999999999999998753
No 262
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.73 E-value=2.2e-10 Score=130.09 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=57.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCceeeEEEE---CCccCCCCCCCceEEEEecCCCCCCCCCHHHHHHHh
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITY---NGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~i~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 233 (1194)
++|++++|+||||||||||+++|+|.+. +. +|+|.+ +|...... ..+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8899999999999999999999999887 55 899999 88654211 12346788 776677889999999875
Q ss_pred hhc
Q 000998 234 GQC 236 (1194)
Q Consensus 234 ~~~ 236 (1194)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 263
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.70 E-value=2.1e-09 Score=121.46 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=50.7
Q ss_pred EeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEE---CCccCCCCCC---CceEEEEecCCC----------
Q 000998 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP---PRTSAYVSQQDW---------- 219 (1194)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~---~G~~~~~~~~---~~~~~yv~Q~d~---------- 219 (1194)
+.+.+|++++|+|||||||||||++|+|...+. +|+|.+ +|.++..... .+.++||+|++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 345679999999999999999999999998876 899999 8877654321 135799999874
Q ss_pred ------CCCCCCHHHHHHHh
Q 000998 220 ------QVAEMTVRETLDFA 233 (1194)
Q Consensus 220 ------~~~~lTV~E~l~f~ 233 (1194)
++|++|+ ||+.|.
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHHhccc-ccCcCC
Confidence 5788888 888775
No 264
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.70 E-value=1.4e-10 Score=133.35 Aligned_cols=154 Identities=20% Similarity=0.219 Sum_probs=95.6
Q ss_pred eeeecceEeEeCC-------eEEEEEcCCCCcHHHHHHHHhcCcCCCC-ceeeEEEECCccCCCC---CCCceEEEEecC
Q 000998 149 TILDDLSGIIRPS-------RLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKEF---VPPRTSAYVSQQ 217 (1194)
Q Consensus 149 ~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~i~~~G~~~~~~---~~~~~~~yv~Q~ 217 (1194)
.+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4677777777765 7899999999999999999999874321 3467666665443211 124568999998
Q ss_pred CCCCCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccc
Q 000998 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1194)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1194)
+.+.+ ++.|+|.......+. +.+.. . ......++..+..++|.. +++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~----~i~~~------------~--------------~~~~~~i~~~l~~~~li~-at~ 158 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQI----DIMIG------------K--------------GPSAKSIRIDIQPFTLVG-ATT 158 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-EES
T ss_pred hhcCH--HHHHHHHHHHHhccc----ceeec------------c--------------CcccccccccCCCeEEEE-ecC
Confidence 76554 788888543221110 00000 0 000011333344455543 455
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhcc
Q 000998 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356 (1194)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~ 356 (1194)
..+ .||+|+|+|+.++ .+||+.+..++.+.|++.++..
T Consensus 159 ~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~ 196 (334)
T 1in4_A 159 RSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLM 196 (334)
T ss_dssp CGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT
T ss_pred Ccc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc
Confidence 443 5999999998554 7888888999999998877643
No 265
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.69 E-value=3.6e-12 Score=135.30 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=42.0
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEc
Q 000998 979 IAV-ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1194)
Q Consensus 979 ia~-aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 1043 (1194)
+++ +++.+|++++|||||+++|..+...|.+.|.+..+. +...|.+ ..||.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 445 677888888889999999999999999988876542 2335622 4689988775
No 266
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=1.4e-08 Score=117.46 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=67.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc-CcCCCCceeeEEEECCccCCCCC-CCceEEEEecCCCCCCCCCHHHHHHHhhhccCCCC
Q 000998 164 TLLLGPPSSGKTTLLLALAG-RLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGS 241 (1194)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G-~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 241 (1194)
++|.||||+|||||+++|+| .+.+. .|.+.++|.+..... .+..++|++|.+.+....+- .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHhh----------cCCcc
Confidence 89999999999999999999 55554 799999987654321 23567888887643111000 00000
Q ss_pred chhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHHHHH
Q 000998 242 KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321 (1194)
Q Consensus 242 ~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al 321 (1194)
. ..++..++.+......+..+ .+|| +
T Consensus 106 ~-------------------------------------~~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------------------------IVIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp H-------------------------------------HHHHHHHHHHTTTTC---------------------------
T ss_pred h-------------------------------------HHHHHHHHHHHHhccccccc------cccc-----------c
Confidence 0 00111122211110001110 3566 7
Q ss_pred hCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh
Q 000998 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1194)
Q Consensus 322 ~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1194)
.++|+++++|||++ ||..+...+.+.+.+.. .++++|.++|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCEEEEEeCCHH
Confidence 78999999999999 99999999999998753 3455655666543
No 267
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.68 E-value=2.9e-09 Score=119.67 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=44.4
Q ss_pred EeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEE---CCccCCCCCC-Cce-EEEEecCCCCCC----CCCH
Q 000998 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP-PRT-SAYVSQQDWQVA----EMTV 226 (1194)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~---~G~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV 226 (1194)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+.... .+. .+|+.|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 556789999999999999999999999988765 899998 7866543221 112 699999987654 6899
Q ss_pred HHHHH
Q 000998 227 RETLD 231 (1194)
Q Consensus 227 ~E~l~ 231 (1194)
|+|.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8883
No 268
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.67 E-value=2.9e-09 Score=116.36 Aligned_cols=68 Identities=13% Similarity=0.202 Sum_probs=46.9
Q ss_pred HHHHHHHh--hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHH-------HHHhcCeEEEEcc
Q 000998 977 LTIAVELV--ANPSIVFMDEPTSGL--DARAAAIVMRTVRNIV-NTGRTIVCTIHQPSID-------IFESFDELLFMKR 1044 (1194)
Q Consensus 977 l~ia~aL~--~~p~illLDEPTsgL--D~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~-------~~~~~d~~~~l~~ 1044 (1194)
...++.++ .+|+++++|+|++.+ |+.....++..+.+++ +.|.|||+++|..... +.+.+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 579999999999988 5544455555555554 5699999999976521 3467899999974
No 269
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.66 E-value=1.3e-10 Score=133.52 Aligned_cols=152 Identities=15% Similarity=0.086 Sum_probs=92.1
Q ss_pred cceEEeeeeeEEEeCC-------cEEEEEccCCCChHHHHhhhcCCCCC--CeeEEEEEEcCccCCh---hcccceeeEe
Q 000998 840 DRLQLLVNVTGAFRPG-------VLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQ---ETFARISGYC 907 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~G-------e~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv 907 (1194)
++..+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.++.. ...++.++|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3345677888888776 88999999999999999999985411 1345655554443211 1123568999
Q ss_pred ecCCCCCCCCcHHHHHHHHhhhcCCCcC--cHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhh
Q 000998 908 EQNDIHSPGLTVLESLLFSAWLRLPSEI--ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1194)
Q Consensus 908 ~Q~~~~~~~lTv~e~l~f~~~lr~~~~~--~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~ 985 (1194)
+|.+.+.+ ++.|++........ .++ ......+.++..+..+++.. +... +..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~----- 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII----- 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSC-CCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-----
T ss_pred cchhhcCH--HHHHHHHHHHHhcc-cceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-----
Confidence 99877665 78888854322111 010 01111122333333344433 2222 247999999998654
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000998 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1194)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~ 1016 (1194)
.+||+.+...+.+.|++.++
T Consensus 175 -----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 -----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp -----------EECCCCCHHHHHHHHHHHHH
T ss_pred -----------eeCCCCCHHHHHHHHHHHHH
Confidence 77888888899999998764
No 270
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.64 E-value=1.5e-09 Score=122.11 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=63.7
Q ss_pred EeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEE---cCccCChh-cccce-eeEeecCCCCCC----CCcHHHH
Q 000998 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQE-TFARI-SGYCEQNDIHSP----GLTVLES 922 (1194)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~Q~~~~~~----~lTv~e~ 922 (1194)
+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|...+.. ...+. .||++|.+.+.+ .+|+ |+
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 45799999999999999999999999765 45799988 77654321 12222 799999987765 6789 88
Q ss_pred HH--HHhh--h----cCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHH
Q 000998 923 LL--FSAW--L----RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 975 (1194)
Q Consensus 923 l~--f~~~--l----r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrq 975 (1194)
+. |... + +...-....+....++++++.+++.+.+.... ..++.|++|
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 83 3311 1 11110011122345788999999876432221 246667665
No 271
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.64 E-value=3.4e-10 Score=128.49 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=58.8
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEE---cCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhh
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL 929 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~l 929 (1194)
++|+++||+||||||||||+++|+|.....+.+|+|.+ ||...... .++.+|++ |...+.+.+|+.+++.+...+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 89999999999999999999999996431023688988 98765432 23457888 777777889999999876554
Q ss_pred c
Q 000998 930 R 930 (1194)
Q Consensus 930 r 930 (1194)
+
T Consensus 156 ~ 156 (308)
T 1sq5_A 156 K 156 (308)
T ss_dssp T
T ss_pred h
Confidence 3
No 272
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.62 E-value=1.3e-08 Score=121.98 Aligned_cols=178 Identities=13% Similarity=0.159 Sum_probs=105.4
Q ss_pred EEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEE-EEEEcCccCChhccc-ceeeEeecCCCCCCCCcHH
Q 000998 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIYISGYPKRQETFA-RISGYCEQNDIHSPGLTVL 920 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~-~~~gyv~Q~~~~~~~lTv~ 920 (1194)
..|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+-+...+..... |..+... ....
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH-
Confidence 356677778999999999999999999999998874320 012 233322222111111 1000000 0000
Q ss_pred HHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCC
Q 000998 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV--ANPSIVFMDEPTSG 998 (1194)
Q Consensus 921 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPTsg 998 (1194)
+. ++.. .....+ ...+.++++.++..++. +.. ..++|.+|.+ ..++.++ .+|+++++|+++..
T Consensus 261 ~~------l~~g-~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QN------LRTG-KLTPED-WGKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HH------HHTS-CCCHHH-HHHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HH------HhcC-CCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 00 1111 122222 23344555555433322 111 1368999987 5667776 67999999999987
Q ss_pred CC--------HHHHHHHHHHHHHHHhC-CCEEEEEec---------C--CcH-------HHHHhcCeEEEEccC
Q 000998 999 LD--------ARAAAIVMRTVRNIVNT-GRTIVCTIH---------Q--PSI-------DIFESFDELLFMKRG 1045 (1194)
Q Consensus 999 LD--------~~~~~~i~~~l~~l~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~~~~l~~g 1045 (1194)
.+ ......+.+.|+.++++ |.+||+++| + |.. .+...+|.+++|.++
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 74 23446778888888755 999999999 2 431 355679999999864
No 273
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.62 E-value=2.8e-11 Score=135.08 Aligned_cols=128 Identities=15% Similarity=0.106 Sum_probs=86.3
Q ss_pred eEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh---cccceeeEeecCC-CCCCCC
Q 000998 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFARISGYCEQND-IHSPGL 917 (1194)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~-~~~~~l 917 (1194)
..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45677889999999 99999999999999999999654 26899999765321 2234577888864 455666
Q ss_pred cHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000998 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1194)
Q Consensus 918 Tv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTs 997 (1194)
++.|++.+.+..+. .. ... .+....+.+. ..|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~-----~~----~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRS-----DR----ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccC-----CC----cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 77776654221110 00 000 0112222222 369999999999999999999975 88753
No 274
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.62 E-value=1.3e-08 Score=115.09 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=63.7
Q ss_pred EeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEE---cCccCChh--cc-cceeeEeecCCC-------------
Q 000998 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQE--TF-ARISGYCEQNDI------------- 912 (1194)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~-~~~~gyv~Q~~~------------- 912 (1194)
+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|.+.... .+ .+.+||++|.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 34689999999999999999999999876 46899999 88765421 11 235799999974
Q ss_pred ---CCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCC-cccCCc
Q 000998 913 ---HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGAL 960 (1194)
Q Consensus 913 ---~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~ 960 (1194)
++|.+|+ ||+.|..... . .+....+.++++.++|. +..+..
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~-~-----~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNH-V-----DEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCS-S-----SCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcC-C-----CCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5788899 9888753211 1 12234578899999985 444443
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.57 E-value=4.7e-08 Score=110.17 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=77.9
Q ss_pred ceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHHHHh
Q 000998 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233 (1194)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 233 (1194)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+. . .. ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~----------------~--r~-~a~eq---- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADT----------------F--RA-AAIEQ---- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECT----------------T--CH-HHHHH----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccc----------------c--cH-HHHHH----
Confidence 45567899999999999999999999999988653 56665544321 0 00 00011
Q ss_pred hhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhh
Q 000998 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 313 (1194)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkq 313 (1194)
...+++.+|++. + ...|||+.+
T Consensus 151 ------------------------------------------------L~~~~~~~gl~~-----~-----~~~s~~~~~ 172 (306)
T 1vma_A 151 ------------------------------------------------LKIWGERVGATV-----I-----SHSEGADPA 172 (306)
T ss_dssp ------------------------------------------------HHHHHHHHTCEE-----E-----CCSTTCCHH
T ss_pred ------------------------------------------------HHHHHHHcCCcE-----E-----ecCCccCHH
Confidence 112334455542 1 247899999
Q ss_pred HH---HHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHh
Q 000998 314 RL---TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1194)
Q Consensus 314 Rv---sia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~ 354 (1194)
++ ++++++..+++++++|+|.. ......+++.|+.+.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999974 3445566666665543
No 276
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.54 E-value=2.1e-08 Score=119.13 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=48.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~ 204 (1194)
..+|+|+|+.+++ ++++|+|||||||||||++|+|.+.|. +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 3579999999999 999999999999999999999999886 8999999987654
No 277
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.53 E-value=2.2e-07 Score=106.85 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCcH-----
Q 000998 975 KRLTIAVELVAN--PSIVFMDEPTSGL----------DA---RAAAIVMRTVRNI----VNTGRTIVCTIHQPSI----- 1030 (1194)
Q Consensus 975 qrl~ia~aL~~~--p~illLDEPTsgL----------D~---~~~~~i~~~l~~l----~~~g~tvi~~~H~~~~----- 1030 (1194)
+-+.++++++.+ |+++++|||++.+ |+ ..++.+.+.++++ .+.|.|||+++|-.+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223445555555 3459999999996431
Q ss_pred ----------HHHHhcCeEEEEccCcEEEEeCC
Q 000998 1031 ----------DIFESFDELLFMKRGGELIYAGP 1053 (1194)
Q Consensus 1031 ----------~~~~~~d~~~~l~~gG~~~~~g~ 1053 (1194)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 13456888888875 44444444
No 278
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.53 E-value=7e-09 Score=128.67 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=99.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCC---------
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD--------- 218 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d--------- 218 (1194)
..++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+.. ...++|+++..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~--~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDEN--MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTT--SCEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCccccc--CCcEEEEecchHHHHHHHHH
Confidence 35789999999999999999999999999999999998764 248888888766543 34588887643
Q ss_pred -------------CCCCCCCHHHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHH
Q 000998 219 -------------WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI 285 (1194)
Q Consensus 219 -------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~ 285 (1194)
+.+..+++.+|+... .|...+ .+-+ ... ....
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~-~~~~~~--------------------~~~v---------~~~-----~~~~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVD-NCGRTK--------------------APFI---------DAT-----GAHA 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEEC-CTTCSS--------------------CCEE---------ECT-----TCCH
T ss_pred Hhhccchhhhhhcccccccccccceeec-cccCCC--------------------CCEE---------EcC-----CCCH
Confidence 222223333332110 000000 0000 000 0001
Q ss_pred HHHhCCcccccccccCccCCCCChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHH
Q 000998 286 MKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1194)
Q Consensus 286 l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~ 351 (1194)
-+.+|.-..... ...++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~~-----~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDPF-----QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCCC---------CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEechh-----hcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 122332211111 113699999999999999999999999999998 898888877777763
No 279
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.50 E-value=3.3e-08 Score=111.39 Aligned_cols=113 Identities=20% Similarity=0.231 Sum_probs=73.7
Q ss_pred eeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHh
Q 000998 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSA 927 (1194)
Q Consensus 848 vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~ 927 (1194)
+++..++|++++|+|+|||||||++..|++.... ..|+|.+.+.+... + ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r-----------------~--~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFR-----------------A--AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTC-----------------H--HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEcccccc-----------------H--HHHHH-----
Confidence 3444578999999999999999999999986431 23566665443210 0 01111
Q ss_pred hhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000998 928 WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL---TIAVELVANPSIVFMDEPTSGLDARAA 1004 (1194)
Q Consensus 928 ~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl---~ia~aL~~~p~illLDEPTsgLD~~~~ 1004 (1194)
.....+.+++.- ....|+|+.+++ +|++++..+|+++++|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 122333344432 124689999999 89999999999999999974 3344
Q ss_pred HHHHHHHHHHH
Q 000998 1005 AIVMRTVRNIV 1015 (1194)
Q Consensus 1005 ~~i~~~l~~l~ 1015 (1194)
..+++.++++.
T Consensus 202 ~~l~~eL~~l~ 212 (306)
T 1vma_A 202 KNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55666565543
No 280
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.50 E-value=2.5e-07 Score=104.07 Aligned_cols=118 Identities=19% Similarity=0.118 Sum_probs=79.0
Q ss_pred eeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHH
Q 000998 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1194)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f 925 (1194)
+++++. +|++++++|+||+||||++..|++... ...|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh------------------HH-HHH--
Confidence 577887 999999999999999999999999643 12467777665421100 00 000
Q ss_pred HhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHH
Q 000998 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP-TSGLDARAA 1004 (1194)
Q Consensus 926 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP-TsgLD~~~~ 1004 (1194)
..+.+..++.-+... ..-+..+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 011223344322110 11244456788999988899999999999 999998888
Q ss_pred HHHHHHHHHH
Q 000998 1005 AIVMRTVRNI 1014 (1194)
Q Consensus 1005 ~~i~~~l~~l 1014 (1194)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 7777776654
No 281
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.49 E-value=4.5e-07 Score=98.79 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=42.5
Q ss_pred CCCcEeEEecCCCCC--CHHHHHHHHHHHHHHHhccCCeEEEEEecChhH--------HHhhcCeEEEEcC
Q 000998 323 GPARVLFMDEISNGL--DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE--------AYELFDDVILLSE 383 (1194)
Q Consensus 323 ~~~~vlllDEptsgL--D~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~--------~~~~~D~vilL~~ 383 (1194)
.+|+++++|+|++.+ |.....+++..|.+.++..+.++++ ++|...+ +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 6655566777777776655555554 5555544 4678899999964
No 282
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.49 E-value=2e-07 Score=104.82 Aligned_cols=142 Identities=14% Similarity=0.149 Sum_probs=86.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhccC
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQG 238 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 238 (1194)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++.. ..++.|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 579999999999999999999999987542 34 24677776652 3455555543211
Q ss_pred CCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhhhhHHHHH
Q 000998 239 VGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318 (1194)
Q Consensus 239 ~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia 318 (1194)
.+|++.. + ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1122210 0 012 223355555
Q ss_pred HHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhc--cCCeEEEE-EecChhHHHhhcCeEEEEcCCeEEEe
Q 000998 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA--LDGTTVIS-LLQPAPEAYELFDDVILLSEGQIVYQ 389 (1194)
Q Consensus 319 ~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~--~~~t~ii~-~~q~~~~~~~~~D~vilL~~G~iv~~ 389 (1194)
+ +.+++++++| |+|+|+.....+.+..+ +... ...++++. ..|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~-~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKE-TIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHH-HSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHH-HHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 99999876654444333 3211 11223332 35666777777787766777777753
No 283
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.43 E-value=2.3e-07 Score=104.29 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=87.1
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP 932 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~ 932 (1194)
++|++++|+|+||+||||++..|++.... ..| +.+.++.++.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHHH----
Confidence 47899999999999999999999985431 123 12455665542 2345555543211
Q ss_pred CcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 000998 933 SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1194)
Q Consensus 933 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1012 (1194)
..++... ...+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 159 -----------------~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 159 -----------------LLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp -----------------TTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred -----------------hcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 1122110 01222 22344444 45999999999 99999876655544443
Q ss_pred HHH---hCCCEEEE-EecCCcHHHHHhcCeEEEEccCcEEEEeC-CCCCchhHHHHHHHhc
Q 000998 1013 NIV---NTGRTIVC-TIHQPSIDIFESFDELLFMKRGGELIYAG-PLGSKSCELIKYFEAV 1068 (1194)
Q Consensus 1013 ~l~---~~g~tvi~-~~H~~~~~~~~~~d~~~~l~~gG~~~~~g-~~~~~~~~~~~~f~~~ 1068 (1194)
-+. ..+.++|+ ++|... ++.+.++++..+..+| ++... +.......+++.....
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVltk~D~~~~~g~~~~~~~~~ 265 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIFTKIDETTSLGSVFNILAES 265 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEEECTTTCSCCHHHHHHHHTC
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEEeCCCcccchhHHHHHHHHH
Confidence 322 11333444 378753 4556667655555444 44432 1111223455655554
No 284
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.43 E-value=1.4e-08 Score=107.77 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=49.1
Q ss_pred eEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC---CCceEEEEecCCCCCCCCCHHHHHH
Q 000998 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEMTVRETLD 231 (1194)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1194)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56778999999999999999999999999863 2445554332221 2345789999887777777666654
Q ss_pred H
Q 000998 232 F 232 (1194)
Q Consensus 232 f 232 (1194)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
No 285
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.42 E-value=4.1e-07 Score=108.84 Aligned_cols=183 Identities=20% Similarity=0.186 Sum_probs=108.6
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCH
Q 000998 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1194)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1194)
..+.|+++.+-+++|++++|.|+||+|||||+..+++..... .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 356799999999999999999999999999999998765321 22 134555532 343
Q ss_pred HHHHHHh-hhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 000998 227 RETLDFA-GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1194)
Q Consensus 227 ~E~l~f~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1194)
.+...-. +...+.. .+ .+ ..+...+.+. .++...++.++..+.. +-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~--~~---~l-----~~g~l~~~~~---------------~~~~~a~~~l~~~~l~---i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNIN--AQ---NL-----RTGKLTPEDW---------------GKLTMAMGSLSNAGIY---IDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCC--HH---HH-----HTSCCCHHHH---------------HHHHHHHHHHHSSCEE---EEC--CT
T ss_pred HHHHHHHHHHHcCCC--HH---HH-----hcCCCCHHHH---------------HHHHHHHHHHhcCCEE---EEC--CC
Confidence 3322110 0000000 00 00 0010111111 1233344444432221 111 13
Q ss_pred CCChhhhhHHHHHHHHh--CCCcEeEEecCCCCCCH--------HHHHHHHHHHHHHHhccCCeEEEEEec---------
Q 000998 306 GISGGQKKRLTTGELLV--GPARVLFMDEISNGLDS--------STTYQIIKYLKHSTRALDGTTVISLLQ--------- 366 (1194)
Q Consensus 306 ~LSGGqkqRvsia~al~--~~~~vlllDEptsgLD~--------~~~~~i~~~l~~~~~~~~~t~ii~~~q--------- 366 (1194)
++|++|.+ +.++.+. .+|+++++|+++...++ .....+.+.|+.+++..+.++|+ ++|
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~~ 371 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQRQ 371 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC-
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccCC
Confidence 58999986 5666665 68999999999998743 23367888899888776555554 566
Q ss_pred ---Ch-------hHHHhhcCeEEEEcCCeE
Q 000998 367 ---PA-------PEAYELFDDVILLSEGQI 386 (1194)
Q Consensus 367 ---~~-------~~~~~~~D~vilL~~G~i 386 (1194)
|. ..+.+.+|.|++|+.++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987653
No 286
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.42 E-value=4.2e-09 Score=125.96 Aligned_cols=166 Identities=13% Similarity=0.089 Sum_probs=91.5
Q ss_pred eeeEEEeCCcEEEEEccCCCChHHHHhhhcC--CCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCC-CC-CcHHHH
Q 000998 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS-PG-LTVLES 922 (1194)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~-~~-lTv~e~ 922 (1194)
.+++.+..+..+.|.|+|||||||++++|.. .... ..|++.+.+.+.+...+.. | ..-+.+. +- -.+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhhh---h-ccCCcccceeecCHHHH
Confidence 4667778899999999999999999999865 1111 1233433333322111110 0 0001111 00 112221
Q ss_pred HHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHH----------HHHHHHhhCCC-EEE
Q 000998 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL----------TIAVELVANPS-IVF 991 (1194)
Q Consensus 923 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl----------~ia~aL~~~p~-ill 991 (1194)
... ++. ...+.+++ .+.+...|+.++.+..-.. ...+|+||+|+. ++|+++...|. +++
T Consensus 233 ~~~---L~~----~~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANA---LRW----CVNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHH---HHH----HHHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHH---HHH----HHHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 111 110 11222233 3677777877654321000 024677877642 35566677898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEecCCc
Q 000998 992 MDEPTSGLDARAAAIVMRTVRNIVNT----GRTIVCTIHQPS 1029 (1194)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~----g~tvi~~~H~~~ 1029 (1194)
+||+++-+|.. ...+.+.+.++++. |.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999988843 34566666666432 779999999998
No 287
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.41 E-value=1.1e-10 Score=130.79 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=81.5
Q ss_pred ceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeeEeecCCC-CCCC
Q 000998 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPG 916 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~ 916 (1194)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ....+.+++++|... ..+.
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 345788999999999 89999999999999999998654 4778888765321 112234567777643 4567
Q ss_pred CcHHHHHHHHhhhcCCC-cCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000998 917 LTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1194)
Q Consensus 917 lTv~e~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~i 989 (1194)
+++.|++...+..+... .....+..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 78888874322111100 000111122222222 24899999999999999998875
No 288
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.41 E-value=3.2e-08 Score=103.87 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000998 975 KRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014 (1194)
Q Consensus 975 qrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l 1014 (1194)
+.+.+|++++.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4467899999999999999 9999999999999888653
No 289
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.39 E-value=1.4e-10 Score=127.79 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=80.4
Q ss_pred ceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeeEeecCCC-CCCC
Q 000998 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPG 916 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~ 916 (1194)
...+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ....+.+++++|... ..+.
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 345788999999999 99999999999999999998653 4778888764321 112234567777643 4567
Q ss_pred CcHHHHHHHHhhhcCCC-cCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000998 917 LTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1194)
Q Consensus 917 lTv~e~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~i 989 (1194)
+++.|++...+..+... .....+..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 77777774322211100 001112222233332 24789999999999999999876
No 290
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.38 E-value=1.6e-06 Score=97.38 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=79.0
Q ss_pred ecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHHH
Q 000998 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1194)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1194)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+... ..++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~------------------~~~~-~ql- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR------------------PAAR-EQL- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC------------------HHHH-HHH-
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc------------------HhHH-HHH-
Confidence 678888 99999999999999999999999988643 6777766543210 0000 000
Q ss_pred HhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCCCChhh
Q 000998 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1194)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1194)
..+.+..|++.... + .+-.-.+
T Consensus 146 ---------------------------------------------------~~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 146 ---------------------------------------------------RLLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ---------------------------------------------------HHHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ---------------------------------------------------HHhcccCCeEEEEc---C----CCCCHHH
Confidence 00112234432210 0 0123334
Q ss_pred hhHHHHHHHHhCCCcEeEEecC-CCCCCHHHHHHHHHHHHHH
Q 000998 312 KKRLTTGELLVGPARVLFMDEI-SNGLDSSTTYQIIKYLKHS 352 (1194)
Q Consensus 312 kqRvsia~al~~~~~vlllDEp-tsgLD~~~~~~i~~~l~~~ 352 (1194)
-+|.+++++...+++++++|+| +.|+|......+.+..+..
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 5688999988889999999999 9999988877777766643
No 291
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.37 E-value=1.8e-08 Score=106.79 Aligned_cols=68 Identities=21% Similarity=0.160 Sum_probs=43.9
Q ss_pred eEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeeEeecCCCCCCCCcHHHH
Q 000998 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLES 922 (1194)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~ 922 (1194)
|+++++|++++|+||||||||||+++|+|..+ .+.+++..... ....+.++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 46678999999999999999999999999743 24444433221 1124457899987655544444433
No 292
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.35 E-value=4.2e-08 Score=116.48 Aligned_cols=51 Identities=22% Similarity=0.134 Sum_probs=45.6
Q ss_pred EEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCC
Q 000998 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 896 (1194)
.+|++||+++++ +++||+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 468899999999 9999999999999999999999766 45799999998753
No 293
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.33 E-value=7e-09 Score=128.68 Aligned_cols=161 Identities=15% Similarity=0.116 Sum_probs=98.9
Q ss_pred cceEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCC-------
Q 000998 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI------- 912 (1194)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~------- 912 (1194)
+...+++++++.+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+... ....++||++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHH
Confidence 4556888999999999999999999999999999999976532 23788888876532 3445788876431
Q ss_pred ---------------CCCCCcHHHHHHHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHH
Q 000998 913 ---------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL 977 (1194)
Q Consensus 913 ---------------~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl 977 (1194)
.+..+++.+|+.....-..+...-.. . ....-++++..+..... ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCccccccccc
Confidence 11122222222110000000000000 0 00011122221111111 146999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000998 978 TIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013 (1194)
Q Consensus 978 ~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1013 (1194)
..++....++.+|||||... |++.....+.+.|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899888888888874
No 294
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.32 E-value=1.9e-09 Score=120.62 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=53.4
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCC---CceEEEEecCCC-CCCCC
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW-QVAEM 224 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 224 (1194)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++..... .+.+++++|... ..+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 5799999999999 99999999999999999999874 6888888765432211 122445555432 34445
Q ss_pred CHHHHHH
Q 000998 225 TVRETLD 231 (1194)
Q Consensus 225 TV~E~l~ 231 (1194)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 5555553
No 295
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.31 E-value=1.8e-09 Score=118.91 Aligned_cols=47 Identities=36% Similarity=0.541 Sum_probs=41.5
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccC
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~ 202 (1194)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 5799999999999 99999999999999999999764 68888887654
No 296
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.31 E-value=1.1e-07 Score=99.63 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=36.2
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHH
Q 000998 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1194)
Q Consensus 307 LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~ 351 (1194)
|..-..+.+.+|++++.+|+++++| ||+||.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4433345688999999999999999 999999999999998865
No 297
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.22 E-value=1.2e-06 Score=100.66 Aligned_cols=30 Identities=37% Similarity=0.496 Sum_probs=26.7
Q ss_pred EeEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
+-+++|+++.|.||||||||||+..++...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999988887654
No 298
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.22 E-value=7.4e-07 Score=102.12 Aligned_cols=31 Identities=35% Similarity=0.402 Sum_probs=28.2
Q ss_pred EeEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
+-+++|+++.|.||||||||||+..+++...
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999998754
No 299
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.21 E-value=6.9e-07 Score=94.11 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000998 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015 (1194)
Q Consensus 977 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~ 1015 (1194)
...|++++.+|.++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999 99999999999988887653
No 300
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.20 E-value=1.9e-07 Score=111.59 Aligned_cols=165 Identities=12% Similarity=0.038 Sum_probs=86.6
Q ss_pred ceEeEeCCeEEEEEcCCCCcHHHHHHHHhc-CcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCC--CHHHHH
Q 000998 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAG-RLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEM--TVRETL 230 (1194)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G-~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E~l 230 (1194)
+++.+..+..++|.|++||||||+|++|.. .+... ..|+|.+.+.+.+... .+.-..+|++ +|.++.
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~e--------l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLE--------LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSG--------GGGGTTCTTBSSSCBCSH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhh--------hhhhccCCcccceeecCH
Confidence 677888899999999999999999999875 22211 1355555444322110 0000012221 222222
Q ss_pred HHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCccccc--ccccCccCCCCC
Q 000998 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD--TLVGDEMLKGIS 308 (1194)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~d--t~vg~~~~~~LS 308 (1194)
..+.+. +. .+.. +.+.+ ...++..|+.+..+ ..+. ..+|
T Consensus 230 ~~a~~~---------L~-~~~~------------------------EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s 270 (512)
T 2ius_A 230 KDAANA---------LR-WCVN------------------------EMERR-YKLMSALGVRNLAGYNEKIA----EADR 270 (512)
T ss_dssp HHHHHH---------HH-HHHH------------------------HHHHH-HHHHHHTTCSSHHHHHHHHH----HHHH
T ss_pred HHHHHH---------HH-HHHH------------------------HHHHH-HHHHHHcCCccHHHHHHHHH----HHhh
Confidence 211110 00 0000 01122 24566777765332 1121 2489
Q ss_pred hhhhhHH----------HHHHHHhCCCc-EeEEecCCCCCCHHHHHHHHHHHHHHHh---ccCCeEEEEEecChh
Q 000998 309 GGQKKRL----------TTGELLVGPAR-VLFMDEISNGLDSSTTYQIIKYLKHSTR---ALDGTTVISLLQPAP 369 (1194)
Q Consensus 309 GGqkqRv----------sia~al~~~~~-vlllDEptsgLD~~~~~~i~~~l~~~~~---~~~~t~ii~~~q~~~ 369 (1194)
|||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++++ ..|-++| ..+|...
T Consensus 271 ~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LI-laTQrp~ 343 (512)
T 2ius_A 271 MMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLV-LATQRPS 343 (512)
T ss_dssp TTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEE-EEESCCC
T ss_pred cCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEE-EEecCCc
Confidence 9998863 24556677887 89999999998843 3445555555543 3333444 4555543
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.17 E-value=4.4e-07 Score=98.27 Aligned_cols=38 Identities=32% Similarity=0.261 Sum_probs=22.9
Q ss_pred EEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhc-CCCC
Q 000998 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA-GRKT 880 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g~~~ 880 (1194)
+..+++|+++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4667999999999999999999999999999999 9754
No 302
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.16 E-value=4.6e-07 Score=98.10 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=23.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHh-cCcCC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALA-GRLGH 187 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~-G~l~~ 187 (1194)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35789999999999999999999999999999999 98743
No 303
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.14 E-value=9.7e-08 Score=102.71 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=40.3
Q ss_pred eEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC-----------CCceEEEEecC
Q 000998 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----------PPRTSAYVSQQ 217 (1194)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-----------~~~~~~yv~Q~ 217 (1194)
++.+.+ ++++|+|||||||||||++|+|.+.+. +|+|.++|.++.... .+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999876 899999998762211 13568888874
No 304
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.05 E-value=2.9e-06 Score=98.14 Aligned_cols=150 Identities=16% Similarity=0.138 Sum_probs=86.5
Q ss_pred CcE-EEEEccCCCChHHHHhhhcCCCCC---------CeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHH---H
Q 000998 855 GVL-TALVGVSGAGKTTLMDVLAGRKTG---------GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL---E 921 (1194)
Q Consensus 855 Ge~-~al~G~nGaGKSTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~---e 921 (1194)
|-. ++|+|++|||||||++.|+|.... ++..|.+.++|.++ .+....|++.+.+.. .+. .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~~----lve~f~~ 250 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPPQ----IVDAFFV 250 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCGG----GHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCHH----HHHHHHH
Confidence 444 899999999999999999996431 14578899988643 223345665543221 111 1
Q ss_pred HHHHH--hh--hc--CCCcCc--HHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHH----HHH-hhCCC
Q 000998 922 SLLFS--AW--LR--LPSEIE--LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIA----VEL-VANPS 988 (1194)
Q Consensus 922 ~l~f~--~~--lr--~~~~~~--~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia----~aL-~~~p~ 988 (1194)
.+... +. +. -..+.. ..+..+.+.++++.+++.+..--.+.. ....+|+++++++.++ +++ ..+|+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 11100 00 00 011111 223334456777777765443111111 1234687888888877 554 33444
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000998 989 IVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1194)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~ 1016 (1194)
+ +|+|++|......+.+.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999887653
No 305
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.05 E-value=1.2e-07 Score=101.91 Aligned_cols=59 Identities=19% Similarity=0.115 Sum_probs=39.2
Q ss_pred eEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh-----------hcccceeeEeecC
Q 000998 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----------ETFARISGYCEQN 910 (1194)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~Q~ 910 (1194)
++++.+ ++++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 8999999999999999999999765 346888888876521 1134568899884
No 306
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.05 E-value=3.4e-06 Score=97.52 Aligned_cols=158 Identities=17% Similarity=0.046 Sum_probs=86.6
Q ss_pred CCeE-EEEEcCCCCcHHHHHHHHhcCcCCC--------CceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCH---H
Q 000998 160 PSRL-TLLLGPPSSGKTTLLLALAGRLGHH--------LQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV---R 227 (1194)
Q Consensus 160 ~G~~-~~llGp~GsGKSTLL~~L~G~l~~~--------~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV---~ 227 (1194)
.|-. ++|+|+||||||||++.|+|..... ...+|.|.++|.++. .-.+.|++.+.+. ..| +
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHH
Confidence 3444 8999999999999999999975310 135789999885431 1112344433221 111 1
Q ss_pred HHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCch--HHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCC
Q 000998 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED--LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1194)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d--~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1194)
.++.........-.-++ . .+++ .+. ....+..+++.+++.+..--.|+|. ..
T Consensus 250 ~tl~~~~~aD~il~VvD-------------~-s~~~~~~~~-----------~~~~~~~~L~~l~~~~~p~ilV~NK-~D 303 (364)
T 2qtf_A 250 VTLSEAKYSDALILVID-------------S-TFSENLLIE-----------TLQSSFEILREIGVSGKPILVTLNK-ID 303 (364)
T ss_dssp HHHHGGGGSSEEEEEEE-------------T-TSCHHHHHH-----------HHHHHHHHHHHHTCCSCCEEEEEEC-GG
T ss_pred HHHHHHHhCCEEEEEEE-------------C-CCCcchHHH-----------HHHHHHHHHHHhCcCCCCEEEEEEC-CC
Confidence 11111100000000000 0 0011 000 1123566788888765543344542 33
Q ss_pred CCChhhhhHHHHH----HHH-hCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHh
Q 000998 306 GISGGQKKRLTTG----ELL-VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1194)
Q Consensus 306 ~LSGGqkqRvsia----~al-~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~ 354 (1194)
-+|+|+++|+.++ +++ ..++++ +|+|++|......+.+.|.+...
T Consensus 304 l~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 304 KINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4788888988887 555 334444 89999999999999998887654
No 307
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.04 E-value=2.7e-07 Score=97.57 Aligned_cols=57 Identities=21% Similarity=0.186 Sum_probs=39.2
Q ss_pred EEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh--cccceeeEeecCCC
Q 000998 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE--TFARISGYCEQNDI 912 (1194)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~Q~~~ 912 (1194)
...++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...|+++|+..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDED 82 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcc
Confidence 445789999999999999999999999753 6788888664321 11223577777543
No 308
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.02 E-value=3.4e-06 Score=100.47 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCc
Q 000998 971 TEQRKRLTIAVELVANPSIVFMDEP----------TSGLDARAAAIVMRTVRNIV----NTGRTIVCTIHQPS 1029 (1194)
Q Consensus 971 gGqrqrl~ia~aL~~~p~illLDEP----------TsgLD~~~~~~i~~~l~~l~----~~g~tvi~~~H~~~ 1029 (1194)
+++++|-.++.+....|.|||+||+ ++|.|......+.+++..+- ..+..||++||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5678888899999999999999999 44677766666677776653 24678999999975
No 309
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.00 E-value=3.7e-06 Score=100.19 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=39.4
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEecC----------CCCCCHHHHHHHHHHHHHHHh--ccCCeEEEEEecChh
Q 000998 309 GGQKKRLTTGELLVGPARVLFMDEI----------SNGLDSSTTYQIIKYLKHSTR--ALDGTTVISLLQPAP 369 (1194)
Q Consensus 309 GGqkqRvsia~al~~~~~vlllDEp----------tsgLD~~~~~~i~~~l~~~~~--~~~~t~ii~~~q~~~ 369 (1194)
|+++.|..+++|....|.|||+||+ +.|.|......+.+.|..+-. ...+.+||..++...
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 346777666666666665532 123456666665543
No 310
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.96 E-value=9.1e-06 Score=93.11 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=26.5
Q ss_pred EEEeCCcEEEEEccCCCChHHHHhhhcCC
Q 000998 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
+-+++|+++.|.||+|+|||||+..+++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999999874
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.95 E-value=3.1e-07 Score=97.12 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=47.5
Q ss_pred EeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC--CCceEEEEecCCCCCCCCCHHHHHHH
Q 000998 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMTVRETLDF 232 (1194)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 232 (1194)
...++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .....++++|++...+.+++.+++..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 455789999999999999999999999875 77888886653210 01234677776555555566666544
No 312
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.88 E-value=6e-06 Score=85.56 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=32.7
Q ss_pred ecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 000998 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188 (1194)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~ 188 (1194)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6788999999 99999999999999999999987653
No 313
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.85 E-value=1.6e-05 Score=83.62 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHH
Q 000998 314 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353 (1194)
Q Consensus 314 Rvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~ 353 (1194)
....|++++.+|+++++| ||++|......+++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999 99999999999998887543
No 314
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.83 E-value=1.2e-05 Score=91.32 Aligned_cols=139 Identities=18% Similarity=0.198 Sum_probs=87.4
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCH
Q 000998 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1194)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1194)
..+-|+.+.+-+.||+++.|.|+||+|||||+.-++..... .| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 34567777778999999999999999999999998864321 11 23556542 3454
Q ss_pred HHHHHHhhhccCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHhCCcccccccccCccCCC
Q 000998 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1194)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1194)
.+...= + ... ..+ +.+.+..+ | .
T Consensus 87 ~ql~~R---l-------------ls~--~~~-------------------------------v~~~~l~~---g-----~ 109 (338)
T 4a1f_A 87 EQLALR---A-------------LSD--LTS-------------------------------INMHDLES---G-----R 109 (338)
T ss_dssp HHHHHH---H-------------HHH--HHC-------------------------------CCHHHHHH---T-----C
T ss_pred HHHHHH---H-------------HHH--hhC-------------------------------CCHHHHhc---C-----C
Confidence 433210 0 000 000 00000000 2 4
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000998 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1194)
Q Consensus 307 LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~vilL~~ 383 (1194)
||+++.+|++.|...+.++++++.|+|... ..+|...++.+.+..++..+|++ |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI-----------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI-----------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE-----------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE-----------echHHhcC
Confidence 999999999999988889999999998643 33566666666554424555545 66666654
No 315
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.83 E-value=3.7e-05 Score=88.89 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCC
Q 000998 967 NGLSTEQRKRLTIAVELVANPSIVFMD-EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI--HQP 1028 (1194)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLD-EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~--H~~ 1028 (1194)
..+|++++|++. +.+...++-++++| +|++|+|......+++.++.... +..+|++. ||.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 458999998876 55555677788999 99999999988888877776543 77888888 764
No 316
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.82 E-value=6.4e-06 Score=104.55 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCcHHHHHhcCe
Q 000998 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCT-IHQPSIDIFESFDE 1038 (1194)
Q Consensus 967 ~~LSgGqrqrl~ia~aL~~~p~illLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tvi~~-~H~~~~~~~~~~d~ 1038 (1194)
.-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||++. .+.+.+++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~ 261 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFND 261 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTS
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcC
Confidence 3589999999999999999999999999996 999877666666665544445677775 88764 45566664
No 317
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.79 E-value=6.8e-06 Score=86.82 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=27.3
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 000998 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1194)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1194)
++++|++++|+||||||||||++.|++.+.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998854
No 318
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.78 E-value=8.5e-06 Score=92.69 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=78.7
Q ss_pred eeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHH
Q 000998 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1194)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~ 924 (1194)
|+.+.+-++||+++.|.|++|+|||||+.-++.... . .|. .+.|+.= .++..+-.
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g~---------~Vl~fSl------Ems~~ql~- 90 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DDR---------GVAVFSL------EMSAEQLA- 90 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TTC---------EEEEEES------SSCHHHHH-
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cCC---------eEEEEeC------CCCHHHHH-
Confidence 445555688999999999999999999988875321 0 111 1223221 22322221
Q ss_pred HHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000998 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004 (1194)
Q Consensus 925 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~ 1004 (1194)
.+.......+.+..+.+ ..||.++.+|+..|...+.++++.+.|+|...+|
T Consensus 91 -----------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~---- 141 (338)
T 4a1f_A 91 -----------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE---- 141 (338)
T ss_dssp -----------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH----
T ss_pred -----------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH----
Confidence 11111111112222221 2599999999999999999999999999875533
Q ss_pred HHHHHHHHHHHh-C-CCEEEEEec
Q 000998 1005 AIVMRTVRNIVN-T-GRTIVCTIH 1026 (1194)
Q Consensus 1005 ~~i~~~l~~l~~-~-g~tvi~~~H 1026 (1194)
.|...++++.+ . |..+|++-|
T Consensus 142 -~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 -QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHhcCCCCEEEEec
Confidence 55666666654 3 677877755
No 319
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.77 E-value=8.5e-06 Score=85.91 Aligned_cols=41 Identities=27% Similarity=0.105 Sum_probs=25.5
Q ss_pred cceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
....+++|||+.+++|++++|+|||||||||+.+.|++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34579999999999999999999999999999999998763
No 320
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.74 E-value=4.7e-06 Score=94.56 Aligned_cols=81 Identities=15% Similarity=0.021 Sum_probs=59.9
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCC---------C---CceEEEE-ec
Q 000998 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---------P---PRTSAYV-SQ 216 (1194)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---------~---~~~~~yv-~Q 216 (1194)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999988654 788988776542210 1 4457888 67
Q ss_pred CCCCCCCCCHHHHHHHh
Q 000998 217 QDWQVAEMTVRETLDFA 233 (1194)
Q Consensus 217 ~d~~~~~lTV~E~l~f~ 233 (1194)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555667776553
No 321
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.72 E-value=7.6e-07 Score=106.76 Aligned_cols=49 Identities=37% Similarity=0.532 Sum_probs=42.4
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCC
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~ 204 (1194)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.+.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 4789999999999 99999999999999999999864 5788888876543
No 322
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.69 E-value=9.7e-06 Score=84.49 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 000998 161 SRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1194)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1194)
|++++|+||||||||||+++|+|.+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999998753
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.66 E-value=1.5e-05 Score=84.14 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=26.2
Q ss_pred EEeCCcEEEEEccCCCChHHHHhhhcCCCC
Q 000998 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1194)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1194)
++++|++++|+||||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999763
No 324
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.62 E-value=5.1e-06 Score=91.20 Aligned_cols=63 Identities=19% Similarity=0.044 Sum_probs=44.8
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHh---cCcCCCCceeeEEE--------ECCccCCCCC----CCceEEEE
Q 000998 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALA---GRLGHHLQVSGKIT--------YNGHGFKEFV----PPRTSAYV 214 (1194)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~---G~l~~~~~~~G~i~--------~~G~~~~~~~----~~~~~~yv 214 (1194)
++++.+ ++|++++|+|||||||||++++|+ |...+ .+|.|. .+|.++.... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 66543 489998 8887764321 12456788
Q ss_pred ecCC
Q 000998 215 SQQD 218 (1194)
Q Consensus 215 ~Q~d 218 (1194)
+|.+
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 7653
No 325
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.60 E-value=3.6e-05 Score=97.71 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=55.8
Q ss_pred CCCChhhhhHHHHHHHHhCCCcEeEEecCCC-CCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000998 305 KGISGGQKKRLTTGELLVGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1194)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~~~vlllDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1194)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++.+++...+.+++++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTS
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcC
Confidence 3489999999999999999999999999996 9998877777776664432 1234555567777777777775
No 326
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.59 E-value=1.7e-05 Score=98.99 Aligned_cols=131 Identities=16% Similarity=0.074 Sum_probs=72.5
Q ss_pred EEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCCh---hcccceeeEeecCCCCCCCCcHHHHHHHH
Q 000998 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFS 926 (1194)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~ 926 (1194)
+.+++|..++|+|++|+|||||++.|++........|+| .+|....+ ....+.+++..|...+... ++..
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~----- 76 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV----- 76 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE-----
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE-----
Confidence 456789999999999999999999999643211124655 45543321 1223344444443222110 0000
Q ss_pred hhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 000998 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1194)
Q Consensus 927 ~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~ 1006 (1194)
.+.| .|+...++ .......-..+..++++| |+.|+++.+...
T Consensus 77 ----------------------------nliD----TpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~ 118 (665)
T 2dy1_A 77 ----------------------------FLLD----APGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERA 118 (665)
T ss_dssp ----------------------------EEEE----CCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH
T ss_pred ----------------------------EEEe----CCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHH
Confidence 1111 12111221 112222335677889999 999999887633
Q ss_pred HHHHHHHHHhCCCEEEEEecCCc
Q 000998 1007 VMRTVRNIVNTGRTIVCTIHQPS 1029 (1194)
Q Consensus 1007 i~~~l~~l~~~g~tvi~~~H~~~ 1029 (1194)
++.+.+.+.++|+++|..+
T Consensus 119 ----~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 119 ----WTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp ----HHHHHHTTCCEEEEEECGG
T ss_pred ----HHHHHHccCCEEEEecCCc
Confidence 3333345888999999754
No 327
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.58 E-value=6.5e-06 Score=89.93 Aligned_cols=39 Identities=36% Similarity=0.452 Sum_probs=36.5
Q ss_pred eeeeecceEeEeC---CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 148 LTILDDLSGIIRP---SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 148 ~~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
.++|+|+|+.+++ |+.++|+|++||||||+.++|++.+.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999 99999999999999999999998764
No 328
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.57 E-value=6.9e-06 Score=90.11 Aligned_cols=57 Identities=25% Similarity=0.203 Sum_probs=45.5
Q ss_pred eCCcEEEEEccCCCChHHHHhhhc---CCCCCCeeEEEEE--------EcCccCCh----hcccceeeEeecCC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIY--------ISGYPKRQ----ETFARISGYCEQND 911 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~Q~~ 911 (1194)
++|++++|+|||||||||++++|+ |... +.+|.++ .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 689999999999999999999999 8765 5678888 78876532 23556788888754
No 329
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.57 E-value=5.2e-06 Score=87.64 Aligned_cols=51 Identities=25% Similarity=0.312 Sum_probs=41.8
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEE--EECCccC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI--TYNGHGF 202 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i--~~~G~~~ 202 (1194)
.+..++++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchh
Confidence 456677777888999999999999999999999999875 2 5766 7776544
No 330
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.51 E-value=4.7e-06 Score=91.02 Aligned_cols=38 Identities=34% Similarity=0.511 Sum_probs=34.8
Q ss_pred ceEEeeeeeEEEeC---CcEEEEEccCCCChHHHHhhhcCC
Q 000998 841 RLQLLVNVTGAFRP---GVLTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 841 ~~~iL~~vs~~i~~---Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
...+|+|+|+.+++ |++++|+|++||||||+.++|++.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999 999999999999999999999974
No 331
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.48 E-value=7e-07 Score=107.02 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=52.0
Q ss_pred EEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChh---cccceeeEeecCCC-CCCCCc
Q 000998 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFARISGYCEQNDI-HSPGLT 918 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~-~~~~lT 918 (1194)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+.... ...+.+++++|... ..|.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 3566788888888 89999999999999999998653 46788888654221 11223456666543 345566
Q ss_pred HHHHHH
Q 000998 919 VLESLL 924 (1194)
Q Consensus 919 v~e~l~ 924 (1194)
+.+++.
T Consensus 128 ~IDEId 133 (499)
T 2dhr_A 128 FIDEID 133 (499)
T ss_dssp EEECGG
T ss_pred EEehHH
Confidence 666653
No 332
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.47 E-value=4.5e-05 Score=78.95 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=29.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEE
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~ 197 (1194)
.+|++++|+||||||||||++.|++.+++. ..|.|.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 368999999999999999999999987531 3565544
No 333
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=4e-05 Score=80.71 Aligned_cols=37 Identities=32% Similarity=0.153 Sum_probs=23.9
Q ss_pred eEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCC
Q 000998 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
...++|||+.+++|++++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999999999999999964
No 334
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.46 E-value=2.1e-05 Score=90.88 Aligned_cols=44 Identities=36% Similarity=0.328 Sum_probs=39.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEE
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~ 197 (1194)
..+|+++++.+++|++++|+||||||||||+++|+|.+ .|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999864 576655
No 335
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.45 E-value=4.1e-05 Score=79.13 Aligned_cols=33 Identities=33% Similarity=0.483 Sum_probs=29.5
Q ss_pred eeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCC
Q 000998 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
+++++.+.+| +++|+||||||||||+++|.+..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 4788899999 99999999999999999998743
No 336
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.44 E-value=0.0005 Score=79.78 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=35.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Q 000998 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN---TGRTIVCTIHQPS 1029 (1194)
Q Consensus 985 ~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~---~g~tvi~~~H~~~ 1029 (1194)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888777777766654 5788999999874
No 337
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.44 E-value=2.9e-05 Score=83.84 Aligned_cols=42 Identities=21% Similarity=0.065 Sum_probs=35.1
Q ss_pred ceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccC
Q 000998 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202 (1194)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~ 202 (1194)
-++..++|++++|.|++|||||||+++|+|. .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3446689999999999999999999999986 47788877653
No 338
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.43 E-value=1.7e-05 Score=89.94 Aligned_cols=49 Identities=22% Similarity=0.181 Sum_probs=39.4
Q ss_pred eeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
++++++.+++|++++|+|+||+||||++..|++... ...|+|.+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 468888889999999999999999999999998643 1246777766554
No 339
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.41 E-value=2.4e-05 Score=82.73 Aligned_cols=70 Identities=7% Similarity=0.030 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHH-HHHhcCeEEEEc
Q 000998 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSID-IFESFDELLFMK 1043 (1194)
Q Consensus 970 SgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~-~~~~~d~~~~l~ 1043 (1194)
+.|+.+|..++..+..+|..+..+ ++.+++.....+.+.++.. .+.+||+.+|..... ....||.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 567888888888888877643322 3345555555554444332 356888888865321 245678888875
No 340
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.38 E-value=4.4e-05 Score=79.50 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.6
Q ss_pred CcEEEEEccCCCChHHHHhhhcCCCC
Q 000998 855 GVLTALVGVSGAGKTTLMDVLAGRKT 880 (1194)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1194)
|++++|+||||||||||+++|+|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999654
No 341
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.38 E-value=4.5e-05 Score=82.37 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=33.0
Q ss_pred EEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
..++|++++|+|+||||||||+++|+|. .|+|.+.+.|.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 3468999999999999999999999986 26678887753
No 342
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.37 E-value=0.00047 Score=79.04 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=25.7
Q ss_pred EEEeCCcEEEEEccCCCChHHHHhhhcC
Q 000998 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1194)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1194)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999998876
No 343
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.36 E-value=0.00019 Score=81.26 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=32.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1194)
.+-|+++.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4457777778999999999999999999999888753
No 344
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.36 E-value=0.00013 Score=82.24 Aligned_cols=154 Identities=18% Similarity=0.250 Sum_probs=79.4
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP 932 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~ 932 (1194)
++| .++|+|++|+|||||++.|.|.... + ..+.+ ..+..+..|++.+++..+ ++.+ .|
T Consensus 7 r~~-~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~--~tTr~~~~gi~~~~~~~i---~~iD---------Tp 64 (301)
T 1ega_A 7 YCG-FIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKA--QTTRHRIVGIHTEGAYQA---IYVD---------TP 64 (301)
T ss_dssp EEE-EEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCS--SCCSSCEEEEEEETTEEE---EEES---------SS
T ss_pred cCC-EEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCC--CcceeeEEEEEEECCeeE---EEEE---------Cc
Confidence 344 8999999999999999999986420 0 11222 122345567777764311 0000 01
Q ss_pred CcCcHHHHHHHHHHHHHHc--CCCcccCCccc-CCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHH
Q 000998 933 SEIELETQRAFVEEVMELV--ELTSLSGALIG-LPGINGLSTEQRKRLTIAVELV--ANPSIVFMDEPTSGLDARA-AAI 1006 (1194)
Q Consensus 933 ~~~~~~~~~~~v~~~l~~l--~l~~~~~~~~~-~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPTsgLD~~~-~~~ 1006 (1194)
. ...... ....+.+... ......|..+- ... ..+|.|++ .++..+. ..|.++++ +.+|... ...
T Consensus 65 G-~~~~~~-~~l~~~~~~~~~~~l~~~D~vl~Vvd~-~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 65 G-LHMEEK-RAINRLMNKAASSSIGDVELVIFVVEG-TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp S-CCHHHH-HHHHHHHTCCTTSCCCCEEEEEEEEET-TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred C-CCccch-hhHHHHHHHHHHHHHhcCCEEEEEEeC-CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 1 000000 0111111000 00011111110 011 23898886 4566666 67999998 7899876 566
Q ss_pred HHHHHHHHHhC-CC--EEEEEecCCcHHHHHhcCeE
Q 000998 1007 VMRTVRNIVNT-GR--TIVCTIHQPSIDIFESFDEL 1039 (1194)
Q Consensus 1007 i~~~l~~l~~~-g~--tvi~~~H~~~~~~~~~~d~~ 1039 (1194)
+.+.+.++++. |. .+.+++|+-. .+-+.+|.+
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 77888887653 43 4555666543 344444544
No 345
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.35 E-value=6e-05 Score=78.00 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=29.2
Q ss_pred CCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcC
Q 000998 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892 (1194)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 892 (1194)
+|++++|+||||||||||+++|++.... ...|.|....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~tt 41 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHTT 41 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeeccC
Confidence 6899999999999999999999986432 1345554433
No 346
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.35 E-value=0.0002 Score=82.68 Aligned_cols=57 Identities=11% Similarity=0.187 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 000998 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIH 1026 (1194)
Q Consensus 969 LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H 1026 (1194)
.+..++++..+++..+.+|+++++.-..+..|... ...++.++.+...| .+|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764333445433 34456666665455 57777766
No 347
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.34 E-value=4.3e-05 Score=86.34 Aligned_cols=58 Identities=12% Similarity=0.101 Sum_probs=42.9
Q ss_pred eeeecceEeEeCCe------EEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCC
Q 000998 149 TILDDLSGIIRPSR------LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVA 222 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~------~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 222 (1194)
..|++++..+..++ +++|+||||||||||+++|++.+... ...| .++++++++.+.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~-~~~~----------------~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW-PDHP----------------NVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS-TTCC----------------CEEEEEGGGGBCC
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc-CCCC----------------eEEEEeecccccc
Confidence 45667776666665 99999999999999999999987631 0122 4678888887655
Q ss_pred C
Q 000998 223 E 223 (1194)
Q Consensus 223 ~ 223 (1194)
.
T Consensus 137 ~ 137 (321)
T 3tqc_A 137 N 137 (321)
T ss_dssp H
T ss_pred h
Confidence 3
No 348
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.33 E-value=9.8e-05 Score=78.35 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=27.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1194)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998865
No 349
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.32 E-value=1.4e-05 Score=92.43 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=45.3
Q ss_pred EEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCC
Q 000998 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI 912 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~ 912 (1194)
.+|+++++.+++|++++|+||||||||||+++|+|.. .|.+..-..+. ..+...+|+++|..+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~ 219 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFL 219 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhH
Confidence 4788999999999999999999999999999999853 35554412111 112223667777654
No 350
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.32 E-value=0.00013 Score=77.19 Aligned_cols=45 Identities=29% Similarity=0.252 Sum_probs=37.5
Q ss_pred EeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCC
Q 000998 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1194)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1194)
-.+++|++++|+|+||||||||++.|++.++ .+.+++|++.+++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 3577899999999999999999999998753 25788998876653
No 351
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.31 E-value=0.0005 Score=78.19 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------H----HHHHHHHHHHHHHh-CCCEEEEEecC
Q 000998 973 QRKRLTIAVELV---ANPSIVFMDEPTSGLDA--------R----AAAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1194)
Q Consensus 973 qrqrl~ia~aL~---~~p~illLDEPTsgLD~--------~----~~~~i~~~l~~l~~-~g~tvi~~~H~ 1027 (1194)
+.+.+..+++++ .+|+++++|+.++-.+. . ....+++.|+++++ .+.+||++.|-
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 346677778887 57999999999986532 1 12445555666654 48999998884
No 352
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.30 E-value=0.00017 Score=81.76 Aligned_cols=130 Identities=13% Similarity=0.142 Sum_probs=78.3
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHH
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l 923 (1194)
-|+++.+-+++|+++.|.|++|+|||||+..++..... +| ..+.|+.- .++..+-.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~sl------E~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSL------EMGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEEC------CCCHHHHH
Confidence 35566667899999999999999999998887742110 01 11223321 12322221
Q ss_pred HHHhhhcCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000998 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1194)
Q Consensus 924 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~~ 1003 (1194)
. +.......+++..+.+.. ..||.++++|+..|...+.++++.+.|+|...
T Consensus 113 ~------------------R~~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~----- 163 (315)
T 3bh0_A 113 K------------------RLIVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS----- 163 (315)
T ss_dssp H------------------HHHHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred H------------------HHHHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence 1 111111111111111100 12899999999999999999999999998744
Q ss_pred HHHHHHHHHHHHhC-CCE--EEEEec
Q 000998 1004 AAIVMRTVRNIVNT-GRT--IVCTIH 1026 (1194)
Q Consensus 1004 ~~~i~~~l~~l~~~-g~t--vi~~~H 1026 (1194)
...+...++++.++ |.. +|++-|
T Consensus 164 ~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 33456666666544 667 888766
No 353
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.30 E-value=1.4e-05 Score=82.12 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=30.3
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1194)
.+|++++|+|+||||||||+++|++.. |.+.+++...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 468999999999999999999998743 5567776543
No 354
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.28 E-value=8.9e-05 Score=76.09 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=29.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCc
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~ 200 (1194)
.+|++++|+|||||||||+++.|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999865 55666653
No 355
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.27 E-value=0.001 Score=74.30 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCc---HHH
Q 000998 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDAR----------AAAIVMRTVRNIVN----TGRTIVCTIHQPS---IDI 1032 (1194)
Q Consensus 970 SgGqrqrl~ia~aL~~~p~illLDEPTsgLD~~----------~~~~i~~~l~~l~~----~g~tvi~~~H~~~---~~~ 1032 (1194)
+++++.+..++.+...+|.+||+||+.+-++.. ....++..+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777788888899999999998776532 22233333333211 2346788888753 234
Q ss_pred HHhcCeEE
Q 000998 1033 FESFDELL 1040 (1194)
Q Consensus 1033 ~~~~d~~~ 1040 (1194)
...|++.+
T Consensus 177 ~~R~~~~i 184 (297)
T 3b9p_A 177 LRRFTKRV 184 (297)
T ss_dssp HHHCCEEE
T ss_pred HhhCCeEE
Confidence 44455443
No 356
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.24 E-value=0.00033 Score=80.80 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=41.9
Q ss_pred CCChhhhhHHHHHHHHhCCCcEeEEe-cCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEE
Q 000998 306 GISGGQKKRLTTGELLVGPARVLFMD-EISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364 (1194)
Q Consensus 306 ~LSGGqkqRvsia~al~~~~~vlllD-EptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~ 364 (1194)
.+|+||++++. +.+...++-++++| ++.+|+|......+++.+..... +..++++.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 48999998876 55556778889999 99999999988888887776532 34444433
No 357
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.22 E-value=0.00021 Score=75.42 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=37.6
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHH--HhhcCeEEEEc
Q 000998 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA--YELFDDVILLS 382 (1194)
Q Consensus 307 LSGGqkqRvsia~al~~~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~--~~~~D~vilL~ 382 (1194)
.+.|+.+|..+++.+..+|..+.++ .+.+++.....+.+.++.. .++.+|+ -.+...+. ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~-~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLF-VVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEE-ECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEE-EechhhhcCcHhhCCEEEEEE
Confidence 3678999999999998888654433 3345565555555444321 2334443 33444333 56788887774
No 358
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.21 E-value=7.7e-05 Score=78.66 Aligned_cols=39 Identities=23% Similarity=0.107 Sum_probs=32.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECC
Q 000998 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199 (1194)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G 199 (1194)
.++|++++|+|+||||||||++.|++.+.+. .|.|.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEec
Confidence 5689999999999999999999999987543 56665544
No 359
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.21 E-value=0.00013 Score=76.40 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=26.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
..+|++++|+||||||||||++.|++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34799999999999999999999998765
No 360
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.17 E-value=0.0027 Score=70.86 Aligned_cols=27 Identities=44% Similarity=0.669 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
.++.-++|.||||+|||||+++|++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999865
No 361
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.16 E-value=3.4e-05 Score=81.31 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=35.5
Q ss_pred eeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEE--EEcCccC
Q 000998 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDI--YISGYPK 895 (1194)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i--~i~g~~~ 895 (1194)
.++...++|++++|+||||||||||+++|++... ..|.+ +++|.++
T Consensus 17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 4455557899999999999999999999998653 13555 7777543
No 362
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.12 E-value=0.00068 Score=78.24 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=27.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1194)
..+|+++++.++ .++|+|++|||||||+++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
No 363
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.11 E-value=0.0011 Score=75.19 Aligned_cols=35 Identities=37% Similarity=0.404 Sum_probs=29.6
Q ss_pred eeecce-EeEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 000998 150 ILDDLS-GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1194)
Q Consensus 150 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1194)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 455543 67999999999999999999999999864
No 364
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.11 E-value=0.00017 Score=76.53 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=25.8
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCCC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1194)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999998754
No 365
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.08 E-value=0.0018 Score=74.05 Aligned_cols=35 Identities=31% Similarity=0.307 Sum_probs=29.7
Q ss_pred eeecce-EeEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 000998 150 ILDDLS-GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1194)
Q Consensus 150 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1194)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 57999999999999999999999999874
No 366
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.04 E-value=0.00023 Score=72.64 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
.|++++|+||||||||||+++|++.++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
No 367
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.00 E-value=0.00016 Score=87.73 Aligned_cols=42 Identities=33% Similarity=0.372 Sum_probs=35.4
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceee-EEE-ECCcc
Q 000998 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-KIT-YNGHG 201 (1194)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G-~i~-~~G~~ 201 (1194)
.+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57899999999999999999999999998764 54 674 77643
No 368
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.99 E-value=0.0003 Score=74.31 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=26.1
Q ss_pred EEeCCcEEEEEccCCCChHHHHhhhcCCC
Q 000998 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
.+++|++++|+|++|||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999999864
No 369
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.97 E-value=0.00038 Score=69.59 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=24.4
Q ss_pred cceEeEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 000998 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1194)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 183 (1194)
+.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344455555 999999999999999999974
No 370
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.92 E-value=0.00037 Score=82.67 Aligned_cols=47 Identities=9% Similarity=0.138 Sum_probs=32.2
Q ss_pred CCCcEeEEecCCCCCCH-HHHHHHHHHHHHHHhccCCeEEEEEecChhH
Q 000998 323 GPARVLFMDEISNGLDS-STTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1194)
Q Consensus 323 ~~~~vlllDEptsgLD~-~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1194)
.++++|++||+..-.+. .+...++..+..+.. .+..+|++.+.+..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQK 240 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHH
Confidence 37899999999887764 567778888877653 345566655444443
No 371
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.90 E-value=0.00036 Score=69.85 Aligned_cols=28 Identities=29% Similarity=0.717 Sum_probs=23.0
Q ss_pred eeEEEeCCcEEEEEccCCCChHHHHhhhc
Q 000998 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1194)
Q Consensus 848 vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1194)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 33445555 89999999999999999986
No 372
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.90 E-value=0.0047 Score=71.46 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=24.4
Q ss_pred CCe--EEEEEcCCCCcHHHHHHHHhcCcCC
Q 000998 160 PSR--LTLLLGPPSSGKTTLLLALAGRLGH 187 (1194)
Q Consensus 160 ~G~--~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1194)
++. .++|.||+|+|||||++.+++.+..
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345 8999999999999999999988754
No 373
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.89 E-value=0.00017 Score=89.92 Aligned_cols=45 Identities=31% Similarity=0.268 Sum_probs=33.3
Q ss_pred EeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccC
Q 000998 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202 (1194)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~ 202 (1194)
+.+++|+.++|+|++|+|||||++.|++.... ....|+| .+|...
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~-~~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGA-KERRGRV-EEGTTT 48 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTS-SSSCCCG-GGTCCS
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCC-CCcccee-cCCccc
Confidence 45778999999999999999999999976543 1235766 555443
No 374
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.88 E-value=0.00033 Score=73.26 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=24.6
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
.+|++++|+||||||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 379999999999999999999999754
No 375
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.85 E-value=0.00076 Score=80.03 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=48.2
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE-EccCcEEEEeCCCC
Q 000998 985 ANPSIVFMDEPTSGLDA-RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF-MKRGGELIYAGPLG 1055 (1194)
Q Consensus 985 ~~p~illLDEPTsgLD~-~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~d~~~~-l~~gG~~~~~g~~~ 1055 (1194)
.+|++||+||+..-.+. .++..+...+..+.+.|..||+++|.+..++....+++.- +. .|.++..+|+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887664 6777888999888878999999999864322111122221 22 36677777765
No 376
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.77 E-value=0.0002 Score=75.51 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=29.7
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 893 (1194)
++|++++|+|+||||||||+++|++.... ..|.+.+.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~ 58 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHM 58 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEecc
Confidence 57899999999999999999999985421 1355555443
No 377
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.75 E-value=0.00026 Score=81.98 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.1
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999874
No 378
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.69 E-value=0.0011 Score=84.70 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=27.0
Q ss_pred EEeCCcEEEEEccCCCChHHHHhhhcCCCC
Q 000998 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1194)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1194)
.+++|+.+.|+||||+|||||+++|++...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999999998653
No 379
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.69 E-value=0.00067 Score=73.05 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=27.2
Q ss_pred eeecceEeEe---CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 150 ILDDLSGIIR---PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 150 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
=|.++++.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4677777776 999999999999999999999998875
No 380
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.66 E-value=6.6e-05 Score=84.80 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=29.0
Q ss_pred EEeeeeeEEEeCCc------EEEEEccCCCChHHHHhhhcCCC
Q 000998 843 QLLVNVTGAFRPGV------LTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge------~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
+.|++++..+..++ ++||+||||||||||+++|++..
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44555555555554 89999999999999999999854
No 381
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.66 E-value=0.0011 Score=74.43 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.8
Q ss_pred EeCCcEEEEEccCCCChHHHHhhhcCCC
Q 000998 852 FRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
++++..+.|.||+|+|||||.++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4678889999999999999999999754
No 382
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.65 E-value=0.00027 Score=81.03 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=35.1
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1194)
.+++++++.+++|.+++|+|+||+|||||++.|+|.+.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 477888888899999999999999999999999998754
No 383
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.64 E-value=0.00054 Score=69.86 Aligned_cols=26 Identities=38% Similarity=0.340 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCChHHHHhhhcCCC
Q 000998 854 PGVLTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
No 384
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.60 E-value=0.0071 Score=67.78 Aligned_cols=28 Identities=43% Similarity=0.520 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 000998 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1194)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1194)
|...++|.||||+||||+.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4568999999999999999999987643
No 385
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.59 E-value=0.00029 Score=75.38 Aligned_cols=37 Identities=38% Similarity=0.444 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEE
Q 000998 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1194)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~ 197 (1194)
+.+++|+|||||||||+++.|++.++-....+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999977533334677765
No 386
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.58 E-value=0.0023 Score=75.06 Aligned_cols=25 Identities=44% Similarity=0.446 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCChHHHHhhhcCC
Q 000998 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999974
No 387
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.56 E-value=0.00061 Score=78.21 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=30.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECC
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G 199 (1194)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~ 109 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLA 109 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEe
Confidence 467899999999999999999999977543 56665544
No 388
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.55 E-value=0.0019 Score=65.89 Aligned_cols=27 Identities=37% Similarity=0.697 Sum_probs=23.3
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
No 389
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.55 E-value=0.00054 Score=83.50 Aligned_cols=47 Identities=30% Similarity=0.496 Sum_probs=38.6
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECC
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G 199 (1194)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 3566677777 89999999999999999999999988653 67776555
No 390
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.46 E-value=0.0003 Score=85.30 Aligned_cols=41 Identities=37% Similarity=0.498 Sum_probs=32.5
Q ss_pred EeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEE-EEE-EcCcc
Q 000998 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIY-ISGYP 894 (1194)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~-i~g~~ 894 (1194)
+++|++++|+|+||||||||+++|+|.... ..| .+. ++|..
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 568999999999999999999999997542 233 564 77753
No 391
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.44 E-value=0.0051 Score=72.13 Aligned_cols=28 Identities=32% Similarity=0.229 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 000998 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1194)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1194)
++.+++++||+||||||++..|++.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999988754
No 392
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.41 E-value=0.0027 Score=64.65 Aligned_cols=27 Identities=41% Similarity=0.607 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 393
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.40 E-value=0.014 Score=62.79 Aligned_cols=42 Identities=7% Similarity=0.106 Sum_probs=28.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEec
Q 000998 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN--TGRTIVCTIH 1026 (1194)
Q Consensus 985 ~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~--~g~tvi~~~H 1026 (1194)
.+|+++++..+.+.++......+..+++.+.. ...+||+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999988888888665555555443321 1358888888
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.36 E-value=0.00078 Score=71.41 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=32.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceee--EEEECCc
Q 000998 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG--KITYNGH 200 (1194)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G--~i~~~G~ 200 (1194)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 5678999999999999999999999987532 56 6666653
No 395
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.34 E-value=0.0029 Score=75.06 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC---------CCceeeEEEECCccCC---CCCCCceEEEEecCCCCCCCCCHHHH
Q 000998 162 RLTLLLGPPSSGKTTLLLALAGRLGH---------HLQVSGKITYNGHGFK---EFVPPRTSAYVSQQDWQVAEMTVRET 229 (1194)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~---------~~~~~G~i~~~G~~~~---~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1194)
-.++|+|+||+|||||++.|+|.... ....+|.+.++|.++. ....++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 47899999999999999999997431 0134789999997542 21222333444344333444444455
Q ss_pred HHH
Q 000998 230 LDF 232 (1194)
Q Consensus 230 l~f 232 (1194)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 396
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.33 E-value=0.0015 Score=67.02 Aligned_cols=28 Identities=32% Similarity=0.291 Sum_probs=25.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
++|++++|.|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999998763
No 397
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.33 E-value=0.0019 Score=68.17 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=24.1
Q ss_pred ceEeEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 000998 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1194)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1194)
.++.+.| .+++|+|||||||||++.+|.-.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555 49999999999999999999643
No 398
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.28 E-value=0.0013 Score=71.02 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.0
Q ss_pred eCCcEEEEEccCCCChHHHHhhhc
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLA 876 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1194)
..|+.++|.|||||||||++..+.
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHH
Confidence 468999999999999999887665
No 399
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.27 E-value=0.0016 Score=68.57 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=26.2
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998763
No 400
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.25 E-value=0.0029 Score=65.62 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=27.2
Q ss_pred EEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCC------CCCeeEEEEEEcC
Q 000998 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK------TGGIIEGDIYISG 892 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~------~~~~~~G~i~i~g 892 (1194)
.+++++++..++. .++|+|++|+|||||++.+.+.. +.+...+.+.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 4778888888777 78999999999999999998732 1223445555555
No 401
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.25 E-value=0.031 Score=60.04 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999998654
No 402
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.25 E-value=0.0019 Score=66.78 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=26.4
Q ss_pred cceEeEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 000998 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1194)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1194)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788888999999999999999999999865
No 403
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.24 E-value=0.022 Score=65.23 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=25.0
Q ss_pred EEEeCCcEEEEEccCCCChHHHHhhhcC
Q 000998 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1194)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1194)
+-+++|+++.|.|++|+|||||...++.
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999999887764
No 404
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.23 E-value=0.0017 Score=68.38 Aligned_cols=27 Identities=30% Similarity=0.743 Sum_probs=22.5
Q ss_pred eEEEeCCcEEEEEccCCCChHHHHhhhc
Q 000998 849 TGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1194)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~L~ 876 (1194)
++.+.+| +++|+|||||||||++++|.
T Consensus 18 ~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 18 VVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3445554 99999999999999999885
No 405
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.22 E-value=0.017 Score=65.35 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=25.2
Q ss_pred EEEeCCcEEEEEccCCCChHHHHhhhcC
Q 000998 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1194)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1194)
+-+++|+++.|.|++|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999987764
No 406
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.19 E-value=0.0023 Score=65.69 Aligned_cols=40 Identities=30% Similarity=0.218 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCcc
Q 000998 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201 (1194)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~ 201 (1194)
.+++|+|++|||||||++.|.+.+......-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999998764322234777776544
No 407
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.18 E-value=0.0019 Score=74.64 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=24.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
.+++.++|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999998763
No 408
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.17 E-value=0.0033 Score=65.18 Aligned_cols=35 Identities=34% Similarity=0.390 Sum_probs=20.8
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1194)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999988887 5689999999999999999974
No 409
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.15 E-value=0.0034 Score=74.44 Aligned_cols=38 Identities=24% Similarity=0.539 Sum_probs=29.9
Q ss_pred EEEEEccCCCChHHHHhhhcCCCC----------CCeeEEEEEEcCcc
Q 000998 857 LTALVGVSGAGKTTLMDVLAGRKT----------GGIIEGDIYISGYP 894 (1194)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~~----------~~~~~G~i~i~g~~ 894 (1194)
.++|+|+||+|||||++.|+|... ..+..|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999642 11346888888864
No 410
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.10 E-value=0.05 Score=62.25 Aligned_cols=30 Identities=40% Similarity=0.541 Sum_probs=26.4
Q ss_pred EeEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
+-+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999998887543
No 411
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.08 E-value=0.001 Score=75.81 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=30.2
Q ss_pred eeeEEEeCCcEEEEEccCCCChHHHHhhhcCC
Q 000998 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
|+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999874
No 412
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.05 E-value=0.0021 Score=69.04 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=25.7
Q ss_pred eeeeeEEEe---CCcEEEEEccCCCChHHHHhhhcCCCC
Q 000998 845 LVNVTGAFR---PGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1194)
Q Consensus 845 L~~vs~~i~---~Ge~~al~G~nGaGKSTLl~~L~g~~~ 880 (1194)
|.++++.+. +|.+++|.|++||||||+++.|+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345555555 899999999999999999999997543
No 413
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.05 E-value=0.02 Score=63.29 Aligned_cols=28 Identities=46% Similarity=0.692 Sum_probs=24.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 158 IRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
+.++.-++|.||||+|||||+++|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999999765
No 414
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.04 E-value=0.0016 Score=68.06 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=30.5
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1194)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47888888888885 689999999999999999863
No 415
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.03 E-value=0.00036 Score=79.94 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=33.4
Q ss_pred eEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCC
Q 000998 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
..+++++++.+.+|.+++|+|++|||||||++.|++..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35677888888999999999999999999999998753
No 416
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.02 E-value=0.00092 Score=75.85 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=32.3
Q ss_pred eeecceEeEeCCeE--EEEEcCCCCcHHHHHHHHhcCcC
Q 000998 150 ILDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 150 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
++++++..+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 66777777888888 99999999999999999998764
No 417
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.00 E-value=0.0043 Score=72.65 Aligned_cols=43 Identities=23% Similarity=0.047 Sum_probs=36.2
Q ss_pred ecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECC
Q 000998 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199 (1194)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G 199 (1194)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd 133 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVA 133 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEee
Confidence 678887 89999999999999999999999988653 56666554
No 418
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.97 E-value=0.0076 Score=66.68 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=22.9
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
.++.-+.|.||+|+|||||.++++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456678999999999999999998743
No 419
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.96 E-value=0.0024 Score=66.07 Aligned_cols=30 Identities=40% Similarity=0.473 Sum_probs=26.5
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 000998 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1194)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1194)
.++|.+++|.|++||||||+.+.|++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999999988753
No 420
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.96 E-value=0.0012 Score=75.76 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=29.2
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 893 (1194)
+++.+++|+|++|||||||+|.|+|.... ..|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEee
Confidence 35789999999999999999999985331 1355555544
No 421
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.90 E-value=0.0028 Score=65.03 Aligned_cols=27 Identities=41% Similarity=0.425 Sum_probs=24.0
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999753
No 422
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.89 E-value=0.002 Score=69.49 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=38.0
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEecCCC-CCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000998 309 GGQKKRLTTGELLVGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1194)
Q Consensus 309 GGqkqRvsia~al~~~~~vlllDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1194)
.|.-.+.. ...+.+-+++++||.-. ++|......+++.+...... -.+++++-+.+.+...++|++
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~-~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE-VRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC-CeEEEEecCCCHHHHHHHcCC
Confidence 34444432 33578899999999966 68777665555554443221 124445555555555555543
No 423
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.89 E-value=0.0098 Score=70.55 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=74.0
Q ss_pred eeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHH
Q 000998 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1194)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~ 924 (1194)
|+.+.+-+++|+++.|.|++|+|||||..-++..... . .|. .+.|+.= .++..+-
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~---~-----~g~---------~vl~~sl------E~~~~~l-- 244 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL---K-----EGV---------GVGIYSL------EMPAAQL-- 244 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH---T-----TCC---------CEEEEES------SSCHHHH--
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---h-----CCC---------eEEEEEC------CCCHHHH--
Confidence 4555666899999999999999999998888753210 0 011 1222221 1222111
Q ss_pred HHhhhcCCCcCcHHHHHHHHHHHHH-HcCC--CcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000998 925 FSAWLRLPSEIELETQRAFVEEVME-LVEL--TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1194)
Q Consensus 925 f~~~lr~~~~~~~~~~~~~v~~~l~-~l~l--~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgLD~ 1001 (1194)
+.+++. ..++ ..+.+ ..|+.++.+|+.-|...+.+.++.+.|+|...+
T Consensus 245 -------------------~~R~~~~~~~i~~~~l~~--------g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~-- 295 (444)
T 2q6t_A 245 -------------------TLRMMCSEARIDMNRVRL--------GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTL-- 295 (444)
T ss_dssp -------------------HHHHHHHHTTCCTTTCCG--------GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBH--
T ss_pred -------------------HHHHHHHHcCCCHHHHhC--------CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCH--
Confidence 111111 1122 11111 258999999999998888888888888764432
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEec
Q 000998 1002 RAAAIVMRTVRNIVN-TGRTIVCTIH 1026 (1194)
Q Consensus 1002 ~~~~~i~~~l~~l~~-~g~tvi~~~H 1026 (1194)
..+...++++.+ .|..+|++-+
T Consensus 296 ---~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 296 ---MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp ---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred ---HHHHHHHHHHHHHcCCCEEEEcC
Confidence 234555666543 4677777654
No 424
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.89 E-value=0.0066 Score=68.70 Aligned_cols=45 Identities=7% Similarity=0.117 Sum_probs=34.3
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000998 984 VANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028 (1194)
Q Consensus 984 ~~~p~illLDEPTs-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 1028 (1194)
..+|.+||+||+.. .-+..+...+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999865 2344677888888888777787788887754
No 425
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.87 E-value=0.018 Score=68.20 Aligned_cols=38 Identities=32% Similarity=0.564 Sum_probs=32.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45677777889999999999999999999999888643
No 426
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.84 E-value=0.0073 Score=71.49 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=27.5
Q ss_pred eeeeeEEEeCCcEEEEEccCCCChHHHHhhhcC
Q 000998 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1194)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1194)
|+.+.+-+.+|+++.|.|++|+|||||..-++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 445555689999999999999999999877764
No 427
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.84 E-value=0.003 Score=67.39 Aligned_cols=57 Identities=23% Similarity=0.160 Sum_probs=38.9
Q ss_pred CcEEEEEccCCCChHHHHhhhcCCCC-CCeeEEEEEE--------cCccCCh----hcccceeeEeecCC
Q 000998 855 GVLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYI--------SGYPKRQ----ETFARISGYCEQND 911 (1194)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~Q~~ 911 (1194)
+.+++|+|++||||||+.++|++... .-+..|++.. +|.+... ....+.+|+++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 56899999999999999999997431 1134577665 5665431 12345577887753
No 428
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.84 E-value=0.00058 Score=78.79 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=26.7
Q ss_pred eEEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCC
Q 000998 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
+.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 44566777766 999999999999999998853
No 429
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.82 E-value=0.003 Score=66.39 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=24.2
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
.+|.+++|+||||||||||.+.|+...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999999998644
No 430
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.82 E-value=0.0015 Score=79.53 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=38.1
Q ss_pred EEeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCc
Q 000998 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1194)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 893 (1194)
.+++++++.+ +|+.++|+||||+|||||+++|++... ...|.|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 3556677777 899999999999999999999998653 34677777664
No 431
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.80 E-value=0.0046 Score=71.55 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=26.2
Q ss_pred ceEeEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 000998 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1194)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1194)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4456678889999999999999999999986
No 432
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.80 E-value=0.014 Score=62.28 Aligned_cols=53 Identities=13% Similarity=0.237 Sum_probs=41.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCcHHHHHhcCeEEEEc
Q 000998 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH---------QPSIDIFESFDELLFMK 1043 (1194)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~~~~~~d~~~~l~ 1043 (1194)
+|+++++||.-. |+. .+++.++.+++.|.+||++-| .++..+...+|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 654 255666777777999999999 55667888899998874
No 433
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.79 E-value=0.0025 Score=69.63 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=31.1
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCc
Q 000998 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1194)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~ 200 (1194)
..+++.+++|+|+|||||||+.+.|+..++. |.+.++|-
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D 66 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGD 66 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecH
Confidence 4567889999999999999999999987642 34555653
No 434
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.77 E-value=0.003 Score=72.05 Aligned_cols=33 Identities=36% Similarity=0.590 Sum_probs=31.4
Q ss_pred cceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999998765
No 435
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.69 E-value=0.0037 Score=69.88 Aligned_cols=44 Identities=23% Similarity=0.143 Sum_probs=35.0
Q ss_pred ec-ceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECC
Q 000998 152 DD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199 (1194)
Q Consensus 152 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G 199 (1194)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~ 133 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVG 133 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 45 777776 9999999999999999999999987543 45555443
No 436
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.68 E-value=0.0054 Score=66.90 Aligned_cols=35 Identities=40% Similarity=0.658 Sum_probs=25.5
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
.++++++.+++| ++|.||||+|||||+++|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455666666665 89999999999999999998764
No 437
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.65 E-value=0.0045 Score=63.72 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 438
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.65 E-value=0.0089 Score=60.17 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.2
Q ss_pred EEEEEccCCCChHHHHhhhcCCC
Q 000998 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 439
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.65 E-value=0.004 Score=64.32 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=25.8
Q ss_pred eeeEEEeCCcEEEEEccCCCChHHHHhhhcCC
Q 000998 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56777788999999999999999999999864
No 440
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.64 E-value=0.004 Score=65.24 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 441
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.59 E-value=0.0021 Score=67.16 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=28.4
Q ss_pred EeeeeeEEEeCCcEEEEEccCCCChHHHHhhhcCC
Q 000998 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 15 ~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 566777776776 5789999999999999999874
No 442
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.59 E-value=0.0011 Score=76.51 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=27.1
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 31 ~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 31 SVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 4778888877 999999999999999998753
No 443
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.57 E-value=0.0052 Score=64.41 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 000998 163 LTLLLGPPSSGKTTLLLALAG 183 (1194)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G 183 (1194)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 444
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.53 E-value=0.0059 Score=62.32 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
|.++.|.|+|||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997764
No 445
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.52 E-value=0.0052 Score=62.21 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
+++|.|++||||||+.+.|+..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997764
No 446
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.51 E-value=0.041 Score=63.10 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCChHHHHhhhcCC
Q 000998 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
+..-+.|.||+|+|||||.++|+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4557889999999999999999864
No 447
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.49 E-value=0.011 Score=60.52 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.6
Q ss_pred EEEEEccCCCChHHHHhhhcCC
Q 000998 857 LTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 448
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.48 E-value=0.051 Score=57.83 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=38.2
Q ss_pred CCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEe---------cChhHHHhhcCeEEEEc
Q 000998 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL---------QPAPEAYELFDDVILLS 382 (1194)
Q Consensus 324 ~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~vilL~ 382 (1194)
+++++++||.-. |+.. +++.++.++.. +..+|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6653 45555666653 556666544 56788999999999986
No 449
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.41 E-value=0.0056 Score=68.67 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=32.0
Q ss_pred CChhhhhHHHHHHHHh--CCCcEeEEecCCCCCCHHH-HHHHHHHHHHHHhccC
Q 000998 307 ISGGQKKRLTTGELLV--GPARVLFMDEISNGLDSST-TYQIIKYLKHSTRALD 357 (1194)
Q Consensus 307 LSGGqkqRvsia~al~--~~~~vlllDEptsgLD~~~-~~~i~~~l~~~~~~~~ 357 (1194)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++....+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~ 147 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMN 147 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSC
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcC
Confidence 888886 5566666 78899998 7888876 5667777777765433
No 450
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.35 E-value=0.11 Score=59.69 Aligned_cols=27 Identities=37% Similarity=0.632 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
++..-++|.||+|+|||||+++|+..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999998765
No 451
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.33 E-value=0.0054 Score=64.26 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEccCCCChHHHHhhhcC
Q 000998 857 LTALVGVSGAGKTTLMDVLAG 877 (1194)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g 877 (1194)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 452
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.32 E-value=0.0023 Score=73.06 Aligned_cols=40 Identities=28% Similarity=0.541 Sum_probs=34.3
Q ss_pred eeeeecceEeEeCCeE--EEEEcCCCCcHHHHHHHHhcCcCC
Q 000998 148 LTILDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLGH 187 (1194)
Q Consensus 148 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~l~~ 187 (1194)
..+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3467778888888988 999999999999999999998643
No 453
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.31 E-value=0.0067 Score=65.11 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 162 RLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
No 454
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.29 E-value=0.02 Score=65.97 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.0
Q ss_pred CCcEEEEEccCCCChHHHHhhhcCC
Q 000998 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
.+..+.|.||+|+|||||++.++..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999864
No 455
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.24 E-value=0.0088 Score=60.23 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 000998 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 456
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.22 E-value=0.0077 Score=64.86 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 158 IRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999865
No 457
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.10 E-value=0.0088 Score=65.24 Aligned_cols=25 Identities=40% Similarity=0.684 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
.+++|+||||||||||.+.|++.++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999998763
No 458
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.09 E-value=0.0097 Score=61.47 Aligned_cols=27 Identities=44% Similarity=0.613 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998655
No 459
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.07 E-value=0.0072 Score=69.87 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=32.4
Q ss_pred EEEeCCcEEEEEccCCCChHHHHhhhcCCCC---------CCeeEEEEEEcCc
Q 000998 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---------GGIIEGDIYISGY 893 (1194)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---------~~~~~G~i~i~g~ 893 (1194)
+.++.|..++|+|++|+|||||+++|+|... -.+..|.+.+.+.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3456788999999999999999999998621 1244677777653
No 460
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.07 E-value=0.0092 Score=61.10 Aligned_cols=38 Identities=37% Similarity=0.338 Sum_probs=27.7
Q ss_pred cEEEEEccCCCChHHHHhhhcCCCC-CCeeEEEEEEcCc
Q 000998 856 VLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYISGY 893 (1194)
Q Consensus 856 e~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~ 893 (1194)
.+++|+|+||||||||++.|.+... .+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999987522 1223466666543
No 461
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.98 E-value=0.012 Score=60.67 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
|.+++|.|++||||||+.+.|+-.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987653
No 462
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.89 E-value=0.011 Score=60.75 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 160 PSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
++..++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46688999999999999999998765
No 463
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.85 E-value=0.0023 Score=72.58 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=30.5
Q ss_pred EeeeeeEEEeCCcE--EEEEccCCCChHHHHhhhcCC
Q 000998 844 LLVNVTGAFRPGVL--TALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 844 iL~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~ 878 (1194)
+++.+++.+++|+. ++|+|++||||||+.++|++.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 55677777788888 999999999999999999974
No 464
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.85 E-value=0.013 Score=65.67 Aligned_cols=29 Identities=41% Similarity=0.607 Sum_probs=26.2
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
.++++.-++|.||||+|||||+++|++.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35788899999999999999999999876
No 465
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.83 E-value=0.07 Score=61.11 Aligned_cols=27 Identities=41% Similarity=0.656 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
++..-++|.||+|+|||||.++++..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 456668999999999999999999765
No 466
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.81 E-value=0.18 Score=56.85 Aligned_cols=119 Identities=22% Similarity=0.303 Sum_probs=0.0
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhhcCC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP 932 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~~ 932 (1194)
.|..-+.|.||+|+|||||.++++....+. .-+.+++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~---~~~~i~~~--------------------------------------- 80 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNS---TFFSISSS--------------------------------------- 80 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSC---EEEEEECC---------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCC---cEEEEEhH---------------------------------------
Q ss_pred CcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-------CCCCCHHHHH
Q 000998 933 SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP-------TSGLDARAAA 1005 (1194)
Q Consensus 933 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP-------TsgLD~~~~~ 1005 (1194)
++.....| ...+.-+-.+..+-..+|.|||+||. ..+.......
T Consensus 81 ----------------------~l~~~~~g-------~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 131 (322)
T 1xwi_A 81 ----------------------DLVSKWLG-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARR 131 (322)
T ss_dssp ----------------------SSCCSSCC-------SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHH
T ss_pred ----------------------HHHhhhhh-------HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHH
Q ss_pred HHHHHHHHH-----HhCCCEEEEEecCC---cHHHHHhcCeEEEE
Q 000998 1006 IVMRTVRNI-----VNTGRTIVCTIHQP---SIDIFESFDELLFM 1042 (1194)
Q Consensus 1006 ~i~~~l~~l-----~~~g~tvi~~~H~~---~~~~~~~~d~~~~l 1042 (1194)
.+-+++..+ ...+..||.++..| +..+...||+.+.+
T Consensus 132 ~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 176 (322)
T 1xwi_A 132 IKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 176 (322)
T ss_dssp HHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEEC
T ss_pred HHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEe
No 467
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.81 E-value=0.012 Score=60.35 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEEccCCCChHHHHhhhcCC
Q 000998 857 LTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 468
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.80 E-value=0.013 Score=61.43 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 000998 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1194)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1194)
+|.+++|.|++||||||+.+.|+..++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987643
No 469
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.80 E-value=0.036 Score=65.52 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=32.5
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 000998 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1194)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1194)
..+-|+.+.+-++||+++.|.|+||+|||||+.-++..
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 34567777778999999999999999999998888753
No 470
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.78 E-value=0.009 Score=62.51 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.6
Q ss_pred CcEEEEEccCCCChHHHHhhhcCC
Q 000998 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 471
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.74 E-value=0.015 Score=60.58 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 160 PSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999766
No 472
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.72 E-value=0.012 Score=60.53 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=24.4
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCCC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
.+|.++.|+|++||||||+.+.|++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998753
No 473
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.72 E-value=0.012 Score=60.03 Aligned_cols=23 Identities=43% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 000998 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999765
No 474
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.69 E-value=0.013 Score=61.06 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 579999999999999999998763
No 475
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.67 E-value=0.082 Score=60.67 Aligned_cols=118 Identities=23% Similarity=0.287 Sum_probs=0.0
Q ss_pred EeCCcEEEEEccCCCChHHHHhhhcC--CCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhh
Q 000998 852 FRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL 929 (1194)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~l 929 (1194)
+++|+++.|.|++|+|||||...++. ...++ .-++++........+.+..|.-.++-......|+.+.+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~---~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l------ 141 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGG---TCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQAL------ 141 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH------
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCC---eEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHH------
Q ss_pred cCCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC--------
Q 000998 930 RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV--ANPSIVFMDEPTSGL-------- 999 (1194)
Q Consensus 930 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPTsgL-------- 999 (1194)
.+++.++ .+++++++|..++=.
T Consensus 142 ------------------------------------------------~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~ 173 (366)
T 1xp8_A 142 ------------------------------------------------EIMELLVRSGAIDVVVVDSVAALTPRAEIEGD 173 (366)
T ss_dssp ------------------------------------------------HHHHHHHTTTCCSEEEEECTTTCCCSTTC---
T ss_pred ------------------------------------------------HHHHHHHhcCCCCEEEEeChHHhccccccccc
Q ss_pred --CH---HHHHHHHHHHHHH----HhCCCEEEEEec
Q 000998 1000 --DA---RAAAIVMRTVRNI----VNTGRTIVCTIH 1026 (1194)
Q Consensus 1000 --D~---~~~~~i~~~l~~l----~~~g~tvi~~~H 1026 (1194)
|. ..++.+.+.+++| .+.+.+||++.|
T Consensus 174 ~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 174 MGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
No 476
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.67 E-value=0.014 Score=59.91 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 000998 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
No 477
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.66 E-value=0.015 Score=58.64 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 000998 163 LTLLLGPPSSGKTTLLLAL 181 (1194)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L 181 (1194)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 478
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.65 E-value=0.012 Score=60.35 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.2
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g 877 (1194)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
No 479
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.64 E-value=0.012 Score=75.12 Aligned_cols=32 Identities=41% Similarity=0.610 Sum_probs=28.6
Q ss_pred EeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 000998 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1194)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1194)
+.+++|+-++|.||||||||||+++|+|.++.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999998743
No 480
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.62 E-value=0.017 Score=58.76 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 000998 162 RLTLLLGPPSSGKTTLLLALAG 183 (1194)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G 183 (1194)
.+++|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
No 481
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.61 E-value=0.014 Score=60.37 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999999976553
No 482
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.60 E-value=0.016 Score=59.30 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 000998 163 LTLLLGPPSSGKTTLLLALAGR 184 (1194)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1194)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
No 483
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.60 E-value=0.012 Score=62.11 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=29.8
Q ss_pred EeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEE--EEEEcC
Q 000998 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG--DIYISG 892 (1194)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G--~i~i~g 892 (1194)
+++|.+++|+|++||||||+.+.|++... +..| .+.++|
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECC
Confidence 35789999999999999999999997543 1234 556654
No 484
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.57 E-value=0.45 Score=57.09 Aligned_cols=177 Identities=12% Similarity=-0.012 Sum_probs=0.0
Q ss_pred eecceEeEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCceeeEEEECCccCCCCCCCceEEEEecCCCCCCCCCHHHHH
Q 000998 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETL 230 (1194)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 230 (1194)
|+.+.+-+++|+++.|.|+||+|||||+.-++-..... ....+.|++ .+++..+.+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~------------------~g~~vl~~s------~E~s~~~l~ 287 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA------------------MGKKVGLAM------LEESVEETA 287 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT------------------SCCCEEEEE------SSSCHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh------------------cCCcEEEEe------ccCCHHHHH
Q ss_pred HHhhhccCCCCchh--hhHHHHHHHHHhCCCCCchHHHHHHHhhccCcchhHHHHHHHHHh--CCcccccccccCccCCC
Q 000998 231 DFAGQCQGVGSKYD--MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL--GLDTCADTLVGDEMLKG 306 (1194)
Q Consensus 231 ~f~~~~~~~~~~~~--~~~~~~~~e~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~~~~~ 306 (1194)
.=.......-...+ .+..-.-.+.+ .+.+.+.+ ...-..+...++
T Consensus 288 ~r~~~~~~~~~~~~~~~~~~g~l~~~~--------------------------~~~~~~~~~~~~~l~i~~~~~~----- 336 (503)
T 1q57_A 288 EDLIGLHNRVRLRQSDSLKREIIENGK--------------------------FDQWFDELFGNDTFHLYDSFAE----- 336 (503)
T ss_dssp HHHHHHHTTSCCTTCHHHHHHHHHTSH--------------------------HHHHHHHHHTTTCEEEECCC-------
T ss_pred HHHHHHHcCCChhhccccccCCCCHHH--------------------------HHHHHHHHhccCCEEEECCCCC-----
Q ss_pred CChhhhhHHHHHHHHhCCCcEeEEecCCC-------CCCHHHHHHHHHHHHHHHhccCCeEEEEEecC------------
Q 000998 307 ISGGQKKRLTTGELLVGPARVLFMDEISN-------GLDSSTTYQIIKYLKHSTRALDGTTVISLLQP------------ 367 (1194)
Q Consensus 307 LSGGqkqRvsia~al~~~~~vlllDEpts-------gLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~------------ 367 (1194)
++-.+-....-...--.+++++++|=.+. .=+......+.+.|+.+++..+.+++++.+-.
T Consensus 337 ~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~ 416 (503)
T 1q57_A 337 AETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGR 416 (503)
T ss_dssp -CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCC
Q ss_pred ---------hhHHHhhcCeEEEEc
Q 000998 368 ---------APEAYELFDDVILLS 382 (1194)
Q Consensus 368 ---------~~~~~~~~D~vilL~ 382 (1194)
+..+.+.+|-|+.|.
T Consensus 417 ~p~l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 417 PVSITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp CCCSSSCSSSSHHHHHCSEEEEEE
T ss_pred CCChhhhccchHhhecCcEEEEEE
No 485
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.56 E-value=0.14 Score=53.80 Aligned_cols=54 Identities=15% Similarity=0.256 Sum_probs=41.2
Q ss_pred CCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEe---------cChhHHHhhcCeEEEEcC
Q 000998 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL---------QPAPEAYELFDDVILLSE 383 (1194)
Q Consensus 324 ~~~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~vilL~~ 383 (1194)
+.+++++||.-- +|... ++.|+.++.. +..+|++=+ .+++++.+++|.|.-|..
T Consensus 101 ~~dvViIDEaQF-~~~~~----V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~a 163 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI----VEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQA 163 (214)
T ss_dssp SCCEEEECCGGG-SCTTH----HHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCC
T ss_pred CCCEEEEECccc-CCHHH----HHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeeee
Confidence 579999999876 76542 3666666553 667777777 789999999999998864
No 486
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.54 E-value=0.017 Score=64.25 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
..|.++.|.|||||||||+.+.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998755
No 487
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.53 E-value=0.016 Score=59.30 Aligned_cols=27 Identities=41% Similarity=0.366 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
..+..++|.|++||||||+.+.|+-.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998554
No 488
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.53 E-value=0.014 Score=60.41 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998655
No 489
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.48 E-value=0.016 Score=58.79 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 000998 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1194)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1194)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998764
No 490
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.46 E-value=0.017 Score=58.84 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.3
Q ss_pred CcEEEEEccCCCChHHHHhhhcCCC
Q 000998 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1194)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~L~g~~ 879 (1194)
|.++.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998654
No 491
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.41 E-value=0.0074 Score=62.73 Aligned_cols=28 Identities=29% Similarity=0.543 Sum_probs=24.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 158 IRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
++++.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999998655
No 492
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.40 E-value=0.049 Score=73.52 Aligned_cols=29 Identities=38% Similarity=0.484 Sum_probs=26.9
Q ss_pred eEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
=+++|+++.|.||||+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999998754
No 493
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.39 E-value=0.072 Score=57.74 Aligned_cols=120 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred EeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhhcC
Q 000998 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1194)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr~ 931 (1194)
+++..-+.|.||+|+|||||.+.++.... .--+.+++.......
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~~~~~~-------------------------------- 79 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAEFVEVI-------------------------------- 79 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTTTSSSS--------------------------------
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHHHHhhc--------------------------------
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC-----------C
Q 000998 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL-----------D 1000 (1194)
Q Consensus 932 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPTsgL-----------D 1000 (1194)
.-.+..+.+-.+..+.-..|.+||+||.-.-. +
T Consensus 80 ------------------------------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~ 123 (262)
T 2qz4_A 80 ------------------------------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123 (262)
T ss_dssp ------------------------------------TTHHHHHHHHHHHHHHHTCSEEEEEECC----------------
T ss_pred ------------------------------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccc
Q ss_pred HHHHHHHHHHHHHHHh----CCCEEEEEecCCc---HHHHH--hcCeEEEEc
Q 000998 1001 ARAAAIVMRTVRNIVN----TGRTIVCTIHQPS---IDIFE--SFDELLFMK 1043 (1194)
Q Consensus 1001 ~~~~~~i~~~l~~l~~----~g~tvi~~~H~~~---~~~~~--~~d~~~~l~ 1043 (1194)
......+.+++..+.. .+..||+++..+. ..+.. .||+.+.+.
T Consensus 124 ~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 124 TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp ---CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
No 494
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.39 E-value=0.018 Score=61.19 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
++|..++|+|++||||||+.+.|+-.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999998655
No 495
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.38 E-value=0.017 Score=58.30 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=20.1
Q ss_pred EEEEEccCCCChHHHHhhhcCC
Q 000998 857 LTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 857 ~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 496
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.34 E-value=0.02 Score=60.10 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 000998 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1194)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1194)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998654
No 497
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.33 E-value=0.031 Score=62.20 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred EeCCcEEEEEccCCCChHHH-HhhhcCCCCCCeeEEEEEEcCccCChhcccceeeEeecCCCCCCCCcHHHHHHHHhhhc
Q 000998 852 FRPGVLTALVGVSGAGKTTL-MDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1194)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTL-l~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~e~l~f~~~lr 930 (1194)
+.+| ++-|.||+|+||||| +.+++.....+.-.--++|++...-...+.+.+|.-.++-.+....+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~------------ 92 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQS------------ 92 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSB------------
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCC------------
Q ss_pred CCCcCcHHHHHHHHHHHHHHcCCCcccCCcccCCCCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCC-------
Q 000998 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL----VANPSIVFMDEPTSGL------- 999 (1194)
Q Consensus 931 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~~~~~~LSgGqrqrl~ia~aL----~~~p~illLDEPTsgL------- 999 (1194)
++...+.++.+| -.+|+++++|--++-.
T Consensus 93 -----------------------------------------~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg 131 (333)
T 3io5_A 93 -----------------------------------------LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETED 131 (333)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC-----
T ss_pred -----------------------------------------HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccC
Q ss_pred --------CHHHHHHHHHHHHHH----HhCCCEEEEEec
Q 000998 1000 --------DARAAAIVMRTVRNI----VNTGRTIVCTIH 1026 (1194)
Q Consensus 1000 --------D~~~~~~i~~~l~~l----~~~g~tvi~~~H 1026 (1194)
|...++.+-+.|++| .+.|.+||+|-|
T Consensus 132 ~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ 170 (333)
T 3io5_A 132 ALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170 (333)
T ss_dssp ---------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
No 498
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.31 E-value=0.016 Score=62.35 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=23.7
Q ss_pred eCCcEEEEEccCCCChHHHHhhhcCC
Q 000998 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1194)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 878 (1194)
.+|.+++|+|++||||||+.+.|++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999863
No 499
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.30 E-value=0.0071 Score=70.80 Aligned_cols=45 Identities=27% Similarity=0.110 Sum_probs=34.9
Q ss_pred eeeeEEEeCCcEEEEEccCCCChHHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000998 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1194)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1194)
+++++. +|++++++|+||+||||++..|++.... ..|.|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeecc
Confidence 467777 8999999999999999999999985431 13566665544
No 500
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.29 E-value=0.022 Score=60.21 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhc
Q 000998 160 PSRLTLLLGPPSSGKTTLLLALAG 183 (1194)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G 183 (1194)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
Done!