BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000999
(1193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 579 bits (1493), Expect = e-165, Method: Compositional matrix adjust.
Identities = 322/885 (36%), Positives = 479/885 (54%), Gaps = 94/885 (10%)
Query: 11 SFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVT 70
+F + EE++L FW F+ ++ + P Y Y+GPP A GLPH GH A + KD+
Sbjct: 9 NFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFP 68
Query: 71 RYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVE 130
RY++M G++ RR GWD HGLPVE E++K LG+K + ++ GI+++N+ACR V Y +
Sbjct: 69 RYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEK 128
Query: 131 EWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPL 190
EWE R W+D + Y T++ ++ES+WW L+++GL+Y+ KV+PY C TPL
Sbjct: 129 EWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPL 188
Query: 191 SNFEAGQNYKDVPDPEIMVSFPIVGDP-----EKAAFVAWTTTPWTLPSNLALCVNANFT 245
S+ E YK++ DP + V FP+ +P EKA+ + WTTTPWTLP N+A V+ +T
Sbjct: 189 SSHEVALGYKEIQDPSVYVRFPL-KEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYT 247
Query: 246 YVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDXXXXXXXXXXXXXXXAQDGEL 305
Y Q G+
Sbjct: 248 YAAF---------------------------------------------------QVGDE 256
Query: 306 ARSAENNESYEKLGE------VFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDS 359
A E + LGE F G L G Y P Y + F V+AD YV+ +
Sbjct: 257 ALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTP--PYPQALEKGYFVVLAD-YVSQED 313
Query: 360 GTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDI 419
GTGIVH APAFG +D +E + G L+ VD++G + F G Y ++A++ I
Sbjct: 314 GTGIVHQAPAFGAED----LETARVY-GLPLLKTVDEEGKLL--VEPFKGLYFREANRAI 366
Query: 420 IEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVP 479
+ L+ +G L K S HSYP CWR TPL+Y A SWF++ K++L+ NN++ +WVP
Sbjct: 367 LRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVP 426
Query: 480 DYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKI-- 537
++KE R+ WL+N DWA+SR+R+WGTPLP+W + + + S +L+ + + +
Sbjct: 427 PHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPE 486
Query: 538 -FDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNF 596
FD HR +D + + + G G +RR+ V D W++SG+MP+A +HYPFE+ E F +F
Sbjct: 487 PFDPHRPYVDQVELACACG---GTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESF 543
Query: 597 PGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPV 656
P FIAEG+DQTRGWF +L L LFG AF+N+IC+GL+L E G+KMSK N P
Sbjct: 544 PADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPW 603
Query: 657 EVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLV--QNAKRL 714
++I +GADALR Y+ S A+ RF + V V+D FL +N Y F V N R
Sbjct: 604 DIIRKFGADALRWYIYVSAPPEADR-RFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRP 662
Query: 715 EIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKF-LD 773
+++ P + +D+W+ + Q L+ V + +E Y T L F ++
Sbjct: 663 DLKNPPP---------PEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVE 713
Query: 774 NLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNM-RKV 832
+L+ YVR NR+R D A +TLY L+ + APFTPF E L+QN+ R V
Sbjct: 714 DLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSV 773
Query: 833 GSGSEESIHFCSFPKEE-GKRDERIEQSVLRMMTIIDLARNIRER 876
++ES+H +P+ + DE + + ++ ++DLAR R +
Sbjct: 774 RLEAKESVHLADWPEADPALADEALVAQMRAVLKVVDLARAARAK 818
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 338 bits (866), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 242/890 (27%), Positives = 422/890 (47%), Gaps = 105/890 (11%)
Query: 15 EEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQS 74
+E +I E W++ D + L++ + ++ +DGPP+A G H GH L +KD + RY++
Sbjct: 23 KEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKT 82
Query: 75 MMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQ 134
M GF+ GWD HGLP+E + K G+ R+ +M ++ E C+ +E ++
Sbjct: 83 MQGFYAPYVPGWDTHGLPIEQALTKK-GVDRK----KMSTAEFREKCKEFALEQIELQKK 137
Query: 135 IITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFE 194
R G DF + Y T+ ++ + +F ++ +KGL+YKG K + +S ++ L+ E
Sbjct: 138 DFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLA--E 195
Query: 195 AGQNYKDVPDPEIMVSFPIVGDP----EKAAFVAWTTTPWTLPSNLALCVNANFTYVKVR 250
A Y D I V+F + D A F+ WTTTPWT+PSN+A+ V+ Y +
Sbjct: 196 AEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYN 255
Query: 251 NKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDXXXXXXXXXXXXXXXAQDGELARSAE 310
G+ Y++AE+ A+ A + +
Sbjct: 256 --VNGEKYIIAEALSDAV-------------------------------------AEALD 276
Query: 311 NNESYEKLGEVFSGA---YLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCA 367
+++ KL + ++G ++V + F D VI ++VT+D+GTG VH A
Sbjct: 277 WDKASIKLEKEYTGKELEWVVAQH---------PFLDRESLVINGDHVTTDAGTGCVHTA 327
Query: 368 PAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKG 427
P GEDDY V + ++ +I +DD G FT + F G + A+K + + L KG
Sbjct: 328 PGHGEDDYIVGQQYEL-----PVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKG 382
Query: 428 RLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRF 487
L+K +THSYP WR+ P+I+RA P WF + +++ +LD + T + ++ K R
Sbjct: 383 ALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGK-TRI 441
Query: 488 HNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDH 547
+N + + +W +SR R WG PLPV+ +E+GE I+ ++V+ + L E ++
Sbjct: 442 YNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAK 501
Query: 548 ITIP---SSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEG 604
+P + G G + D+ D WF+SGS + E +FP EG
Sbjct: 502 DLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLE------TRPELSFPADMYLEG 555
Query: 605 LDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGA 664
DQ RGWF + + S A G ++ L+ +G V+ +GKKMSK L N P +V+ GA
Sbjct: 556 SDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGA 615
Query: 665 DALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIP 724
D RL++ ++ + + D + D + N RF++ N F P
Sbjct: 616 DIARLWVSSTDYLADVRI---SDEILKQTSDDYRKIRNTLRFMLGNIN--------DFNP 664
Query: 725 LDLATLQKSSNV-LDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLD-NLTNIYVRF 782
D ++ +S + +D+++ + + E + + + F++ L+N Y+ +
Sbjct: 665 -DTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDY 723
Query: 783 NRKRLKGRSGEDDCRIALST-LYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIH 841
+ L + R ++ T LY +L+ K++AP E ++ + V EES+H
Sbjct: 724 GKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV---KEESVH 780
Query: 842 FCSFPKEEGKRDERIEQSVL-RMMTIIDLARNIRERHNKPLKSPLREMIV 890
PK ++Q++L + T + N+R+ N+ L++ E ++
Sbjct: 781 LADMPKV-----VEVDQALLDKWRTFM----NLRDDVNRALETARNEKVI 821
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 142/550 (25%), Positives = 235/550 (42%), Gaps = 56/550 (10%)
Query: 342 FSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFT 401
++V ++AD V D GTG + PA DY + + G + ++ +G
Sbjct: 247 LTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERH-----GLKPVSVINLEGRME 301
Query: 402 GKITDFSGRYVK--DADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFV 459
G+ + R + +A + +E + G LVK T + C R TP+ Y P W++
Sbjct: 302 GERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWL 361
Query: 460 RVETLKEKLLDNNKQ--TYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDG 517
R+ L E++L ++ +VP+ K K +WLEN +DW +SR +WG +P W ED
Sbjct: 362 RMRPLAEEVLKGLRRGDIAFVPERWK-KVNMDWLENVKDWNISRQLWWGHQIPAWYCEDC 420
Query: 518 EEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSM 577
+ + V LE D + + P L+R EDVFD WF S
Sbjct: 421 QAVNVPRPERYLE---------------DPTSCEACGSPR---LKRDEDVFDTWFSSALW 462
Query: 578 PYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLV 637
P + + +P E E + +PG + G D W + V G+ F+ ++ +GLV
Sbjct: 463 PLSTLGWP-EETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLV 521
Query: 638 LAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVF 697
L E G+KMSK N P+E++ YGADALR LI + +R + + ++
Sbjct: 522 LDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYL-ATGGQDIRLDLRWL-EMARNFA 579
Query: 698 LPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEME 757
YNA RF++ + + + + P + D+++ S V + E
Sbjct: 580 NKLYNAARFVLLSREGFQAKEDTP-------------TLADRFMRSRLSRGVEEITALYE 626
Query: 758 GYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAP 816
L + + + + Y+ + LK + L TL VL K++ P
Sbjct: 627 ALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAH-----TLRTLEEVLAVLLKLLHP 681
Query: 817 FTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTIIDLARNIRER 876
PF T LYQ + +G EE + ++P E G RDE E++ + + R ++
Sbjct: 682 MMPFLTSELYQAL----TGKEE-LALEAWP-EPGGRDEEAERAFEALKQAVTAVRALKAE 735
Query: 877 HNKPLKSPLR 886
P +R
Sbjct: 736 AGLPPAQEVR 745
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Query: 39 QPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEID 98
+P +V + PP TG H GH L +++D + RY+ M GF G D G+ + ++
Sbjct: 33 KPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVE 92
Query: 99 KTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQII----TRTGRWIDFRNDYKTMDL 154
+ L +K +G +K+ E V ++ EE I R G D+ + TMD
Sbjct: 93 RLL-LKEGKTRHDLGREKFLER----VWQWKEESGGTILKQLKRLGASADWSREAFTMDE 147
Query: 155 KFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFE 194
K +V + F++ Y +GL Y+ +++ + C+T LS+ E
Sbjct: 148 KRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLE 187
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
pdb|1WK8|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
Length = 194
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 107/254 (42%), Gaps = 73/254 (28%)
Query: 198 NYKDVPDPEIMVSFPIVGDP-----EKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNK 252
YK++ DP + V FP+ +P EKA+ + WTTTPWTLP N+A V+ +TY
Sbjct: 2 GYKEIQDPSVYVRFPL-KEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAF--- 57
Query: 253 YTGKIYVVAESRLSALPSEKPKSSAANGPGGDXXXXXXXXXXXXXXXAQDGELARSAENN 312
Q G+ A E
Sbjct: 58 ------------------------------------------------QVGDEALILEEG 69
Query: 313 ESYEKLGE------VFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHC 366
+ LGE F G L G Y P Y + F V+AD YV+ + GTGIVH
Sbjct: 70 LGRKLLGEGTPVLKTFPGKALEGLPYTP--PYPQALEKGYFVVLAD-YVSQEDGTGIVHQ 126
Query: 367 APAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAK 426
APAFG +D +E + G L+ VD++G + F G Y ++A++ I+ L+ +
Sbjct: 127 APAFGAED----LETARVY-GLPLLKTVDEEGKLL--VEPFKGLYFREANRAILRDLRGR 179
Query: 427 GRLVKTGSLTHSYP 440
G L K S HSYP
Sbjct: 180 GLLFKEESYLHSYP 193
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNY|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Post-Transfer Editing Substrate Analogue, Val-2aa
Length = 186
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 101/246 (41%), Gaps = 73/246 (29%)
Query: 204 DPEIMVSFPIVGDP-----EKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIY 258
DP + V FP+ +P EKA+ + WTTTPWTLP N+A V+ +TY
Sbjct: 3 DPSVYVRFPL-KEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAF--------- 52
Query: 259 VVAESRLSALPSEKPKSSAANGPGGDXXXXXXXXXXXXXXXAQDGELARSAENNESYEKL 318
Q G+ A E + L
Sbjct: 53 ------------------------------------------QVGDEALILEEGLGRKLL 70
Query: 319 GE------VFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGE 372
GE F G L G Y P Y + F V+AD YV+ + GTGIVH APAFG
Sbjct: 71 GEGTPVLKTFPGKALEGLPYTP--PYPQALEKGYFVVLAD-YVSQEDGTGIVHQAPAFGA 127
Query: 373 DDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKT 432
+D +E + G L+ VD++G + F G Y ++A++ I+ L+ +G L K
Sbjct: 128 ED----LETARVY-GLPLLKTVDEEGKLL--VEPFKGLYFREANRAILRDLRGRGLLFKE 180
Query: 433 GSLTHS 438
S HS
Sbjct: 181 ESYLHS 186
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
pdb|1UE0|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
Length = 182
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 98/239 (41%), Gaps = 73/239 (30%)
Query: 204 DPEIMVSFPIVGDP-----EKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIY 258
DP + V FP+ +P EKA+ + WTTTPWTLP N+A V+ +TY
Sbjct: 3 DPSVYVRFPL-KEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAF--------- 52
Query: 259 VVAESRLSALPSEKPKSSAANGPGGDXXXXXXXXXXXXXXXAQDGELARSAENNESYEKL 318
Q G+ A E + L
Sbjct: 53 ------------------------------------------QVGDEALILEEGLGRKLL 70
Query: 319 GE------VFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGE 372
GE F G L G Y P Y + F V+AD YV+ + GTGIVH APAFG
Sbjct: 71 GEGTQVLKTFPGKALEGLPYTP--PYPQALEKGYFVVLAD-YVSQEDGTGIVHQAPAFGA 127
Query: 373 DDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVK 431
+D +E + G L+ VD++G + F G Y ++A++ I+ L+ +G L K
Sbjct: 128 ED----LETARVY-GLPLLKTVDEEGKLL--VEPFKGLYFREANRAILRDLRGRGFLFK 179
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1UDZ|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
Length = 182
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 98/239 (41%), Gaps = 73/239 (30%)
Query: 204 DPEIMVSFPIVGDP-----EKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIY 258
DP + V FP+ +P EKA+ + WTTTPWTLP N+A V+ +TY
Sbjct: 3 DPSVYVRFPL-KEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAF--------- 52
Query: 259 VVAESRLSALPSEKPKSSAANGPGGDXXXXXXXXXXXXXXXAQDGELARSAENNESYEKL 318
Q G+ A E + L
Sbjct: 53 ------------------------------------------QVGDEALILEEGLGRKLL 70
Query: 319 GE------VFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGE 372
GE F G L G Y P Y + F V+AD YV+ + GTGIVH APAFG
Sbjct: 71 GEGTPVLKTFPGKALEGLPYTP--PYPQALEKGYFVVLAD-YVSQEDGTGIVHQAPAFGA 127
Query: 373 DDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVK 431
+D +E + G L+ VD++G + F G Y ++A++ I+ L+ +G L K
Sbjct: 128 ED----LETARVY-GLPLLKTVDEEGKLL--VEPFKGLYFREANRAILRDLRGRGFLFK 179
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 124/519 (23%), Positives = 204/519 (39%), Gaps = 134/519 (25%)
Query: 379 IENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHS 438
I QI KG I VD + C G A+++I+E KG +V
Sbjct: 143 IFKQIYKKGLAEIREVDVNWC--------PGLGTVLANEEIVE--NDKGEMVSE------ 186
Query: 439 YPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENA---- 494
R P+ + + W +++ ++LL++ W PD +K K NW+
Sbjct: 187 -----RGSFPVYKKPMKQWVLKITNYADRLLEDLNLLDW-PDSLK-KLQTNWIGKEEIDG 239
Query: 495 ------RDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHI 548
+DW +R R+WG P PV+ ED V +D+L +L H NI
Sbjct: 240 KITYKLQDWIFARQRYWGEPFPVYFDEDNN----VYLIDELVELP-------HMENI--- 285
Query: 549 TIPSSRG--------------PEFGLLRRIEDVFDCWFESGSMPYAYI-------HYPFE 587
+PS G + +R + W S AYI + P +
Sbjct: 286 -MPSGTGEGPLATNTEWVQYKKNNKIFKRDTNTMPQWAGSCWYYLAYIMKQEDGTYLPID 344
Query: 588 NA---EHFENNFPGQFIAEGLDQT-------RGW---FYTLMVLSTALFGKPAFRNLICN 634
+ E F P G + R W Y L ++ T K F+ LI
Sbjct: 345 SKKAYEAFSKWLPVDLYIGGQEHAVLHLLYARFWHKILYDLKIVPT----KEPFQKLINQ 400
Query: 635 GLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLY-LINSPVVRAETLRFKKDGVFAVV 693
G++L +DG+KMSK L N +P E+I ++GAD LR+Y + P+ +T ++ + V A
Sbjct: 401 GMILGKDGQKMSKSLGNVVNPDEIIQNFGADTLRVYEMFMGPL--TDTKKWNESTVEATY 458
Query: 694 KDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVR 753
K + V+ ++ IE + + +L K DQ+I S L+ +
Sbjct: 459 K---------WILRVKRIFQIFIEDKS-----KINSLHKD----DQFI-SEHNLLIKEIT 499
Query: 754 QEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKV 813
Q++E + ++ L+ F+++L ++ K LK D I ST+
Sbjct: 500 QDIEDLKFNIMISKLMIFVNSLYKKEKIYSLKPLK------DFAIMFSTI---------- 543
Query: 814 MAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKR 852
P +E L +++ E+ I F S+P E +
Sbjct: 544 ----APHISEELLESL------GEKEIMFQSWPTYENNK 572
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 30/209 (14%)
Query: 16 EEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLP-HYGHILAGTIKDIVTRYQS 74
E+K W AFKT + + ++ D P+ +G H GH T DI++RY+
Sbjct: 15 EKKWQTRWEKTKAFKTT---NKSKDKFYALDMFPYPSGSGLHVGHPEGYTATDIISRYKR 71
Query: 75 MMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQ 134
+ GF V GWD GLP E + + K+ + + +E + +
Sbjct: 72 LKGFDVLHPIGWDAFGLPAEQ--------------YALSSGKH---PQPFTLKNIENFRR 114
Query: 135 IITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFE 194
+ G D+ + T D + W+F Q+Y+KGL + + G T L+N E
Sbjct: 115 QLKSLGFSFDYEKEVNTTDPSYYRWTQWIFKQIYKKGLAEIREVDVNWCPGLGTVLANEE 174
Query: 195 AGQNYKDVPDPEIMV----SFPIVGDPEK 219
+N D MV SFP+ P K
Sbjct: 175 IVEN-----DKGEMVSERGSFPVYKKPMK 198
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 23/272 (8%)
Query: 9 DFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDI 68
+ +F EEK + W F+ + + ++ P+ +G H GH TI D+
Sbjct: 3 ELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDV 62
Query: 69 VTRYQSMMGFHVTRRFGWDCHGLP-------VENEIDKTLGIKRRDDVFQMG--IDKYNE 119
+ R++ M G++V W G P ++N KT+ I R DV+++ I E
Sbjct: 63 IARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYR--DVYKVPEEILWTFE 120
Query: 120 ACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDL-----KFMESVWWVFAQLYEKGLVY 174
+IV +++ ++ R G +D+ ++ T L KF+E W F +L EKG +
Sbjct: 121 DPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIE---WQFWKLKEKGYIV 177
Query: 175 KGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPE-IMVSFPIVGDPEKAAFVAWTTTPWTLP 233
KG + + TPL + + + +DVP + I++ F + + E A T P T+
Sbjct: 178 KGAHRVRWDPVVGTPLGDHDLMEG-EDVPILDYIIIKFELRENGEVIYLPAATLRPETVY 236
Query: 234 SNLALCVNANFTYV--KVRNKYTGKIYVVAES 263
+ VN N TYV KVR K + ++V++
Sbjct: 237 GVTNMWVNPNATYVKAKVRRKDKEETWIVSKE 268
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 31/254 (12%)
Query: 577 MPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAF-RNLICNG 635
+P IH E E FE +P + G D + A+F + + + + NG
Sbjct: 586 IPAEIIH---EMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNG 642
Query: 636 LVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKD 695
E G+KMSK N + ++ I + GAD +RLY++ S +++ V + K
Sbjct: 643 FGTLE-GQKMSKSKGNVLNFIDAIEENGADVVRLYIM-SLAEHDSDFDWRRKEVGKLRKQ 700
Query: 696 VFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQE 755
+ + L+ E++G +D L + L++ I T +L
Sbjct: 701 I-----ERFYELISQFAEYEVKGNVELKDIDRWMLHR----LNKAIKETTNAL------- 744
Query: 756 MEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMA 815
E +R T V + + N Y+R R +GR E R L TL +V + ++MA
Sbjct: 745 -EEFRTRTAVQWAFYSIMNDLRWYLR----RTEGRDDEAK-RYVLRTLADVWV---RLMA 795
Query: 816 PFTPFFTEALYQNM 829
PFTP E L++ +
Sbjct: 796 PFTPHICEELWEKL 809
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 23/272 (8%)
Query: 9 DFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDI 68
+ +F EEK + W F+ + + ++ P+ +G H GH TI D+
Sbjct: 3 ELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDV 62
Query: 69 VTRYQSMMGFHVTRRFGWDCHGLP-------VENEIDKTLGIKRRDDVFQMG--IDKYNE 119
+ R++ M G++V W G P ++N KT+ I R DV+++ I E
Sbjct: 63 IARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYR--DVYKVPEEILWTFE 120
Query: 120 ACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDL-----KFMESVWWVFAQLYEKGLVY 174
+IV +++ ++ R G +D+ ++ T L KF+E W F +L EKG +
Sbjct: 121 DPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIE---WQFWKLKEKGYIV 177
Query: 175 KGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPE-IMVSFPIVGDPEKAAFVAWTTTPWTLP 233
KG + + TPL + + + +DVP + I++ F + + E A T P T+
Sbjct: 178 KGAHRVRWDPVVGTPLGDHDLMEG-EDVPILDYIIIKFELRENGEVIYLPAATLRPETVY 236
Query: 234 SNLALCVNANFTYV--KVRNKYTGKIYVVAES 263
+ VN N TYV KVR K + ++V++
Sbjct: 237 GVTNMWVNPNATYVKAKVRRKDKEETWIVSKE 268
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 113/272 (41%), Gaps = 36/272 (13%)
Query: 577 MPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAF-RNLICNG 635
+P IH E E FE +P + G D + A+F + + + + NG
Sbjct: 586 IPAEIIH---EMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNG 642
Query: 636 LVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKD 695
E G+KMSK N + ++ I + GAD +RLY++ S +++ V + K
Sbjct: 643 FGTLE-GQKMSKSKGNVLNFIDAIEENGADVVRLYIM-SLAEHDSDFDWRRKEVGKLRKQ 700
Query: 696 VFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQE 755
+ + L+ E++G +D L + L++ I T +L
Sbjct: 701 I-----ERFYELISQFAEYEVKGNVELKDIDRWMLHR----LNKAIKETTNAL------- 744
Query: 756 MEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMA 815
E +R T V + + N Y+R R +GR E R L TL +V + ++MA
Sbjct: 745 -EEFRTRTAVQWAFYSIMNDLRWYLR----RTEGRDDEAK-RYVLRTLADVWV---RLMA 795
Query: 816 PFTPFFTEALYQNMRKVGSGSEESIHFCSFPK 847
PFTP E L++ + G E + +P+
Sbjct: 796 PFTPHICEELWEKL-----GGEGFVSLAKWPE 822
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 17/144 (11%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDD 108
P+ +G H GH+ T+ D++ R++ M G+ V GWD GLP EN K G+ +D
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALK-FGVHPKDW 100
Query: 109 VFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168
+ I + E+ R + Y +W++ +T T + ++ W+F +++
Sbjct: 101 TYA-NIRQAKESLRLMGILY--DWDREVT-------------TCEPEYYRWNQWIFLKMW 144
Query: 169 EKGLVYKGFKVMPYSTGCKTPLSN 192
EKGL Y+ ++ + C+T L+N
Sbjct: 145 EKGLAYRAKGLVNWCPKCQTVLAN 168
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 104/290 (35%), Gaps = 79/290 (27%)
Query: 304 ELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGI 363
E+ R AE E K G VF GAY + + + +YV GTG
Sbjct: 292 EIERQAEGRE---KTG-VFLGAYALNPA-----------TGERIPIWTADYVLFGYGTGA 336
Query: 364 VHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEAL 423
+ PA + DY + G K+ + G + + + E
Sbjct: 337 IMAVPAHDQRDYEFARKF----------------GLPIKKVIERPGEPLPEPLERAYE-- 378
Query: 424 KAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVK 483
+ G + +S PF +++ R V +W L+EK L + TY
Sbjct: 379 -------EPGIMVNSGPFD-GTESEEGKRKVIAW------LEEKGLGKGRVTY------- 417
Query: 484 EKRFHNWLENARDWAVSRSRFWGTPLPVWTSE--------DGEEIIVVDSVDKLEKLSGE 535
RDW +SR R+WGTP+P+ E + E +++ + +E + +
Sbjct: 418 ---------RLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPK 468
Query: 536 KIFDLHRH-NIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHY 584
L H T P GP +R D D +F+S + Y+ Y
Sbjct: 469 GKSPLEAHPEFYETTCPKCGGP----AKRDTDTMDTFFDSS---WYYLRY 511
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 442 CWR-SDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVK 483
CWR DTP+ R + W++R+ E+LL + + W P+ VK
Sbjct: 176 CWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNW-PEKVK 217
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 17/144 (11%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDD 108
P+ +G H GH+ T+ D++ R++ M G+ V GWD GLP EN K G+ +D
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALK-FGVHPKDW 100
Query: 109 VFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168
+ I + E+ R + Y +W++ +T T + ++ W+F +++
Sbjct: 101 TYA-NIRQAKESLRLMGILY--DWDREVT-------------TCEPEYYRWNQWIFLKMW 144
Query: 169 EKGLVYKGFKVMPYSTGCKTPLSN 192
EKGL Y+ ++ + C+T L+N
Sbjct: 145 EKGLAYRAKGLVNWCPKCQTVLAN 168
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 104/290 (35%), Gaps = 79/290 (27%)
Query: 304 ELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGI 363
E+ R AE E K G VF GAY + + + +YV GTG
Sbjct: 292 EIERQAEGRE---KTG-VFLGAYALNPA-----------TGERIPIWTADYVLFGYGTGA 336
Query: 364 VHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEAL 423
+ PA + DY + G K+ + G + + + E
Sbjct: 337 IMAVPAHDQRDYEFARKF----------------GLPIKKVIERPGEPLPEPLERAYE-- 378
Query: 424 KAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVK 483
+ G + +S PF +++ R V +W L+EK L + TY
Sbjct: 379 -------EPGIMVNSGPFD-GTESEEGKRKVIAW------LEEKGLGKGRVTY------- 417
Query: 484 EKRFHNWLENARDWAVSRSRFWGTPLPVWTSE--------DGEEIIVVDSVDKLEKLSGE 535
RDW +SR R+WGTP+P+ E + E +++ + +E + +
Sbjct: 418 ---------RLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPK 468
Query: 536 KIFDLHRH-NIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHY 584
L H T P GP +R D D +F+S + Y+ Y
Sbjct: 469 GKSPLEAHPEFYETTCPKCGGP----AKRDTDTMDTFFDSS---WYYLRY 511
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 442 CWR-SDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVK 483
CWR DTP+ R + W++R+ E+LL + + W P+ VK
Sbjct: 176 CWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNW-PEKVK 217
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 73/189 (38%), Gaps = 43/189 (22%)
Query: 16 EEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSM 75
E K+ W+ F+ D ++ +Y P+ +G H GH+ TI D++ RYQ M
Sbjct: 31 ESKVQLHWDEKRTFEVTEDESK--EKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRM 88
Query: 76 MGFHVTRRFGWDCHGLPVENEI------------DKTLGIKRRDDVFQMGIDKYNEACRS 123
+G +V + GWD GLP E D +K + + G D E
Sbjct: 89 LGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATC 148
Query: 124 IVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYS 183
Y WEQ KF F +LY+KGLVYK + +
Sbjct: 149 TPEYY--RWEQ--------------------KF-------FTELYKKGLVYKKTSAVNWC 179
Query: 184 TGCKTPLSN 192
+T L+N
Sbjct: 180 PNDQTVLAN 188
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 148/402 (36%), Gaps = 102/402 (25%)
Query: 495 RDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSR 554
RDW VSR R+WG P+P+ T EDG + D D+L + E + +D IT P
Sbjct: 438 RDWGVSRQRYWGAPIPMVTLEDGTVMPTPD--DQLPVILPEDVV------MDGITSPIKA 489
Query: 555 GPEFGLLR-------RIEDVFDCWFESGSMPYAYIHYP-----FENAEHFENNFPGQFIA 602
PE+ R D FD + ES S YA P ++E P
Sbjct: 490 DPEWAKTTVNGMPALRETDTFDTFMES-SWYYARYTCPQYKEGMLDSEAANYWLPVDIYI 548
Query: 603 EGLDQTR------GWFYTLMVLSTALFGKPAFRNLICNGLVLA-------EDGK------ 643
G++ +F+ LM + + + L+C G+VLA E+G+
Sbjct: 549 GGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSP 608
Query: 644 ------------------------------KMSKKLKNYPSPVEVINDYGADALRLYLI- 672
KMSK N P ++ YGAD +RL+++
Sbjct: 609 VDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMF 668
Query: 673 NSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRL-EIEGGAPFIPLDLATLQ 731
SP TL +++ GV A RFL + K + E L++ L
Sbjct: 669 ASPA--DMTLEWQESGV-----------EGANRFLKRVWKLVYEHTAKGDVAALNVDALT 715
Query: 732 KSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRS 791
++ L + ++ + + + T + +++ ++ L
Sbjct: 716 ENQKALRRDVHKTIAKVTDDIGRRQ---TFNTAIAAIMELMNKLAKAPT----------D 762
Query: 792 GEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVG 833
GE D + + LL +++ PFTP L+Q ++ G
Sbjct: 763 GEQD----RALMQEALLAVVRMLNPFTPHICFTLWQELKGEG 800
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 442 CWRSDTPLIYRAVPSWFVRVETLKEKLLDN-NKQTYWVPDYVKEKRFHNWL 491
CWR DT + + +P WF+++ ++LL++ +K +W PD VK + NW+
Sbjct: 196 CWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHW-PDTVKTMQ-RNWI 244
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 548 ITIPSSRGPEFGLLRRIED-VFDCWFESGSMPYAYIHYPFENAEHFENNFPG--QFIAEG 604
I+ P SR P L E+ V WF++ + + YP E + +P I +
Sbjct: 203 ISRPKSRVPWGIPLPWDENHVTAVWFDALLNYVSALDYP--EGEAYRTFWPHAWHLIGKD 260
Query: 605 LDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGA 664
+ + F+ M+ + G P +R+L G +L DG+KMSK L N P ++ YG
Sbjct: 261 ILKPHAVFWPTMLKAA---GIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGR 317
Query: 665 DALRLYLINS 674
DALR YL+
Sbjct: 318 DALRYYLLRE 327
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 41 EYVFYDGPP--FATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHG 90
E VFY P + PH GH + D + R+ + G+ G D HG
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 548 ITIPSSRGPEFGLLRRIED-VFDCWFESGSMPYAYIHYPFENAEHFENNFPG--QFIAEG 604
I+ P SR P L E+ V WF++ + + YP E + +P I +
Sbjct: 203 ISRPKSRVPWGIPLPWDENHVTYVWFDALLNYVSALDYP--EGEAYRTFWPHAWHLIGKD 260
Query: 605 LDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGA 664
+ + F+ M+ + G P +R+L G +L DG+KMSK L N P ++ YG
Sbjct: 261 ILKPHAVFWPTMLKAA---GIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGR 317
Query: 665 DALRLYLINS 674
DALR YL+
Sbjct: 318 DALRYYLLRE 327
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 41 EYVFYDGPP--FATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHG 90
E VFY P + PH GH + D + R+ + G+ G D HG
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 570 CWFESGSMPYAYIHYPFENAEHFENNFPG--QFIAEGLDQTRGWFYTLMVLSTALFGKPA 627
WF++ + + YP E + +P I + + + F+ M+ + G P
Sbjct: 226 VWFDALLNYVSALDYP--EGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAA---GIPM 280
Query: 628 FRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674
+R+L G +L DG+KMSK L N P ++ YG DALR YL+
Sbjct: 281 YRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLRE 327
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 41 EYVFYDGPP--FATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHG 90
E VFY P + PH GH + D + R+ + G+ G D HG
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 21/158 (13%)
Query: 44 FYDGPP--FATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTL 101
FY P + +PH GH D + RY + + V G D HGL ++ + ++ L
Sbjct: 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE-L 65
Query: 102 GIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVW 161
GI ++ V D+ E R+ + WE + ++I +T D ++ V
Sbjct: 66 GISPKELV-----DRNAE-------RFKKLWEFLKIEYTKFI------RTTDPYHVKFVQ 107
Query: 162 WVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNY 199
VF + Y++G +Y G Y GC+ S E +++
Sbjct: 108 KVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDH 145
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 641 DGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFA 691
+GKKMSK L N P EV+ +YG D +R +L+ + F +DG F+
Sbjct: 292 EGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLRE-------VPFGQDGDFS 335
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 451 YRAVPSWFVRVETLKEKLLD--NNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRF---W 505
Y PS+F R+ ++KLL+ + PDY + + + +D +V+R R W
Sbjct: 156 YIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKW 215
Query: 506 GTPLP 510
G P+P
Sbjct: 216 GIPVP 220
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli
Complexed With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Complexed With Methionine And Adenosine
Length = 551
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPV 93
P+A G H GH+L D+ RYQ M G V D HG P+
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPI 58
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna
Synthetase Complexed With Methionine
Length = 551
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPV 93
P+A G H GH+L D+ RYQ M G V D HG P+
Sbjct: 15 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPI 59
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPV 93
P+A G H GH+L D+ RYQ M G V D HG P+
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPI 58
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPV 93
P+A G H GH+L D+ RYQ M G V D HG P+
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPI 71
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 49 PFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPV 93
P+A G H GH+L D+ RYQ M G V D HG P+
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPI 58
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 565 EDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTL---MVLSTA 621
+ V W ++ + + +P +E F +P G D R F+T+ L +A
Sbjct: 233 DHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIR--FHTVYWPAFLMSA 290
Query: 622 LFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAET 681
G P + + +G +L G+KMSK + N PV +++ +G D +R +L+
Sbjct: 291 --GLPLPKRIFAHGWLLNR-GEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLRE------- 340
Query: 682 LRFKKDGVF 690
+ F +DG +
Sbjct: 341 VPFGQDGSY 349
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 50 FATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGI------ 103
+ G+PH GH D + R++ + G+ V G D HG + K GI
Sbjct: 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKE-GIPAAELA 80
Query: 104 KRRDDVFQMGIDKYN 118
+R DVFQ +K N
Sbjct: 81 RRNSDVFQRLQEKLN 95
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 25/119 (21%)
Query: 324 GAYLVGKKYEPLFDYFKEFSDVAFRVIADNY-----------VTSDSGTG-----IVHCA 367
G + GKKY F+ +DVA RVIAD+ + S+ G G I+ A
Sbjct: 249 GEEVSGKKYGEKFE-----TDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRA 303
Query: 368 PAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKIT-DFSGRYVKDADKDIIEALKA 425
FG Y++ IEN + KG +L+V + + +++ +F VK +K I+ LKA
Sbjct: 304 MRFG---YKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKA 359
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 25/119 (21%)
Query: 324 GAYLVGKKYEPLFDYFKEFSDVAFRVIADNY-----------VTSDSGTG-----IVHCA 367
G + GKKY F+ +DVA RVIAD+ + S+ G G I+ A
Sbjct: 248 GEEVSGKKYGEKFE-----TDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRA 302
Query: 368 PAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKIT-DFSGRYVKDADKDIIEALKA 425
FG Y++ IEN + KG +L+V + + +++ +F VK +K I+ LKA
Sbjct: 303 MRFG---YKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKA 358
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 41 EYVFYDGPP--FATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPV 93
E VF+ P + PH GH+ + I D++ RY + G V G D HG V
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV 62
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 624 GKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI 672
G P + ++ +G +D KK+SK L N PVE ++G DAL+ +L+
Sbjct: 304 GLPLPKKIVAHGW-WTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 41 EYVFYDGPP--FATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPV 93
E VF+ P + PH GH+ + I D++ RY + G V G D HG V
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV 62
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 624 GKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI 672
G P + ++ +G +D KK+SK L N PVE ++G DAL+ +L+
Sbjct: 304 GLPLPKKIVAHGW-WTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 41 EYVFYDGPP--FATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPV 93
E VF+ P + PH GH+ + I D++ RY + G V G D HG V
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV 62
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 624 GKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI 672
G P + ++ +G +D KK+SK L N PVE ++G DAL+ +L+
Sbjct: 304 GLPLPKKIVAHGW-WTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 25/119 (21%)
Query: 324 GAYLVGKKYEPLFDYFKEFSDVAFRVIADNY-----------VTSDSGTGIVHCAPA--- 369
G + GKKY F+ +DVA RVIAD+ + S+ G G V
Sbjct: 249 GEEVSGKKYGEKFE-----TDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRA 303
Query: 370 --FGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKIT-DFSGRYVKDADKDIIEALKA 425
FG Y++ IEN + KG +L+V + + +++ +F VK +K I+ LKA
Sbjct: 304 XRFG---YKLGIENPFLYKGVDLVVDIXKEPYPELELSREFVKGIVKGEEKRFIKTLKA 359
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 598 GQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVE 657
I + + + ++ ++S L P + + +G + G+KMSK + N P E
Sbjct: 279 AHIIGKDISRFHAVYWPAFLMSAQL---PLPKRVFAHGFLFNR-GEKMSKSVGNVIDPFE 334
Query: 658 VINDYGADALRLYLINSPVVRAETLRFKKDGVFA 691
++ YG D LR +L+ + F +DG ++
Sbjct: 335 LVERYGLDQLRYFLMRE-------VPFGQDGSYS 361
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 30 KTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCH 89
+TQ + + +Y + G PH GH D + R+Q + G V G D H
Sbjct: 15 QTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEH 74
Query: 90 GLPVENEIDKTLGIKRRD 107
G+ + K GI RD
Sbjct: 75 GIKMLQSARKE-GITPRD 91
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 447 TPLIYRAVPSWFVRVETLKEKLLD--NNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRF 504
TP+ + S+F R+ ++KLLD N + +P + + +D ++SR+ F
Sbjct: 175 TPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTF 234
Query: 505 -WGTPLP 510
WG P+P
Sbjct: 235 DWGIPVP 241
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 590 EHFENNFPGQFIAEGLD--QTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSK 647
H N +P G D + ++ ++S L P L+ +G +D KK+SK
Sbjct: 287 HHALNRWPADVHVVGKDILKFHAIYWPAFLMSAEL---PLPERLVSHGW-WTKDHKKISK 342
Query: 648 KLKNYPSPVEVINDYGADALRLYLI 672
L N PVE ++G DAL+ +L+
Sbjct: 343 SLGNAFDPVEKAKEFGIDALKYFLM 367
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 43 VFYDGPP--FATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPV 93
VF+ P + PH GH+ + I D++ RY + G V G D HG V
Sbjct: 27 VFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKV 79
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 42 YVFYDGPPFATGLPHYGHILAGTI-KDIVTRYQSMMGFHVTRRFGWDCHGLPV 93
Y+ P+A G H GH+ + DI RY + G V G D HG P+
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPI 56
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 440 PFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENA-RDWA 498
P C P+ +R ++++++ E+L ++ W P+ + +W+E + A
Sbjct: 171 PRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNV--KNMVLSWIEEGLEERA 228
Query: 499 VSRSRFWGTPLPV 511
++R WG P+P+
Sbjct: 229 ITRDLNWGIPVPL 241
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Query: 562 RRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTA 621
++I D W PY P F P ++ EG+DQ GW ++V
Sbjct: 22 KKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQ--GWLAAMIVTEEI 79
Query: 622 LFGKPAFR------NLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYG 663
G A R L C +L + + KK S E + +G
Sbjct: 80 ARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFG 127
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 497 WAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGP 556
W V +G + G ++I D ++++E+L+G+K R NI
Sbjct: 7 WEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNI----------- 55
Query: 557 EFGLLRRIEDVFDCWFESGSMPYAY 581
F R E + D + E G + Y Y
Sbjct: 56 -FLSHRDFEKILDVY-EKGELFYLY 78
>pdb|2G02|A Chain A, Nisin Cyclase
pdb|2G0D|A Chain A, Nisin Cyclase
Length = 409
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 719 GAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVP 766
GA I L + L++ ++S + + +FVR+++EG+ L + P
Sbjct: 84 GAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITP 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,527,131
Number of Sequences: 62578
Number of extensions: 1617306
Number of successful extensions: 3719
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3607
Number of HSP's gapped (non-prelim): 89
length of query: 1193
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1083
effective length of database: 8,089,757
effective search space: 8761206831
effective search space used: 8761206831
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)