Query 000999
Match_columns 1193
No_of_seqs 538 out of 3437
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 12:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0434 Isoleucyl-tRNA synthet 100.0 4E-279 9E-284 2330.9 77.4 1061 1-1114 1-1069(1070)
2 PLN02882 aminoacyl-tRNA ligase 100.0 1E-257 3E-262 2445.6 115.4 1155 4-1189 2-1159(1159)
3 PTZ00427 isoleucine-tRNA ligas 100.0 4E-237 9E-242 2243.7 105.5 1061 3-1113 67-1204(1205)
4 COG0060 IleS Isoleucyl-tRNA sy 100.0 2E-218 4E-223 1981.5 63.9 904 9-1037 17-933 (933)
5 PRK06039 ileS isoleucyl-tRNA s 100.0 2E-214 4E-219 2041.2 99.4 963 8-1114 9-975 (975)
6 COG0525 ValS Valyl-tRNA synthe 100.0 6E-183 1E-187 1647.5 74.8 807 8-957 3-833 (877)
7 PRK13804 ileS isoleucyl-tRNA s 100.0 8E-173 2E-177 1645.4 78.1 830 9-921 23-896 (961)
8 PLN02381 valyl-tRNA synthetase 100.0 1E-172 2E-177 1649.8 76.0 834 8-958 98-1017(1066)
9 TIGR00392 ileS isoleucyl-tRNA 100.0 1E-172 3E-177 1648.4 73.9 818 9-894 5-853 (861)
10 TIGR00422 valS valyl-tRNA synt 100.0 5E-172 1E-176 1640.9 78.1 813 8-956 3-834 (861)
11 PRK05743 ileS isoleucyl-tRNA s 100.0 7E-172 1E-176 1634.6 72.8 819 9-921 18-856 (912)
12 PTZ00419 valyl-tRNA synthetase 100.0 2E-170 4E-175 1641.2 78.3 834 8-958 26-949 (995)
13 PLN02843 isoleucyl-tRNA synthe 100.0 4E-170 8E-175 1620.0 77.1 830 9-921 2-899 (974)
14 PRK14900 valS valyl-tRNA synth 100.0 1E-169 2E-174 1626.4 78.7 818 8-957 17-861 (1052)
15 PRK05729 valS valyl-tRNA synth 100.0 6E-169 1E-173 1610.3 79.5 806 8-958 7-831 (874)
16 PLN02943 aminoacyl-tRNA ligase 100.0 8E-168 2E-172 1598.8 79.1 820 8-958 59-909 (958)
17 PRK13208 valS valyl-tRNA synth 100.0 3E-162 7E-167 1539.5 75.4 782 1-924 3-791 (800)
18 KOG0432 Valyl-tRNA synthetase 100.0 6E-155 1E-159 1360.3 65.0 828 8-958 44-950 (995)
19 PRK12300 leuS leucyl-tRNA synt 100.0 1E-149 3E-154 1427.2 65.2 777 55-961 1-841 (897)
20 PLN02959 aminoacyl-tRNA ligase 100.0 1E-148 3E-153 1431.3 73.2 774 8-883 11-926 (1084)
21 PF00133 tRNA-synt_1: tRNA syn 100.0 5E-149 1E-153 1375.0 42.5 598 18-685 1-601 (601)
22 TIGR00395 leuS_arch leucyl-tRN 100.0 1E-143 3E-148 1377.4 70.2 763 14-896 2-835 (938)
23 KOG0433 Isoleucyl-tRNA synthet 100.0 5E-140 1E-144 1209.4 59.1 750 9-851 29-813 (937)
24 PRK00390 leuS leucyl-tRNA synt 100.0 1E-130 3E-135 1240.9 48.1 656 8-851 3-738 (805)
25 PLN02563 aminoacyl-tRNA ligase 100.0 2E-130 4E-135 1240.1 48.4 664 8-851 78-890 (963)
26 TIGR00396 leuS_bact leucyl-tRN 100.0 3E-130 7E-135 1238.3 50.6 663 10-851 1-775 (842)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 3.1E-99 7E-104 922.7 41.9 700 9-851 4-748 (814)
28 KOG0435 Leucyl-tRNA synthetase 100.0 2.2E-88 4.7E-93 775.3 38.3 659 12-851 32-797 (876)
29 cd00817 ValRS_core catalytic c 100.0 3.7E-88 8E-93 792.1 34.6 380 40-684 1-382 (382)
30 PRK12268 methionyl-tRNA synthe 100.0 2.4E-83 5.2E-88 790.3 41.1 513 40-848 3-521 (556)
31 KOG0437 Leucyl-tRNA synthetase 100.0 2.3E-80 5.1E-85 711.8 45.8 742 11-851 13-885 (1080)
32 TIGR00398 metG methionyl-tRNA 100.0 5.6E-81 1.2E-85 765.0 43.6 488 42-831 1-503 (530)
33 PRK12267 methionyl-tRNA synthe 100.0 1.4E-80 3.1E-85 775.3 43.0 465 40-831 4-478 (648)
34 PRK11893 methionyl-tRNA synthe 100.0 6.5E-79 1.4E-83 745.7 43.9 468 40-831 1-476 (511)
35 PRK00133 metG methionyl-tRNA s 100.0 5.1E-77 1.1E-81 743.9 43.9 486 40-831 2-503 (673)
36 PLN02610 probable methionyl-tR 100.0 1.9E-76 4.2E-81 739.2 42.9 500 37-831 14-532 (801)
37 cd00818 IleRS_core catalytic c 100.0 8.4E-77 1.8E-81 685.3 32.1 338 40-684 1-338 (338)
38 PLN02224 methionine-tRNA ligas 100.0 1.2E-74 2.5E-79 704.1 45.1 465 38-831 67-546 (616)
39 COG0143 MetG Methionyl-tRNA sy 100.0 1.1E-72 2.4E-77 671.3 43.8 493 39-832 4-513 (558)
40 cd00668 Ile_Leu_Val_MetRS_core 100.0 6.3E-65 1.4E-69 583.0 29.4 312 41-684 1-312 (312)
41 KOG0436 Methionyl-tRNA synthet 100.0 1.6E-59 3.4E-64 513.7 32.2 472 38-831 37-527 (578)
42 PF09334 tRNA-synt_1g: tRNA sy 100.0 1.7E-57 3.6E-62 532.2 17.9 376 42-711 1-390 (391)
43 cd00814 MetRS_core catalytic c 100.0 2.1E-55 4.5E-60 505.0 26.9 312 41-684 1-319 (319)
44 cd00812 LeuRS_core catalytic c 100.0 9E-54 1.9E-58 489.8 21.5 297 41-686 1-314 (314)
45 KOG1247 Methionyl-tRNA synthet 100.0 1.7E-42 3.7E-47 379.4 21.5 494 38-831 12-520 (567)
46 PRK00260 cysS cysteinyl-tRNA s 100.0 5.1E-38 1.1E-42 376.5 27.8 155 597-781 220-375 (463)
47 PTZ00399 cysteinyl-tRNA-synthe 100.0 3.4E-33 7.4E-38 343.6 44.6 169 596-781 267-437 (651)
48 TIGR00435 cysS cysteinyl-tRNA 100.0 6.4E-34 1.4E-38 340.2 26.6 154 597-774 219-373 (465)
49 TIGR03447 mycothiol_MshC cyste 100.0 1.1E-31 2.4E-36 310.6 19.8 141 598-774 242-384 (411)
50 PRK12418 cysteinyl-tRNA synthe 100.0 2.5E-31 5.5E-36 306.5 21.5 147 597-780 214-362 (384)
51 PRK14536 cysS cysteinyl-tRNA s 100.0 3.1E-29 6.7E-34 297.2 26.6 125 41-185 23-157 (490)
52 PLN02946 cysteine-tRNA ligase 100.0 2.8E-29 6E-34 300.1 22.2 165 598-781 278-443 (557)
53 PRK14535 cysS cysteinyl-tRNA s 100.0 4.2E-28 9.1E-33 290.3 25.1 125 42-186 249-374 (699)
54 PRK01611 argS arginyl-tRNA syn 100.0 2E-26 4.4E-31 280.3 34.1 118 38-174 109-226 (507)
55 PRK14534 cysS cysteinyl-tRNA s 100.0 4.2E-27 9E-32 277.6 24.6 125 42-186 22-156 (481)
56 cd00672 CysRS_core catalytic c 99.9 1.4E-27 3.1E-32 257.0 15.4 86 597-685 128-213 (213)
57 cd00674 LysRS_core_class_I cat 99.9 2E-26 4.4E-31 263.6 22.6 124 39-173 18-149 (353)
58 cd07961 Anticodon_Ia_Ile_ABEc 99.9 1.7E-24 3.7E-29 229.7 19.3 182 684-871 1-183 (183)
59 PRK00750 lysK lysyl-tRNA synth 99.9 7.6E-23 1.6E-27 247.2 19.6 100 38-146 21-128 (510)
60 cd07960 Anticodon_Ia_Ile_BEm A 99.9 1.7E-22 3.7E-27 213.8 19.0 176 684-870 1-179 (180)
61 COG0215 CysS Cysteinyl-tRNA sy 99.9 3.5E-22 7.6E-27 230.6 21.5 148 599-775 223-371 (464)
62 PF08264 Anticodon_1: Anticodo 99.9 2.9E-22 6.2E-27 206.2 15.0 149 738-888 1-152 (153)
63 PF01406 tRNA-synt_1e: tRNA sy 99.8 7.7E-21 1.7E-25 210.0 8.8 124 41-184 8-132 (300)
64 TIGR00456 argS arginyl-tRNA sy 99.8 2E-17 4.3E-22 204.0 35.7 206 601-819 332-563 (566)
65 KOG2007 Cysteinyl-tRNA synthet 99.8 3.2E-17 6.9E-22 186.2 29.0 168 598-784 259-428 (586)
66 TIGR00467 lysS_arch lysyl-tRNA 99.7 9.9E-17 2.2E-21 192.7 22.0 96 40-144 18-121 (515)
67 PF13603 tRNA-synt_1_2: Leucyl 99.7 7.2E-17 1.6E-21 168.7 6.7 164 205-424 8-185 (185)
68 COG0018 ArgS Arginyl-tRNA synt 99.6 6.8E-13 1.5E-17 161.3 39.1 179 632-819 371-574 (577)
69 cd07962 Anticodon_Ia_Val Antic 99.6 1.1E-14 2.4E-19 146.8 14.9 134 684-829 1-135 (135)
70 PRK12451 arginyl-tRNA syntheta 99.6 1.1E-12 2.4E-17 161.5 35.3 175 630-818 358-558 (562)
71 cd00671 ArgRS_core catalytic c 99.6 1.1E-14 2.4E-19 158.2 12.3 121 43-185 3-123 (212)
72 PLN02286 arginine-tRNA ligase 99.6 9.3E-12 2E-16 153.5 37.5 180 630-819 364-573 (576)
73 cd07957 Anticodon_Ia_Met Antic 99.5 1.1E-13 2.4E-18 137.8 12.9 95 734-829 34-129 (129)
74 cd07959 Anticodon_Ia_Leu_AEc A 99.5 3.4E-13 7.3E-18 132.2 13.1 84 734-829 33-117 (117)
75 cd07958 Anticodon_Ia_Leu_BEm A 99.4 3.6E-12 7.9E-17 124.6 12.4 117 684-829 1-117 (117)
76 cd07375 Anticodon_Ia_like Anti 99.1 4.7E-10 1E-14 109.2 12.7 116 687-818 2-117 (117)
77 cd00802 class_I_aaRS_core cata 99.0 6.3E-10 1.4E-14 113.4 7.9 76 45-137 2-77 (143)
78 COG1384 LysS Lysyl-tRNA synthe 98.9 3.6E-08 7.9E-13 115.3 17.6 96 40-142 19-122 (521)
79 PF00750 tRNA-synt_1d: tRNA sy 98.2 6.4E-06 1.4E-10 96.6 11.3 137 38-176 18-193 (354)
80 PF01921 tRNA-synt_1f: tRNA sy 97.8 2.6E-05 5.6E-10 89.6 7.1 89 596-685 233-323 (360)
81 cd09287 GluRS_non_core catalyt 97.7 4.5E-05 9.7E-10 83.6 6.7 92 47-175 6-97 (240)
82 PRK04156 gltX glutamyl-tRNA sy 97.6 0.00018 3.8E-09 88.0 10.4 131 9-176 60-198 (567)
83 TIGR00463 gltX_arch glutamyl-t 97.4 0.00032 6.9E-09 85.7 7.9 95 43-176 94-188 (560)
84 PLN03233 putative glutamate-tR 97.2 0.00064 1.4E-08 82.3 7.9 95 43-176 12-106 (523)
85 PF00750 tRNA-synt_1d: tRNA sy 97.2 0.00022 4.8E-09 83.8 3.7 63 598-662 240-306 (354)
86 cd00807 GlnRS_core catalytic c 97.2 0.0012 2.5E-08 72.4 8.8 90 47-175 6-95 (238)
87 TIGR03838 queuosine_YadB gluta 97.2 0.0008 1.7E-08 75.6 7.5 90 48-176 6-96 (272)
88 PRK12558 glutamyl-tRNA synthet 97.1 0.0011 2.3E-08 79.4 8.4 91 47-176 7-97 (445)
89 PTZ00437 glutaminyl-tRNA synth 97.1 0.0013 2.8E-08 79.8 9.1 95 43-176 52-146 (574)
90 PTZ00402 glutamyl-tRNA synthet 97.1 0.0013 2.8E-08 80.5 8.9 93 43-174 53-146 (601)
91 PF00749 tRNA-synt_1c: tRNA sy 97.1 0.0011 2.4E-08 76.5 7.6 90 48-176 7-97 (314)
92 PRK14895 gltX glutamyl-tRNA sy 97.0 0.0018 4E-08 78.3 8.5 92 46-176 8-100 (513)
93 PRK05710 glutamyl-Q tRNA(Asp) 97.0 0.0017 3.6E-08 73.9 7.4 93 45-176 8-101 (299)
94 TIGR00440 glnS glutaminyl-tRNA 96.9 0.0019 4.1E-08 78.4 8.3 91 47-176 5-96 (522)
95 PLN02907 glutamate-tRNA ligase 96.9 0.0025 5.4E-08 80.9 9.3 94 43-175 214-307 (722)
96 PRK12410 glutamylglutaminyl-tR 96.9 0.002 4.3E-08 76.7 7.7 90 48-176 5-94 (433)
97 COG0008 GlnS Glutamyl- and glu 96.9 0.0021 4.5E-08 77.4 7.9 95 43-176 10-105 (472)
98 TIGR00464 gltX_bact glutamyl-t 96.8 0.0023 4.9E-08 77.8 7.9 90 48-176 7-97 (470)
99 PLN02859 glutamine-tRNA ligase 96.7 0.0048 1E-07 77.6 9.3 95 43-176 265-359 (788)
100 cd00808 GluRS_core catalytic c 96.7 0.0039 8.5E-08 68.8 7.3 86 47-171 6-100 (239)
101 cd00418 GlxRS_core catalytic c 96.6 0.0045 9.9E-08 67.8 7.0 86 47-171 6-92 (230)
102 PRK14703 glutaminyl-tRNA synth 96.5 0.0054 1.2E-07 77.9 8.1 95 43-176 32-127 (771)
103 PRK01406 gltX glutamyl-tRNA sy 96.5 0.0074 1.6E-07 73.5 8.8 128 45-214 7-159 (476)
104 PLN02627 glutamyl-tRNA synthet 96.5 0.0062 1.3E-07 74.0 7.9 95 43-176 46-149 (535)
105 PRK05347 glutaminyl-tRNA synth 96.4 0.0084 1.8E-07 73.1 8.7 95 43-176 30-125 (554)
106 PF01921 tRNA-synt_1f: tRNA sy 96.1 0.00078 1.7E-08 77.7 -2.1 143 39-190 22-184 (360)
107 PLN02563 aminoacyl-tRNA ligase 95.6 0.016 3.5E-07 76.0 6.4 79 413-493 211-303 (963)
108 TIGR00396 leuS_bact leucyl-tRN 95.3 0.023 5E-07 74.1 6.2 80 414-494 130-224 (842)
109 cd07956 Anticodon_Ia_Arg Antic 95.2 0.48 1E-05 49.1 14.7 146 660-815 1-149 (156)
110 PRK13354 tyrosyl-tRNA syntheta 95.0 0.019 4.1E-07 68.7 3.8 58 595-657 184-243 (410)
111 cd00395 Tyr_Trp_RS_core cataly 94.4 0.062 1.4E-06 60.9 6.0 54 596-654 152-208 (273)
112 cd00802 class_I_aaRS_core cata 94.2 0.056 1.2E-06 55.0 4.8 50 598-649 94-143 (143)
113 cd00805 TyrRS_core catalytic c 94.2 0.032 6.9E-07 63.2 3.0 90 577-673 132-221 (269)
114 PRK00390 leuS leucyl-tRNA synt 94.1 0.063 1.4E-06 70.0 5.9 100 413-514 132-247 (805)
115 COG0495 LeuS Leucyl-tRNA synth 93.4 0.046 1E-06 69.7 2.8 92 394-492 120-227 (814)
116 PRK05912 tyrosyl-tRNA syntheta 93.3 0.042 9.1E-07 65.8 2.1 74 595-673 186-259 (408)
117 TIGR00233 trpS tryptophanyl-tR 93.2 0.37 8.1E-06 56.1 9.6 73 596-673 138-217 (328)
118 TIGR00464 gltX_bact glutamyl-t 92.8 0.36 7.9E-06 59.0 9.1 73 597-673 197-270 (470)
119 cd00418 GlxRS_core catalytic c 92.5 0.53 1.1E-05 51.9 9.0 46 629-675 138-184 (230)
120 KOG0435 Leucyl-tRNA synthetase 91.9 0.056 1.2E-06 65.6 0.7 50 440-492 199-249 (876)
121 KOG4426 Arginyl-tRNA synthetas 91.9 1.3 2.7E-05 51.7 11.3 147 39-191 187-370 (656)
122 PF00579 tRNA-synt_1b: tRNA sy 91.6 0.16 3.5E-06 58.3 3.9 62 596-657 148-212 (292)
123 TIGR00234 tyrS tyrosyl-tRNA sy 91.5 0.17 3.7E-06 60.1 4.1 76 577-656 158-233 (377)
124 PRK12556 tryptophanyl-tRNA syn 91.4 0.23 5E-06 57.8 5.0 59 595-654 147-212 (332)
125 KOG1148 Glutaminyl-tRNA synthe 90.9 0.37 8E-06 58.0 6.0 95 43-176 249-343 (764)
126 PRK04156 gltX glutamyl-tRNA sy 90.9 0.32 7E-06 60.2 5.7 67 629-697 324-406 (567)
127 KOG1149 Glutamyl-tRNA syntheta 90.0 1.5 3.2E-05 51.4 9.5 129 48-216 39-191 (524)
128 PRK08560 tyrosyl-tRNA syntheta 89.4 0.32 6.9E-06 56.8 3.8 57 596-657 167-228 (329)
129 KOG1147 Glutamyl-tRNA syntheta 89.3 0.92 2E-05 54.2 7.4 98 43-179 201-298 (712)
130 cd00808 GluRS_core catalytic c 88.6 0.93 2E-05 50.3 6.6 75 597-675 118-193 (239)
131 PRK12284 tryptophanyl-tRNA syn 88.6 0.38 8.3E-06 57.3 3.7 60 596-655 147-213 (431)
132 cd00671 ArgRS_core catalytic c 87.2 1 2.2E-05 49.2 5.8 50 600-650 162-212 (212)
133 COG0162 TyrS Tyrosyl-tRNA synt 87.1 0.48 1E-05 56.3 3.4 53 598-654 181-234 (401)
134 PRK12282 tryptophanyl-tRNA syn 86.4 0.52 1.1E-05 55.0 3.1 79 578-657 124-209 (333)
135 PRK12285 tryptophanyl-tRNA syn 85.0 0.54 1.2E-05 55.5 2.4 61 596-657 202-265 (368)
136 COG0180 TrpS Tryptophanyl-tRNA 84.6 0.76 1.6E-05 52.7 3.3 59 596-654 144-209 (314)
137 PTZ00126 tyrosyl-tRNA syntheta 84.4 0.91 2E-05 53.9 4.0 71 595-673 208-282 (383)
138 KOG1195 Arginyl-tRNA synthetas 84.2 11 0.00025 45.3 12.6 154 652-815 403-560 (567)
139 cd00806 TrpRS_core catalytic c 83.9 0.96 2.1E-05 51.6 3.8 70 596-672 136-215 (280)
140 PRK01406 gltX glutamyl-tRNA sy 83.4 3.9 8.5E-05 50.2 9.0 72 599-674 209-281 (476)
141 PRK14895 gltX glutamyl-tRNA sy 82.7 3.9 8.4E-05 50.2 8.4 89 597-689 196-285 (513)
142 PRK12283 tryptophanyl-tRNA syn 82.2 1 2.3E-05 53.2 3.2 36 633-673 253-288 (398)
143 PLN02734 glycyl-tRNA synthetas 79.6 3.8 8.2E-05 51.8 7.0 61 930-990 450-520 (684)
144 PRK12285 tryptophanyl-tRNA syn 79.1 6.7 0.00014 46.5 8.6 104 21-156 40-149 (368)
145 PRK12410 glutamylglutaminyl-tR 77.4 6.8 0.00015 47.3 8.0 74 599-675 192-266 (433)
146 PLN02486 aminoacyl-tRNA ligase 75.5 2.3 5E-05 50.5 3.4 67 599-673 221-290 (383)
147 cd00806 TrpRS_core catalytic c 74.3 8.9 0.00019 43.8 7.6 70 50-149 7-76 (280)
148 PRK00927 tryptophanyl-tRNA syn 72.8 2.2 4.8E-05 49.9 2.3 72 596-673 137-220 (333)
149 cd00807 GlnRS_core catalytic c 72.1 8.9 0.00019 42.5 6.6 61 633-695 154-230 (238)
150 KOG1195 Arginyl-tRNA synthetas 69.6 54 0.0012 39.8 12.6 68 16-85 88-155 (567)
151 PF05746 DALR_1: DALR anticodo 68.6 76 0.0017 30.7 11.9 79 735-816 32-113 (119)
152 PLN02486 aminoacyl-tRNA ligase 67.3 19 0.00041 43.0 8.4 89 38-157 70-159 (383)
153 KOG2298 Glycyl-tRNA synthetase 63.3 11 0.00024 44.9 5.3 61 930-990 384-448 (599)
154 PTZ00348 tyrosyl-tRNA syntheta 62.7 6.2 0.00013 50.2 3.5 58 596-657 174-236 (682)
155 PRK12558 glutamyl-tRNA synthet 58.8 20 0.00044 43.5 6.7 59 630-689 226-285 (445)
156 COG0008 GlnS Glutamyl- and glu 55.4 31 0.00067 42.3 7.6 44 629-673 235-279 (472)
157 PLN03233 putative glutamate-tR 53.7 27 0.00058 43.2 6.7 67 633-700 235-317 (523)
158 cd09287 GluRS_non_core catalyt 51.5 43 0.00093 37.4 7.3 67 630-698 153-235 (240)
159 PRK08560 tyrosyl-tRNA syntheta 48.6 18 0.00039 42.3 4.1 41 40-85 29-69 (329)
160 cd00805 TyrRS_core catalytic c 48.0 14 0.00031 41.9 3.0 33 51-87 9-42 (269)
161 PTZ00402 glutamyl-tRNA synthet 47.8 51 0.0011 41.5 7.8 66 630-697 275-356 (601)
162 cd00395 Tyr_Trp_RS_core cataly 47.1 17 0.00036 41.5 3.3 31 51-85 8-39 (273)
163 TIGR00440 glnS glutaminyl-tRNA 44.9 40 0.00087 41.8 6.3 57 638-695 235-307 (522)
164 PLN02627 glutamyl-tRNA synthet 43.9 68 0.0015 39.9 8.0 73 599-675 251-324 (535)
165 PRK05347 glutaminyl-tRNA synth 42.8 48 0.001 41.3 6.6 60 638-698 264-339 (554)
166 TIGR00234 tyrS tyrosyl-tRNA sy 39.8 25 0.00053 42.0 3.4 45 41-91 30-75 (377)
167 KOG2145 Cytoplasmic tryptophan 38.2 18 0.00039 40.6 1.7 30 35-64 79-108 (397)
168 KOG2623 Tyrosyl-tRNA synthetas 37.8 35 0.00075 40.1 4.0 57 595-656 225-285 (467)
169 smart00836 DALR_1 DALR anticod 34.0 4.1E+02 0.0089 25.7 10.6 79 736-817 36-117 (122)
170 PTZ00427 isoleucine-tRNA ligas 33.5 3.6E+02 0.0077 37.4 13.0 117 1017-1162 951-1069(1205)
171 TIGR00463 gltX_arch glutamyl-t 32.8 65 0.0014 40.4 5.5 69 629-698 314-398 (560)
172 PRK12284 tryptophanyl-tRNA syn 32.7 36 0.00078 41.1 3.2 101 44-176 5-108 (431)
173 TIGR00389 glyS_dimeric glycyl- 32.4 47 0.001 41.5 4.3 58 928-990 349-406 (551)
174 PRK05710 glutamyl-Q tRNA(Asp) 31.9 65 0.0014 37.2 5.0 41 630-674 222-262 (299)
175 PLN02517 phosphatidylcholine-s 31.8 35 0.00076 42.6 3.0 72 417-492 159-232 (642)
176 PLN02859 glutamine-tRNA ligase 31.1 66 0.0014 41.7 5.3 59 631-691 487-562 (788)
177 PTZ00437 glutaminyl-tRNA synth 30.5 47 0.001 41.4 3.8 62 638-700 280-357 (574)
178 COG4019 Uncharacterized protei 30.3 5.2E+02 0.011 25.8 9.9 100 887-1034 38-150 (156)
179 PRK00927 tryptophanyl-tRNA syn 29.8 39 0.00086 39.6 2.9 32 50-85 9-40 (333)
180 TIGR00233 trpS tryptophanyl-tR 29.6 39 0.00084 39.6 2.8 41 42-87 3-43 (328)
181 PF00579 tRNA-synt_1b: tRNA sy 29.2 41 0.0009 38.5 2.9 44 39-87 3-46 (292)
182 PTZ00419 valyl-tRNA synthetase 28.7 1.4E+02 0.003 40.5 8.1 60 1017-1079 827-887 (995)
183 COG0180 TrpS Tryptophanyl-tRNA 28.5 1.2E+02 0.0026 35.2 6.3 47 41-92 5-51 (314)
184 KOG4426 Arginyl-tRNA synthetas 28.0 3.7E+02 0.008 32.3 10.0 142 630-780 433-610 (656)
185 PLN02886 aminoacyl-tRNA ligase 27.5 43 0.00092 40.0 2.6 42 44-91 49-90 (389)
186 PRK05912 tyrosyl-tRNA syntheta 27.5 51 0.0011 39.8 3.4 41 40-85 32-73 (408)
187 TIGR03838 queuosine_YadB gluta 27.4 46 0.00099 37.9 2.8 22 630-651 215-236 (272)
188 PF00749 tRNA-synt_1c: tRNA sy 27.2 1.1E+02 0.0024 35.6 5.9 72 598-673 200-274 (314)
189 PRK12283 tryptophanyl-tRNA syn 27.0 47 0.001 39.7 2.9 35 51-91 11-46 (398)
190 PRK12556 tryptophanyl-tRNA syn 26.8 54 0.0012 38.5 3.3 38 44-84 6-43 (332)
191 TIGR00422 valS valyl-tRNA synt 26.5 1.4E+02 0.003 39.8 7.5 60 1017-1079 719-779 (861)
192 PLN02886 aminoacyl-tRNA ligase 26.5 61 0.0013 38.8 3.7 14 596-609 183-196 (389)
193 PTZ00126 tyrosyl-tRNA syntheta 26.0 47 0.001 39.7 2.7 42 39-85 64-106 (383)
194 PRK05729 valS valyl-tRNA synth 24.4 2E+02 0.0043 38.5 8.3 60 1017-1079 713-773 (874)
195 PLN02907 glutamate-tRNA ligase 22.9 2.2E+02 0.0047 37.1 7.9 67 630-698 435-517 (722)
196 PRK14703 glutaminyl-tRNA synth 20.2 2.7E+02 0.0057 36.6 7.8 71 630-702 260-346 (771)
197 PRK06039 ileS isoleucyl-tRNA s 20.2 2.3E+02 0.0051 38.3 7.7 61 1017-1080 793-854 (975)
No 1
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-279 Score=2330.91 Aligned_cols=1061 Identities=63% Similarity=1.080 Sum_probs=1021.5
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCcc
Q 000999 1 MEEVSEGKDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHV 80 (1193)
Q Consensus 1 ~~~~~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V 80 (1193)
|.++++ ++||++.|++++++|.+++.|+.+++.++++|+|+||||||||||.||+||+++.||||++.||..|+||+|
T Consensus 1 m~~~~~--n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hV 78 (1070)
T KOG0434|consen 1 MSEVPE--NFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHV 78 (1070)
T ss_pred CCcccc--cCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccce
Confidence 667777 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHH
Q 000999 81 TRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESV 160 (1193)
Q Consensus 81 ~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v 160 (1193)
.++|||||||||||.+++|+|||++++|+.+|||++||++||.+|++|+.+|++++.|||+||||+|.|+||+|.|||+|
T Consensus 79 eRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESv 158 (1070)
T KOG0434|consen 79 ERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESV 158 (1070)
T ss_pred eeecccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEE
Q 000999 161 WWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCV 240 (1193)
Q Consensus 161 ~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V 240 (1193)
||+|++||+|||||||.++||||+.|.|+|||+|+.|+||+++||+++|.||+.++++ ..|++|||||||||||+|+||
T Consensus 159 WwvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~~~-~slvAWTTTPWTLPSNlal~V 237 (1070)
T KOG0434|consen 159 WWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDPN-VSLVAWTTTPWTLPSNLALCV 237 (1070)
T ss_pred HHHHHHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeEEEEeeccCCcc-eeEEEEecCCccCccceeEEE
Confidence 9999999999999999999999999999999999999999999999999999999987 999999999999999999999
Q ss_pred ccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeee
Q 000999 241 NANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGE 320 (1193)
Q Consensus 241 ~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 320 (1193)
||++.||+++++.+|..||++++|++.+++ +| + .++|+|+ +
T Consensus 238 np~~~Yvki~dk~~~k~yil~esrl~~l~k-~~-----------------~--------------------~~~~eil-e 278 (1070)
T KOG0434|consen 238 NPDFQYVKIKDKTTGKKYILMESRLGELYK-NP-----------------K--------------------NDNYEIL-E 278 (1070)
T ss_pred cCCeEEEEEEeccCCeEEEEeHHHHHHHhc-Cc-----------------c--------------------cccHHHH-H
Confidence 999999999999999999999999999988 22 1 1239999 9
Q ss_pred eeecccccccccccCcccccc-cCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCc
Q 000999 321 VFSGAYLVGKKYEPLFDYFKE-FSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGC 399 (1193)
Q Consensus 321 ~~~G~~L~G~~y~Pl~~~~~~-~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~ 399 (1193)
+|+|++|+|++|+|||+||.. +...+++|++++||+.++||||||||||||++||++|..+|+|.++..++||||++|+
T Consensus 279 r~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~ 358 (1070)
T KOG0434|consen 279 RFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGL 358 (1070)
T ss_pred hcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCc
Confidence 999999999999999999944 6788999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCcccc
Q 000999 400 FTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVP 479 (1193)
Q Consensus 400 ~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P 479 (1193)
||.++++|+|.+||||++.||+.|++.|.|++..++.|||||||||+|||+||++|+||++++.+.++|+++|.+++|+|
T Consensus 359 ~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~t~WVP 438 (1070)
T KOG0434|consen 359 FTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMKTHWVP 438 (1070)
T ss_pred cccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcc
Q 000999 480 DYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFG 559 (1193)
Q Consensus 480 ~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~ 559 (1193)
..++++||+|||+|+|||+|||+||||||||+|+++|.++++|+||++||++|+|.+++|+||++||+++||+.+|+ |
T Consensus 439 ~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gk--g 516 (1070)
T KOG0434|consen 439 QNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESIDHITIPSKKGK--G 516 (1070)
T ss_pred hhhhHHHHHHHHhhhhhcccccccccCCCcceEEccCCceEEEeccHHHHHHhcCCcchhhhhhhcCceecccCCCC--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988 8
Q ss_pred cccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEc
Q 000999 560 LLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLA 639 (1193)
Q Consensus 560 ~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld 639 (1193)
.++|+++||||||+||+|||||.||||+|++.|+..|||||+.||.||+|||||+|+++|+++|+++|||||+|||+||+
T Consensus 517 ~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLA 596 (1070)
T KOG0434|consen 517 VLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLA 596 (1070)
T ss_pred ceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCchHhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcC
Q 000999 640 EDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGG 719 (1193)
Q Consensus 640 ~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~ 719 (1193)
+||+|||||+.|++||..+|++|||||||+||++||+++++.++|+++++++++++++.+|||+|+|+.+++..+....+
T Consensus 597 eDG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g 676 (1070)
T KOG0434|consen 597 EDGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETG 676 (1070)
T ss_pred cccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred CCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHH
Q 000999 720 APFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIA 799 (1193)
Q Consensus 720 ~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a 799 (1193)
..|.++... .+.+.+||||++..++++..+++.|++|++++++..+..|+++|+|||||++|+|++++++..++..|
T Consensus 677 ~~f~~~~~~---~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~A 753 (1070)
T KOG0434|consen 677 KDFVFDDSV---TSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRRRLKGENGEHDCHNA 753 (1070)
T ss_pred Ccccccccc---ccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhhheehhhhhhcCCCchHHHHHH
Confidence 778776554 36789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCC-----CCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHH
Q 000999 800 LSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGS-----GSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNI 873 (1193)
Q Consensus 800 ~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~-----~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~ 873 (1193)
+++|+++|.+++++|+||+||+||.|||+|+...+ .+.+|||++++|.++++ +|+.+|..+++||.||+++|++
T Consensus 754 L~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~siIdl~R~i 833 (1070)
T KOG0434|consen 754 LNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELIDETVERRVERMQSIIDLARNI 833 (1070)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccccCCccceeEEeecCCchhhhccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987654 46689999999999999 9999999999999999999999
Q ss_pred HHHcCCCCCCCcceeEEeCCChhhHHHHHhHHHHHHHHhhcCcceeecCCcceE-EEEeeccChHHHhhHHhhhHHHHHH
Q 000999 874 RERHNKPLKSPLREMIVVHPDADFLDDIAGKLKEYVLEELNVRSLVPCNDTLKY-ASLRAEPDFSVLGKRLGRSMGVVAK 952 (1193)
Q Consensus 874 R~~~~i~~k~pl~~~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~~~~~~~-~~~~~~~d~~~lg~rl~k~~~~v~~ 952 (1193)
|++.+|++|+||+.++|+++|++++++++. |++||.+||||++|.++++..+| +.++++|||.+||+||+|.|+++++
T Consensus 834 Rern~islKtPLK~~ivi~~d~~~ledik~-l~~yI~eElNVr~v~~~~d~~kyg~~lkaepd~~vLGkklk~~~kkv~~ 912 (1070)
T KOG0434|consen 834 RERNTISLKTPLKELIVIHSDEEYLEDIKS-LERYILEELNVREVVFTSDEEKYGVVLKAEPDFPVLGKKLKKDMKKVKK 912 (1070)
T ss_pred hhccCCcccCchhheEEEcCCHHHHHHHHH-HHHHHHHhhcceeeeecccchhcceEEEecCCcHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999998 99999999999999999999999 9999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHhCCcEEEceEEeeCCcEEEEEEecCCCCCcccceeeccCCCEEEEEecCCCHHHHHhhhhHHHHHH
Q 000999 953 EVKAMSQEDILAFEKSGEVTIATHCLQLADIKVVREFKRPDGVTEKEIDAAGDGDVLVILDLRPDESLFEAGVAREVVNR 1032 (1193)
Q Consensus 953 ~l~~~~~~~~~~~~~~g~~~~~g~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~V~lD~~l~~eL~~eGlaREvi~r 1032 (1193)
+|++++++|+.+|+++|+++++|++|..+|+.|.+....+ ..++++.+++|++++|+||+++|++|.+||+|||+|||
T Consensus 913 ~l~~~t~ee~~~f~~~g~l~v~g~el~~~D~~i~~~~~~~--~~~~~~~s~~d~~~lvilD~~~d~~lv~eglaREv~nr 990 (1070)
T KOG0434|consen 913 ALKQVTSEEVEEFLKSGKLVVDGHELVEGDLQIIRAVRFD--VGGAGLKSHTDGDVLVILDTTIDESLVEEGLAREVINR 990 (1070)
T ss_pred HHhhcCHHHHHHHHhcCCEEEeceeechhhHHHHHhhhhh--hcccccccccCCcEEEEEecCccHHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999998888644 24578899999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCceEEEEEEeCCcChHHHHHHHHHHHHHHHHhhcCCCcCCCCCCCCcceecceeeeeecCeEEEEEEe
Q 000999 1033 IQKLRKKIALEPTDVVEVYFESLDEDKSVSQQVLNSQEHYIRDAIGSPLLPSSTLPSHAVIIGEESFDGISNLSFKISLT 1112 (1193)
Q Consensus 1033 IQ~lRK~~~L~v~D~I~v~~~~~~~~~~~l~~~i~~~~~~I~~~l~~~~~~~~~~~~~~~~~~~~e~~~i~~~~~~i~i~ 1112 (1193)
||+|||++||.++|.|.|+|....+ ...+..++.+|.+.|.+++++++. .+..+++.+++..++ ++++|..+.|++.
T Consensus 991 iQkLRKk~~L~~tDdv~v~~~~~~d-~~~l~~vv~s~~~~i~~s~~~~~~-~~~~~~~~~~i~~ee-~~~k~t~~~lsl~ 1067 (1070)
T KOG0434|consen 991 IQKLRKKSGLEVTDDVRVYYKLKND-TIDLESVVDSHEDLISKSLGSPIL-KSTGASEKAIIADEE-QDIKGTEFELSLF 1067 (1070)
T ss_pred HHHHHHhcCCcccceEEEEEEecCC-cccHHHHHHHHHHHHHHHhCCCcc-CCCCccccccccccc-cccCCceEEEEee
Confidence 9999999999999999999997664 347999999999999999999954 444555666777778 9999999999998
Q ss_pred ec
Q 000999 1113 RP 1114 (1193)
Q Consensus 1113 ~~ 1114 (1193)
|.
T Consensus 1068 r~ 1069 (1070)
T KOG0434|consen 1068 RL 1069 (1070)
T ss_pred cc
Confidence 75
No 2
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.3e-257 Score=2445.57 Aligned_cols=1155 Identities=80% Similarity=1.318 Sum_probs=1061.5
Q ss_pred CCCCCCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCcccee
Q 000999 4 VSEGKDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRR 83 (1193)
Q Consensus 4 ~~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~ 83 (1193)
+++++.|||+++|++|+++|+++++|+++.+.++++|+|+|++|||||||.||+||++|+|++|+++||+||+||+|+|+
T Consensus 2 ~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~ 81 (1159)
T PLN02882 2 VCEGKDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRR 81 (1159)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCccccc
Confidence 56778999999999999999999999998776778999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHH
Q 000999 84 FGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWV 163 (1193)
Q Consensus 84 ~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~ 163 (1193)
+||||||||||.+++|++|++++++++++|+++|+++||+++++|.+.|+++++|||+|+||+++|+||||.|+++|||+
T Consensus 82 ~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~ 161 (1159)
T PLN02882 82 FGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWV 161 (1159)
T ss_pred CccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHH
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccC
Q 000999 164 FAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNAN 243 (1193)
Q Consensus 164 f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~ 243 (1193)
|++|+++||||||.++|+|||+|+|+|||||++++|+++++|++||+||+.++.++.+|+||||||||||||+||||||+
T Consensus 162 f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~ 241 (1159)
T PLN02882 162 FKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPN 241 (1159)
T ss_pred HHHHHHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCC
Confidence 99999999999999999999999999999999999999999999999999875434799999999999999999999999
Q ss_pred ccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeee
Q 000999 244 FTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFS 323 (1193)
Q Consensus 244 ~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~ 323 (1193)
++|++++...+|+.||||++|++++++... . +.+ |... +....+|+++ ++++
T Consensus 242 ~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~-------------~---~~~---~~~~--------~~~~~~~~v~-~~~~ 293 (1159)
T PLN02882 242 FTYVKVRNKYTGKVYIVAESRLSALPTAKP-------------K---SKK---GSKP--------ENAAEGYEVL-AKVP 293 (1159)
T ss_pred CcEEEEEecCCCeEEEEhHHHHHHHHhhhh-------------c---ccc---cccc--------cccccccEEE-EEec
Confidence 999999875468999999999999875200 0 000 0000 0001249999 9999
Q ss_pred cccccccccccCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccC
Q 000999 324 GAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGK 403 (1193)
Q Consensus 324 G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~ 403 (1193)
|++|+|++|.|+|+|+....++++|||+++||++++|||+||+|||||++||++|++|||+.+..++++|||++|+|+++
T Consensus 294 G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~ 373 (1159)
T PLN02882 294 GSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEK 373 (1159)
T ss_pred chhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccC
Confidence 99999999999998875434578999999999999999999999999999999999999977766799999999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhh
Q 000999 404 ITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVK 483 (1193)
Q Consensus 404 ~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~ 483 (1193)
+|+|+|++|+|||+.|+++|+++|+|++.+++.|+||||||||+||||++++||||+++++|+++++++++++|+|++++
T Consensus 374 ~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~~~i~w~P~~~~ 453 (1159)
T PLN02882 374 VTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDYVK 453 (1159)
T ss_pred CcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhhCCcEEECCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccc
Q 000999 484 EKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRR 563 (1193)
Q Consensus 484 ~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r 563 (1193)
++||.+||+|++|||||||||||||||+|+|++|+++++++|++++.+++|...+|+||++||++++||++|++.+.|+|
T Consensus 454 ~~r~~~wl~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r 533 (1159)
T PLN02882 454 EKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRR 533 (1159)
T ss_pred hhHHHHHHhcCcccceeeccccCCccceEEeCCCCeEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhceEe
Confidence 89999999999999999999999999999999999999999999999999988899999999999999876542247999
Q ss_pred cccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCc
Q 000999 564 IEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGK 643 (1193)
Q Consensus 564 ~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~ 643 (1193)
++||||||||||+|||+++||||+|++.|+++||+|++++|+||+|||||+|+++|+++++++||++|++||||+|++|+
T Consensus 534 ~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~ 613 (1159)
T PLN02882 534 VDDVFDCWFESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGK 613 (1159)
T ss_pred cCceeeeeeccCccHHHHcCCcccChhHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 000999 644 KMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFI 723 (1193)
Q Consensus 644 KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~ 723 (1193)
|||||+||+|+|.++|++||||+|||||+++++.+++|++|+++++.+.+++++++|||+++|+.+++..+.....+++.
T Consensus 614 KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~ 693 (1159)
T PLN02882 614 KMSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFV 693 (1159)
T ss_pred CcccCCCCCCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCC
Confidence 99999999999999999999999999999877656789999999999888899999999999999988765443334565
Q ss_pred CchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHH
Q 000999 724 PLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTL 803 (1193)
Q Consensus 724 p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL 803 (1193)
|.....+....+.+|+||+++++++++.++++|++|+|++|++.|++|++++|||||+++|+|++++.+.+++++++++|
T Consensus 694 p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL 773 (1159)
T PLN02882 694 PLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTL 773 (1159)
T ss_pred ccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHH
Confidence 53211000124678999999999999999999999999999999999998799999999999999876667788999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 000999 804 YNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNIRERHNKPLK 882 (1193)
Q Consensus 804 ~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~R~~~~i~~k 882 (1193)
+++|+.+++||||||||+||+||++|+...+...+|||+++||++++. +|+++|+.|+.++++++++|++|++.++++|
T Consensus 774 ~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~~~~~~SVh~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~~~~~~~~ 853 (1159)
T PLN02882 774 YNVLLTSCKVMAPFTPFFTEVLYQNLRKVLPGSEESIHYCSFPQVDEGELDERIEQSVSRMQTVIELARNIRERHNKPLK 853 (1159)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHhccccCCCCCceeecCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999997532223579999999999877 8999999999999999999999999999999
Q ss_pred CCcceeEEeCCChhhHHHH-HhHHHHHHHHhhcCcceeecCCcceEEEEeeccChHHHhhHHhhhHHHHHHHHHhcCHHH
Q 000999 883 SPLREMIVVHPDADFLDDI-AGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMGVVAKEVKAMSQED 961 (1193)
Q Consensus 883 ~pl~~~vv~~~~~~~~~~l-~~~l~~~i~~elNv~~v~~~~~~~~~~~~~~~~d~~~lg~rl~k~~~~v~~~l~~~~~~~ 961 (1193)
+||+.+++++.+++.++++ .. ++++|++++||++|++.++...|+.++++|||++|||||||+|++|+++|+++++++
T Consensus 854 ~pl~~~~~~~~~~~~~~~~~~~-~~~~i~~e~nv~~v~~~~~~~~~~~~~~~pn~~~lG~~~~~~~~~v~~~i~~~~~~~ 932 (1159)
T PLN02882 854 TPLKEMVVVHPDAEFLDDITGK-LKEYVLEELNVRSLVPCNDPLKYASLRAEPNFSVLGKRLGKSMGLVAKEVKAMSQDD 932 (1159)
T ss_pred CccceeeEecCCHHHHHHHHHH-HHHHHHHhhCcceEEEeecccceEEEEEeeCchHhchhhhhhHHHHHHHHHhCCHHH
Confidence 9999988887777777677 45 999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEceEEeeCCcEEEEEEecCCCCCcccceeeccCCCEEEEEecCCCHHHHHhhhhHHHHHHHHHHHhhCC
Q 000999 962 ILAFEKSGEVTIATHCLQLADIKVVREFKRPDGVTEKEIDAAGDGDVLVILDLRPDESLFEAGVAREVVNRIQKLRKKIA 1041 (1193)
Q Consensus 962 ~~~~~~~g~~~~~g~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~V~lD~~l~~eL~~eGlaREvi~rIQ~lRK~~~ 1041 (1193)
+.+++++|+++++|++|+.+||.|.+.+..+++...++++++++++++|+||+++|+||++||+|||||||||+|||++|
T Consensus 933 i~~~~~~g~~~i~g~~L~~~dv~v~~~~~~~~~~~~~~~~~~~~~~~~V~lD~~~~~eL~~eG~ARE~v~rIQ~lRK~~g 1012 (1159)
T PLN02882 933 ILEFEKAGEVTIAGHTLKAGDIKVVRDFKRPEGVSKEDIDAAGDGDVLVILDLRVDESLLEAGVAREVVNRIQKLRKKAG 1012 (1159)
T ss_pred HHHHHhCCcEEECCEEeecceEEEEEeccccccccccceeeecCCCEEEEEECCCCHHHHHhhHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999876554455678988899999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEeCCc-ChHHHHHHHHHHHHHHHHhhcCCCcCCCCCCCCcceecceeeeeecCeEEEEEEeecccccCh
Q 000999 1042 LEPTDVVEVYFESLDE-DKSVSQQVLNSQEHYIRDAIGSPLLPSSTLPSHAVIIGEESFDGISNLSFKISLTRPALVFNS 1120 (1193)
Q Consensus 1042 L~v~D~I~v~~~~~~~-~~~~l~~~i~~~~~~I~~~l~~~~~~~~~~~~~~~~~~~~e~~~i~~~~~~i~i~~~~~~~~~ 1120 (1193)
|+++|+|.|+|.+.++ +..++.+++++|.+||+++++.++.+.+..|++++++.+|++..++|.+|.|.|+|++++|++
T Consensus 1013 l~~~D~I~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~i~~~~~~~~~~~ 1092 (1159)
T PLN02882 1013 LEPTDKVEVFFESLDEVDESALSQVLKSQAQYIRESLGSPLLPSSMMPSHAVVIAEESFHGVSGLSFKISLARPALAFNE 1092 (1159)
T ss_pred CCCCcEEEEEEEecCCcchHHHHHHHHHHHHHHHHHHCCCCcccccCCCcCceeeeeeeccccCcEEEEEEEecccccCc
Confidence 9999999999975431 222699999999999999999999988887888888877765799999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHhhccccccchhhhcCCceEEEEeccCCCceEeecCceEEEeccchhhc
Q 000999 1121 DSILALYSGNTMFLQGLQMYLLSRDHSNLKSEFQLGNGKIMVDCIENQPPVNLVLGEHVFLSVGDYYVR 1189 (1193)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 1189 (1193)
++++++|+|+++++++|++||+||++++|++||++|+++ |+|+.++++++|++|+||||++++++++
T Consensus 1093 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1159 (1159)
T PLN02882 1093 DALLALCSGDEELAEGVEAVLLSRDHSNLKSEFQAGKIK--LSCRENGPEVDVVLGKHFHLSVSDSVLS 1159 (1159)
T ss_pred hHHHHhccCchhhhhhhhhhhcccchhhhhhhhccCCce--EEeecCCcceEEEeccEEEEechhhhcC
Confidence 999999999999999999999999999999999999864 5556899999999999999999999864
No 3
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=4e-237 Score=2243.65 Aligned_cols=1061 Identities=47% Similarity=0.880 Sum_probs=958.1
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccce
Q 000999 3 EVSEGKDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTR 82 (1193)
Q Consensus 3 ~~~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~ 82 (1193)
.++. +|||+++|++|+++|+++++|+++.+.++++|+|+|++|||||||.||+|||+++|++|+++||+||+||+|+|
T Consensus 67 ~~~~--~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~ 144 (1205)
T PTZ00427 67 GVSE--NPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVER 144 (1205)
T ss_pred CCCC--CCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeecc
Confidence 3444 89999999999999999999999876567788999999999999999999999999999999999999999999
Q ss_pred ecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHH
Q 000999 83 RFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWW 162 (1193)
Q Consensus 83 ~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~ 162 (1193)
++||||||||||.+++|++|++.+++++++|+++|+++|++++++|.+.|+++++|||+|+||+++|+||||.|+++|||
T Consensus 145 ~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~ 224 (1205)
T PTZ00427 145 KFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWW 224 (1205)
T ss_pred CCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCC--------------------------
Q 000999 163 VFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGD-------------------------- 216 (1193)
Q Consensus 163 ~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~-------------------------- 216 (1193)
+|++||+|||||||.++|||||+|+|+||++||+++|+++.||++||+||+.+.
T Consensus 225 ~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~ 304 (1205)
T PTZ00427 225 VFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYN 304 (1205)
T ss_pred HHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeeccc
Confidence 999999999999999999999999999999999999999999999999998752
Q ss_pred -------------------CCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCC
Q 000999 217 -------------------PEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSA 277 (1193)
Q Consensus 217 -------------------~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 277 (1193)
.++.+|+||||||||||||+||||||+++|+.++...+++.||+|++|++.++++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~----- 379 (1205)
T PTZ00427 305 NKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKEL----- 379 (1205)
T ss_pred cccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhh-----
Confidence 01268999999999999999999999999999987556799999999999987620
Q ss_pred CCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccc---cCCceEEEEecCc
Q 000999 278 ANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKE---FSDVAFRVIADNY 354 (1193)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~---~~~~~~~vi~~~~ 354 (1193)
+. ...+|+++ ++++|++|+|++|.|+|+++.. +.++.+|||+++|
T Consensus 380 -------------~~------------------~~~~~~v~-~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~ 427 (1205)
T PTZ00427 380 -------------KW------------------NVEDLKIV-NRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDF 427 (1205)
T ss_pred -------------cc------------------cccccEEE-EEeechhhCCCeeeCCccccccccccCCceeEEEccCc
Confidence 00 01239999 9999999999999999987632 2367999999999
Q ss_pred cccCCCCCceeecCCCChhhHHHHHHcCCCcc-CCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeec
Q 000999 355 VTSDSGTGIVHCAPAFGEDDYRVCIENQIINK-GENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTG 433 (1193)
Q Consensus 355 V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~-~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~ 433 (1193)
|++++||||||+|||||++||++|++|||+.. ..+++||||++|+|++++|+|+|++|+|||+.|+++|+++|+|++.+
T Consensus 428 V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e 507 (1205)
T PTZ00427 428 VTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNN 507 (1205)
T ss_pred cCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCCCCHHHhHHHHHHHHHhCCCeeeee
Confidence 99999999999999999999999999999421 22378999999999999999999999999999999999999999999
Q ss_pred cccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEE
Q 000999 434 SLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWT 513 (1193)
Q Consensus 434 ~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~ 513 (1193)
++.|+||||||||+||||++++||||+++++++++++++++++|+|++++++||.+||+|++|||||||||||||||+|+
T Consensus 508 ~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~ 587 (1205)
T PTZ00427 508 TIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWA 587 (1205)
T ss_pred eeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEE
Confidence 99999999999999999999999999999999999999999999999987899999999999999999999999999999
Q ss_pred cCCCCEEEEecChHHHHHhhCC-cccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCC-Chhh
Q 000999 514 SEDGEEIIVVDSVDKLEKLSGE-KIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFE-NAEH 591 (1193)
Q Consensus 514 ~~~~~~~~~v~s~~el~~l~g~-~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~-~~~~ 591 (1193)
|++|+++++++|+++|.+++|. .+.|+|++++|.++++|++|..++.|+|++||||||||||+|||+++|||++ +++.
T Consensus 588 ~~~~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~ 667 (1205)
T PTZ00427 588 DEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKED 667 (1205)
T ss_pred cCCCCeEeccCCHHHHHHHhccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhh
Confidence 9999999999999999999885 3678999999999988876653357999999999999999999999999997 5788
Q ss_pred hhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhH
Q 000999 592 FENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYL 671 (1193)
Q Consensus 592 f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL 671 (1193)
|+++||+|++++|+||+|||||+|+++|++++|++|||+|++||||+|++|+|||||+||||||.++|++||||+|||||
T Consensus 668 f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~L 747 (1205)
T PTZ00427 668 FHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYL 747 (1205)
T ss_pred HhccCCceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHH
Q 000999 672 INSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHF 751 (1193)
Q Consensus 672 ~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~ 751 (1193)
++++...++|++|+++.+.+..+++++++||+++|+.+++..+....+.+|.+.+... ....+.+|+||+++++++++.
T Consensus 748 ls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~-~~~~~~~DrWILs~l~~li~~ 826 (1205)
T PTZ00427 748 INSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYI-YKNDNIMDQWIFSSVQSLTKS 826 (1205)
T ss_pred HhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccc-cccCCHHHHHHHHHHHHHHHH
Confidence 9876656789999999998888999999999999999866533211111232221100 123467899999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhc
Q 000999 752 VRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRK 831 (1193)
Q Consensus 752 v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~ 831 (1193)
|+++|++|+|++|+++|++|++++|||||+++|+|+|++.+.+++.+++++|+++|+.+++||||||||+||+|||+|+.
T Consensus 827 v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 827 VHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGEENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCCcHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhh
Confidence 99999999999999999999988999999999999998655566788999999999999999999999999999999964
Q ss_pred cCC---------------------CCCCCeeeccCCCCcCC--ccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccee
Q 000999 832 VGS---------------------GSEESIHFCSFPKEEGK--RDERIEQSVLRMMTIIDLARNIRERHNKPLKSPLREM 888 (1193)
Q Consensus 832 ~~~---------------------~~~~SVh~~~~P~~~~~--~D~~le~~~~~~~~vi~~~R~~R~~~~i~~k~pl~~~ 888 (1193)
... ...+|||+++||++++. +|+++++.|+.++++++++|++|++.++++|+||+.+
T Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~e~~~~~~~~ii~~~R~~R~~~~i~~r~pl~~~ 986 (1205)
T PTZ00427 907 VKSTNEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEIIELIEKMKDVILLGRVLRERRKVASKKPLKSI 986 (1205)
T ss_pred ccccccccccccccccccccccccCCCCeeEeeCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccee
Confidence 210 01369999999998876 5999999999999999999999999999999999998
Q ss_pred EEeCCChhhHHHHHhHHHHHHHHhhcCcceeecCCcceEEEEeeccChHHHhhHHhhhHHHHHHHHHhcCHHHHHHHHhC
Q 000999 889 IVVHPDADFLDDIAGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMGVVAKEVKAMSQEDILAFEKS 968 (1193)
Q Consensus 889 vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~~~~~~~~~~~~~~d~~~lg~rl~k~~~~v~~~l~~~~~~~~~~~~~~ 968 (1193)
+|.+.+++.++.++. +.++|++++||++|++.++.. ++.++++||+++||+||||++++|+++|++++++++..++++
T Consensus 987 ~v~~~~~~~~~~~~~-~~~~i~~e~nv~~v~~~~~~~-~~~~~~~pn~~~lG~~~g~~~~~v~~~i~~~~~~~~~~~~~~ 1064 (1205)
T PTZ00427 987 TILHPNESYFKNFDQ-ISNYIKEELNVLNVECSNDTS-CLDFSAIPNYKTLGVKLGYNLKKVQNKIKNMDSESIKLYQQE 1064 (1205)
T ss_pred EEecCcHHHHHHHHH-HHHHHHHhhCcceEEEEecCc-eEEEEEEechhHhChhhhhhHHHHHHHHHcCCHHHHHHHHhC
Confidence 887777777778887 999999999999999987644 578999999999999999999999999999999999999999
Q ss_pred CcEEEceEEeeCCcEEEEEEecCCCCCcccceeeccCCCEEEEEecCCCHHHHHhhhhHHHHHHHHHHHhhCCCCCCceE
Q 000999 969 GEVTIATHCLQLADIKVVREFKRPDGVTEKEIDAAGDGDVLVILDLRPDESLFEAGVAREVVNRIQKLRKKIALEPTDVV 1048 (1193)
Q Consensus 969 g~~~~~g~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~V~lD~~l~~eL~~eGlaREvi~rIQ~lRK~~~L~v~D~I 1048 (1193)
|+++++|++|+.+||.|......+ .+++.++++++++|+||+++|+||++||+|||||||||+|||++||+++|+|
T Consensus 1065 g~~~~~~~~l~~~d~~v~~~~~~~----~~~~~~~~~~~~~v~ld~~~~~el~~eg~aRe~i~riQ~~RK~~~l~~~d~i 1140 (1205)
T PTZ00427 1065 GKITLDNVTLEGDDIIIQMKPNFQ----NDNTDIISNNYVTILMDFTTDQQLENMASARELCNHIQKMRKNLSLNQNSPV 1140 (1205)
T ss_pred CcEEECcEEeccccEEEEEeccCC----ccceEEecCCCEEEEEECCCCHHHHHhhHHHHHHHHHHHHHHhCCCCCCcEE
Confidence 999999999999999999875422 4678888899999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCcChHHHHHHHHHHHHHHHHhhcCCCcCCCCCC---CCcceecceeeeeecCeEEEEEEee
Q 000999 1049 EVYFESLDEDKSVSQQVLNSQEHYIRDAIGSPLLPSSTLP---SHAVIIGEESFDGISNLSFKISLTR 1113 (1193)
Q Consensus 1049 ~v~~~~~~~~~~~l~~~i~~~~~~I~~~l~~~~~~~~~~~---~~~~~~~~~e~~~i~~~~~~i~i~~ 1113 (1193)
.|++.+.++ ++.++++++.+||+++++.++...+..+ .++..+..++ +.|+|..+.|.|+.
T Consensus 1141 ~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1204 (1205)
T PTZ00427 1141 KMHVYIADD---TLRNNMVSEMEYIKKCLRRELNVIPSQEDYQNLADKMHDEE-ITLAGKPVRVVFAN 1204 (1205)
T ss_pred EEEEEcCcH---HHHHHHHHHHHHHHHHHhhhcccccccccccccccccccce-eeeCCcEEEEEEec
Confidence 999975443 7999999999999999986665443322 2222334466 89999999998763
No 4
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-218 Score=1981.47 Aligned_cols=904 Identities=40% Similarity=0.739 Sum_probs=822.7
Q ss_pred CCCchHHHHHHHHHHHhcCCccccc-ccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 9 DFSFSREEEKILEFWNSIDAFKTQL-DRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 9 ~~~~~~~E~~~~~~W~~~~~f~~~~-~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
++|++++|++|+++|+++++|++.. ++++++|.|+|+||||||||.||+|||+|+|+||+|.||++|+||+|.++||||
T Consensus 17 r~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWD 96 (933)
T COG0060 17 RANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWD 96 (933)
T ss_pred cCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCc
Confidence 7999999999999999999999999 477899999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L 167 (1193)
|||||||.+|+|++|+ ++.+++++|+++|+++||++|.+|.+.|+++|+|||+|.||+|+|.|||+.|++++||+|++|
T Consensus 97 cHGLPIE~~vek~lg~-~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~ 175 (933)
T COG0060 97 CHGLPIELKVEKKLGI-GKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKEL 175 (933)
T ss_pred CCCchHHHHHHHHhCC-CcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHH
Confidence 9999999999999999 778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCC--CCcceEEEeecCCCccCCCceEEEccCcc
Q 000999 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGD--PEKAAFVAWTTTPWTLPSNLALCVNANFT 245 (1193)
Q Consensus 168 ~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~--~~~~~l~vwTTtPwTl~~n~al~V~p~~~ 245 (1193)
++|||||||.|||+|||+|+|+||++|| +|.+++|||+||+||+.+. ..+.+|+||||||||||||+|||||||.+
T Consensus 176 ~~kGllyrg~Kpv~wsp~c~TaLAeaEv--ey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~ 253 (933)
T COG0060 176 YEKGLLYRGYKPVPWSPRCETALAEAEV--EYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLD 253 (933)
T ss_pred HHCCCeecCCeeeeecCCCCcchhhhhh--cccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcc
Confidence 9999999999999999999999999999 6777999999999999863 23499999999999999999999999999
Q ss_pred EEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecc
Q 000999 246 YVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGA 325 (1193)
Q Consensus 246 Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~ 325 (1193)
|++++.+ ++.||+|+++++.+++. . + ...|+++ ++++|+
T Consensus 254 Y~lv~~~--~~~~IlA~~lve~~~~~-~-------------------~------------------~~~~~vl-~~~kG~ 292 (933)
T COG0060 254 YVLVEVN--GEKLILAKALVESVAKK-A-------------------G------------------VEDYEVL-ETFKGS 292 (933)
T ss_pred eEEEEEC--CEEEEEhHHHHHHHHHH-c-------------------C------------------CcceEEe-EEeehh
Confidence 9999864 59999999999999762 0 0 0128899 999999
Q ss_pred cccccccccCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcC-CCccCCCcceeecCCCccccCC
Q 000999 326 YLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQ-IINKGENLIVAVDDDGCFTGKI 404 (1193)
Q Consensus 326 ~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~-l~~~~~~~~~~vd~~G~~~~~~ 404 (1193)
+|.|.+|.|||.++ ..++.+||+.++|||.+.|||+||+|||||+|||.+|+++| + +++||||++|+||+++
T Consensus 293 ~Leg~~y~hPf~~~--~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l-----~v~~pVD~~G~yt~~~ 365 (933)
T COG0060 293 ELEGLRYEHPFYDF--VYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLL-----EVLNPVDDNGRYTEEA 365 (933)
T ss_pred hhCCCEeeCCcccc--cccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCc-----CCccccCCCccccccc
Confidence 99999998888655 24689999999999999999999999999999999999999 6 9999999999999999
Q ss_pred CCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhh
Q 000999 405 TDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKE 484 (1193)
Q Consensus 405 ~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~ 484 (1193)
+.|.|++|+||++.||+.|+++|.|++.++|+|||||||||+||||||+++|||++|+++|++|++++++++|+|++. +
T Consensus 366 ~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~~-~ 444 (933)
T COG0060 366 PKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWG-K 444 (933)
T ss_pred hhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEChhH-H
Confidence 999999999999999999999999999999999999999999999999999999999999999998888999999997 7
Q ss_pred HhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHhhCCc-----ccccccCCCccccccC-CCCCCc
Q 000999 485 KRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEK-----IFDLHRHNIDHITIPS-SRGPEF 558 (1193)
Q Consensus 485 ~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~g~~-----~~dlh~~~id~~~~~~-~~g~~~ 558 (1193)
+||++||+|++||||||||+||+|||+|+|++|++++++ .+||.++.+.. +.++|++++|+++.+| .+|.
T Consensus 445 ~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~--~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~-- 520 (933)
T COG0060 445 NRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVI--TEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGK-- 520 (933)
T ss_pred HHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeecc--HHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcc--
Confidence 999999999999999999999999999999999998887 78888888764 6899999999999998 5554
Q ss_pred ccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEE
Q 000999 559 GLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVL 638 (1193)
Q Consensus 559 ~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vl 638 (1193)
.|+|++||||||||||+||+++.| |+++ ..|..++ +||+.||+||+|||||+++++|++++|++|||+|++|||+|
T Consensus 521 -~~~rv~DvlDVWFDSGs~~~a~~~-~~~~-~~~~~~~-aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvl 596 (933)
T COG0060 521 -EYRRVPDVLDVWFDSGSTPYAVLH-PREN-LKFPALF-ADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVL 596 (933)
T ss_pred -eeEecCcceEEEEcCCCCcccccC-Cccc-ccCcccc-CcEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEE
Confidence 899999999999999999999999 8865 3344444 69999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhc
Q 000999 639 AEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEG 718 (1193)
Q Consensus 639 d~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~ 718 (1193)
|++|+|||||+||+|+|.+++++||||+||||+++++. ++|++||+++++. +++.+++|||+++|++.|++
T Consensus 597 De~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~--~~dl~~s~~il~~-~~~~~r~irNt~rF~l~nl~------ 667 (933)
T COG0060 597 DEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDY--WEDLRFSDEILKQ-VREVYRKIRNTYRFLLGNLD------ 667 (933)
T ss_pred CCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCc--hhccccCHHHHHH-HHHHHHHHHHHHHHHHHhcc------
Confidence 99999999999999999999999999999999999874 8899999999655 58899999999999999965
Q ss_pred CCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCC-CChHHH
Q 000999 719 GAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGR-SGEDDC 796 (1193)
Q Consensus 719 ~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~-~~~~~~ 796 (1193)
+|+|.....+..++..+||||+++++++++.++++|++|+|+++++.|++|+ ++||+|||+++|+|+|++ .++.+|
T Consensus 668 --~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~r 745 (933)
T COG0060 668 --DFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDR 745 (933)
T ss_pred --CCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHH
Confidence 4555442222346788999999999999999999999999999999999999 999999999999999998 678899
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHHHH
Q 000999 797 RIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNIRE 875 (1193)
Q Consensus 797 ~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~R~ 875 (1193)
++|+++|+++|.+++++||||+||+||+|||+|.... ..+|||+++||+++.. +| ++.++..|.
T Consensus 746 raa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~--~~eSVhl~~~p~~~~~~~~-------------~~~~~~~r~ 810 (933)
T COG0060 746 RAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGER--KEESVHLEDWPEVDEELID-------------VEAALAARW 810 (933)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCC--CCceeEeccCCcccccccc-------------hhHHHHHHH
Confidence 9999999999999999999999999999999998642 2699999999998876 54 677888999
Q ss_pred HcCCCCCCCcceeEEeCCChhhHHHHHhHHHHHHHHhhcCcceeecCCcceEEEEeeccChHHHhhHHhhhHHHHHHHHH
Q 000999 876 RHNKPLKSPLREMIVVHPDADFLDDIAGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMGVVAKEVK 955 (1193)
Q Consensus 876 ~~~i~~k~pl~~~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~~~~~~~~~~~~~~d~~~lg~rl~k~~~~v~~~l~ 955 (1193)
+..+++|+|+..+++.. + +..+|.+++|++.+.+.++ ..+...+++| +|++|+..+..+.+++.
T Consensus 811 ~~~~k~R~~v~~~l~~~----------r-~~~~I~~~lnak~~~~~~~--~~~~~~~~~~---l~~~~~~s~~~v~~~~~ 874 (933)
T COG0060 811 EALLKLRDPVNKALEAA----------R-LEKVIGSSLNAKVVIYTED--SELLYKLKPN---LGKVLITSAVEVAKALE 874 (933)
T ss_pred HHHHHHHHHHHHHHHHH----------H-hhhHhhhcceeEEEEeecc--hhhhhhhchh---HHHHHhhhHHHHHhhhc
Confidence 99999999998765421 2 5678999999999999877 5566777888 99999999999999999
Q ss_pred hcCHHHHHHHHhCCcEEEceEEeeCCcEEEEEEecCCCCCcccceeeccCCCEEEEEecCCCHHHHHhhhhHHHHHHHHH
Q 000999 956 AMSQEDILAFEKSGEVTIATHCLQLADIKVVREFKRPDGVTEKEIDAAGDGDVLVILDLRPDESLFEAGVAREVVNRIQK 1035 (1193)
Q Consensus 956 ~~~~~~~~~~~~~g~~~~~g~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~V~lD~~l~~eL~~eGlaREvi~rIQ~ 1035 (1193)
+.++.+..++.. ++| .++.+... ++. .+...|.+|+++++++..||+|||++|+||.
T Consensus 875 ~~~~~~~~~~~~-----~~~-----~~~~~~~~---------eg~----~c~r~~~~~~~~~~~~~~e~l~~~~v~~iq~ 931 (933)
T COG0060 875 ALAGAEAEELVD-----GDG-----VELTVEKA---------EGE----KCPRCWHYDTELGEELEEEGLCRRCVRRIQE 931 (933)
T ss_pred cccchhhhhhhc-----ccc-----eeEEEEec---------cCC----cCCeEEEEcCcCCcccccchHHHHHHHHHhh
Confidence 888777766554 222 22222221 122 3447999999999999999999999999999
Q ss_pred HH
Q 000999 1036 LR 1037 (1193)
Q Consensus 1036 lR 1037 (1193)
||
T Consensus 932 ~r 933 (933)
T COG0060 932 MR 933 (933)
T ss_pred cC
Confidence 98
No 5
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-214 Score=2041.25 Aligned_cols=963 Identities=45% Similarity=0.842 Sum_probs=875.6
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
++|||+++|++|+++|+++++|++..+.++++|+|+|++|||||||.|||||++|+|++|+++||+||+||+|+|++|||
T Consensus 9 ~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD 88 (975)
T PRK06039 9 SQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWD 88 (975)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcC
Confidence 38999999999999999999999887656788999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L 167 (1193)
|||||||.+|+|++|++++++++++|+++|+++|++|+++|.+.|++|++|||+|+||+|+|+||||.|+++|||+|++|
T Consensus 89 ~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l 168 (975)
T PRK06039 89 THGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQL 168 (975)
T ss_pred CCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEE
Q 000999 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYV 247 (1193)
Q Consensus 168 ~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv 247 (1193)
|++||||||.++|+|||+|+|+|||+||+++|+++.++++||+|++.++.+ .+|+||||||||||||+||||||+++|+
T Consensus 169 ~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~-~~l~i~TTrP~Tl~~n~avaV~P~~~Y~ 247 (975)
T PRK06039 169 YDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEEN-EYLLAWTTTPWTLPSNLALAVHPDIDYV 247 (975)
T ss_pred HHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCC-CEEEEEECCccccccceEEEECCCCceE
Confidence 999999999999999999999999999998999999999999999975434 7999999999999999999999999999
Q ss_pred EEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccc
Q 000999 248 KVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYL 327 (1193)
Q Consensus 248 ~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L 327 (1193)
.++. +++.||||+++++.++++ +|+++ ++++|++|
T Consensus 248 ~~~~--~~~~yi~a~~~~~~~~~~------------------------------------------~~~~~-~~~~G~~L 282 (975)
T PRK06039 248 KVEG--GGEVYILAEALLEKVLKE------------------------------------------DYEVV-ETFKGSEL 282 (975)
T ss_pred EEec--CCeEEEEhHHHHHHHhhc------------------------------------------ccEEE-eeecCccc
Confidence 9983 578999999999988651 28888 99999999
Q ss_pred cccccccCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCC
Q 000999 328 VGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDF 407 (1193)
Q Consensus 328 ~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~ 407 (1193)
+|++|.|||+++.. ..+++||++++||++++|||+||+|||||++||++|++||| +++++||++|+|++.+|+|
T Consensus 283 ~G~~~~~P~~~~~~-~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l-----~~~~~id~~G~~~~~~~~~ 356 (975)
T PRK06039 283 EGLEYEPPFPYFAD-EKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGL-----PVVCPVDDDGRFTEEVPDY 356 (975)
T ss_pred cCCEEECCcccccC-CcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCC-----CccceeCCCceEcCCCccc
Confidence 99999877764421 11579999999999999999999999999999999999999 8999999999999999999
Q ss_pred CCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhH
Q 000999 408 SGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRF 487 (1193)
Q Consensus 408 ~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~ 487 (1193)
+|++++|||+.|+++|+++|+|++.+++.|+||||||||+||++++++||||+++++|+++++++++++|+|++++.++|
T Consensus 357 ~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~~P~~~~~~~~ 436 (975)
T PRK06039 357 AGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYPEHIKDGRF 436 (975)
T ss_pred cCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEEECcccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876699
Q ss_pred HhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHhhCC--cccccccCCCccccccCCCCCCcccccccc
Q 000999 488 HNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGE--KIFDLHRHNIDHITIPSSRGPEFGLLRRIE 565 (1193)
Q Consensus 488 ~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~g~--~~~dlh~~~id~~~~~~~~g~~~~~~~r~~ 565 (1193)
.+||++++|||||||||||||||+|+|++|+++.++++++++.+..|. ...++|++++|.++++|++|. .++|++
T Consensus 437 ~~wl~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~---~~~r~~ 513 (975)
T PRK06039 437 GKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGG---TMRRVP 513 (975)
T ss_pred HHHHhcCccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCc---ceEecc
Confidence 999999999999999999999999999999999999999999999887 467899999999999887654 799999
Q ss_pred cceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccc
Q 000999 566 DVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKM 645 (1193)
Q Consensus 566 dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KM 645 (1193)
||||||||||+|||+++|||+++++.|+++||+|++++|+||+||||++|+++|+++++++||++|++||||++++|+||
T Consensus 514 dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KM 593 (975)
T PRK06039 514 DVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKM 593 (975)
T ss_pred ccccceeecCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCc
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCc
Q 000999 646 SKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPL 725 (1193)
Q Consensus 646 SKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~ 725 (1193)
|||+||+|+|.++|++||||+|||||+++++ .++|++|+++.+.+..++++++|||+++|+..+... . ++.+.
T Consensus 594 SKSlGNvIdP~dli~~yGaDalR~~lls~~~-~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~-~-----~~~~~ 666 (975)
T PRK06039 594 SKSLGNYVDPFEVFDKYGADALRWYLLSSSA-PWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANL-D-----GFDYP 666 (975)
T ss_pred CCCCCCcCCHHHHHHHhChHHHHHHHHhCCC-CCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhh-c-----cCCcc
Confidence 9999999999999999999999999998765 578999999997677789999999999998765431 1 12111
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHH
Q 000999 726 DLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYN 805 (1193)
Q Consensus 726 ~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~ 805 (1193)
.........+.+|+||+++++++++.++++|++|+|++|++.|++|++++||||++++|+|+|...+++++.+++.+|++
T Consensus 667 ~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~~~~~~~a~~~L~~ 746 (975)
T PRK06039 667 PAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEEDDPDKLAAYATLYT 746 (975)
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHH
Confidence 00000123568899999999999999999999999999999999999999999999999999986555667789999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000999 806 VLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNIRERHNKPLKSP 884 (1193)
Q Consensus 806 vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~R~~~~i~~k~p 884 (1193)
+|+.+++||||||||+||+||++|+.. ...+|||++.||++++. +|+++++.|+.++++++++|++|++.++++|+|
T Consensus 747 ~L~~l~~lLaPf~Pf~aEei~~~L~~~--~~~~sv~~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~~~~i~~~~p 824 (975)
T PRK06039 747 VLETLSRLAAPFTPFIAEEIYQNLTRE--DAPESVHLADWPEVDESLIDEELEEAMDLVREIVSLGRSARKKAGIKVRQP 824 (975)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcccc--CCCCeeEecCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 999999999999999999999999742 13479999999999888 899999999999999999999999999999999
Q ss_pred cceeEEeCCChhhHHHHHhHHHHHHHHhhcCcceeecCCcceEEEEeeccChHHHhhHHhhhHHHHHHHHHhcCHHHHHH
Q 000999 885 LREMIVVHPDADFLDDIAGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMGVVAKEVKAMSQEDILA 964 (1193)
Q Consensus 885 l~~~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~~~~~~~~~~~~~~d~~~lg~rl~k~~~~v~~~l~~~~~~~~~~ 964 (1193)
|+.++|.+.++ ..+.++. +.++|++++||++|
T Consensus 825 l~~~~v~~~~~-~~~~~~~-~~~~i~~~~nv~~v---------------------------------------------- 856 (975)
T PRK06039 825 LSKITVAEDEE-VAEALER-YEDLIKDELNVKEV---------------------------------------------- 856 (975)
T ss_pred cceEEEecCHH-HHHHHHH-HHHHHHHHhCcccc----------------------------------------------
Confidence 99887765544 5666777 89999999999877
Q ss_pred HHhCCcEEEceEEeeCCcEEEEEEecCCCCCcccceeeccCCCEEEEEecCCCHHHHHhhhhHHHHHHHHHHHhhCCCCC
Q 000999 965 FEKSGEVTIATHCLQLADIKVVREFKRPDGVTEKEIDAAGDGDVLVILDLRPDESLFEAGVAREVVNRIQKLRKKIALEP 1044 (1193)
Q Consensus 965 ~~~~g~~~~~g~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~V~lD~~l~~eL~~eGlaREvi~rIQ~lRK~~~L~v 1044 (1193)
.+||.+....+ +++.+..+++++|+||+++|+||++||+|||+|||||+|||++||++
T Consensus 857 ---------------~~~~~~~~~~~-------~~~~~~~~~~~~v~ld~~~~~~l~~eg~~re~~~~iq~~rk~~~~~~ 914 (975)
T PRK06039 857 ---------------PEEVEIEEEAP-------EGYAAAEEGGGTVALDTELTEELEAEGLARELIRRIQEMRKEAGLDV 914 (975)
T ss_pred ---------------hhheEEEEecC-------CCceEEeeCCEEEEEECCcCHHHHHhhHHHHHHHHHHHHHHhCCCCC
Confidence 35666665554 34555667889999999999999999999999999999999999999
Q ss_pred CceEEEEEEeCCcChHHHHHHHHHHHHHHHHhhcC-CCcCCCCCCCCcceecceeeeeecCeEEEEEEeec
Q 000999 1045 TDVVEVYFESLDEDKSVSQQVLNSQEHYIRDAIGS-PLLPSSTLPSHAVIIGEESFDGISNLSFKISLTRP 1114 (1193)
Q Consensus 1045 ~D~I~v~~~~~~~~~~~l~~~i~~~~~~I~~~l~~-~~~~~~~~~~~~~~~~~~e~~~i~~~~~~i~i~~~ 1114 (1193)
+|+|.|++.+++ ++.++++.|++||++++++ .+....... + ..++ |+++|..++|+|.+.
T Consensus 915 ~~~i~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~----~~~~-~~~~~~~~~~~~~~~ 975 (975)
T PRK06039 915 SDRIRVYISAPE----EVAEAVEKHEDYIKEETLATSLETGEEED-G----EGKE-WDIEGEKVTIGIEKA 975 (975)
T ss_pred CceEEEEEeCcH----HHHHHHHHHHHHHHHhhCcceeecccccc-c----ccee-EeeCCeEEEEEEEEC
Confidence 999999997664 7999999999999997765 333211111 1 2356 899999999999874
No 6
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-183 Score=1647.50 Aligned_cols=807 Identities=30% Similarity=0.528 Sum_probs=732.3
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
+.|||.++|++|+++|++.++|.+... .+.++|+|..||||+||.||||||++.|++|+++||+||+||+|+|+||||
T Consensus 3 ~~ydp~~iE~k~~~~W~~~~~f~~~~~--~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~D 80 (877)
T COG0525 3 KTYDPKEIEEKWYKKWEESGYFKPDPN--EDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTD 80 (877)
T ss_pred CCCChhhhhHHHHHHHHhcCCccCCCC--CCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCC
Confidence 479999999999999999999998643 221569999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHc---CCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHH
Q 000999 88 CHGLPVENEIDKTL---GIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVF 164 (1193)
Q Consensus 88 ~hGlpie~~v~k~l---g~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f 164 (1193)
|||||+|..|||++ |++.. ++|+++|++.|++|..++.+.+++|++|||+|+||++.|+||||.++++|+.+|
T Consensus 81 hAGIaTq~~VEk~l~~~g~~r~----d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~F 156 (877)
T COG0525 81 HAGIATQVVVEKQLAAEGITRH----DLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAF 156 (877)
T ss_pred CCCchHHHHHHHHHHHcCCCcc----ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 99999999999999 77664 499999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCc
Q 000999 165 AQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANF 244 (1193)
Q Consensus 165 ~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~ 244 (1193)
.+||++||||||.++|||||+|+|+|||.|| +|+++++..+||+||+.++. .+|+|+|||||||+|++||||||++
T Consensus 157 v~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EV--e~~e~~g~L~~i~y~l~~~~--~~i~VATTRPEtmlgdtAVaVhP~D 232 (877)
T COG0525 157 VRLYEKGLIYRGERLVNWCPKCRTAISDIEV--EYKEVEGKLYYIKYPLADGD--GYLVVATTRPETLLGDTAVAVHPDD 232 (877)
T ss_pred HHHHHCCceeecCCcccCCCccccchhhhhh--ccceeeeeEEEEEEecCCCC--ceEEEEecCccccccceEEEECCCC
Confidence 9999999999999999999999999999999 89999999999999998763 5999999999999999999999996
Q ss_pred cEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeec
Q 000999 245 TYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSG 324 (1193)
Q Consensus 245 ~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G 324 (1193)
+ + |+
T Consensus 233 e-----------------------------------------------R---------------------Yk-------- 236 (877)
T COG0525 233 E-----------------------------------------------R---------------------YK-------- 236 (877)
T ss_pred h-----------------------------------------------h---------------------hH--------
Confidence 4 2 54
Q ss_pred cccccccc-ccCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccC
Q 000999 325 AYLVGKKY-EPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGK 403 (1193)
Q Consensus 325 ~~L~G~~y-~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~ 403 (1193)
+|+|+.. .|++ ++.+|||+|+||++++|||+|++||||+++||+++++|+| ++++++|++|+++++
T Consensus 237 -~LvGk~v~lPl~-------~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~L-----p~i~i~d~dG~in~~ 303 (877)
T COG0525 237 -HLVGKEVILPLV-------GREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNL-----PLINIIDEDGRINEE 303 (877)
T ss_pred -hhcCCEEecCCC-------CCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCC-----CceEEECCCCeeccC
Confidence 4677777 4886 7899999999999999999999999999999999999999 999999999999988
Q ss_pred CC-CCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhc--CCccccc
Q 000999 404 IT-DFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNK--QTYWVPD 480 (1193)
Q Consensus 404 ~~-~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~--~~~~~P~ 480 (1193)
++ +|+||.+++||++|+++|++.|+|++.+++.|++|||||||+||++++++|||+++..++++++++.+ +++|+|+
T Consensus 304 ~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~ 383 (877)
T COG0525 304 AAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPE 383 (877)
T ss_pred CccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecH
Confidence 75 99999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCccc
Q 000999 481 YVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGL 560 (1193)
Q Consensus 481 ~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~ 560 (1193)
+. ++++.+|+++++|||||||||||||||+|||.+|+++++.....+ +..+ . ..|.. ..
T Consensus 384 ~~-~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~~~~----------~~~~--------~-~~~~~-~~ 442 (877)
T COG0525 384 RM-EKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEPE----------DPAA--------A-EKCPK-EE 442 (877)
T ss_pred HH-HHHHHHHHhhCcCceeeeeeecCcccceEEecCCCcEEeCCcccc----------chhh--------h-ccCch-hc
Confidence 85 589999999999999999999999999999988888876443111 1000 0 01110 26
Q ss_pred ccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEcc
Q 000999 561 LRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAE 640 (1193)
Q Consensus 561 ~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~ 640 (1193)
+.+++|||||||+||+|||++++||.+ .+.|+++||.|++++|+||+|||+++|+++|+.+.++.||++|++||+|+|+
T Consensus 443 ~~qd~DVLDTWFSS~LwPfstlgWp~~-t~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe 521 (877)
T COG0525 443 LEQDEDVLDTWFSSSLWPFSTLGWPEE-TPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDE 521 (877)
T ss_pred ccCCcchhhhhhhcccccccccCCCCc-chHHHhcCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcC
Confidence 889999999999999999999999965 7789998999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCC
Q 000999 641 DGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGA 720 (1193)
Q Consensus 641 ~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~ 720 (1193)
+|+|||||+||||||.++|++||||||||+|++.+. .|+|++|+++.+.+. ++|++|+||+.||+.++....
T Consensus 522 ~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~-~G~Di~~~~~~~~~~-rnF~nKlWNa~Rfv~~~~~~~------ 593 (877)
T COG0525 522 QGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLAS-PGRDINFDEKRVEGY-RNFLNKLWNATRFVLMNLDDL------ 593 (877)
T ss_pred CCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccC-CCcccCcCHHHHHHH-HHHHHHHHhHHHHHHhccccc------
Confidence 999999999999999999999999999999998754 589999999999875 899999999999999876421
Q ss_pred CCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCCChHHHHHH
Q 000999 721 PFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRIA 799 (1193)
Q Consensus 721 ~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~~~~~~~~a 799 (1193)
.+.+... ...+..|+||+++++++++.|+++|++|+|..|+++|++|+ ++||+|||+++|+|++++ ++.+.++
T Consensus 594 --~~~~~~~--~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~--~~~~~~a 667 (877)
T COG0525 594 --GPDDLDL--LALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG--EEEKRAA 667 (877)
T ss_pred --Ccccccc--cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc--HHHHHHH
Confidence 1111100 12368999999999999999999999999999999999998 999999999999999987 5667799
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000999 800 LSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNIRERHN 878 (1193)
Q Consensus 800 ~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~R~~~~ 878 (1193)
.+||+++|..+++||||||||+||+|||.|.. .+|||++.||++++. +|++++..++.+++++..+|++|++.|
T Consensus 668 ~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~-----~~si~~~~~P~~~~~~~d~~a~~~~~~l~~ii~~iR~~r~e~~ 742 (877)
T COG0525 668 RATLYYVLDTLLRLLHPFMPFITEEIWQKLPG-----TESIHLASWPEVDEELIDEEAEKEFELLKEIISAIRNLRAEMN 742 (877)
T ss_pred HHHHHHHHHHHHHHhCCCCccchHHHHHhcCC-----CCeEEeccCCCcchhhccHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999973 279999999999888 999999999999999999999999999
Q ss_pred CCCCCCcceeEEeCCChhhHHHHHhHHHHHHHHhhcCcceeecC---------------CcceEEEEeeccChHHHhhHH
Q 000999 879 KPLKSPLREMIVVHPDADFLDDIAGKLKEYVLEELNVRSLVPCN---------------DTLKYASLRAEPDFSVLGKRL 943 (1193)
Q Consensus 879 i~~k~pl~~~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~~---------------~~~~~~~~~~~~d~~~lg~rl 943 (1193)
+++++|++.+++.. ++..+.++. ...+|...+|+.++++.+ ....++.+...+|...+..||
T Consensus 743 ~~~~~~~~~~~~~~--~~~~~~~~~-~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~~~e~~rl 819 (877)
T COG0525 743 LSPSAPLKVVLVGS--EELEDRLEA-NEDDIKGLANLEELEILSPDPEEPPVEVTAVVGGAELFLPLAGLIDLAAELARL 819 (877)
T ss_pred CCCCCceeEEEecc--HhHHHHHHH-HHHHHHHhcCcceeeecccCccccchhHHhhhccceEEEeccchhhHHHHHhhH
Confidence 99999998666533 455566666 788999999999888763 124567888889999999999
Q ss_pred hhhHHHHHHHHHhc
Q 000999 944 GRSMGVVAKEVKAM 957 (1193)
Q Consensus 944 ~k~~~~v~~~l~~~ 957 (1193)
.|++.++++.++++
T Consensus 820 ~k~~~k~~~e~~~~ 833 (877)
T COG0525 820 EKELEKLEKEIDRI 833 (877)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 7
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8e-173 Score=1645.40 Aligned_cols=830 Identities=28% Similarity=0.513 Sum_probs=712.4
Q ss_pred CCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccch
Q 000999 9 DFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDC 88 (1193)
Q Consensus 9 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~ 88 (1193)
++|++++|++|+++|+++++|++..+.++++|+|+|++|||||||.||||||+|+|++|+++||+||+||+|+|+|||||
T Consensus 23 ~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~ 102 (961)
T PRK13804 23 RAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDC 102 (961)
T ss_pred CCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCC
Confidence 68999999999999999999999776567889999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHH
Q 000999 89 HGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168 (1193)
Q Consensus 89 hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~ 168 (1193)
||||||.+|+|+++.+++ ...++++++|+++|++|+.+|.+.|+++|+|||+|+||+|+|.||||.|+++++|+|.+|+
T Consensus 103 hGlPiE~~vek~~~~~~~-~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~ 181 (961)
T PRK13804 103 HGLPIEWKIEEKYRAKGK-NKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFA 181 (961)
T ss_pred CCcHHHHHHHHhhhhcCC-ChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHH
Confidence 999999999998855443 2357999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCC----CcceEEEeecCCCccCCCceEEEccCc
Q 000999 169 EKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDP----EKAAFVAWTTTPWTLPSNLALCVNANF 244 (1193)
Q Consensus 169 ~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~----~~~~l~vwTTtPwTl~~n~al~V~p~~ 244 (1193)
++||||||.+||+|||.|+|+||+.|| +|++..++++||+|++.+.+ ++.+++||||||||||||+||||||++
T Consensus 182 ~kGliyr~~kpV~Wcp~~~TaLa~~Ev--ey~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~ 259 (961)
T PRK13804 182 AKGQLYRGSKPVMWSVVERTALAEAEI--EYHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDI 259 (961)
T ss_pred HCCCEEeCCcceecCCCCCCCccchhc--ccccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCC
Confidence 999999999999999999999999999 89999999999999997532 226999999999999999999999999
Q ss_pred cEEEEEeccC--------CeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccce
Q 000999 245 TYVKVRNKYT--------GKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYE 316 (1193)
Q Consensus 245 ~Yv~v~~~~~--------~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 316 (1193)
+|+.++.... ++.||||+++++.+.... + ...|+
T Consensus 260 ~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~--------------------~------------------~~~~~ 301 (961)
T PRK13804 260 EYGLYEVTGAENDFWAKPGERLVVADALAESVAKKA--------------------G------------------VESFE 301 (961)
T ss_pred ceEEEEeccccccccccCCcEEEeHHHHHHHHHHHh--------------------C------------------CCCcE
Confidence 9999986421 479999999999886510 0 12389
Q ss_pred Eeeeeeecccccccccc-cCcccccccCCc-----eEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCc
Q 000999 317 KLGEVFSGAYLVGKKYE-PLFDYFKEFSDV-----AFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENL 390 (1193)
Q Consensus 317 i~~~~~~G~~L~G~~y~-Pl~~~~~~~~~~-----~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~ 390 (1193)
++ .+++|++|+|++|. |+. ++ .+|||+++||++++|||+||+|||||++||++|++|||. ++
T Consensus 302 ~~-~~~~g~~L~g~~~~~P~~-------~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~----~~ 369 (961)
T PRK13804 302 RL-ADVKGEDLEKIVCAHPLD-------GLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRT----EI 369 (961)
T ss_pred EE-EEEEhhhccCCEEECCCC-------CcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCC----cc
Confidence 99 99999999999996 553 44 899999999999999999999999999999999999983 57
Q ss_pred ceeecCCCccccCCCC--------CCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccH
Q 000999 391 IVAVDDDGCFTGKITD--------FSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVE 462 (1193)
Q Consensus 391 ~~~vd~~G~~~~~~~~--------~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~ 462 (1193)
+++||++|+|++++|+ |+|+.++|||+.|++.|++.|+|++.+++.|+||||||||+|||+|+++||||+++
T Consensus 370 ~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~ 449 (961)
T PRK13804 370 PVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMD 449 (961)
T ss_pred cccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcC
Confidence 8899999999999887 89999999999999999999999999999999999999999999999999999999
Q ss_pred H-------HHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEE---ecChHHHHHh
Q 000999 463 T-------LKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIV---VDSVDKLEKL 532 (1193)
Q Consensus 463 ~-------~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~---v~s~~el~~l 532 (1193)
+ +|+++++++++++|+|++. .+|+.+||++++||||||||+||||||+|+|++++.+.. +.++.++.+.
T Consensus 450 ~~~~~~~~~k~~al~~i~~v~~~P~~~-~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (961)
T PRK13804 450 KDLGDGTTLRSRALDAIDKTRFVPAAG-QNRLYNMIEDRPDWVISRQRAWGVPIPIFVAEDGEILMDEEVNARIADAFEE 528 (961)
T ss_pred CcccchHHHHHHHHHHHhccEEECHHH-HHHHHHHHhcCccceeeeeccCCceeeEEEcCCCCEeccHHHHHHHHHHHHh
Confidence 8 9999999999999999986 589999999999999999999999999999987544322 2233444444
Q ss_pred hCCcccccccCCCccccccCC-CCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccch
Q 000999 533 SGEKIFDLHRHNIDHITIPSS-RGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGW 611 (1193)
Q Consensus 533 ~g~~~~dlh~~~id~~~~~~~-~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~W 611 (1193)
.|.++ .++++..|- +|++ +++ +.++|++||||||||||+++++.+. +++.| .||+|++++|+||+|||
T Consensus 529 ~g~~~-w~~~~~~~~--~~~~~~~~--~~~~r~~DvlDvWFdSg~s~~~~~~----~~~~~--~~PaD~~~eG~Di~rgW 597 (961)
T PRK13804 529 EGADA-WFAEGAKER--FLGGFHPN--GEFTKVTDILDVWFDSGSTHAFVLE----DRPDL--KWPADLYLEGSDQHRGW 597 (961)
T ss_pred cCCcc-ccccCHHHh--cCcccCcc--cceEecCcceeeeecCCCCcccccc----CCccc--CCCceEEEEEcccccHH
Confidence 55431 112222222 3332 122 4799999999999999998766443 33334 59999999999999999
Q ss_pred HHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHH
Q 000999 612 FYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFA 691 (1193)
Q Consensus 612 f~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~ 691 (1193)
|++++++++++++++||++|++|||++|.+|+|||||+||+|+|.++|++||||+||||+++++ .++|++|+++.+.+
T Consensus 598 F~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls~~--~~~D~~fs~~~l~~ 675 (961)
T PRK13804 598 FNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVASVD--YSDDQRIGKEILKQ 675 (961)
T ss_pred HHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHHhCC--CCCCcccCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999764 47899999999876
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 000999 692 VVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKF 771 (1193)
Q Consensus 692 ~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~f 771 (1193)
. ++.+++|||+++|+.+++..+ .+.....+......+|+||+++++++++.++++|++|+|++|++++++|
T Consensus 676 ~-~~~~~kL~N~~rf~l~nl~~~--------~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f 746 (961)
T PRK13804 676 V-SETYRKLRNTLRWLLGNLAHF--------DPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNF 746 (961)
T ss_pred H-HHHHHHHHHHHHHHHhccccC--------CcccccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5 778999999999998776532 2111000012356789999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHhhhccccCCC-ChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCc
Q 000999 772 L-DNLTNIYVRFNRKRLKGRS-GEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEE 849 (1193)
Q Consensus 772 i-~~lsnwYi~~~r~rl~~~~-~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~ 849 (1193)
+ ++|||||++.+|+|+|.+. ++..+++++.+|+.+|+.+++||||||||+||+||++|+.. ..+|||++.||+++
T Consensus 747 ~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~~---~~~sv~l~~wP~~~ 823 (961)
T PRK13804 747 VNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYPE---EEVSVHLEQFPETP 823 (961)
T ss_pred HHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcccC---CCCceEecCCCCCc
Confidence 9 7999999999999999764 33456778999999999999999999999999999999731 34799999999988
Q ss_pred CC-ccHHHHHHHHHHHH---HH-HHHHHHHHHcCCCCCCCcceeEEeCCChhhHHHHHhHHHHHHHHhhcCcceeec
Q 000999 850 GK-RDERIEQSVLRMMT---II-DLARNIRERHNKPLKSPLREMIVVHPDADFLDDIAGKLKEYVLEELNVRSLVPC 921 (1193)
Q Consensus 850 ~~-~D~~le~~~~~~~~---vi-~~~R~~R~~~~i~~k~pl~~~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~ 921 (1193)
+. .|++++..++.++. +| .++|++|.+..|+.+..... ++...+.+..+.+.. + .|++.++|++|++.
T Consensus 824 ~~~~d~~~~~~~~~~~~~r~~v~~~le~~R~~~~i~~~~e~~v-~l~~~~~~~~~~l~~-~--~l~~~~~vs~~~~~ 896 (961)
T PRK13804 824 AFWRDDALAEKWRKFRAVRDVVTGALEEERAAKRIGSSLEAAP-TVYIADPELLAALEG-L--DFAEICITSQLTVA 896 (961)
T ss_pred chhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeE-EEEcCCHHHHHHHHH-H--HHHHHhhhCceEEe
Confidence 77 78888888766666 33 46677777776655544432 232344344444554 4 38889999998875
No 8
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1e-172 Score=1649.79 Aligned_cols=834 Identities=23% Similarity=0.397 Sum_probs=722.0
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
+.|||+++|++|+++|+++++|++.. +.++++|+|++|||||||.|||||++|+|++|+++||+||+||+|+|++|||
T Consensus 98 ~~yd~~~iE~~w~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D 175 (1066)
T PLN02381 98 KQYSPSAVEKSWYAWWEKSGYFGADA--KSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVD 175 (1066)
T ss_pred cCCCHHHHHHHHHHHHHHCCCccCCc--cCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCC
Confidence 48999999999999999999999854 3578899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L 167 (1193)
|||||+|.+++|+++.+...+..++|+++|+++|++|+.+|.+.|++|+++||+|+||+++|+||||.|+++|||+|.+|
T Consensus 176 ~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L 255 (1066)
T PLN02381 176 HAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRL 255 (1066)
T ss_pred CCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHH
Confidence 99999999999988654444556799999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceeeeceeccccCCCCCccCcccccccccccCCCeE----------------EEEeeecCCCCcceEEEeecCCCc
Q 000999 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEI----------------MVSFPIVGDPEKAAFVAWTTTPWT 231 (1193)
Q Consensus 168 ~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~----------------~v~f~l~~~~~~~~l~vwTTtPwT 231 (1193)
|++||||||.++|||||+|+|+|||+|| +|+++.++++ +++|++.++ + .+++||||||||
T Consensus 256 ~~~GlIyr~~~~VnWcP~~~TaLSd~EV--ey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~-~-~~i~vATtRpEt 331 (1066)
T PLN02381 256 YKEGLIYRDIRLVNWDCTLRTAISDVEV--DYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGG-L-GEIVVATTRIET 331 (1066)
T ss_pred HHCCCEEeccccccCCCCCCCCccHHHh--hhhccccchhhcccCCCcceeeEEEEEEEEEecCC-C-CEEEEecCCHHH
Confidence 9999999999999999999999999999 7899886663 467777643 2 579999999999
Q ss_pred cCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccc
Q 000999 232 LPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAEN 311 (1193)
Q Consensus 232 l~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 311 (1193)
|+|++|+||||+++ +
T Consensus 332 i~g~~avaV~P~d~-----------------------------------------------r------------------ 346 (1066)
T PLN02381 332 MLGDTAIAIHPDDE-----------------------------------------------R------------------ 346 (1066)
T ss_pred HhcccceeeCCCCc-----------------------------------------------c------------------
Confidence 99999999999853 0
Q ss_pred cccceEeeeeeecccccccccccCcccccccCCceEEEEecC-ccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCc
Q 000999 312 NESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADN-YVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENL 390 (1193)
Q Consensus 312 ~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~-~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~ 390 (1193)
| ++|+|+.|.+|+ .++.+|||+++ ||++++|||+||+|||||++||++|++||| ++
T Consensus 347 ---y---------~~L~G~~~~~Pl------~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L-----~~ 403 (1066)
T PLN02381 347 ---Y---------KHLHGKFAVHPF------NGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNL-----EF 403 (1066)
T ss_pred ---h---------hhhCCCEEECCC------CCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCC-----Ce
Confidence 2 367888885433 36899999875 999999999999999999999999999999 99
Q ss_pred ceeecCCCccccCCC-CCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHH
Q 000999 391 IVAVDDDGCFTGKIT-DFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLL 469 (1193)
Q Consensus 391 ~~~vd~~G~~~~~~~-~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll 469 (1193)
++++|++|+|++.++ +|+|++++|||+.|+++|++.|+|++.++++|+|||||||++||++++++||||++++++++++
T Consensus 404 i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al 483 (1066)
T PLN02381 404 INIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQAL 483 (1066)
T ss_pred eeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHH
Confidence 999999999999865 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh-----cCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCC-CEEEEecChHHHHHhhCCcccccccC
Q 000999 470 DNN-----KQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDG-EEIIVVDSVDKLEKLSGEKIFDLHRH 543 (1193)
Q Consensus 470 ~~~-----~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~-~~~~~v~s~~el~~l~g~~~~dlh~~ 543 (1193)
+++ ++++|+|++. .+||.+||+|++|||||||||||||||+|+|..+ +.+...|+.. .....+++
T Consensus 484 ~av~~~~~~~i~~~P~~~-~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~--------~~~~~~~~ 554 (1066)
T PLN02381 484 DAAIDGENKKLEFIPKQY-LAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYN--------DHWVVARN 554 (1066)
T ss_pred HHHhhccCCceEEEChHH-HHHHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCccc--------ceEEEccc
Confidence 977 7899999986 5899999999999999999999999999999521 1111111100 00111222
Q ss_pred CCccccccC--CCCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHH
Q 000999 544 NIDHITIPS--SRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTA 621 (1193)
Q Consensus 544 ~id~~~~~~--~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~ 621 (1193)
..|.+..++ ++|.. ..++|++||||||||||+||+++++||++ .+.|+++||+|++++|+||+||||++|+++|+.
T Consensus 555 ~~~~~~~~~~~~~~~~-~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~-~~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~ 632 (1066)
T PLN02381 555 ESDALLEASQKFPGKK-FELSQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMMGMQ 632 (1066)
T ss_pred hHhhcchhhcccCCCc-cceeecCceeeEEEeCCchHHHHhcCCCC-HHHHhccCCCeeeeecchhhhhHHHHHHHHHHH
Confidence 223222222 12320 25999999999999999999999999975 667999999999999999999999999999999
Q ss_pred ccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHh-------------------------------------hcCh
Q 000999 622 LFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-------------------------------------DYGA 664 (1193)
Q Consensus 622 l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-------------------------------------~yGa 664 (1193)
++++.||++|++||||+|++|+|||||+||||||.++|+ +|||
T Consensus 633 ~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGA 712 (1066)
T PLN02381 633 LGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGT 712 (1066)
T ss_pred hCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccCh
Confidence 999999999999999999999999999999999999999 8999
Q ss_pred hHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHH
Q 000999 665 DALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSA 744 (1193)
Q Consensus 665 DalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~ 744 (1193)
|||||||++++. .++|++|+.+.+.. .+++++||||+++|+..++. +.+.|..... ......+|+||+++
T Consensus 713 DalR~~l~~~~~-~~~di~~~~~~v~~-~r~f~nKlwNa~rf~~~~~~-------~~~~~~~~~~-~~~~~~~DrWILsk 782 (1066)
T PLN02381 713 DALRFALVSYTA-QSDKINLDILRVVG-YRQWCNKLWNAVRFAMSKLG-------DDYTPPATLS-VETMPFSCKWILSV 782 (1066)
T ss_pred HHHHHHHHcCCc-cccccCccHHHHHH-HHHHHHHHHHHHHHHHhhcc-------cccCcccccC-ccccCHHHHHHHHH
Confidence 999999998765 57799999999874 59999999999999876543 1122211000 12346799999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCCC--hHHHHHHHHHHHHHHHHHHHhcCCCchhH
Q 000999 745 TQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSG--EDDCRIALSTLYNVLLTSCKVMAPFTPFF 821 (1193)
Q Consensus 745 l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~~--~~~~~~a~~tL~~vL~~l~~LLaPf~Pfi 821 (1193)
|+.+++.++++|++|+|++|++++++|+ ++||||||+.+|+|++++.. ..++.++..+|+++|..+++||||||||+
T Consensus 783 L~~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfi 862 (1066)
T PLN02381 783 LNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFV 862 (1066)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 9999999999999999999999999998 89999999999999987532 24567788999999999999999999999
Q ss_pred HHHHHHHhhccCC-CCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCcceeEEeCCChhhH
Q 000999 822 TEALYQNMRKVGS-GSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNIRERH-NKPLKSPLREMIVVHPDADFL 898 (1193)
Q Consensus 822 aEei~~~L~~~~~-~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~R~~~-~i~~k~pl~~~vv~~~~~~~~ 898 (1193)
||+||+.|+.... ...+|||++.||++++. +|+++++.|+.++++|..+|++|++. +++.+..+..+++ ..+++..
T Consensus 863 tEELw~~L~~~~~~~~~~SI~~~~~P~~~~~~~d~~le~~~~~l~~ii~~iR~lR~~~~~i~~k~~~~~~~~-~~~~~~~ 941 (1066)
T PLN02381 863 TEELWQRLPQPKDHTRKDSIMISEYPSAVEAWTNEKVEYEMDLVLSTVKCLRSLRAEVLEKQKNERLPAFAL-CRNQEIA 941 (1066)
T ss_pred HHHHHHHhhhhccCCCCCeeEeCCCCCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHccccccCcCCcEEEE-cCCHHHH
Confidence 9999999974210 12469999999999877 89999999999999999999999999 7788888875544 4555556
Q ss_pred HHHHhHHHHHHHHhhcCcceeec-C---C-------------cceEEEEeeccChHHHhhHHhhhHHHHHHHHHhcC
Q 000999 899 DDIAGKLKEYVLEELNVRSLVPC-N---D-------------TLKYASLRAEPDFSVLGKRLGRSMGVVAKEVKAMS 958 (1193)
Q Consensus 899 ~~l~~~l~~~i~~elNv~~v~~~-~---~-------------~~~~~~~~~~~d~~~lg~rl~k~~~~v~~~l~~~~ 958 (1193)
+.++. +..+|+.++|+++|.+. . . .+.|+.+...+|+..+.+||.|++.++.+.|+++.
T Consensus 942 ~~l~~-~~~~i~~l~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~iD~~~E~~rL~K~l~klekei~~~~ 1017 (1066)
T PLN02381 942 AIIKS-HQLEILTLANLSSLKVLLSENDAPPAGCAFENVNENLKVYLQAQGAVNAEAELEKLRNKMDEIQKQQEKLE 1017 (1066)
T ss_pred HHHHH-HHHHHHHhhCCCeeeeeccccccCcccceeeEecCceEEEEECCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777 88999999999988763 1 1 12357778889999999999999999999987643
No 9
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=1.2e-172 Score=1648.39 Aligned_cols=818 Identities=42% Similarity=0.784 Sum_probs=735.5
Q ss_pred CCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccch
Q 000999 9 DFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDC 88 (1193)
Q Consensus 9 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~ 88 (1193)
+||++++|++||++|+++++|++..+.++++++|+|++|||||||.|||||++|+|++|+++||+||+||+|++++||||
T Consensus 5 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~ 84 (861)
T TIGR00392 5 RGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDT 84 (861)
T ss_pred CCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCC
Confidence 79999999999999999999998765456789999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHH
Q 000999 89 HGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168 (1193)
Q Consensus 89 hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~ 168 (1193)
||||||.+|+|++|+++++++..+|+++|+++|++|+.+|.+.|+++|++||+|+||+|+|.||||.|+++|||+|.+|+
T Consensus 85 ~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~ 164 (861)
T TIGR00392 85 HGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAH 164 (861)
T ss_pred CccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999987788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeeeceeccccCCCCCccCcccccc--cccccCCCeEEEEeeecCCCC-----c-ceEEEeecCCCccCCCceEEE
Q 000999 169 EKGLVYKGFKVMPYSTGCKTPLSNFEAGQ--NYKDVPDPEIMVSFPIVGDPE-----K-AAFVAWTTTPWTLPSNLALCV 240 (1193)
Q Consensus 169 ~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~--~y~~~~~~~~~v~f~l~~~~~-----~-~~l~vwTTtPwTl~~n~al~V 240 (1193)
++||||||.++|+|||+|+|+|||+||+. +|+++.++++||+|++.+.+. + .+|+||||||||||||+||||
T Consensus 165 ~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v 244 (861)
T TIGR00392 165 EKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAV 244 (861)
T ss_pred HCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeee
Confidence 99999999999999999999999999964 366699999999999975421 0 189999999999999999999
Q ss_pred ccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeee
Q 000999 241 NANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGE 320 (1193)
Q Consensus 241 ~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 320 (1193)
||+++|+.++...+++.||+|+++++++.+.. . ..|+++ +
T Consensus 245 ~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~--------------------~-------------------~~~~~~-~ 284 (861)
T TIGR00392 245 HPDFEYALVQDNTKVEYFILAKKLVEKLYNKA--------------------G-------------------SDYEII-K 284 (861)
T ss_pred CCCCceEEEEcCCCCcEEEEeHHHHHHHHHhc--------------------C-------------------CceEEE-e
Confidence 99999999987555689999999999986510 0 117788 9
Q ss_pred eeecccccccccccCcccccccCCceE------EE-EecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCccee
Q 000999 321 VFSGAYLVGKKYEPLFDYFKEFSDVAF------RV-IADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVA 393 (1193)
Q Consensus 321 ~~~G~~L~G~~y~Pl~~~~~~~~~~~~------~v-i~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~ 393 (1193)
+++|++|+|++|.+|+ .++.+ || ++++||++++|||+||+|||||++||++|++||| +++++
T Consensus 285 ~~~G~~l~g~~~~~P~------~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l-----~~~~~ 353 (861)
T TIGR00392 285 TFKGSDLEGLEYEHPL------YDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGL-----EVLSP 353 (861)
T ss_pred eecchhhCCCEEECCC------CccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCC-----Ccccc
Confidence 9999999999996444 24455 75 6779999999999999999999999999999999 88999
Q ss_pred ecCCCccccCCC-------CCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHH
Q 000999 394 VDDDGCFTGKIT-------DFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKE 466 (1193)
Q Consensus 394 vd~~G~~~~~~~-------~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~ 466 (1193)
||++|+|+++++ .|+|+.+.||++.|+++|+++|+|++.+++.|+||||||||+||++++++||||+++++++
T Consensus 354 vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~ 433 (861)
T TIGR00392 354 VDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKD 433 (861)
T ss_pred cCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHHHH
Confidence 999999987765 4889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHh---hCCc--ccccc
Q 000999 467 KLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKL---SGEK--IFDLH 541 (1193)
Q Consensus 467 ~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l---~g~~--~~dlh 541 (1193)
++++++++++|+|++. .+++.+||++++||||||||+||||||+|+|++|++.+++.+++++.++ .|.+ ..++|
T Consensus 434 ~~l~~~~~i~~~P~~~-~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~ 512 (861)
T TIGR00392 434 QMLEQIKKVNWVPEWG-EGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWFEDLH 512 (861)
T ss_pred HHHHHhCCcEEECchH-HHHHHHHHhCCCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCccccccch
Confidence 9999999999999986 5899999999999999999999999999999999988888998887653 3443 45789
Q ss_pred cCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHH
Q 000999 542 RHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTA 621 (1193)
Q Consensus 542 ~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~ 621 (1193)
++++|.+.++|++| +.++|++||||||||||++|++..+||+++ +.|++|||+|++++|+||+||||+++++.+++
T Consensus 513 ~~~~~~~~~~~~~~---~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~-~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~ 588 (861)
T TIGR00392 513 RDFLDKITLKSGDG---GEYRRVPDVLDVWFDSGSMPYASIHYPFEN-EKFKEVFPADFILEGSDQTRGWFYSSLAIGTA 588 (861)
T ss_pred hhhcCchhccCCCC---cceEEccccccchhhcCcchHHhcCCCCCc-chhhccCCceEEEEecchhccHHHHHHHHHHH
Confidence 99999988877544 379999999999999999999999999754 46999999999999999999999999999999
Q ss_pred ccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHH
Q 000999 622 LFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWY 701 (1193)
Q Consensus 622 l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~ 701 (1193)
+++..||++|++||||++.+|+|||||+||+|+|.++|++||||+|||||+++ + .++|++|+++.+....+++.+++|
T Consensus 589 ~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~-~-~~~D~~fs~~~l~~~~~~~~n~l~ 666 (861)
T TIGR00392 589 LFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASS-D-PWEDLRFSDEILKQVVEKYRKIRW 666 (861)
T ss_pred HcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhC-C-CCCCceECHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 4 578999999999876566889999
Q ss_pred HHHHHHH--HHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHH
Q 000999 702 NAYRFLV--QNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNI 778 (1193)
Q Consensus 702 N~~~f~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnw 778 (1193)
|+++|+. .++. ++.+............+|+|++++++.+++.+.++|++|+|++|++.+++|+ +++|||
T Consensus 667 N~~~~~~~~~~l~--------~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~ 738 (861)
T TIGR00392 667 NTYRFLLTYANLD--------KFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNW 738 (861)
T ss_pred HHHHHHHHHhccc--------cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9999987 4332 1222100000113467899999999999999999999999999999999998 559999
Q ss_pred HHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC-ccHHHH
Q 000999 779 YVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERIE 857 (1193)
Q Consensus 779 Yi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~le 857 (1193)
|++.+|+|+|....++.+++++.+|+.+|+.+++||+|||||+||+||+.|+.. ...+|||+++||++++. +|++++
T Consensus 739 Yi~~~k~~lw~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~--~~~~si~~~~wP~~~~~~~d~~~~ 816 (861)
T TIGR00392 739 YIRIIRDRLYCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGG--EEEESVHLNLWPEVDEEFIDEALE 816 (861)
T ss_pred HHHHhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc--CCCCceeccCCCCCchhhcCHHHH
Confidence 999999999976544444578899999999999999999999999999999742 12479999999999887 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCcceeEEeCCC
Q 000999 858 QSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVHPD 894 (1193)
Q Consensus 858 ~~~~~~~~vi~~~R~~R~~~~i~~k~pl~~~vv~~~~ 894 (1193)
..|+.++++++.+|++|++.++++++|++..+|.++.
T Consensus 817 ~~~~~l~~~i~~ir~ir~~~~~~~~~~~~~~~i~~~~ 853 (861)
T TIGR00392 817 ANMAIVREIVEAFLALRDAANKKLRQPLKELVIGKSL 853 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhChhhhhHhhcCEEcCCc
Confidence 9999999999999999999999999999987775433
No 10
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=4.7e-172 Score=1640.91 Aligned_cols=813 Identities=29% Similarity=0.484 Sum_probs=725.2
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
+.|||+++|++|+++|+++++|++..+ .++++|+|++|||||||.||+||++++|++|+++||+||+||+|+|++|||
T Consensus 3 ~~y~~~~iE~~~~~~W~~~~~f~~~~~--~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D 80 (861)
T TIGR00422 3 KDYDPHEVEKKWYKKWEKSGFFKPDGN--SNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTD 80 (861)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCcc--cCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcC
Confidence 479999999999999999999998654 467889999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L 167 (1193)
|||||||.+|+|+++..++. ..++|+++|+++|++|+++|...|++|+++||+|+||+++|+||||.|+++|||+|.+|
T Consensus 81 ~~Glp~e~~vek~~~~~g~~-~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 159 (861)
T TIGR00422 81 HAGIATQVKVEKKLGAEGKT-KHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRL 159 (861)
T ss_pred cCCCcHHHHHHHHhcccCCc-hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHH
Confidence 99999999999999877654 46799999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEE
Q 000999 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYV 247 (1193)
Q Consensus 168 ~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv 247 (1193)
|++||||+|.++|+|||+|+|+|||+|| +|+++.++++||+|++.+.++ .+|+||||||||||||+||||||++++
T Consensus 160 ~~~GlIy~~~~~v~wcp~~~t~lsd~Ev--~~~~~~~~~~~i~f~~~~~~~-~~l~vaTtrPeTl~~~~av~V~P~~~r- 235 (861)
T TIGR00422 160 YEKGLIYRGEYLVNWDPKLNTAISDIEV--EYKEVKGKLYYIRYPLANGSK-DYLVVATTRPETMFGDTAVAVHPEDER- 235 (861)
T ss_pred HHCCCeeecCcccccCCCCCCcchHhHh--hcccccceEEEEEEEecCCCC-CEEEEEeCCcchhhhCeEEEECCCchH-
Confidence 9999999999999999999999999999 799999999999999987543 799999999999999999999999541
Q ss_pred EEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccc
Q 000999 248 KVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYL 327 (1193)
Q Consensus 248 ~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L 327 (1193)
|+ +|
T Consensus 236 -------------------------------------------------------------------y~---------~l 239 (861)
T TIGR00422 236 -------------------------------------------------------------------YK---------HL 239 (861)
T ss_pred -------------------------------------------------------------------HH---------Hh
Confidence 32 57
Q ss_pred cccccc-cCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCC
Q 000999 328 VGKKYE-PLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITD 406 (1193)
Q Consensus 328 ~G~~y~-Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~ 406 (1193)
+|++|. |++ ++.+|||+++||++++|||+||+|||||++||++|++||| ++++++|++|+|++.+|.
T Consensus 240 ~g~~~~~P~~-------~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l-----~~~~~id~~G~~~~~~~~ 307 (861)
T TIGR00422 240 IGKKVILPLT-------GRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNL-----EFINILDEDGLLNENAGK 307 (861)
T ss_pred cCCEEEcCCC-------CCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCC-----CccceeCCCCeEcCCCcc
Confidence 888885 764 6789999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhc--CCccccchhhh
Q 000999 407 FSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNK--QTYWVPDYVKE 484 (1193)
Q Consensus 407 ~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~--~~~~~P~~~~~ 484 (1193)
|+|++++|||++|+++|+++|++++.++++|+||||||||+|+++++++||||++++++++++++++ +++|+|+++ .
T Consensus 308 ~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~-~ 386 (861)
T TIGR00422 308 YQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRM-E 386 (861)
T ss_pred cCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHH-H
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 689999996 5
Q ss_pred HhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCccccccc
Q 000999 485 KRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRI 564 (1193)
Q Consensus 485 ~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~ 564 (1193)
++|.+||++++|||||||||||||||+|+|++|+.+++.++..++.... .+|.. ..++|+
T Consensus 387 ~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~~~-------------------~~~~~-~~~~~~ 446 (861)
T TIGR00422 387 KRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDDKT-------------------NTGPS-VELEQD 446 (861)
T ss_pred HHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhhhhh-------------------ccCCc-ccEEEC
Confidence 8999999999999999999999999999999998877766654432211 11210 369999
Q ss_pred ccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCcc
Q 000999 565 EDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKK 644 (1193)
Q Consensus 565 ~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~K 644 (1193)
+||||||||||+||+++++||.++ ++|+++||+|++++|+||+|||+++|++++++++++.||++|++||||+|++|+|
T Consensus 447 ~dVlDtWFdS~l~~~s~~g~p~~~-~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~K 525 (861)
T TIGR00422 447 TDVLDTWFSSSLWPFSTLGWPDET-KDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRK 525 (861)
T ss_pred CCcccceeccchHHHHHhCCCCCh-HHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCC
Confidence 999999999999999999999654 6799999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCC
Q 000999 645 MSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIP 724 (1193)
Q Consensus 645 MSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p 724 (1193)
||||+||+|+|.++|++||||++||||++.++ .++|++|+++.+.+. ++++++|||+++|+..+...+ ..+.+
T Consensus 526 MSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~-~~~d~~f~~~~~~~~-~~~~nkl~N~~rf~~~~~~~~-----~~~~~ 598 (861)
T TIGR00422 526 MSKSLGNVIDPLDVIEKYGADALRFTLASLVT-PGDDINFDWKRVESA-RNFLNKLWNASRFVLMNLSDD-----LELSG 598 (861)
T ss_pred CCcCCCCCCCHHHHHHHhChHHHHHHHHhCCC-CCCCceecHHHHHHH-HHHHHHHHHHHHHHHhccccc-----ccccc
Confidence 99999999999999999999999999998765 478999999999875 779999999999998764321 01111
Q ss_pred chhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCCChHHHHHHHHHH
Q 000999 725 LDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRIALSTL 803 (1193)
Q Consensus 725 ~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL 803 (1193)
. ......+|+||+++++.+++.++++|++|+|+.|++.+++|+ +++|||||+++|+|++++. .+++.+++.+|
T Consensus 599 ~-----~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~~-~~~~~~~~~~l 672 (861)
T TIGR00422 599 G-----EEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGN-EAEKKAARDTL 672 (861)
T ss_pred c-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCC-cHHHHHHHHHH
Confidence 0 012467899999999999999999999999999999999997 8999999999999998653 35677899999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 000999 804 YNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNIRERHNKPLK 882 (1193)
Q Consensus 804 ~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~R~~~~i~~k 882 (1193)
+++|+.+++||||||||+||+||++|+. ..+|||+++||++++. +|++++..|+.++++++.+|++|++.+++++
T Consensus 673 ~~~l~~~~~lL~Pf~P~itEelw~~L~~----~~~si~~~~~P~~~~~~~d~~~e~~~~~l~~ii~~iR~~r~~~~i~~~ 748 (861)
T TIGR00422 673 YYVLDKALRLLHPFMPFITEEIWQHFKE----GADSIMLQSYPVVDAEFVDEEAEKAFELLKEIIVSIRNLKAESNIPPN 748 (861)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhCcc----cCCceeecCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999974 3479999999999887 8999999999999999999999999999999
Q ss_pred CCcceeEEeCCChhhHHHHHhHHHHHHHHhhcCcceeecCCcc--------------eEEEEeeccChHHHhhHHhhhHH
Q 000999 883 SPLREMIVVHPDADFLDDIAGKLKEYVLEELNVRSLVPCNDTL--------------KYASLRAEPDFSVLGKRLGRSMG 948 (1193)
Q Consensus 883 ~pl~~~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~~~~~--------------~~~~~~~~~d~~~lg~rl~k~~~ 948 (1193)
+|+..+++. .+.+..+.++. +..+|+.++|+++|++..+.. .++.+....|...+-+|+.|++.
T Consensus 749 ~~l~~~i~~-~~~~~~~~l~~-~~~~I~~l~~v~~v~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~~e~~~l~k~l~ 826 (861)
T TIGR00422 749 APLKVLLIY-TEAETAERLKL-NAVDIKGAINFSEVEVVIEKPEVTEAVVELVPGFEIIIPVKGLINKAKELARLQKQLD 826 (861)
T ss_pred CcceEEEEe-CCHHHHHHHHH-HHHHHhhhcCCCceEeeccCCccccceEEEccCcEEEEEhHhhcCHHHHHHHHHHHHH
Confidence 999877654 44445566777 889999999999998864322 12333344455555555666666
Q ss_pred HHHHHHHh
Q 000999 949 VVAKEVKA 956 (1193)
Q Consensus 949 ~v~~~l~~ 956 (1193)
++++.|++
T Consensus 827 ~~~~~i~~ 834 (861)
T TIGR00422 827 KEKKEVIR 834 (861)
T ss_pred HHHHHHHH
Confidence 55555543
No 11
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.8e-172 Score=1634.58 Aligned_cols=819 Identities=31% Similarity=0.573 Sum_probs=716.5
Q ss_pred CCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccch
Q 000999 9 DFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDC 88 (1193)
Q Consensus 9 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~ 88 (1193)
++|++++|++|+++|+++++|++..+.++++++|+|++|||||||.||||||+|+|++|+++||+||+||+|+|++||||
T Consensus 18 ~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~ 97 (912)
T PRK05743 18 RANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDC 97 (912)
T ss_pred CCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCC
Confidence 69999999999999999999998665557889999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHH
Q 000999 89 HGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168 (1193)
Q Consensus 89 hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~ 168 (1193)
||||||.+|+|++|++. .++++++|+++|++|+.++.+.|+++|++||+|+||+++|.||||.|.++|+|+|.+|+
T Consensus 98 ~Glpie~~~ek~l~~~~----~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~ 173 (912)
T PRK05743 98 HGLPIELKVEKKLGKKG----KKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMA 173 (912)
T ss_pred CccHhHHHHHHHcCCcc----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999888653 35899999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCC-----CcceEEEeecCCCccCCCceEEEccC
Q 000999 169 EKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDP-----EKAAFVAWTTTPWTLPSNLALCVNAN 243 (1193)
Q Consensus 169 ~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~-----~~~~l~vwTTtPwTl~~n~al~V~p~ 243 (1193)
++||||||.++|+|||.|+|+|||+|| +|++..++++||+|++.+.. .+.+|+||||||||||||+||||||+
T Consensus 174 ~~Gliy~~~~~v~w~p~~~TaLad~Ev--ey~~~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~ 251 (912)
T PRK05743 174 KKGYLYKGLKPVYWCPDCGSALAEAEV--EYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPE 251 (912)
T ss_pred HCCCEEecceeEecCCCcCCCchhhHh--hcccccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCC
Confidence 999999999999999999999999999 79999999999999997642 23699999999999999999999999
Q ss_pred ccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeee
Q 000999 244 FTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFS 323 (1193)
Q Consensus 244 ~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~ 323 (1193)
++|+.++. ++++||+|+++++++.... ..++|+++ ++++
T Consensus 252 ~~Y~~~~~--~~~~~i~a~~~~~~~~~~~--------------------------------------~~~~~~~~-~~~~ 290 (912)
T PRK05743 252 FDYVLVEV--EGEKLIVAKDLVESVLERF--------------------------------------GWEDYEVL-ATFK 290 (912)
T ss_pred CeeEEEEc--CCCEEEEeHHhHHHHHHhh--------------------------------------CCcceEEE-EEec
Confidence 99999985 4579999999999885410 01238888 9999
Q ss_pred cccccccccc-cCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCcccc
Q 000999 324 GAYLVGKKYE-PLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTG 402 (1193)
Q Consensus 324 G~~L~G~~y~-Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~ 402 (1193)
|++|+|++|. |+. ++.+|||+++||++++|||+||+|||||++||++|++||| +++++||++|+|++
T Consensus 291 G~~l~g~~~~~Pl~-------~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L-----~~~~~vd~~G~~~~ 358 (912)
T PRK05743 291 GKELEGLVAQHPFY-------DRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGL-----EVLNPVDDDGRYTE 358 (912)
T ss_pred hHhhcCCEEECCCC-------CCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCC-----CcccccCCCceEec
Confidence 9999999996 653 6789999999999999999999999999999999999999 89999999999999
Q ss_pred CCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHH--HHHHHHHhhcCCccccc
Q 000999 403 KITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVET--LKEKLLDNNKQTYWVPD 480 (1193)
Q Consensus 403 ~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~--~k~~ll~~~~~~~~~P~ 480 (1193)
.+|+|+|++++||++.|++.|+++|+|++.+++.|+||||||||+||+||+++||||++++ +|+++++++++++|+|+
T Consensus 359 ~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~P~ 438 (912)
T PRK05743 359 EAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPA 438 (912)
T ss_pred CCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEECh
Confidence 9999999999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred hhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEe----cChHHHHHhhCCcc-cccccCCCccccccCCCC
Q 000999 481 YVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVV----DSVDKLEKLSGEKI-FDLHRHNIDHITIPSSRG 555 (1193)
Q Consensus 481 ~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v----~s~~el~~l~g~~~-~dlh~~~id~~~~~~~~g 555 (1193)
+. .+|+.+||++++||||||||+||||||+|+|++|+++++- .+++++.+..|..+ .+.+ ++++ +|+ ++
T Consensus 439 ~~-~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~---~~~~-~~~-~~ 512 (912)
T PRK05743 439 WG-KNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELD---AKEL-LPD-EA 512 (912)
T ss_pred HH-HHHHHHHHhcCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccC---HHHh-cCC-cc
Confidence 85 5899999999999999999999999999999998877641 12223232333221 1111 1111 342 23
Q ss_pred CCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEe
Q 000999 556 PEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNG 635 (1193)
Q Consensus 556 ~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG 635 (1193)
..+.|++||||||||||++|++..++ +. +.+||+|++++|+||+||||+++++.++++++.+|||+|++||
T Consensus 513 ---~~~~~~~DvlDvWfdSg~s~~~~~~~---~~---~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG 583 (912)
T PRK05743 513 ---DEYEKETDILDVWFDSGSSHAAVLEQ---RP---ELGYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHG 583 (912)
T ss_pred ---cCEEECCchhhhhhhhCCCHHHHhcC---cc---ccCCCceEEEecccccchHHHHHHHHHHHhcCCCccceeEEee
Confidence 37999999999999999999988764 11 2689999999999999999999999999999999999999999
Q ss_pred eEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 000999 636 LVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLE 715 (1193)
Q Consensus 636 ~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~ 715 (1193)
||+|++|+|||||+||+|+|.++|++||||+||||++++++ ++|++|+++.+.+. .+.+++|||+++|+..++..
T Consensus 584 ~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~~~~--~~D~~~s~~~l~~~-~~~~~kl~N~~rf~~~nl~~-- 658 (912)
T PRK05743 584 FTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDY--SGDVRISDEILKQV-AEAYRRIRNTLRFLLGNLND-- 658 (912)
T ss_pred eEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHhcCC--CCCeeecHHHHHHH-HHHHHHHHHHHHHHHhCccC--
Confidence 99999999999999999999999999999999999997544 78999999998774 67889999999999876542
Q ss_pred hhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCC-Ch
Q 000999 716 IEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRS-GE 793 (1193)
Q Consensus 716 ~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~-~~ 793 (1193)
+.+.....+...+..+|+||+++++++++.++++|++|+|++|++.+++|+ +++||||++.+|+|+|... ++
T Consensus 659 ------~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~ 732 (912)
T PRK05743 659 ------FDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADS 732 (912)
T ss_pred ------CCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCc
Confidence 222110000123567899999999999999999999999999999999999 6999999999999999764 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC-ccHHHHHHHHHHHH----HHH
Q 000999 794 DDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERIEQSVLRMMT----IID 868 (1193)
Q Consensus 794 ~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~----vi~ 868 (1193)
..++++..+|+.+|..+++||+|||||+||+||++|+. +..+|||++.||++++. .|+.++..++.+++ +..
T Consensus 733 ~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~---~~~~sv~~~~wP~~~~~~~~~~~~~~~~~~~~~r~~v~~ 809 (912)
T PRK05743 733 LARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPG---EREESVFLEEWPEVPELADDEELLAKWEELLEVRDEVNK 809 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccc---CCCCceEEecCCCCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999963 13479999999998877 88899999998884 677
Q ss_pred HHHHHHHHcCCCCCCCcceeEEeCCChhhHHHHHhHHHHHHHHhhcCcceeec
Q 000999 869 LARNIRERHNKPLKSPLREMIVVHPDADFLDDIAGKLKEYVLEELNVRSLVPC 921 (1193)
Q Consensus 869 ~~R~~R~~~~i~~k~pl~~~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~ 921 (1193)
.+|.+|.+..|+...+... ++..+. +.+.. +.+.|+..++|++|++.
T Consensus 810 ~i~~~r~~~~i~~~~~~~~--~~~~~~---~~l~~-~~~~l~~~~~vs~v~~~ 856 (912)
T PRK05743 810 ALEEARKEKVIGSSLEAEV--TLYADA---ALLES-LGDELRFLLIVSQVEVA 856 (912)
T ss_pred HHHHhhhccCCCcccceEE--EEEcCH---HHHHH-HHHHHHHHhhhCceEEe
Confidence 7788888777666555543 333333 33444 66678889999998875
No 12
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.7e-170 Score=1641.17 Aligned_cols=834 Identities=23% Similarity=0.373 Sum_probs=725.4
Q ss_pred CCCCchHHHHHHHHHHHhcCCccccc--ccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQL--DRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~--~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
+.|||.++|++|+++|+++++|++.. +.+.++++|+|++|||||||.|||||++|+|++|+++||+||+||+|+|++|
T Consensus 26 ~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G 105 (995)
T PTZ00419 26 ASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPG 105 (995)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 47999999999999999999999853 2245788999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHH
Q 000999 86 WDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFA 165 (1193)
Q Consensus 86 ~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~ 165 (1193)
|||||||+|..||++++.+......++|+++|+++|++|+.+|.+.|++||++||+|+||+++|+||||.|.++|+|+|.
T Consensus 106 ~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~ 185 (995)
T PTZ00419 106 TDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFV 185 (995)
T ss_pred CCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHH
Confidence 99999999999998775443444567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCceeeeceeccccCCCCCccCcccccccccccCCCeE----------------EEEeeecCCCCcceEEEeecCC
Q 000999 166 QLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEI----------------MVSFPIVGDPEKAAFVAWTTTP 229 (1193)
Q Consensus 166 ~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~----------------~v~f~l~~~~~~~~l~vwTTtP 229 (1193)
+||++||||||.++|+|||.|+|+|||+|| +|++++++++ |++|++.+.++ .+|+||||||
T Consensus 186 ~l~~~Gliyr~~~~V~wcp~~~Talsd~EV--e~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~-~~l~vaTTrP 262 (995)
T PTZ00419 186 RLYEDGLIYRDTRLVNWCCYLKTAISDIEV--EFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQ-EEIVVATTRI 262 (995)
T ss_pred HHHHCCCEEecceeeecCCCCCCCCchhhc--ccccccccceeeccccccccccceeEEEEEeecCCCC-cEEEEEeCCc
Confidence 999999999999999999999999999999 6888885554 68899866422 4999999999
Q ss_pred CccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcc
Q 000999 230 WTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSA 309 (1193)
Q Consensus 230 wTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 309 (1193)
||||||+||||||++++
T Consensus 263 eTl~g~~avav~P~d~~--------------------------------------------------------------- 279 (995)
T PTZ00419 263 ETMLGDVAVAVHPKDER--------------------------------------------------------------- 279 (995)
T ss_pred chhhhCeEEEECCCCcH---------------------------------------------------------------
Confidence 99999999999999641
Q ss_pred cccccceEeeeeeecccccccccc-cCcccccccCCceEEEEecC-ccccCCCCCceeecCCCChhhHHHHHHcCCCccC
Q 000999 310 ENNESYEKLGEVFSGAYLVGKKYE-PLFDYFKEFSDVAFRVIADN-YVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKG 387 (1193)
Q Consensus 310 ~~~~~~~i~~~~~~G~~L~G~~y~-Pl~~~~~~~~~~~~~vi~~~-~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~ 387 (1193)
|+ +|+|++|. |+. .++.+|||+++ ||++++|||+||+|||||++||++|++|||
T Consensus 280 -----y~---------~l~G~~~~~Pl~------~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L---- 335 (995)
T PTZ00419 280 -----YK---------KLHGKELIHPFI------PDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNL---- 335 (995)
T ss_pred -----HH---------HhcCCEEECCcc------CCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCC----
Confidence 32 57888885 651 26799999999 999999999999999999999999999999
Q ss_pred CCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHH
Q 000999 388 ENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEK 467 (1193)
Q Consensus 388 ~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ 467 (1193)
++++++|++|+|++++|+|+|+.++|||+.|+++|++.|++++.+++.|+||||||||+||++++++||||++++++++
T Consensus 336 -~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~ 414 (995)
T PTZ00419 336 -PFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKR 414 (995)
T ss_pred -CeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc--CCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCE--------EEEec-ChHHHHHhhCCc
Q 000999 468 LLDNNK--QTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEE--------IIVVD-SVDKLEKLSGEK 536 (1193)
Q Consensus 468 ll~~~~--~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~--------~~~v~-s~~el~~l~g~~ 536 (1193)
++++++ +++|+|++. .++|.+||+|++|||||||||||||||+|+|++|+. .++++ +.+++....+
T Consensus 415 al~~v~~~~i~~~P~~~-~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 491 (995)
T PTZ00419 415 AVEAVRNGELKIIPSSH-ENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAK-- 491 (995)
T ss_pred HHHHhhcCCeEEEChHH-HHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhc--
Confidence 999986 799999986 589999999999999999999999999999988653 22322 2222221110
Q ss_pred ccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHH
Q 000999 537 IFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLM 616 (1193)
Q Consensus 537 ~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~ 616 (1193)
+...++ ++| ..++|++||||||||||+||+++++||. +.+.|+++||+|++++|+||+||||++|+
T Consensus 492 ---------~~~~~~-~~~---~~~~~~~DVlDtWFdS~l~p~~~~g~p~-~~~~~~~~~P~d~~~~G~Dii~~W~arm~ 557 (995)
T PTZ00419 492 ---------KKFGLS-EED---FELEQDEDVLDTWFSSGLFPFSTLGWPD-QTDDLQRFFPTSLLETGSDILFFWVARMV 557 (995)
T ss_pred ---------cccCCc-ccc---CCeEECCceEEEEEeCCHHHHHHhCCCC-ChHHHhhcCCCcEEEechhHHhHHHHHHH
Confidence 000011 112 2699999999999999999999999995 45679999999999999999999999999
Q ss_pred HHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHh------------------------------------
Q 000999 617 VLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN------------------------------------ 660 (1193)
Q Consensus 617 ~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~------------------------------------ 660 (1193)
++|+.++++.||++|++||+|+|++|+|||||+||||||.++|+
T Consensus 558 ~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi 637 (995)
T PTZ00419 558 MMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGI 637 (995)
T ss_pred HHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCC
Confidence 99999999999999999999999999999999999999999999
Q ss_pred -hcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCch-hhhhhcCCchhH
Q 000999 661 -DYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLD-LATLQKSSNVLD 738 (1193)
Q Consensus 661 -~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~D 738 (1193)
+||||+|||||++.+. .++|++|+.+.+.. .+++++++||+++|+.+++..+.. ...+.. ...+......+|
T Consensus 638 ~~yGaDalR~~l~~~~~-~~~Di~~~~~~v~~-~~~f~nklwN~~rf~~~~~~~~~~----~~~~~~~~~~~~~~~~~~D 711 (995)
T PTZ00419 638 PECGTDALRFGLLAYTQ-QGRNINLDINRVVG-YRHFCNKLWNAVKFALMKLLKDFN----LPNSTLFKPNNVESLPWED 711 (995)
T ss_pred cccCcHHHHHHHHhcCC-CCCCccccHHHHHH-HHHHHHHHHHHHHHHHhccccccc----ccccccccccccccCCHHH
Confidence 8999999999998655 57899999999985 488999999999999876642110 000000 000011345789
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCC
Q 000999 739 QWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPF 817 (1193)
Q Consensus 739 ~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf 817 (1193)
+||+++++.+++.++++|++|+|+.|++++++|+ +++|||||+++|+|++...+.+++.+++.+|+++|+.+++|||||
T Consensus 712 ~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~Pf 791 (995)
T PTZ00419 712 KWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPM 791 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999996 899999999999998433334556788999999999999999999
Q ss_pred chhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceeEEeCCChh
Q 000999 818 TPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVHPDAD 896 (1193)
Q Consensus 818 ~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~R~~~~i~~k~pl~~~vv~~~~~~ 896 (1193)
|||+||+||++|+... ...+|||++.||++++. .|++++..|+.+++++..+|++|++.+++.++|+..+++ ..+++
T Consensus 792 mPfitEElw~~L~~~~-~~~~si~~~~~P~~~~~~~d~~~e~~~~~~~~ii~~iR~~r~~~~i~~~~~l~~~i~-~~~~~ 869 (995)
T PTZ00419 792 MPFITEELYQRLPNYL-RKSESISIAKYPQPNPGWNNEALDEEMKIIMSIVKSIRSLIATLGIPNKTKPDCYVT-AKDAE 869 (995)
T ss_pred hhhhHHHHHHhhhccC-CCCCeeeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEE-eCCHH
Confidence 9999999999997421 12469999999998877 899999999999999999999999999999999987644 45555
Q ss_pred hHHHHHhHHHHHHHHhhcCcceeec---C---C-------------cceEEEEeeccChHHHhhHHhhhHHHHHHHHHhc
Q 000999 897 FLDDIAGKLKEYVLEELNVRSLVPC---N---D-------------TLKYASLRAEPDFSVLGKRLGRSMGVVAKEVKAM 957 (1193)
Q Consensus 897 ~~~~l~~~l~~~i~~elNv~~v~~~---~---~-------------~~~~~~~~~~~d~~~lg~rl~k~~~~v~~~l~~~ 957 (1193)
..+.++. +..+|+.++|+++|.+. . . .+.++.+...+|+..+..||.|++.++.+.++++
T Consensus 870 ~~~~~~~-~~~~i~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~id~~~E~~rL~K~l~kl~~ei~~~ 948 (995)
T PTZ00419 870 LIELIES-AENLISTLAKIGSVSVIPPIEEEAEVPKGCGFDVVDNKVIIYLNLDEFIDLKKELAKLEKKLAKLQKSLESY 948 (995)
T ss_pred HHHHHHH-HHHHHHHhcCCCeeEEeccccccccCcccceeeEecCceEEEEECCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777 88999999999988774 1 0 1235667788999999999999999999998764
Q ss_pred C
Q 000999 958 S 958 (1193)
Q Consensus 958 ~ 958 (1193)
.
T Consensus 949 ~ 949 (995)
T PTZ00419 949 L 949 (995)
T ss_pred H
Confidence 3
No 13
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=3.7e-170 Score=1620.01 Aligned_cols=830 Identities=27% Similarity=0.476 Sum_probs=705.9
Q ss_pred CCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccch
Q 000999 9 DFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDC 88 (1193)
Q Consensus 9 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~ 88 (1193)
+-|+++.|++|+++|+++++|++..+.+ .+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||
T Consensus 2 ~~~~~~~E~~~~~~W~~~~~y~~~~~~~-~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~ 80 (974)
T PLN02843 2 RANSVTREPEIQKLWEENQVYKRVSDRN-NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDC 80 (974)
T ss_pred CCChHHhhHHHHHHHHHCCCcccccccc-CCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCC
Confidence 4688999999999999999999876533 346799999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHH
Q 000999 89 HGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLY 168 (1193)
Q Consensus 89 hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~ 168 (1193)
||||||.+++|+++.. ...++++++|+++|++|+.+|.+.|+++|+|||+|+||+++|+||||.|+++++|+|.+|+
T Consensus 81 hGlpie~~vek~l~~~---~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~ 157 (974)
T PLN02843 81 HGLPIELKVLQSLDQE---ARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMF 157 (974)
T ss_pred CCcHHHHHHHHHhchh---hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHH
Confidence 9999999999988753 3456899999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeeeceeccccCCCCCccCcccccccccc-cCCCeEEEEeeecCCCC-----------cceEEEeecCCCccCCCc
Q 000999 169 EKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKD-VPDPEIMVSFPIVGDPE-----------KAAFVAWTTTPWTLPSNL 236 (1193)
Q Consensus 169 ~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~-~~~~~~~v~f~l~~~~~-----------~~~l~vwTTtPwTl~~n~ 236 (1193)
++||||||.|||+|||+|+|+||++|| +|++ ..++++||+|++.+... +.+++||||||||||||+
T Consensus 158 ~~GlIyr~~kpV~Wcp~~~Talae~Ev--ey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~ 235 (974)
T PLN02843 158 LNGYIYRGRKPVHWSPSSRTALAEAEL--EYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANA 235 (974)
T ss_pred HCCCEEecceeeeecCCCCCcchHhHh--cccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCc
Confidence 999999999999999999999999999 7987 57999999999975310 159999999999999999
Q ss_pred eEEEccCccEEEEEecc-----------------------CCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCccccc
Q 000999 237 ALCVNANFTYVKVRNKY-----------------------TGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTK 293 (1193)
Q Consensus 237 al~V~p~~~Yv~v~~~~-----------------------~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1193)
||||||+++|+.++... +++.||||+++++.+.+. . .
T Consensus 236 AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~-~-------------------~ 295 (974)
T PLN02843 236 AVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAK-W-------------------G 295 (974)
T ss_pred EEEECCCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHh-h-------------------C
Confidence 99999999999998641 357899999999988651 0 0
Q ss_pred ccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEE-ecCccccCCCCCceeecCCCCh
Q 000999 294 VSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVI-ADNYVTSDSGTGIVHCAPAFGE 372 (1193)
Q Consensus 294 ~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi-~~~~V~~~~GTGiVh~aPahg~ 372 (1193)
.+|+++ ++++|++|+|++|.+|| .++.+||+ +++||++++|||+||+|||||+
T Consensus 296 -------------------~~~~~~-~~~~g~~L~g~~~~~P~------~~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~ 349 (974)
T PLN02843 296 -------------------VKLVVL-KTFPGSDLEGCRYIHPL------YNRESPVVIGGDYITTESGTGLVHTAPGHGQ 349 (974)
T ss_pred -------------------CceEEE-eeechHHcCCCEEECCC------CCCceeEEecCCccCCCCCCCeEEeCCCCCH
Confidence 128899 99999999999996443 25678997 5899999999999999999999
Q ss_pred hhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchh-hhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEE
Q 000999 373 DDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVK-DADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIY 451 (1193)
Q Consensus 373 ~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~-ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~ 451 (1193)
+||++|++||| +++++||++|+|++++|+|+|+.|+ |||+.|++.|+++|+|++.+++.|+|||||||++|||+
T Consensus 350 ~Dy~~~~~~~l-----~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~ 424 (974)
T PLN02843 350 EDYITGLKYGL-----PLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIF 424 (974)
T ss_pred HHHHHHHHcCC-----CcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEE
Confidence 99999999999 8999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred eeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEE----ecChH
Q 000999 452 RAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIV----VDSVD 527 (1193)
Q Consensus 452 ~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~----v~s~~ 527 (1193)
|+++||||+++++|+++++++++++|+|++. .+||.+||++++||||||||+||||||+|+|.+|++.+. ++++.
T Consensus 425 r~t~QWFi~~~~~k~~al~~~~~v~~~P~~~-~~r~~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~ 503 (974)
T PLN02843 425 RATEQWFASVEGFRQAALDAIDKVKWIPAQG-ENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVK 503 (974)
T ss_pred EecCceeEeCHHHHHHHHHHHhccEEEChHH-HHHHHHHHhcCcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHH
Confidence 9999999999999999999999999999984 689999999999999999999999999999988776542 33444
Q ss_pred HHHHhhCCcccccccCCCccccccCC--CCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecc
Q 000999 528 KLEKLSGEKIFDLHRHNIDHITIPSS--RGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGL 605 (1193)
Q Consensus 528 el~~l~g~~~~dlh~~~id~~~~~~~--~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~ 605 (1193)
++.+..|... .+....+++ +|+. ++. ..++|++||||||||||+++.+.... + ++.+||+|++++|+
T Consensus 504 ~~~~~~g~~~--w~~~~~~~l-~p~~~~~~~--~~~~k~~DvlDvWFdSg~~~~~~~~~----~--~~~~~PaDl~~eG~ 572 (974)
T PLN02843 504 SIVAQKGSDA--WWYMDVEDL-LPEKYRDKA--SDYEKGTDTMDVWFDSGSSWAGVLGS----R--EGLSYPADLYLEGS 572 (974)
T ss_pred HHHHhhCCcc--cccCCHHHh-CcccccCch--hhhEecccccccchhcCCChHHHhcc----c--cccCCCceeeeeec
Confidence 4544455431 111111111 2321 111 36999999999999999976543322 1 23469999999999
Q ss_pred cCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHh---------hcChhHHHHhHhhCCc
Q 000999 606 DQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN---------DYGADALRLYLINSPV 676 (1193)
Q Consensus 606 D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~---------~yGaDalR~yL~~~~~ 676 (1193)
||+||||+++++.++++++++||++|++|||++|++|+|||||+||+|+|.++|+ +||||+||||++++..
T Consensus 573 Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~~~ 652 (974)
T PLN02843 573 DQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVASVDY 652 (974)
T ss_pred cccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999 8999999999997655
Q ss_pred cccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 000999 677 VRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEM 756 (1193)
Q Consensus 677 ~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~ 756 (1193)
++|++|+.+.+.+. ++.+++|||+++|+..++..+ .|.... +......+|+||+++++.+++.+.++|
T Consensus 653 --~~d~~~s~~~l~~~-~~~~~kl~n~~rf~lgnl~~~--------~~~~~~-~~~~~~~~D~wiLskL~~li~~v~~ay 720 (974)
T PLN02843 653 --TGDVLIGPQILKQM-SDIYRKLRGTLRYLLGNLHDW--------KPDNAV-PYEDLPSIDKYALFQLENVVNEIEESY 720 (974)
T ss_pred --CCCceeCHHHHHHH-HHHHHHHHHHHHHHHhCccCC--------Cccccc-CccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999988765 778999999999998876532 221100 012345789999999999999999999
Q ss_pred hcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCC-ChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccC-
Q 000999 757 EGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRS-GEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVG- 833 (1193)
Q Consensus 757 e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~-~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~- 833 (1193)
++|+|++|++.+++|+ .++|||||+.+|+|++.+. ++..++++..+|+.+|..+++||||||||+||+||++|+...
T Consensus 721 e~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~ 800 (974)
T PLN02843 721 DNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQED 800 (974)
T ss_pred HccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcccccc
Confidence 9999999999999997 7899999999999998764 344566788899999999999999999999999999997421
Q ss_pred CCCCCCeeeccCCCCcCC-cc--HHHHHHH----HHHHHHHHHHHHHHHHcCCCCCCCcceeEEeCCChhhHHHHHhHH-
Q 000999 834 SGSEESIHFCSFPKEEGK-RD--ERIEQSV----LRMMTIIDLARNIRERHNKPLKSPLREMIVVHPDADFLDDIAGKL- 905 (1193)
Q Consensus 834 ~~~~~SVh~~~~P~~~~~-~D--~~le~~~----~~~~~vi~~~R~~R~~~~i~~k~pl~~~vv~~~~~~~~~~l~~~l- 905 (1193)
....+|||++.||++++. .| +.++..+ +....+..++|++|++.+|+.+...... +...+.+..+.++. +
T Consensus 801 ~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~l~~~r~~~~i~~~~~~~v~-l~~~~~~~~~~l~~-~~ 878 (974)
T PLN02843 801 GSAAESVFEAGWPTPNEEWLSFPAEDVDFWSLLLEVRDEVNKVLESARNGKLIGASLEAKVY-LHASDASLAARLAE-LC 878 (974)
T ss_pred CCCCCceEecCCCCCchhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccceeEE-EEeCCHHHHHHHHh-hc
Confidence 012469999999998766 44 4444434 4444577888889988888766665433 33344434444443 2
Q ss_pred -----HHHHHHhhcCcceeec
Q 000999 906 -----KEYVLEELNVRSLVPC 921 (1193)
Q Consensus 906 -----~~~i~~elNv~~v~~~ 921 (1193)
...|++.++|++|++.
T Consensus 879 ~~~~~~~~l~~l~~vs~v~~~ 899 (974)
T PLN02843 879 GASNGADELRRIFITSQVEVV 899 (974)
T ss_pred cccchHHHHHHHhccCceEee
Confidence 2568888999999885
No 14
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.8e-170 Score=1626.37 Aligned_cols=818 Identities=25% Similarity=0.418 Sum_probs=721.0
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
+.|||.++|++|+++|++.++|+.... +.++++|+|++||||+||.|||||++|+|++|+++||+||+||+|+|++|||
T Consensus 17 ~~y~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D 95 (1052)
T PRK14900 17 KGYEHREVEARWYPFWQERGYFHGDEH-DRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTD 95 (1052)
T ss_pred CCCCHHHHHHHHHHHHHHCCCccCCcc-cCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCC
Confidence 489999999999999999999998532 3578899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L 167 (1193)
|||||+|..++++++.....+..++|+++|+++|++|+++|.+.|++||++||+|+||+++|+||||.|+++|||+|.+|
T Consensus 96 ~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L 175 (1052)
T PRK14900 96 HAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRL 175 (1052)
T ss_pred ccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHH
Confidence 99999999999988765555667899999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceeeeceeccccCCCCCccCcccccccccc-cCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccE
Q 000999 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKD-VPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTY 246 (1193)
Q Consensus 168 ~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~-~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Y 246 (1193)
|++||||||.++|+|||.|+|+|||+|| +|++ ..+.++||+|++.+. + .+|+||||||||||||+||||||++++
T Consensus 176 ~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev--~~~e~~~~~~~~i~f~l~~~-~-~~l~vaTTrPeTl~~~~avaV~P~~~~ 251 (1052)
T PRK14900 176 HEEGLIYREKKLINWCPDCRTALSDLEV--EHEEAHQGELWSFAYPLADG-S-GEIVVATTRPETMLGDTAVAVHPLDPR 251 (1052)
T ss_pred HHCCCEEeccceeccCCCCCCCccHHHh--cccCCCCCeEEEEEEEecCC-C-cEEEEEECchhhhhcceeEEECCCcHH
Confidence 9999999999999999999999999999 6888 555677899999764 2 699999999999999999999999641
Q ss_pred EEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeeccc
Q 000999 247 VKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAY 326 (1193)
Q Consensus 247 v~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~ 326 (1193)
|+ +
T Consensus 252 --------------------------------------------------------------------y~---------~ 254 (1052)
T PRK14900 252 --------------------------------------------------------------------YM---------A 254 (1052)
T ss_pred --------------------------------------------------------------------HH---------H
Confidence 32 5
Q ss_pred ccccccc-cCcccccccCCceEEEEecC-ccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCC
Q 000999 327 LVGKKYE-PLFDYFKEFSDVAFRVIADN-YVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKI 404 (1193)
Q Consensus 327 L~G~~y~-Pl~~~~~~~~~~~~~vi~~~-~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~ 404 (1193)
|+|++|. |++ ++.+|||++. ||++++|||+||+|||||++||++|++||| +++++||++|+|++.+
T Consensus 255 L~G~~~~~Pl~-------~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L-----~~~~~id~~G~~~~~~ 322 (1052)
T PRK14900 255 LHGKKVRHPIT-------GRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGL-----EMITVIGPDGRMTAEA 322 (1052)
T ss_pred hcCCEEECCCC-------CCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCC-----CccceECCCcEEecCC
Confidence 7888885 653 6889999764 899999999999999999999999999999 9999999999999999
Q ss_pred CCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcC--Cccccchh
Q 000999 405 TDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQ--TYWVPDYV 482 (1193)
Q Consensus 405 ~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~--~~~~P~~~ 482 (1193)
|+|+|++++|||+.|+++|++.|++++.+.++|+|||||||++|||+++++||||+++++++++++++++ ++|+|++.
T Consensus 323 ~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~ 402 (1052)
T PRK14900 323 GPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQW 402 (1052)
T ss_pred cccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999964 99999986
Q ss_pred hhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCccccc
Q 000999 483 KEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLR 562 (1193)
Q Consensus 483 ~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~ 562 (1193)
.+++.+||++++|||||||||||||||+|+|+++. +++.... ...||. ||. ..++
T Consensus 403 -~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~~~-~~v~~~~--------------------~~~~~~-~~~--~~~~ 457 (1052)
T PRK14900 403 -TNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPDGH-VTVARET--------------------PEACST-CGK--AELR 457 (1052)
T ss_pred -HHHHHHHHhcCccceEEeecCCCceeCeEEcCCCc-EEecccc--------------------cccccc-cCc--ccee
Confidence 57999999999999999999999999999998753 3332110 012232 233 3699
Q ss_pred ccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCC
Q 000999 563 RIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDG 642 (1193)
Q Consensus 563 r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G 642 (1193)
|++||||||||||+|||++++||. +.+.|++|||+|++++|+||+||||++|+++++.+++..||++|++||||+|++|
T Consensus 458 ~~~dVlDvWFdS~l~y~s~~g~p~-~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G 536 (1052)
T PRK14900 458 QDEDVLDTWFSSGLWPFSTMGWPE-QTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKG 536 (1052)
T ss_pred cCCceEEEEEcCChHHHHHHcCCC-chHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCC
Confidence 999999999999999999999995 4567999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCC
Q 000999 643 KKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPF 722 (1193)
Q Consensus 643 ~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~ 722 (1193)
+|||||+||+|||.++|++||+|+|||||++.++ .++|++|+++.+.. .++++++|||+.||+..+...+.. .+.
T Consensus 537 ~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~-~g~D~~fs~~~l~~-~~~f~nkl~N~~R~~~~~~~~~~~---~~~ 611 (1052)
T PRK14900 537 QKMSKTKGNVIDPLVITEQYGADALRFTLAALTA-QGRDIKLAKERIEG-YRAFANKLWNASRFALMNLSGYQE---RGE 611 (1052)
T ss_pred CCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCC-CCCCCcccHHHHHH-HHHHHHHHHHHHHHHHHhhhccCc---ccc
Confidence 9999999999999999999999999999998654 57899999999965 478999999999999866542210 011
Q ss_pred CCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCCChHHHHHHHH
Q 000999 723 IPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRIALS 801 (1193)
Q Consensus 723 ~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~~~~~~~~a~~ 801 (1193)
.+. ....+..|+||+++++.+++.+.++|++|+|+.|++.+++|+ +++|||||+.+|+|++++. .+.+..++.
T Consensus 612 ~~~-----~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~~-~~~~~~~~~ 685 (1052)
T PRK14900 612 DPA-----RLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASED-PEARRSVQA 685 (1052)
T ss_pred ccc-----ccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHhhccCC-HHHHHHHHH
Confidence 111 013467899999999999999999999999999999999998 7999999999999998753 345567889
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHhhccCC--CCCCCeeeccCCCCcCCccHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 000999 802 TLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGS--GSEESIHFCSFPKEEGKRDERIEQSVLRMMTIIDLARNIRERHNK 879 (1193)
Q Consensus 802 tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~--~~~~SVh~~~~P~~~~~~D~~le~~~~~~~~vi~~~R~~R~~~~i 879 (1193)
+|+++|+.+++||+|||||+||+||++|+.... +..+|||++.||++++ +|++++..|+.++++++.+|++|++.++
T Consensus 686 ~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP~~~~-~d~~~e~~~~~v~~ii~~iR~~R~~~~i 764 (1052)
T PRK14900 686 VLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYPRKGE-ADEAAEAAFRPVLGIIDAVRNIRGEMGI 764 (1052)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCCCCCceeecCCCCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999974211 1136999999999876 7889999999999999999999999999
Q ss_pred CCCCCcc---eeEEeCCChhhHHHHHhHHHHHHHHhhcCcceeecCC----------------cceEEEEeeccChHHHh
Q 000999 880 PLKSPLR---EMIVVHPDADFLDDIAGKLKEYVLEELNVRSLVPCND----------------TLKYASLRAEPDFSVLG 940 (1193)
Q Consensus 880 ~~k~pl~---~~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~~~----------------~~~~~~~~~~~d~~~lg 940 (1193)
+.++||+ .++|...+++..+.++..+..+|+.++|+++|.+..+ .+.|+.+...+|+..+.
T Consensus 765 ~~~~~l~~~~~~~v~~~~~~~~~~l~~~~~~~i~~l~~~~~v~~~~~~~~~~~~~~~~~v~~~~ev~l~l~~~iD~~~e~ 844 (1052)
T PRK14900 765 PWKVKLGAQAPVEIAVADPALRDLLQAGELARVHRVAGVEGSRLVVAAATAPAPQSAVGVGPGFEVRVPLAGVIDLAAET 844 (1052)
T ss_pred CCCCccCCCCeEEEEcCCHHHHHHHHHHHHHHHHHhhCCCeeEeeccccccCcccceEEecCceEEEEECCcccCHHHHH
Confidence 9999995 5556566655544443215678999999999877421 13468888889999999
Q ss_pred hHHhhhHHHHHHHHHhc
Q 000999 941 KRLGRSMGVVAKEVKAM 957 (1193)
Q Consensus 941 ~rl~k~~~~v~~~l~~~ 957 (1193)
+|+.|+++++.+.+.++
T Consensus 845 ~rLekel~kl~Kel~kl 861 (1052)
T PRK14900 845 ARVDKEIGKVDQDLAVL 861 (1052)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999888888754
No 15
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.2e-169 Score=1610.33 Aligned_cols=806 Identities=28% Similarity=0.477 Sum_probs=720.2
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
+.|||+++|++|+++|+++++|++..+ ++++|+|++||||+||.||||||+|+|++|+++||+||+||+|+|++|||
T Consensus 7 ~~y~~~~~E~~~~~~W~~~~~f~~~~~---~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D 83 (874)
T PRK05729 7 KTYDPKEVEAKWYQKWEEKGYFKPDDN---SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTD 83 (874)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCcC---CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC
Confidence 489999999999999999999998643 34569999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L 167 (1193)
|||||+|.+++++++..+. ...++|+++|+++|++|+++|.+.|++|+++||+|+||+|.|+||||.|+++|+|+|.+|
T Consensus 84 ~~Gi~~e~~ve~~l~~~g~-~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 162 (874)
T PRK05729 84 HAGIATQMVVERQLAAEGK-SRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRL 162 (874)
T ss_pred ccchhhHHHHHHHHHhcCC-ChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999988754432 345799999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEE
Q 000999 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYV 247 (1193)
Q Consensus 168 ~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv 247 (1193)
|++||||||.++|+|||+|+|+|||+|| +|+++.++++||+|++.+. + .+|+||||||||||||+||||||+++
T Consensus 163 ~~~GlIyr~~~~v~wcp~~~talsd~EV--~~~~~~~~~~~i~f~~~~~-~-~~l~vaTtrPeTl~~~~avaV~P~d~-- 236 (874)
T PRK05729 163 YEKGLIYRGKRLVNWDPKLQTALSDLEV--EYKEVKGKLWHIRYPLADG-S-DYLVVATTRPETMLGDTAVAVNPEDE-- 236 (874)
T ss_pred HHCCCEeecCcccccCCCCCCcchhhhc--ccccccceEEEEEEEecCC-C-cEEEEEeCCcchhhcCeeEeECCCcc--
Confidence 9999999999999999999999999999 7999999999999999864 3 79999999999999999999999953
Q ss_pred EEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccc
Q 000999 248 KVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYL 327 (1193)
Q Consensus 248 ~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L 327 (1193)
+ |+ +|
T Consensus 237 ---------------------------------------------r---------------------y~---------~l 241 (874)
T PRK05729 237 ---------------------------------------------R---------------------YK---------HL 241 (874)
T ss_pred ---------------------------------------------H---------------------HH---------Hh
Confidence 1 32 57
Q ss_pred cccccc-cCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCC
Q 000999 328 VGKKYE-PLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITD 406 (1193)
Q Consensus 328 ~G~~y~-Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~ 406 (1193)
+|++|. |+. ++.+|||+++||++++|||+||++||||++||++|++||| ++++++|++|+|++.+|+
T Consensus 242 ~g~~~~~P~~-------~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l-----~~~~~i~~~G~~~~~~~~ 309 (874)
T PRK05729 242 IGKTVILPLV-------GREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNL-----PMINIMDEDGTINENPGE 309 (874)
T ss_pred cCCEEECCCC-------CCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCC-----CcccccCCCCeEcCCCcc
Confidence 888885 663 7899999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhc--CCccccchhhh
Q 000999 407 FSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNK--QTYWVPDYVKE 484 (1193)
Q Consensus 407 ~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~--~~~~~P~~~~~ 484 (1193)
|+||+++|||+.|+++|++.|++++.+++.|+||||||||+||++++++||||++++++++++++++ +++|+|++. .
T Consensus 310 ~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~-~ 388 (874)
T PRK05729 310 YQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERW-E 388 (874)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHH-H
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 689999986 4
Q ss_pred HhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCccccccc
Q 000999 485 KRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRI 564 (1193)
Q Consensus 485 ~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~ 564 (1193)
+++.+||+|++||||||||+||||||+|+|+++. ++|+..+ |+.+.. +.++|+
T Consensus 389 ~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~--~~v~~~~-----------------------~~~~~~--~~~~~~ 441 (874)
T PRK05729 389 KTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGE--VYVGREE-----------------------PEAREK--ALLTQD 441 (874)
T ss_pred HHHHHHHhcCccceeeeecccCCcccEEEeCCCc--EEeCCcc-----------------------cccccc--cCeEeC
Confidence 8999999999999999999999999999998743 5555421 111111 259999
Q ss_pred ccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCcc
Q 000999 565 EDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKK 644 (1193)
Q Consensus 565 ~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~K 644 (1193)
+||||||||||+|||++++||. +++.|+++||+|++++|+||+|||+++|+++|+.++++.||++|++||+|+|.+|+|
T Consensus 442 ~DvlDtWfsS~l~~~~~lgwp~-~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~K 520 (874)
T PRK05729 442 EDVLDTWFSSALWPFSTLGWPE-KTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRK 520 (874)
T ss_pred CceecceecCCccHHHHhCCCC-CcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCC
Confidence 9999999999999999999995 456799999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCC
Q 000999 645 MSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIP 724 (1193)
Q Consensus 645 MSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p 724 (1193)
||||+||+|+|.++|++||||+|||||++.+. .++|++|+++.+.+. ++++++|||++||+..++.... .+..+
T Consensus 521 MSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~-~~~Di~fs~~~l~~~-~~~~nkl~N~~Rf~~~~~~~~~----~~~~~ 594 (874)
T PRK05729 521 MSKSKGNVIDPLDLIDKYGADALRFTLAALAS-PGRDIRFDEERVEGY-RNFANKLWNASRFVLMNLEGAD----VGELP 594 (874)
T ss_pred cccCCCCCCCHHHHHHHhChHHHHHHHHhCCC-CCCCceeCHHHHHHH-HHHHHHHHHHHHHHHHhcccCC----ccccc
Confidence 99999999999999999999999999998654 578999999999765 7899999999999987543210 00001
Q ss_pred chhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCCChHHHHHHHHHH
Q 000999 725 LDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRIALSTL 803 (1193)
Q Consensus 725 ~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL 803 (1193)
. .......|+||+++++.+++.+.++|++|+|+.|++.+++|+ +++|||||+++|+|++ + +++++++.+|
T Consensus 595 ~-----~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~-~---~~~~~~~~~l 665 (874)
T PRK05729 595 D-----PEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ-E---AAKRATRATL 665 (874)
T ss_pred c-----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---hHHHHHHHHH
Confidence 0 113467899999999999999999999999999999999998 7999999999999987 2 2367889999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCCccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000999 804 YNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTIIDLARNIRERHNKPLKS 883 (1193)
Q Consensus 804 ~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~~D~~le~~~~~~~~vi~~~R~~R~~~~i~~k~ 883 (1193)
+++|+.+++||||||||+||+||++|+.. +..+|||+++||++++..|++++..|+.++++++.+|++|++.+++.++
T Consensus 666 ~~~l~~~~~lL~Pf~PfitEelw~~l~~~--~~~~si~~~~~P~~~~~~~~~~~~~~~~~~~ii~~ir~~r~~~~i~~~~ 743 (874)
T PRK05729 666 AYVLEQILRLLHPFMPFITEELWQKLAPL--GIEESIMLAPWPEADEAIDEAAEAEFEWLKELITAIRNIRAEMNIPPSK 743 (874)
T ss_pred HHHHHHHHHHHcccchhhHHHHHHhcccC--CCCCceeecCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999742 1235899999999865447889999999999999999999999999999
Q ss_pred CcceeEEeCCChhhHHHHHhHHHHHHHHhhcCcceeecC---------------CcceEEEEeeccChHHHhhHHhhhHH
Q 000999 884 PLREMIVVHPDADFLDDIAGKLKEYVLEELNVRSLVPCN---------------DTLKYASLRAEPDFSVLGKRLGRSMG 948 (1193)
Q Consensus 884 pl~~~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~~---------------~~~~~~~~~~~~d~~~lg~rl~k~~~ 948 (1193)
|+..+++ ..+++..+.++. +..+|+.++|+++|.+.. +.+.|+.+...+|+..+.+||.|+++
T Consensus 744 ~~~~~i~-~~~~~~~~~l~~-~~~~i~~l~~~~~v~~~~~~~~~~~~~~~~v~~~~~i~l~l~~~id~~~e~~rL~K~l~ 821 (874)
T PRK05729 744 KLPLLLK-GADAEDRARLEA-NEAYIKRLARLESLEILADDEEAPEGAASAVVGGAELFLPLEGLIDVEAELARLEKELA 821 (874)
T ss_pred eeeEEEE-eCCHHHHHHHHH-HHHHHHHHhCcCceEEecCCCcCCcCceEEEecCeEEEEECCCccCHHHHHHHHHHHHH
Confidence 9986554 445555566776 889999999999988732 11346788888999999999999999
Q ss_pred HHHHHHHhcC
Q 000999 949 VVAKEVKAMS 958 (1193)
Q Consensus 949 ~v~~~l~~~~ 958 (1193)
++++.|+++.
T Consensus 822 kl~~ei~~~~ 831 (874)
T PRK05729 822 KLEKEIERVE 831 (874)
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 16
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=8.3e-168 Score=1598.76 Aligned_cols=820 Identities=25% Similarity=0.412 Sum_probs=715.6
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
+.|||.. |++|+++|+++++|++..+ .++++|+|++|||||||.||||||+|+|++|+++||+||+||+|+|++|||
T Consensus 59 ~~y~~~~-E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D 135 (958)
T PLN02943 59 KSFDFTS-EERIYNWWESQGYFKPNFD--RGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTD 135 (958)
T ss_pred CCCChhh-hHHHHHHHHHCCCcccCcc--cCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCC
Confidence 4899988 9999999999999998654 467889999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L 167 (1193)
|||||+|.+++|+++..+.. ..++|+++|+++|++|+++|.+.|++|+++||+|+||++.|+||||.|+++|||+|++|
T Consensus 136 ~~Gl~~e~~vek~l~~~~~~-~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l 214 (958)
T PLN02943 136 HAGIATQLVVEKMLASEGIK-RTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRL 214 (958)
T ss_pred cccchhHHHHHHHHHHcCCC-hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999988433322 24699999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEE
Q 000999 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYV 247 (1193)
Q Consensus 168 ~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv 247 (1193)
|++||||||.++|+|||+|+|+|||+|| +|++..++++||+|++.+.++ .+|+||||||||||||+||||||+++
T Consensus 215 ~~~Gliyr~~~~V~wcp~~~Tals~~Ev--ey~e~~~~~~~i~f~l~~~~~-~~l~vaTTrPeTl~~~~avavnP~d~-- 289 (958)
T PLN02943 215 HEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGGSE-DFLTIATTRPETLFGDVAIAVNPEDD-- 289 (958)
T ss_pred HHCCCEEecCceeccCCCCCCCcCHHHh--hcccccccEEEEEEEEcCCCC-CEEEEEeCChhhhhcceEEEECCCCH--
Confidence 9999999999999999999999999999 799999999999999976533 68999999999999999999999975
Q ss_pred EEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccc
Q 000999 248 KVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYL 327 (1193)
Q Consensus 248 ~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L 327 (1193)
+ |. .|
T Consensus 290 ---------------------------------------------r---------------------y~---------~l 294 (958)
T PLN02943 290 ---------------------------------------------R---------------------YS---------KY 294 (958)
T ss_pred ---------------------------------------------H---------------------HH---------HH
Confidence 0 32 24
Q ss_pred cccccc-cCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCC
Q 000999 328 VGKKYE-PLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITD 406 (1193)
Q Consensus 328 ~G~~y~-Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~ 406 (1193)
+|+.|. |+. .++.+|||+++||++++|||+||+|||||++||++|++||| ++++++|++|+|++.
T Consensus 295 ~g~~~~~Pl~------~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L-----~~~~~id~~G~~~~~--- 360 (958)
T PLN02943 295 IGKMAIVPMT------YGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGL-----PILNVMNKDGTLNEV--- 360 (958)
T ss_pred cCCEEECCCc------CCCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCC-----CceeeeCCCceeecc---
Confidence 666774 662 16899999999999999999999999999999999999999 999999999999875
Q ss_pred CCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhc--CCccccchhhh
Q 000999 407 FSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNK--QTYWVPDYVKE 484 (1193)
Q Consensus 407 ~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~--~~~~~P~~~~~ 484 (1193)
.|++|+|||+.|+++|+++|+|++.++++|+||+|||||+|+++++++||||++++++++++++++ +++|+|++. .
T Consensus 361 -~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~-~ 438 (958)
T PLN02943 361 -AGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERF-E 438 (958)
T ss_pred -CCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHH-H
Confidence 466799999999999999999999999999999999999999999999999999999999999975 599999986 5
Q ss_pred HhHHhhhhcCCceeeccccCCCCcccEEEc--CCCCE-EEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccc
Q 000999 485 KRFHNWLENARDWAVSRSRFWGTPLPVWTS--EDGEE-IIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLL 561 (1193)
Q Consensus 485 ~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~--~~~~~-~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~ 561 (1193)
+++.+||+|++|||||||||||||||+|+| .+|++ +++..+..+.....+ + .+|.. ..+
T Consensus 439 ~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~----------------~-~~g~~-~~~ 500 (958)
T PLN02943 439 KIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAR----------------E-KYGKD-VEI 500 (958)
T ss_pred HHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHHhh----------------h-hcCCc-hhe
Confidence 899999999999999999999999999998 45664 444455444322111 1 12320 258
Q ss_pred cccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccC
Q 000999 562 RRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAED 641 (1193)
Q Consensus 562 ~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~ 641 (1193)
+|++||||||||||+|||++++||..++++|+++||+|++++|+||+||||++|+++|+.++++.||++|++||+++|.+
T Consensus 501 ~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~ 580 (958)
T PLN02943 501 YQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQ 580 (958)
T ss_pred eecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEeccEECCC
Confidence 89999999999999999999999976667899999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhh-----
Q 000999 642 GKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEI----- 716 (1193)
Q Consensus 642 G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~----- 716 (1193)
|+|||||+||+|+|.+++++||+|++||||++++. ++|++|+++.+.+ .++++++|||+++|+.+++.....
T Consensus 581 G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~--~~d~~fs~~~l~~-~~~~~~kl~N~~rf~~~~l~~~~~~~~~~ 657 (958)
T PLN02943 581 GRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTA--GQDLNLSTERLTS-NKAFTNKLWNAGKFVLQNLPSQSDTSAWE 657 (958)
T ss_pred CCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCC--CCCccccHHHHHH-HHHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999999999999999999999998654 7899999999987 488999999999999876531100
Q ss_pred -hcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCCChH
Q 000999 717 -EGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGED 794 (1193)
Q Consensus 717 -~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~~~~ 794 (1193)
.....+.+... .......|+||+++++.+++.++++|++|+|+.|++.+++|+ +++|||||+.+|+|++.+++..
T Consensus 658 ~~~~~~~~~~~~---~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~~ 734 (958)
T PLN02943 658 HILACKFDKEES---LLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNS 734 (958)
T ss_pred ccccccCCcccc---ccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCchH
Confidence 00001221110 113567899999999999999999999999999999999997 8999999999999998765445
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCCccHHHHHHHHHHHHHHHHHHHHH
Q 000999 795 DCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTIIDLARNIR 874 (1193)
Q Consensus 795 ~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~~D~~le~~~~~~~~vi~~~R~~R 874 (1193)
.+.+++.+|++++..+++||+|||||+||+||++|+. ..+|||.+.||+++...|+++++.|+.+++++..+|++|
T Consensus 735 ~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~----~~~si~~~~wP~~~~~~d~~~~~~~~~v~~ii~~iR~~r 810 (958)
T PLN02943 735 ALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPY----RKEALIVSPWPQTSLPKDLKSIKRFENLQSLTRAIRNAR 810 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCC----CCCceeecCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999973 346999999999863378889999999999999999999
Q ss_pred HHcCCCCCCCcceeEEeCCChhhHHHHHhHHHHHHHHhhcCc--ceeec----------------CCcceEEEEeeccCh
Q 000999 875 ERHNKPLKSPLREMIVVHPDADFLDDIAGKLKEYVLEELNVR--SLVPC----------------NDTLKYASLRAEPDF 936 (1193)
Q Consensus 875 ~~~~i~~k~pl~~~vv~~~~~~~~~~l~~~l~~~i~~elNv~--~v~~~----------------~~~~~~~~~~~~~d~ 936 (1193)
++.+++.+.++..++ ...+ +..+.+.. ...+|+.++|++ ++.+. .+.+.|+.+...+|+
T Consensus 811 ~~~~i~~~~~~~~~i-~~~~-~~~~~~~~-~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~iD~ 887 (958)
T PLN02943 811 AEYSVEPAKRISASI-VASA-EVIEYISK-EKEVLALLSRLDLQNVHFTDSPPGDANQSVHLVASEGLEAYLPLADMVDI 887 (958)
T ss_pred HHcCCCCCCcccEEE-ecCh-hHHHHHHH-HHHHHHHHhcCcccccccccCCCccccceeEEEecCceEEEEeccccccH
Confidence 999999999998654 3333 33455666 778888888764 44431 122346888888999
Q ss_pred HHHhhHHhhhHHHHHHHHHhcC
Q 000999 937 SVLGKRLGRSMGVVAKEVKAMS 958 (1193)
Q Consensus 937 ~~lg~rl~k~~~~v~~~l~~~~ 958 (1193)
+++.+||.|+++++++.|+++.
T Consensus 888 ~~E~~rL~K~l~klekei~~~~ 909 (958)
T PLN02943 888 SAEVERLSKRLSKMQTEYDALA 909 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987643
No 17
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.2e-162 Score=1539.49 Aligned_cols=782 Identities=29% Similarity=0.498 Sum_probs=702.7
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCcc
Q 000999 1 MEEVSEGKDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHV 80 (1193)
Q Consensus 1 ~~~~~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V 80 (1193)
|..++. .|||+++|++|+++|+++++|++..+ .++++|+|++|||||||.||+||+++++++|+++||+||+||+|
T Consensus 3 ~~~~~~--~~~~~~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v 78 (800)
T PRK13208 3 MPELPK--KYDPEELEEKWQKIWEEEGTYKFDPD--ERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNV 78 (800)
T ss_pred CCCCCC--CCCHHHHHHHHHHHHHHCCCcccccc--cCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcc
Confidence 445555 89999999999999999999998654 35789999999999999999999999999999999999999999
Q ss_pred ceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHH
Q 000999 81 TRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESV 160 (1193)
Q Consensus 81 ~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v 160 (1193)
++++||||||||||.+++|++|+++++ +|+++|++.|++|+++|.+.|++++++||+|+||+++|+||||.|+++|
T Consensus 79 ~~~~G~D~~Glpie~~~ek~~g~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v 154 (800)
T PRK13208 79 FFPQGWDDNGLPTERKVEKYYGIRKDD----ISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRIS 154 (800)
T ss_pred cCCCCcCCCcchHHHHHHHHhCCCccc----CCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHH
Confidence 999999999999999999988998754 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEE
Q 000999 161 WWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCV 240 (1193)
Q Consensus 161 ~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V 240 (1193)
||+|.+|+++||||+|.++|+|||+|+|+|||+|| +|++..++++||+|++.++ .+|+||||||||||||+||||
T Consensus 155 ~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev--~~~~~~~~~~~ikf~~~~~---~~l~v~TtrPeTl~g~~ai~v 229 (800)
T PRK13208 155 QKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEV--EYREREGKLNYIKFPVEDG---EEIEIATTRPELLPACVAVVV 229 (800)
T ss_pred HHHHHHHHHCCCeeecCcccccCCCCCCccchhhh--ccccccceEEEEEEEecCC---CEEEEEeCCcchhhhCeEEEE
Confidence 99999999999999999999999999999999999 6899999999999999752 699999999999999999999
Q ss_pred ccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeee
Q 000999 241 NANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGE 320 (1193)
Q Consensus 241 ~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 320 (1193)
||+++. |+
T Consensus 230 ~p~~~~--------------------------------------------------------------------~~---- 237 (800)
T PRK13208 230 HPDDER--------------------------------------------------------------------YK---- 237 (800)
T ss_pred CCCchH--------------------------------------------------------------------HH----
Confidence 999531 21
Q ss_pred eeeccccccccc-ccCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCc
Q 000999 321 VFSGAYLVGKKY-EPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGC 399 (1193)
Q Consensus 321 ~~~G~~L~G~~y-~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~ 399 (1193)
+|+|++| +|++ ++.+|||+++||++++|||+||++|+||++||++|++||| ++++++|++|+
T Consensus 238 -----~l~g~~~~~P~~-------~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l-----~~~~~i~~~G~ 300 (800)
T PRK13208 238 -----HLVGKTAIVPLF-------GVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNL-----PTRIIIDEDGR 300 (800)
T ss_pred -----HhcCCEEEcCCC-------CCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCC-----CcccccCCCce
Confidence 4677777 5774 6789999999999999999999999999999999999999 99999999999
Q ss_pred cccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCcccc
Q 000999 400 FTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVP 479 (1193)
Q Consensus 400 ~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P 479 (1193)
|++++|+|+|++++|||+.|++.|+++|++++.+++.|+||+|||||+||++++++||||+++++++++++++++++|+|
T Consensus 301 ~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~~~P 380 (800)
T PRK13208 301 MTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINWYP 380 (800)
T ss_pred EecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhHHhhhhcCC-ceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHhhCCcccccccCCCccc---cccCCCC
Q 000999 480 DYVKEKRFHNWLENAR-DWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHI---TIPSSRG 555 (1193)
Q Consensus 480 ~~~~~~r~~~wl~~l~-DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~---~~~~~~g 555 (1193)
++.+ +++.+||++++ ||||||||+||||||+|+|++|+++++. +.+++ .|.++.|.. +++. +|
T Consensus 381 ~~~~-~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~-~~~~l----------~~~~~~d~~~~~~~~~-~g 447 (800)
T PRK13208 381 EHMR-VRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILP-DEEDL----------PVDPTKDEPPGYKCPQ-CG 447 (800)
T ss_pred HHHH-HHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecC-chhhh----------ccCchhhccccccccc-cC
Confidence 9865 79999999988 9999999999999999999999877642 21111 033333332 2222 23
Q ss_pred CCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEe
Q 000999 556 PEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNG 635 (1193)
Q Consensus 556 ~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG 635 (1193)
. +.++|++||||||||||++|+++.+||. +++.|++|||+|++++|+||+||||+++++.+++++++.||++|++||
T Consensus 448 ~--~~~~~~~dvlD~WfdS~~~~~~~~~~~~-~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg 524 (800)
T PRK13208 448 S--PGFEGETDVMDTWATSSITPLIVTGWER-DEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISG 524 (800)
T ss_pred C--cCEEecCCEEEEEEeCCchHHHHhCCCC-ChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEee
Confidence 3 3699999999999999999999999996 456799999999999999999999999999999999999999999999
Q ss_pred eEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 000999 636 LVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLE 715 (1193)
Q Consensus 636 ~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~ 715 (1193)
++++.+|+|||||+||+|+|.+++++||+|++||||++++ .++|++|+++.+.. .++++++|||+++|+.....
T Consensus 525 ~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~--~~~d~~fs~~~~~~-~~~~l~kl~N~~r~~~~~~~--- 598 (800)
T PRK13208 525 MVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASAR--LGSDTPFDEKQVKI-GRRLLTKLWNASRFVLHFSA--- 598 (800)
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCC--CCCCceecHHHHHH-HHHHHHHHHHHHHHHHhccc---
Confidence 9999999999999999999999999999999999999544 37899999999976 58899999999998763211
Q ss_pred hhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCCChH
Q 000999 716 IEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGED 794 (1193)
Q Consensus 716 ~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~~~~ 794 (1193)
.....+ ......+|+||+++++.+++.+.++|++|+|++|++.+++|+ +++||||++++|+|++.+...+
T Consensus 599 ---~~~~~~------~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~ 669 (800)
T PRK13208 599 ---DPEPDK------AEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEE 669 (800)
T ss_pred ---ccccCc------cccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCcH
Confidence 001100 113467899999999999999999999999999999999999 5699999999999988754434
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHH
Q 000999 795 DCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNI 873 (1193)
Q Consensus 795 ~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~ 873 (1193)
.+.+++.+++++|+.+++||+|||||+||+||++|+ .+|||++.||++++. .+++++..|+.++++++.+|++
T Consensus 670 ~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~------~~si~~~~wP~~~~~~~~~~~~~~~~~v~~ii~~iR~~ 743 (800)
T PRK13208 670 EQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY------GGSVHRASWPEPDEELIDEEDEELGELAKEILSAVRKY 743 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC------CCceEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999996 259999999999877 8899999999999999999999
Q ss_pred HHHcCCCCCCCcceeEEeCCChhhHHHHHhHHHHHHHHhhcCcceeecCCc
Q 000999 874 RERHNKPLKSPLREMIVVHPDADFLDDIAGKLKEYVLEELNVRSLVPCNDT 924 (1193)
Q Consensus 874 R~~~~i~~k~pl~~~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~~~~ 924 (1193)
|++.++++++|+..+++.. +.+ .+.++. +.+.|++++||++|.+..+.
T Consensus 744 r~~~~i~~~~~l~~~~~~~-~~~-~~~~~~-~~~~l~~~~~~~~v~~~~~~ 791 (800)
T PRK13208 744 KSEAGLSLNAPLKKVEVYG-PAD-LELLEA-AEEDLKAAGNIEELELVEGD 791 (800)
T ss_pred HHHcCCCcCCccceEEEec-chH-HHHHHH-HHHHHHHHhCcCeEEEecCC
Confidence 9999999999998776643 344 777777 88999999999999997553
No 18
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-155 Score=1360.27 Aligned_cols=828 Identities=25% Similarity=0.427 Sum_probs=722.4
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
+.|++..+|..|+.+|++.+.|++... ....+.|.++.||||+||.||+|||++.+|+|+++||+||+||+|+|.||+|
T Consensus 44 ~~y~p~~vE~~wy~ww~k~g~fkp~~~-~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~D 122 (995)
T KOG0432|consen 44 AAYSPAYVESAWYKWWEKQGFFKPEYG-PNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTD 122 (995)
T ss_pred ccCCccchHHHHHHHHHHcCCCCcccC-CCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCcc
Confidence 479999999999999999999998654 3457889999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L 167 (1193)
|+|+.++..|||++.........++|+++|+++|++|..+|...+.+|+++||.+.||+|.++|||+...++|-.+|.+|
T Consensus 123 HAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL 202 (995)
T KOG0432|consen 123 HAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRL 202 (995)
T ss_pred ccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHH
Confidence 99999999999988666545556799999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceeeeceeccccCCCCCccCcccccccccccCCC----------------eEEEEeeecCCCCcceEEEeecCCCc
Q 000999 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDP----------------EIMVSFPIVGDPEKAAFVAWTTTPWT 231 (1193)
Q Consensus 168 ~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~----------------~~~v~f~l~~~~~~~~l~vwTTtPwT 231 (1193)
|++|+|||+.+.|||||...|+|||.|| +|++++.+ .+-++|++.+.+ ..++|+||||||
T Consensus 203 ~eeglIyR~~rlVNW~~~L~saiSdiEV--e~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~--~~i~VaTTRpET 278 (995)
T KOG0432|consen 203 HEEGLIYRANRLVNWCPALRSAISDIEV--ESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSD--EEIVVATTRPET 278 (995)
T ss_pred HhcCceEecCceeeechhHHhhhhhhee--cceecCCCceEecCCCCcceeeeeeeEEEEeccCCC--CeEEEecCCccc
Confidence 9999999999999999999999999999 77887743 455788888764 489999999999
Q ss_pred cCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccc
Q 000999 232 LPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAEN 311 (1193)
Q Consensus 232 l~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 311 (1193)
|+|++||||||+++ +
T Consensus 279 ~lGDvAvAVhP~D~-----------------------------------------------R------------------ 293 (995)
T KOG0432|consen 279 ILGDVAVAVHPDDD-----------------------------------------------R------------------ 293 (995)
T ss_pred cccceeEEeCCCCc-----------------------------------------------c------------------
Confidence 99999999999964 1
Q ss_pred cccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcc
Q 000999 312 NESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLI 391 (1193)
Q Consensus 312 ~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~ 391 (1193)
|+.+ +|+.++ +|+ .++.+|||.|.+|++++|||+|+++|||+++||+++++||| +++
T Consensus 294 ---Yk~l----hGk~~~----hP~-------~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L-----~~~ 350 (995)
T KOG0432|consen 294 ---YKHL----HGKFVK----HPF-------TGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNL-----EFI 350 (995)
T ss_pred ---cccc----cCceee----cCC-------CCCccceeecccccccccccceEecCCCChhHHHHHHhcCC-----Cce
Confidence 4322 333221 465 47999999999999999999999999999999999999999 999
Q ss_pred eeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHh
Q 000999 392 VAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDN 471 (1193)
Q Consensus 392 ~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~ 471 (1193)
++++++|.+++.+|+|+||++++||++|++.|++.|+++....+.+..|.|.|||..++|.+.||||++++++..+++++
T Consensus 351 ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~a 430 (995)
T KOG0432|consen 351 NIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKA 430 (995)
T ss_pred eEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc--CCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcC------CCCEEEEecChHHHHHhhCCcccccccC
Q 000999 472 NK--QTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSE------DGEEIIVVDSVDKLEKLSGEKIFDLHRH 543 (1193)
Q Consensus 472 ~~--~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~------~~~~~~~v~s~~el~~l~g~~~~dlh~~ 543 (1193)
++ ++.++|+.. ++.+..|++|++|||||||.||||+||+|+.. +.+..++--+.+|..+.+...
T Consensus 431 v~sG~L~i~P~~~-~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k------- 502 (995)
T KOG0432|consen 431 VESGKLEILPEFH-EKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEK------- 502 (995)
T ss_pred HhcCCeEECchHH-HHHHHHHHhhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHH-------
Confidence 88 688999985 58899999999999999999999999999863 133445555666655444221
Q ss_pred CCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHcc
Q 000999 544 NIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALF 623 (1193)
Q Consensus 544 ~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~ 623 (1193)
+. .|.+ -++.|++|||||||+||++||+.+|||. ..++|..+||.+++-+|+||++||+++|+|+|+.++
T Consensus 503 ------~g--~~~~-~~L~qDpDVLDTWFSS~L~PfS~lGWP~-~t~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLt 572 (995)
T KOG0432|consen 503 ------FG--PGKE-FTLEQDPDVLDTWFSSGLWPFSTLGWPE-ETKDFKNFYPLSLLETGHDILFFWVARMVMLGLKLT 572 (995)
T ss_pred ------hC--Cccc-ceeecCccHHHhhhhcccccchhcCCcc-ccccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhc
Confidence 00 1111 2689999999999999999999999995 567899999999999999999999999999999999
Q ss_pred CCCCccEEEEEeeEEccCCccccccCCCCCChhhhHh-------------------------------------hcChhH
Q 000999 624 GKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-------------------------------------DYGADA 666 (1193)
Q Consensus 624 ~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-------------------------------------~yGaDa 666 (1193)
|+.||+.|++||+|.|.+|||||||+||||||.|+|+ +.|+||
T Consensus 573 G~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDA 652 (995)
T KOG0432|consen 573 GELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDA 652 (995)
T ss_pred CCCCchheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHH
Confidence 9999999999999999999999999999999999997 349999
Q ss_pred HHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHH
Q 000999 667 LRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQ 746 (1193)
Q Consensus 667 lR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~ 746 (1193)
|||.|++... .+.|++++-..+.+. +.|+|||||+.+|+.+++ +.+|.|.....+..+...+|+||+++|+
T Consensus 653 LRFaL~s~~~-~~~dInLDv~rv~g~-r~FcNKlWNa~rF~l~~l-------g~~~~p~~~~~~~~~~~~~d~WIlsrL~ 723 (995)
T KOG0432|consen 653 LRFALCSYTT-QGRDINLDVLRVEGY-RHFCNKLWNATRFALQRL-------GENFVPSPTEDLSGNESLVDEWILSRLA 723 (995)
T ss_pred HHHHHHHccc-cCccccccHHHHhhH-HHHHHHHHHHHHHHHHhc-------ccCCCCCcccccCCCcchhHHHHHHHHH
Confidence 9999998765 688999999999874 899999999999999873 3456665443222222339999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 000999 747 SLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEAL 825 (1193)
Q Consensus 747 ~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei 825 (1193)
..++.+.+.|+.|+|+.|+.+++.|+ .+||+.|++.+|+-++++. ......|..+|+.||...++||||||||+||+|
T Consensus 724 ~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~-~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel 802 (995)
T KOG0432|consen 724 EAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDS-EALAYEARRVLYRCLDNGLRLLHPFMPFITEEL 802 (995)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc-HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence 99999999999999999999999998 8999999999999998754 456778899999999999999999999999999
Q ss_pred HHHhhccCCCCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceeEEeCCChhhHHHHHhH
Q 000999 826 YQNMRKVGSGSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVHPDADFLDDIAGK 904 (1193)
Q Consensus 826 ~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~R~~~~i~~k~pl~~~vv~~~~~~~~~~l~~~ 904 (1193)
||+|++..+....|+..++||..... .|+++|..|+.+++++..+|++|+.++++.+... .+.+..++++....++.
T Consensus 803 ~qrlP~r~~~~~~si~va~yP~~~~~~~~~e~E~~~~~v~~i~~~iRslra~y~l~~~~~~-~v~~~~s~~~~~~~~~~- 880 (995)
T KOG0432|consen 803 WQRLPRRKGSKPASISVSPYPSSNELWRNEELESAFELVLAITRAIRSLRAEYNLSPKPRG-SVFIASSDEEDKSILKE- 880 (995)
T ss_pred HHhcccCCCCCCCceEecCCCchhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCce-EEEEecCCCcchhHHHH-
Confidence 99998653333459999999965555 8999999999999999999999999999873333 34444444433333455
Q ss_pred HHHHHHHhhcCcceeecCC----------------cceEEEEeeccChHHHhhHHhhhHHHHHHHHHhcC
Q 000999 905 LKEYVLEELNVRSLVPCND----------------TLKYASLRAEPDFSVLGKRLGRSMGVVAKEVKAMS 958 (1193)
Q Consensus 905 l~~~i~~elNv~~v~~~~~----------------~~~~~~~~~~~d~~~lg~rl~k~~~~v~~~l~~~~ 958 (1193)
+.+.|....|+..|.+... ...|+.+++.+|....-++|.|.+.++++.+.++.
T Consensus 881 ~~~~i~~l~~~~~v~i~~~~~~~~~g~~~~~~~~~~~v~l~l~g~vd~~~e~~kl~kkl~klqk~~~~l~ 950 (995)
T KOG0432|consen 881 FLDEISTLTNLELVSISSPAEEDAQGCALSVASSDCQVYLPLKGLVDPDSEIQKLAKKLEKLQKQLDKLQ 950 (995)
T ss_pred HHHHHHHhhccceeEeccCCccccCcceEeccCCceEEEEEeccCcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888887532 24578899999999998999888888888877654
No 19
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-149 Score=1427.15 Aligned_cols=777 Identities=24% Similarity=0.357 Sum_probs=663.3
Q ss_pred cchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhh----cC-----HHHHHHHHHHHH
Q 000999 55 PHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQ----MG-----IDKYNEACRSIV 125 (1193)
Q Consensus 55 lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~----~g-----~~~f~~~c~~~~ 125 (1193)
||+||++++|++|+++||+||+||+|+|++||||||||||..+++ ++...+..+.. +| +++| ..|++|+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~-~~~~~~~~~~~~~~~~gi~~~~i~~f-~~~~~~~ 78 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAER-IARGDPETIELYKSLYGIPEEELEKF-KDPEYIV 78 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHH-hhccchhHHHHHHHHcCCCHHHHHHh-cCHHHHH
Confidence 799999999999999999999999999999999999999999875 33222111110 12 3566 3489999
Q ss_pred HHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccccccccccCCC
Q 000999 126 TRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDP 205 (1193)
Q Consensus 126 ~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~ 205 (1193)
++|...|++++++||+|+||+|+|.||||.|+++|||+|++|+++||||||.++|+|||+|+|+|||||+..+ +..++
T Consensus 79 ~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~--e~~~~ 156 (897)
T PRK12300 79 EYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDG--EEPEI 156 (897)
T ss_pred HHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcC--CCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999644 44466
Q ss_pred e--EEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCC
Q 000999 206 E--IMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGG 283 (1193)
Q Consensus 206 ~--~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~ 283 (1193)
+ ++|+|+ . +. +.+|+||||||||||||+||||||+++|+.++. +|+.||+|+++++.+...
T Consensus 157 ~~~~~ikf~-~-~~-~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~--~~e~~i~a~~~~~~~~~~------------ 219 (897)
T PRK12300 157 VEYTLIKFE-E-SE-DLILPAATLRPETIFGVTNLWVNPDATYVKAEV--DGEKWIVSKEAAEKLSFQ------------ 219 (897)
T ss_pred ceEEEEEEe-C-CC-ceEEEEEECCcchhccceEEEECCCCcEEEEEE--CCEEEEEeHHHHHHHhcC------------
Confidence 6 589998 2 22 379999999999999999999999999999985 589999999999887441
Q ss_pred CCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCCCCc
Q 000999 284 DSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGI 363 (1193)
Q Consensus 284 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGi 363 (1193)
. ++++++ ++++|++|+|++|.+|+ .++.+||++++||++++|||+
T Consensus 220 -------~---------------------~~~~~~-~~~~G~~l~G~~~~~Pl------~~~~ipil~~~~V~~~~GTGv 264 (897)
T PRK12300 220 -------D---------------------RDVEII-EEIKGSELIGKKVKNPV------TGKEVPILPADFVDPDNGTGV 264 (897)
T ss_pred -------c---------------------CCceEE-EEeehHHhcCCEEECCC------CCCeEEEeccCeeecCCCeee
Confidence 0 128888 99999999999997555 367899999999999999999
Q ss_pred eeecCCCChhhHHHHHHcCCCccC----CCc--c---------------------eeec---------------CCCccc
Q 000999 364 VHCAPAFGEDDYRVCIENQIINKG----ENL--I---------------------VAVD---------------DDGCFT 401 (1193)
Q Consensus 364 Vh~aPahg~~D~~~~~~~~l~~~~----~~~--~---------------------~~vd---------------~~G~~~ 401 (1193)
||+|||||++||++|+++|. ... .++ + +++| .+|+|+
T Consensus 265 V~~~Pah~~~Dy~~~~~~~~-~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~ 343 (897)
T PRK12300 265 VMSVPAHAPYDYVALRDLKK-NKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLK 343 (897)
T ss_pred EEeCCCCCHHHHHHHHHhcc-ccccccccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEe
Confidence 99999999999999999983 000 022 1 2335 589999
Q ss_pred cCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeee-CccccccH--HHHHHHHHhhcCCccc
Q 000999 402 GKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAV-PSWFVRVE--TLKEKLLDNNKQTYWV 478 (1193)
Q Consensus 402 ~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~-~qWFi~~~--~~k~~ll~~~~~~~~~ 478 (1193)
+.+|+|+|++|+|||+.|++.|+++|++++.+++.| +|+|||||+|||++++ +||||+++ ++|+++++++++++|+
T Consensus 344 ~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~-~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~~~~~ 422 (897)
T PRK12300 344 ENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSN-RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDNMEII 422 (897)
T ss_pred ecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCC-CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHccCEEE
Confidence 999999999999999999999999999999999988 6888899999999975 99999997 8999999999999999
Q ss_pred cchhhhHhHHhhhhcCCceeeccccCCCCcccE---EEcCCCCE-EE--EecChHHHHHhhCCcccccccCCCccccccC
Q 000999 479 PDYVKEKRFHNWLENARDWAVSRSRFWGTPLPV---WTSEDGEE-II--VVDSVDKLEKLSGEKIFDLHRHNIDHITIPS 552 (1193)
Q Consensus 479 P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPi---w~~~~~~~-~~--~v~s~~el~~l~g~~~~dlh~~~id~~~~~~ 552 (1193)
|++++ ++|.+||+|++||||||||+||||||+ |.|++++. .+ +++++++..+-.|.+..++|++++|.+.+.+
T Consensus 423 P~~~~-~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i~~~l~~~g~~~~~l~~~~~D~~~~~~ 501 (897)
T PRK12300 423 PEEYR-KEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKIREYGIKPEQLTPEFFDYVFLGK 501 (897)
T ss_pred CHHHH-HHHHHHHhhhhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHHHHHHHHcCCChHHCChhhCceEEeCC
Confidence 99975 899999999999999999999999996 88876432 23 2445554333356667889999999876421
Q ss_pred CCCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCc-cEE
Q 000999 553 SRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAF-RNL 631 (1193)
Q Consensus 553 ~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pf-k~v 631 (1193)
.+.+|+|++|| +|+++++ +++++|++|||+|++++|+||+|||...+++.+++++++.|| ++|
T Consensus 502 ------------~~~~~~~~~sg-~p~~~~~---~~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v 565 (897)
T PRK12300 502 ------------GDPEEVSKKTG-IPKEILE---EMREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGI 565 (897)
T ss_pred ------------CccccCchhcC-CCHHHHH---HHHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEE
Confidence 24678899999 6888877 346789999999999999999999765557779999999999 999
Q ss_pred EEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHH
Q 000999 632 ICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNA 711 (1193)
Q Consensus 632 ~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~ 711 (1193)
++||||++ +|+|||||+||+|+|.++|++||||++||||+++++ .++|.+|+++.+.+. .++++++||+++++....
T Consensus 566 ~~hG~vl~-~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~-~~~D~~fs~~~v~~~-~~~l~r~~~~~~~~~~~~ 642 (897)
T PRK12300 566 VVNGFVLL-EGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAE-LLQDADWREKEVESV-RRQLERFYELAKELIEIG 642 (897)
T ss_pred EEcceEEE-CCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCC-CCCCCccCHHHHHHH-HHHHHHHHHHHHHHhcCC
Confidence 99999998 899999999999999999999999999999998655 478999999999876 667899999877654211
Q ss_pred HHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 000999 712 KRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRS 791 (1193)
Q Consensus 712 ~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~ 791 (1193)
+. ...+.+|+|++++++++++.++++|++|+|++|++.++.|+.+.+|||++++++
T Consensus 643 ------------~~------~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~k~------ 698 (897)
T PRK12300 643 ------------GE------EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRVGE------ 698 (897)
T ss_pred ------------Cc------cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 10 124578999999999999999999999999999999987774457999997664
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHH
Q 000999 792 GEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLA 870 (1193)
Q Consensus 792 ~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~ 870 (1193)
.++.+|+++|+.+++||+|||||+||+||++|+. .+|||++.||++++. +|++++..|+.++++++.+
T Consensus 699 ------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~-----~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~i 767 (897)
T PRK12300 699 ------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGG-----EGFVSLEKWPEPDESKIDEEAELAEEYVKRLIEDI 767 (897)
T ss_pred ------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC-----CCeEEeCCCCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999963 479999999999888 8999999999999999999
Q ss_pred HHHHHHcCCCCCCCcceeEEeCCChhhHHHHHhHHHHHHHHhhcCcceeecCCcceEEEEeeccChHHHhhHHhhhHHHH
Q 000999 871 RNIRERHNKPLKSPLREMIVVHPDADFLDDIAGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMGVV 950 (1193)
Q Consensus 871 R~~R~~~~i~~k~pl~~~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~~~~~~~~~~~~~~d~~~lg~rl~k~~~~v 950 (1193)
|++|+..++++ +.++|+..++... . ..++|++++|++++.. .+..+||++.+|+++++.++++
T Consensus 768 r~~~~~~~~~~----~~~~i~~~~~~~~----~-~~~~~~~~~n~k~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 830 (897)
T PRK12300 768 REILKVAKIKP----KKVYIYVAPDWKY----E-VLEIAAENGDVKEAIK--------ELMKDEELRKHGKEVAKLAQKI 830 (897)
T ss_pred HHHHHHcCCCC----ceEEEEECCHHHH----H-HHHHHHHhhcHHHHHH--------HHhccchHHHHHHHHHHHHHHH
Confidence 99999998865 3566655554433 2 4577888999998875 3467899999999999999999
Q ss_pred HHHHHhcCHHH
Q 000999 951 AKEVKAMSQED 961 (1193)
Q Consensus 951 ~~~l~~~~~~~ 961 (1193)
.+++++++...
T Consensus 831 ~~~~~~~~~~~ 841 (897)
T PRK12300 831 VKEVLKLDKEV 841 (897)
T ss_pred HHHHHhcChhh
Confidence 99998766543
No 20
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.4e-148 Score=1431.28 Aligned_cols=774 Identities=18% Similarity=0.259 Sum_probs=636.3
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCC--CCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTR--CQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~--~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
+++++.++|++||++|+++++|++..+.++ ++++|++++||||+||.||+||++|+|++|+++||+||+||+|+|+||
T Consensus 11 ~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G 90 (1084)
T PLN02959 11 RRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFA 90 (1084)
T ss_pred hhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 579999999999999999999999865332 458899999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHH------cCCCCc------------------chhhhcCHHHHHHHHHHHHHHHH------------
Q 000999 86 WDCHGLPVENEIDKT------LGIKRR------------------DDVFQMGIDKYNEACRSIVTRYV------------ 129 (1193)
Q Consensus 86 ~D~hGlpie~~v~k~------lg~~~~------------------~~~~~~g~~~f~~~c~~~~~~~~------------ 129 (1193)
|||||||||..|+|. +|+.+. ....+.++++|++.|++++.++.
T Consensus 91 ~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~ 170 (1084)
T PLN02959 91 FHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSF 170 (1084)
T ss_pred cCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhc
Confidence 999999999998873 354320 11234677899999999986622
Q ss_pred ---------------------HHHHHHHHHhCCcccccCccccCC--hhHHHHHHHHHHHHHHcCceeeeceeccccCCC
Q 000999 130 ---------------------EEWEQIITRTGRWIDFRNDYKTMD--LKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGC 186 (1193)
Q Consensus 130 ---------------------~~~~~~~~~lG~~iD~~~~y~T~d--~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~ 186 (1193)
..++++|++||+|+||+|+|.||| |.|.++|+|+|.+|+++||||+|.|||+|||+|
T Consensus 171 ~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~ 250 (1084)
T PLN02959 171 GLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLD 250 (1084)
T ss_pred CCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCC
Confidence 556899999999999999999999 999999999999999999999999999999999
Q ss_pred CCccCcccccccccccCCCeEE--EEeeecCC---------CCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCC
Q 000999 187 KTPLSNFEAGQNYKDVPDPEIM--VSFPIVGD---------PEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTG 255 (1193)
Q Consensus 187 ~T~Ls~~Ev~~~y~~~~~~~~~--v~f~l~~~---------~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~ 255 (1193)
+|+|||||+ +|.+...|+.| |+|++.+. .++.+|+||||||||||||+|+||||+++|+.++.. +|
T Consensus 251 ~t~ladhe~--~~~e~~~~~~y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~-~~ 327 (1084)
T PLN02959 251 GQPCADHDR--ASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEIN-DT 327 (1084)
T ss_pred CCCchhhHH--hcCCCCCcceeEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEec-CC
Confidence 999999999 45566677766 67887532 123799999999999999999999999999999864 57
Q ss_pred eEEEEehhhhhcc-CCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccc-
Q 000999 256 KIYVVAESRLSAL-PSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYE- 333 (1193)
Q Consensus 256 ~~~i~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~- 333 (1193)
+.||||+.++..+ ++.. . ...++++++ .+++|++|+|++|.
T Consensus 328 e~~i~s~~~~~~~~~q~~-------------------~-----------------~~~~~~~~l-~~~~G~~L~G~~~~~ 370 (1084)
T PLN02959 328 EVFILTARAALNLAYQNF-------------------S-----------------KVPGKPTCL-VELTGYDLIGLPLKS 370 (1084)
T ss_pred eEEEEehhhhhhhHHhhh-------------------c-----------------ccCCCcEEE-EEEEHHHhCCCEEEC
Confidence 9999999988865 4310 0 001238899 99999999999996
Q ss_pred cCcccccccCCce-EEEEecCccccCCCCCceeecCCCChhhHHH----------HHHcCCCcc---CCCcceeecCCCc
Q 000999 334 PLFDYFKEFSDVA-FRVIADNYVTSDSGTGIVHCAPAFGEDDYRV----------CIENQIINK---GENLIVAVDDDGC 399 (1193)
Q Consensus 334 Pl~~~~~~~~~~~-~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~----------~~~~~l~~~---~~~~~~~vd~~G~ 399 (1193)
|+. +.. +||+++.||++++||||||+|||||++||.+ |++|||..+ +.+++++||.+|.
T Consensus 371 Pl~-------~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~ 443 (1084)
T PLN02959 371 PLA-------FNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEF 443 (1084)
T ss_pred CCC-------CCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCC
Confidence 553 444 8999999999999999999999999999998 677887321 1245677787764
Q ss_pred ----------------------------------cccC---CCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcc
Q 000999 400 ----------------------------------FTGK---ITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFC 442 (1193)
Q Consensus 400 ----------------------------------~~~~---~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c 442 (1193)
|++. +|+|+|++|+|||+.|+++|+++|+++...+. ..|+|
T Consensus 444 G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep--~~pv~ 521 (1084)
T PLN02959 444 GDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEP--EKKVM 521 (1084)
T ss_pred CcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEc--CCCeE
Confidence 5555 68999999999999999999999988753322 25899
Q ss_pred cCCCCCeEEeeeCccccccH--HHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEc----CC
Q 000999 443 WRSDTPLIYRAVPSWFVRVE--TLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTS----ED 516 (1193)
Q Consensus 443 ~R~~~pli~~~~~qWFi~~~--~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~----~~ 516 (1193)
||||+||++++++||||+++ +||+++++++++++|+|++.+ ++|.+||+|++||||||||+|||||| |.| ++
T Consensus 522 ~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~~P~~~~-~~~~~wl~~l~DWciSRQr~wGtpIP-Wd~~~~ies 599 (1084)
T PLN02959 522 SRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDETR-HGFEHTLGWLNQWACSRSFGLGTRIP-WDEQFLIES 599 (1084)
T ss_pred ECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEEECHHHH-HHHHHHHhCCCceeecccccCCCcCC-cccceeecc
Confidence 99999999999999999997 799999999999999999975 68999999999999999999999999 642 22
Q ss_pred ---CCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCC----h
Q 000999 517 ---GEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFEN----A 589 (1193)
Q Consensus 517 ---~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~----~ 589 (1193)
+..+....+++++.+.......+. ..+ ..-..++||||+||+||+||+++ +||.+. +
T Consensus 600 lsdstiy~a~yti~~~~~~~~~~g~~~--~~i-------------~~~~~~~dV~D~wF~Sg~~p~~t-~~p~~~l~~~r 663 (1084)
T PLN02959 600 LSDSTIYMAYYTVAHLLQGGDMYGKDK--SSI-------------KPEQMTDEVWDFVFCGGPLPKSS-DIPAELLEKMK 663 (1084)
T ss_pred CCCCceeechhhHHHHHhhhhccCCcc--ccC-------------ChhhcCccceeEeecCCCccccc-CCCHHHHhhhh
Confidence 222223355666544321100000 001 11123789999999999999998 888643 5
Q ss_pred hhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCc-cEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHH
Q 000999 590 EHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAF-RNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALR 668 (1193)
Q Consensus 590 ~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR 668 (1193)
++|++|||+|++++|+||+|+||+++++.+++++++.|| +++++||||+ .+|+|||||+||+|+|.++|++||||++|
T Consensus 664 ~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G~KMSKSkGNvI~p~diI~kyGADalR 742 (1084)
T PLN02959 664 QEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LNSEKMSKSTGNFLTLRQAIEEFSADATR 742 (1084)
T ss_pred HHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cCCcCccccCCCcCCHHHHHHHhCchHHH
Confidence 679999999999999999999999999999999999999 6899999999 79999999999999999999999999999
Q ss_pred HhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHH
Q 000999 669 LYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSL 748 (1193)
Q Consensus 669 ~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~l 748 (1193)
|||+++++ ..+|.+|+++.+.. ...+++|.++|+..++.. ...+.+ ......+|+||+++++.+
T Consensus 743 l~la~~~~-~~~D~nF~~k~~n~----~~~~l~n~~~~~~~~~~~-----~~~~~~------~~~~~~~D~wils~l~~~ 806 (1084)
T PLN02959 743 FALADAGD-GVDDANFVFETANA----AILRLTKEIAWMEEVLAA-----ESSLRT------GPPSTYADRVFENEINIA 806 (1084)
T ss_pred HHHhhcCC-ccCCCCccHHHHHH----HHHHHHHHHHHHHHhhhh-----hcccCC------cccCCHHHHHHHHHHHHH
Confidence 99998755 56899999886654 345577877776554321 001111 012467899999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHH-HHhhhc--cccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Q 000999 749 VHFVRQEMEGYRLYTVVPYLLKFLDNLTNIY-VRFNRK--RLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEAL 825 (1193)
Q Consensus 749 i~~v~~~~e~y~~~~a~~~l~~fi~~lsnwY-i~~~r~--rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei 825 (1193)
++.++++|++|+|+.|++.. || ++..|+ |++++.. ..+..+|+++|..+++||||||||+||+|
T Consensus 807 i~~v~~a~e~y~f~~A~~~~---------~Yel~~~k~~yr~~~~~~----~~~~~~L~~vl~~~l~LLaP~~PfiaEEi 873 (1084)
T PLN02959 807 IAETEKNYEAMMFREALKSG---------FYDLQAARDEYRLSCGSG----GMNRDLVWRFMDVQTRLITPICPHYAEHV 873 (1084)
T ss_pred HHHHHHHHHcccHHHHHHHH---------HHHHHHhHHHHhhccccc----hHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999953 45 555555 5555321 14567999999999999999999999999
Q ss_pred HHHhhccCCCCCCCeeeccCCCCcCCccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000999 826 YQNMRKVGSGSEESIHFCSFPKEEGKRDERIEQSVLRMMTIIDLARNIRERHNKPLKS 883 (1193)
Q Consensus 826 ~~~L~~~~~~~~~SVh~~~~P~~~~~~D~~le~~~~~~~~vi~~~R~~R~~~~i~~k~ 883 (1193)
|++|.. ..+|||++.||+++. +|++++..++.+++++..+|++|.....+.+.
T Consensus 874 W~~l~~----~~~sI~~~~wP~~~~-~d~~~e~~~~~l~~~i~~iR~~~~~~~~~~~~ 926 (1084)
T PLN02959 874 WREILK----KEGFAVTAGWPVAGE-PDLTLKRANKYLQDSIVSFRKLLQKQLAGSKK 926 (1084)
T ss_pred HHhccC----CCCeEEecCCCCCCc-cCHHHHHHHHHHHHHHHHHHHhHHHhchhhhh
Confidence 999942 246999999999763 58889999999999999999999865544333
No 21
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=5e-149 Score=1375.01 Aligned_cols=598 Identities=43% Similarity=0.800 Sum_probs=525.5
Q ss_pred HHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHH
Q 000999 18 KILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEI 97 (1193)
Q Consensus 18 ~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v 97 (1193)
||+++|+++++|+++.+.++++++|+|++|||||||.||+||++|+|++|+++||+||+||+|++++||||||||||..|
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 79999999999999877677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeec
Q 000999 98 DKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGF 177 (1193)
Q Consensus 98 ~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~ 177 (1193)
+|++|++.++++.++|+++|+++|++|+.++.+.|++||++||+|+||+++|.||||.|+++++|+|.+|+++||||||.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeE
Q 000999 178 KVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKI 257 (1193)
Q Consensus 178 ~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~ 257 (1193)
++|+|||+|+|+|||+|+ +|+++.++++||+|++.+..+ .+|+||||||||||||+||||||+.+|+ .+++.
T Consensus 161 ~pv~w~p~~~t~lsd~Ev--~~~~~~~~~~~v~f~~~~~~~-~~l~i~TtrPeTl~~~~ai~vnP~~~Y~-----~~~~~ 232 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEV--EYKEVKSPSIYVKFPLKDGEE-VYLVIWTTRPETLPGNTAIAVNPDFDYV-----INGER 232 (601)
T ss_dssp EEEEEETTTTEEE-GGGE--EEEEEEEEEEEEEEEESSSSE-EEEEEEES-GGGGGG-BEEEE-TTSEEE-----ETTEE
T ss_pred CCCCcCcccccchhhhhc--ccccccCceEEEEEEecCccc-eEEEEEechhhHHhCCeeEEECCCccce-----eCCee
Confidence 999999999999999999 899999999999999987654 7999999999999999999999999999 47899
Q ss_pred EEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcc
Q 000999 258 YVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFD 337 (1193)
Q Consensus 258 ~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~ 337 (1193)
||+|+++++++.... + .. + ++++|++|+|++|.+++
T Consensus 233 ~i~~~~~~~~~~~~~--------------------~---------------------~~-~-~~~~g~~L~g~~~~~P~- 268 (601)
T PF00133_consen 233 YIVAKDLVEKLSKQE--------------------K---------------------TK-L-EDFRGKELVGLKYIHPL- 268 (601)
T ss_dssp EEEEHHHHHHHHTTT--------------------S---------------------SS-E-EEEECHHHTTSEEE-TT-
T ss_pred ehHHHHHHHHHHhhh--------------------h---------------------hc-c-cccCcceecCcEecccc-
Confidence 999999999986621 1 11 5 89999999999996443
Q ss_pred cccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhH
Q 000999 338 YFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADK 417 (1193)
Q Consensus 338 ~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~ 417 (1193)
.++.+|||+++||++++|||+||+|||||++||++|++|++ +++++||++|+|++++++|+|++|+|||+
T Consensus 269 -----~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l-----~~~~~id~~G~~~~~~~~~~G~~v~~ar~ 338 (601)
T PF00133_consen 269 -----TGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNL-----PIINPIDEDGRFTEEAGKFKGMKVFEARE 338 (601)
T ss_dssp -----SSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHH-----CCGCCCCCTSTBBSCCSTTTTSBHHHHHH
T ss_pred -----ccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCc-----eeeEecCCCceEeecccccCCceeeeccH
Confidence 36889999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhhhcCCce
Q 000999 418 DIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDW 497 (1193)
Q Consensus 418 ~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW 497 (1193)
.|++.|+++|+|++.+++.|+||||||||+||++++++||||+++++|+++++++++++|+|+.. .++|.+||++++||
T Consensus 339 ~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~~-~~~~~~~i~~l~DW 417 (601)
T PF00133_consen 339 KIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFYPESY-RKRFENWIDNLRDW 417 (601)
T ss_dssp HHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEESSSTC-HHHHHHHHHT--EE
T ss_pred HHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceEEcccc-hhhhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999985 58999999999999
Q ss_pred eeccccCCCCcccEEEcCCCCEEEEecChHHHHHhhCCc---ccccccCCCccccccCCCCCCcccccccccceeeeccC
Q 000999 498 AVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLSGEK---IFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFES 574 (1193)
Q Consensus 498 ~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~g~~---~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdS 574 (1193)
||||||+||||||+|+|++|+...+..+..++....-.. ...+|++..|.+ + +++ +.++|++||||+||||
T Consensus 418 cISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~--~~~~~~~dvlD~WfdS 491 (601)
T PF00133_consen 418 CISRQRYWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKL--P--CCG--GELRRDTDVLDTWFDS 491 (601)
T ss_dssp E-EESSSSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHH--T--TTS--SEEEEHS-EE-HHHHH
T ss_pred hhhccCCCCccceeeecccCcccccccccccccccccccccccccccccccccc--c--ccc--cceEEeeeeccccccc
Confidence 999999999999999999998877655544443211111 234566665555 2 222 4899999999999999
Q ss_pred CCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCC
Q 000999 575 GSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPS 654 (1193)
Q Consensus 575 g~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~ 654 (1193)
|++|+++++||.+++++|++|||+|++++|+||+||||+++++.+++++++.||++|++||||+|++|+|||||+||+|+
T Consensus 492 g~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~ 571 (601)
T PF00133_consen 492 GLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVID 571 (601)
T ss_dssp CTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--B
T ss_pred cCCcccccccccccchhccccCCcccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCcccC
Confidence 99999999999887899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhcChhHHHHhHhhCCcccccccccc
Q 000999 655 PVEVINDYGADALRLYLINSPVVRAETLRFK 685 (1193)
Q Consensus 655 P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs 685 (1193)
|.++|++||||++|||+++++. .++|++||
T Consensus 572 p~~ii~~yGaD~lRl~~~~~~~-~~~D~~~s 601 (601)
T PF00133_consen 572 PEDIIEKYGADALRLWLASSAD-PGQDINFS 601 (601)
T ss_dssp HHHHHHHT-HHHHHHHHHHHS--TTS-EEE-
T ss_pred HHHHHHHhCcHHHHHHHHhcCC-cccCcccC
Confidence 9999999999999999995433 37899986
No 22
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.4e-143 Score=1377.43 Aligned_cols=763 Identities=22% Similarity=0.323 Sum_probs=636.4
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHH
Q 000999 14 REEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPV 93 (1193)
Q Consensus 14 ~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpi 93 (1193)
++|++||++|+++++|++..+ ++++|+|++||||+||.||+||++|+|++|+++||+||+||+|+|++||||||+||
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~---~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi 78 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD---DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPI 78 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC---CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCch
Confidence 589999999999999998643 57899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-----CCCCcchhhhcCHHHHHHHH--HHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHH
Q 000999 94 ENEIDKTL-----GIKRRDDVFQMGIDKYNEAC--RSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQ 166 (1193)
Q Consensus 94 e~~v~k~l-----g~~~~~~~~~~g~~~f~~~c--~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~ 166 (1193)
|..++|.. +++.-.....++.++|.+.| ++|+++|...+++++++||+|+||+|.|.||||.|.++|||+|.+
T Consensus 79 ~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~ 158 (938)
T TIGR00395 79 LGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNK 158 (938)
T ss_pred HHHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHH
Confidence 99998732 22111123457889999998 999999999999999999999999999999999999999999999
Q ss_pred HHHcCceeeeceeccccCCCCCccCcccccccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccE
Q 000999 167 LYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTY 246 (1193)
Q Consensus 167 L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Y 246 (1193)
|+++||||+|.++|+|||+|+|+|||||+..++....+..++|+|++.+. + .+|+||||||||||||+||||||+++|
T Consensus 159 L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~-~-~~l~~aTtRPETl~g~tav~V~P~~~Y 236 (938)
T TIGR00395 159 LKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDG-A-FYFVAATLRPETVYGVTNCWVNPTITY 236 (938)
T ss_pred HHHCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCC-c-eEEEEeeCCcchhhcceeEEECCCCcE
Confidence 99999999999999999999999999999765544556789999998653 2 689999999999999999999999999
Q ss_pred EEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeeccc
Q 000999 247 VKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAY 326 (1193)
Q Consensus 247 v~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~ 326 (1193)
+.++. +++.||+++.++.++..+ .. +++++ ++++|++
T Consensus 237 ~~~~~--~~e~~i~s~~~~~~~~~q-------------------~~---------------------~~~~~-~~~~g~~ 273 (938)
T TIGR00395 237 VIAEV--GGEKWITSKEAFENLSYQ-------------------KL---------------------KYKPI-EEVPGKQ 273 (938)
T ss_pred EEEEe--CCcEEEEeHHHHHhhhhc-------------------cc---------------------ceeEE-EEEchHh
Confidence 99985 479999999999887541 01 17888 9999999
Q ss_pred ccccccccCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHc-------CCCc--cCCCcce--eec
Q 000999 327 LVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIEN-------QIIN--KGENLIV--AVD 395 (1193)
Q Consensus 327 L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~-------~l~~--~~~~~~~--~vd 395 (1193)
|+|++|.+|+ .++.+||++++||++++|||+||++||||++||.+++++ |+.. .+.++++ .+|
T Consensus 274 l~G~~~~~P~------~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~ 347 (938)
T TIGR00395 274 FIGKKVHNPV------VGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTD 347 (938)
T ss_pred ccCCEEECCC------CCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccceecC
Confidence 9999996334 368999999999999999999999999999999999874 3310 0112232 233
Q ss_pred C-------------------------------------CCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeecccccc
Q 000999 396 D-------------------------------------DGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHS 438 (1193)
Q Consensus 396 ~-------------------------------------~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~ 438 (1193)
. +|+|++.+|+|+|++|+|||+.|+++|+++|.+++.+++.|
T Consensus 348 ~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~~~L~~~g~~~~~~~~~~- 426 (938)
T TIGR00395 348 GYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKADLIDAGLADVMYEFSE- 426 (938)
T ss_pred CCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHHHHHHHCCCceEeeecCC-
Confidence 2 46667778899999999999999999999999999888754
Q ss_pred CCcccCCCCCeEEe-eeCccccccH--HHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccE---E
Q 000999 439 YPFCWRSDTPLIYR-AVPSWFVRVE--TLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPV---W 512 (1193)
Q Consensus 439 yp~c~R~~~pli~~-~~~qWFi~~~--~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPi---w 512 (1193)
+|+|||||+||+++ +++||||+++ ++|+++++++++++|+|+..+ ++|.+||+|++||||||||+||||||+ |
T Consensus 427 ~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~-~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~ 505 (938)
T TIGR00395 427 SPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVK-NAFEGKIDWLKDWACCRRYGLGTRLPWDEKW 505 (938)
T ss_pred CCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHH-HHHHHHHhhhhhcccccccccCcccceeecE
Confidence 58899999999998 9999999999 699999999999999999975 799999999999999999999999996 5
Q ss_pred EcCCC-CEEEEe--cChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCC--
Q 000999 513 TSEDG-EEIIVV--DSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFE-- 587 (1193)
Q Consensus 513 ~~~~~-~~~~~v--~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~-- 587 (1193)
+++.. +..+|+ ++++++....+. +.-...++++|+||.++..+ ...++|.+
T Consensus 506 ~ieslsdstiY~~~~~i~~~l~~~~~-----------------------~~~~l~~ev~D~~~~~~~~~-~~t~~~~~~~ 561 (938)
T TIGR00395 506 LIESLSDSTIYMAYYTIAHYLNKDYY-----------------------GNEQMTDEFFDYIFLGKGDV-KNTNIPLPAI 561 (938)
T ss_pred EeeecchhhhhhhhccHHHHhhccCC-----------------------ChHHCCcccCceEEECCCCh-hhcCCCHHHH
Confidence 55532 122332 223222111100 11123678999999865444 34466642
Q ss_pred --ChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCc-cEEEEEeeEEccCCccccccCCCCCChhhhHhhcCh
Q 000999 588 --NAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAF-RNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGA 664 (1193)
Q Consensus 588 --~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGa 664 (1193)
.+++|++|||+|++++|+||+|+|....++++.++++..|| +++++|||+++ +|+|||||+||+|+|.+++++|||
T Consensus 562 ~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~~yGa 640 (938)
T TIGR00395 562 QKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVEKFGA 640 (938)
T ss_pred HHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEe-CCccccCcCCCCCCHHHHHHHcCh
Confidence 24679999999999999999999977778888999998888 99999999997 899999999999999999999999
Q ss_pred hHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHH
Q 000999 665 DALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSA 744 (1193)
Q Consensus 665 DalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~ 744 (1193)
|++||||++++. .++|++|+++.+.+. .+.+.++||.++++..... +... ...+..|+||+++
T Consensus 641 DalRl~Ll~~~~-~~~D~~fs~~~~~~~-~~~l~~l~n~~~~~~~~~~-----------~~~~----~~~~~~D~wlls~ 703 (938)
T TIGR00395 641 DVARLYIADAAE-TVQDADWKESEVEGT-ILRLERLYEFAEEITKESN-----------LETG----EETSFIDRWLESR 703 (938)
T ss_pred HHHHHHHHhcCC-CCCCCCcCHHHHHHH-HHHHHHHHHHHHHHHhhcc-----------cCCC----ccCChHHHHHHHH
Confidence 999999998755 578999999999876 4557778886655432210 0000 1235689999999
Q ss_pred HHHHHHHHHHHHhcCChhHHH-HHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 000999 745 TQSLVHFVRQEMEGYRLYTVV-PYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTE 823 (1193)
Q Consensus 745 l~~li~~v~~~~e~y~~~~a~-~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaE 823 (1193)
++.+++.++++|++|+|+.|+ ..+++|+++ +|||++..+.+ ...+|+++|+.+++||+|||||+||
T Consensus 704 l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~-~n~Yl~~~~~~------------~~~~l~~~l~~~~~LLaP~~P~~aE 770 (938)
T TIGR00395 704 MNAAIKETYEAMENFQTRKAVKYALFDLQAD-VDWYRRRGGVN------------HKDVLARYLETWIKLLAPFAPHFAE 770 (938)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHhCcch------------HHHHHHHHHHHHHHHhcCcccHHHH
Confidence 999999999999999999999 678899875 89998854322 1237999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCeeeccCCCCcCC-ccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceeEEeCCChh
Q 000999 824 ALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERIEQSVLRMMTIIDLARNIRERHNKPLKSPLREMIVVHPDAD 896 (1193)
Q Consensus 824 ei~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~le~~~~~~~~vi~~~R~~R~~~~i~~k~pl~~~vv~~~~~~ 896 (1193)
+||+.|+. .+|||++.||++++. +|++++..++.++++++.+|+ ..+++.++|++.. |...++.
T Consensus 771 eiw~~Lg~-----~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~iR~---~~~~~~~~p~~~~-i~~~~~w 835 (938)
T TIGR00395 771 EMWEEVGN-----EGFVSLAKFPEASEPAVDKEVEAAEEYLRNLVRDIQE---IAKIDASKPKRVY-LYTSEDW 835 (938)
T ss_pred HHHHHcCC-----CCeEEecCCCCCCcccCCHHHHHHHHHHHHHHHHHHH---hhccCCCCCcEEE-EEECcHH
Confidence 99999963 479999999999887 899999999999988765555 5789999998644 4444443
No 23
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-140 Score=1209.37 Aligned_cols=750 Identities=28% Similarity=0.492 Sum_probs=645.2
Q ss_pred CCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccch
Q 000999 9 DFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDC 88 (1193)
Q Consensus 9 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~ 88 (1193)
++|....++++.+-|....++...++ ..+++.|++.| +||.||||||+|++++||+.||+.++|++|+++|||||
T Consensus 29 ~~Ns~gr~~q~~evi~~~~~~~~qls-~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDc 103 (937)
T KOG0433|consen 29 HFNSTGRIGQVIEVIQPPEILSSQLS-DQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDC 103 (937)
T ss_pred ccccccchHHHHHHhCChHHHHHHHh-hccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCc
Confidence 57777889999999999998887665 35688999999 99999999999999999999999999999999999999
Q ss_pred hhHHHH-HHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHH
Q 000999 89 HGLPVE-NEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167 (1193)
Q Consensus 89 hGlpie-~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L 167 (1193)
||||+| .++.+.+.-+. ..+..-+.++.++.+|++-++++++.|+|+|++.||.++|.||||+|......+|.+|
T Consensus 104 hGLPiEs~kalssl~~~~----~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~l 179 (937)
T KOG0433|consen 104 HGLPIESTKALSSLTESE----GSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKL 179 (937)
T ss_pred CCCchHHHHHhhhhhhcc----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHH
Confidence 999999 57766544332 1233445677899999999999999999999999999999999999999999999999
Q ss_pred HHcCceeeeceeccccCCCCCccCccccccccccc-CCCeEEEEeeecCCCC----------cceEEEeecCCCccCCCc
Q 000999 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDV-PDPEIMVSFPIVGDPE----------KAAFVAWTTTPWTLPSNL 236 (1193)
Q Consensus 168 ~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~-~~~~~~v~f~l~~~~~----------~~~l~vwTTtPwTl~~n~ 236 (1193)
++||||||+.+||+|||+..|||++.|. ||-+. .++|+||+|||.+... ..|.+||||||||||+|.
T Consensus 180 yekgLvyR~~KPVyWSpSSRTALAEaEL--EYn~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~ 257 (937)
T KOG0433|consen 180 YEKGLVYRSFKPVYWSPSSRTALAESEL--EYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNN 257 (937)
T ss_pred HhccceeccCCcceecCcchhhhhhhhc--cCCcCCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccc
Confidence 9999999999999999999999996666 77654 6899999999975421 279999999999999999
Q ss_pred eEEEccCccEEEEEec--cCCeEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhccccccc
Q 000999 237 ALCVNANFTYVKVRNK--YTGKIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNES 314 (1193)
Q Consensus 237 al~V~p~~~Yv~v~~~--~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 314 (1193)
|||+||+..|+.++.. ..++.|+||..+++.+-.. ...+
T Consensus 258 Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~------------------~~~k--------------------- 298 (937)
T KOG0433|consen 258 AISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKS------------------SDRK--------------------- 298 (937)
T ss_pred eeeeccccceEEEEeccCCcceEEEEccchhhhhhhh------------------cCcc---------------------
Confidence 9999999999999864 3468999999998877331 1112
Q ss_pred ceEeeeeeecccccccccc-cCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCccee
Q 000999 315 YEKLGEVFSGAYLVGKKYE-PLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVA 393 (1193)
Q Consensus 315 ~~i~~~~~~G~~L~G~~y~-Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~ 393 (1193)
++++ ++++|.+|.|.+|. |+. .+...|++.++|||++.|||+||+|||||++||.++.++|| ++.||
T Consensus 299 ~~i~-~t~~g~~L~~~~Y~~pl~------~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l-----~~~s~ 366 (937)
T KOG0433|consen 299 CKIV-GTVKGANLIGRRYKHPLH------NELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGL-----RVESF 366 (937)
T ss_pred eeee-eecchhhccCceecCcCc------cccCCccccccceecCcccceeecCCCCChHHHHHHhhcCC-----Ccccc
Confidence 7787 99999999999995 764 36789999999999999999999999999999999999999 99999
Q ss_pred ecCCCccccCCC-CCCCcchh-hhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHh
Q 000999 394 VDDDGCFTGKIT-DFSGRYVK-DADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDN 471 (1193)
Q Consensus 394 vd~~G~~~~~~~-~~~G~~v~-ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~ 471 (1193)
||++|+||.++| .+.|+.|. |..+.|+..|. ..+++.++++|+||+.||++.|+|.|+++|||++++++|..+.++
T Consensus 367 VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~a 444 (937)
T KOG0433|consen 367 VDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMA 444 (937)
T ss_pred cCCCCceecccccccccchhhccccHhHHHHHh--hhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHH
Confidence 999999999998 79999998 78899999999 789999999999999999999999999999999999999999999
Q ss_pred hcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEE----ecChHHHHHhhCCc------ccccc
Q 000999 472 NKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIV----VDSVDKLEKLSGEK------IFDLH 541 (1193)
Q Consensus 472 ~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~----v~s~~el~~l~g~~------~~dlh 541 (1193)
+++++|+|... ..|+..++..+.+|||||||.||+|||+.|...++.++. ++.+.++.+.-|.+ +.+++
T Consensus 445 l~~Vk~~P~~~-~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eell 523 (937)
T KOG0433|consen 445 LDDVKVAPGDS-DLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELL 523 (937)
T ss_pred HhhceeCCcch-HHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhC
Confidence 99999999875 469999999999999999999999999999887765542 22233444445554 12222
Q ss_pred cCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHH
Q 000999 542 RHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTA 621 (1193)
Q Consensus 542 ~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~ 621 (1193)
.+..=. .+| .....+.|.+|+||+|||||+..-+..+. +.-.++|++.||.||.||||++++..+++
T Consensus 524 pe~~~~-e~~----~~a~ey~kgtDimDVWFDSGssWs~v~~~--------~~~~~aDv~LEG~DQ~rGWFQSsLLTsvA 590 (937)
T KOG0433|consen 524 PEEEVR-EIP----DIASEYKKGTDIMDVWFDSGSSWSAVLDN--------EREHVADVYLEGVDQFRGWFQSSLLTSVA 590 (937)
T ss_pred cHhhhc-ccc----hhHHHhccCCceeeeEecCCCcceeecCC--------CCCcceeeEEecchhcchHHHHHHHHHHH
Confidence 211100 011 11136889999999999999854333321 23468999999999999999999999999
Q ss_pred ccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhh------cChhHHHHhHhhCCccccccccccHhHHHHHHHh
Q 000999 622 LFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIND------YGADALRLYLINSPVVRAETLRFKKDGVFAVVKD 695 (1193)
Q Consensus 622 l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~------yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~ 695 (1193)
..+++||+.|++|||++|++|.|||||+||||+|..+++. ||||+||||++.+.. ..|+......+.++ .+
T Consensus 591 ~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~~~--t~d~~iGp~il~qv-~e 667 (937)
T KOG0433|consen 591 VQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSEN--TGESKIGPKILDQV-DE 667 (937)
T ss_pred HhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceeeeeecccc--cCceecCHHHHHHH-HH
Confidence 9999999999999999999999999999999999999998 999999999997654 55788999888775 77
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HH
Q 000999 696 VFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DN 774 (1193)
Q Consensus 696 ~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~ 774 (1193)
.+.|++|++||+++++..+. +.....+..++..+|+.+|..|+.+++++++.|++|+|+++++.|..|+ ++
T Consensus 668 ~l~K~R~T~RfllGnl~d~~--------~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~ 739 (937)
T KOG0433|consen 668 KLIKFRNTFRFLLGNLQDFD--------GKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRN 739 (937)
T ss_pred HHHHHHhHHHHHhhcccccC--------CccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 89999999999999987443 2211112346778899999999999999999999999999999999998 89
Q ss_pred HHHHHHHhhhccccCCC-ChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC
Q 000999 775 LTNIYVRFNRKRLKGRS-GEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK 851 (1193)
Q Consensus 775 lsnwYi~~~r~rl~~~~-~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~ 851 (1193)
||+.|+.++|+|++++. ++..+++++.||.++|..+++.++||+||++||+||+|+.. .++ ++...||..+..
T Consensus 740 lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~---~~~-~f~~k~~~l~s~ 813 (937)
T KOG0433|consen 740 LSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGS---HEK-IFRLKWEDLHSG 813 (937)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCC---CCc-ccccCccccchh
Confidence 99999999999999874 45778999999999999999999999999999999999842 223 888999998776
No 24
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.2e-130 Score=1240.92 Aligned_cols=656 Identities=23% Similarity=0.365 Sum_probs=542.1
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
++||++++|++|+++|+++++|++..+ ++ ++|++++|||||||.||+||+++++++|+++||+||+||+|++++|||
T Consensus 3 ~~y~~~~iE~~w~~~W~~~~~f~~~~~--~~-~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 79 (805)
T PRK00390 3 ERYNPKEIEKKWQKYWEENKTFKTTED--SS-KKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 79 (805)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCcc--CC-CCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccC
Confidence 579999999999999999999998653 23 369999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L 167 (1193)
|||||||.++++ .|++ |++|+.+|.++|++++++||+++||+++|.|+||.|.+++||+|.+|
T Consensus 80 ~~Glpie~~a~~-~g~~----------------~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L 142 (805)
T PRK00390 80 AFGLPAENAAIK-TGTH----------------PAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKL 142 (805)
T ss_pred CCCCHHHHHHHH-cCCC----------------HHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHH
Confidence 999999999986 4654 44699999999999999999999999999999999999999999999
Q ss_pred HHcCceeeeceeccccCCCCCccCccccccccccc---------------------------------------------
Q 000999 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDV--------------------------------------------- 202 (1193)
Q Consensus 168 ~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~--------------------------------------------- 202 (1193)
+++||||++.++|+|||.|+|+||++||+.++.+.
T Consensus 143 ~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~w 222 (805)
T PRK00390 143 YEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNW 222 (805)
T ss_pred HHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhh
Confidence 99999999999999999999999999997543111
Q ss_pred --CCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCC
Q 000999 203 --PDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANG 280 (1193)
Q Consensus 203 --~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 280 (1193)
.++.++++|++.+. + .+++||||||||||||+||||||+++|+.+... ++ .. ++..++++...
T Consensus 223 ig~~~~~~i~f~~~~~-~-~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~--~~-~~-~~~~~~~~~~~--------- 287 (805)
T PRK00390 223 IGRSEGAEVTFKVEDS-D-EKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAE--QN-PA-VAAFIEECKKK--------- 287 (805)
T ss_pred ccccceEEEEEEccCC-C-CEEEEEeCCchHhhcceEEEECCCChhHHhhhc--ch-HH-HHHHHHHHhhh---------
Confidence 12568899998753 2 689999999999999999999999999876532 11 11 22233222110
Q ss_pred CCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCC
Q 000999 281 PGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSG 360 (1193)
Q Consensus 281 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~G 360 (1193)
.....+.++ .+++|. |.|++|.+|+ .++.+||+.++||++++|
T Consensus 288 -----------------------------~~~~~~~~~-~~~~g~-l~g~~~~~P~------~~~~ipi~~~~~V~~~~G 330 (805)
T PRK00390 288 -----------------------------SDLERQTET-KEKTGV-FTGLYAIHPL------TGEKIPVWIADYVLMDYG 330 (805)
T ss_pred -----------------------------cchhhhhcc-cceeee-ecCcEEECCC------CCCeeeEEEeccccCCCC
Confidence 001124455 778996 9999996443 368999999999999999
Q ss_pred CCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCc--------cccC-----CCCCCCcchhhhhHHHHHHHHHCC
Q 000999 361 TGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGC--------FTGK-----ITDFSGRYVKDADKDIIEALKAKG 427 (1193)
Q Consensus 361 TGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~--------~~~~-----~~~~~G~~v~ea~~~Ii~~L~~~g 427 (1193)
||+||+|||||++||++|++||| +++++||.+|. |+++ .|.|+|+++++||++|++.|++.|
T Consensus 331 TG~V~~~Pah~~~D~~~~~~~~L-----~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~~L~~~g 405 (805)
T PRK00390 331 TGAVMAVPAHDQRDFEFAKKYGL-----PIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIAWLEEKG 405 (805)
T ss_pred CCeEEEcCCCCHHHHHHHHHcCC-----CceeeeCCCCcccccccccccCCeEEEeccccCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999 88999986552 3333 278999999999999999999999
Q ss_pred CeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCC
Q 000999 428 RLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGT 507 (1193)
Q Consensus 428 ~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~ 507 (1193)
++ +.++.| +++|||||||||||+
T Consensus 406 ~~----------------~~~v~~-----------------------------------------~l~DW~ISRQR~WG~ 428 (805)
T PRK00390 406 LG----------------KRKVNY-----------------------------------------RLRDWGISRQRYWGE 428 (805)
T ss_pred CC----------------CCceEE-----------------------------------------ECCCccccccccCCC
Confidence 83 122222 368999999999999
Q ss_pred cccEEEcCCCCEEEEecChHHHHH-------hhCCc-ccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCc
Q 000999 508 PLPVWTSEDGEEIIVVDSVDKLEK-------LSGEK-IFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPY 579 (1193)
Q Consensus 508 pIPiw~~~~~~~~~~v~s~~el~~-------l~g~~-~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~ 579 (1193)
|||+|+|++|+.+.+ ..++|.. ..|.. ..+.|++|++ ..||. || +.++|++|||||||||+ |||
T Consensus 429 PIPi~~~~~~g~~~v--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~-~g---~~~~re~Dv~DtwfdSs-w~~ 500 (805)
T PRK00390 429 PIPIIHCEDCGIVPV--PEEDLPVVLPEDVVPDGTGSPLAKHPEWVN-VTCPK-CG---KPARRETDTMDTFVGSS-WYY 500 (805)
T ss_pred ceeEEEECCCCceeC--chHhhhhhhhhhcccCCCCChhhhchhhhC-CCccc-cC---CCceeCCcccccccccc-cHH
Confidence 999999999986543 2333321 12211 3356777776 33432 23 37999999999999997 888
Q ss_pred ccccCCCC-----ChhhhhhcCCceeEEecccCc-------cchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccc
Q 000999 580 AYIHYPFE-----NAEHFENNFPGQFIAEGLDQT-------RGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSK 647 (1193)
Q Consensus 580 a~~~~p~~-----~~~~f~~~~Pad~~~~G~D~~-------r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSK 647 (1193)
+...+|.. +++.|++|||+|++++|.||+ |+|++.|..+++ +.++.||++|++|||| ||||
T Consensus 501 ~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~-~~~~~Pfk~v~~~G~v------KMSK 573 (805)
T PRK00390 501 LRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGL-VSSDEPFKKLLTQGMV------KMSK 573 (805)
T ss_pred HHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhc-ccCCcchhhheecCcE------EeCC
Confidence 88777742 467899999999999999998 777767666665 4789999999999999 9999
Q ss_pred cCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchh
Q 000999 648 KLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDL 727 (1193)
Q Consensus 648 S~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~ 727 (1193)
|+||+|+|.+++++||||++|||++++++ .++|++|+++.+.+. +++++++||+++|..... ..+.
T Consensus 574 S~GN~i~p~~~i~~ygaD~lRl~l~~~~~-~~~d~~~s~~~l~~~-~~~l~kl~~~~~~~~~~~--------~~~~---- 639 (805)
T PRK00390 574 SKGNVVDPDDIIEKYGADTARLFEMFAGP-PEKDLEWSDSGVEGA-YRFLQRVWRLVVDAKGEA--------GALD---- 639 (805)
T ss_pred CCCCCCCHHHHHHHcChHHHHHHHHhcCC-ccCCcccCHHHHHHH-HHHHHHHHHHHHHhhhcc--------cccC----
Confidence 99999999999999999999999987544 368999999999875 789999999999843221 1111
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHH
Q 000999 728 ATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVL 807 (1193)
Q Consensus 728 ~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL 807 (1193)
.....+|+|++++++.+++.++++|++|+|++|++.+++|+++++++| + ..+..+++++|
T Consensus 640 ----~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~-~---------------~~~~~~l~~~l 699 (805)
T PRK00390 640 ----VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKAE-D---------------EQDKAVLREAL 699 (805)
T ss_pred ----cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-H---------------HHHHHHHHHHH
Confidence 123468999999999999999999999999999999999999888876 1 23567899999
Q ss_pred HHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC
Q 000999 808 LTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK 851 (1193)
Q Consensus 808 ~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~ 851 (1193)
+.+++||||||||+|||||+.|+. .+|||++.||++++.
T Consensus 700 ~~l~~lLaPf~P~iaEElw~~L~~-----~~sv~~~~wP~~~~~ 738 (805)
T PRK00390 700 EILVRLLAPFAPHLAEELWEKLGH-----EGSIANAPWPTADEA 738 (805)
T ss_pred HHHHHHHhhhhhHHHHHHHHHcCC-----CCeeEecCCCCCCHH
Confidence 999999999999999999999963 479999999998654
No 25
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.7e-130 Score=1240.06 Aligned_cols=664 Identities=23% Similarity=0.370 Sum_probs=536.7
Q ss_pred CCCCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCc-cchhHHHhhHHHHHHHHHHHHcCCccceeccc
Q 000999 8 KDFSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGL-PHYGHILAGTIKDIVTRYQSMMGFHVTRRFGW 86 (1193)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~-lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~ 86 (1193)
+.|||+++|++||++|+++++|++..+.+.++|+|++++|||||||. |||||+++++++|+++||+||+||+|++++||
T Consensus 78 ~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~ 157 (963)
T PLN02563 78 RAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGW 157 (963)
T ss_pred CCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccc
Confidence 47999999999999999999999765435678999999999999996 99999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHH
Q 000999 87 DCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQ 166 (1193)
Q Consensus 87 D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~ 166 (1193)
||||||||..+.+ .|+++ +.++.++++.|++|+++||+|+||+++|.|+||.|.+++||+|.+
T Consensus 158 D~~GlPiE~~a~~-~g~~p----------------~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~ 220 (963)
T PLN02563 158 DAFGLPAEQYAIE-TGTHP----------------KITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQ 220 (963)
T ss_pred cccCcHHHHHHHH-cCCCh----------------HHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHH
Confidence 9999999998865 57644 458899999999999999999999999999999999999999999
Q ss_pred HHHcCceeeeceeccccCCCCCccCcccccccccccCCC-----------------------------------------
Q 000999 167 LYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPDP----------------------------------------- 205 (1193)
Q Consensus 167 L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~----------------------------------------- 205 (1193)
|+++||||++.++|+|||.|+|+||+.||..++.++.+.
T Consensus 221 L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nw 300 (963)
T PLN02563 221 LLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNW 300 (963)
T ss_pred HHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHh
Confidence 999999999999999999999999999998766665544
Q ss_pred -----eEEEEeeecCCC---CcceEEEeecCCCccCCCceEEEccCccEEEEEeccCC----eEEEEehhhhhccCCCCC
Q 000999 206 -----EIMVSFPIVGDP---EKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTG----KIYVVAESRLSALPSEKP 273 (1193)
Q Consensus 206 -----~~~v~f~l~~~~---~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~----~~~i~a~~~~~~~~~~~~ 273 (1193)
.++|+|++.+.. .+.+|+||||||||||||+||||||+++|+.+...... +.|+.+..+...+..
T Consensus 301 iG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~--- 377 (963)
T PLN02563 301 IGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLER--- 377 (963)
T ss_pred ccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhh---
Confidence 378999987531 12689999999999999999999999999865321111 011111111111000
Q ss_pred CCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccc-cCcccccccCCceEEEEec
Q 000999 274 KSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYE-PLFDYFKEFSDVAFRVIAD 352 (1193)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~-Pl~~~~~~~~~~~~~vi~~ 352 (1193)
. .. .+.+|..+.|..+. |+ .++.+||+.+
T Consensus 378 -----------------------------------------~-~~-~~~k~g~~~g~~~~~P~-------~~~~iPI~~a 407 (963)
T PLN02563 378 -----------------------------------------T-EL-QKEKTGVFTGSYAINPA-------TGEAIPIWVA 407 (963)
T ss_pred -----------------------------------------h-hc-cceecccccCcEEeccC-------CCCeeEEEEe
Confidence 0 01 34466778888875 65 3789999999
Q ss_pred CccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeec---CC-----CccccCC-----C----CCCCcchhhh
Q 000999 353 NYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVD---DD-----GCFTGKI-----T----DFSGRYVKDA 415 (1193)
Q Consensus 353 ~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd---~~-----G~~~~~~-----~----~~~G~~v~ea 415 (1193)
+||++++|||+||+|||||++||++|++||| +++++|+ ++ |.|+++. + +|.|+.++||
T Consensus 408 d~V~~~~GTGaVm~~PaHd~~D~~~a~k~~L-----pi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~~~eA 482 (963)
T PLN02563 408 DYVLGSYGTGAIMAVPAHDTRDFEFAQKFDL-----PIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGLSSKEA 482 (963)
T ss_pred cccCCCCCCCeEEEcCCCCHHHHHHHHHcCC-----CceeeeccCccccccccccccCceeEecCCCcccccCCcCHHHH
Confidence 9999999999999999999999999999999 8888883 22 5555431 3 3999999999
Q ss_pred hHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhhhcCC
Q 000999 416 DKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENAR 495 (1193)
Q Consensus 416 ~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~ 495 (1193)
++.|++.|++.|++.+ +++| +++
T Consensus 483 ~~~Ii~~L~~~g~~~~------------------------------------------~v~y---------------~lr 505 (963)
T PLN02563 483 AKKVIEWLEETGNGKK------------------------------------------KVNY---------------KLR 505 (963)
T ss_pred HHHHHHHHHhCCCCCC------------------------------------------eeEe---------------cCC
Confidence 9999999999998621 1222 589
Q ss_pred ceeeccccCCCCcccEEEcCCCCEEEEecChHHH----HHhh-----CCccccc--ccCCCccccccCCCCCCccccccc
Q 000999 496 DWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKL----EKLS-----GEKIFDL--HRHNIDHITIPSSRGPEFGLLRRI 564 (1193)
Q Consensus 496 DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el----~~l~-----g~~~~dl--h~~~id~~~~~~~~g~~~~~~~r~ 564 (1193)
|||||||||||+|||+|+|++|++.+++.. ++| .++. |.....+ +.+|++. +||+ || ++++|+
T Consensus 506 DW~ISRQRyWG~PIPi~~c~~cg~~v~v~e-~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~-~~p~-cg---~~~~Re 579 (963)
T PLN02563 506 DWLFARQRYWGEPIPVVFLEDSGEPVPVPE-SDLPLTLPELDDFTPTGTGEPPLAKAVSWVNT-VDPS-SG---KPARRE 579 (963)
T ss_pred CceEeeecccCCceEEEEEcCCCcEEecch-HhCcccchhhhhcccCCCCCCchhcchhhhcC-cCcC-CC---CCcEEC
Confidence 999999999999999999999987666542 222 1111 1111122 3345433 2443 34 379999
Q ss_pred ccceeeeccCCCCCcccccCCCCChh-----hhhhcCCceeEEecccC-------ccchHHHHHHHHHHccCCCCccEEE
Q 000999 565 EDVFDCWFESGSMPYAYIHYPFENAE-----HFENNFPGQFIAEGLDQ-------TRGWFYTLMVLSTALFGKPAFRNLI 632 (1193)
Q Consensus 565 ~dv~D~WFdSg~~p~a~~~~p~~~~~-----~f~~~~Pad~~~~G~D~-------~r~Wf~~l~~~~~~l~~~~pfk~v~ 632 (1193)
+|||||||+|+ |+|+..++|.++++ .+++|||+|++++|.|| +||||++|+.+|+ +.++.||++|+
T Consensus 580 tDtmDtw~~Ss-wy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~-~~~~ePfk~ll 657 (963)
T PLN02563 580 TNTMPQWAGSC-WYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFQCLV 657 (963)
T ss_pred CCcCCchhhcc-HHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHHHHHHHHhhc-cCCcccHHHHh
Confidence 99999999986 67888888875443 34579999999999999 4999999999998 57899999999
Q ss_pred EEeeEEc---------cCCc---------------------------------------------cccccCCCCCChhhh
Q 000999 633 CNGLVLA---------EDGK---------------------------------------------KMSKKLKNYPSPVEV 658 (1193)
Q Consensus 633 ~hG~vld---------~~G~---------------------------------------------KMSKS~GN~v~P~~l 658 (1193)
+||||+| ++|+ |||||+||+|+|.++
T Consensus 658 ~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~ei 737 (963)
T PLN02563 658 NQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDV 737 (963)
T ss_pred ccceeecCccccceecCCCcCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHHHH
Confidence 9999998 7888 999999999999999
Q ss_pred HhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhH
Q 000999 659 INDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLD 738 (1193)
Q Consensus 659 i~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D 738 (1193)
|++||||+||||++.+++ ..+++.|+.+++.+. .++++++||.+...... ...+.+.. . ...+..|
T Consensus 738 I~kYGADaLRl~ll~~ap-~~dd~~w~~~~V~g~-~rfL~rlwn~~~~~~~~--------~~~~~~~~-~---~~~~~~d 803 (963)
T PLN02563 738 VSEYGADSLRLYEMFMGP-LRDSKTWSTSGVEGV-HRFLGRTWRLVVGAPLP--------DGSFRDGT-V---VTDEEPS 803 (963)
T ss_pred HHHcCcHHHHHHHHhCCC-cccccccCHHHHHHH-HHHHHHHHHHHHHhhhc--------ccccCccc-c---ccCCcch
Confidence 999999999999998765 577889999999875 78999999975432110 00111100 0 0123578
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCc
Q 000999 739 QWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFT 818 (1193)
Q Consensus 739 ~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~ 818 (1193)
+|++++++.++++|+++|++|+|++|++++++|++.+++|+ ..++++|..+++||||||
T Consensus 804 ~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~~~---------------------~~~~~~l~~ll~LLaPf~ 862 (963)
T PLN02563 804 LEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYKWD---------------------KVPREAIEPFVLLLSPYA 862 (963)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCch---------------------HHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999998765431 034678999999999999
Q ss_pred hhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC
Q 000999 819 PFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK 851 (1193)
Q Consensus 819 PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~ 851 (1193)
||+|||||++|+. .+|||++.||++++.
T Consensus 863 PhiaEELW~~Lg~-----~~sv~~~~WP~~d~~ 890 (963)
T PLN02563 863 PHLAEELWFRLGH-----SNSLAYEPWPEANPS 890 (963)
T ss_pred hhHHHHHHHHcCC-----CCeeeeCCCCCCCHH
Confidence 9999999999973 479999999998643
No 26
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=3.4e-130 Score=1238.32 Aligned_cols=663 Identities=25% Similarity=0.400 Sum_probs=540.8
Q ss_pred CCchHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchh
Q 000999 10 FSFSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCH 89 (1193)
Q Consensus 10 ~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~h 89 (1193)
|||+++|++||++|+++++|++..+ +++|+|++++|||||||.|||||++++|++|+++||+||+||+|++++|||||
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~--~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~ 78 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDD--SNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAF 78 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCC--CCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCC
Confidence 7999999999999999999998653 57888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHH
Q 000999 90 GLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYE 169 (1193)
Q Consensus 90 Glpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~ 169 (1193)
|||||..+++ .|+++. +|+.++.+.|+++|++||+|+||+++|.|+||.|++++||+|.+|++
T Consensus 79 Glpie~~a~~-~g~~p~----------------~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~ 141 (842)
T TIGR00396 79 GLPAENAAIK-RGIHPA----------------KWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFE 141 (842)
T ss_pred ChHHHHHHHH-cCCCHH----------------HHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999976 577653 48999999999999999999999999999999999999999999999
Q ss_pred cCceeeeceeccccCCCCCccCcccccc-cccccC---------------------------------------------
Q 000999 170 KGLVYKGFKVMPYSTGCKTPLSNFEAGQ-NYKDVP--------------------------------------------- 203 (1193)
Q Consensus 170 kGliy~~~~~v~wcp~~~T~Ls~~Ev~~-~y~~~~--------------------------------------------- 203 (1193)
+||||++.++|+|||.|+|+|||+||.. ++.+..
T Consensus 142 kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wi 221 (842)
T TIGR00396 142 KGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWI 221 (842)
T ss_pred CCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcc
Confidence 9999999999999999999999999942 222211
Q ss_pred --CCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCC
Q 000999 204 --DPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGP 281 (1193)
Q Consensus 204 --~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~ 281 (1193)
+..++|+|++.+. + .+|+||||||||||||+||||||+++|+.+... +..+++.+.+..
T Consensus 222 g~s~g~~i~f~~~~~-~-~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~--------~~~~v~~~~~~~--------- 282 (842)
T TIGR00396 222 GKSEGVEITFKIADH-K-EKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAE--------NNPKVAAFIKKI--------- 282 (842)
T ss_pred cccceEEEEEEcCCC-C-CEEEEEeCCcHHhhhccEEEECCCCHHHHhhhc--------chHHHHHHHHHH---------
Confidence 3357889998653 2 589999999999999999999999999876321 112233332200
Q ss_pred CCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCCC
Q 000999 282 GGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGT 361 (1193)
Q Consensus 282 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GT 361 (1193)
.++.. . ++.++ ++.+|..|.|+.|.+|+ .++.+||+.++||++++||
T Consensus 283 -------~~~~~------------------~-~~~~~-~~~~~g~~~g~~~~~P~------~~~~ipi~~~~~V~~~~GT 329 (842)
T TIGR00396 283 -------LQKTT------------------T-ERTKE-TKLKKGVFTGIKAIHPL------TGEKIPIWVANYVLASYGT 329 (842)
T ss_pred -------hccCc------------------h-hhhhh-hcccccEecCCEEECCC------CCCEeEEEEeCcccCCCCC
Confidence 00000 0 02333 56788889999996443 3689999999999999999
Q ss_pred CceeecCCCChhhHHHHHHcCCCccCCCcceeecC------------CCccccCCCCCCCcchhhhhHHHHHHHHHCCCe
Q 000999 362 GIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDD------------DGCFTGKITDFSGRYVKDADKDIIEALKAKGRL 429 (1193)
Q Consensus 362 GiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~------------~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l 429 (1193)
|+||+|||||++||++|++||| +++++||+ +|+|++. +.|+|++++||++.|+++|+++|++
T Consensus 330 G~V~~~Pahd~~D~~~~~k~~L-----~i~~vi~~~~~~~~~~~~~~~G~~~~~-~~~~Gl~~~~A~~~Ii~~L~~~g~~ 403 (842)
T TIGR00396 330 GAVMGVPAHDERDFEFAQKYKL-----PIKVVIDPAGKNLKTQAFTEDGVLVNS-GEFNGLNSSEAREAIIAMLEKEGKG 403 (842)
T ss_pred CeEEEcCCCCHHHHHHHHHhCC-----CcceeeCCcccccccccccCCceEecc-hhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999 89999983 6777754 8999999999999999999999985
Q ss_pred eeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcc
Q 000999 430 VKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPL 509 (1193)
Q Consensus 430 ~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pI 509 (1193)
. .++.| +++|||||||||||+||
T Consensus 404 ~----------------~~v~y-----------------------------------------rlrDW~ISRQRyWG~PI 426 (842)
T TIGR00396 404 K----------------RKVNY-----------------------------------------RLRDWLFSRQRYWGEPI 426 (842)
T ss_pred C----------------ceEEe-----------------------------------------ecccceeecccccCCce
Confidence 3 12222 36899999999999999
Q ss_pred cEEEcCCCCEEEEecC-----hHHHHHhhCCc--ccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccc
Q 000999 510 PVWTSEDGEEIIVVDS-----VDKLEKLSGEK--IFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYI 582 (1193)
Q Consensus 510 Piw~~~~~~~~~~v~s-----~~el~~l~g~~--~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~ 582 (1193)
|+|+|++|+.+.+..+ +.++....|.. ..+.|++|+ .++||. || ++++|++|||||||||| |+|...
T Consensus 427 Pi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~-~~~cp~-cg---~~~~retDtmDtw~dSs-wy~~r~ 500 (842)
T TIGR00396 427 PIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWV-NVTCPS-CG---KPALRETDTMDTFAGSS-WYYLRY 500 (842)
T ss_pred EEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhh-cCcCcc-CC---CCcEeCCCCCCCcccCC-HHHHHh
Confidence 9999999987654321 22222222321 224456665 344544 34 37999999999999998 554433
Q ss_pred ------cCCCCChhhhhhcCCceeEEecccCc-------cchHHHHHHHHHHccCCCCccEEEEEeeEEc----cCCc--
Q 000999 583 ------HYPFENAEHFENNFPGQFIAEGLDQT-------RGWFYTLMVLSTALFGKPAFRNLICNGLVLA----EDGK-- 643 (1193)
Q Consensus 583 ------~~p~~~~~~f~~~~Pad~~~~G~D~~-------r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld----~~G~-- 643 (1193)
++|+ +++.|++|||+|++++|.||+ |||+..|. ....+.++.||++|++||||+| ++|+
T Consensus 501 ~~p~~~~~~~-~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~-~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~ 578 (842)
T TIGR00396 501 LDPKNTDQPF-DKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLY-DIGYVSTKEPFKKLINQGMVLGFYYPPNGKSP 578 (842)
T ss_pred hCCCCcCCCc-ChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHH-hccccCCCccHHHHhccceEEeeeecCCCCcc
Confidence 4454 366789999999999999997 88774444 3345678999999999999999 8999
Q ss_pred -------------------------cccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhh
Q 000999 644 -------------------------KMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFL 698 (1193)
Q Consensus 644 -------------------------KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~ 698 (1193)
|||||+||+|+|.++|++||||++|||++++++ ..+|++|+++.+.+ .+++++
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~-~~~d~~~~~~~l~~-~~~~l~ 656 (842)
T TIGR00396 579 PDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGP-IAASLEWNDSGLEG-ARRFLD 656 (842)
T ss_pred ChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCC-cCCCCccCHHHHHH-HHHHHH
Confidence 999999999999999999999999999996544 35899999999976 488999
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHH
Q 000999 699 PWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYR-LYTVVPYLLKFLDNLTN 777 (1193)
Q Consensus 699 kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~-~~~a~~~l~~fi~~lsn 777 (1193)
+|||+++++..++... ..+.+ ...+.+|+||+++++.+++.|+++|++|+ |++|++++++|++++++
T Consensus 657 kl~~~~~~~~~~~~~~-----~~~~~-------~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~ 724 (842)
T TIGR00396 657 RVWNLFYNILGELDGK-----TYLTP-------TILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNALYK 724 (842)
T ss_pred HHHHHHHHHHhhhccc-----ccCCc-------ccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 9999999876554210 00110 12457899999999999999999999999 99999999999987765
Q ss_pred HHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC
Q 000999 778 IYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK 851 (1193)
Q Consensus 778 wYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~ 851 (1193)
+ . .+ .+++++|..+++|||||+||+|||||+.|+. ...|||.+.||++++.
T Consensus 725 ~-~-------------~~-----~~l~~~l~~ll~lLaPf~PhiaEElW~~l~~----~~~sv~~~~wP~~d~~ 775 (842)
T TIGR00396 725 A-K-------------KD-----ALYLEYLKGFLTVLSPFAPHLAEELWEKLGS----EPFIIKQAKWPKVDET 775 (842)
T ss_pred h-h-------------hH-----HHHHHHHHHHHHHHhhhhhHHHHHHHHHhCC----CCCeeecCCCCCCCHH
Confidence 2 1 00 3789999999999999999999999999963 2358999999997643
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-99 Score=922.72 Aligned_cols=700 Identities=23% Similarity=0.338 Sum_probs=503.9
Q ss_pred CCCchHHHHHHHHHHHhcCCcccccccCCCC-CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 9 DFSFSREEEKILEFWNSIDAFKTQLDRTRCQ-PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 9 ~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~-~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
.|++.++|+|||++|+++++|+...+ .++ ++|+++++.|||||.||+||++|||+.||++||+||+||||++++|||
T Consensus 4 ~y~~~~IE~KWQ~~W~e~~~Fe~~~d--~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwd 81 (814)
T COG0495 4 RYNPREIEEKWQKRWEEAKVFEADED--SDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 81 (814)
T ss_pred ccchHHHHHHHHHHHHhcCCcccCCC--CCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCccc
Confidence 69999999999999999999998654 233 699999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHH
Q 000999 88 CHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQL 167 (1193)
Q Consensus 88 ~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L 167 (1193)
++|||+|..+++ .|..|+ .|+.+++..+++||++||+++||+|.+.|+||+|.+++||+|.+|
T Consensus 82 afGlPae~~A~~-~~~~P~----------------~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL 144 (814)
T COG0495 82 AFGLPAENAAIK-IGTDPA----------------KWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKL 144 (814)
T ss_pred ccCchHHHHHHH-hCCChH----------------HHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHH
Confidence 999999999986 577554 499999999999999999999999999999999999999999999
Q ss_pred HHcCceeeeceeccccCCCCCccCcccccccccccCC------CeEEEEeeecCCCC---cceEEEeecCCCccCCCceE
Q 000999 168 YEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVPD------PEIMVSFPIVGDPE---KAAFVAWTTTPWTLPSNLAL 238 (1193)
Q Consensus 168 ~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~------~~~~v~f~l~~~~~---~~~l~vwTTtPwTl~~n~al 238 (1193)
++|||+|++.++|+|||.|+|+|+||||..+..-..+ ...-..|++.+..+ +....+.|-+|+|+.+-+..
T Consensus 145 ~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~n 224 (814)
T COG0495 145 YEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRN 224 (814)
T ss_pred HHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHc
Confidence 9999999999999999999999999999876422221 22234555554311 01345566688888888888
Q ss_pred EEccCccEEEEEeccCC---eEEEEehhhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccc
Q 000999 239 CVNANFTYVKVRNKYTG---KIYVVAESRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESY 315 (1193)
Q Consensus 239 ~V~p~~~Yv~v~~~~~~---~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 315 (1193)
+|+|+..|+......+. ...-+...|..++++-.. -.++..++-.........+ ..-+..++.........
T Consensus 225 WIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~-~~~a~~h~lv~~~~~~~~~-----~~~a~fv~~~~~~~~~~ 298 (814)
T COG0495 225 WIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTY-VVLAPEHPLVGKLVTNPQT-----PLVAEFVDECKGTGVVE 298 (814)
T ss_pred CcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEE-EEEeCCchHHHHHhcCccc-----hhHHHHHHHhcCCCcee
Confidence 88888888777653221 223444444444433100 0000011100000000000 00000000000000000
Q ss_pred eEee-eeeecccccccccccCcccccccCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceee
Q 000999 316 EKLG-EVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAV 394 (1193)
Q Consensus 316 ~i~~-~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~v 394 (1193)
.+.. .+.+|-.+-+..-+|+ ++..+||+.++||-+..|||+||.+|||++.||+.+.++++ ++...|
T Consensus 299 ~~~~~~~k~gv~~g~~a~~p~-------~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l-----~i~~vi 366 (814)
T COG0495 299 SVPAHAEKDGVFLGGYAINPV-------NGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKL-----PIKKVI 366 (814)
T ss_pred eeeccCCCcceeccccccCCC-------CCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCC-----CeEEEE
Confidence 0000 1123333332222344 46889999999999999999999999999999999999999 666655
Q ss_pred cCCC-----------ccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHH
Q 000999 395 DDDG-----------CFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVET 463 (1193)
Q Consensus 395 d~~G-----------~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~ 463 (1193)
...| .+. +.+.|.|+...+|...|+..|.+ +...|||+++
T Consensus 367 ~~~~~~~~~~~~~~g~li-nS~~~~gl~~e~a~~~~~~~l~~--------------------------~~~~q~~v~Y-- 417 (814)
T COG0495 367 MPEGTVGKKVYEGEGVLI-NSGGLDGLDYEEAKVKIRCGLVK--------------------------RGLGQWFVNY-- 417 (814)
T ss_pred ecCCCcccceeccCceEe-ccccccCcchhHHHHHHHHhHHH--------------------------hcCCceEEec--
Confidence 4433 322 12467777777664444444433 3457888875
Q ss_pred HHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHh----h---CC-
Q 000999 464 LKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKL----S---GE- 535 (1193)
Q Consensus 464 ~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l----~---g~- 535 (1193)
.++||.+|||||||.|||+.+|++|+.+.+. ++.|... . |.
T Consensus 418 -----------------------------~lrdW~~srqRywg~pipii~~e~~~~~~~~--~d~Lpv~lp~~~~~~gt~ 466 (814)
T COG0495 418 -----------------------------RLRDWLKSRQRYWGEPIPIIHCEDCGVVPVP--EDWLPVKLPERVRGLGTG 466 (814)
T ss_pred -----------------------------ccchHHHHHHHHhCCCcceeEcccCCcccCc--hHhcCcccccccccCCCC
Confidence 4789999999999999999999999876543 2233211 1 11
Q ss_pred cccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCC-----CChhhhhhcCCceeEEecccCccc
Q 000999 536 KIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPF-----ENAEHFENNFPGQFIAEGLDQTRG 610 (1193)
Q Consensus 536 ~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~-----~~~~~f~~~~Pad~~~~G~D~~r~ 610 (1193)
.....+..|+ ..+||+ ++..|+.++||+|++|+++..-...+-| ..++.|.+|||.|++++|+|++-.
T Consensus 467 ~pL~~~~~W~-~~s~~~------s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavl 539 (814)
T COG0495 467 SPLPWDEEWV-IESLPD------STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVL 539 (814)
T ss_pred CCCCCCcceE-EEecCC------CceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHH
Confidence 0122333343 122322 3789999999999999965433232222 246789999999999999999988
Q ss_pred hHHHHHHHHHHccC------CCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccc
Q 000999 611 WFYTLMVLSTALFG------KPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRF 684 (1193)
Q Consensus 611 Wf~~l~~~~~~l~~------~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~F 684 (1193)
|.-...+.+.++++ +.||++++++|||+..+|+||||||||+|+|++++++||||++|+|++.+++ ..+|++|
T Consensus 540 HLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap-~~~d~~W 618 (814)
T COG0495 540 HLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAP-PEQDLEW 618 (814)
T ss_pred HHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCC-hhhCCCC
Confidence 86666667777774 5899999999999977899999999999999999999999999999998776 4789999
Q ss_pred cHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhc-CChhH
Q 000999 685 KKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEG-YRLYT 763 (1193)
Q Consensus 685 s~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~-y~~~~ 763 (1193)
+++++.+. +++|.++|+.+.-...... .... ......|+|.+++ +++.|++.+++ +.|++
T Consensus 619 ~e~gv~g~-~rfL~r~~~l~~~~~~~~~---------~~~~------~~~~~~~~~~~h~---~~~~v~~~~e~~~~~nt 679 (814)
T COG0495 619 SESGVEGA-RRFLQRVWNLVKEHLEKLV---------EELT------KEQGKEDRWLLHR---TIKKVTEDFEARQTFNT 679 (814)
T ss_pred ChhhhHHH-HHHHHHHHHHHHHhhhccc---------cccc------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 99999886 7889999984432221100 0000 0111567887765 45556666665 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeec
Q 000999 764 VVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFC 843 (1193)
Q Consensus 764 a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~ 843 (1193)
|+..+|.|+++| .+|.+.... +. .+|.+++..+++||+||+||+|||||+.|+. .++|+.+
T Consensus 680 ~i~~~m~l~N~l-~~~~~~~~~---------~~----~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~-----~~~v~~~ 740 (814)
T COG0495 680 AIAALMELLNAL-RKYLRRTEG---------DR----KVLREALETWVRLLAPFAPHIAEELWEELGN-----EGFVSNA 740 (814)
T ss_pred HHHHHHHHHHHH-HHHHhcccc---------hH----HHHHHHHHHHHHHhcccccHHHHHHHHHhcC-----CCceeeC
Confidence 999999999864 566543211 11 5788899999999999999999999999974 3589999
Q ss_pred cCCCCcCC
Q 000999 844 SFPKEEGK 851 (1193)
Q Consensus 844 ~~P~~~~~ 851 (1193)
+||+++++
T Consensus 741 ~wP~~de~ 748 (814)
T COG0495 741 PWPEPDEE 748 (814)
T ss_pred CCCCCChh
Confidence 99999876
No 28
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-88 Score=775.29 Aligned_cols=659 Identities=21% Similarity=0.329 Sum_probs=482.0
Q ss_pred chHHHHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhH
Q 000999 12 FSREEEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 12 ~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
...+|+.|.++|++.-.|.+. .+.++++ ++++++|||+|.|||||.+.|||.|+++||+||+||+|+.++|||.+||
T Consensus 32 ~~~iEk~W~~~~~~~~~~~~~--~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGL 108 (876)
T KOG0435|consen 32 IAMIEKHWKQYLKDGFPFSKD--SDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGL 108 (876)
T ss_pred HHHHHHHHHHHHhcCCccccc--cccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCC
Confidence 346899999999999888753 3456777 5679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcC
Q 000999 92 PVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKG 171 (1193)
Q Consensus 92 pie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kG 171 (1193)
|.|+.+.. -|+.++. |...+++.|++|+++||+++|||++..|++|+|.+++||+|.+||++|
T Consensus 109 PAENAAie-rgv~P~s----------------WT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~G 171 (876)
T KOG0435|consen 109 PAENAAIE-RGVHPAS----------------WTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKG 171 (876)
T ss_pred chhhHHHh-cCCCchh----------------hhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhh
Confidence 99998864 6998764 889999999999999999999999999999999999999999999999
Q ss_pred ceeeeceeccccCCCCCccCcccccc-c-----------------------cc--------------cc---------CC
Q 000999 172 LVYKGFKVMPYSTGCKTPLSNFEAGQ-N-----------------------YK--------------DV---------PD 204 (1193)
Q Consensus 172 liy~~~~~v~wcp~~~T~Ls~~Ev~~-~-----------------------y~--------------~~---------~~ 204 (1193)
|.|+....|||||..+|+|+|.+|.. + |- ++ ..
T Consensus 172 LAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~ 251 (876)
T KOG0435|consen 172 LAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRC 251 (876)
T ss_pred hhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccc
Confidence 99999999999999999999999931 1 10 00 01
Q ss_pred CeEEEEeeecCCC-CcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCC
Q 000999 205 PEIMVSFPIVGDP-EKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGG 283 (1193)
Q Consensus 205 ~~~~v~f~l~~~~-~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~ 283 (1193)
...-+.|+|.++. ++.-|.||||+|+||.+...+++.|++..+.... .+..++
T Consensus 252 ~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~------------~lkefl-------------- 305 (876)
T KOG0435|consen 252 DGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDS------------SLKEFL-------------- 305 (876)
T ss_pred cceEEEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhc------------hHHHhh--------------
Confidence 1345789987653 3478999999999999999999999987543211 011111
Q ss_pred CCCCCcccccccCCCcccchhhhhcccccccceEeeeeeeccccccccc-ccCcccccccCCceEEEEecCccccCCCCC
Q 000999 284 DSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKY-EPLFDYFKEFSDVAFRVIADNYVTSDSGTG 362 (1193)
Q Consensus 284 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y-~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTG 362 (1193)
.-++|.++-| .|.+ .....+++++||+.++||....|||
T Consensus 306 ---------------------------------------~~~~l~~Kg~~lp~~-A~Np~tg~~iPv~~a~~v~~~~gt~ 345 (876)
T KOG0435|consen 306 ---------------------------------------SKSDLPQKGVQLPCQ-AKNPVTGRAIPVVVADYVLDPYGTG 345 (876)
T ss_pred ---------------------------------------hhhhccccCccccee-eccCCCCceeeEEEechhccCCCcc
Confidence 0112222222 1211 1122378999999999999999999
Q ss_pred ceeecCCCChhhHHHHHHcCCCccCCCcce-eecCCCccccCCCCCCC-cchhhhhHHHHHHHHHCCCeeeeccccccCC
Q 000999 363 IVHCAPAFGEDDYRVCIENQIINKGENLIV-AVDDDGCFTGKITDFSG-RYVKDADKDIIEALKAKGRLVKTGSLTHSYP 440 (1193)
Q Consensus 363 iVh~aPahg~~D~~~~~~~~l~~~~~~~~~-~vd~~G~~~~~~~~~~G-~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp 440 (1193)
+|+.+|+|+..|++++++-|+-- ...++ ..+.+|+-++. ..+.| +-.++|...|++.+++.|.--.
T Consensus 346 a~m~~P~hd~rD~ela~~~~~~~--~~~~~~~f~~~~K~~~~-~~~tn~~~~q~a~~~l~~~~~~~g~g~~--------- 413 (876)
T KOG0435|consen 346 AVMGAPGHDQRDKELAQKIGIKW--IICIEVIFTNFGKKNEQ-KAFTNLDIRQNAALKLFQFAERKGVGGY--------- 413 (876)
T ss_pred eeeeccCcccchhHHHhccccee--EEEEeeeecchhhhhcc-ccccchhHHHHHHHHHHHHHHhcCCCcc---------
Confidence 99999999999999999965510 01111 23455554433 34577 4455788888988888775210
Q ss_pred cccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEE
Q 000999 441 FCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEI 520 (1193)
Q Consensus 441 ~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~ 520 (1193)
+.. ..++||.||||||||||||+-+|++|+.+
T Consensus 414 -----------------------------------------~vs-------~kLkDWLiSRQRyWGTPIPivhc~~cG~v 445 (876)
T KOG0435|consen 414 -----------------------------------------VVS-------YKLKDWLISRQRYWGTPIPIVHCDDCGAV 445 (876)
T ss_pred -----------------------------------------eec-------chhhhhhhhhhhccCCCcceEEcCCCCcc
Confidence 000 14789999999999999999999999976
Q ss_pred EEecChHHHH----HhhCCcccccccCCCcc-ccccCCCCCCcccccccccceeeeccCCCCCcccc--cC---CCCChh
Q 000999 521 IVVDSVDKLE----KLSGEKIFDLHRHNIDH-ITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYI--HY---PFENAE 590 (1193)
Q Consensus 521 ~~v~s~~el~----~l~g~~~~dlh~~~id~-~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~--~~---p~~~~~ 590 (1193)
.+..+ +|. ++.+.+..-.-..-+|. +.+.|+.|+ ++.+|++|+||||+||++..+-.+ +. || +++
T Consensus 446 pVpes--~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg--~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~-d~a 520 (876)
T KOG0435|consen 446 PVPES--ELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCG--EPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPF-DKA 520 (876)
T ss_pred cCcHH--HCCcccccccccCCCCCcccchhhheeccCccCC--CcccccccccchhhccceeeEeecCCCCccccc-chh
Confidence 65432 221 11111100000001111 223444343 489999999999999987543322 22 22 233
Q ss_pred hhhhcCCceeEEecccC-------ccchHHHHHHHHHHccCCCCccEEEEEeeEEcc------CC---------------
Q 000999 591 HFENNFPGQFIAEGLDQ-------TRGWFYTLMVLSTALFGKPAFRNLICNGLVLAE------DG--------------- 642 (1193)
Q Consensus 591 ~f~~~~Pad~~~~G~D~-------~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~------~G--------------- 642 (1193)
.-.++.|+|+++.|+++ .|||-+.|.-+++ ..+..||+.++.+|+|+.. .|
T Consensus 521 ~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~-~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~ 599 (876)
T KOG0435|consen 521 KAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGV-VSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQ 599 (876)
T ss_pred hhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCC-CcCCCcHHHHHhhhcccceEEecCCCCccCCHHHhhhhcCCc
Confidence 34578999999999998 3556555555554 3456999999999999852 22
Q ss_pred ----------------ccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHH
Q 000999 643 ----------------KKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRF 706 (1193)
Q Consensus 643 ----------------~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f 706 (1193)
+|||||++|+|||.+++++||+|++|+|++.+++ ..++++|++..+.++ .+.+.++|+...-
T Consensus 600 ~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap-~~~~~nW~es~i~Gi-~rwl~riw~l~~~ 677 (876)
T KOG0435|consen 600 NKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAP-PRDPINWNESAIPGI-KRWLQRIWALVSQ 677 (876)
T ss_pred ceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCC-cccccccccccchhH-HHHHHHHHHHHHH
Confidence 4999999999999999999999999999987666 367899999999875 7899999997655
Q ss_pred HHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHHHHHHhhhc
Q 000999 707 LVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEG-YRLYTVVPYLLKFLDNLTNIYVRFNRK 785 (1193)
Q Consensus 707 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~-y~~~~a~~~l~~fi~~lsnwYi~~~r~ 785 (1193)
+.+.-+ .+..-.+. .+.......++-+.+..|.+++.|+++++. +.++.|+..++.|.|.|...+=...
T Consensus 678 ~~~ar~-----~g~~~d~~---~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~~-- 747 (876)
T KOG0435|consen 678 ILQARD-----DGKAKDLK---KLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVL-- 747 (876)
T ss_pred HHHHHh-----cCCccccc---ccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--
Confidence 554322 11111111 101223456788999999999999999984 6699999999999987765441110
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCe-eeccCCCCcCC
Q 000999 786 RLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESI-HFCSFPKEEGK 851 (1193)
Q Consensus 786 rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SV-h~~~~P~~~~~ 851 (1193)
.+. ...-.+|..+++||+|++||+|+|+|..|+.. .+. ....||+++..
T Consensus 748 -~h~-----------~~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~-----~~~~~~~~WP~vd~~ 797 (876)
T KOG0435|consen 748 -VHS-----------PEFERALEALVIMLAPFAPHVASELWSALAND-----LSWVSDVKWPEVDPD 797 (876)
T ss_pred -hcC-----------hHHHHHHHHHHHHHhccCchhHHHHHHHHhcc-----ccchhccCCccCChh
Confidence 011 12334577889999999999999999999842 222 23369998754
No 29
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=3.7e-88 Score=792.13 Aligned_cols=380 Identities=33% Similarity=0.605 Sum_probs=343.7
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHH
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNE 119 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~ 119 (1193)
|+|+|++|||||||.||+||+++++++|+++||+||+|++|++++||||||+|||..++|+++.+.+ ++..+++++|++
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~-~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGK-TRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhccccc-chhcCCHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999998887764 566799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccccccc
Q 000999 120 ACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNY 199 (1193)
Q Consensus 120 ~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y 199 (1193)
.|++++++|+++|++++++||+++||+++|.|+||.|.+.|+|+|.+|+++|+||++.++++|||+|+|+||++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~e----- 154 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIE----- 154 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcch-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887211
Q ss_pred cccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCC
Q 000999 200 KDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAAN 279 (1193)
Q Consensus 200 ~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 279 (1193)
T Consensus 155 -------------------------------------------------------------------------------- 154 (382)
T cd00817 155 -------------------------------------------------------------------------------- 154 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCC
Q 000999 280 GPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDS 359 (1193)
Q Consensus 280 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~ 359 (1193)
T Consensus 155 -------------------------------------------------------------------------------- 154 (382)
T cd00817 155 -------------------------------------------------------------------------------- 154 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccC
Q 000999 360 GTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSY 439 (1193)
Q Consensus 360 GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~y 439 (1193)
T Consensus 155 -------------------------------------------------------------------------------- 154 (382)
T cd00817 155 -------------------------------------------------------------------------------- 154 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCCCCeEEeeeCccccccHHHHHHHHHhhcC--CccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCC
Q 000999 440 PFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQ--TYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDG 517 (1193)
Q Consensus 440 p~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~--~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~ 517 (1193)
+|||||+|++++.++||||+++++++++++.+++ ++|+|++.+ +++.+||++++||||||||+||+|||+|+|++|
T Consensus 155 -vc~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~-~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~ 232 (382)
T cd00817 155 -VCSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERME-KRYENWLENIRDWCISRQLWWGHRIPAWYCKDG 232 (382)
T ss_pred -hcccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHH-HHHHHHHhhCccceeeeccccCCccceEEeCCC
Confidence 0899999999999999999999999999999987 899999865 799999999999999999999999999999998
Q ss_pred CEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCC
Q 000999 518 EEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFP 597 (1193)
Q Consensus 518 ~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~P 597 (1193)
++++ +++.+++.... .+ ...++++|+ ..++|+++|||||||||++|+++.+||.+ ++.|+++||
T Consensus 233 ~~~~-~~~~~~~~~~~-------~~-----~~~~~~~~~--~~~~~~~~v~dvWfds~~~~~~~~~~~~~-~~~~~~~~p 296 (382)
T cd00817 233 GHWV-VAREEDEAIDK-------AA-----PEACVPCGG--EELKQDEDVLDTWFSSSLWPFSTLGWPEE-TKDLKKFYP 296 (382)
T ss_pred CcEE-ecchhHHHHHH-------hc-----cccccCCCc--cCeeECCceeeeeecCCCcHHHHhCCCCc-chhHhhcCC
Confidence 8765 44433322111 11 122333444 47999999999999999999999999954 467999999
Q ss_pred ceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCcc
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVV 677 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~ 677 (1193)
+|++++|+||+|||+.++++.+.++.+..||+++++||+|++.+|+|||||+||+|+|.+++++||+|++||||++.++
T Consensus 297 ~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~- 375 (382)
T cd00817 297 TSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAAT- 375 (382)
T ss_pred CCeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred ccccccc
Q 000999 678 RAETLRF 684 (1193)
Q Consensus 678 ~~~d~~F 684 (1193)
.++|.+|
T Consensus 376 ~~~D~~f 382 (382)
T cd00817 376 QGRDINL 382 (382)
T ss_pred ccCCCCC
Confidence 5778776
No 30
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.4e-83 Score=790.28 Aligned_cols=513 Identities=19% Similarity=0.259 Sum_probs=392.6
Q ss_pred CcEEEEcCCCCCCCccchhHHHhh-HHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHH
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAG-TIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYN 118 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~-~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~ 118 (1193)
++|+++.|||||||.|||||++++ +++|+++||+||+|++|.+++|||+||+||+.++++ .|+++
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~-~g~~~------------- 68 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK-EGVTP------------- 68 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHH-cCCCH-------------
Confidence 469999999999999999999997 999999999999999999999999999999999986 57754
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCccccccc
Q 000999 119 EACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQN 198 (1193)
Q Consensus 119 ~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~ 198 (1193)
++++.+|.+.+++++++|| |++|.+++|+||.|++.++++|.+|+++|+||++.++++|||+|+|+|++..+.
T Consensus 69 ---~~~~~~~~~~~~~~~~~l~--i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~-- 141 (556)
T PRK12268 69 ---QELADKYHEEHKEDFKKLG--ISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVE-- 141 (556)
T ss_pred ---HHHHHHHHHHHHHHHHHcC--CcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCcccee--
Confidence 4589999999999999999 578889999999999999999999999999999999999999999999964331
Q ss_pred ccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCC
Q 000999 199 YKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAA 278 (1193)
Q Consensus 199 y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~ 278 (1193)
++.|. |- .+.
T Consensus 142 ---------------------------g~cp~--------c~-~~~---------------------------------- 151 (556)
T PRK12268 142 ---------------------------GTCPY--------CG-YEG---------------------------------- 151 (556)
T ss_pred ---------------------------ccCCC--------CC-Ccc----------------------------------
Confidence 11111 00 000
Q ss_pred CCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccC
Q 000999 279 NGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSD 358 (1193)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~ 358 (1193)
..|..
T Consensus 152 -------------------------------------------~~G~~-------------------------------- 156 (556)
T PRK12268 152 -------------------------------------------ARGDQ-------------------------------- 156 (556)
T ss_pred -------------------------------------------cCCch--------------------------------
Confidence 00000
Q ss_pred CCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeecccccc
Q 000999 359 SGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHS 438 (1193)
Q Consensus 359 ~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~ 438 (1193)
+-+|.+.+ ...++.
T Consensus 157 ----ce~cg~~~------------------------------------------------------------~~~~l~-- 170 (556)
T PRK12268 157 ----CDNCGALL------------------------------------------------------------DPTDLI-- 170 (556)
T ss_pred ----hhhccccC------------------------------------------------------------ChHHhc--
Confidence 00011000 001111
Q ss_pred CCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhhh-cCCceeeccccCCCCcccEEEcCCC
Q 000999 439 YPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLE-NARDWAVSRSRFWGTPLPVWTSEDG 517 (1193)
Q Consensus 439 yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~-~l~DW~ISRqr~WG~pIPiw~~~~~ 517 (1193)
-|+|+|||+|+++++++||||++++++++++++++++.|+|+..+ +++.+||+ +++||||||||+|||||| |.+.+
T Consensus 171 ~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~-~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~~- 247 (556)
T PRK12268 171 NPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVL-NFTLNWLKEGLKPRAITRDLDWGIPVP-WPGFE- 247 (556)
T ss_pred CCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHH-HHHHHHHhCCCCCcCceeeCCCCeeCC-CCCCC-
Confidence 289999999999999999999999999999999998889999865 89999999 899999999999999999 87654
Q ss_pred CEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCccccccccccee-eeccCCCCCcccccCCCCChhhhhhcC
Q 000999 518 EEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFD-CWFESGSMPYAYIHYPFENAEHFENNF 596 (1193)
Q Consensus 518 ~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D-~WFdSg~~p~a~~~~p~~~~~~f~~~~ 596 (1193)
++++++|..+-+-.+++. . .+.+ .+| +++++| .|+|||
T Consensus 248 ~~~iyvW~da~~~y~~~~--~----~~~~------~~g--------~~~~~~~~w~ds~--------------------- 286 (556)
T PRK12268 248 GKVFYVWFDAVIGYISAS--K----EWAE------RTG--------DPEAWKEFWLDPE--------------------- 286 (556)
T ss_pred CcEEEEeehHhhHHHHHH--H----HHHH------hcC--------CchHHHHHhCCCC---------------------
Confidence 455666542211110000 0 0000 000 123343 333433
Q ss_pred CceeEEecccCccchHHH--HHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhC
Q 000999 597 PGQFIAEGLDQTRGWFYT--LMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674 (1193)
Q Consensus 597 Pad~~~~G~D~~r~Wf~~--l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~ 674 (1193)
|++++++|+||++||-.. .+.++.....+. ++++++|||+++ +|+|||||+||+|+|.++|++||+|++||||++.
T Consensus 287 ~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~-P~~v~~~G~v~~-~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~ 364 (556)
T PRK12268 287 TKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKL-PDEIVSSEYLTL-EGGKFSKSRGWGIWVDDALERYPPDYLRYYLAAN 364 (556)
T ss_pred CeEEEEEeeccCcchHHHHHHHHHhcCCCCCC-CCEeeccCCEEE-CCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhc
Confidence 567899999999976322 222222211233 479999999996 8999999999999999999999999999999987
Q ss_pred CccccccccccHhHHHHHH-HhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHH
Q 000999 675 PVVRAETLRFKKDGVFAVV-KDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVR 753 (1193)
Q Consensus 675 ~~~~~~d~~Fs~~~v~~~~-~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~ 753 (1193)
++ .++|++|+++.+.... ++++++++|.+.++...+.. .. .+..+. ...+..|+||+++++.+++.+.
T Consensus 365 ~~-~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~---~~-~~~~~~------~~~~~~d~~ll~~l~~~~~~v~ 433 (556)
T PRK12268 365 AP-ENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEK---YF-GGIVPP------GELGDEDRELIAEAEALFKEVG 433 (556)
T ss_pred CC-CCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHHHH---hc-CCcCCC------CcCCcccHHHHHHHHHHHHHHH
Confidence 55 5689999999876543 34667889976665544331 11 111121 1346789999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccC
Q 000999 754 QEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVG 833 (1193)
Q Consensus 754 ~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~ 833 (1193)
++|++|+|+.|++.+++|++ ++|||++..|+|.....+.+.+..+++++.++|+.+++||+|||||+||+||++|+.
T Consensus 434 ~~~~~~~~~~a~~~l~~~~~-~~n~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~-- 510 (556)
T PRK12268 434 ELLEAGEFKKALEEIMELAR-EANKYLDEKAPWKLAKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG-- 510 (556)
T ss_pred HHHHhhhHHHHHHHHHHHHH-HHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC--
Confidence 99999999999999999995 999999999987543333445567788888999999999999999999999999963
Q ss_pred CCCCCCeeeccCCCC
Q 000999 834 SGSEESIHFCSFPKE 848 (1193)
Q Consensus 834 ~~~~~SVh~~~~P~~ 848 (1193)
+++....||..
T Consensus 511 ----~~~~~~~w~~~ 521 (556)
T PRK12268 511 ----ENIEKLTWESL 521 (556)
T ss_pred ----CCCcccchhhh
Confidence 35666778764
No 31
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-80 Score=711.76 Aligned_cols=742 Identities=20% Similarity=0.311 Sum_probs=566.9
Q ss_pred CchHHHHHHHHHHHhcCCccccc--ccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccch
Q 000999 11 SFSREEEKILEFWNSIDAFKTQL--DRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDC 88 (1193)
Q Consensus 11 ~~~~~E~~~~~~W~~~~~f~~~~--~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~ 88 (1193)
.+.++|+++|+.|++.++|+.+. +..+++|+|+.+.|.||+||.||+||+++..--|+..-|+||+|++|+|++|++|
T Consensus 13 ~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHC 92 (1080)
T KOG0437|consen 13 SLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHC 92 (1080)
T ss_pred HHHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeeccccc
Confidence 36799999999999999999764 3446789999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH------cCCCC---------------------------c---------------chhhhcCH-----H
Q 000999 89 HGLPVENEIDKT------LGIKR---------------------------R---------------DDVFQMGI-----D 115 (1193)
Q Consensus 89 hGlpie~~v~k~------lg~~~---------------------------~---------------~~~~~~g~-----~ 115 (1193)
+|+||-..++|. +|-.+ + +.++.+|+ .
T Consensus 93 TGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~ 172 (1080)
T KOG0437|consen 93 TGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIK 172 (1080)
T ss_pred CCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhh
Confidence 999998777652 22111 0 12334442 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCC--hhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcc
Q 000999 116 KYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMD--LKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNF 193 (1193)
Q Consensus 116 ~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d--~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~ 193 (1193)
+|. .+..|..+|--.-.++++++|.-|||+|.|.|+| |.|..+|.|+|.+|.+.|.|..|.|-..|||..++++.||
T Consensus 173 ~F~-d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDH 251 (1080)
T KOG0437|consen 173 KFA-DPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDH 251 (1080)
T ss_pred ccc-ChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCccccc
Confidence 454 3556777777777899999999999999999986 8899999999999999999999999999999999999999
Q ss_pred cccccccccCCCe--EEEEeeecCC---------CCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEeh
Q 000999 194 EAGQNYKDVPDPE--IMVSFPIVGD---------PEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAE 262 (1193)
Q Consensus 194 Ev~~~y~~~~~~~--~~v~f~l~~~---------~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~ 262 (1193)
+...+ +...|. ..++..+.+. ....|++++|.||+|++|.++.+|+|+.+|...+.....+.||..+
T Consensus 252 DR~sG--EgV~PqeytliKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~ 329 (1080)
T KOG0437|consen 252 DRASG--EGVGPQEYTLIKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATE 329 (1080)
T ss_pred ccccC--CCCCcceEEEEEEEecccchhhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeeh
Confidence 97543 233333 3344443332 1238999999999999999999999999999988755567888877
Q ss_pred hhhhccCCCCCCCCCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccc-cCcccccc
Q 000999 263 SRLSALPSEKPKSSAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYE-PLFDYFKE 341 (1193)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~-Pl~~~~~~ 341 (1193)
..+..+-.++. .+. .+.+..+ .++.|.+|+|.... |+--
T Consensus 330 raa~NmsyQ~~----------------tk~-------------------~g~~~~~-~~i~G~~~iGa~l~aPlsv---- 369 (1080)
T KOG0437|consen 330 RAARNMSYQKL----------------TKE-------------------RGVVSCL-VTITGYDLIGAPLSAPLSV---- 369 (1080)
T ss_pred HHHhhcchhhc----------------ccc-------------------CCcccce-eeecchhhcCCcccCcchh----
Confidence 77776632111 011 1226666 79999999999985 6642
Q ss_pred cCCceEEEEecCccccCCCCCceeecCCCChhhHHHHHH-------cCCCccC-----CCcc------------------
Q 000999 342 FSDVAFRVIADNYVTSDSGTGIVHCAPAFGEDDYRVCIE-------NQIINKG-----ENLI------------------ 391 (1193)
Q Consensus 342 ~~~~~~~vi~~~~V~~~~GTGiVh~aPahg~~D~~~~~~-------~~l~~~~-----~~~~------------------ 391 (1193)
...+.+++..-|..+.|||+|.++|+..||||...+. |||-.+. -|++
T Consensus 370 --~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lK 447 (1080)
T KOG0437|consen 370 --YERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELK 447 (1080)
T ss_pred --hheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhhHHHHHHHHh
Confidence 3578999999999999999999999999999998854 3441110 0111
Q ss_pred --eeecC------------CCccc--cCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeC
Q 000999 392 --VAVDD------------DGCFT--GKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVP 455 (1193)
Q Consensus 392 --~~vd~------------~G~~~--~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~ 455 (1193)
++-|. .|.++ .-+|+|+|.+|.++.+.|-.+|.+.|.++...+.+. ++-.|||..||..+++
T Consensus 448 iqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEk--qVmSRSGdeCiVAL~D 525 (1080)
T KOG0437|consen 448 IQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEK--QVMSRSGDECIVALCD 525 (1080)
T ss_pred ccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHHhhhhHHHHHHHhcccceeecCcch--hhhccCCCceEEEecc
Confidence 11111 22222 236899999999999999999999999999877765 6889999999999999
Q ss_pred ccccccH--HHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEEEEecChHHHHHhh
Q 000999 456 SWFVRVE--TLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEIIVVDSVDKLEKLS 533 (1193)
Q Consensus 456 qWFi~~~--~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~~~v~s~~el~~l~ 533 (1193)
||||++. +||.++.++++.++-+.+..+ .-|..-|+++..|++||+-..||+||+ |.+.. | +.|+
T Consensus 526 QWYldYgE~eWKk~a~~cLe~l~~f~dEtR-~~fE~tLdWL~~wacsRsyGLGTrlPW----D~qyL--v------ESLS 592 (1080)
T KOG0437|consen 526 QWYLDYGEAEWKKQAKECLENLNTFSDETR-NGFEDTLDWLGQWACSRSYGLGTRLPW----DEQYL--V------ESLS 592 (1080)
T ss_pred chhhhcCcHHHHHHHHHHHhhhhccCHHHH-HHHHHHHHHHHhhhhhccccCCCCCCC----cHHHH--H------Hhcc
Confidence 9999996 799999999999865444445 568888999999999999999999995 32211 1 2222
Q ss_pred CCc-------cc-ccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCC----CChhhhhhcCCceeE
Q 000999 534 GEK-------IF-DLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPF----ENAEHFENNFPGQFI 601 (1193)
Q Consensus 534 g~~-------~~-dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~----~~~~~f~~~~Pad~~ 601 (1193)
..+ +. -||+..--... .+-|- .+-...++|+|.-|--+..|- ....|. +.+++|++|||.|++
T Consensus 593 DSTIYmAyYTvaHll~~d~~g~~~--~plgi--~~~QMtdeVwdYvF~~~~~~k-~t~i~~e~L~~lr~eF~Y~YPiDlr 667 (1080)
T KOG0437|consen 593 DSTIYMAYYTVAHLLHRDLYGKVE--GPLGI--KPDQMTDEVWDYVFLNEPYPK-NTAIPEEALSNLRREFEYFYPIDLR 667 (1080)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCc--ccCCC--ChhhcCHHHHHHhhccCCCCc-CCCccHHHHHHHHHhhhcccceeee
Confidence 222 11 13332111111 11111 122346678887776554332 122221 235789999999999
Q ss_pred EecccCccchHHHHHHHHHHccCCCCc-cEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccc
Q 000999 602 AEGLDQTRGWFYTLMVLSTALFGKPAF-RNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAE 680 (1193)
Q Consensus 602 ~~G~D~~r~Wf~~l~~~~~~l~~~~pf-k~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~ 680 (1193)
++|+|.+.+|...++..+++++.+.-| |.+.+|||++ .+++|||||.||+.+..+.|++||||+.|+.|+.++. ..+
T Consensus 668 vsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLm-LNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD-~ve 745 (1080)
T KOG0437|consen 668 VSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLM-LNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGD-GVE 745 (1080)
T ss_pred eccccccccceeEeeeehhhhcccccCccceeeCceEE-ecchhhccccCCeeeHHHHHHHhCccceeeeeecccC-Ccc
Confidence 999999999988888899999998777 9999999999 4999999999999999999999999999999998876 568
Q ss_pred cccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCC
Q 000999 681 TLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYR 760 (1193)
Q Consensus 681 d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~ 760 (1193)
|.||.+... +..+.+|++-..++...+........ .| .....||.+.+.+|.++....++++...
T Consensus 746 DANF~ea~A----nAaILRLyt~~ew~eEm~~~~s~Lrt---Gp--------~~~FaDrvf~nemN~~i~~t~~aye~~~ 810 (1080)
T KOG0437|consen 746 DANFVEANA----NAAILRLYTYVEWIEEMCENRSSLRT---GP--------ASTFADRVFENEMNALIAKTERAYEDTL 810 (1080)
T ss_pred cchhHHhcc----cHHHHHHHHHHHHHHHHHhhHHhhcc---Cc--------hhhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999988654 44677889988887766542211100 00 1236799999999999999999999999
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCC
Q 000999 761 LYTVVPYL-LKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEES 839 (1193)
Q Consensus 761 ~~~a~~~l-~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~S 839 (1193)
|..|++.- ++| ....++|-++.- +.. .-..++..+.+...||+||.||+||.||+.+.. ...|
T Consensus 811 fk~aLK~Gfyd~-qaArD~Yrel~g-----~~m------h~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~----~~~~ 874 (1080)
T KOG0437|consen 811 FKDALKYGFYDL-QAARDMYRELCG-----EGM------HRDLVFRFIETQTLLLAPICPHLAEYIWRTVLK----KNFS 874 (1080)
T ss_pred HHHHHHhhhHHH-HHHHHHHHHHhc-----ccc------cHHHHHHHHHHHHHHHhccchHHHHHHHHHhcc----CCce
Confidence 99999864 444 346788866543 111 124677789999999999999999999999874 4567
Q ss_pred eeeccCCCCcCC
Q 000999 840 IHFCSFPKEEGK 851 (1193)
Q Consensus 840 Vh~~~~P~~~~~ 851 (1193)
|+. .||.+++.
T Consensus 875 v~~-~wP~~s~~ 885 (1080)
T KOG0437|consen 875 VNV-GWPFVSPP 885 (1080)
T ss_pred eec-CCCCCCCH
Confidence 776 99998654
No 32
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=5.6e-81 Score=765.04 Aligned_cols=488 Identities=21% Similarity=0.324 Sum_probs=401.9
Q ss_pred EEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHH
Q 000999 42 YVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEAC 121 (1193)
Q Consensus 42 f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c 121 (1193)
|+|+.|||||||.|||||+++++++|+++||+||+|++|.+++|||+||+||+..+++ .|+++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~-~g~~~---------------- 63 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ-EGLTP---------------- 63 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHH-cCCCH----------------
Confidence 5789999999999999999999999999999999999999999999999999999986 57654
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccccccccc
Q 000999 122 RSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKD 201 (1193)
Q Consensus 122 ~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~ 201 (1193)
++++++|.+.+++++++|| |++|..++|+++.|.+.++++|.+|+++|++|++.+.++|||.|+|+|++.++..
T Consensus 64 ~e~~~~~~~~~~~~l~~Lg--I~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g---- 137 (530)
T TIGR00398 64 KELVDKYHEEFKDDWKWLN--ISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEG---- 137 (530)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcC----
Confidence 3488899999999999999 5567788999999999999999999999999999999999999999999765421
Q ss_pred cCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCC
Q 000999 202 VPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGP 281 (1193)
Q Consensus 202 ~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~ 281 (1193)
+.|
T Consensus 138 -----------------------------~cp------------------------------------------------ 140 (530)
T TIGR00398 138 -----------------------------TCP------------------------------------------------ 140 (530)
T ss_pred -----------------------------CCC------------------------------------------------
Confidence 000
Q ss_pred CCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCCC
Q 000999 282 GGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGT 361 (1193)
Q Consensus 282 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GT 361 (1193)
T Consensus 141 -------------------------------------------------------------------------------- 140 (530)
T TIGR00398 141 -------------------------------------------------------------------------------- 140 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeecCCCChhh--HHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccC
Q 000999 362 GIVHCAPAFGEDD--YRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSY 439 (1193)
Q Consensus 362 GiVh~aPahg~~D--~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~y 439 (1193)
.+|..| -.+|..+|. ..++..+..
T Consensus 141 -------~c~~~~~~g~~ce~cg~-----------------------------------------------~~~~~~l~~ 166 (530)
T TIGR00398 141 -------KCGSEDARGDHCEVCGR-----------------------------------------------HLEPTELIN 166 (530)
T ss_pred -------CCCCcccccchhhhccc-----------------------------------------------cCCHHHhcC
Confidence 000000 001111121 013334567
Q ss_pred CcccCCCCCeEEeeeCccccccHHHHHHHHHhhcC---CccccchhhhHhHHhhhhc-CCceeeccccC-CCCcccEEEc
Q 000999 440 PFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQ---TYWVPDYVKEKRFHNWLEN-ARDWAVSRSRF-WGTPLPVWTS 514 (1193)
Q Consensus 440 p~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~---~~~~P~~~~~~r~~~wl~~-l~DW~ISRqr~-WG~pIPiw~~ 514 (1193)
|+|+|||+|++++.++||||++++++++|++++++ ..+.|+.+ .+++.+||++ ++|||||||++ ||+|||.|
T Consensus 167 p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~-- 243 (530)
T TIGR00398 167 PRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNV-KNKAQNWLKGGLKDLAITRDLVYWGIPVPND-- 243 (530)
T ss_pred CccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHH-HHHHHHHHhCCCCCccccCcCCCCCeeCCCC--
Confidence 99999999999999999999999999999999974 44557764 4788999998 99999999999 99999964
Q ss_pred CCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhh
Q 000999 515 EDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFEN 594 (1193)
Q Consensus 515 ~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~ 594 (1193)
. ..|++||||+.+.+++..+++..+.+.|.+
T Consensus 244 --~-----------------------------------------------~~~~yvW~da~~~y~~~~~~~~~~~~~~~~ 274 (530)
T TIGR00398 244 --P-----------------------------------------------NKVVYVWFDALIGYISSLGILSGDTEDWKK 274 (530)
T ss_pred --C-----------------------------------------------CcEEEEeecchHHhHhhhccccCChhhHHH
Confidence 1 136889999988777777776545567999
Q ss_pred cCCce-----eEEecccCccch--HHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHH
Q 000999 595 NFPGQ-----FIAEGLDQTRGW--FYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADAL 667 (1193)
Q Consensus 595 ~~Pad-----~~~~G~D~~r~W--f~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDal 667 (1193)
+||++ +++.|+||+++| |+..++++. +.+||+++++||||+++ |+|||||+||+|+|.+++++||+|++
T Consensus 275 ~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~---~~~~~~~~~~~g~v~~~-g~KmSKS~Gn~i~~~d~i~~~g~D~l 350 (530)
T TIGR00398 275 WWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGL---GLPLPTQVFSHGYLTVE-GGKMSKSLGNVVDPSDLLARFGADIL 350 (530)
T ss_pred hCCCCCCceEEEEEecccchhHHHHHHHHHHhC---CCCCCCEEEeeccEEEC-CceecccCCceecHHHHHHHcCchHH
Confidence 99999 999999999986 443333443 34778999999999985 99999999999999999999999999
Q ss_pred HHhHhhCCccccccccccHhHHHHHH-HhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHH
Q 000999 668 RLYLINSPVVRAETLRFKKDGVFAVV-KDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQ 746 (1193)
Q Consensus 668 R~yL~~~~~~~~~d~~Fs~~~v~~~~-~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~ 746 (1193)
||||++.++ .++|++|+++.+.+.. ++.+++++|++.++...+... . ++..+.. ......|+|++++++
T Consensus 351 R~~l~~~~~-~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~---~-~~~~~~~-----~~~~~~d~~ll~~l~ 420 (530)
T TIGR00398 351 RYYLLKERP-LGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKY---F-NGVLPSE-----DITDEEDKKLLKLIN 420 (530)
T ss_pred HHHHhhCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-CCcCCCC-----cccchhhHHHHHHHH
Confidence 999998654 4789999999988765 446688999876665544321 1 1122211 123578999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000999 747 SLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALY 826 (1193)
Q Consensus 747 ~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~ 826 (1193)
++++.+.++|++|+|+.|++.+++|++ ++|+|++.+|+|...+++ ..+.+++++++++++.++++|+|||||+||+||
T Consensus 421 ~~~~~v~~a~e~~~~~~a~~~l~~l~~-~~n~Yi~~~kpw~~~~~~-~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~ 498 (530)
T TIGR00398 421 EALEQIDEAIESFEFRKALREIMKLAD-RGNKYIDENKPWELFKQS-PRLKELLAVCSMLIRVLSILLYPIMPKLSEKIL 498 (530)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHHHhcCCChhhcCCh-HHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 999999999999999999999999995 899999999998765433 356789999999999999999999999999999
Q ss_pred HHhhc
Q 000999 827 QNMRK 831 (1193)
Q Consensus 827 ~~L~~ 831 (1193)
++|+.
T Consensus 499 ~~L~~ 503 (530)
T TIGR00398 499 KFLNF 503 (530)
T ss_pred HHhCC
Confidence 99973
No 33
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-80 Score=775.25 Aligned_cols=465 Identities=20% Similarity=0.337 Sum_probs=395.5
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHH
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNE 119 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~ 119 (1193)
++|+++.|||||||.|||||++++++.|+++||+||+|++|.+++|+|+||+||+..+++ .|++++
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~-~g~~~~------------- 69 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK-AGKTPQ------------- 69 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHH-cCCCHH-------------
Confidence 579999999999999999999999999999999999999999999999999999998865 788754
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccccccc
Q 000999 120 ACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNY 199 (1193)
Q Consensus 120 ~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y 199 (1193)
+++++|.+.+++++++|| |++|.+++|+++.|.+.|+++|.+|+++|+||++...++|||.|+++|++.++
T Consensus 70 ---e~~d~~~~~fk~~l~~lg--I~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l---- 140 (648)
T PRK12267 70 ---EYVDEISAGFKELWKKLD--ISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQL---- 140 (648)
T ss_pred ---HHHHHHHHHHHHHHHHcC--CCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHh----
Confidence 488899999999999999 57788999999999999999999999999999999999999999988863221
Q ss_pred cccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCC
Q 000999 200 KDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAAN 279 (1193)
Q Consensus 200 ~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 279 (1193)
T Consensus 141 -------------------------------------------------------------------------------- 140 (648)
T PRK12267 141 -------------------------------------------------------------------------------- 140 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCC
Q 000999 280 GPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDS 359 (1193)
Q Consensus 280 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~ 359 (1193)
+
T Consensus 141 --------------------------------------~----------------------------------------- 141 (648)
T PRK12267 141 --------------------------------------V----------------------------------------- 141 (648)
T ss_pred --------------------------------------c-----------------------------------------
Confidence 0
Q ss_pred CCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccC
Q 000999 360 GTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSY 439 (1193)
Q Consensus 360 GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~y 439 (1193)
+ .
T Consensus 142 -----------------------------~-------------------------------------------------~ 143 (648)
T PRK12267 142 -----------------------------D-------------------------------------------------G 143 (648)
T ss_pred -----------------------------c-------------------------------------------------C
Confidence 0 1
Q ss_pred CcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCC-c-cccchhhhHhHH-hhhhc-CCceeecccc-CCCCcccEEEc
Q 000999 440 PFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQT-Y-WVPDYVKEKRFH-NWLEN-ARDWAVSRSR-FWGTPLPVWTS 514 (1193)
Q Consensus 440 p~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~-~-~~P~~~~~~r~~-~wl~~-l~DW~ISRqr-~WG~pIPiw~~ 514 (1193)
|+|+|||+|++++.++|||+++++++++|++++++. . |.|+..+ +++. +||++ ++|||||||| .||+|||.
T Consensus 144 ~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~-~~~~~~~l~~~l~D~~ISR~~~~WGipvP~--- 219 (648)
T PRK12267 144 GKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRK-NEMINNFIKPGLEDLSISRTSFDWGIPVPF--- 219 (648)
T ss_pred CcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHH-HHHHHHHhhCCCCCcccCCCCCCcceECCC---
Confidence 689999999999999999999999999999999764 3 4588754 6677 99997 9999999998 59999994
Q ss_pred CCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhh
Q 000999 515 EDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFEN 594 (1193)
Q Consensus 515 ~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~ 594 (1193)
+. ..|+||||||++.+++..+||.++.+.|++
T Consensus 220 -~~-----------------------------------------------~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~ 251 (648)
T PRK12267 220 -DP-----------------------------------------------KHVVYVWIDALLNYITALGYGSDDDELFKK 251 (648)
T ss_pred -CC-----------------------------------------------CCEEEEcccchHHHHHHcCCCCCCchHHHh
Confidence 10 248999999999999999998766677999
Q ss_pred cCCceeEEecccCccch--HHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHh
Q 000999 595 NFPGQFIAEGLDQTRGW--FYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI 672 (1193)
Q Consensus 595 ~~Pad~~~~G~D~~r~W--f~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~ 672 (1193)
+||+|++++|+||+||| |+..+.++ .+.+||++|++|||+++ +|+|||||+||+|+|.+++++||+|++||||+
T Consensus 252 ~wp~~~~~~GkDii~fH~i~wpa~l~~---~~~~~p~~v~~hg~l~~-eg~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~ 327 (648)
T PRK12267 252 FWPADVHLVGKDILRFHAIYWPIMLMA---LGLPLPKKVFAHGWWLM-KDGKMSKSKGNVVDPEELVDRYGLDALRYYLL 327 (648)
T ss_pred hcccceEEEeeeecchhHHHHHHHHHh---CCCCCCcEEEecceEEE-CCceecccCCcccCHHHHHHHcCCcHHHHHHH
Confidence 99999999999999975 43333333 24678999999999997 79999999999999999999999999999999
Q ss_pred hCCccccccccccHhHHHHHHHh-hhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHH
Q 000999 673 NSPVVRAETLRFKKDGVFAVVKD-VFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHF 751 (1193)
Q Consensus 673 ~~~~~~~~d~~Fs~~~v~~~~~~-~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~ 751 (1193)
++.+ .++|.+|+++.+.+.+++ +.++|+|.+..+...+.. ..+ +..|.. ...+..|+|++++++++++.
T Consensus 328 ~~~~-~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~---~~~-~~~p~~-----~~~~~~D~~ll~~l~~~~~~ 397 (648)
T PRK12267 328 REVP-FGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINK---YFD-GEIPAP-----GNVTEFDEELIALAEETLKN 397 (648)
T ss_pred hcCC-CCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hcC-CcCCCC-----CCCchhhHHHHHHHHHHHHH
Confidence 7655 578999999998765554 456777765554443321 111 222211 13467899999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCC--ChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 000999 752 VRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRS--GEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNM 829 (1193)
Q Consensus 752 v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~--~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L 829 (1193)
+.++|++|+|++|++.+++|++ ++|+|++.+++|....+ ..++..+++++++++|+.+++||+|||||+||+||++|
T Consensus 398 v~~~~e~~~~~~al~~i~~~~~-~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~L 476 (648)
T PRK12267 398 YEELMEELQFSRALEEVWKLIS-RANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQL 476 (648)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH-HHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHc
Confidence 9999999999999999999986 79999999999754332 33456678899999999999999999999999999999
Q ss_pred hc
Q 000999 830 RK 831 (1193)
Q Consensus 830 ~~ 831 (1193)
+.
T Consensus 477 g~ 478 (648)
T PRK12267 477 GL 478 (648)
T ss_pred CC
Confidence 84
No 34
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.5e-79 Score=745.68 Aligned_cols=468 Identities=20% Similarity=0.309 Sum_probs=399.1
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHH
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNE 119 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~ 119 (1193)
++|++++|||||||.||+||+++++++|+++||+||+|++|.+++|+|+||+||+..+++ .|+++.
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~-~g~~~~------------- 66 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEE-AGISPQ------------- 66 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHH-cCCCHH-------------
Confidence 369999999999999999999999999999999999999999999999999999999865 687653
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccccccc
Q 000999 120 ACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNY 199 (1193)
Q Consensus 120 ~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y 199 (1193)
+++.+|..++++++++|| |++|.++.|+++.|++.|+++|.+|+++|++|++.+.++||++|+|+|++.|+.
T Consensus 67 ---~~~~~~~~~~~~~l~~l~--I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~--- 138 (511)
T PRK11893 67 ---ELADRNSAAFKRLWEALN--ISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI--- 138 (511)
T ss_pred ---HHHHHHHHHHHHHHHHhC--CCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc---
Confidence 478889999999999999 678888999999999999999999999999999999999999999988744320
Q ss_pred cccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCC
Q 000999 200 KDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAAN 279 (1193)
Q Consensus 200 ~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 279 (1193)
T Consensus 139 -------------------------------------------------------------------------------- 138 (511)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCC
Q 000999 280 GPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDS 359 (1193)
Q Consensus 280 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~ 359 (1193)
. |
T Consensus 139 -------------~----------------------------------------~------------------------- 140 (511)
T PRK11893 139 -------------E----------------------------------------D------------------------- 140 (511)
T ss_pred -------------C----------------------------------------C-------------------------
Confidence 0 0
Q ss_pred CCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccC
Q 000999 360 GTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSY 439 (1193)
Q Consensus 360 GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~y 439 (1193)
.
T Consensus 141 -------------------------------------------------------------------------------~ 141 (511)
T PRK11893 141 -------------------------------------------------------------------------------G 141 (511)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CcccCCCCCeEEeeeCccccccHHHHHHHHHhhcC-Ccc-ccchhhhHhHHhhhhc-CCceeecc-ccCCCCcccEEEcC
Q 000999 440 PFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQ-TYW-VPDYVKEKRFHNWLEN-ARDWAVSR-SRFWGTPLPVWTSE 515 (1193)
Q Consensus 440 p~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~-~~~-~P~~~~~~r~~~wl~~-l~DW~ISR-qr~WG~pIPiw~~~ 515 (1193)
|+|||||+|++++.++|||++++++++++.+.+++ ..| .|+.. .+++.+||++ ++|||||| |++||+|+|.+
T Consensus 142 p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~-~~~~~~~l~~~~~D~~isR~~~~WGipiP~~--- 217 (511)
T PRK11893 142 YRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASR-RNEVISFVKSGLKDLSISRTNFDWGIPVPGD--- 217 (511)
T ss_pred CCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHH-HHHHHHHHHCCCCCcccCCCCCCCCccCCCC---
Confidence 79999999999999999999999999999999876 555 58875 4778899985 99999999 99999999941
Q ss_pred CCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCCh---hhh
Q 000999 516 DGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENA---EHF 592 (1193)
Q Consensus 516 ~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~---~~f 592 (1193)
...+++|||||+++|++..++|.++. +.|
T Consensus 218 ------------------------------------------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~ 249 (511)
T PRK11893 218 ------------------------------------------------PKHVIYVWFDALTNYLTALGYPDDEELLAELF 249 (511)
T ss_pred ------------------------------------------------CCceEEEEecCcHHHHhHhccccccccchhHH
Confidence 01478899999999999999997543 468
Q ss_pred hhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHh
Q 000999 593 ENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLI 672 (1193)
Q Consensus 593 ~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~ 672 (1193)
.++||+|++++|+||+++|.....+++.++..+.| +++++|||+++ +|+|||||+||+|+|.+++++||+|++||||+
T Consensus 250 ~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p-~~~~~~g~v~~-~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll 327 (511)
T PRK11893 250 NKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLP-KRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLL 327 (511)
T ss_pred HhcCCCcceEecccccccchhHHHHHHHhCCCCCC-CEEEeeccEEE-CCeeecccCCcEEcHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999998877777777755566 99999999996 89999999999999999999999999999999
Q ss_pred hCCccccccccccHhHHHHHHHh-hhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHH
Q 000999 673 NSPVVRAETLRFKKDGVFAVVKD-VFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHF 751 (1193)
Q Consensus 673 ~~~~~~~~d~~Fs~~~v~~~~~~-~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~ 751 (1193)
++++ ..+|++|+++.+.+..+. +.++++|.+..+...+. ...++..|.. ......|+|++++++.+++.
T Consensus 328 ~~~~-~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~----~~~~~~~~~~-----~~~~~~d~~l~~~l~~~~~~ 397 (511)
T PRK11893 328 REIP-FGQDGDFSREAFINRINADLANDLGNLAQRTLSMIA----KNFDGKVPEP-----GALTEADEALLEAAAALLER 397 (511)
T ss_pred hcCC-CCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCCCCC-----cccchhhHHHHHHHHHHHHH
Confidence 8754 468999999998765554 44566775543332221 1111222321 12456799999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhc
Q 000999 752 VRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRK 831 (1193)
Q Consensus 752 v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~ 831 (1193)
+.++|++|+++.|++.+++|++ .+|+|++.+|+|....++.+.+.+++.+++++++.+++||+|||||+||+||+.|+.
T Consensus 398 v~~~~~~~~~~~a~~~l~~l~~-~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 398 VRAAMDNLAFDKALEAILALVR-AANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH-HHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 9999999999999999999996 589999999987544434556788999999999999999999999999999999973
No 35
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.1e-77 Score=743.87 Aligned_cols=486 Identities=19% Similarity=0.238 Sum_probs=384.4
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHH
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNE 119 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~ 119 (1193)
++|+|+.|||||||.|||||+++++++|+++||+||+|++|.+++|||+||+||+..+++ .|+++.
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~-~g~~p~------------- 67 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK-EGITPE------------- 67 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH-cCCCHH-------------
Confidence 358999999999999999999999999999999999999999999999999999999986 687764
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccccccc
Q 000999 120 ACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNY 199 (1193)
Q Consensus 120 ~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y 199 (1193)
+++++|++.+++++++|| |++|.+++|+++.|++.|+++|.+|+++|+||++..+++|||.|+|+|++..+..
T Consensus 68 ---e~~~~~~~~~~~~~~~l~--i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g-- 140 (673)
T PRK00133 68 ---ELIARYHAEHKRDFAGFG--ISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKG-- 140 (673)
T ss_pred ---HHHHHHHHHHHHHHHHhC--CCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheec--
Confidence 388999999999999999 5677799999999999999999999999999999999999999999999654310
Q ss_pred cccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCC
Q 000999 200 KDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAAN 279 (1193)
Q Consensus 200 ~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 279 (1193)
|.|. |..++
T Consensus 141 ---------------------------~cp~--------C~~~d------------------------------------ 149 (673)
T PRK00133 141 ---------------------------TCPK--------CGAED------------------------------------ 149 (673)
T ss_pred ---------------------------ccCC--------CCCcc------------------------------------
Confidence 1110 00000
Q ss_pred CCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCC
Q 000999 280 GPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDS 359 (1193)
Q Consensus 280 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~ 359 (1193)
..
T Consensus 150 ------------------------------------------------------------------------------~~ 151 (673)
T PRK00133 150 ------------------------------------------------------------------------------QY 151 (673)
T ss_pred ------------------------------------------------------------------------------cC
Confidence 00
Q ss_pred CCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccC
Q 000999 360 GTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSY 439 (1193)
Q Consensus 360 GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~y 439 (1193)
|+ .|..+|. ++...++. .
T Consensus 152 g~---------------~ce~cg~---------------------------------------------~~~~~~l~--~ 169 (673)
T PRK00133 152 GD---------------NCEVCGA---------------------------------------------TYSPTELI--N 169 (673)
T ss_pred Cc---------------hhhhccc---------------------------------------------cCChHhhc--C
Confidence 10 0111111 11111111 2
Q ss_pred CcccCCCCCeEEeeeCccccccHHHHHHHHHhhcC-CccccchhhhHhHHhhhh-cCCceeeccccCC-CCcccEEEcCC
Q 000999 440 PFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQ-TYWVPDYVKEKRFHNWLE-NARDWAVSRSRFW-GTPLPVWTSED 516 (1193)
Q Consensus 440 p~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~-~~~~P~~~~~~r~~~wl~-~l~DW~ISRqr~W-G~pIPiw~~~~ 516 (1193)
|+|++||+|++++.++||||++++++++|++.+++ ..| |+.++ +.+.+||+ +++|||||||+.| |+|+| .+
T Consensus 170 ~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~~~~-~~~~~~l~~~l~d~~ISR~~~W~GipvP----~~ 243 (673)
T PRK00133 170 PKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGEL-QPNVA-NKMKEWLEEGLQDWDISRDAPYFGFEIP----GA 243 (673)
T ss_pred CccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHHhCCCcccceeeeCCccceECC----CC
Confidence 89999999999999999999999999999999864 567 77754 78899997 5999999999999 99999 23
Q ss_pred CCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccc-cCCCC-Chhhhhh
Q 000999 517 GEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYI-HYPFE-NAEHFEN 594 (1193)
Q Consensus 517 ~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~-~~p~~-~~~~f~~ 594 (1193)
.+++ +++|||.-..+.+.. +|+.. +.+.|+.
T Consensus 244 ~~~~-----------------------------------------------iyVW~dal~~Yl~~~~~~~~~~~~~~~~~ 276 (673)
T PRK00133 244 PGKV-----------------------------------------------FYVWLDAPIGYISSTKNLCDKRGGLDWDE 276 (673)
T ss_pred CCeE-----------------------------------------------EEEcccchhhhhHHHhhhcccccchhHHH
Confidence 3344 445555433332222 34321 2345777
Q ss_pred cCCce-----eEEecccCccc----hHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChh
Q 000999 595 NFPGQ-----FIAEGLDQTRG----WFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGAD 665 (1193)
Q Consensus 595 ~~Pad-----~~~~G~D~~r~----Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaD 665 (1193)
|||.+ +++.|+|+++| |+++|++. +-+++++|++||||++ +|+|||||+||+|+|.++|++||+|
T Consensus 277 ~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~-----g~~lP~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie~ygaD 350 (673)
T PRK00133 277 YWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGA-----GYRLPTNVFAHGFLTV-EGAKMSKSRGTFIWARTYLDHLDPD 350 (673)
T ss_pred hcCCCCCceEEEEEeecchhHHHHHHHHHHHhC-----CCCCCCEEeeeccEEe-cCCcccccCCcccCHHHHHHHcCch
Confidence 88432 89999999996 45555442 3456699999999998 9999999999999999999999999
Q ss_pred HHHHhHhhCCcccc-ccccccHhHHHHHHH-hhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHH
Q 000999 666 ALRLYLINSPVVRA-ETLRFKKDGVFAVVK-DVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINS 743 (1193)
Q Consensus 666 alR~yL~~~~~~~~-~d~~Fs~~~v~~~~~-~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils 743 (1193)
++||||++.++ .+ +|.+|+++.+....+ +++++++|.+.++...+.. ..+ +.. .....|+|+++
T Consensus 351 alR~~ll~~~~-~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k---~~~-~~~---------~~~~~d~~ll~ 416 (673)
T PRK00133 351 YLRYYLAAKLP-ETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINK---RFD-GKL---------PDALADPELLE 416 (673)
T ss_pred HHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC-CCC---------CCCcccHHHHH
Confidence 99999997765 46 899999998765434 4678888877665544321 111 111 12456999999
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Q 000999 744 ATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTE 823 (1193)
Q Consensus 744 ~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaE 823 (1193)
+++.+++.+.++|++|+|+.|++.+++|++ ++|+|++.+++|....++.+++.+++++++++++.+++||+|||||+||
T Consensus 417 ~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~-~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae 495 (673)
T PRK00133 417 EFEAAAEKIAEAYEAREFRKALREIMALAD-FANKYVDDNEPWKLAKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAE 495 (673)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhChhchHHH
Confidence 999999999999999999999999999985 8999999999974333344556788899999999999999999999999
Q ss_pred HHHHHhhc
Q 000999 824 ALYQNMRK 831 (1193)
Q Consensus 824 ei~~~L~~ 831 (1193)
+||++|+.
T Consensus 496 ~i~~~Lg~ 503 (673)
T PRK00133 496 RAEAFLNL 503 (673)
T ss_pred HHHHHhCC
Confidence 99999984
No 36
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=1.9e-76 Score=739.23 Aligned_cols=500 Identities=17% Similarity=0.254 Sum_probs=385.5
Q ss_pred CCCCcEEEEcCCCCCCCccchhHHHh-hHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHH
Q 000999 37 RCQPEYVFYDGPPFATGLPHYGHILA-GTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGID 115 (1193)
Q Consensus 37 ~~~~~f~~~~gPP~~nG~lH~GH~~~-~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~ 115 (1193)
.++++|+|+.|||||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||+||+..+++ .|+++
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~-~g~~p---------- 82 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE-ENCTP---------- 82 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH-cCCCH----------
Confidence 46678999999999999999999997 6779999999999999999999999999999999986 67754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccc
Q 000999 116 KYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEA 195 (1193)
Q Consensus 116 ~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev 195 (1193)
++++++|++.+++++++|| |+||++++|++|.|.+.||++|.+|+++|+||++.+.++|||+|+|+|++..|
T Consensus 83 ------~e~~d~~~~~~~~~~~~l~--i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v 154 (801)
T PLN02610 83 ------KEICDKYHAIHKEVYDWFD--ISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLV 154 (801)
T ss_pred ------HHHHHHHHHHHHHHHHHcC--CccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHh
Confidence 4589999999999999999 88889999999999999999999999999999999999999999999997765
Q ss_pred cccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCC
Q 000999 196 GQNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKS 275 (1193)
Q Consensus 196 ~~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~ 275 (1193)
.. | |-++. + +
T Consensus 155 ~G-----------------------------~-----------CP~~~------------------------C-~----- 164 (801)
T PLN02610 155 EG-----------------------------T-----------CPTEG------------------------C-N----- 164 (801)
T ss_pred cC-----------------------------c-----------CCccc------------------------c-C-----
Confidence 21 0 00000 0 0
Q ss_pred CCCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCcc
Q 000999 276 SAANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYV 355 (1193)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V 355 (1193)
++
T Consensus 165 ---------------------------------------~~--------------------------------------- 166 (801)
T PLN02610 165 ---------------------------------------YD--------------------------------------- 166 (801)
T ss_pred ---------------------------------------cc---------------------------------------
Confidence 00
Q ss_pred ccCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccc
Q 000999 356 TSDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSL 435 (1193)
Q Consensus 356 ~~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~ 435 (1193)
+|.|. .|..+|- .. .+.
T Consensus 167 ------------~a~Gd----~Ce~Cg~---------------------------------------------~~--~p~ 183 (801)
T PLN02610 167 ------------SARGD----QCEKCGK---------------------------------------------LL--NPT 183 (801)
T ss_pred ------------ccccc----hhhhccc---------------------------------------------cC--Chh
Confidence 00010 1222221 00 112
Q ss_pred cccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhh--HhHHhhhh-cCCceeeccccCCCCcccEE
Q 000999 436 THSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKE--KRFHNWLE-NARDWAVSRSRFWGTPLPVW 512 (1193)
Q Consensus 436 ~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~--~r~~~wl~-~l~DW~ISRqr~WG~pIPiw 512 (1193)
++..|+|++||+|++++.++|||+++++++++|++++++....|.+... ....+||+ +++||||||+..||+|+|.-
T Consensus 184 eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~ 263 (801)
T PLN02610 184 ELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLE 263 (801)
T ss_pred hhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCC
Confidence 2335999999999999999999999999999999999753333443221 34558997 59999999999999999940
Q ss_pred EcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccc-cCCCCChhh
Q 000999 513 TSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYI-HYPFENAEH 591 (1193)
Q Consensus 513 ~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~-~~p~~~~~~ 591 (1193)
...++ |+.||||.-+-..+.. +|. +.
T Consensus 264 --~~~~~-----------------------------------------------v~YVWfDAl~~Yis~~~~~~----~~ 290 (801)
T PLN02610 264 --KYKDK-----------------------------------------------VFYVWFDAPIGYVSITACYT----PE 290 (801)
T ss_pred --CCCCc-----------------------------------------------EEEEehhhHHHHHHHHhhhh----hH
Confidence 00222 5667777433222222 443 24
Q ss_pred hhhcCCc--e---eEEecccCccch----HHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhh-
Q 000999 592 FENNFPG--Q---FIAEGLDQTRGW----FYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIND- 661 (1193)
Q Consensus 592 f~~~~Pa--d---~~~~G~D~~r~W----f~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~- 661 (1193)
|+.|||. + +++.|+||++|| ..+|++.+. .-+++++|++|||++ .+|+|||||+||+|+|.++++.
T Consensus 291 ~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~---~~~~p~~i~~~g~l~-~eG~KMSKS~GNvV~p~~~i~~~ 366 (801)
T PLN02610 291 WEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE---NWTMMKTISVTEYLN-YEGGKFSKSKGVGVFGNDAKDTN 366 (801)
T ss_pred HHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCC---CcCCCCEEEeccCEe-cCCceecCcCCcccCHHHHHhcc
Confidence 7889976 6 899999999984 344333221 013568999999988 5999999999999999999996
Q ss_pred cChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhh----hcCCCCCCchhhhhhcCCchh
Q 000999 662 YGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEI----EGGAPFIPLDLATLQKSSNVL 737 (1193)
Q Consensus 662 yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~ 737 (1193)
||+|++||||++..+ .++|.+|+++.+.+.++.. |.|.++++++++..+.. ...++..|.... .....+
T Consensus 367 yg~D~lRyyLl~~~p-~~~D~dFs~~~f~~~~Nsd---L~n~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~---~~~~~~ 439 (801)
T PLN02610 367 IPVEVWRYYLLTNRP-EVSDTLFTWADLQAKLNSE---LLNNLGNFINRVLSFIAKPPGAGYGSVIPDAPG---AESHPL 439 (801)
T ss_pred CCchHhHHHhhhcCC-CCCCCcCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhccCCcCCCccc---cccchh
Confidence 999999999998766 5799999999998776652 34555556666554433 112233332111 123467
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCC
Q 000999 738 DQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPF 817 (1193)
Q Consensus 738 D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf 817 (1193)
|+|++++++++++.+.++|++|+|+.|++.+++|++ ++||||+.+++|-....+.+++.++++++.++|+.+++||+||
T Consensus 440 d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~-~~NkYIe~~kPW~L~k~d~~~l~~vl~~~le~lr~la~LL~Pf 518 (801)
T PLN02610 440 TKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISS-EGNAYLQESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPF 518 (801)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHHHhcCchhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999864 8999999999974322334456778899999999999999999
Q ss_pred chhHHHHHHHHhhc
Q 000999 818 TPFFTEALYQNMRK 831 (1193)
Q Consensus 818 ~PfiaEei~~~L~~ 831 (1193)
||++||+||++|+.
T Consensus 519 mP~~aeeI~~~Lg~ 532 (801)
T PLN02610 519 MPSFSKEVLKQLNL 532 (801)
T ss_pred ccHHHHHHHHHhCC
Confidence 99999999999983
No 37
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=8.4e-77 Score=685.33 Aligned_cols=338 Identities=60% Similarity=1.204 Sum_probs=314.0
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHH
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNE 119 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~ 119 (1193)
++|+|++|||||||.||+||+++++++|+++||+||+||+|.+++||||||+|||.+++|++|++++..+.++|+++|++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999989999888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccccccc
Q 000999 120 ACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNY 199 (1193)
Q Consensus 120 ~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y 199 (1193)
.|++++++|.+++++++++||+|+||+++|.|+++.|++.++++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999998665555
Q ss_pred cccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCC
Q 000999 200 KDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAAN 279 (1193)
Q Consensus 200 ~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 279 (1193)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCC
Q 000999 280 GPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDS 359 (1193)
Q Consensus 280 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~ 359 (1193)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccC
Q 000999 360 GTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSY 439 (1193)
Q Consensus 360 GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~y 439 (1193)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCE
Q 000999 440 PFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEE 519 (1193)
Q Consensus 440 p~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~ 519 (1193)
|+++++++||||+++++++++++.+++++|+|+..+ +++.+||++++||||||||+||||||+|+|++++.
T Consensus 144 --------~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~-~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~ 214 (338)
T cd00818 144 --------PLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVK-NRFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGE 214 (338)
T ss_pred --------EEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHHHH-HHHHHHHhcchhcceeeecccCceeeEEEecCCCe
Confidence 334566789999999999999999999999999865 69999999999999999999999999999987765
Q ss_pred EEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCce
Q 000999 520 IIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQ 599 (1193)
Q Consensus 520 ~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad 599 (1193)
+++ .++++|+|+|||||+++++..+||.++ ++|+++||+|
T Consensus 215 ~~~---------------------------------------~~~~~v~~vWfda~~~~~~~~~~~~~~-~~~~~~~p~d 254 (338)
T cd00818 215 VLV---------------------------------------RRVPDVLDVWFDSGSMPYAQLHYPFEN-EDFEELFPAD 254 (338)
T ss_pred EEE---------------------------------------ecCCceEEEEEeCCCCHHHHcCCCCcc-hhhhccCCCe
Confidence 432 346789999999999999999998643 5799999999
Q ss_pred eEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCcccc
Q 000999 600 FIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRA 679 (1193)
Q Consensus 600 ~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~ 679 (1193)
++++|+||+|+||+++++.++++.+..||+++++||++++.+|+|||||+||+|+|.+++++||+|++||||+++++ .+
T Consensus 255 ~~~~GkDii~~wf~~~~~~~~~~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~-~~ 333 (338)
T cd00818 255 FILEGSDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDV-YA 333 (338)
T ss_pred EEeecchHHhHHHHHHHHHHHHhcCCCccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCC-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765 57
Q ss_pred ccccc
Q 000999 680 ETLRF 684 (1193)
Q Consensus 680 ~d~~F 684 (1193)
+|++|
T Consensus 334 ~d~~~ 338 (338)
T cd00818 334 EDLRF 338 (338)
T ss_pred CCCCC
Confidence 88876
No 38
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.2e-74 Score=704.13 Aligned_cols=465 Identities=19% Similarity=0.286 Sum_probs=371.6
Q ss_pred CCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHH
Q 000999 38 CQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKY 117 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f 117 (1193)
.+++|+|++|||||||.|||||+++++++|+++||+||+||+|.+++|||+||+||+.++++ .|+++.
T Consensus 67 ~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~-~g~~p~----------- 134 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAA-NGRNPP----------- 134 (616)
T ss_pred CCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHH-cCCChH-----------
Confidence 46779999999999999999999999999999999999999999999999999999999875 687653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccccc
Q 000999 118 NEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQ 197 (1193)
Q Consensus 118 ~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~ 197 (1193)
++|++|+..+++++++|| |+||++++|++|.|.+.|+++|.+|+++|+||++.++++|||+|++.+.+.|+
T Consensus 135 -----e~~~~~~~~~~~~~~~l~--I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l-- 205 (616)
T PLN02224 135 -----EHCDIISQSYRTLWKDLD--IAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKEL-- 205 (616)
T ss_pred -----HHHHHHHHHHHHHHHHcC--CCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHH--
Confidence 367778888999999999 69999999999999999999999999999999999999999999975542111
Q ss_pred cccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCC
Q 000999 198 NYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSA 277 (1193)
Q Consensus 198 ~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 277 (1193)
T Consensus 206 -------------------------------------------------------------------------------- 205 (616)
T PLN02224 206 -------------------------------------------------------------------------------- 205 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCcccc
Q 000999 278 ANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTS 357 (1193)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~ 357 (1193)
++
T Consensus 206 --------------------------------------------------~~---------------------------- 207 (616)
T PLN02224 206 --------------------------------------------------LE---------------------------- 207 (616)
T ss_pred --------------------------------------------------cC----------------------------
Confidence 00
Q ss_pred CCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccc
Q 000999 358 DSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTH 437 (1193)
Q Consensus 358 ~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h 437 (1193)
T Consensus 208 -------------------------------------------------------------------------------- 207 (616)
T PLN02224 208 -------------------------------------------------------------------------------- 207 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcC-Cc-cccchhhhHhHHhhhhc-CCceeecccc-CCCCcccEEE
Q 000999 438 SYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQ-TY-WVPDYVKEKRFHNWLEN-ARDWAVSRSR-FWGTPLPVWT 513 (1193)
Q Consensus 438 ~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~-~~-~~P~~~~~~r~~~wl~~-l~DW~ISRqr-~WG~pIPiw~ 513 (1193)
-+.|..||+|++++.+++||+++++++++|+++++. .. +.|+..+ +...+||++ ++||||||++ .||+|+|.
T Consensus 208 -~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~-~~~~~~l~~gL~d~~ISR~~~~WGIpvP~-- 283 (616)
T PLN02224 208 -NNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRL-NEVQSWIKSGLRDFSISRALVDWGIPVPD-- 283 (616)
T ss_pred -CCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHH-HHHHHHHhcCCCCccccCCCCCCceECCC--
Confidence 034677899999999999999999999999999864 33 4577643 567899985 9999999987 69999993
Q ss_pred cCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCC---hh
Q 000999 514 SEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFEN---AE 590 (1193)
Q Consensus 514 ~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~---~~ 590 (1193)
+.++++|||. +++.|+ .+..+++... ..
T Consensus 284 --~~~~viYVWf----DAl~~Y-------------------------------------------ls~~~~~~~~~~~~~ 314 (616)
T PLN02224 284 --DDKQTIYVWF----DALLGY-------------------------------------------ISALTEDNKQQNLET 314 (616)
T ss_pred --CCCcEEEEeh----hhHHHH-------------------------------------------HHHhcccccccccch
Confidence 4556666653 222222 1112222110 01
Q ss_pred hhhhcCCceeEEecccCccc----hHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhH
Q 000999 591 HFENNFPGQFIAEGLDQTRG----WFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADA 666 (1193)
Q Consensus 591 ~f~~~~Pad~~~~G~D~~r~----Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDa 666 (1193)
.|..+||.++++.|+|+++| |+..+++. +-.+++++++|||++ .+|+|||||+||+|+|.+++++||+|+
T Consensus 315 ~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~-----g~~~P~~i~~~g~l~-~eG~KMSKS~GN~i~p~e~l~~ygaD~ 388 (616)
T PLN02224 315 AVSFGWPASLHLIGKDILRFHAVYWPAMLMSA-----GLELPKMVFGHGFLT-KDGMKMGKSLGNTLEPFELVQKFGPDA 388 (616)
T ss_pred hhccCCCcceEEEeecccccHHHHHHHHHHHC-----CCCCCcEEEecccEe-cCCccccccCCccCCHHHHHHHcCcHH
Confidence 24457899999999999997 45544432 335569999999975 699999999999999999999999999
Q ss_pred HHHhHhhCCccccccccccHhHHHHHHH-hhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHH
Q 000999 667 LRLYLINSPVVRAETLRFKKDGVFAVVK-DVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSAT 745 (1193)
Q Consensus 667 lR~yL~~~~~~~~~d~~Fs~~~v~~~~~-~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l 745 (1193)
+||||++.++ .++|.+|+++.+.+.++ +.++.++|.+.++...+.. .. ++..|.. ......|.|+++++
T Consensus 389 ~R~yLl~~~p-~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k---~~-~~~~~~~-----~~~~~~d~~l~~~l 458 (616)
T PLN02224 389 VRYFFLREVE-FGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKK---NC-ESTLVED-----STVAAEGVPLKDTV 458 (616)
T ss_pred HHHHHHhcCC-CcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc-CCcCCCc-----cccccccHHHHHHH
Confidence 9999998765 67899999998765543 3556677765554443332 11 1222211 01234589999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccc--cCCC-ChHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 000999 746 QSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRL--KGRS-GEDDCRIALSTLYNVLLTSCKVMAPFTPFFT 822 (1193)
Q Consensus 746 ~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl--~~~~-~~~~~~~a~~tL~~vL~~l~~LLaPf~Pfia 822 (1193)
+++++.+.++|++|+|++|++.+++|++ .+|||++..+||. +.+. ..++..+++++++++|+.+++||+|||||+|
T Consensus 459 ~~li~~v~~~me~~~~~~Al~~i~el~~-~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~A 537 (616)
T PLN02224 459 EKLVEKAQTNYENLSLSSACEAVLEIGN-AGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLS 537 (616)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 9999999999999999999999999984 7999999999984 4332 1234567788999999999999999999999
Q ss_pred HHHHHHhhc
Q 000999 823 EALYQNMRK 831 (1193)
Q Consensus 823 Eei~~~L~~ 831 (1193)
|+||++|+.
T Consensus 538 e~I~~~Lg~ 546 (616)
T PLN02224 538 LRIYSQLGY 546 (616)
T ss_pred HHHHHHhCC
Confidence 999999974
No 39
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-72 Score=671.29 Aligned_cols=493 Identities=22% Similarity=0.318 Sum_probs=404.2
Q ss_pred CCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHH
Q 000999 39 QPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYN 118 (1193)
Q Consensus 39 ~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~ 118 (1193)
.++|+|+.|+|||||.||+||+++++.+||++||+||+|++|++..|+|.||+||+.++++ +|++|++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~-~g~tP~e----------- 71 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK-EGITPQE----------- 71 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHH-cCCCHHH-----------
Confidence 4679999999999999999999999999999999999999999999999999999999986 7998864
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCccccccc
Q 000999 119 EACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQN 198 (1193)
Q Consensus 119 ~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~ 198 (1193)
+|++|+..++++++.|+ |+||++.+|+++.|.+.|+.+|.+|+++|+||.+...++||++|++.|.|.+|...
T Consensus 72 -----l~d~~~~~~~~~~~~l~--IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~ 144 (558)
T COG0143 72 -----LVDKNHEEFKELFKALN--ISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGT 144 (558)
T ss_pred -----HHHHHHHHHHHHHHHhC--CcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheecc
Confidence 88999999999999999 89999999999999999999999999999999999999999999999998776320
Q ss_pred ccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCC
Q 000999 199 YKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAA 278 (1193)
Q Consensus 199 y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~ 278 (1193)
+ |.
T Consensus 145 -----------------c-------------------------p~----------------------------------- 147 (558)
T COG0143 145 -----------------C-------------------------PK----------------------------------- 147 (558)
T ss_pred -----------------C-------------------------CC-----------------------------------
Confidence 0 00
Q ss_pred CCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecc--cccccccccCcccccccCCceEEEEecCccc
Q 000999 279 NGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGA--YLVGKKYEPLFDYFKEFSDVAFRVIADNYVT 356 (1193)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~--~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~ 356 (1193)
|+ + +...|. |-+|..|.|.
T Consensus 148 ----------------cg------------------~----~~arGD~Ce~Cg~~~~P~--------------------- 168 (558)
T COG0143 148 ----------------CG------------------G----EDARGDQCENCGRTLDPT--------------------- 168 (558)
T ss_pred ----------------cC------------------c----cccCcchhhhccCcCCch---------------------
Confidence 00 0 000111 1122222221
Q ss_pred cCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeecccc
Q 000999 357 SDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLT 436 (1193)
Q Consensus 357 ~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~ 436 (1193)
...
T Consensus 169 -----------------------------------------------------------------------------~l~ 171 (558)
T COG0143 169 -----------------------------------------------------------------------------ELI 171 (558)
T ss_pred -----------------------------------------------------------------------------hcC
Confidence 111
Q ss_pred ccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCC--ccccchhhhHhHHhhhhc-CCceeecc-ccCCCCcccEE
Q 000999 437 HSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQT--YWVPDYVKEKRFHNWLEN-ARDWAVSR-SRFWGTPLPVW 512 (1193)
Q Consensus 437 h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~--~~~P~~~~~~r~~~wl~~-l~DW~ISR-qr~WG~pIPiw 512 (1193)
-|+||+||..+++|.+++||+++++++++|++++++- ...|+..+ +.+.+||++ ++|||||| ...||+|+|
T Consensus 172 --~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~-ne~~~~i~~GL~d~~IsR~~~~WGipvP-- 246 (558)
T COG0143 172 --NPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRR-NEVLNFLKEGLKDLSITRTDLDWGIPVP-- 246 (558)
T ss_pred --CCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHH-HHHHHHHHccCcccceecCCCCCCccCC--
Confidence 2999999999999999999999999999999999864 33577654 677889975 99999999 778999999
Q ss_pred EcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCC--CChh
Q 000999 513 TSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPF--ENAE 590 (1193)
Q Consensus 513 ~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~--~~~~ 590 (1193)
.+.++++||| ||.-+...+..+++. .+.+
T Consensus 247 --~~p~kv~YVW-----------------------------------------------fDAligYisa~~~~~~~~~~~ 277 (558)
T COG0143 247 --GDPGKVIYVW-----------------------------------------------FDALIGYISALGELAEIGDDE 277 (558)
T ss_pred --CCCCCEEEEe-----------------------------------------------eccHHHHHHHhcchhccCChH
Confidence 4556666654 442222222334433 3557
Q ss_pred hhhhcCCce----eEEecccCccc----hHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhc
Q 000999 591 HFENNFPGQ----FIAEGLDQTRG----WFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDY 662 (1193)
Q Consensus 591 ~f~~~~Pad----~~~~G~D~~r~----Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~y 662 (1193)
.|.+|||+| +++.|+||+|| |.++|++.+. ..+++|++|||++. +|+|||||+||+|||.++++.|
T Consensus 278 ~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~-----~lP~~i~ahg~l~~-~G~KmSKSrG~~V~~~~~~~~~ 351 (558)
T COG0143 278 DFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGL-----PLPTRIFAHGFLTL-EGQKMSKSRGNVVDPDELLEQY 351 (558)
T ss_pred HHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCC-----CCCCEEEeeeeEEE-CCccccccCCcEEeHHHHHHHc
Confidence 899999999 99999999998 5555554333 35689999999995 8999999999999999999999
Q ss_pred ChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHH
Q 000999 663 GADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWIN 742 (1193)
Q Consensus 663 GaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wil 742 (1193)
|+|++||||+...+ .++|.+|+++.+.+.+|.. |-|.+++++++...|..+..++..|.... ... ..|+.++
T Consensus 352 ~~D~lRYyL~~~~p-~~~D~dFs~~~f~~rvN~d---L~n~lgNl~~R~~~fi~k~~~g~vp~~~~---~~~-~~d~~~~ 423 (558)
T COG0143 352 GVDALRYYLARELP-EGSDGDFSWEDFVERVNAD---LANKLGNLANRTLGFINKYFDGVVPAAGA---PDL-EEDEELL 423 (558)
T ss_pred CchHhHHHHHHhCC-CCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCcCCcccc---ccc-hhhHHHH
Confidence 99999999998766 7899999999998776654 57888889988887766655555554321 123 6899999
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCC-hHHHHHHHHHHHHHHHHHHHhcCCCchhH
Q 000999 743 SATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSG-EDDCRIALSTLYNVLLTSCKVMAPFTPFF 821 (1193)
Q Consensus 743 s~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~-~~~~~~a~~tL~~vL~~l~~LLaPf~Pfi 821 (1193)
.....+.+.+.++|+.++|++|++.+++++. .+|.||+..+||.-...+ .++..++++++.++++.++.||+||||..
T Consensus 424 ~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~-~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~ 502 (558)
T COG0143 424 ALAREALEAVAEAMEKYEFRKALEEIMALAS-RANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPET 502 (558)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHhhcCCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcch
Confidence 9999999999999999999999999999996 699999999998533333 56677889999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 000999 822 TEALYQNMRKV 832 (1193)
Q Consensus 822 aEei~~~L~~~ 832 (1193)
|++||++|+..
T Consensus 503 a~ki~~~L~~~ 513 (558)
T COG0143 503 AEKIWDQLGLE 513 (558)
T ss_pred HHHHHHHhCCc
Confidence 99999999853
No 40
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=6.3e-65 Score=583.00 Aligned_cols=312 Identities=38% Similarity=0.731 Sum_probs=286.2
Q ss_pred cEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHH
Q 000999 41 EYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEA 120 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~ 120 (1193)
+|+|++|||||||.||+||+++++++|+++||+||+||+|.+++||||||+|||.+++|+++++.+.. .+++|.+.
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~----~~~~~~~~ 76 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTI----WIEEFRED 76 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccc----cHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999877666543 38899999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCccccccccc
Q 000999 121 CRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYK 200 (1193)
Q Consensus 121 c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~ 200 (1193)
|+++|.+|.+++++++++||++.||+++|.|+++.|++.|+++|.+|+++|+||++.++|
T Consensus 77 ~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v-------------------- 136 (312)
T cd00668 77 PKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV-------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee--------------------
Confidence 999999999999999999999999999999999999999999999999999999884322
Q ss_pred ccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCC
Q 000999 201 DVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANG 280 (1193)
Q Consensus 201 ~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 280 (1193)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCC
Q 000999 281 PGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSG 360 (1193)
Q Consensus 281 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~G 360 (1193)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCC
Q 000999 361 TGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYP 440 (1193)
Q Consensus 361 TGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp 440 (1193)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCCEE
Q 000999 441 FCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGEEI 520 (1193)
Q Consensus 441 ~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~~~ 520 (1193)
+..+|||++++++++++++.+++..|.|+..+ +++.+||++..|||||||++||+|+|-
T Consensus 137 -----------~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~~-~~~~~~l~~~~d~~isR~~~WG~~~P~--------- 195 (312)
T cd00668 137 -----------RITEQWFFDMPKFKEKLLKALRRGKIVPEHVK-NRMEAWLESLLDWAISRQRYWGTPLPE--------- 195 (312)
T ss_pred -----------EeeeeEEEEcHHHHHHHHHHHhcCCcCChHHH-HHHHHHHhCCCCeEEeccCCCCCcCCc---------
Confidence 23458999999999999999998889999865 689999999889999999999999991
Q ss_pred EEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhhhhhcCCcee
Q 000999 521 IVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEHFENNFPGQF 600 (1193)
Q Consensus 521 ~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~f~~~~Pad~ 600 (1193)
+|+||||||+++|.+..+|+.+ .+.|.++||.|+
T Consensus 196 ---------------------------------------------~~i~~Wfds~~~~~~~~~~~~~-~~~~~~~~~~di 229 (312)
T cd00668 196 ---------------------------------------------DVFDVWFDSGIGPLGSLGYPEE-KEWFKDSYPADW 229 (312)
T ss_pred ---------------------------------------------ccccchhhccHHHHHHcCCCcc-chhhhhcCCceE
Confidence 4789999999999999998864 456889999999
Q ss_pred EEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccccc
Q 000999 601 IAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVRAE 680 (1193)
Q Consensus 601 ~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~~~ 680 (1193)
+++|+||+++|+..+++++.++.+..||+++++|||+++++|+|||||+||+|+|.+++++||+|++||||++.++ .++
T Consensus 230 ~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~-~~~ 308 (312)
T cd00668 230 HLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAP-YGD 308 (312)
T ss_pred EEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCC-ccC
Confidence 9999999999999999999999888899999999999998889999999999999999999999999999998765 467
Q ss_pred cccc
Q 000999 681 TLRF 684 (1193)
Q Consensus 681 d~~F 684 (1193)
|.+|
T Consensus 309 d~~~ 312 (312)
T cd00668 309 DIRL 312 (312)
T ss_pred CCCC
Confidence 8776
No 41
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-59 Score=513.68 Aligned_cols=472 Identities=21% Similarity=0.359 Sum_probs=378.7
Q ss_pred CCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHH
Q 000999 38 CQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKY 117 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f 117 (1193)
+.+.|+++.|--|+|..|||||+++.++.|+++||+|++|..|.+..|+|.|||.|+..++. .|..|++
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaat-nG~~P~e---------- 105 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAAT-NGRNPPE---------- 105 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhh-cCCChHH----------
Confidence 44589999999999999999999999999999999999999999999999999999998874 6988764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccccc
Q 000999 118 NEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQ 197 (1193)
Q Consensus 118 ~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~ 197 (1193)
+|++..+++.+.++..| |.++++.+|+||.+++.|+.++..++.+|+||+|.+..+||.+|+|.+.+.+|.+
T Consensus 106 ------~cDr~s~~f~qL~k~~g--i~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k 177 (578)
T KOG0436|consen 106 ------LCDRISQSFRQLWKDAG--IAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLK 177 (578)
T ss_pred ------HHhhhhHHHHHHHHHhC--cchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhc
Confidence 66777778888888899 8999999999999999999999999999999999999999999999876444310
Q ss_pred cccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCC
Q 000999 198 NYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSA 277 (1193)
Q Consensus 198 ~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 277 (1193)
.|
T Consensus 178 --------------------------------------------------------------------------~p---- 179 (578)
T KOG0436|consen 178 --------------------------------------------------------------------------NP---- 179 (578)
T ss_pred --------------------------------------------------------------------------CC----
Confidence 00
Q ss_pred CCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCcccc
Q 000999 278 ANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTS 357 (1193)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~ 357 (1193)
. |.
T Consensus 180 ---------------~----------------------------------------~~---------------------- 182 (578)
T KOG0436|consen 180 ---------------C----------------------------------------PP---------------------- 182 (578)
T ss_pred ---------------C----------------------------------------CC----------------------
Confidence 0 00
Q ss_pred CCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccc
Q 000999 358 DSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTH 437 (1193)
Q Consensus 358 ~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h 437 (1193)
|
T Consensus 183 ----------------------------------------g--------------------------------------- 183 (578)
T KOG0436|consen 183 ----------------------------------------G--------------------------------------- 183 (578)
T ss_pred ----------------------------------------C---------------------------------------
Confidence 0
Q ss_pred cCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcC-Cccc-cchhhhHhHHhhhh-cCCceeecc--cc-CCCCcccE
Q 000999 438 SYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQ-TYWV-PDYVKEKRFHNWLE-NARDWAVSR--SR-FWGTPLPV 511 (1193)
Q Consensus 438 ~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~-~~~~-P~~~~~~r~~~wl~-~l~DW~ISR--qr-~WG~pIPi 511 (1193)
.++.--||.|+.++..+.+|+++++++.++.+.+++ .+++ |+ .+......||+ +++|..||| +| .||+|+|
T Consensus 184 -k~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs-~~~~qVl~~lktglpDlSISRpsarl~WGIPvP- 260 (578)
T KOG0436|consen 184 -KVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPS-YFHNQVLSWLKTGLPDLSISRPSARLDWGIPVP- 260 (578)
T ss_pred -ceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCch-HHHHHHHHHHHcCCCcccccChhhhcccCCCCC-
Confidence 011223688899999999999999999999999875 4554 55 45677889998 699999999 66 6999999
Q ss_pred EEcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCC---C
Q 000999 512 WTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFE---N 588 (1193)
Q Consensus 512 w~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~---~ 588 (1193)
.|.+..+|| |||.-+-..+.++||.+ -
T Consensus 261 ---~ddsQtIYV-----------------------------------------------WfDAL~nYiSvig~~~~~~N~ 290 (578)
T KOG0436|consen 261 ---GDDSQTIYV-----------------------------------------------WFDALLNYISVIGYPNKQQNL 290 (578)
T ss_pred ---CCCcceEEE-----------------------------------------------eHHHHhhHHHhhcCCchhccc
Confidence 455555554 44433333445666631 2
Q ss_pred hhhhhhcCCceeEEecccCccc----hHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcCh
Q 000999 589 AEHFENNFPGQFIAEGLDQTRG----WFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGA 664 (1193)
Q Consensus 589 ~~~f~~~~Pad~~~~G~D~~r~----Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGa 664 (1193)
+..+..+||+.+++.|+||+|| |.++||+.|+ ++++.|++|||++ .+|.|||||+||||||.+++++||+
T Consensus 291 k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGl-----plP~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~kygv 364 (578)
T KOG0436|consen 291 KTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGL-----PLPKMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQKYGV 364 (578)
T ss_pred cceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCC-----CCccEEEEeeeee-ecceecchhhccccCHHHHHHHhCc
Confidence 3456778999999999999998 7888887765 5679999999999 6999999999999999999999999
Q ss_pred hHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHH--hhhhcC-CCCCCchhhhhhcCCchhHHHH
Q 000999 665 DALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKR--LEIEGG-APFIPLDLATLQKSSNVLDQWI 741 (1193)
Q Consensus 665 DalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~--~~~~~~-~~~~p~~~~~~~~~~~~~D~wi 741 (1193)
|++||||+..+. .+.|-+|+++.+....+. .|.|+++.+++++.. +..... .....+ .......+.-+
T Consensus 365 D~vRyflLr~~~-l~~Dgdy~eekl~k~~n~---~La~~lG~LlnRc~gkkln~sn~e~~l~~~-----s~~v~ae~~~l 435 (578)
T KOG0436|consen 365 DAVRYFLLREGE-LGNDGDYSEEKLIKIVNA---HLANTLGNLLNRCLGKKLNISNCESTLVVD-----SPTVAAEGEPL 435 (578)
T ss_pred cceeeEeeeccc-cCCCCCccHHHHHHHHHH---HHHHHHHHHHHHHhhcccChhccccccccC-----CcchhhccchH
Confidence 999999998765 578999999998766443 467888888888653 111110 000000 01123345568
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCC---hHHHHHHHHHHHHHHHHHHHhcCCCc
Q 000999 742 NSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSG---EDDCRIALSTLYNVLLTSCKVMAPFT 818 (1193)
Q Consensus 742 ls~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~---~~~~~~a~~tL~~vL~~l~~LLaPf~ 818 (1193)
.+.++++.+.+.+.++++.++.|++++...+++ .|-|++..+||....+. .+.....+...++||+.+.+||+|+|
T Consensus 436 v~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~-~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~ 514 (578)
T KOG0436|consen 436 VDTVEKLPEVAATNYDNFSLYSALEAVLSIGNA-GNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVA 514 (578)
T ss_pred HHHHHHhHHHHHhhcccccHHHHHHHHHHHHHh-hhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 889999999999999999999999999999974 89999999998543222 23445566778899999999999999
Q ss_pred hhHHHHHHHHhhc
Q 000999 819 PFFTEALYQNMRK 831 (1193)
Q Consensus 819 PfiaEei~~~L~~ 831 (1193)
|.++.+++.+|+.
T Consensus 515 Psls~~llsqlgv 527 (578)
T KOG0436|consen 515 PSLSLRLLSQLGV 527 (578)
T ss_pred chhHHHHHHHcCC
Confidence 9999999999985
No 42
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=1.7e-57 Score=532.16 Aligned_cols=376 Identities=26% Similarity=0.403 Sum_probs=270.5
Q ss_pred EEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHH
Q 000999 42 YVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEAC 121 (1193)
Q Consensus 42 f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c 121 (1193)
|+|+.|+|||||.|||||+.+++.+|+++||+||+|++|.+..|+|+||+||+.++++ .|++++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~-~g~~p~--------------- 64 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEK-QGIDPE--------------- 64 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHH-TTS-HH---------------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHH-cCCCHH---------------
Confidence 6899999999999999999999999999999999999999999999999999999986 788764
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCcccccccccc
Q 000999 122 RSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYKD 201 (1193)
Q Consensus 122 ~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~~ 201 (1193)
++|++++..++++++++| |++|++.+|.++.|.+.|+++|.+|+++|+||++...++||+.|++.|++.+|...
T Consensus 65 -~~~~~~~~~~~~~~~~~~--I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~--- 138 (391)
T PF09334_consen 65 -EFCDKYSAKFKELLEALN--ISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGT--- 138 (391)
T ss_dssp -HHHHHHHHHHHHHHHHTT-----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCE---
T ss_pred -HHHHHHHHHHHHHHHHcC--CCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeecc---
Confidence 388899999999999999 88889999999999999999999999999999999999999999999998776310
Q ss_pred cCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCC
Q 000999 202 VPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGP 281 (1193)
Q Consensus 202 ~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~ 281 (1193)
|-++.. .
T Consensus 139 -------------------------------------CP~C~~-------------------------~----------- 145 (391)
T PF09334_consen 139 -------------------------------------CPYCGS-------------------------D----------- 145 (391)
T ss_dssp -------------------------------------ETTT---------------------------S-----------
T ss_pred -------------------------------------ccCcCc-------------------------c-----------
Confidence 000000 0
Q ss_pred CCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCCC
Q 000999 282 GGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSGT 361 (1193)
Q Consensus 282 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~GT 361 (1193)
... | ... +-.|..+.|
T Consensus 146 ---------~a~---g-----------------~~C--------e~cG~~~~~--------------------------- 161 (391)
T PF09334_consen 146 ---------KAR---G-----------------DQC--------ENCGRPLEP--------------------------- 161 (391)
T ss_dssp ---------SCT---T-----------------TEE--------TTTSSBEEC---------------------------
T ss_pred ---------ccC---C-----------------Ccc--------cCCCCCccc---------------------------
Confidence 000 0 000 001111001
Q ss_pred CceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCCc
Q 000999 362 GIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYPF 441 (1193)
Q Consensus 362 GiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~ 441 (1193)
.+++ -|.
T Consensus 162 --------------------------~~l~-----------------------------------------------~p~ 168 (391)
T PF09334_consen 162 --------------------------EELI-----------------------------------------------NPV 168 (391)
T ss_dssp --------------------------CCSE-----------------------------------------------CEE
T ss_pred --------------------------cccc-----------------------------------------------CCc
Confidence 0111 289
Q ss_pred ccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCc-cccchhhhHhHHhhhhc-CCceeeccccCCCCcccEEEcCCCCE
Q 000999 442 CWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTY-WVPDYVKEKRFHNWLEN-ARDWAVSRSRFWGTPLPVWTSEDGEE 519 (1193)
Q Consensus 442 c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~-~~P~~~~~~r~~~wl~~-l~DW~ISRqr~WG~pIPiw~~~~~~~ 519 (1193)
|-.||.+++.+.++|||++++++++++.+.+++.. +.|+.. .....+||++ ++||||||...||+|+| ++.++
T Consensus 169 ~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~-~~~~~~~l~~~L~d~~Is~~~~WGI~vP----~~~~~ 243 (391)
T PF09334_consen 169 CKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRV-REIVRNWLKEGLPDLSISRPLDWGIPVP----GDPGQ 243 (391)
T ss_dssp ETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHH-HHHHHHHHHT----EE-ECTTSSSEEET----TEEEE
T ss_pred cccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhH-HHHHHHHhhcccCceeeecCCCCcceee----ccCCc
Confidence 99999999999999999999999999999997643 335544 3567799986 99999999999999999 45556
Q ss_pred EEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCC---CChhhhhhcC
Q 000999 520 IIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPF---ENAEHFENNF 596 (1193)
Q Consensus 520 ~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~---~~~~~f~~~~ 596 (1193)
+++|| ||.-+...+..+++. .+.+.|.++|
T Consensus 244 ~iyVW-----------------------------------------------fdal~~Ylt~~~~~~~~~~~~~~~~~~w 276 (391)
T PF09334_consen 244 VIYVW-----------------------------------------------FDALIGYLTATGYLAEKRGDPEEFKKWW 276 (391)
T ss_dssp EE-HH-----------------------------------------------HHHHTHHHHTTTTTHHHTTTSHHHHHHH
T ss_pred eEEEc-----------------------------------------------chHHHHHHHHhccccccccccchhhhhc
Confidence 66655 332111111222221 1344667777
Q ss_pred -----CceeEEecccCccch----HHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHH
Q 000999 597 -----PGQFIAEGLDQTRGW----FYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADAL 667 (1193)
Q Consensus 597 -----Pad~~~~G~D~~r~W----f~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDal 667 (1193)
+.-+++.|+|+++|| ++.+++ .+-++++++++|||++. +|+|||||+||+|+|.+++++||+|++
T Consensus 277 ~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a-----~~~~lP~~i~~~~~~~~-~g~K~SkS~gn~i~~~~~~~~~~~D~~ 350 (391)
T PF09334_consen 277 ANDSDVEIVHFIGKDIIRFHAIYWPAMLLA-----AGLPLPRRIVVHGFLTL-DGEKMSKSRGNVIWPDDLLEEYGADAL 350 (391)
T ss_dssp CST--SEEEEEEEGGGHHHHHTHHHHHHHH-----CTB---SEEEEE--EEE-TTCCEETTTTESSBHHHHHHHH-HHHH
T ss_pred cccCCceEEEEEccchhHHHHHHhHHHHhc-----ccCCCCCEEEeeeeEEE-CCeeccccCCcccCHHHHHHhCChHHH
Confidence 234999999999984 333333 33355699999999995 899999999999999999999999999
Q ss_pred HHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHH
Q 000999 668 RLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNA 711 (1193)
Q Consensus 668 R~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~ 711 (1193)
||||++.++ ..+|.+|+++.+.+.+++. |.|.++++++++
T Consensus 351 R~~L~~~~~-~~~d~~F~~~~~~~~~n~~---L~~~~gNl~~R~ 390 (391)
T PF09334_consen 351 RYYLAREGP-EGQDSDFSWEDFIERVNNE---LANTLGNLVNRV 390 (391)
T ss_dssp HHHHHHHSS-TTS-EEE-HHHHHHHHHHC---CCCCHHHHHHHH
T ss_pred HHHHHHhcC-CCCCCCCCHHHHHHHHHHH---HHHhhhhHHhcc
Confidence 999998766 5789999999988766554 456666676653
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=2.1e-55 Score=505.02 Aligned_cols=312 Identities=26% Similarity=0.468 Sum_probs=264.3
Q ss_pred cEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHH
Q 000999 41 EYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEA 120 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~ 120 (1193)
+|+++.|||||||.||+||+++.+++|+++||+||+|++|.+++|||+||+||+.++++ .|++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~-~g~~~~-------------- 65 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE-EGVTPQ-------------- 65 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH-cCCCHH--------------
Confidence 48999999999999999999999999999999999999999999999999999999976 687653
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCccccccccc
Q 000999 121 CRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYK 200 (1193)
Q Consensus 121 c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~ 200 (1193)
++++++.+.+++++++|| |+||..++|+++.|.+.|+++|.+|+++|++|++...++|||.|+|+|+
T Consensus 66 --e~~~~~~~~~~~~l~~Lg--I~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------- 132 (319)
T cd00814 66 --ELCDKYHEIFKDLFKWLN--ISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------- 132 (319)
T ss_pred --HHHHHHHHHHHHHHHHcC--CcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------
Confidence 478889999999999999 6888899999999999999999999999999999999999999997654
Q ss_pred ccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCC
Q 000999 201 DVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANG 280 (1193)
Q Consensus 201 ~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 280 (1193)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCC
Q 000999 281 PGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSG 360 (1193)
Q Consensus 281 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~G 360 (1193)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCC
Q 000999 361 TGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYP 440 (1193)
Q Consensus 361 TGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp 440 (1193)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCc--cccchhhhHhHHhhhhc-CCceeecccc-CCCCcccEEEcCC
Q 000999 441 FCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTY--WVPDYVKEKRFHNWLEN-ARDWAVSRSR-FWGTPLPVWTSED 516 (1193)
Q Consensus 441 ~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~--~~P~~~~~~r~~~wl~~-l~DW~ISRqr-~WG~pIPiw~~~~ 516 (1193)
+++.++|||++++++++++++.+++.. +.|+..+ +.+.+||++ ++|||||||+ .||+|+|. +
T Consensus 133 ---------e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~-~~~~~~l~~~l~d~~isR~~~~WGipvp~----~ 198 (319)
T cd00814 133 ---------EWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENAR-NEVLSWLKEGLKDLSITRDLFDWGIPVPL----D 198 (319)
T ss_pred ---------EEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHH-HHHHHHHhCCCcccCCCccCcccCeeCCC----C
Confidence 123356899999999999999887543 6788754 678899997 9999999999 99999994 1
Q ss_pred CCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCCh---hhhh
Q 000999 517 GEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENA---EHFE 593 (1193)
Q Consensus 517 ~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~---~~f~ 593 (1193)
. ..|++||||+...+.+..+++.+.. +.|.
T Consensus 199 ~-----------------------------------------------~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~ 231 (319)
T cd00814 199 P-----------------------------------------------GKVIYVWFDALIGYISATGYYNEEWGNSWWWK 231 (319)
T ss_pred C-----------------------------------------------CcEEEEehhhHHHHHHHcccccccccchhhhh
Confidence 1 1467788887766666666654332 2466
Q ss_pred hcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhh
Q 000999 594 NNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLIN 673 (1193)
Q Consensus 594 ~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~ 673 (1193)
..+|.++++.|+|++++|.....++-.+ .+.+|++.+++|||++. +|+|||||+||+|+|.+++++||+|++||||++
T Consensus 232 ~~~~~~v~~~G~D~~~fh~~~~pa~l~~-~~~~~~~~~~~~~~~~~-~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~ 309 (319)
T cd00814 232 DGWPELVHFIGKDIIRFHAIYWPAMLLG-AGLPLPTRIVAHGYLTV-EGKKMSKSRGNVVDPDDLLERYGADALRYYLLR 309 (319)
T ss_pred cCCCceEEEEeechhhhhHHHHHHHHHh-CCCCCCcEeeeeeeEEE-CCeeecccCCcccCHHHHHHHcCchHHHHHHHh
Confidence 7789999999999999852211111111 23577899999999997 699999999999999999999999999999998
Q ss_pred CCccccccccc
Q 000999 674 SPVVRAETLRF 684 (1193)
Q Consensus 674 ~~~~~~~d~~F 684 (1193)
.++ .++|.+|
T Consensus 310 ~~~-~~~d~~f 319 (319)
T cd00814 310 ERP-EGKDSDF 319 (319)
T ss_pred cCC-CCCCCCC
Confidence 766 5678776
No 44
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=9e-54 Score=489.80 Aligned_cols=297 Identities=31% Similarity=0.540 Sum_probs=253.6
Q ss_pred cEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHH
Q 000999 41 EYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEA 120 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~ 120 (1193)
+|+|+.|||||||.+|+||+++++++|+++||+||+|++|.+++|+|+||+||+..+++ .|++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~-~g~~---------------- 63 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIK-IGRD---------------- 63 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHH-cCCC----------------
Confidence 58999999999999999999999999999999999999999999999999999999876 5763
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCccccccccc
Q 000999 121 CRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAGQNYK 200 (1193)
Q Consensus 121 c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~~~y~ 200 (1193)
|++++++|.+.+++++++||+++||++.+.|++|.|.+.|+++|.+|+++|+||++..+++||
T Consensus 64 ~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~----------------- 126 (314)
T cd00812 64 PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC----------------- 126 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee-----------------
Confidence 667999999999999999999999999999999999999999999999999999998888777
Q ss_pred ccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCC
Q 000999 201 DVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANG 280 (1193)
Q Consensus 201 ~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 280 (1193)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccccCCC
Q 000999 281 PGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVTSDSG 360 (1193)
Q Consensus 281 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~~~~G 360 (1193)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeeccccccCC
Q 000999 361 TGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLTHSYP 440 (1193)
Q Consensus 361 TGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp 440 (1193)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCeEEeeeCcccccc--HHHHHHHHHhhcCCccccchhhhHhHHhhhhcCCceeeccccCCCCcccEEEcCCCC
Q 000999 441 FCWRSDTPLIYRAVPSWFVRV--ETLKEKLLDNNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWTSEDGE 518 (1193)
Q Consensus 441 ~c~R~~~pli~~~~~qWFi~~--~~~k~~ll~~~~~~~~~P~~~~~~r~~~wl~~l~DW~ISRqr~WG~pIPiw~~~~~~ 518 (1193)
+.++|||+++ +++++++.+.+++..+.|+.++ +.+.+||+ ||||+.||+|+|+
T Consensus 127 -----------~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~-~~~~~~l~------isR~~~wGipvP~------- 181 (314)
T cd00812 127 -----------KLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVR-AMQENWIG------CSRQRYWGTPIPW------- 181 (314)
T ss_pred -----------CccceEEEEcCcHHHHHHHHHHHHhcCcCCHHHH-HHHHHHhe------eeeecCCcCCcCc-------
Confidence 1134799999 9999999999998887899866 67889997 9999999999993
Q ss_pred EEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCC--cccccC-CC-------CC
Q 000999 519 EIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMP--YAYIHY-PF-------EN 588 (1193)
Q Consensus 519 ~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p--~a~~~~-p~-------~~ 588 (1193)
.+|++|||||.+.+ |..... +. .+
T Consensus 182 ----------------------------------------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~ 215 (314)
T cd00812 182 ----------------------------------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFD 215 (314)
T ss_pred ----------------------------------------------ccccccccccHHHHHHHHhcccccCcchhhhhhh
Confidence 13678888887522 221111 11 13
Q ss_pred hhhhhhcCCceeEEecccCccchHHHHHHHHHHccC-----CCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcC
Q 000999 589 AEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFG-----KPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYG 663 (1193)
Q Consensus 589 ~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~-----~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yG 663 (1193)
++.|.+|||+|+++.|+||+++|+....+...++++ ..|++++++||||+. +|+|||||+||+|+|.+++++||
T Consensus 216 ~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~~-~g~KmSkS~Gn~v~~~dll~~~~ 294 (314)
T cd00812 216 REEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVLL-EGEKMSKSKGNVVTPDEAIKKYG 294 (314)
T ss_pred HHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEec-CccccCCcCCCCCCHHHHHHHhC
Confidence 457999999999999999999995434444444443 257889999999996 89999999999999999999999
Q ss_pred hhHHHHhHhhCCccccccccccH
Q 000999 664 ADALRLYLINSPVVRAETLRFKK 686 (1193)
Q Consensus 664 aDalR~yL~~~~~~~~~d~~Fs~ 686 (1193)
+|++||||++.++ .|.+|++
T Consensus 295 ~Da~R~~ll~~~~---~~~~f~~ 314 (314)
T cd00812 295 ADAARLYILFAAP---PDADFDW 314 (314)
T ss_pred cHHHHHHHHhcCC---cCCCCCC
Confidence 9999999997655 4677763
No 45
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-42 Score=379.40 Aligned_cols=494 Identities=18% Similarity=0.267 Sum_probs=376.7
Q ss_pred CCCcEEEEcCCCCCCCccchhHHHh-hHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHH
Q 000999 38 CQPEYVFYDGPPFATGLPHYGHILA-GTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDK 116 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG~lH~GH~~~-~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~ 116 (1193)
++..-+++..-||+|..||+|++.+ ..-+|+++||.+.+|++.++.+|+|..|..+|.++.. .|.+|++
T Consensus 12 n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkale-eg~tP~e--------- 81 (567)
T KOG1247|consen 12 NERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALE-EGLTPQE--------- 81 (567)
T ss_pred CccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHH-ccCCHHH---------
Confidence 4555788999999999999999998 4559999999999999999999999999999999875 6998864
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCCCCccCccccc
Q 000999 117 YNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGCKTPLSNFEAG 196 (1193)
Q Consensus 117 f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~~T~Ls~~Ev~ 196 (1193)
++++|+...+....-++ ||||.+-+|..+..-+.+|.+|.+|+++|++-...-.+.||..|++.|+|..|+
T Consensus 82 -------lcdKyh~ihk~vy~Wf~--IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~ve 152 (567)
T KOG1247|consen 82 -------LCDKYHGIHKVVYDWFK--IDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVE 152 (567)
T ss_pred -------HHHhcchhHHHHHHhhc--ccccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhh
Confidence 78889999999999999 999999999999999999999999999999999999999999999999987663
Q ss_pred ccccccCCCeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCC
Q 000999 197 QNYKDVPDPEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSS 276 (1193)
Q Consensus 197 ~~y~~~~~~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~ 276 (1193)
.. + |. ..
T Consensus 153 g~-----------------c----------------p~-------C~--------------------------------- 159 (567)
T KOG1247|consen 153 GK-----------------C----------------PF-------CG--------------------------------- 159 (567)
T ss_pred cc-----------------C----------------CC-------CC---------------------------------
Confidence 20 0 00 00
Q ss_pred CCCCCCCCCCCCcccccccCCCcccchhhhhcccccccceEeeeeeecccccccccccCcccccccCCceEEEEecCccc
Q 000999 277 AANGPGGDSKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKYEPLFDYFKEFSDVAFRVIADNYVT 356 (1193)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y~Pl~~~~~~~~~~~~~vi~~~~V~ 356 (1193)
| +.-.|.
T Consensus 160 --------------------------------------y----d~ARGD------------------------------- 166 (567)
T KOG1247|consen 160 --------------------------------------Y----DDARGD------------------------------- 166 (567)
T ss_pred --------------------------------------C----ccccch-------------------------------
Confidence 1 000111
Q ss_pred cCCCCCceeecCCCChhhHHHHHHcCCCccCCCcceeecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeecccc
Q 000999 357 SDSGTGIVHCAPAFGEDDYRVCIENQIINKGENLIVAVDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLT 436 (1193)
Q Consensus 357 ~~~GTGiVh~aPahg~~D~~~~~~~~l~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~ 436 (1193)
.|-++| .++++ - +
T Consensus 167 --------------------qcd~cG------~l~N~---------------------------------------~--e 179 (567)
T KOG1247|consen 167 --------------------QCDKCG------KLVNA---------------------------------------A--E 179 (567)
T ss_pred --------------------hhhhhh------hhcCH---------------------------------------H--H
Confidence 111111 01110 0 0
Q ss_pred ccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcC----CccccchhhhHhHHhhhh-cCCceeeccccCCCCcccE
Q 000999 437 HSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQ----TYWVPDYVKEKRFHNWLE-NARDWAVSRSRFWGTPLPV 511 (1193)
Q Consensus 437 h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~----~~~~P~~~~~~r~~~wl~-~l~DW~ISRqr~WG~pIPi 511 (1193)
-.-|.|--|..-.+++.+.+.|+.++++++++-+++++ -.|-+.. ......||. +++..||+|..-||||+|+
T Consensus 180 l~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na--~~it~sWlk~gl~pRCiTRDLkWGtpVPl 257 (567)
T KOG1247|consen 180 LKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNA--QNITRSWLKDGLKPRCITRDLKWGTPVPL 257 (567)
T ss_pred hcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccch--HHHHHHHHHccccccccccccccCCCcCh
Confidence 11388888988889999999999999999999999875 4687764 367889997 6999999999999999994
Q ss_pred EEcCCCCEEEEecChHHHHHhhCCcccccccCCCccccccCCCCCCcccccccccceeeeccCCCCCcccccCCCCChhh
Q 000999 512 WTSEDGEEIIVVDSVDKLEKLSGEKIFDLHRHNIDHITIPSSRGPEFGLLRRIEDVFDCWFESGSMPYAYIHYPFENAEH 591 (1193)
Q Consensus 512 w~~~~~~~~~~v~s~~el~~l~g~~~~dlh~~~id~~~~~~~~g~~~~~~~r~~dv~D~WFdSg~~p~a~~~~p~~~~~~ 591 (1193)
+ + + ...||.+|||. |...+....+-.++
T Consensus 258 ---e---------------~-----------------------------f--k~KVfYVWFDA---~IGYlsit~~yt~e 285 (567)
T KOG1247|consen 258 ---E---------------K-----------------------------F--KDKVFYVWFDA---PIGYLSITKNYTDE 285 (567)
T ss_pred ---h---------------h-----------------------------h--cccEEEEEEcC---cceEEEeehhhhHH
Confidence 1 0 0 12489999993 22222212233478
Q ss_pred hhhcCCc-----eeEEecccCccchHHHHHHHHHHccCCCCc---cEEEEEeeEEccCCccccccCCCCCChhhhHh-hc
Q 000999 592 FENNFPG-----QFIAEGLDQTRGWFYTLMVLSTALFGKPAF---RNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-DY 662 (1193)
Q Consensus 592 f~~~~Pa-----d~~~~G~D~~r~Wf~~l~~~~~~l~~~~pf---k~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-~y 662 (1193)
|++||-. -+.+.|+|.+.|| +.++.++.+....-| +++.+...+.- +..|+|||+|..|...++-+ ..
T Consensus 286 w~kWwknpE~v~LyqFmgKDNVpFH--tviFP~s~lgt~en~t~v~~l~aTeYLny-E~gKFSKSrgvGvFG~~aqd~gi 362 (567)
T KOG1247|consen 286 WEKWWKNPENVELYQFMGKDNVPFH--TVIFPCSQLGTEENYTVVHHLSATEYLNY-EDGKFSKSRGVGVFGNDAQDTGI 362 (567)
T ss_pred HHHHhcCHhhhhHHHHhccCCCcce--eeecchhhhcCCCCchhheeechhhhhcc-ccCcccccccccccccccccCCC
Confidence 8888743 2677899999864 444455555444545 56666666544 55699999999999988876 58
Q ss_pred ChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHH
Q 000999 663 GADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWIN 742 (1193)
Q Consensus 663 GaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wil 742 (1193)
++|..||||+...| ..+|..|+|+.+...++. .|.|.+++|++++..|....-.+.+|.- ....-|+-++
T Consensus 363 ~~~vWRyYLl~~RP-EssDs~Fsw~df~~k~ns---eLl~NLGNFvNR~l~fv~~~~~g~Vp~~------~~~~~~~~~~ 432 (567)
T KOG1247|consen 363 PASVWRYYLLYIRP-ESSDSAFSWDDFVLKVNS---ELLNNLGNFVNRVLKFVAAKYNGVVPEM------ELTSGDKKLL 432 (567)
T ss_pred CHHHHHHHHhhccC-cccCCcCcHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHhhCCcccce------eecCChHHHH
Confidence 99999999999877 678999999998765443 4567777888887766443333455542 1233388899
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 000999 743 SATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFT 822 (1193)
Q Consensus 743 s~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~Pfia 822 (1193)
+.++.+..+..++||.-+++.|++.+|.... ..|.|++.++..-.-+.+.+.+..+..+...++..++.||+||||.++
T Consensus 433 ~dv~~~~~~y~~~me~vklr~~l~~~m~is~-~GNqylQ~~~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s 511 (567)
T KOG1247|consen 433 EDVNELLAKYVAAMEKVKLREALKTAMEISR-RGNQYLQENTDNKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTS 511 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHhcccccchhhhcccccceeeehhhHHHHHHHHHhccccccch
Confidence 9999999999999999999999999999864 699999998843222222334445566777888889999999999999
Q ss_pred HHHHHHhhc
Q 000999 823 EALYQNMRK 831 (1193)
Q Consensus 823 Eei~~~L~~ 831 (1193)
.+|+.+|+.
T Consensus 512 ~~I~kqlnl 520 (567)
T KOG1247|consen 512 AEILKQLNL 520 (567)
T ss_pred HHHHHHhCC
Confidence 999999974
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=5.1e-38 Score=376.49 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=138.3
Q ss_pred CceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCc
Q 000999 597 PGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPV 676 (1193)
Q Consensus 597 Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~ 676 (1193)
|.|++..|.|++++|+...++.|.+++| .||.++++|+.+++.+|+|||||+||+|+|.+++++||+|++|||++++.+
T Consensus 220 ~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~ 298 (463)
T PRK00260 220 TFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHY 298 (463)
T ss_pred CcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCC
Confidence 5689999999999999999999999999 899999999888889999999999999999999999999999999998655
Q ss_pred cccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 000999 677 VRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEM 756 (1193)
Q Consensus 677 ~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~ 756 (1193)
.++++|+++.+.+. ++.+.++||+++++.. ...|+|++++++.+++.+.++|
T Consensus 299 --~~~~~fs~~~l~~a-~~~~~rl~~~~~~~~~-------------------------~~~d~~~~~~l~~~~~~~~~al 350 (463)
T PRK00260 299 --RSPLNFSEEALEQA-KKALERLYNALAETAL-------------------------GEDDEALLAELEEFKERFIEAM 350 (463)
T ss_pred --CCCCccCHHHHHHH-HHHHHHHHHHHHHhhh-------------------------ccchhhHHHHHHHHHHHHHHHH
Confidence 67999999998776 6779999998887641 1245789999999999999999
Q ss_pred h-cCChhHHHHHHHHHHHHHHHHHHH
Q 000999 757 E-GYRLYTVVPYLLKFLDNLTNIYVR 781 (1193)
Q Consensus 757 e-~y~~~~a~~~l~~fi~~lsnwYi~ 781 (1193)
+ +|+++.|+..|++|+++ .|+|++
T Consensus 351 ~ddln~~~Al~~l~~lv~~-~n~~~~ 375 (463)
T PRK00260 351 DDDFNTPEALAVLFELARE-INRALE 375 (463)
T ss_pred HhcccHHHHHHHHHHHHHH-HHHHhh
Confidence 5 99999999999999975 567764
No 47
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=3.4e-33 Score=343.57 Aligned_cols=169 Identities=18% Similarity=0.223 Sum_probs=142.2
Q ss_pred CCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEE-eeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhC
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICN-GLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~ 674 (1193)
+|.|++..|.|+++.|.-.-++.|.+++++.||.++++| |||. .+|+|||||+||+|+|.+++++||+|++||||+++
T Consensus 267 ~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~-i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~ 345 (651)
T PTZ00399 267 DPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLH-IKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLH 345 (651)
T ss_pred CcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEE-eccchhhhcCCCcccHHHHHHHcChHHHHHHHHhc
Confidence 589999999999999999999999999999999999999 9976 69999999999999999999999999999999976
Q ss_pred CccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHH
Q 000999 675 PVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQ 754 (1193)
Q Consensus 675 ~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~ 754 (1193)
+. .+|++|+++.+.+. .+..++++|.+.++...+... .. +. . ......|+|+++.++.+.+.+.+
T Consensus 346 ~~--~~dldFS~e~l~~a-~~~~~~l~n~~~rl~s~l~~~------~~-~~-~----~~~~~~d~~Ll~~l~~~~~~v~~ 410 (651)
T PTZ00399 346 KW--DKPMNYSDESMDEA-IEKDKVFFNFFANVKIKLRES------EL-TS-P----QKWTQHDFELNELFEETKSAVHA 410 (651)
T ss_pred CC--CCCCccCHHHHHHH-HHHHHHHHHHHHHHHHHHhhc------cc-cc-c----ccCCHHHHHHHHHHHHHHHHHHH
Confidence 44 78999999998776 445677888766655443210 00 10 0 12356789999999999999999
Q ss_pred HH-hcCChhHHHHHHHHHHHHHHHHHHH
Q 000999 755 EM-EGYRLYTVVPYLLKFLDNLTNIYVR 781 (1193)
Q Consensus 755 ~~-e~y~~~~a~~~l~~fi~~lsnwYi~ 781 (1193)
+| ++|+++.|+..|++|+. .+|+|++
T Consensus 411 Am~Ddfnt~~Al~~L~eLv~-~~N~yi~ 437 (651)
T PTZ00399 411 ALLDNFDTPEALQALQKLIS-ATNTYLN 437 (651)
T ss_pred HHHhcCCHHHHHHHHHHHHH-HHHHHHh
Confidence 99 78999999999999997 4799986
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=6.4e-34 Score=340.22 Aligned_cols=154 Identities=20% Similarity=0.235 Sum_probs=120.2
Q ss_pred CceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCc
Q 000999 597 PGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPV 676 (1193)
Q Consensus 597 Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~ 676 (1193)
|.|++..|.|++++|+...++.+.+++++ ||.++++|+.+++.+|+|||||+||+|+|.+++++||+|++|||++++++
T Consensus 219 ~~Dih~gG~Dl~fpHhene~aqs~a~~g~-~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~ 297 (465)
T TIGR00435 219 QIDIHGGGVDLIFPHHENEIAQSEAAFGK-QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHY 297 (465)
T ss_pred CceeeccccccccchHHHHHHHHHHhcCC-CCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCC
Confidence 56899999999999999999999999995 56566555555568999999999999999999999999999999998755
Q ss_pred cccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 000999 677 VRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEM 756 (1193)
Q Consensus 677 ~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~ 756 (1193)
.++++|+++.+.+. ++.+.+|||+++++..... . .. .... . .+ .....+.+.+.++|
T Consensus 298 --~~~l~fs~~~l~~a-~~~~~rl~~~~~~~~~~~~------~-~~-~~~~-----~---~~----~~~~~~~~~f~~al 354 (465)
T TIGR00435 298 --RSPLDFSEELLEAA-KNALERLYKALRVLDTTLA------Y-SG-NQSL-----N---KF----PDEKEFEARFVEAM 354 (465)
T ss_pred --CCCCccCHHHHHHH-HHHHHHHHHHHHHHHhhhc------c-cc-cccc-----c---cc----hhHHHHHHHHHHHH
Confidence 67999999999886 6779999999988754321 0 00 0000 0 00 11223456677788
Q ss_pred h-cCChhHHHHHHHHHHHH
Q 000999 757 E-GYRLYTVVPYLLKFLDN 774 (1193)
Q Consensus 757 e-~y~~~~a~~~l~~fi~~ 774 (1193)
+ ++++..|+..|.+++..
T Consensus 355 ~dDlnt~~a~~~l~~~~~~ 373 (465)
T TIGR00435 355 DDDLNTANALAVLFELAKS 373 (465)
T ss_pred hhccCHHHHHHHHHHHHHH
Confidence 4 79999999999999964
No 49
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.97 E-value=1.1e-31 Score=310.59 Aligned_cols=141 Identities=15% Similarity=0.114 Sum_probs=117.0
Q ss_pred ceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhh-cChhHHHHhHhhCCc
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIND-YGADALRLYLINSPV 676 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~-yGaDalR~yL~~~~~ 676 (1193)
.|++..|.|+++.|....++.+.+++++.||.++++|+.+++.+|+|||||+||+++|.++++. |++|++|||++++..
T Consensus 242 ~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Y 321 (411)
T TIGR03447 242 FDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHY 321 (411)
T ss_pred eecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCC
Confidence 4889999999999999999999999999999999999999999999999999999999999886 899999999997655
Q ss_pred cccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 000999 677 VRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEM 756 (1193)
Q Consensus 677 ~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~ 756 (1193)
.++++|+++.+.+. ++.+.+|+|++..+ . . . .+..+...+.++|
T Consensus 322 --r~pl~fs~e~l~~a-~~~l~rl~~~~~~~----~--------------------~-~--------~~~~~~~~~~~al 365 (411)
T TIGR03447 322 --RQDRDWTDAVLAEA-EARLARWRAALAAT----D--------------------A-P--------DATDLIARLRQHL 365 (411)
T ss_pred --CCCCccCHHHHHHH-HHHHHHHHHHHhhc----c--------------------c-c--------hHHHHHHHHHHHH
Confidence 67999999999875 66777777754311 0 0 0 1123445566777
Q ss_pred h-cCChhHHHHHHHHHHHH
Q 000999 757 E-GYRLYTVVPYLLKFLDN 774 (1193)
Q Consensus 757 e-~y~~~~a~~~l~~fi~~ 774 (1193)
+ ++++..|+..|.+++..
T Consensus 366 ~dDln~p~a~~~l~~~~~~ 384 (411)
T TIGR03447 366 ANDLDTPAALAAVDNWAAA 384 (411)
T ss_pred HhcCChHHHHHHHHHHHHH
Confidence 4 79999999999999853
No 50
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=2.5e-31 Score=306.54 Aligned_cols=147 Identities=14% Similarity=0.071 Sum_probs=119.1
Q ss_pred CceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhh-cChhHHHHhHhhCC
Q 000999 597 PGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIND-YGADALRLYLINSP 675 (1193)
Q Consensus 597 Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~-yGaDalR~yL~~~~ 675 (1193)
|.|++..|.|+++.|....++.+.+++++.||.++++||.+++.+|+|||||+||+|+|.++++. ++++++||||+++.
T Consensus 214 ~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~ 293 (384)
T PRK12418 214 GFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGH 293 (384)
T ss_pred CcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccC
Confidence 45899999999999999999999999999999999999999999999999999999999997643 44449999999665
Q ss_pred ccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Q 000999 676 VVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQE 755 (1193)
Q Consensus 676 ~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~ 755 (1193)
. .++++|+++.+.+. ++.+.+|+|++... . . . .+..+.+.+.++
T Consensus 294 y--r~~l~fs~e~l~~a-~~~l~r~~~~~~~~----~--------------------~-~--------~~~~~~~~f~~a 337 (384)
T PRK12418 294 Y--RADREWTDAVLAEA-EARLARWRAAAALP----A--------------------G-P--------DAADVVARVRAA 337 (384)
T ss_pred C--CCCcccCHHHHHHH-HHHHHHHHHHHhcc----c--------------------c-c--------hHHHHHHHHHHH
Confidence 5 67999999999875 66677777754211 0 0 0 122345677888
Q ss_pred Hh-cCChhHHHHHHHHHHHHHHHHHH
Q 000999 756 ME-GYRLYTVVPYLLKFLDNLTNIYV 780 (1193)
Q Consensus 756 ~e-~y~~~~a~~~l~~fi~~lsnwYi 780 (1193)
|+ ++++..|+..|.+++.+ .|.|+
T Consensus 338 l~dDlnt~~a~~~l~~~~~~-~n~~~ 362 (384)
T PRK12418 338 LADDLDTPGALAAVDGWATD-ALEGG 362 (384)
T ss_pred HHhcCChHHHHHHHHHHHHH-HHhcc
Confidence 85 69999999999999974 66664
No 51
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=3.1e-29 Score=297.15 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=110.2
Q ss_pred cEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceec----------ccchhhHHHHHHHHHHcCCCCcchhh
Q 000999 41 EYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRF----------GWDCHGLPVENEIDKTLGIKRRDDVF 110 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~----------G~D~hGlpie~~v~k~lg~~~~~~~~ 110 (1193)
.--+|.-=|++++.+||||+++++..|++.||.++.||+|.+.. |.|+||-+|...+++ .|+++.
T Consensus 23 ~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~-~g~~~~---- 97 (490)
T PRK14536 23 HVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQE-HGKSVL---- 97 (490)
T ss_pred ceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHH-cCCCHH----
Confidence 34566666899999999999999999999999999999999996 999999999998864 688754
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCC
Q 000999 111 QMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTG 185 (1193)
Q Consensus 111 ~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~ 185 (1193)
+++.+|.+.+.+.+++|| |.+...+ |..+.|++.++.++.+|.++|++|++...|+||++
T Consensus 98 ------------e~a~~~~~~f~~d~~~Ln--i~~~~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~ 157 (490)
T PRK14536 98 ------------EIAAHYTAAFFRDTARLN--IERPSIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIR 157 (490)
T ss_pred ------------HHHHHHHHHHHHHHHHcC--CCCCcee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCC
Confidence 488899999999999999 5555444 77799999999999999999999999999999873
No 52
>PLN02946 cysteine-tRNA ligase
Probab=99.96 E-value=2.8e-29 Score=300.07 Aligned_cols=165 Identities=18% Similarity=0.164 Sum_probs=123.9
Q ss_pred ceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCcc
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVV 677 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~ 677 (1193)
.|+|..|.|+++.|...-++.+.+..++...+..+.||||+ .+|+|||||+||++++.+++++||+|++||||+++..
T Consensus 278 ~DIH~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hy- 355 (557)
T PLN02946 278 FDIHGGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHY- 355 (557)
T ss_pred eeEeccccccCCCcccchHHHHHHHhCCCCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCC-
Confidence 58999999999999999999998888865556778889998 6999999999999999999999999999999998765
Q ss_pred ccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHh
Q 000999 678 RAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEME 757 (1193)
Q Consensus 678 ~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e 757 (1193)
.++++|+++.+.+. .+.+.++++++..+...+. .... .+ . ... .+.-+...+..+.+.+.++|+
T Consensus 356 -r~~l~fs~e~L~~a-~~~l~~l~~~~~~~~~~l~---~~~~-~~--~-------~~~-~~~~~~~~~~~~~~~f~~Al~ 419 (557)
T PLN02946 356 -RSPINYSDVQLESA-SERIFYIYQTLHDCEESLQ---QHDS-TF--E-------KDS-VPPDTLNCINKFHDEFVTSMS 419 (557)
T ss_pred -CCCcEecHHHHHHH-HHHHHHHHHHHHHHHHHhh---hhcc-cc--c-------ccc-cchhhHHHHHHHHHHHHHHHH
Confidence 68999999998776 5556667776665543321 0000 00 0 000 011122344566678888885
Q ss_pred -cCChhHHHHHHHHHHHHHHHHHHH
Q 000999 758 -GYRLYTVVPYLLKFLDNLTNIYVR 781 (1193)
Q Consensus 758 -~y~~~~a~~~l~~fi~~lsnwYi~ 781 (1193)
++++..|+..|.+++.. .|-++.
T Consensus 420 DDlntp~Al~~l~~~vk~-~N~~~~ 443 (557)
T PLN02946 420 DDLHTPVALAALSEPLKT-INDLLH 443 (557)
T ss_pred hccChHHHHHHHHHHHHH-HHHHhh
Confidence 89999999999999974 555653
No 53
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=4.2e-28 Score=290.30 Aligned_cols=125 Identities=12% Similarity=0.102 Sum_probs=107.8
Q ss_pred EEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHH
Q 000999 42 YVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEAC 121 (1193)
Q Consensus 42 f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c 121 (1193)
--+|.-=|++-+.+||||+++++..|++.||.++.||+|.+..|.|+||-+|...+++ .|+++.
T Consensus 249 V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e-~G~sp~--------------- 312 (699)
T PRK14535 249 VRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAE-NGETIG--------------- 312 (699)
T ss_pred eEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHH-cCCCHH---------------
Confidence 3445555778899999999999999999999999999999999999999999999975 688654
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeece-eccccCCC
Q 000999 122 RSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFK-VMPYSTGC 186 (1193)
Q Consensus 122 ~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~-~v~wcp~~ 186 (1193)
+++.+|...+.+.+++||+ ..+. +.|...+|+..+..++.+|.++|++|++.. -|+||.++
T Consensus 313 -ela~~y~~~F~~d~~~LnI--~~p~-~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~ 374 (699)
T PRK14535 313 -ELTARFIQAMHEDADALGV--LRPD-IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE 374 (699)
T ss_pred -HHHHHHHHHHHHHHHHcCC--CCCc-EeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc
Confidence 4888999999999999995 4444 577788999999999999999999998743 67787664
No 54
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=2e-26 Score=280.34 Aligned_cols=118 Identities=25% Similarity=0.317 Sum_probs=104.5
Q ss_pred CCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHH
Q 000999 38 CQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKY 117 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f 117 (1193)
.+++++++-++|||||.+|+||+++.++.|+++|+.++.||+|.+..|+|++|.++...+.+. +.
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~-~~-------------- 173 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASL-EL-------------- 173 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHH-HH--------------
Confidence 345799999999999999999999999999999999999999999999999999999877642 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCcee
Q 000999 118 NEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVY 174 (1193)
Q Consensus 118 ~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy 174 (1193)
.++.+++.+...+++++++|| |.||..+.+.+..+...+.+++.+|.++|++|
T Consensus 174 --~~~~~~~~~~~~~~~~l~~Lg--I~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y 226 (507)
T PRK01611 174 --LWRKAVDISLDEIKEDLDRLG--VHFDVWFSESELYYNGKVDEVVEDLKEKGLLY 226 (507)
T ss_pred --HHHHHHHHHHHHHHHHHHHcC--CeeeEEeecCcchhcchHHHHHHHHHHCCCEE
Confidence 355688899999999999999 66666677777777889999999999999999
No 55
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=4.2e-27 Score=277.56 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=109.4
Q ss_pred EEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccce---------eccc-chhhHHHHHHHHHHcCCCCcchhhh
Q 000999 42 YVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTR---------RFGW-DCHGLPVENEIDKTLGIKRRDDVFQ 111 (1193)
Q Consensus 42 f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~---------~~G~-D~hGlpie~~v~k~lg~~~~~~~~~ 111 (1193)
--+|.-=|++-..+|+||+++++..|++.||.+++||+|.+ ..|. |+||-+|...+++ .|+++.
T Consensus 22 v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~-~g~~~~----- 95 (481)
T PRK14534 22 VKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARE-RGLTVY----- 95 (481)
T ss_pred eEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHH-cCCCHH-----
Confidence 45566667888999999999999999999999999999999 7888 7788889998875 688754
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCCC
Q 000999 112 MGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTGC 186 (1193)
Q Consensus 112 ~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~~ 186 (1193)
+++.+|...+.+.+++|| |.++..+.| .+++++.+..++.+|.+||++|.....|+||+.+
T Consensus 96 -----------e~a~~~~~~f~~d~~~Ln--i~~~~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~ 156 (481)
T PRK14534 96 -----------EISRFFTEAFFDDCKKLN--IVYPDKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC 156 (481)
T ss_pred -----------HHHHHHHHHHHHHHHHcC--CCCCceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc
Confidence 488999999999999999 666667766 6899999999999999999999998888888765
No 56
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.95 E-value=1.4e-27 Score=257.00 Aligned_cols=86 Identities=28% Similarity=0.330 Sum_probs=78.8
Q ss_pred CceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCc
Q 000999 597 PGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPV 676 (1193)
Q Consensus 597 Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~ 676 (1193)
|.|+++.|.|++++|...+++.+.+++++ ||.++++|+.+++.+|+|||||+||+|+|.+++++||+|++|||++++.+
T Consensus 128 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~ 206 (213)
T cd00672 128 TFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206 (213)
T ss_pred CccEEeecCCCCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCc
Confidence 45789999999999999999999999998 99999999888889999999999999999999999999999999998765
Q ss_pred ccccccccc
Q 000999 677 VRAETLRFK 685 (1193)
Q Consensus 677 ~~~~d~~Fs 685 (1193)
.++++|+
T Consensus 207 --~~~l~f~ 213 (213)
T cd00672 207 --RSPLDFS 213 (213)
T ss_pred --CCCCCCC
Confidence 5677775
No 57
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.95 E-value=2e-26 Score=263.60 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=97.2
Q ss_pred CCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchh--------hHHHHHHHHHHcCCCCcchhh
Q 000999 39 QPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCH--------GLPVENEIDKTLGIKRRDDVF 110 (1193)
Q Consensus 39 ~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~h--------Glpie~~v~k~lg~~~~~~~~ 110 (1193)
+++|+|..|++ |||.|||||++..+..|+++||+||+|++|.+++|||+| |+|.+ +++.+|..-...-.
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~~~G~pi~~ip~ 94 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQYIGMPLSSVPD 94 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHHhcCccchhchh
Confidence 45688888885 999999999999999999999999999999999999999 68776 66778875322111
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCce
Q 000999 111 QMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLV 173 (1193)
Q Consensus 111 ~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGli 173 (1193)
..| .|.+++++|...+++.+.+||++ ++..+.|-....-+....++..|.+++.|
T Consensus 95 p~g------~~~~~~d~~~~~f~~~l~~lgi~--~d~~~~T~~y~~g~~~~~i~~~L~~~~~I 149 (353)
T cd00674 95 PFG------CCESYAEHFERPFEESLEKLGIE--VEFISQSQMYKSGLYDENILIALEKRDEI 149 (353)
T ss_pred hcC------CCHHHHHHHHHHHHHHHHHcCCe--eeeeecCCchhhchHHHHHHHHHHHCChH
Confidence 223 36789999999999999999955 44333444444457788888888887765
No 58
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.92 E-value=1.7e-24 Score=229.73 Aligned_cols=182 Identities=46% Similarity=0.718 Sum_probs=147.8
Q ss_pred ccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhH
Q 000999 684 FKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYT 763 (1193)
Q Consensus 684 Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~ 763 (1193)
||++++.+..+++++||||+++|+.++.... ++.|..........+.+|+||+++++.+++.++++|++|+|+.
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~------~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~ 74 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLD------GFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYT 74 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 6788898876669999999999997643311 1222110000123578999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCeeec
Q 000999 764 VVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIHFC 843 (1193)
Q Consensus 764 a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh~~ 843 (1193)
|++.++.|++.+++||++.+|+++|+..++..+..+..++.+++..++++|||||||+|||||++++.......+||+.+
T Consensus 75 a~~~l~~f~~~~~~~Y~e~~K~~~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~~~~~si~~~ 154 (183)
T cd07961 75 AVRALLEFIDELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLL 154 (183)
T ss_pred HHHHHHHHHHHhhhhHhhhchHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCCCceeee
Confidence 99999999988889999999999987643345567888999999999999999999999999999974100013699999
Q ss_pred cCCCCcCC-ccHHHHHHHHHHHHHHHHHH
Q 000999 844 SFPKEEGK-RDERIEQSVLRMMTIIDLAR 871 (1193)
Q Consensus 844 ~~P~~~~~-~D~~le~~~~~~~~vi~~~R 871 (1193)
.||+++.. .|+.++..++.++++++.+|
T Consensus 155 ~wP~~~~~~~~~~~~~~~~~l~~~i~~~r 183 (183)
T cd07961 155 DWPEVDESLIDEELEEAMELVREIVELGR 183 (183)
T ss_pred cCCCCcccccCHHHHHHHHHHHHHHHhhC
Confidence 99998876 89999999999999998876
No 59
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.90 E-value=7.6e-23 Score=247.19 Aligned_cols=100 Identities=22% Similarity=0.308 Sum_probs=81.0
Q ss_pred CCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhh--------HHHHHHHHHHcCCCCcchh
Q 000999 38 CQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHG--------LPVENEIDKTLGIKRRDDV 109 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hG--------lpie~~v~k~lg~~~~~~~ 109 (1193)
++++++|..|+ +|||.|||||+...+..|+++||.|++|++|.+.+|+|.|| +|....+++.+|..-...-
T Consensus 21 ~~~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p 99 (510)
T PRK00750 21 KKPPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIP 99 (510)
T ss_pred CCCcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCC
Confidence 34458887777 59999999999999999999999999999999999999998 7874456777887522111
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Q 000999 110 FQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFR 146 (1193)
Q Consensus 110 ~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~ 146 (1193)
...|. |.+++++|...+++.++++| |+++
T Consensus 100 ~p~G~------~~~~~~~~~~~~~~~~~~~g--i~~d 128 (510)
T PRK00750 100 DPFGC------HESYAEHFNAPLREFLDRFG--IEYE 128 (510)
T ss_pred CCCCC------chHHHHHHHHHHHHHHHHcC--CceE
Confidence 12332 67899999999999999999 5555
No 60
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.89 E-value=1.7e-22 Score=213.82 Aligned_cols=176 Identities=24% Similarity=0.374 Sum_probs=141.0
Q ss_pred ccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhH
Q 000999 684 FKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYT 763 (1193)
Q Consensus 684 Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~ 763 (1193)
|+.+.+.+ ++++++|+||+++|+.+.... +.+..........+..|+|++++++.+++.++++|++|+|+.
T Consensus 1 i~~~~~~~-~~~~~~Kl~N~~rf~~~~~~~--------~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~ 71 (180)
T cd07960 1 ISDEILKQ-VAEAYRKIRNTFRFLLGNLND--------FDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHK 71 (180)
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHHcccC--------CCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34556666 478999999999999765532 221110000123578999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhccccCCC-ChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCCCCCCee
Q 000999 764 VVPYLLKFL-DNLTNIYVRFNRKRLKGRS-GEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNMRKVGSGSEESIH 841 (1193)
Q Consensus 764 a~~~l~~fi-~~lsnwYi~~~r~rl~~~~-~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L~~~~~~~~~SVh 841 (1193)
|++.+++|+ +++||||++.+|+|++++. ++.++..+..+++.+++.++++|+|||||+||+||+.|+.. .+.+|||
T Consensus 72 a~~~i~~f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~--~~~~~v~ 149 (180)
T cd07960 72 VYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGE--KKEESVF 149 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcccc--CCCCCee
Confidence 999999999 5799999999999998642 23344668889999999999999999999999999999741 0147999
Q ss_pred eccCCCCcCC-ccHHHHHHHHHHHHHHHHH
Q 000999 842 FCSFPKEEGK-RDERIEQSVLRMMTIIDLA 870 (1193)
Q Consensus 842 ~~~~P~~~~~-~D~~le~~~~~~~~vi~~~ 870 (1193)
.++||+++.. .|++++..|+.+++|..++
T Consensus 150 ~~~wP~~~~~~~~~~~~~~~~~~~~i~~~~ 179 (180)
T cd07960 150 LEDWPELPEEWKDEELEEKWEKLLALRDEV 179 (180)
T ss_pred ccCCCCCcccccCHHHHHHHHHHHHHHHhh
Confidence 9999999877 8999999998888776543
No 61
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.5e-22 Score=230.61 Aligned_cols=148 Identities=22% Similarity=0.287 Sum_probs=119.7
Q ss_pred eeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCccc
Q 000999 599 QFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPVVR 678 (1193)
Q Consensus 599 d~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~~~ 678 (1193)
|+|..|.|.++.|.-.-++.|.+.+|..||-+..+|.-.+.-+|+|||||+||+++..+++++|++.+|||+|+++..
T Consensus 223 DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HY-- 300 (464)
T COG0215 223 DIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHY-- 300 (464)
T ss_pred ceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHh--
Confidence 899999999999999999999999999999666555444447999999999999999999999999999999998766
Q ss_pred cccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHH-h
Q 000999 679 AETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEM-E 757 (1193)
Q Consensus 679 ~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~-e 757 (1193)
..+++||++.+.+. ++.+.+|+|+++.+...... . ... ........+.++| +
T Consensus 301 R~pl~fsee~L~~A-~~~l~rl~~~~~~~~~~~~~--------~----------~~~--------~~~~~~~~f~~al~D 353 (464)
T COG0215 301 RSPLDFSEELLEEA-KKALERLYNALRRLRDLAGD--------A----------ELA--------DLKEFEARFREALDD 353 (464)
T ss_pred CCccccCHHHHHHH-HHHHHHHHHHHHHHHhhccc--------c----------ccc--------hhHHHHHHHHHHHHh
Confidence 57899999999876 77788899977665432210 0 000 3345556677788 5
Q ss_pred cCChhHHHHHHHHHHHHH
Q 000999 758 GYRLYTVVPYLLKFLDNL 775 (1193)
Q Consensus 758 ~y~~~~a~~~l~~fi~~l 775 (1193)
++++..|+..|.+++...
T Consensus 354 Dfnt~~al~~l~~l~~~~ 371 (464)
T COG0215 354 DFNTPKALAVLFELAKEI 371 (464)
T ss_pred ccCcHHHHHHHHHHHHHH
Confidence 899999999999998644
No 62
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.88 E-value=2.9e-22 Score=206.17 Aligned_cols=149 Identities=26% Similarity=0.519 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-HHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCC
Q 000999 738 DQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFL-DNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAP 816 (1193)
Q Consensus 738 D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi-~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaP 816 (1193)
|+||+++++.+++.++++|++|+|++|+..+++|+ +++||||++.+++|++++.+.+.+. ++.+++++++.+++||+|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll~P 79 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILLSP 79 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhccCC
Confidence 89999999999999999999999999999999985 8999999999999998876655555 999999999999999999
Q ss_pred CchhHHHHHHHHhhccCCCCCCCeeeccCCCCcCC-ccHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCCccee
Q 000999 817 FTPFFTEALYQNMRKVGSGSEESIHFCSFPKEEGK-RDERI-EQSVLRMMTIIDLARNIRERHNKPLKSPLREM 888 (1193)
Q Consensus 817 f~PfiaEei~~~L~~~~~~~~~SVh~~~~P~~~~~-~D~~l-e~~~~~~~~vi~~~R~~R~~~~i~~k~pl~~~ 888 (1193)
||||+||++||+|....-+..+||+.+.||+ +.. .+..+ +..++.+++++..+|++|++.+++.+.|++.+
T Consensus 80 ~~P~~aEeiw~~l~~~~~~~~~si~~~~~p~-~~~~~~~~~~~~~~~~~~~v~~~i~~~r~~~~i~~~~~~~v~ 152 (153)
T PF08264_consen 80 FMPFIAEEIWQRLKSEKLGEKSSIFLEKWPE-DPEFIDEELEEEAFEILKEVVQVIRKIRKEKNIKPKEPLKVV 152 (153)
T ss_dssp TSHHHHHHHHHHCTTHHTTSSSSGGGS------GGGGHHHH-HHHHHHHHHHHHHHHHHHHCCEESTTCGEEEE
T ss_pred CCcHHHHHHHHHhhhccCCCCCeeeeCCCCC-ChhhhcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCcc
Confidence 9999999999887321113468999999998 555 66666 88999999999999999999999999998643
No 63
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.83 E-value=7.7e-21 Score=210.00 Aligned_cols=124 Identities=17% Similarity=0.238 Sum_probs=95.9
Q ss_pred cEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHH
Q 000999 41 EYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEA 120 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~ 120 (1193)
+..+|.-=|++-..+||||+++++.-|++.||.+..||+|.+..+.-.-.=.|...+.+ .|++.
T Consensus 8 ~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~-~g~~~--------------- 71 (300)
T PF01406_consen 8 KVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRARE-EGVSP--------------- 71 (300)
T ss_dssp EEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHH-TTS-H---------------
T ss_pred eEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHh-ccCCH---------------
Confidence 45566666777799999999999999999999999999999999999998888888764 67754
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeec-eeccccC
Q 000999 121 CRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGF-KVMPYST 184 (1193)
Q Consensus 121 c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~-~~v~wcp 184 (1193)
++++.+|.+++.+.+++||+.-. ...+--.+++..+.....+|.++|+.|... .-|+|+.
T Consensus 72 -~ela~~y~~~f~~dm~~Lnv~~p---~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv 132 (300)
T PF01406_consen 72 -QELARRYEEEFFEDMKALNVLPP---DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDV 132 (300)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-------SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-C
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCC---ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEee
Confidence 34888999999999999995432 223344589999999999999999999986 6665543
No 64
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.81 E-value=2e-17 Score=204.05 Aligned_cols=206 Identities=11% Similarity=0.048 Sum_probs=137.0
Q ss_pred EEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChh-----------------------h
Q 000999 601 IAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPV-----------------------E 657 (1193)
Q Consensus 601 ~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~-----------------------~ 657 (1193)
++.|.||. ++|..+..+..++ |-++.+++.+|||.+. +|.|||||+||+|+|. +
T Consensus 332 ~V~g~~q~-~h~~~v~~~l~~l-G~~~~~~l~h~~~~~V-~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~ 408 (566)
T TIGR00456 332 YVWGSDHH-LHIAQFFAILEKL-GFYKKKELIHLNFGMV-PLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEED 408 (566)
T ss_pred EEecCcHH-HHHHHHHHHHHHc-CCCCCCceEEEEEEEE-ECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHH
Confidence 33444554 4566655444443 3344578999999885 6899999999999998 7
Q ss_pred hHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchh
Q 000999 658 VINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVL 737 (1193)
Q Consensus 658 li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 737 (1193)
+++.+|.|++||++++..+ ..|..|+++.+.+. +. ...+.+.++..++..+-++.+.+..+..... ....++.
T Consensus 409 ~~~~vg~dAvRy~~L~~~~--~~d~~Fd~d~~~~~-~~---n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~-~~~~~~~ 481 (566)
T TIGR00456 409 VADAVGIGAVRYFDLSQNR--ETHYVFDWDAMLSF-EG---NTAPYIQYAHARICSILRKADIDGEKLIADD-FSLLEEK 481 (566)
T ss_pred HHHHhcccceeeHHhhcCC--CCCceecHHHHhcc-CC---CCchhHHHHHHHHHHHHHhcccccccccccc-cCCCCHH
Confidence 8888999999999998764 78999999876543 22 1233445555555444333221111110000 0122456
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCCh---HHHHHHHHHHHHHHHHHHHhc
Q 000999 738 DQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGE---DDCRIALSTLYNVLLTSCKVM 814 (1193)
Q Consensus 738 D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~---~~~~~a~~tL~~vL~~l~~LL 814 (1193)
++.++..+..+.+.+.++|++++++.++..+++++.. .|-|++.+ |..++.++ ..|.........+|...+.||
T Consensus 482 e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~-~N~yy~~~--~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lL 558 (566)
T TIGR00456 482 EKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASL-FSSFYKAC--PVLDAENENLAAARLALLKATRQTLKNGLQLL 558 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH-HHHHHhcC--ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7789999999999999999999999999999999975 55566544 44443322 234444556677788888877
Q ss_pred CCCch
Q 000999 815 APFTP 819 (1193)
Q Consensus 815 aPf~P 819 (1193)
.-=+|
T Consensus 559 GI~~~ 563 (566)
T TIGR00456 559 GIEPP 563 (566)
T ss_pred CCCcc
Confidence 64443
No 65
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.2e-17 Score=186.21 Aligned_cols=168 Identities=17% Similarity=0.180 Sum_probs=131.0
Q ss_pred ceeEEecccCccchHHHHHHHHHHccCCCCccEEEEE-eeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhCCc
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICN-GLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINSPV 676 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~~~ 676 (1193)
.|++..|.|.-+.|.-.-++.+.+.++..+|-|.++| |++. .+|+|||||++|+|+..+++++|.+++||++++.+..
T Consensus 259 lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~-i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~w 337 (586)
T KOG2007|consen 259 LDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLT-INGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQW 337 (586)
T ss_pred cceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeee-eccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999666555 7776 6899999999999999999999999999999987654
Q ss_pred cccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 000999 677 VRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEM 756 (1193)
Q Consensus 677 ~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~ 756 (1193)
.++++|+...+..+ .++...+.|.+..+....+ . ..+ .+.....+..++..+..+...|..++
T Consensus 338 --r~~ldYs~s~m~~a-~q~e~~~~~ff~~~~al~~----~----~~~------~~~~~~~e~~l~~~~~~t~~~vh~al 400 (586)
T KOG2007|consen 338 --RSPLDYSDSTMEQA-LQLEKSLNNFFLDVKALLR----G----AKP------FEKLSEKEAELLEDFGKTQTAVHAAL 400 (586)
T ss_pred --cCcCCchHHHHHHH-HHHHHHHHHHHHHHHHHHh----c----cch------hhccChHHHHHHHhhhhHHHHHHHHH
Confidence 67899999876654 3333333342222222111 1 001 12356677889999999999998888
Q ss_pred -hcCChhHHHHHHHHHHHHHHHHHHHhhh
Q 000999 757 -EGYRLYTVVPYLLKFLDNLTNIYVRFNR 784 (1193)
Q Consensus 757 -e~y~~~~a~~~l~~fi~~lsnwYi~~~r 784 (1193)
++++...++..+.+++. .+|-||+...
T Consensus 401 ~d~~dT~~v~~~~~~lvs-~~N~~i~~~~ 428 (586)
T KOG2007|consen 401 CDNFDTPRVMEAIRELVS-QGNAYIRESG 428 (586)
T ss_pred HhccccHHHHHHHHHHHh-hhhHHHHHhc
Confidence 79999999999999996 6999998765
No 66
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.73 E-value=9.9e-17 Score=192.65 Aligned_cols=96 Identities=18% Similarity=0.143 Sum_probs=76.7
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchh--------hHHHHHHHHHHcCCCCcchhhh
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCH--------GLPVENEIDKTLGIKRRDDVFQ 111 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~h--------Glpie~~v~k~lg~~~~~~~~~ 111 (1193)
.+++|..|-+ |||.|||||+...+..|+++||.|++|++|.+++|+|+| ++| ...++.+|..-...-..
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p--~~~~~ylG~Pl~~vpdp 94 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP--EELETYLGMPLTRIPDP 94 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc--HHHHHhCCCcceecCCC
Confidence 3688988888 999999999999999999999999999999999999999 667 23556666432111112
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q 000999 112 MGIDKYNEACRSIVTRYVEEWEQIITRTGRWID 144 (1193)
Q Consensus 112 ~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD 144 (1193)
+| .|.+++++|...+.+.|.++|+.++
T Consensus 95 ~g------~~~s~~~h~~~~~~~~l~~~gi~~e 121 (515)
T TIGR00467 95 EG------CKTSYAEHFLIPFLESLPVLGINPE 121 (515)
T ss_pred CC------CcHHHHHHHHHHHHHHHHHcCCeEE
Confidence 34 2567999999999999999995443
No 67
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.66 E-value=7.2e-17 Score=168.70 Aligned_cols=164 Identities=24% Similarity=0.336 Sum_probs=97.1
Q ss_pred CeEEEEeeecCCCCcceEEEeecCCCccCCCceEEEccCccEEEEEeccCCeEEEEehhhhhccCCCCCCCCCCCCCCCC
Q 000999 205 PEIMVSFPIVGDPEKAAFVAWTTTPWTLPSNLALCVNANFTYVKVRNKYTGKIYVVAESRLSALPSEKPKSSAANGPGGD 284 (1193)
Q Consensus 205 ~~~~v~f~l~~~~~~~~l~vwTTtPwTl~~n~al~V~p~~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~ 284 (1193)
..+.|+|++.+. + ..|-|+||||+||+|.++||+.|+++.++-..+. ...+..+..+.
T Consensus 8 ~G~~i~F~i~~~-~-~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~--------~~~l~~fi~~~------------ 65 (185)
T PF13603_consen 8 EGAEIDFKIKGS-N-EKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAEN--------NPELQEFIEKC------------ 65 (185)
T ss_dssp EEEEEEEEBTTS-S-CEEEEEES-GGGGGG--EEEEETTSCHHHHCTTT--------HHHHHHHHHHH------------
T ss_pred ccEEEEEEecCC-C-CEEEEEECCcchhhCceEEEECCCCHHHHhhhhh--------hhhHHHHHHHH------------
Confidence 357899999876 2 5899999999999999999999999844311000 01111111100
Q ss_pred CCCCcccccccCCCcccchhhhhcccccccceEeeeeeeccccccccc-ccCcccccccCCceEEEEecCccccCCCCCc
Q 000999 285 SKKSSSKTKVSSGKKAQDGELARSAENNESYEKLGEVFSGAYLVGKKY-EPLFDYFKEFSDVAFRVIADNYVTSDSGTGI 363 (1193)
Q Consensus 285 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~G~~L~G~~y-~Pl~~~~~~~~~~~~~vi~~~~V~~~~GTGi 363 (1193)
...... .+. ... ....|- ..|... +|+ +++.+||+.++||.+++|||+
T Consensus 66 ---~~~~~~------------~~~---~~~-----~~k~Gv-~tg~~aihP~-------t~~~iPI~va~yVl~~yGtgA 114 (185)
T PF13603_consen 66 ---KKIKNS------------ERN---KDF-----KEKEGV-FTGLYAIHPL-------TGKKIPIYVANYVLMDYGTGA 114 (185)
T ss_dssp ---HTS-HH------------HHH---HCS-----SS--EE-EEEEEEE-TT-------TS-EEEEEEETTS-TTSTTSE
T ss_pred ---hcCCHh------------Hhh---hhc-----cccccC-cCCCEEECCC-------CCCCccEEEECceeecCCcce
Confidence 000000 000 000 011222 233333 465 578999999999999999999
Q ss_pred eeecCCCChhhHHHHHHcCCCccCCCcceee-------------cCCCccccCCCCCCCcchhhhhHHHHHHHH
Q 000999 364 VHCAPAFGEDDYRVCIENQIINKGENLIVAV-------------DDDGCFTGKITDFSGRYVKDADKDIIEALK 424 (1193)
Q Consensus 364 Vh~aPahg~~D~~~~~~~~l~~~~~~~~~~v-------------d~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~ 424 (1193)
||.+|||++.||++|++|||.-. +++.+. .++|.+. +.++|.||..++|+++|++.|+
T Consensus 115 VmgvPahD~rD~~FAk~~~lpi~--~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 115 VMGVPAHDERDFEFAKKYNLPIK--QVIKPKDDNEEIDNKQEAYTGDGILI-NSGEFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp EEE-CCC-HHHHHHHHHHT--------EEBSSSS---STTSS---S--EE--SSGGGTTSBHHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHcCCCee--EEEcCCCCcccccccccCcCCCEEEE-eCCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998211 122222 2346666 4689999999999999999985
No 68
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=6.8e-13 Score=161.30 Aligned_cols=179 Identities=14% Similarity=0.151 Sum_probs=118.9
Q ss_pred EEEeeEEccCCccccccCCCCCChhhhHhhcC----------------------hhHHHHhHhhCCccccccccccHhHH
Q 000999 632 ICNGLVLAEDGKKMSKKLKNYPSPVEVINDYG----------------------ADALRLYLINSPVVRAETLRFKKDGV 689 (1193)
Q Consensus 632 ~~hG~vld~~G~KMSKS~GN~v~P~~li~~yG----------------------aDalR~yL~~~~~~~~~d~~Fs~~~v 689 (1193)
...|++.+.+|.||||..||+|..+++++.-| .||+||++++..+ ..++.|+++.+
T Consensus 371 ~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~--~~~~~Fd~d~~ 448 (577)
T COG0018 371 QGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSR--DKDYVFDWDKA 448 (577)
T ss_pred EEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCC--CCCcEeeHHHH
Confidence 34467777789999999999999999999988 9999999998765 67899999887
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000999 690 FAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLL 769 (1193)
Q Consensus 690 ~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~ 769 (1193)
.+. .. |+..- +.|...++.++-++.+....+..............+.++..|..+..-+.++.+.+++|..+..++
T Consensus 449 lsf-eg--Nt~pY-vQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~ 524 (577)
T COG0018 449 LSF-EG--NTAPY-VQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLY 524 (577)
T ss_pred Hhc-cC--CCchh-HHHHHHHHHHHHHhccccccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHH
Confidence 653 11 11111 122223333332222211111110000001122357789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCh---HHHHHHHHHHHHHHHHHHHhcCCCch
Q 000999 770 KFLDNLTNIYVRFNRKRLKGRSGE---DDCRIALSTLYNVLLTSCKVMAPFTP 819 (1193)
Q Consensus 770 ~fi~~lsnwYi~~~r~rl~~~~~~---~~~~~a~~tL~~vL~~l~~LLaPf~P 819 (1193)
++...|+.||=. -++-+.++. ..|..-......+|.+.+.||.-=+|
T Consensus 525 ~LA~~Fn~fY~~---~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~LLGI~~~ 574 (577)
T COG0018 525 DLAGSFNSFYNA---CPVLGAENEELRAARLALVKATRQVLKNGLDLLGIEAP 574 (577)
T ss_pred HHHHHHHHHHhh---CCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999943 344443332 23344445667778888887765444
No 69
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.60 E-value=1.1e-14 Score=146.85 Aligned_cols=134 Identities=29% Similarity=0.464 Sum_probs=107.8
Q ss_pred ccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhH
Q 000999 684 FKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYT 763 (1193)
Q Consensus 684 Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~ 763 (1193)
|+++++.. +++++.|+||+++|+..+... +.+.... .......|+|+++.++.+++.+.++|++|+|++
T Consensus 1 ~~~~~~~~-~~~~l~k~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~ 69 (135)
T cd07962 1 FDEKRVEG-GRNFCNKLWNAARFVLMNLED--------DDEPEED--PESLSLADRWILSRLNKTVEEVTEALENYRFSE 69 (135)
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHHcccc--------cCccccc--cccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 67888876 589999999999988553221 1110000 113356789999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 000999 764 VVPYLLKFLD-NLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNM 829 (1193)
Q Consensus 764 a~~~l~~fi~-~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L 829 (1193)
|++.+++++. +++|+|++..++|.... +.++..+.+.++.++++.++++|+|||||+||++|+.|
T Consensus 70 al~~i~~~~~~~~~N~Yi~~~~pW~~~~-~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 70 AATALYEFFWNDFCDWYLELVKPRLYGE-DEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 9999999995 59999999999986542 23456678889999999999999999999999999875
No 70
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.60 E-value=1.1e-12 Score=161.47 Aligned_cols=175 Identities=14% Similarity=0.164 Sum_probs=116.1
Q ss_pred EEEEEeeEEccCCccccccCCCCCChhhhHhh-------------------------cChhHHHHhHhhCCccccccccc
Q 000999 630 NLICNGLVLAEDGKKMSKKLKNYPSPVEVIND-------------------------YGADALRLYLINSPVVRAETLRF 684 (1193)
Q Consensus 630 ~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~-------------------------yGaDalR~yL~~~~~~~~~d~~F 684 (1193)
.++..|+|+. +|+||||.+||+|..+|++++ -|.||+||++++..+ ..++.|
T Consensus 358 ~h~~~g~V~~-~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~--~~~~~F 434 (562)
T PRK12451 358 EHVPFGLILK-DGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNER--MHNIEF 434 (562)
T ss_pred EEEeeeeEec-CCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCC--CCCceE
Confidence 3577888884 899999999999999999996 789999999998765 678999
Q ss_pred cHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHH
Q 000999 685 KKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTV 764 (1193)
Q Consensus 685 s~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a 764 (1193)
+++.+.+. +..-++ -+.|...++.++-++.+..+ .... ..-.++..+-++..+..+...+.++|++++++.+
T Consensus 435 d~d~~l~~-~g~t~p---YiQYa~AR~~SIlrka~~~~--~~~~--~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~ 506 (562)
T PRK12451 435 SLENMLKF-EGETGP---YVQYTHARACSILRKESVEF--ETCT--FALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVI 506 (562)
T ss_pred CHHHHhCc-CCCccH---HHHHHHHHHHHHHHhcCCCc--cccc--cCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99886442 211122 12233334433322222111 1000 0112455677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCC-hHHHHHHHHHHHHHHHHHHHhcCCCc
Q 000999 765 VPYLLKFLDNLTNIYVRFNRKRLKGRSG-EDDCRIALSTLYNVLLTSCKVMAPFT 818 (1193)
Q Consensus 765 ~~~l~~fi~~lsnwYi~~~r~rl~~~~~-~~~~~~a~~tL~~vL~~l~~LLaPf~ 818 (1193)
+..+++++..++.+| +.++ +..+.. ...|.........+|...+.||.-=+
T Consensus 507 ~~yl~~LA~~fN~fy-~~~~--Vl~~~~~~~~RL~L~~a~~~vL~~gL~LLGI~~ 558 (562)
T PRK12451 507 SKYVLDVAQSFNKYY-GNVR--ILEESAEKDSRLALVYAVTVVLKEGLRLLGVEA 558 (562)
T ss_pred HHHHHHHHHHHHHHH-HhCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999998665555 4332 222211 12344444566777777777775433
No 71
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.57 E-value=1.1e-14 Score=158.18 Aligned_cols=121 Identities=20% Similarity=0.175 Sum_probs=105.1
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
++=-.+|||||.||+||+++.++.|+++||.++.||+|.+..|+|.||.+|+..+++. + .++
T Consensus 3 ~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-~-----------------~~~ 64 (212)
T cd00671 3 LVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-E-----------------KWR 64 (212)
T ss_pred EEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH-H-----------------HHH
Confidence 4445789999999999999999999999999999999999999999999999988652 1 277
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeeceeccccCC
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKVMPYSTG 185 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~v~wcp~ 185 (1193)
++++++.+.+.+.+++||+ .+|..+.|.+. ...+..++.+|.++|++|+..-.+.+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~L~i--~~d~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~ 123 (212)
T cd00671 65 KLVEESIKADLETYGRLDV--RFDVWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLT 123 (212)
T ss_pred HHHHHHHHHHHHHHHHhCC--cCceecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEech
Confidence 8999999999999999995 46666677654 88999999999999999988776666654
No 72
>PLN02286 arginine-tRNA ligase
Probab=99.55 E-value=9.3e-12 Score=153.53 Aligned_cols=180 Identities=13% Similarity=0.157 Sum_probs=122.8
Q ss_pred EEEEEeeEEccCCccccccCCCCCChhhhHh-----------------------------hcChhHHHHhHhhCCccccc
Q 000999 630 NLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-----------------------------DYGADALRLYLINSPVVRAE 680 (1193)
Q Consensus 630 ~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-----------------------------~yGaDalR~yL~~~~~~~~~ 680 (1193)
.++..|+|+..+|+||||.+||+|+.+|+++ ..|.||+||++++..+ ..
T Consensus 364 ~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~--~~ 441 (576)
T PLN02286 364 EHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNR--LT 441 (576)
T ss_pred EEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCC--CC
Confidence 4688899987899999999999999999999 3578999999998765 67
Q ss_pred cccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCC-CCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcC
Q 000999 681 TLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPF-IPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGY 759 (1193)
Q Consensus 681 d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y 759 (1193)
++.|+++.+.+. +..-.+ | +.|...++.++-++.+... ....... ....++..+-++..|..+...+.++.+++
T Consensus 442 ~~~Fd~d~~l~~-~g~t~p-Y--lQYahAR~~SIlrKa~~~~~~~~~~~~-~~l~~~~E~~L~~~l~~fp~vv~~a~~~~ 516 (576)
T PLN02286 442 NYTFSFDQMLDL-KGNTAV-Y--LLYAHARICSIIRKSGKDIDELKKTGK-IVLDHPDERALGLHLLQFPEVVEEACTDL 516 (576)
T ss_pred CCccCHHHHHhh-cCCChH-H--HHHHHHHHHHHHHhccCcccccccccc-ccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999986543 211111 1 2233334433322222110 0000000 01124566788999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCch
Q 000999 760 RLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTP 819 (1193)
Q Consensus 760 ~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~P 819 (1193)
+.+..+..++++...|+.+|=. .++.++.+...|..-......+|...+.||.-=+|
T Consensus 517 ~P~~l~~Yl~~LA~~F~~fY~~---~~Vl~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~~ 573 (576)
T PLN02286 517 LPNRLCEYLYNLSEKFTKFYSN---CKVNGSEEETSRLLLCEATAIVMRKCFHLLGITPL 573 (576)
T ss_pred CchHHHHHHHHHHHHHHHHHhc---CccCCCCchhHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999943 24433222234455556677788888888864444
No 73
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.51 E-value=1.1e-13 Score=137.82 Aligned_cols=95 Identities=15% Similarity=0.218 Sum_probs=84.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCC-ChHHHHHHHHHHHHHHHHHHH
Q 000999 734 SNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRS-GEDDCRIALSTLYNVLLTSCK 812 (1193)
Q Consensus 734 ~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~-~~~~~~~a~~tL~~vL~~l~~ 812 (1193)
.+..|+|++++++++++.+.++|++|+|++|++.+++|++ ++|+|++..++|...++ +.+....++.++.++++.+++
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~ 112 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELAR-AANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAI 112 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999995 89999999999865533 334566788899999999999
Q ss_pred hcCCCchhHHHHHHHHh
Q 000999 813 VMAPFTPFFTEALYQNM 829 (1193)
Q Consensus 813 LLaPf~PfiaEei~~~L 829 (1193)
+|+|||||+||+||+.|
T Consensus 113 lL~P~~P~~aeei~~~l 129 (129)
T cd07957 113 LLSPFMPETAEKILDQL 129 (129)
T ss_pred HhcCCCChHHHHHHHhC
Confidence 99999999999999875
No 74
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.48 E-value=3.4e-13 Score=132.20 Aligned_cols=84 Identities=14% Similarity=0.301 Sum_probs=75.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH-HHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHH
Q 000999 734 SNVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYL-LKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCK 812 (1193)
Q Consensus 734 ~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l-~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~ 812 (1193)
.+..|+|+++++++++++++++|++|+|++|++.+ +.|.+ .+|+|++..++| .+..+++++++.+++
T Consensus 33 ~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~-~~~~Y~~~~~~~-----------~~~~~~~~~l~~~~~ 100 (117)
T cd07959 33 LTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQN-DLDWYRERGGAG-----------MNKDLLRRFIEVWTR 100 (117)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHhCcc-----------chHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999997 77765 799999987775 234689999999999
Q ss_pred hcCCCchhHHHHHHHHh
Q 000999 813 VMAPFTPFFTEALYQNM 829 (1193)
Q Consensus 813 LLaPf~PfiaEei~~~L 829 (1193)
+|+||+||+||++|+.|
T Consensus 101 lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 101 LLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHcCcchHhHHHHHhhC
Confidence 99999999999999875
No 75
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.38 E-value=3.6e-12 Score=124.64 Aligned_cols=117 Identities=17% Similarity=0.263 Sum_probs=90.5
Q ss_pred ccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhH
Q 000999 684 FKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYT 763 (1193)
Q Consensus 684 Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~ 763 (1193)
|+++++.+ ++++++++||.+.+..... .|.... ......|+|++++++.+++.+.++|++|+|++
T Consensus 1 w~~~~~~~-~~n~l~R~~~~~~~~~~~~-----------~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (117)
T cd07958 1 WSDSGVEG-AYRFLNRVWRLVTELAEAL-----------AAPAAA---AELSEEDKELRRKLHKTIKKVTEDIERLRFNT 65 (117)
T ss_pred CCcchhHH-HHHHHHHHHHHHHHHHhhc-----------cccccc---cccchhhHHHHHHHHHHHHHHHHHHhCCcchH
Confidence 56677766 4789999999765432110 111000 12356799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 000999 764 VVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFTPFFTEALYQNM 829 (1193)
Q Consensus 764 a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~PfiaEei~~~L 829 (1193)
|++.+++|++. .|.|+....+ .+.++.++++.++++|+|||||+||+||+.|
T Consensus 66 a~~~i~~~~~~-~n~~~~~~~p-------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 66 AIAALMELVNA-LYKYKKKDAQ-------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HHHHHHHHHHH-HHHhhccccc-------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 99999999964 6777653211 5679999999999999999999999999875
No 76
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.13 E-value=4.7e-10 Score=109.18 Aligned_cols=116 Identities=20% Similarity=0.222 Sum_probs=90.7
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 000999 687 DGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKSSNVLDQWINSATQSLVHFVRQEMEGYRLYTVVP 766 (1193)
Q Consensus 687 ~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wils~l~~li~~v~~~~e~y~~~~a~~ 766 (1193)
+++.+ +.++++++||+++|+..+.. +..+.... ......|+|++++++.+++.++++|++|+|++|++
T Consensus 2 ~~v~~-~~~~~n~~~r~~~~~~~~~~--------~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~ 69 (117)
T cd07375 2 ERLKQ-ARAFLNRLYRLLSFFRKALG--------GTQPKWDN---ELLEEADRELLARLQEFIKRTTNALEALDPTTAVQ 69 (117)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHhcC--------CCCCCcCh---hhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555 36789999999988654422 11111100 12356799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHhcCCCc
Q 000999 767 YLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYNVLLTSCKVMAPFT 818 (1193)
Q Consensus 767 ~l~~fi~~lsnwYi~~~r~rl~~~~~~~~~~~a~~tL~~vL~~l~~LLaPf~ 818 (1193)
.+++|++.+ |+|++..++|.+.+ ++...++.++++++..++++|+|||
T Consensus 70 ~i~~~~~~~-n~y~~~~~pw~~~~---~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 70 ELFKFTNEL-NWYLDELKPALQTE---ELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHHHHHHhc-cHHHHHhhHHHcCc---hhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999766 99999999998764 2345677899999999999999997
No 77
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.01 E-value=6.3e-10 Score=113.40 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=64.7
Q ss_pred EcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHH
Q 000999 45 YDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSI 124 (1193)
Q Consensus 45 ~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~ 124 (1193)
+.+.|||||.||+||+++.++.|+++||.|++|++|.+..|+|.+|.++...+.+ .+..+ +++
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~-~~~~~----------------~~~ 64 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANK-KGENA----------------KAF 64 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHh-cCCCH----------------HHH
Confidence 5678999999999999999999999999999999999999999999999998875 45543 346
Q ss_pred HHHHHHHHHHHHH
Q 000999 125 VTRYVEEWEQIIT 137 (1193)
Q Consensus 125 ~~~~~~~~~~~~~ 137 (1193)
+..+.+.++++++
T Consensus 65 ~~~~~~~~~~~~~ 77 (143)
T cd00802 65 VERWIERIKEDVE 77 (143)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666665
No 78
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=3.6e-08 Score=115.33 Aligned_cols=96 Identities=24% Similarity=0.289 Sum_probs=75.1
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhh--------HHHHHHHHHHcCCCCcchhhh
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHG--------LPVENEIDKTLGIKRRDDVFQ 111 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hG--------lpie~~v~k~lg~~~~~~~~~ 111 (1193)
.+++| .+==.|+|.+|+|+++--+..|++.|-.|-+|+.|.+++=||.+- +|=....++.+|..-...---
T Consensus 19 ~~~~v-~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVV-ATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEE-ecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 34555 555688999999999999999999999999999999999999875 354466677788643221111
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 000999 112 MGIDKYNEACRSIVTRYVEEWEQIITRTGRW 142 (1193)
Q Consensus 112 ~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~ 142 (1193)
.| .|.++++.+...+.+.+.++|+-
T Consensus 98 ~G------~~~Sya~hf~~~f~~~l~~~Gi~ 122 (521)
T COG1384 98 FG------CCDSYAEHFLRPFEEFLDEFGIE 122 (521)
T ss_pred cc------ccchHHHHHHHHHHHHHHhcCCc
Confidence 33 47889999999999999999943
No 79
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.20 E-value=6.4e-06 Score=96.60 Aligned_cols=137 Identities=21% Similarity=0.187 Sum_probs=86.5
Q ss_pred CCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHH-------HcCC-CC----
Q 000999 38 CQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDK-------TLGI-KR---- 105 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k-------~lg~-~~---- 105 (1193)
..++.++=-.-|||||++|+||+++.+|.|+++|-.+-.||+|.+..=....|..+-..+.. .+.. .+
T Consensus 18 ~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l 97 (354)
T PF00750_consen 18 KGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHL 97 (354)
T ss_dssp TSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHH
T ss_pred CCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccch
Confidence 34556666688999999999999999999999999999999999999998888876532211 0000 00
Q ss_pred --------------------cchhhhcCHHHH--HH----HHHHHHHH-HHHHHHHHHHHhCCcccccCccccCChhHHH
Q 000999 106 --------------------RDDVFQMGIDKY--NE----ACRSIVTR-YVEEWEQIITRTGRWIDFRNDYKTMDLKFME 158 (1193)
Q Consensus 106 --------------------~~~~~~~g~~~f--~~----~c~~~~~~-~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~ 158 (1193)
.+.+.+...+.| .+ +.+++..+ ..+.+++++.++| +.+|..+.-.+-.|..
T Consensus 98 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~--i~fDv~~~E~Es~~~~ 175 (354)
T PF00750_consen 98 EDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLY--IRFDVWFDESESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT-----SEEEEHCHHHHTT
T ss_pred hhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHH--HHhCcCcccchhhhhh
Confidence 000000000000 00 02223333 5566778899999 5666666554445777
Q ss_pred HHHHHHHHHHHcCceeee
Q 000999 159 SVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 159 ~v~~~f~~L~~kGliy~~ 176 (1193)
.+..++.+|.++|++|+.
T Consensus 176 ~v~~vl~~L~e~g~~~~~ 193 (354)
T PF00750_consen 176 KVDEVLERLKEKGLLYES 193 (354)
T ss_dssp HHHHHHHHHHCTTTEEEE
T ss_pred HHHHHHHHHHhCCcEEec
Confidence 789999999999999974
No 80
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.85 E-value=2.6e-05 Score=89.65 Aligned_cols=89 Identities=20% Similarity=0.233 Sum_probs=45.6
Q ss_pred CCceeEEecccCcc--chHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhh
Q 000999 596 FPGQFIAEGLDQTR--GWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLIN 673 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r--~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~ 673 (1193)
+.+||=..|+|+.- |=+-+.--++-.++|..|+ .-+.-.|++++.|+|||||+||+++|.|+++-+.+++|||+++.
T Consensus 233 lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP-~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~ 311 (360)
T PF01921_consen 233 LGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPP-VPFPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMAR 311 (360)
T ss_dssp TT-SEEEEEHHHHCTTSHHHHHHHHHHHCC------EEEEE--EEES--------------HHHHHTTS-HHHHHHHHHC
T ss_pred cCceeccCCCccCCCCCChhhHHHHHHHHhCCCCC-CCCCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcc
Confidence 45778888999976 3233334456456666665 45677899998777999999999999999999999999999998
Q ss_pred CCcccccccccc
Q 000999 674 SPVVRAETLRFK 685 (1193)
Q Consensus 674 ~~~~~~~d~~Fs 685 (1193)
..|...-++.|+
T Consensus 312 ~~P~~~~~~~~~ 323 (360)
T PF01921_consen 312 TKPNKAKDFSFD 323 (360)
T ss_dssp S-TTS-EEE--S
T ss_pred cCCCcceEeccC
Confidence 666444444444
No 81
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.75 E-value=4.5e-05 Score=83.64 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=65.6
Q ss_pred CCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHH
Q 000999 47 GPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVT 126 (1193)
Q Consensus 47 gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~ 126 (1193)
=+|.|||.+|+||+++.++.++++| ++++.+..=+|..--+.. .|+ .
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~-------------------------~~~---~ 52 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK-------------------------RPD---P 52 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc-------------------------cch---H
Confidence 3799999999999999999999999 455555444444411110 011 2
Q ss_pred HHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceee
Q 000999 127 RYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYK 175 (1193)
Q Consensus 127 ~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~ 175 (1193)
.+.+.+.++++.|| ++||..|+.. ++.+.-..+..+|.++|++|.
T Consensus 53 ~~~~~i~~dL~wLG--l~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 53 EAYDMIPEDLEWLG--VKWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHHHHHHcC--CCCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 24455889999999 6998765543 455666677889999999997
No 82
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.65 E-value=0.00018 Score=88.04 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=84.9
Q ss_pred CCCchHHHHHHHHHHHhcCCccccc-ccC------CCC-CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCcc
Q 000999 9 DFSFSREEEKILEFWNSIDAFKTQL-DRT------RCQ-PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHV 80 (1193)
Q Consensus 9 ~~~~~~~E~~~~~~W~~~~~f~~~~-~~~------~~~-~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V 80 (1193)
.+++.+.++++.+.|-+.-.-+... +.. ++. +.-+.+==||.|||.||+|||++.++.+.++| ...|.-+
T Consensus 60 ~ms~ee~~~~l~~~~pe~~~~~~~~~~~~~~lp~L~~ae~g~V~tRFaPsPtG~LHIGharaalln~~~Ar--~~~G~~i 137 (567)
T PRK04156 60 SLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGKVVMRFAPNPSGPLHLGHARAAILNDEYAK--MYGGKFI 137 (567)
T ss_pred cCCHHHHHHHHHHhChhhhhhhhhhcccccCCCCCCCCCCCeEEEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEE
Confidence 5777788888888887540000000 000 111 11233446899999999999999999999999 3345544
Q ss_pred ceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHH
Q 000999 81 TRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESV 160 (1193)
Q Consensus 81 ~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v 160 (1193)
++.=-+|. -+ +. ....|.+.+.++++.|| ++||..|++. .|.+.-
T Consensus 138 LRidDTDp---k~------------~R----------------~~~e~~~~I~edL~wLG--l~wD~~~~qS--dr~~~y 182 (567)
T PRK04156 138 LRFEDTDP---RT------------KR----------------PDPEAYDMILEDLKWLG--VKWDEVVIQS--DRLEIY 182 (567)
T ss_pred EeEccCCC---Cc------------cc----------------chHHHHHHHHHHHHHcC--CCCCCccCcc--cCHHHH
Confidence 44432221 00 10 11235578899999999 6998776654 566777
Q ss_pred HHHHHHHHHcCceeee
Q 000999 161 WWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 161 ~~~f~~L~~kGliy~~ 176 (1193)
.....+|.++|+.|..
T Consensus 183 ~~~a~~Li~~G~AY~C 198 (567)
T PRK04156 183 YEYARKLIEMGGAYVC 198 (567)
T ss_pred HHHHHHHHHcCCCccC
Confidence 7888999999999853
No 83
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.39 E-value=0.00032 Score=85.71 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=71.7
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+++==||.|||.||+|||++.++.+.++| ...|.-+++.==+|. +.
T Consensus 94 vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G~~iLRidDTDp-----------------~R--------------- 139 (560)
T TIGR00463 94 VVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKGKLIIRFDDTDP-----------------RR--------------- 139 (560)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCCEEEEEeCcCCc-----------------cc---------------
Confidence 56677999999999999999999999997 335555555433332 11
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
-...|.+.+.++++.|| ++|+..+++ ..|.+.......+|.++|+.|..
T Consensus 140 -~~~e~~~~I~edL~wLG--i~~d~~~~q--Sd~~~~y~~~a~~Li~~G~AY~C 188 (560)
T TIGR00463 140 -VKPEAYDMILEDLDWLG--VKGDEVVYQ--SDRIEEYYDYCRKLIEMGKAYVC 188 (560)
T ss_pred -ccHHHHHHHHHHHHHcC--CCCCccccc--cccHHHHHHHHHHHHHcCCceee
Confidence 01237788999999999 779876555 46777788888999999999974
No 84
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.23 E-value=0.00064 Score=82.28 Aligned_cols=95 Identities=21% Similarity=0.211 Sum_probs=73.1
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+.+==||.|||.||+|||++-++...++|- ..|.-+++.==+|- ..
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLRiEDTDp-----------------~R--------------- 57 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILRFDDTNP-----------------SK--------------- 57 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCCC-----------------Cc---------------
Confidence 556679999999999999999999999974 35766666433332 11
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
....|.+.+.+.++-|| ++||..|.+. .|.+.-.....+|.++|++|..
T Consensus 58 -~~~e~~~~I~~dL~WLG--l~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 58 -EKAEFEESIIEDLGKIE--IKPDSVSFTS--DYFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred -cchHHHHHHHHHHHHhC--CCCCCCcccc--ccHHHHHHHHHHHHHcCCeEec
Confidence 11347788999999999 8899877664 5667777888999999999975
No 85
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=97.21 E-value=0.00022 Score=83.78 Aligned_cols=63 Identities=29% Similarity=0.341 Sum_probs=44.8
Q ss_pred ceeEEecccCccchHHHHHHHHHHccCCCCc--cE-EEEEeeEEccCCc-cccccCCCCCChhhhHhhc
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLSTALFGKPAF--RN-LICNGLVLAEDGK-KMSKKLKNYPSPVEVINDY 662 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pf--k~-v~~hG~vld~~G~-KMSKS~GN~v~P~~li~~y 662 (1193)
.-+++.|.||. +||..+..+.-.+. ..|. +- .+..|+++.++|+ ||||++||+|..+++|++.
T Consensus 240 ~~iyV~~~~q~-~hf~~l~~~l~~lg-~~~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~ 306 (354)
T PF00750_consen 240 KIIYVVGADQK-GHFKQLFAILEALG-YDPEAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEA 306 (354)
T ss_dssp EEEEEEEGGGH-HHHHHHHHHHHHTT--HHHHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHH
T ss_pred cEEEEecCchh-hHHHHHHHHHHHhC-CCCCCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHH
Confidence 34889999998 57777765554443 2121 22 2567999999998 9999999999999999943
No 86
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.20 E-value=0.0012 Score=72.42 Aligned_cols=90 Identities=20% Similarity=0.163 Sum_probs=66.6
Q ss_pred CCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHH
Q 000999 47 GPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVT 126 (1193)
Q Consensus 47 gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~ 126 (1193)
=+|.|||.||+||+++.++.-.++|- ..|.-+++.==+| +.. ...
T Consensus 6 FAPsPtG~lHlG~~~~al~~~l~Ar~--~~G~~iLRieDtD-----------------~~R----------------~~~ 50 (238)
T cd00807 6 FPPEPNGYLHIGHAKAILLNFGYAKK--YGGRCNLRFDDTN-----------------PEK----------------EEE 50 (238)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEecCCC-----------------Ccc----------------cch
Confidence 37999999999999999999988865 3565555432221 111 123
Q ss_pred HHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceee
Q 000999 127 RYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYK 175 (1193)
Q Consensus 127 ~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~ 175 (1193)
.+.+.+.++++.|| ++||..|+.. ++.+.-..+..+|.++|++|.
T Consensus 51 ~~~~~I~~dL~wlG--l~wD~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 51 EYVDSIKEDVKWLG--IKPYKVTYAS--DYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred HHHHHHHHHHHHcC--CCCCCceecc--cCHHHHHHHHHHHHHcCCeec
Confidence 47788999999999 8999665543 455666778889999999999
No 87
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.18 E-value=0.0008 Score=75.59 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=68.9
Q ss_pred CCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHH
Q 000999 48 PPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTR 127 (1193)
Q Consensus 48 PP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~ 127 (1193)
+|.|||.||+||+++.++.-.++| +..|.-+++.==+|. .. ....
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~-----------------~R----------------~~~~ 50 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDP-----------------PR----------------EVPG 50 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC-----------------CC----------------CChH
Confidence 699999999999999999999998 457777777644443 00 1123
Q ss_pred HHHHHHHHHHHhCCcccccCc-cccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 128 YVEEWEQIITRTGRWIDFRND-YKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 128 ~~~~~~~~~~~lG~~iD~~~~-y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
+.+.+.++++.|| ++||.. |+.. .+.+.-..+..+|.++|++|.-
T Consensus 51 ~~~~I~~dL~wLG--l~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 51 AADDILRTLEAYG--LHWDGEVVYQS--QRHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred HHHHHHHHHHHcC--CCCCCCeeeee--CCHHHHHHHHHHHHHcCCEEec
Confidence 6678999999999 899953 4443 4556667788899999999975
No 88
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.13 E-value=0.0011 Score=79.37 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=68.3
Q ss_pred CCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHH
Q 000999 47 GPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVT 126 (1193)
Q Consensus 47 gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~ 126 (1193)
=+|-|||.||+||+++.+..-.++|- ..|.-+++.==+|. ++ ...
T Consensus 7 FAPSPTG~lHiG~artAL~n~l~Ar~--~gG~fiLRIEDTD~-----~R----------------------------s~~ 51 (445)
T PRK12558 7 FAPSPTGYLHVGNARTALLNWLYARK--HGGKFILRIDDTDL-----ER----------------------------SKQ 51 (445)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEeccCCc-----cc----------------------------chH
Confidence 37999999999999999988777764 35666666554441 11 123
Q ss_pred HHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 127 RYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 127 ~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
.+.+.+.++|+.|| ++||..|.-. +..+....+..+|.++|++|+-
T Consensus 52 ~~~~~I~e~L~wLG--I~~De~y~QS--er~~~y~~~~e~L~e~G~AY~C 97 (445)
T PRK12558 52 EYADAIAEDLKWLG--INWDRTFRQS--DRFDRYDEAAEKLKAAGRLYPC 97 (445)
T ss_pred HHHHHHHHHHHHcC--CCCCccccHH--HHHHHHHHHHHHHHHCCCEEEe
Confidence 46778999999999 8898765443 3346788999999999999876
No 89
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.12 E-value=0.0013 Score=79.81 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=70.6
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+.+==||.|||.||+|||++.++...++|. ..|.-+++.==+| +..
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~--~gG~~iLRiEDTD-----------------p~r--------------- 97 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARA--HGGKCYLRYDDTN-----------------PET--------------- 97 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCC-----------------ccc---------------
Confidence 445569999999999999999999999985 3566665543333 111
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
....|.+.+.++++.|| ++||..+.+ ..|.+.......+|.++|++|..
T Consensus 98 -~~~e~~~~I~~dL~wLG--i~~D~~~~q--S~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 98 -EEQVYIDAIMEMVKWMG--WKPDWVTFS--SDYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred -cChHHHHHHHHHHHHcC--CCCCCCCcC--chhHHHHHHHHHHHHHcCCEEEc
Confidence 11247788999999999 889877644 45666666777899999999974
No 90
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.10 E-value=0.0013 Score=80.49 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=70.1
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+.+==||.|||.||+|||.+-++...++|-+ .|.-++|.==+ .+..
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLRiEDT-----------------Dp~R--------------- 98 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFRFDDT-----------------NPSK--------------- 98 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEcCC-----------------CCcc---------------
Confidence 5666799999999999999999999999843 56555543211 1111
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccC-ccccCChhHHHHHHHHHHHHHHcCcee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFRN-DYKTMDLKFMESVWWVFAQLYEKGLVY 174 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~~-~y~T~d~~y~~~v~~~f~~L~~kGliy 174 (1193)
....|.+.+.++++-|| ++||. .|++. .|.+.-.....+|.++|+.|
T Consensus 99 -~~~e~~d~IleDL~WLG--l~wDe~~~~QS--dr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 99 -EKEHFEQAILDDLATLG--VSWDVGPTYSS--DYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred -cCHHHHHHHHHHHHHCC--CCCCCceeecc--ccHHHHHHHHHHHHHcCCEE
Confidence 12347889999999999 89986 55554 56677778889999999998
No 91
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.08 E-value=0.0011 Score=76.52 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=61.7
Q ss_pred CCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHH
Q 000999 48 PPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTR 127 (1193)
Q Consensus 48 PP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~ 127 (1193)
+|.|||.||+||+++.++.-.++| +..|.-+++.==+|. .. | ...
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~-----------------~R-------------~---~~~ 51 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP-----------------ER-------------C---RPE 51 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST-----------------TT-------------C---HHH
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc-----------------cc-------------c---hhh
Confidence 799999999999999999999888 566777766533332 11 1 124
Q ss_pred HHHHHHHHHHHhCCccccc-CccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 128 YVEEWEQIITRTGRWIDFR-NDYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 128 ~~~~~~~~~~~lG~~iD~~-~~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
|.+.+.+.|+.|| ++|| .+|... .+.+.-..+..+|.++|++|.-
T Consensus 52 ~~~~i~~~L~wlG--l~~D~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 52 FYDAILEDLRWLG--LEWDYGPYYQS--DRLEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp HHHHHHHHHHHHT-----STCEEEGG--GGHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhheeEEE--EecCCeEEeHH--HHHHHHHHHHHHHhhcCCCccc
Confidence 6778999999999 8997 666654 4555666777899999999875
No 92
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=96.97 E-value=0.0018 Score=78.29 Aligned_cols=92 Identities=18% Similarity=0.101 Sum_probs=69.7
Q ss_pred cCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHH
Q 000999 46 DGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIV 125 (1193)
Q Consensus 46 ~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~ 125 (1193)
==+|-|||.||+||+++.++.-.++| +..|.-+++.==+|. ++ ..
T Consensus 8 RFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~-----~R----------------------------~~ 52 (513)
T PRK14895 8 RFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDK-----ER----------------------------ST 52 (513)
T ss_pred eeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc-----cc----------------------------cC
Confidence 34799999999999999999999998 557777777644432 00 12
Q ss_pred HHHHHHHHHHHHHhCCccccc-CccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 126 TRYVEEWEQIITRTGRWIDFR-NDYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 126 ~~~~~~~~~~~~~lG~~iD~~-~~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
..+.+.+.+.|+.|| +||| .+|+..+ ..+.-.....+|.++|++|.-
T Consensus 53 ~~~~~~i~~~L~WLG--l~wDe~py~QSe--R~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 53 KEAVEAIFSGLKWLG--LDWNGEVIFQSK--RNNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred hHHHHHHHHHHHHcC--CCCCCCceeEeC--cHHHHHHHHHHHHHcCCeEEe
Confidence 347788899999999 8998 5666554 345556778899999999975
No 93
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=96.95 E-value=0.0017 Score=73.94 Aligned_cols=93 Identities=17% Similarity=0.121 Sum_probs=67.1
Q ss_pred EcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHH
Q 000999 45 YDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSI 124 (1193)
Q Consensus 45 ~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~ 124 (1193)
.==+|.|||.||+||+++.++.-.++|-+ .|.-+++.==+|. .. .
T Consensus 8 ~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiEDtD~-----------------~R----------------~ 52 (299)
T PRK05710 8 GRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIEDIDP-----------------PR----------------E 52 (299)
T ss_pred EEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEECcCCC-----------------Cc----------------c
Confidence 34479999999999999999998887653 4655555432221 11 1
Q ss_pred HHHHHHHHHHHHHHhCCcccccC-ccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 125 VTRYVEEWEQIITRTGRWIDFRN-DYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 125 ~~~~~~~~~~~~~~lG~~iD~~~-~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
...|.+.+.++++.|| ++||. +|+..+ +.+.-..+..+|.++|++|.-
T Consensus 53 ~~~~~~~I~~dL~wlG--l~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~C 101 (299)
T PRK05710 53 VPGAADAILADLEWLG--LHWDGPVLYQSQ--RHDAYRAALDRLRAQGLVYPC 101 (299)
T ss_pred chHHHHHHHHHHHHCC--CCCCCCceEeec--cHHHHHHHHHHHHHCCCceec
Confidence 2347788999999999 89994 665543 455667778899999999864
No 94
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=96.95 E-value=0.0019 Score=78.41 Aligned_cols=91 Identities=21% Similarity=0.255 Sum_probs=65.5
Q ss_pred CCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHH
Q 000999 47 GPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVT 126 (1193)
Q Consensus 47 gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~ 126 (1193)
=||.|||.||+|||++.++-..++|- ..|.-+++.==+|- .. ...
T Consensus 5 FaPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLRieDTd~-----------------~r----------------~~~ 49 (522)
T TIGR00440 5 FPPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLRFDDTNP-----------------VK----------------EDP 49 (522)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEEcCCCc-----------------cc----------------CCh
Confidence 38999999999999999999999973 45666665433332 10 112
Q ss_pred HHHHHHHHHHHHhCCccccc-CccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 127 RYVEEWEQIITRTGRWIDFR-NDYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 127 ~~~~~~~~~~~~lG~~iD~~-~~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
.|.+.+.+.++-|| ++|| ..|.+.+ |.+.-.....+|.++|+.|..
T Consensus 50 e~~~~I~~dL~wLG--~~~d~~~~~qS~--~~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 50 EYVESIKRDVEWLG--FKWEGKIRYSSD--YFDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred HHHHHHHHHHHHcC--CCCCCCceEccc--cHHHHHHHHHHHHHcCCEEee
Confidence 47788999999999 8994 4455543 334444555899999999975
No 95
>PLN02907 glutamate-tRNA ligase
Probab=96.91 E-value=0.0025 Score=80.91 Aligned_cols=94 Identities=21% Similarity=0.249 Sum_probs=72.5
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+.+==||.|||.||+|||++-++-..++| ...|.-++|.==+|- ..
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~eDTdp-----------------~r--------------- 259 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRFDDTNP-----------------SK--------------- 259 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCC-----------------Cc---------------
Confidence 56677999999999999999999999998 446766665433332 11
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYK 175 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~ 175 (1193)
...+|.+.+.++++-|| ++||..|++. .|.+.-.....+|.++|+.|.
T Consensus 260 -~~~e~~~~I~~dl~wLG--~~~d~~~~qS--~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 260 -ESDEFVENILKDIETLG--IKYDAVTYTS--DYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred -CChHHHHHHHHHHHHcC--CCCCCccccc--ccHHHHHHHHHHHHHcCCeee
Confidence 11247788999999999 8999887665 456666788899999999996
No 96
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=96.89 E-value=0.002 Score=76.75 Aligned_cols=90 Identities=18% Similarity=0.118 Sum_probs=67.9
Q ss_pred CCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHH
Q 000999 48 PPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTR 127 (1193)
Q Consensus 48 PP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~ 127 (1193)
+|.|||.||+||+++.++.-.++|- ..|.-+++.==+|. ++ ....
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLRiEDTD~-----~R----------------------------~~~e 49 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIRIEDTDK-----ER----------------------------NIEG 49 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC-----Cc----------------------------CChH
Confidence 6999999999999999999888864 45777776544443 11 1123
Q ss_pred HHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 128 YVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 128 ~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
+.+.+.+.|+.|| ++||..|+..+ +.+.-..+..+|.++|.+|.-
T Consensus 50 ~~~~I~~~L~WlG--l~wDe~y~QSe--R~~~Y~~~a~~Li~~G~AY~C 94 (433)
T PRK12410 50 KDKEILEILNLFG--ISWDKLVYQSE--NLKFHRQMAEKLLSEKKAFAC 94 (433)
T ss_pred HHHHHHHHHHHcC--CCCCCCeehhc--cHHHHHHHHHHHHHcCCeeee
Confidence 6788899999999 89998887664 234445678899999999975
No 97
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0021 Score=77.40 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=71.8
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+.+==+|.|||.||+|||++-++--.++|. ..|.-+++.==+|- +.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~--~~G~fiLRiEDTD~-----------------~R--------------- 55 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARK--YGGKFILRIEDTDP-----------------ER--------------- 55 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHH--hCCEEEEEecCCCC-----------------CC---------------
Confidence 556668999999999999999999998875 45777777544442 11
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccC-ccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFRN-DYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~~-~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
....|.+.+.+.|+-|| ++||. .|... ++.+.-.....+|.++|+.|..
T Consensus 56 -~~~e~~~~I~~~L~WLG--l~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 56 -ETPEAEDAILEDLEWLG--LDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred -CCHHHHHHHHHHHHhcC--CCCCCceeehh--hhHHHHHHHHHHHHHCCCeEEe
Confidence 11236788999999999 99999 46654 4555556677889999999976
No 98
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=96.84 E-value=0.0023 Score=77.85 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=66.3
Q ss_pred CCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHH
Q 000999 48 PPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTR 127 (1193)
Q Consensus 48 PP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~ 127 (1193)
+|-|||.||+||+++.++.-.++| ...|.-+++.==+|. ++ ....
T Consensus 7 APsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLRieDtD~-----~R----------------------------~~~~ 51 (470)
T TIGR00464 7 APSPTGYLHIGGARTALFNYLFAK--HTGGEFILRIEDTDL-----ER----------------------------NIEE 51 (470)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC-----cc----------------------------CChH
Confidence 799999999999999999999888 345666665433332 00 1224
Q ss_pred HHHHHHHHHHHhCCccccc-CccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 128 YVEEWEQIITRTGRWIDFR-NDYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 128 ~~~~~~~~~~~lG~~iD~~-~~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
+.+.+.+.++.|| ++|| .+|+..+ +.+.-..+..+|.++|++|.-
T Consensus 52 ~~~~i~~~L~wlG--l~~de~~~~QS~--r~~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 52 AEEAILEGLKWLG--ISWDEGPYYQSQ--RLDIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred HHHHHHHHHHHCC--CCCCCCeeehhC--CHHHHHHHHHHHHHcCCEEec
Confidence 7788999999999 8999 6676654 233345667889999999975
No 99
>PLN02859 glutamine-tRNA ligase
Probab=96.70 E-value=0.0048 Score=77.56 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=68.0
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+.+==||-|||.||+|||++-++--.++|.+ .|.-.+|.==+| +..
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRieDTd-----------------p~r--------------- 310 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRFDDTN-----------------PEA--------------- 310 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCC-----------------CCc---------------
Confidence 4556689999999999999999999999874 566655543333 111
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
....|.+.+.++++-|| ++|+..|.+.| |.+.....-.+|.++|+.|..
T Consensus 311 -~~~e~~~~I~edL~WLG--~~~d~~~~qSd--~f~~~Y~~A~~Li~~G~AY~C 359 (788)
T PLN02859 311 -EKKEYIDHIEEIVEWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYVD 359 (788)
T ss_pred -cchHHHHHHHHHHHHcC--CCCCCcccccH--hHHHHHHHHHHHHHcCCeEec
Confidence 12347788999999999 78988776654 332222345669999999974
No 100
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.65 E-value=0.0039 Score=68.80 Aligned_cols=86 Identities=22% Similarity=0.230 Sum_probs=60.9
Q ss_pred CCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHH
Q 000999 47 GPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVT 126 (1193)
Q Consensus 47 gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~ 126 (1193)
=+|.|||.||+||+++.++.-.++|= ..|.-+++.==+|. .. | ..
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilRieDtd~-----------------~r-------------~---~~ 50 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFARK--HGGKFILRIEDTDQ-----------------ER-------------S---VP 50 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEECcCCC-----------------CC-------------C---ch
Confidence 37999999999999999999888873 45544444433331 11 1 12
Q ss_pred HHHHHHHHHHHHhCCcccccC---------ccccCChhHHHHHHHHHHHHHHcC
Q 000999 127 RYVEEWEQIITRTGRWIDFRN---------DYKTMDLKFMESVWWVFAQLYEKG 171 (1193)
Q Consensus 127 ~~~~~~~~~~~~lG~~iD~~~---------~y~T~d~~y~~~v~~~f~~L~~kG 171 (1193)
.+.+.+.+++..|| ++||. .|...+ ..+.-..+..+|.++|
T Consensus 51 ~~~~~i~~dL~wlG--l~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 51 EAEEAILEALKWLG--LDWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred HHHHHHHHHHHHcC--CCCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 36678889999999 89998 666554 4555556678888888
No 101
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=96.57 E-value=0.0045 Score=67.80 Aligned_cols=86 Identities=22% Similarity=0.217 Sum_probs=63.5
Q ss_pred CCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHH
Q 000999 47 GPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVT 126 (1193)
Q Consensus 47 gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~ 126 (1193)
=+|.|||.||+||+++.++.-.++|-+ .|.-+++.==+|. .. ...
T Consensus 6 FAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieDtD~-----------------~R----------------~~~ 50 (230)
T cd00418 6 FAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIEDTDP-----------------ER----------------SRP 50 (230)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCcCCC-----------------CC----------------CCh
Confidence 379999999999999999999988754 6766666543332 10 112
Q ss_pred HHHHHHHHHHHHhCCcccccC-ccccCChhHHHHHHHHHHHHHHcC
Q 000999 127 RYVEEWEQIITRTGRWIDFRN-DYKTMDLKFMESVWWVFAQLYEKG 171 (1193)
Q Consensus 127 ~~~~~~~~~~~~lG~~iD~~~-~y~T~d~~y~~~v~~~f~~L~~kG 171 (1193)
.|.+.+.++++.|| ++||. +|+.. .+.+.-.....+|.++|
T Consensus 51 ~~~~~I~~dL~wlG--l~wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 51 EYVESILEDLKWLG--LDWDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred HHHHHHHHHHHHcC--CCCCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 47788999999999 89997 66544 34455566778899999
No 102
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=96.51 E-value=0.0054 Score=77.86 Aligned_cols=95 Identities=24% Similarity=0.270 Sum_probs=69.4
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+.+==||.|||.||+|||++.++...++|- ..|.-+++.==+| +..
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~--~~G~~~LR~eDTd-----------------~~r--------------- 77 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARD--YGGRCHLRMDDTN-----------------PET--------------- 77 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEeCCCC-----------------CCc---------------
Confidence 666779999999999999999999998874 3455554432211 111
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccCc-cccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFRND-YKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~~~-y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
....|.+.+.++++-|| ++|+.. |++. .|.+.-.....+|.++|+.|..
T Consensus 78 -~~~e~~~~I~~dl~wLG--~~wd~~~~~qS--~~~~~y~~~a~~Li~~G~aY~c 127 (771)
T PRK14703 78 -EDTEYVEAIKDDVRWLG--FDWGEHLYYAS--DYFERMYAYAEQLIKMGLAYVD 127 (771)
T ss_pred -CChHHHHHHHHHHHHcC--CCCCCCceEee--cCHHHHHHHHHHHHHcCCcccC
Confidence 11247788999999999 899853 5554 5666667778899999999975
No 103
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=96.48 E-value=0.0074 Score=73.50 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=83.4
Q ss_pred EcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHH
Q 000999 45 YDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSI 124 (1193)
Q Consensus 45 ~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~ 124 (1193)
+==+|-|||.||+||+++-++.-.++|- ..|.-+++.==+|. .. .
T Consensus 7 ~RfAPSPtG~lHiG~~rtal~n~l~Ar~--~~G~fiLRieDtD~-----------------~R----------------~ 51 (476)
T PRK01406 7 TRFAPSPTGYLHIGGARTALFNWLFARH--HGGKFILRIEDTDQ-----------------ER----------------S 51 (476)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC-----------------CC----------------C
Confidence 3447999999999999999999888875 35666666543332 00 2
Q ss_pred HHHHHHHHHHHHHHhCCcccccCc--------cccCChhHHHHHHHHHHHHHHcCceeeec-----------------ee
Q 000999 125 VTRYVEEWEQIITRTGRWIDFRND--------YKTMDLKFMESVWWVFAQLYEKGLVYKGF-----------------KV 179 (1193)
Q Consensus 125 ~~~~~~~~~~~~~~lG~~iD~~~~--------y~T~d~~y~~~v~~~f~~L~~kGliy~~~-----------------~~ 179 (1193)
+..+.+.+.+.|+.|| ++||.. |+..+ +.+.-.....+|.++|+.|.-. .+
T Consensus 52 ~~~~~~~i~~~L~wlG--l~~De~p~~~~~gpy~QS~--r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~ 127 (476)
T PRK01406 52 TEEAEEAILEGLKWLG--LDWDEGPDGGPYGPYRQSE--RLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEP 127 (476)
T ss_pred ChHHHHHHHHHHHHCC--CCCCCCCccCCCCceehhc--CHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCC
Confidence 2347788999999999 899954 55543 3355567778999999999631 12
Q ss_pred ccccCCCCCccCcccccccccccCCCeEEEEeeec
Q 000999 180 MPYSTGCKTPLSNFEAGQNYKDVPDPEIMVSFPIV 214 (1193)
Q Consensus 180 v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~ 214 (1193)
..|.-.|. -++..|+.... ..+....++|++.
T Consensus 128 ~~y~~~cr-~~~~~~~~~~~--~~g~~~~iR~k~p 159 (476)
T PRK01406 128 PRYDGRCR-DLTKEEVAARL--AAGEPPVIRFKVP 159 (476)
T ss_pred CCCCcccc-CCCHHHHHHHH--hCCCCeeEEEEcC
Confidence 33555665 35555543211 1233456777663
No 104
>PLN02627 glutamyl-tRNA synthetase
Probab=96.46 E-value=0.0062 Score=74.00 Aligned_cols=95 Identities=22% Similarity=0.150 Sum_probs=69.7
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+.+==+|-|||.||+||+++-++.-.++| +..|.-+++.==+|. ++
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~-----~R--------------------------- 91 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDL-----AR--------------------------- 91 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC-----CC---------------------------
Confidence 34444689999999999999999999998 566777777544443 00
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccCc---------cccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFRND---------YKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~~~---------y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
....+.+.+.+.|+.|| ++||.. |+-. +..+.-..+..+|.++|++|.-
T Consensus 92 -~~~e~~~~I~~~L~WLG--l~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~C 149 (535)
T PLN02627 92 -STKESEEAVLRDLKWLG--LDWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYPC 149 (535)
T ss_pred -CChHHHHHHHHHHHHcC--CCCCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeeec
Confidence 12347788999999999 899953 4433 2344556677899999999975
No 105
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=96.42 E-value=0.0084 Score=73.06 Aligned_cols=95 Identities=19% Similarity=0.198 Sum_probs=66.4
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+.+==||.|||.||+|||++-++-..++|. ..|.-+++.==+| +..
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLRieDTd-----------------~~r--------------- 75 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLRFDDTN-----------------PEK--------------- 75 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEECCCC-----------------CCc---------------
Confidence 556679999999999999999999999984 3565555532222 111
Q ss_pred HHHHHHHHHHHHHHHHhCCcccc-cCccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDF-RNDYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~-~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
....|.+.+.+.++-|| ++| +..|.+.+ |.+.-...-.+|.++|++|..
T Consensus 76 -~~~e~~~~I~~dL~wLG--i~~d~~~~~qS~--r~~~~y~~a~~Li~~G~AY~c 125 (554)
T PRK05347 76 -EDQEYVDSIKEDVRWLG--FDWSGELRYASD--YFDQLYEYAVELIKKGKAYVD 125 (554)
T ss_pred -CChHHHHHHHHHHHHcC--CCCCCCceeeec--CHHHHHHHHHHHHHcCCEeeC
Confidence 11247788999999999 889 55566543 333333344699999999974
No 106
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=96.12 E-value=0.00078 Score=77.69 Aligned_cols=143 Identities=20% Similarity=0.288 Sum_probs=79.2
Q ss_pred CCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchh--------hHHHHHHHHHHcCCCCcchhh
Q 000999 39 QPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCH--------GLPVENEIDKTLGIKRRDDVF 110 (1193)
Q Consensus 39 ~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~h--------Glpie~~v~k~lg~~~~~~~~ 110 (1193)
+..++|-.| =.|+|.+|||+++--+..|++.|=.|.+|++|.+++.||.. ++|=+ ..++.+|..-. .|-
T Consensus 22 ~~~~v~~sG-~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~-~~~~ylg~Plt-~VP 98 (360)
T PF01921_consen 22 KEPYVFASG-ISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP-ELEKYLGKPLT-RVP 98 (360)
T ss_dssp -SEEEEEEE-E--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC--CCCCTTSBTT-TSB
T ss_pred CccEEEecC-CCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH-HHHHhcCCccc-cCC
Confidence 455666555 47899999999999999999999999999999999999986 34444 34444443211 110
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccC-ChhHHHHHH----------HHHHHHHHcCceeeece-
Q 000999 111 QMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTM-DLKFMESVW----------WVFAQLYEKGLVYKGFK- 178 (1193)
Q Consensus 111 ~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~-d~~y~~~v~----------~~f~~L~~kGliy~~~~- 178 (1193)
+-|- .|.+|++.|...+.+.|..+|+-+.+-...... +-.|.+.+. .++.+...+. .-....
T Consensus 99 ----dP~G-~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~-~~~~y~P 172 (360)
T PF01921_consen 99 ----DPFG-CHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE-RPETYSP 172 (360)
T ss_dssp -----TTS-SSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT---TT--S
T ss_pred ----CCCC-CCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC-CCCCeee
Confidence 1121 266799999999999999999544432221111 123444433 3333332222 111122
Q ss_pred eccccCCCCCcc
Q 000999 179 VMPYSTGCKTPL 190 (1193)
Q Consensus 179 ~v~wcp~~~T~L 190 (1193)
..|+|+.|++.+
T Consensus 173 f~piC~~cGri~ 184 (360)
T PF01921_consen 173 FLPICEKCGRID 184 (360)
T ss_dssp EEEEETTTEE--
T ss_pred eeeeccccCCcc
Confidence 267889998744
No 107
>PLN02563 aminoacyl-tRNA ligase
Probab=95.60 E-value=0.016 Score=75.96 Aligned_cols=79 Identities=18% Similarity=0.399 Sum_probs=65.1
Q ss_pred hhhhHHHHHHHHHCCCeeeeccccc--------------cCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccc
Q 000999 413 KDADKDIIEALKAKGRLVKTGSLTH--------------SYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWV 478 (1193)
Q Consensus 413 ~ea~~~Ii~~L~~~g~l~~~~~~~h--------------~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~ 478 (1193)
.+.-..+...|-++|++.+.+...+ .++.|||||.+++.+...|||+++++++++|++.++...|
T Consensus 211 ~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~w- 289 (963)
T PLN02563 211 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDW- 289 (963)
T ss_pred HHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCC-
Confidence 3567788999999999988654432 2467999999999999999999999999999999998887
Q ss_pred cchhhhHhHHhhhhc
Q 000999 479 PDYVKEKRFHNWLEN 493 (1193)
Q Consensus 479 P~~~~~~r~~~wl~~ 493 (1193)
|+.++ ..-.|||-.
T Consensus 290 p~~v~-~~q~nwiG~ 303 (963)
T PLN02563 290 PESIK-EMQRNWIGR 303 (963)
T ss_pred CHHHH-HHHHHhccc
Confidence 88776 455788753
No 108
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=95.27 E-value=0.023 Score=74.15 Aligned_cols=80 Identities=24% Similarity=0.396 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHCCCeeeecccc---------------ccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCCccc
Q 000999 414 DADKDIIEALKAKGRLVKTGSLT---------------HSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQTYWV 478 (1193)
Q Consensus 414 ea~~~Ii~~L~~~g~l~~~~~~~---------------h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~~~~ 478 (1193)
++-..+...|-++|++....... +..++|||||.+++.+..+|||+++++++++|++.+++....
T Consensus 130 ~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~w 209 (842)
T TIGR00396 130 KWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHW 209 (842)
T ss_pred HHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccc
Confidence 56677778888999877643321 122789999999999999999999999999999999988767
Q ss_pred cchhhhHhHHhhhhcC
Q 000999 479 PDYVKEKRFHNWLENA 494 (1193)
Q Consensus 479 P~~~~~~r~~~wl~~l 494 (1193)
|+.++ ....|||-.-
T Consensus 210 p~~v~-~~q~~wig~s 224 (842)
T TIGR00396 210 PESVK-EMQRNWIGKS 224 (842)
T ss_pred cHHHH-HHHHhccccc
Confidence 99876 5678898643
No 109
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=95.23 E-value=0.48 Score=49.06 Aligned_cols=146 Identities=11% Similarity=0.092 Sum_probs=84.5
Q ss_pred hhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhhhhhcC-CchhH
Q 000999 660 NDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLATLQKS-SNVLD 738 (1193)
Q Consensus 660 ~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~D 738 (1193)
++.|.|++||++++..+ ..++.|+++.+...-.+..--+-.++. |+..+-+.......+..... ... ..+.+
T Consensus 1 ~~i~~~a~~~~~l~~~~--~~~~~fd~~~~~~~~~~~~~yi~ya~a----Ri~nIl~k~~~~~~~~~~~~-~~ll~~~~E 73 (156)
T cd07956 1 EEVGVGAVKYQDLSNKR--IKDYTFDWERMLSFEGDTGPYLQYAHA----RLCSILRKAGETIEAEADAD-LSLLPEPDE 73 (156)
T ss_pred CccchhHHHHHHHhcCC--CCCceecHHHHHhhcCCCchhHHHHHH----HHHHHHHhCCCcCccccccc-hhhcCCHHH
Confidence 35689999999998765 568999998754432221111112222 22222111111000000000 011 13455
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCC--hHHHHHHHHHHHHHHHHHHHhcC
Q 000999 739 QWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSG--EDDCRIALSTLYNVLLTSCKVMA 815 (1193)
Q Consensus 739 ~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~--~~~~~~a~~tL~~vL~~l~~LLa 815 (1193)
+-++..+..+.+.+..++.+.+++.+++.+.++...+.++|=+ + ++.+++. ...|..-+..+..++...+.+|.
T Consensus 74 ~~L~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~-v--~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llg 149 (156)
T cd07956 74 RDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNA-C--PVLGAEEELRNARLALVAAARQVLANGLDLLG 149 (156)
T ss_pred HHHHHHHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhc-C--cccCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6678888888888899999999999999999999888888732 1 3333221 12334445556667777777764
No 110
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=94.98 E-value=0.019 Score=68.68 Aligned_cols=58 Identities=22% Similarity=0.057 Sum_probs=40.4
Q ss_pred cCCceeEEecccCccchHHHHHHH--HHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhh
Q 000999 595 NFPGQFIAEGLDQTRGWFYTLMVL--STALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVE 657 (1193)
Q Consensus 595 ~~Pad~~~~G~D~~r~Wf~~l~~~--~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~ 657 (1193)
.+.+++...|.||.. ..++.. .-.+....| ..+.+.++...+|.|||||.||+|+..+
T Consensus 184 ~~~~~iq~gG~DQ~~---ni~~grdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d 243 (410)
T PRK13354 184 KEDVDLQIGGTDQWG---NILMGRDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDP 243 (410)
T ss_pred cCCCCEEEecHHHHH---HHHHHHHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccC
Confidence 358999999999964 333322 222333444 4556777888999999999999988654
No 111
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.41 E-value=0.062 Score=60.92 Aligned_cols=54 Identities=20% Similarity=0.029 Sum_probs=36.0
Q ss_pred CCceeEEecccCccchHHHHHHHHH--HccC-CCCccEEEEEeeEEccCCccccccCCCCCC
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLST--ALFG-KPAFRNLICNGLVLAEDGKKMSKKLKNYPS 654 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~~--~l~~-~~pfk~v~~hG~vld~~G~KMSKS~GN~v~ 654 (1193)
+..++...|.||-. +..++..+ .+.+ ..| ..+++.++...+|.|||||.||.++
T Consensus 152 ~~~~~vp~G~DQ~~---~i~l~rdla~r~n~~~~p--~~l~~p~l~~l~G~KMSKS~~~~i~ 208 (273)
T cd00395 152 EGCDIQPGGSDQWG---NITLGRELARRFNGFTIA--EGLTIPLVTKLDGPKFGKSESGPKW 208 (273)
T ss_pred cCCcEEEecHHHHH---HHHHHHHHHHHhCCCCCC--eEEeeccccCCCCCcCCCCCCCCcc
Confidence 45689999999963 22222222 2222 233 3455588999999999999999975
No 112
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.24 E-value=0.056 Score=55.03 Aligned_cols=50 Identities=26% Similarity=0.156 Sum_probs=36.9
Q ss_pred ceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccC
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKL 649 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~ 649 (1193)
.++++.|.||.. ++.....+.-.+.+..+ ...+.+|+++.++|+|||||+
T Consensus 94 ~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~-p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 94 CDIHLGGSDQLG-HIELGLELLKKAGGPAR-PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred cEEEEechhHHH-HHHHHHHHHHHhCCCCC-ceEEEeCCeECCCCCcCCCCC
Confidence 589999999986 55555555555544333 366778999998899999995
No 113
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.18 E-value=0.032 Score=63.20 Aligned_cols=90 Identities=22% Similarity=0.079 Sum_probs=52.3
Q ss_pred CCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChh
Q 000999 577 MPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPV 656 (1193)
Q Consensus 577 ~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~ 656 (1193)
++++.+.||.-.--++-. +-+|+...|.||.... ....-+.-.+....| -.+.|.++...+|+|||||.+|.++ .
T Consensus 132 ~~~~~~~YP~lQaaDi~~-l~~~l~~~G~DQ~~~i-~~~rd~a~r~~~~~~--~~l~~~ll~~l~G~KMSKS~~~~~~-i 206 (269)
T cd00805 132 ISFSEFIYPLLQAYDFVY-LDVDLQLGGSDQRGNI-TLGRDLIRKLGYKKV--VGLTTPLLTGLDGGKMSKSEGNAIW-D 206 (269)
T ss_pred CcHHHHHHHHHHHhhHHH-HhCCeeEecHHHHHHH-HHHHHHHHHhCCCCc--EEEeeccccCCCCCcccCCCCCccc-c
Confidence 355566676422222222 3359999999997432 211111222222333 4568889989999999999999985 2
Q ss_pred hhHhhcChhHHHHhHhh
Q 000999 657 EVINDYGADALRLYLIN 673 (1193)
Q Consensus 657 ~li~~yGaDalR~yL~~ 673 (1193)
.+ .-.++.++=++.+
T Consensus 207 ~l--~dsp~~i~~Ki~~ 221 (269)
T cd00805 207 PV--LDSPYDVYQKIRN 221 (269)
T ss_pred cC--CCCHHHHHHHHHc
Confidence 22 2345555555554
No 114
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=94.09 E-value=0.063 Score=69.97 Aligned_cols=100 Identities=23% Similarity=0.413 Sum_probs=72.2
Q ss_pred hhhhHHHHHHHHHCCCeeeeccccc--------------cCCcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCC-cc
Q 000999 413 KDADKDIIEALKAKGRLVKTGSLTH--------------SYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQT-YW 477 (1193)
Q Consensus 413 ~ea~~~Ii~~L~~~g~l~~~~~~~h--------------~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~-~~ 477 (1193)
.++-..+...|-++|++.......+ ..++|||||.+++.+..+|||+++++++++|++.++.. +|
T Consensus 132 ~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w 211 (805)
T PRK00390 132 YKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDW 211 (805)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccC
Confidence 3667788899999999887653321 14789999999999999999999999999999998876 67
Q ss_pred ccchhhhHhHHhhhhcCCceeecccc-CCCCcccEEEc
Q 000999 478 VPDYVKEKRFHNWLENARDWAVSRSR-FWGTPLPVWTS 514 (1193)
Q Consensus 478 ~P~~~~~~r~~~wl~~l~DW~ISRqr-~WG~pIPiw~~ 514 (1193)
|+.++. .-.+||..-.-+.|.=.. .-+..|++|..
T Consensus 212 -~~~v~~-~~~~wig~~~~~~i~f~~~~~~~~l~v~TT 247 (805)
T PRK00390 212 -PEKVKT-MQRNWIGRSEGAEVTFKVEDSDEKIEVFTT 247 (805)
T ss_pred -cHHHHH-HHHhhccccceEEEEEEccCCCCEEEEEeC
Confidence 887763 457888644444332100 01245777753
No 115
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.41 E-value=0.046 Score=69.71 Aligned_cols=92 Identities=22% Similarity=0.411 Sum_probs=66.4
Q ss_pred ecCCCccccCCCCCCCcchhhhhHHHHHHHHHCCCeeeecccc------------c--cCCcccCCCCCeEEeeeCcccc
Q 000999 394 VDDDGCFTGKITDFSGRYVKDADKDIIEALKAKGRLVKTGSLT------------H--SYPFCWRSDTPLIYRAVPSWFV 459 (1193)
Q Consensus 394 vd~~G~~~~~~~~~~G~~v~ea~~~Ii~~L~~~g~l~~~~~~~------------h--~yp~c~R~~~pli~~~~~qWFi 459 (1193)
+|-+-.|+..-|+|. .=.+-+.-.|.++|++.+.+... | .-..|||||+|++.+-..|||+
T Consensus 120 iDW~Ref~T~Dp~Yy-----k~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~ 194 (814)
T COG0495 120 IDWRREFATCDPEYY-----KWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFF 194 (814)
T ss_pred cccccceecCCccHH-----HHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEE
Confidence 444555555545432 22345667788888877654322 1 1268999999999999999999
Q ss_pred ccHHHHHHHHHhhcCCc--cccchhhhHhHHhhhh
Q 000999 460 RVETLKEKLLDNNKQTY--WVPDYVKEKRFHNWLE 492 (1193)
Q Consensus 460 ~~~~~k~~ll~~~~~~~--~~P~~~~~~r~~~wl~ 492 (1193)
+++++.++|++-+.... | |+.++ +.=.||+.
T Consensus 195 kit~yae~ll~~l~~l~~~w-PE~Vk-~mq~nWIg 227 (814)
T COG0495 195 KITDYADELLDDLDKLATLW-PETVK-GMQRNWIG 227 (814)
T ss_pred EechhHHHHHhhhhhhccCC-chhHH-HHHHcCcC
Confidence 99999999999888765 6 99886 45568875
No 116
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=93.29 E-value=0.042 Score=65.78 Aligned_cols=74 Identities=24% Similarity=0.154 Sum_probs=46.1
Q ss_pred cCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhh
Q 000999 595 NFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLIN 673 (1193)
Q Consensus 595 ~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~ 673 (1193)
.+.+++...|.||.. ++-.-.-+.-.+..+.+| .+...++...+|+|||||.||+|+..+ ++..++.++=++.+
T Consensus 186 ~~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~ 259 (408)
T PRK05912 186 RYGCDLQLGGSDQWG-NILSGRDLQRRYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMN 259 (408)
T ss_pred cCCCCEEeccHHHHH-HHHHHHHHHHHhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhc
Confidence 468999999999974 222211122223233343 345667778899999999999998764 22345555555544
No 117
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=93.19 E-value=0.37 Score=56.12 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=38.6
Q ss_pred CCceeEEecccCccch-HHHHHHHHHH-ccCC-CCccEEEEEee---EEccCCccccccCCC-CCChhhhHhhcChhHHH
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLSTA-LFGK-PAFRNLICNGL---VLAEDGKKMSKKLKN-YPSPVEVINDYGADALR 668 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~~-l~~~-~pfk~v~~hG~---vld~~G~KMSKS~GN-~v~P~~li~~yGaDalR 668 (1193)
|-+|+...|.||..-. +.+-++.... .++. .+-...+.|.+ +...+|+|||||.+| .|...| .+|.+|
T Consensus 138 ~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D-----~~e~I~ 212 (328)
T TIGR00233 138 YQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD-----TPKQIK 212 (328)
T ss_pred cCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecC-----CHHHHH
Confidence 4578999999997532 2222222211 0111 01113344444 444567899999997 776543 444444
Q ss_pred HhHhh
Q 000999 669 LYLIN 673 (1193)
Q Consensus 669 ~yL~~ 673 (1193)
=-+.+
T Consensus 213 ~KI~~ 217 (328)
T TIGR00233 213 KKIRK 217 (328)
T ss_pred HHHHh
Confidence 44443
No 118
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=92.76 E-value=0.36 Score=58.96 Aligned_cols=73 Identities=26% Similarity=0.237 Sum_probs=48.7
Q ss_pred CceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhh-cChhHHHHhHhh
Q 000999 597 PGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIND-YGADALRLYLIN 673 (1193)
Q Consensus 597 Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~-yGaDalR~yL~~ 673 (1193)
-.+-++-|.|++.. ....+.+--++.-. ...+..+.++++.+|+||||++| .+...++++. |-+.+++-|++.
T Consensus 197 ~ithvIrG~d~~~~-t~~~~~l~~aLg~~--~p~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 197 KITHVIRGEDHISN-TPKQILIYQALGWK--IPVFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred CCCEEEECchhhcC-HHHHHHHHHHcCCC--CCeEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHH
Confidence 34566688888753 33333333333222 23677777888899999999999 8888888886 346666666654
No 119
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=92.49 E-value=0.53 Score=51.87 Aligned_cols=46 Identities=30% Similarity=0.306 Sum_probs=36.2
Q ss_pred cEEEEEeeEEccCCccccccCCCCCChhhhHh-hcChhHHHHhHhhCC
Q 000999 629 RNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-DYGADALRLYLINSP 675 (1193)
Q Consensus 629 k~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-~yGaDalR~yL~~~~ 675 (1193)
-....++++++++|+|||||.|+ +....+.+ .|.+++++-|++..+
T Consensus 138 P~~~H~pll~~~~g~KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG 184 (230)
T cd00418 138 PRFYHFPRLLLEDGTKLSKRKLN-TTLRALRRRGYLPEALRNYLALIG 184 (230)
T ss_pred CeEEEeeeeeCCCCCCccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcC
Confidence 37788899999999999999998 44555443 378999999987643
No 120
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.93 E-value=0.056 Score=65.61 Aligned_cols=50 Identities=28% Similarity=0.704 Sum_probs=42.7
Q ss_pred CcccCCCCCeEEeeeCccccccHHHHHHHHHhhcCC-ccccchhhhHhHHhhhh
Q 000999 440 PFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNNKQT-YWVPDYVKEKRFHNWLE 492 (1193)
Q Consensus 440 p~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~~~~-~~~P~~~~~~r~~~wl~ 492 (1193)
+.+||||.+++-+...||||+++++.++|++.++.. .| |+ ++ +.=.||+-
T Consensus 199 G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W-~~-vk-~mQrnWIG 249 (876)
T KOG0435|consen 199 GCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEW-PE-VK-DMQRNWIG 249 (876)
T ss_pred CccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhh-hh-HH-HHHHhhcc
Confidence 789999999999999999999999999999999976 56 66 54 34467874
No 121
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.92 E-value=1.3 Score=51.66 Aligned_cols=147 Identities=21% Similarity=0.304 Sum_probs=93.9
Q ss_pred CCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceec-----ccchhhHHHHHHHHH---HcCCCCc-chh
Q 000999 39 QPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRF-----GWDCHGLPVENEIDK---TLGIKRR-DDV 109 (1193)
Q Consensus 39 ~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~-----G~D~hGlpie~~v~k---~lg~~~~-~~~ 109 (1193)
.++-++-..-||.--.+|+||++..+|.|.++|-....|+.|+++- |+ -+|+=|++-.+| .+..++. .|+
T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGT-QFGMLIahL~dkFPd~l~vsp~IgDL 265 (656)
T KOG4426|consen 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGT-QFGMLIAHLFDKFPDYLSVSPPIGDL 265 (656)
T ss_pred eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHH-HHHHHHHHHHHhCCchhccCCCchhH
Confidence 3455666688999999999999999999999999999999999974 43 356677776665 1222221 000
Q ss_pred --------hhcC-HHHHHHHHH------------------HHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHH
Q 000999 110 --------FQMG-IDKYNEACR------------------SIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWW 162 (1193)
Q Consensus 110 --------~~~g-~~~f~~~c~------------------~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~ 162 (1193)
..+. -++|.+++- .+|+-..++.....+||.+++-=..+ .-|......
T Consensus 266 QvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~GE-----SFYq~~m~~ 340 (656)
T KOG4426|consen 266 QVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKERGE-----SFYQDRMAE 340 (656)
T ss_pred HHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhcch-----hhhhhHHHH
Confidence 0011 123433332 23344445555666777654432111 225555667
Q ss_pred HHHHHHHcCceeee-ceeccccCCCCCccC
Q 000999 163 VFAQLYEKGLVYKG-FKVMPYSTGCKTPLS 191 (1193)
Q Consensus 163 ~f~~L~~kGliy~~-~~~v~wcp~~~T~Ls 191 (1193)
+...|-.||++... -+.+-|-+.|.-||.
T Consensus 341 vveel~~kglvee~~Gr~i~f~~g~~IPLt 370 (656)
T KOG4426|consen 341 VVEELKSKGLVEEDDGRRIMFPEGCDIPLT 370 (656)
T ss_pred HHHHHhcCCceeecCCceEeccCCCCcceE
Confidence 77788999999864 355668888887774
No 122
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=91.58 E-value=0.16 Score=58.26 Aligned_cols=62 Identities=18% Similarity=0.071 Sum_probs=37.2
Q ss_pred CCceeEEecccCccch-HHHHHHHHHHccCCCCccEEEEEeeEEccCCc-cccccCCC-CCChhh
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLSTALFGKPAFRNLICNGLVLAEDGK-KMSKKLKN-YPSPVE 657 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~-KMSKS~GN-~v~P~~ 657 (1193)
+-+|+...|.||.... +.+-++-........|-...+.+.++...+|. |||||.+| .|+..|
T Consensus 148 l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d 212 (292)
T PF00579_consen 148 LKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDD 212 (292)
T ss_dssp TTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTT
T ss_pred eccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEec
Confidence 3467999999997532 11111111111111223357777788889999 99999999 776544
No 123
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=91.55 E-value=0.17 Score=60.06 Aligned_cols=76 Identities=21% Similarity=0.112 Sum_probs=44.5
Q ss_pred CCcccccCCCCChhhhhhcCCceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChh
Q 000999 577 MPYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPV 656 (1193)
Q Consensus 577 ~p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~ 656 (1193)
++++.+-||.-.--+|-. +-+|+...|.||.. ++-.-..+.-.+.++.+| .+...++...+|.|||||.||.|+..
T Consensus 158 is~~ef~YpllQa~D~~~-l~~di~~gG~DQ~~-ni~~g~dLar~~~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~ 233 (377)
T TIGR00234 158 ISLSEFIYPLLQAYDFVY-LNVDLQIGGSDQWG-NIRKGRDLIRRNLPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLD 233 (377)
T ss_pred CCchhhhhHHHHHHHHHH-HcCCeeEecchhHH-HHHHHHHHHHHhcCCCce--eeceeeecCCCCCCccCCCCCcccCC
Confidence 466667777522222322 34789999999953 222222222223344444 24444556678999999999998754
No 124
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=91.38 E-value=0.23 Score=57.82 Aligned_cols=59 Identities=24% Similarity=0.263 Sum_probs=35.4
Q ss_pred cCCceeEEecccCccch-HHHHHHHHHH-ccC---CCCccEEE--EEeeEEccCCccccccCCCCCC
Q 000999 595 NFPGQFIAEGLDQTRGW-FYTLMVLSTA-LFG---KPAFRNLI--CNGLVLAEDGKKMSKKLKNYPS 654 (1193)
Q Consensus 595 ~~Pad~~~~G~D~~r~W-f~~l~~~~~~-l~~---~~pfk~v~--~hG~vld~~G~KMSKS~GN~v~ 654 (1193)
.|.+|+...|.||..-. +.+-++...- .++ ..| .-++ .+-++-..+|+|||||.+|.|.
T Consensus 147 ~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P-~~~~~~~~~~l~gLdg~KMSKS~~n~I~ 212 (332)
T PRK12556 147 LFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP-EYVIQEEGAILPGLDGRKMSKSYGNVIP 212 (332)
T ss_pred hccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc-eeccccccccccCCCCCCCCCCCCCccc
Confidence 36689999999997532 3333322211 111 112 2222 3556666789999999999884
No 125
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.93 E-value=0.37 Score=57.99 Aligned_cols=95 Identities=21% Similarity=0.281 Sum_probs=55.8
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+.+-=||=|||-||||||-+.-+-==+++| +.|..-++ +|.. .|..
T Consensus 249 V~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~cyLR---fDDT--------------NPEk--------------- 294 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVCYLR---FDDT--------------NPEK--------------- 294 (764)
T ss_pred eEEeCCCCCCceeeecchhheeechhhhhh--hCCeEEEe---cCCC--------------Ccch---------------
Confidence 566779999999999999653322112222 22322221 1211 1211
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
-..+|-..+++...-|| |+..-.|.+.+|-......-.+|..+|+.|--
T Consensus 295 -Eee~yf~sI~e~V~WLG----~~P~kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764)
T KOG1148|consen 295 -EEEEYFESIKEMVAWLG----FEPYKVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764)
T ss_pred -hhHHHHHHHHHHHHHhC----CCceeeecchhHHHHHHHHHHHHHhcCceeEE
Confidence 12346667777776666 56666787766655555555679999999864
No 126
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=90.90 E-value=0.32 Score=60.15 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=49.2
Q ss_pred cEEEEEeeEEccCCccccccC-------C--------CCCChhhhHhh-cChhHHHHhHhhCCccccccccccHhHHHHH
Q 000999 629 RNLICNGLVLAEDGKKMSKKL-------K--------NYPSPVEVIND-YGADALRLYLINSPVVRAETLRFKKDGVFAV 692 (1193)
Q Consensus 629 k~v~~hG~vld~~G~KMSKS~-------G--------N~v~P~~li~~-yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~ 692 (1193)
....-+|++. .+|.|||||+ | +..+...+.++ |.++|+|.|++..+. ...|..|+++.+...
T Consensus 324 P~~~H~~~L~-~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~-s~~~~~~~~~~L~~~ 401 (567)
T PRK04156 324 PETIHYGRLK-IEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGV-KETDATISWENLYAI 401 (567)
T ss_pred ceEEEcceec-CCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCC-CCCCcccCHHHHHHH
Confidence 4677888876 5899999998 4 22344444444 889999999997766 446889999988776
Q ss_pred HHhhh
Q 000999 693 VKDVF 697 (1193)
Q Consensus 693 ~~~~l 697 (1193)
.++.+
T Consensus 402 nr~~l 406 (567)
T PRK04156 402 NRKLI 406 (567)
T ss_pred HHHHH
Confidence 55544
No 127
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=89.95 E-value=1.5 Score=51.43 Aligned_cols=129 Identities=20% Similarity=0.232 Sum_probs=81.3
Q ss_pred CCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHH
Q 000999 48 PPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTR 127 (1193)
Q Consensus 48 PP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~ 127 (1193)
-|-|||.||+|-++|-..-=+++| ...|.-+++.=-+|-.- -+.+
T Consensus 39 APSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq~R-----------~v~g---------------------- 83 (524)
T KOG1149|consen 39 APSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQKR-----------LIRG---------------------- 83 (524)
T ss_pred cCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEeccccccc-----------cccc----------------------
Confidence 478899999999999877766665 45688888876655321 1111
Q ss_pred HHHHHHHHHHHhCCcccccCccccCCh--hHHHHH-----HHHHHHHHHcCceeee----------------ceecc-cc
Q 000999 128 YVEEWEQIITRTGRWIDFRNDYKTMDL--KFMESV-----WWVFAQLYEKGLVYKG----------------FKVMP-YS 183 (1193)
Q Consensus 128 ~~~~~~~~~~~lG~~iD~~~~y~T~d~--~y~~~v-----~~~f~~L~~kGliy~~----------------~~~v~-wc 183 (1193)
-..++.+.++-+| ++||-.=.--.| .|.++. ...-.+|.+.|..|+- .+.+| |+
T Consensus 84 s~e~i~~~L~w~n--l~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD 161 (524)
T KOG1149|consen 84 SEEAIYEDLKWAN--LDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYD 161 (524)
T ss_pred hHHHHHHHHHhcC--CCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCccc
Confidence 1234556777778 777743111110 133322 2333567788888874 34466 66
Q ss_pred CCCCCccCcccccccccccCCCeEEEEeeecCC
Q 000999 184 TGCKTPLSNFEAGQNYKDVPDPEIMVSFPIVGD 216 (1193)
Q Consensus 184 p~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~ 216 (1193)
-.|. -||+.|+.+ +.-+++-..|+|++.+.
T Consensus 162 ~kca-~ls~~ei~~--~lakg~pf~iRFrl~~~ 191 (524)
T KOG1149|consen 162 RKCA-NLSDAEIKQ--KLAKGTPFTIRFRLPKE 191 (524)
T ss_pred chhc-ccCHHHHHH--HHhcCCCeeEEEecCCC
Confidence 6665 489888865 45677788899998764
No 128
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=89.36 E-value=0.32 Score=56.77 Aligned_cols=57 Identities=23% Similarity=0.155 Sum_probs=38.9
Q ss_pred CCceeEEecccCccchHHHHHHHHH--HccCCCCccEEEEEeeEEccCCc--cccccC-CCCCChhh
Q 000999 596 FPGQFIAEGLDQTRGWFYTLMVLST--ALFGKPAFRNLICNGLVLAEDGK--KMSKKL-KNYPSPVE 657 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~Wf~~l~~~~~--~l~~~~pfk~v~~hG~vld~~G~--KMSKS~-GN~v~P~~ 657 (1193)
+.+|+...|.||... .+++.-. .+....| ..+.|.++...+|. |||||. ||+|+..|
T Consensus 167 ~~ad~vpvG~DQ~~h---~~l~Rdia~~~n~~~p--~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 167 LDVDIAVGGMDQRKI---HMLAREVLPKLGYKKP--VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred hCCCEEEechhHHHH---HHHHHHhhHhcCCCCc--eEEEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 578999999999742 2222222 2222233 45568888888988 999999 99998643
No 129
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.32 E-value=0.92 Score=54.20 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=66.2
Q ss_pred EEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHH
Q 000999 43 VFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACR 122 (1193)
Q Consensus 43 ~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~ 122 (1193)
+++-=||-|+|.||||||-+-.+- -|... -|+=..+.-||.+--.=|
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLN----qYfa~-~~~G~LIvRFDDTNPaKE---------------------------- 247 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLN----QYFAQ-AYQGKLIVRFDDTNPAKE---------------------------- 247 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHH----HHHHH-hcCceEEEEecCCCcchh----------------------------
Confidence 556669999999999999875542 33222 233333344554431111
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccCccccCChhHHHHHHHHHHHHHHcCceeeecee
Q 000999 123 SIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFMESVWWVFAQLYEKGLVYKGFKV 179 (1193)
Q Consensus 123 ~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~~~v~~~f~~L~~kGliy~~~~~ 179 (1193)
-.+|...+.+++..|| |.-|+ .|...+|-+.....-.+|...|-.|-+..|
T Consensus 248 --~~eFe~~IleDl~~Lg--Ikpd~--~TyTSDyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 248 --NEEFEDVILEDLSLLG--IKPDR--VTYTSDYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred --hHHHHHHHHHHHHHhC--cCcce--eeechhhHHHHHHHHHHHHhcCcccccCCc
Confidence 1236678889999999 65554 477778888888889999999999987554
No 130
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=88.61 E-value=0.93 Score=50.31 Aligned_cols=75 Identities=25% Similarity=0.233 Sum_probs=49.3
Q ss_pred CceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHh-hcChhHHHHhHhhCC
Q 000999 597 PGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-DYGADALRLYLINSP 675 (1193)
Q Consensus 597 Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-~yGaDalR~yL~~~~ 675 (1193)
-++-++-|.|++. +......+.-++ |-++ .....++.+++.+|+|||||.|| .....+.+ .+-+.+++-|++..+
T Consensus 118 ~ithViRG~D~~~-~t~~q~~l~~aL-g~~~-p~~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG 193 (239)
T cd00808 118 GITHVIRGEEHLS-STPKQILLYEAL-GWEP-PKFAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLG 193 (239)
T ss_pred CCCEEEEChhhhh-ChHHHHHHHHHc-CCCC-CceEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcC
Confidence 4566777888874 233333333333 2222 36677888889999999999999 44444433 367899999988643
No 131
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.55 E-value=0.38 Score=57.31 Aligned_cols=60 Identities=25% Similarity=0.295 Sum_probs=35.2
Q ss_pred CCceeEEecccCccch-HHHHHHHHHH-ccCCCCc---cEEE--EEeeEEccCCccccccCCCCCCh
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLSTA-LFGKPAF---RNLI--CNGLVLAEDGKKMSKKLKNYPSP 655 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~~-l~~~~pf---k~v~--~hG~vld~~G~KMSKS~GN~v~P 655 (1193)
|-+|+..-|.||..-. +.+-++...- .++...| ..++ .+..+...+|+|||||.+|.|..
T Consensus 147 y~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L 213 (431)
T PRK12284 147 FNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPL 213 (431)
T ss_pred cCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEeee
Confidence 5689999999997521 2333322211 1221111 2222 13466677899999999998854
No 132
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=87.17 E-value=1 Score=49.17 Aligned_cols=50 Identities=22% Similarity=0.179 Sum_probs=34.3
Q ss_pred eEEecccCccchHHHHHHHHHHccCC-CCccEEEEEeeEEccCCccccccCC
Q 000999 600 FIAEGLDQTRGWFYTLMVLSTALFGK-PAFRNLICNGLVLAEDGKKMSKKLK 650 (1193)
Q Consensus 600 ~~~~G~D~~r~Wf~~l~~~~~~l~~~-~pfk~v~~hG~vld~~G~KMSKS~G 650 (1193)
+++.|.||. .+|..+..+.-++.-. .|--..+.+|+|+.++|+||||+.|
T Consensus 162 i~v~g~~~~-~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 162 IYVVGADHH-GHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEECCCHH-HHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 558999997 4666665554444322 2323456679999988999999987
No 133
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.10 E-value=0.48 Score=56.25 Aligned_cols=53 Identities=25% Similarity=0.171 Sum_probs=35.7
Q ss_pred ceeEEecccCccchHHHHHHHHHHc-cCCCCccEEEEEeeEEccCCccccccCCCCCC
Q 000999 598 GQFIAEGLDQTRGWFYTLMVLSTAL-FGKPAFRNLICNGLVLAEDGKKMSKKLKNYPS 654 (1193)
Q Consensus 598 ad~~~~G~D~~r~Wf~~l~~~~~~l-~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~ 654 (1193)
.|+.+.|.|| |+..+++.-..= .+. +-.-.+.+-++...+|.|||||.||.++
T Consensus 181 ~dlq~GG~DQ---~~ni~~grdl~rr~g~-~~~~~lt~PLL~~ldG~KmgKs~~~a~~ 234 (401)
T COG0162 181 KDLQLGGSDQ---WGNILAGRDLIRRLGQ-KKVVGLTTPLLTGLDGKKMGKSEGGAVW 234 (401)
T ss_pred cchhcCChHH---HHHHHHHHHHHHHhCC-CCeEEEEeccccCCCCCcccccCCCceE
Confidence 5688999999 555554333221 122 2234677888888999999999999443
No 134
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=86.37 E-value=0.52 Score=55.02 Aligned_cols=79 Identities=27% Similarity=0.364 Sum_probs=42.6
Q ss_pred CcccccCCCCChhhhhhcCCceeEEecccCccch-HHHHHHHHHH-ccCCCCc---cEEEE-EeeEEccCC-ccccccCC
Q 000999 578 PYAYIHYPFENAEHFENNFPGQFIAEGLDQTRGW-FYTLMVLSTA-LFGKPAF---RNLIC-NGLVLAEDG-KKMSKKLK 650 (1193)
Q Consensus 578 p~a~~~~p~~~~~~f~~~~Pad~~~~G~D~~r~W-f~~l~~~~~~-l~~~~pf---k~v~~-hG~vld~~G-~KMSKS~G 650 (1193)
+.+.+.||.-.--+. -.|.+|+...|.||...+ +.+-++-..- .++++-| +.++. |.++...+| .|||||.+
T Consensus 124 ~~g~l~YP~lqaaDI-l~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~ 202 (333)
T PRK12282 124 PAGFLTYPVSQAADI-TAFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLG 202 (333)
T ss_pred cchhhcchHHHHHHH-HhhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCC
Confidence 344556764211111 147889999999997532 2333332221 1222111 12221 445555676 89999999
Q ss_pred CCCChhh
Q 000999 651 NYPSPVE 657 (1193)
Q Consensus 651 N~v~P~~ 657 (1193)
|.|...|
T Consensus 203 ~~I~L~D 209 (333)
T PRK12282 203 NAIYLSD 209 (333)
T ss_pred CeeeeeC
Confidence 9887544
No 135
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=85.00 E-value=0.54 Score=55.52 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=36.8
Q ss_pred CCceeEEecccCccch-HHHHHHHHH-HccCCCCccEEEEEeeEEccCCccccccC-CCCCChhh
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLST-ALFGKPAFRNLICNGLVLAEDGKKMSKKL-KNYPSPVE 657 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~-~l~~~~pfk~v~~hG~vld~~G~KMSKS~-GN~v~P~~ 657 (1193)
|-++++..|.||...+ +.+-++-.. ..++-.++ ..+.|-++...+|+|||||. +|.|...|
T Consensus 202 ~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P-~~l~~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 202 PKPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKP-SSTYHKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CCceEEEeccchHHHHHHHHHHHHHHhhhcCCCCc-hhHhhhcccCCCCCcCCCCCCCCeeeccC
Confidence 4568999999997532 222222221 01122222 34456677788999999998 67887654
No 136
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.55 E-value=0.76 Score=52.68 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=36.8
Q ss_pred CCceeEEecccCccch-HHHHHHHHHH-cc-CCCCccEEEEEe--eEEccCC-ccccccCCC-CCC
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLSTA-LF-GKPAFRNLICNG--LVLAEDG-KKMSKKLKN-YPS 654 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~~-l~-~~~pfk~v~~hG--~vld~~G-~KMSKS~GN-~v~ 654 (1193)
|-++++.-|.||..-+ ..+=++...- .+ ..-|-...+.|. ++.+.+| +|||||.+| +|.
T Consensus 144 ~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~ 209 (314)
T COG0180 144 YQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIF 209 (314)
T ss_pred ccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeee
Confidence 5578899999997532 3333333221 11 111223556666 8888889 899999999 664
No 137
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=84.44 E-value=0.91 Score=53.92 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=40.8
Q ss_pred cCCceeEEecccCccchHHHHHHHHHH-ccCCCCccEEEEEeeEEcc-CC-ccccccCCC-CCChhhhHhhcChhHHHHh
Q 000999 595 NFPGQFIAEGLDQTRGWFYTLMVLSTA-LFGKPAFRNLICNGLVLAE-DG-KKMSKKLKN-YPSPVEVINDYGADALRLY 670 (1193)
Q Consensus 595 ~~Pad~~~~G~D~~r~Wf~~l~~~~~~-l~~~~pfk~v~~hG~vld~-~G-~KMSKS~GN-~v~P~~li~~yGaDalR~y 670 (1193)
.+-+|+...|.||-... +++.-.+ -++..+-.-++.|.++... +| +|||||.+| +|...| .++.+|=-
T Consensus 208 ~l~adivpvG~DQ~~~~---~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D-----spe~I~kK 279 (383)
T PTZ00126 208 YLKADICQLGMDQRKVN---MLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED-----SEEDVNRK 279 (383)
T ss_pred ccCCCEEEeCccHHHHH---HHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeecCCC-----CHHHHHHH
Confidence 35789999999996422 2222211 1232211134467777777 45 799999987 576554 44444444
Q ss_pred Hhh
Q 000999 671 LIN 673 (1193)
Q Consensus 671 L~~ 673 (1193)
+.+
T Consensus 280 I~k 282 (383)
T PTZ00126 280 IKK 282 (383)
T ss_pred HHh
Confidence 443
No 138
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.18 E-value=11 Score=45.27 Aligned_cols=154 Identities=17% Similarity=0.146 Sum_probs=89.3
Q ss_pred CCChhhhHhhcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCchhh-hh
Q 000999 652 YPSPVEVINDYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPWYNAYRFLVQNAKRLEIEGGAPFIPLDLA-TL 730 (1193)
Q Consensus 652 ~v~P~~li~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl~N~~~f~~~~~~~~~~~~~~~~~p~~~~-~~ 730 (1193)
.-+|+++.+..|+-|+..-.+... +..+..|+|+++... +.. .-+ .+.+-..++..+..+++. +.++... ..
T Consensus 403 ~~~~~~vad~lg~sAviv~d~k~r--r~s~yeF~w~~~~~~-~gd-tg~--yLQY~HsRL~Slerk~~~-~~~~~l~~~d 475 (567)
T KOG1195|consen 403 MANPDEVADRLGLSAVIVQDFKGR--RISNYEFSWNRVLSF-EGD-TGP--YLQYTHSRLRSLERKFSD-VTLDDLDEID 475 (567)
T ss_pred CCCHHHHHHHHhhHHHHHHHHHHH--hcccceEEhhhhhee-cCC-chH--HHHHHHHHHHHHHHhccc-cCchhhhccc
Confidence 345889999999999998776432 245788999887542 110 000 122333455555444432 2221110 00
Q ss_pred hcCCchh-HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCCh--HHHHHHHHHHHHHH
Q 000999 731 QKSSNVL-DQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGE--DDCRIALSTLYNVL 807 (1193)
Q Consensus 731 ~~~~~~~-D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~--~~~~~a~~tL~~vL 807 (1193)
...+.+- -.-|+..|..+.+-+..+|+.++.+..+..+.++...++..|=. -|.++...+ -.|...+.....||
T Consensus 476 ~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~---l~V~d~~~eia~aRL~Lf~AvRqVL 552 (567)
T KOG1195|consen 476 FSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKI---LWVKDSPMEIALARLLLFSAVRQVL 552 (567)
T ss_pred hhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhh---eeecCCcHHHHHHHHHHHHHHHHHH
Confidence 0011111 23477888899999999999999999999999998878887732 233332211 12333344556666
Q ss_pred HHHHHhcC
Q 000999 808 LTSCKVMA 815 (1193)
Q Consensus 808 ~~l~~LLa 815 (1193)
.+-+++|.
T Consensus 553 ~ngm~lLG 560 (567)
T KOG1195|consen 553 NNGMRLLG 560 (567)
T ss_pred HhHHHHhC
Confidence 66666664
No 139
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=83.89 E-value=0.96 Score=51.57 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=40.7
Q ss_pred CCceeEEecccCccch-HHHHHHHHHHccCC----CCccEEEEE--eeEEccCC--ccccccCC-CCCChhhhHhhcChh
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLSTALFGK----PAFRNLICN--GLVLAEDG--KKMSKKLK-NYPSPVEVINDYGAD 665 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~~l~~~----~pfk~v~~h--G~vld~~G--~KMSKS~G-N~v~P~~li~~yGaD 665 (1193)
+-+++..-|.||.... +.+-+ +-.+... .+-...+.| .++...+| +|||||.+ |.|+..| .++
T Consensus 136 ~~~~~vpvG~DQ~~h~~l~Rdi--a~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d-----~~~ 208 (280)
T cd00806 136 YKACLVPVGIDQDPHLELTRDI--ARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD-----SPK 208 (280)
T ss_pred ccCCEEeeccccHHHHHHHHHH--HHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC-----CHH
Confidence 3458888899996421 12222 2122211 122355666 77776676 59999998 9998654 444
Q ss_pred HHHHhHh
Q 000999 666 ALRLYLI 672 (1193)
Q Consensus 666 alR~yL~ 672 (1193)
.+|=-+.
T Consensus 209 ~i~~KI~ 215 (280)
T cd00806 209 EIKKKIM 215 (280)
T ss_pred HHHHHHH
Confidence 4554443
No 140
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=83.38 E-value=3.9 Score=50.16 Aligned_cols=72 Identities=26% Similarity=0.203 Sum_probs=50.1
Q ss_pred eeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhh-cChhHHHHhHhhC
Q 000999 599 QFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIND-YGADALRLYLINS 674 (1193)
Q Consensus 599 d~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~-yGaDalR~yL~~~ 674 (1193)
+-++-|.|++-. ....+.+--++.-.. ..+..+.++++.+|+||||+.| .+...++++. |-+.|++-|++..
T Consensus 209 thvIrG~d~~~~-t~~q~~l~~alG~~~--p~~~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~l 281 (476)
T PRK01406 209 THVIRGEDHLSN-TPKQILLYEALGWEV--PVFAHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALL 281 (476)
T ss_pred CEEEECchhhcC-HHHHHHHHHHhCCCC--CeEEEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHh
Confidence 556678888753 223333333332222 3666678888999999999999 8888988886 5789999998764
No 141
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=82.65 E-value=3.9 Score=50.24 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=55.5
Q ss_pred CceeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHh-hcChhHHHHhHhhCC
Q 000999 597 PGQFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-DYGADALRLYLINSP 675 (1193)
Q Consensus 597 Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-~yGaDalR~yL~~~~ 675 (1193)
-.+-++-|.|++. +....+.+.-++.-. ......+++|++.+|+||||+.|.. ...++.+ .|-+.|++=||+..+
T Consensus 196 ~ithVIRG~d~~~-~t~~q~~l~~aLG~~--~p~~~H~plv~~~~g~KLSKR~g~~-~i~~~r~~G~~Peai~n~la~LG 271 (513)
T PRK14895 196 GITHIIRGDDHLT-NAARQLAIYQAFGYA--VPSMTHIPLIHGADGAKLSKRHGAL-GIEAYKDMGYLPESLCNYLLRLG 271 (513)
T ss_pred CCCEEEECchHhh-hHHHHHHHHHHcCCC--CCeEEEEEeEEcCCCCccccccCch-hHHHHHHCCCCHHHHHHHHHHhC
Confidence 4555667888874 333444444444322 2378888999999999999999875 3444443 477999999998433
Q ss_pred ccccccccccHhHH
Q 000999 676 VVRAETLRFKKDGV 689 (1193)
Q Consensus 676 ~~~~~d~~Fs~~~v 689 (1193)
...++.--|+.+.+
T Consensus 272 ~s~~~~e~~~~~el 285 (513)
T PRK14895 272 WSHGDDEIISMTQA 285 (513)
T ss_pred CCCCCcCCCCHHHH
Confidence 21122224555444
No 142
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=82.18 E-value=1 Score=53.22 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=26.5
Q ss_pred EEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhh
Q 000999 633 CNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLIN 673 (1193)
Q Consensus 633 ~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~ 673 (1193)
-+.+|.+.+|+|||||.+|.|...| .+|.+|=-+..
T Consensus 253 ~~~~I~gLdg~KMSKS~~n~I~L~D-----s~~~I~kKI~~ 288 (398)
T PRK12283 253 EASKMPGLDGQKMSKSYGNTIGLRE-----DPESVTKKIRT 288 (398)
T ss_pred CCCcccCCCCCcCCCCCCCeeeCcC-----CHHHHHHHHHh
Confidence 3677888899999999999987654 45555555544
No 143
>PLN02734 glycyl-tRNA synthetase
Probab=79.62 E-value=3.8 Score=51.79 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=49.5
Q ss_pred EeeccChHHHhhHHhhhHHHHHHHHHhcCHHHHHHH----HhCCcEEE--c--e--EEeeCCcEEEEEEec
Q 000999 930 LRAEPDFSVLGKRLGRSMGVVAKEVKAMSQEDILAF----EKSGEVTI--A--T--HCLQLADIKVVREFK 990 (1193)
Q Consensus 930 ~~~~~d~~~lg~rl~k~~~~v~~~l~~~~~~~~~~~----~~~g~~~~--~--g--~~l~~~~v~i~~~~~ 990 (1193)
+.+.||.+.+|++++++.+.|.++|.+++++++.++ .++|++++ + | ++|+.++|.|....+
T Consensus 450 ~~~~~~~~~~g~~fk~~~~~v~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 520 (684)
T PLN02734 450 LVIVPNKKELGLAFKGDQKVVVEALEAMNEKEAMEMKAKLESKGEAEFYVCTLGKEVEIKKNMVSISKEKK 520 (684)
T ss_pred EEEecchhhhhHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhcCceeeeecccCcceeechhheeeeeeee
Confidence 567899999999999999999999999999988664 45576555 3 3 688899988776543
No 144
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=79.14 E-value=6.7 Score=46.52 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=57.8
Q ss_pred HHHHhcCCccccccc------CCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHH
Q 000999 21 EFWNSIDAFKTQLDR------TRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVE 94 (1193)
Q Consensus 21 ~~W~~~~~f~~~~~~------~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie 94 (1193)
..+-+.++|-...+. -+.+++|.+|.|- -|||.+|+||... -....+++. .|++|.+..+=+|. +
T Consensus 40 h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG~-~PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~ha-~--- 110 (368)
T PRK12285 40 HPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTGF-MPSGPMHIGHKMV---FDELKWHQE-FGANVYIPIADDEA-Y--- 110 (368)
T ss_pred chHHhcCeeeecCCHHHHHHHHhcCCCeEEEEcc-CCCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecchHH-H---
Confidence 445556666443221 1235678888887 2349999999753 334556666 78887666654443 1
Q ss_pred HHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhH
Q 000999 95 NEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKF 156 (1193)
Q Consensus 95 ~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y 156 (1193)
..+ +.+ . +++++++.+ ...++..+| +|.++...-.+..+
T Consensus 111 --~~~--~~~---------~----e~~~~~~~~----~~~~~lA~G--~Dp~k~~i~~qS~~ 149 (368)
T PRK12285 111 --AAR--GLS---------W----EETREWAYE----YILDLIALG--FDPDKTEIYFQSEN 149 (368)
T ss_pred --hcC--CCC---------H----HHHHHHHHH----HHHHHHHhC--CCccceEEEECCch
Confidence 000 111 1 234444444 455777889 78776554334333
No 145
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=77.37 E-value=6.8 Score=47.26 Aligned_cols=74 Identities=26% Similarity=0.275 Sum_probs=45.8
Q ss_pred eeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHh-hcChhHHHHhHhhCC
Q 000999 599 QFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-DYGADALRLYLINSP 675 (1193)
Q Consensus 599 d~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-~yGaDalR~yL~~~~ 675 (1193)
.-++-|.|.+..-+.- +.+--++ |-.|+.....++++++.+|+||||+.|. +...++.+ .|-++|++=||+..+
T Consensus 192 ThViRG~d~l~~tp~Q-i~Ly~aL-g~~~pp~f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG 266 (433)
T PRK12410 192 SLIIRGEDHVSNTPKQ-ILIREAL-GYNKEITYAHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLG 266 (433)
T ss_pred CEEEechhhhhCcHHH-HHHHHHc-CCCCCCeEEEeeeeeCCCCCeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhC
Confidence 3455566665442211 1122222 3232236677789999999999999885 34555544 577999999988654
No 146
>PLN02486 aminoacyl-tRNA ligase
Probab=75.53 E-value=2.3 Score=50.53 Aligned_cols=67 Identities=19% Similarity=0.114 Sum_probs=39.1
Q ss_pred eeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCC--ccccccCCC-CCChhhhHhhcChhHHHHhHhh
Q 000999 599 QFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDG--KKMSKKLKN-YPSPVEVINDYGADALRLYLIN 673 (1193)
Q Consensus 599 d~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-~v~P~~li~~yGaDalR~yL~~ 673 (1193)
.++--|.||.. |+-..--++-.+....| .++.|.++...+| .|||||.+| .|...| .++.++=.+.+
T Consensus 221 ~lVPvG~DQd~-~~~ltRdia~r~~~~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 221 CLIPCAIDQDP-YFRMTRDVAPRLGYYKP--ALIESRFFPALQGESGKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred ceeecccchHH-HHHHHHHHHHHhCCCCc--ceeccccccCCCCCCCcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 56777999964 33222222333333344 3444566666676 799999988 687665 45555554443
No 147
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=74.31 E-value=8.9 Score=43.80 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=41.1
Q ss_pred CCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHHHHHHHH
Q 000999 50 FATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRSIVTRYV 129 (1193)
Q Consensus 50 ~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~~~~~~~ 129 (1193)
-|||.||+||.++.+.. ..+.+.. |+++.+.-+ |-|++ .+.. ...+ .+ .++.
T Consensus 7 ~PTG~lHLG~~~~al~~--~~~lQ~a-g~~~~~~Ia-D~ha~---------t~~~-------~~~~----~~----~~~~ 58 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF--WVWLQEA-GYELFFFIA-DLHAL---------TVKQ-------LDPE----EL----RQNT 58 (280)
T ss_pred CCCchhhHHHHHHHHHH--HHHHHhC-CCCEEEEec-chHHH---------hCCC-------CCHH----HH----HHHH
Confidence 36799999999885543 3444443 888766654 44444 1111 0111 12 2355
Q ss_pred HHHHHHHHHhCCcccccCcc
Q 000999 130 EEWEQIITRTGRWIDFRNDY 149 (1193)
Q Consensus 130 ~~~~~~~~~lG~~iD~~~~y 149 (1193)
.++..++.++| +|+++..
T Consensus 59 ~~~~~~~lA~G--~dp~k~~ 76 (280)
T cd00806 59 RENAKDYLACG--LDPEKST 76 (280)
T ss_pred HHHHHHHHHcC--CCcccCE
Confidence 56777888899 7886653
No 148
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=72.78 E-value=2.2 Score=49.91 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=40.8
Q ss_pred CCceeEEecccCccch-HHHHHHHHHH-ccC---CCCccEEEE-E-eeEEccCCc--cccccCC---CCCChhhhHhhcC
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLSTA-LFG---KPAFRNLIC-N-GLVLAEDGK--KMSKKLK---NYPSPVEVINDYG 663 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~~-l~~---~~pfk~v~~-h-G~vld~~G~--KMSKS~G---N~v~P~~li~~yG 663 (1193)
+-+|+...|.||.... +.+-++.... .++ ..| .-++. | .++...+|. |||||.+ |.|...| .
T Consensus 137 ~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D-----~ 210 (333)
T PRK00927 137 YKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD-----D 210 (333)
T ss_pred cCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC-----C
Confidence 5689999999997532 2222222111 011 122 22332 1 556667776 9999999 7887654 4
Q ss_pred hhHHHHhHhh
Q 000999 664 ADALRLYLIN 673 (1193)
Q Consensus 664 aDalR~yL~~ 673 (1193)
+|.++=-+.+
T Consensus 211 ~~~I~~KI~~ 220 (333)
T PRK00927 211 PKTIAKKIKK 220 (333)
T ss_pred HHHHHHHHHh
Confidence 4555544443
No 149
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=72.11 E-value=8.9 Score=42.53 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=40.9
Q ss_pred EEeeEEccCCccccccCC------CCC----Ch----hhhHh--hcChhHHHHhHhhCCccccccccccHhHHHHHHHh
Q 000999 633 CNGLVLAEDGKKMSKKLK------NYP----SP----VEVIN--DYGADALRLYLINSPVVRAETLRFKKDGVFAVVKD 695 (1193)
Q Consensus 633 ~hG~vld~~G~KMSKS~G------N~v----~P----~~li~--~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~ 695 (1193)
..+++ +.+|+||||+.+ ..+ +| ...+. .|-++|++=|++..+. ...+..|+++.+....++
T Consensus 154 ~~~hl-n~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~-s~~~~~~~~~~l~~~nr~ 230 (238)
T cd00807 154 EFSRL-NLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGV-SKADSTIDWDKLEACVRK 230 (238)
T ss_pred EEEEE-CCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCC-CCCCcccCHHHHHHHHHH
Confidence 34554 789999999985 222 12 12233 4669999999987665 456789999888765443
No 150
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.61 E-value=54 Score=39.83 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCcccccccCCCCCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 16 EEKILEFWNSIDAFKTQLDRTRCQPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 16 E~~~~~~W~~~~~f~~~~~~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
+.-....|+....|... +. -..++-++--.-|+.+-+.|+||.+.-+|.-+++.-.+..|+.|.++--
T Consensus 88 k~~l~~i~~~~~~~g~~-~~-~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NY 155 (567)
T KOG1195|consen 88 KSVLPIIEEQREKYGKN-EL-GSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNY 155 (567)
T ss_pred HHHHHHHHHHhcccCcc-cc-ccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhh
Confidence 44455567666667654 21 2245567777889999999999999999999999999999999987643
No 151
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=68.63 E-value=76 Score=30.71 Aligned_cols=79 Identities=10% Similarity=0.166 Sum_probs=57.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCCh---HHHHHHHHHHHHHHHHHH
Q 000999 735 NVLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGE---DDCRIALSTLYNVLLTSC 811 (1193)
Q Consensus 735 ~~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~---~~~~~a~~tL~~vL~~l~ 811 (1193)
++.++-++..+..+...+..+++.++++.++..++++...++++|= .-++.+++.. ..|..-+.....++...+
T Consensus 32 ~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~---~~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l 108 (119)
T PF05746_consen 32 EEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYD---NVRILDEDEEIRKNNRLALLKAVRQVLKNGL 108 (119)
T ss_dssp SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHH---HS-STTSTTCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh---hccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999999999999999999999999988999883 3355554443 334455566667777777
Q ss_pred HhcCC
Q 000999 812 KVMAP 816 (1193)
Q Consensus 812 ~LLaP 816 (1193)
.+|.-
T Consensus 109 ~llgi 113 (119)
T PF05746_consen 109 DLLGI 113 (119)
T ss_dssp HHTT-
T ss_pred HHcCC
Confidence 77653
No 152
>PLN02486 aminoacyl-tRNA ligase
Probab=67.31 E-value=19 Score=42.99 Aligned_cols=89 Identities=16% Similarity=0.269 Sum_probs=50.0
Q ss_pred CCCcEEEEcCCCCCCC-ccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHH
Q 000999 38 CQPEYVFYDGPPFATG-LPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDK 116 (1193)
Q Consensus 38 ~~~~f~~~~gPP~~nG-~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~ 116 (1193)
.+++|.+|.|- -||| .+|+||.... ..+..++..-|..+....+ |. |....+ +.+ .
T Consensus 70 ~~~~~~vYtG~-~PSg~~lHlGHlv~~---~~~~~lQ~~~~~~~~I~ia-D~-----e~~~~~--~~~---------~-- 126 (383)
T PLN02486 70 KGEKFYLYTGR-GPSSEALHLGHLIPF---MFTKYLQDAFKVPLVIQLT-DD-----EKFLWK--NLS---------V-- 126 (383)
T ss_pred cCCCeEEEeCC-CCCCccccHHHHHHH---HHHHHHHHhCCCeEEEEec-CH-----HHHhhc--CCC---------H--
Confidence 45678899987 4578 5999996553 3333445555666665544 43 332222 221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccccCccccCChhHH
Q 000999 117 YNEACRSIVTRYVEEWEQIITRTGRWIDFRNDYKTMDLKFM 157 (1193)
Q Consensus 117 f~~~c~~~~~~~~~~~~~~~~~lG~~iD~~~~y~T~d~~y~ 157 (1193)
+++++++.++.. .+..+| +|.++.+.-.+-.+.
T Consensus 127 --e~i~~~~~en~~----~iiA~G--~dp~kt~I~s~~~~~ 159 (383)
T PLN02486 127 --EESQRLARENAK----DIIACG--FDVERTFIFSDFDYV 159 (383)
T ss_pred --HHHHHHHHHHHH----HHHHhC--CCCcceEEEeccHHH
Confidence 345555554444 445578 677665544454444
No 153
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.30 E-value=11 Score=44.88 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=51.1
Q ss_pred EeeccChHHHhhHHhhhHHHHHHHHHhcCHHHHHH----HHhCCcEEEceEEeeCCcEEEEEEec
Q 000999 930 LRAEPDFSVLGKRLGRSMGVVAKEVKAMSQEDILA----FEKSGEVTIATHCLQLADIKVVREFK 990 (1193)
Q Consensus 930 ~~~~~d~~~lg~rl~k~~~~v~~~l~~~~~~~~~~----~~~~g~~~~~g~~l~~~~v~i~~~~~ 990 (1193)
+.+.||.+.+|++++++.+.|...+..++++++.+ +.++|.+.+.-+.++...|.|.+..+
T Consensus 384 ~~i~~~kk~~g~~fk~~ak~v~~~l~~~s~~e~~~~~~~L~~~g~~~~~v~~l~k~~v~i~~~~k 448 (599)
T KOG2298|consen 384 AVIPPNKKELGCAFKKDAKGVNETLIFPSGKELIETLENLGDHGLLHMYVVNLSKLHVRIKRKTK 448 (599)
T ss_pred EEeccchhhcchhhhhcccchhHHhhcCCHHHHHHHHHHhhcCCcEEEEEEecccceeeeeeeee
Confidence 56789999999999999999999999999998865 45667766665788888888887654
No 154
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=62.70 E-value=6.2 Score=50.22 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=34.3
Q ss_pred CCceeEEecccCccch-HHHHHHHHHHccCCCCccEE-EEEeeEEccC-C-ccccccC-CCCCChhh
Q 000999 596 FPGQFIAEGLDQTRGW-FYTLMVLSTALFGKPAFRNL-ICNGLVLAED-G-KKMSKKL-KNYPSPVE 657 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r~W-f~~l~~~~~~l~~~~pfk~v-~~hG~vld~~-G-~KMSKS~-GN~v~P~~ 657 (1193)
+.+|+...|.||.... +.+-++- .++..| +.+ +.|.++...+ | .|||||. +|+|...|
T Consensus 174 l~adivpvG~DQ~qh~eLaRdia~---~~g~~~-kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADICQLGLDQRKVNMLAREYCD---LIGRKL-KPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHH---HhCCCC-CceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 5688999999997532 2222211 233222 223 3455555554 3 6999999 68997654
No 155
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=58.84 E-value=20 Score=43.54 Aligned_cols=59 Identities=17% Similarity=0.086 Sum_probs=41.9
Q ss_pred EEEEEeeEEccCCccccccCCCCCChhhhHh-hcChhHHHHhHhhCCccccccccccHhHH
Q 000999 630 NLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-DYGADALRLYLINSPVVRAETLRFKKDGV 689 (1193)
Q Consensus 630 ~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-~yGaDalR~yL~~~~~~~~~d~~Fs~~~v 689 (1193)
....++++++.+|+||||+.|. +...++.+ .|-++|++=||+..+....++--|+.+.+
T Consensus 226 ~f~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~el 285 (445)
T PRK12558 226 VFAHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEEL 285 (445)
T ss_pred eEEEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHH
Confidence 7888899999999999999875 45555554 58899999999764332222223565544
No 156
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=55.45 E-value=31 Score=42.25 Aligned_cols=44 Identities=32% Similarity=0.226 Sum_probs=33.0
Q ss_pred cEEEEEeeEEccCCccccccCCCCCChhhh-HhhcChhHHHHhHhh
Q 000999 629 RNLICNGLVLAEDGKKMSKKLKNYPSPVEV-INDYGADALRLYLIN 673 (1193)
Q Consensus 629 k~v~~hG~vld~~G~KMSKS~GN~v~P~~l-i~~yGaDalR~yL~~ 673 (1193)
-...-++++++.+|+|||||+| .+...+. ...|-..+|+-+++.
T Consensus 235 P~~~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~al 279 (472)
T COG0008 235 PVYAHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLAL 279 (472)
T ss_pred CcEEEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHH
Confidence 4788889999999999999999 5555442 345667777777753
No 157
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=53.67 E-value=27 Score=43.21 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=46.8
Q ss_pred EEeeEEccCCccccccC------CCCCC---------hhhhHh-hcChhHHHHhHhhCCccccccccccHhHHHHHHHhh
Q 000999 633 CNGLVLAEDGKKMSKKL------KNYPS---------PVEVIN-DYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDV 696 (1193)
Q Consensus 633 ~hG~vld~~G~KMSKS~------GN~v~---------P~~li~-~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~ 696 (1193)
.|-..++..|.||||++ .+.|+ ...+-+ .|-++|+|=|++..+. ...+..++++.+....++.
T Consensus 235 ~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~-s~~~~~i~~~~l~~~nR~~ 313 (523)
T PLN03233 235 HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGA-SRRVVNLDWAKFWAENKKE 313 (523)
T ss_pred eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCC-CCCCceecHHHHHHHHHHH
Confidence 55556778999999997 45553 333332 3779999999988766 3456788888887776665
Q ss_pred hhhH
Q 000999 697 FLPW 700 (1193)
Q Consensus 697 l~kl 700 (1193)
+++.
T Consensus 314 ld~~ 317 (523)
T PLN03233 314 IDKR 317 (523)
T ss_pred hccc
Confidence 5443
No 158
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=51.45 E-value=43 Score=37.35 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=43.6
Q ss_pred EEEEEeeEEccCCccccccCCC------CC----Chhh----hHh--hcChhHHHHhHhhCCccccccccccHhHHHHHH
Q 000999 630 NLICNGLVLAEDGKKMSKKLKN------YP----SPVE----VIN--DYGADALRLYLINSPVVRAETLRFKKDGVFAVV 693 (1193)
Q Consensus 630 ~v~~hG~vld~~G~KMSKS~GN------~v----~P~~----li~--~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~ 693 (1193)
...-++.+++ +|+||||+.+. .+ ||.. .+. .|-+++++-|++..+. ...+..++++.+....
T Consensus 153 ~~~H~pll~~-~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~-s~~~~~~~~~~l~~~~ 230 (240)
T cd09287 153 ETIHWGRLKI-EGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGV-KQTDATISWENLYAIN 230 (240)
T ss_pred cEEeeeeecC-CCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCC-CCCCCccCHHHHHHHH
Confidence 5567777776 68999999842 22 2221 222 4668999988876554 3356788888887665
Q ss_pred Hhhhh
Q 000999 694 KDVFL 698 (1193)
Q Consensus 694 ~~~l~ 698 (1193)
++.++
T Consensus 231 r~~l~ 235 (240)
T cd09287 231 RKLID 235 (240)
T ss_pred HHHhc
Confidence 55443
No 159
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=48.56 E-value=18 Score=42.29 Aligned_cols=41 Identities=34% Similarity=0.402 Sum_probs=26.2
Q ss_pred CcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 40 PEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
+++.+|.|. -|||.+|+||.. .+.+ +.++++. |++|.+..|
T Consensus 29 ~~~~v~~G~-~PTG~lHLG~~~-~~~~--~~~lq~~-g~~~~i~Ia 69 (329)
T PRK08560 29 EEPKAYIGF-EPSGKIHLGHLL-TMNK--LADLQKA-GFKVTVLLA 69 (329)
T ss_pred CCCEEEEcc-CCCCcchhhhhH-HHHH--HHHHHHC-CCeEEEEEc
Confidence 445667776 346899999965 3333 6666663 887655544
No 160
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=48.03 E-value=14 Score=41.89 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=24.4
Q ss_pred CCC-ccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 51 ATG-LPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 51 ~nG-~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
||| .+|+||.+. +. .+.|++++ |++|...-|=.
T Consensus 9 PTg~~lHLG~~~~-~~--~~~~lq~~-g~~~~ilI~D~ 42 (269)
T cd00805 9 PTAPSLHLGHLVP-LM--KLRDFQQA-GHEVIVLIGDA 42 (269)
T ss_pred CCCCcccHHHHHH-HH--HHHHHHHC-CCeEEEEECCC
Confidence 679 899999885 32 57777775 98887766643
No 161
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=47.76 E-value=51 Score=41.48 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=44.7
Q ss_pred EEEEEeeEEccCCccccccCCCC------CC----hh--hhH----hhcChhHHHHhHhhCCccccccccccHhHHHHHH
Q 000999 630 NLICNGLVLAEDGKKMSKKLKNY------PS----PV--EVI----NDYGADALRLYLINSPVVRAETLRFKKDGVFAVV 693 (1193)
Q Consensus 630 ~v~~hG~vld~~G~KMSKS~GN~------v~----P~--~li----~~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~ 693 (1193)
...-.+ .++.+|.||||+++.- |+ |. .+- ..|.++++|=|+...+. ...+..|+++.+....
T Consensus 275 ~~~h~~-rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gv-sk~~~~~d~~~L~~~n 352 (601)
T PTZ00402 275 IVEDFS-RLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGM-SKTVNFMEWSKLWYFN 352 (601)
T ss_pred eEEEEe-eEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCC-CCCCcccCHHHHHHHH
Confidence 555556 4788999999998842 11 11 111 35789999999987666 3457789988887655
Q ss_pred Hhhh
Q 000999 694 KDVF 697 (1193)
Q Consensus 694 ~~~l 697 (1193)
++.+
T Consensus 353 r~~l 356 (601)
T PTZ00402 353 TQIL 356 (601)
T ss_pred HHHH
Confidence 5444
No 162
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=47.10 E-value=17 Score=41.45 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=22.2
Q ss_pred CCC-ccchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 51 ATG-LPHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 51 ~nG-~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
||| .+|+||.+. + ..+.+++. .|+++.+..|
T Consensus 8 PTg~~lHlGh~~~-l--~~~~~lq~-~g~~~~~~I~ 39 (273)
T cd00395 8 PTADSLHIGHLIG-L--LTFRRFQH-AGHRPIFLIG 39 (273)
T ss_pred CCCCCccHHHHHH-H--HHHHHHHH-CCCCEEEEEe
Confidence 679 799999888 2 23445554 5899877665
No 163
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=44.91 E-value=40 Score=41.77 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=36.8
Q ss_pred EccCCccccccCCCC---------------CChhhhHh-hcChhHHHHhHhhCCccccccccccHhHHHHHHHh
Q 000999 638 LAEDGKKMSKKLKNY---------------PSPVEVIN-DYGADALRLYLINSPVVRAETLRFKKDGVFAVVKD 695 (1193)
Q Consensus 638 ld~~G~KMSKS~GN~---------------v~P~~li~-~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~ 695 (1193)
|+.+|.||||+++.. .+...+.+ .|-++|+|=|++..+.... +...+...+.+.++.
T Consensus 235 ln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~-~~~~e~~~l~~~~r~ 307 (522)
T TIGR00440 235 LNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQ-DNNIEVVRLESCIRE 307 (522)
T ss_pred ECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCC-CCceehhhHHHHHHH
Confidence 667999999999864 24444443 4779999999987655222 333444445544443
No 164
>PLN02627 glutamyl-tRNA synthetase
Probab=43.90 E-value=68 Score=39.90 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=46.6
Q ss_pred eeEEecccCccchHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHh-hcChhHHHHhHhhCC
Q 000999 599 QFIAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVIN-DYGADALRLYLINSP 675 (1193)
Q Consensus 599 d~~~~G~D~~r~Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~-~yGaDalR~yL~~~~ 675 (1193)
+-++-|.|.+-.-+.- +.+--++ |-.|+ ....+.++++.+|+||||+.|. +...++.+ .|-++|++=||+..+
T Consensus 251 THViRG~D~l~nTpkQ-i~ly~aL-g~~~P-~f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~LG 324 (535)
T PLN02627 251 THVIRAEEHLPNTLRQ-ALIYKAL-GFPMP-RFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPDAMVNYLALLG 324 (535)
T ss_pred cEEEechhhhcChHHH-HHHHHHc-CCCCC-eEEEccceeCCCCCccccccCC-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 3455566665542211 1122222 22333 7888899999999999999764 45666554 577999999987643
No 165
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=42.77 E-value=48 Score=41.28 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=41.8
Q ss_pred EccCCccccccCCC------CC---------ChhhhHh-hcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhh
Q 000999 638 LAEDGKKMSKKLKN------YP---------SPVEVIN-DYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFL 698 (1193)
Q Consensus 638 ld~~G~KMSKS~GN------~v---------~P~~li~-~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~ 698 (1193)
|+.+|.||||+++. .+ +...+.+ .|-++|+|=|++..+. ...+..++++.+....++.++
T Consensus 264 ln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~-s~~~~~i~~~~L~~~nRk~ld 339 (554)
T PRK05347 264 LNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGV-TKQDSVIDMSMLESCIREDLN 339 (554)
T ss_pred ECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCC-CCCCCeecHHHHHHHHHHHhc
Confidence 36799999999964 22 2334433 4779999999987665 345678888888776555443
No 166
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=39.80 E-value=25 Score=42.02 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=30.1
Q ss_pred cEEEEcCCCCCCC-ccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhH
Q 000999 41 EYVFYDGPPFATG-LPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 41 ~f~~~~gPP~~nG-~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
++.+|.|. -||| .||+||... + -.+.|+++ .|++|....| |.||+
T Consensus 30 ~~~vy~G~-dPTg~~lHlGh~v~-l--~~l~~lq~-~G~~~~ilig-d~ta~ 75 (377)
T TIGR00234 30 KIKLYVGF-DPTAPSLHLGHLVP-L--LKLRDFQQ-AGHEVIVLLG-DATAL 75 (377)
T ss_pred CCEEEEee-CCCCCCccHHHHHH-H--HHHHHHHH-CCCcEEEEEe-ccchh
Confidence 56778886 3568 899999885 2 22455555 6999887764 34443
No 167
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.22 E-value=18 Score=40.57 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=23.9
Q ss_pred cCCCCCcEEEEcCCCCCCCccchhHHHhhH
Q 000999 35 RTRCQPEYVFYDGPPFATGLPHYGHILAGT 64 (1193)
Q Consensus 35 ~~~~~~~f~~~~gPP~~nG~lH~GH~~~~~ 64 (1193)
..+.+++|++|.|-=--++.+|+||..-.+
T Consensus 79 ~~eq~kpFyLYTGRGpSS~smHlGHliPFi 108 (397)
T KOG2145|consen 79 AYEQGKPFYLYTGRGPSSESMHLGHLIPFI 108 (397)
T ss_pred HHHcCCceEEEeCCCCCccccccccchhHH
Confidence 345678899999987778999999986543
No 168
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.80 E-value=35 Score=40.05 Aligned_cols=57 Identities=26% Similarity=0.178 Sum_probs=37.2
Q ss_pred cCCceeEEecccCccchHHHHHHHHHHccCCC----CccEEEEEeeEEccCCccccccCCCCCChh
Q 000999 595 NFPGQFIAEGLDQTRGWFYTLMVLSTALFGKP----AFRNLICNGLVLAEDGKKMSKKLKNYPSPV 656 (1193)
Q Consensus 595 ~~Pad~~~~G~D~~r~Wf~~l~~~~~~l~~~~----pfk~v~~hG~vld~~G~KMSKS~GN~v~P~ 656 (1193)
.+-..|.+.|.||..+- +.|+.+-.+. .+--=++--+++...|.|+-||-||.||.+
T Consensus 225 ~~g~~~QlGGsDQwGNi-----taG~dlI~ki~~~~~~vfGlT~PLlTsstG~KlGKSaGnAvWLd 285 (467)
T KOG2623|consen 225 NYGCRFQLGGSDQWGNI-----TAGTDLIRKIMPIQAFVFGLTFPLLTSSTGAKLGKSAGNAVWLD 285 (467)
T ss_pred hcCeeEEeccccccccc-----chHHHHHHHhcccccceeeeeeeeEecCcchhhccCCCceEEec
Confidence 36678999999997541 1122211111 111124556788899999999999999864
No 169
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=33.96 E-value=4.1e+02 Score=25.70 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhhhccccCCCCh---HHHHHHHHHHHHHHHHHHH
Q 000999 736 VLDQWINSATQSLVHFVRQEMEGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGE---DDCRIALSTLYNVLLTSCK 812 (1193)
Q Consensus 736 ~~D~wils~l~~li~~v~~~~e~y~~~~a~~~l~~fi~~lsnwYi~~~r~rl~~~~~~---~~~~~a~~tL~~vL~~l~~ 812 (1193)
+..+-++..+..+.+.+..++.+.+++.++..+.++...++++|=+ -++.++++. ..|..-+..+..++..++.
T Consensus 36 ~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~~---v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~ 112 (122)
T smart00836 36 PEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYNK---CRVLGEENPELRAARLALLKAVRQVLANGLR 112 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHcc---CcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888888888999999999999999999878887732 234444322 2234445556666777777
Q ss_pred hcCCC
Q 000999 813 VMAPF 817 (1193)
Q Consensus 813 LLaPf 817 (1193)
+|..=
T Consensus 113 llgi~ 117 (122)
T smart00836 113 LLGIS 117 (122)
T ss_pred HcCCC
Confidence 76543
No 170
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=33.53 E-value=3.6e+02 Score=37.41 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=71.7
Q ss_pred CHHHHH-hhhhHHHHHHHHHHHhhCCCCCCceEE-EEEEeCCcChHHHHHHHHHHHHHHHHhhcCCCcCCCCCCCCccee
Q 000999 1017 DESLFE-AGVAREVVNRIQKLRKKIALEPTDVVE-VYFESLDEDKSVSQQVLNSQEHYIRDAIGSPLLPSSTLPSHAVII 1094 (1193)
Q Consensus 1017 ~~eL~~-eGlaREvi~rIQ~lRK~~~L~v~D~I~-v~~~~~~~~~~~l~~~i~~~~~~I~~~l~~~~~~~~~~~~~~~~~ 1094 (1193)
|+++++ ..++|++|+.+-.+|.++++.+..++. +.+...++ ...+.++...++|++++...-.. +
T Consensus 951 d~~~e~~~~~~~~ii~~~R~~R~~~~i~~r~pl~~~~v~~~~~---~~~~~~~~~~~~i~~e~nv~~v~----------~ 1017 (1205)
T PTZ00427 951 DYEIIELIEKMKDVILLGRVLRERRKVASKKPLKSITILHPNE---SYFKNFDQISNYIKEELNVLNVE----------C 1017 (1205)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccceeEEecCcH---HHHHHHHHHHHHHHHhhCcceEE----------E
Confidence 555554 569999999999999999999999997 44543332 46678899999999988542211 0
Q ss_pred cceeeeeecCeEEEEEEeecccccChHHHHHHhcCCchhHHHHHHHHhhccccccchhhhcCCceEEE
Q 000999 1095 GEESFDGISNLSFKISLTRPALVFNSDSILALYSGNTMFLQGLQMYLLSRDHSNLKSEFQLGNGKIMV 1162 (1193)
Q Consensus 1095 ~~~e~~~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~ 1162 (1193)
. + + ...+. ..+..|..+|=..+ |+. +..++..+.+.+...++..... |++++
T Consensus 1018 ~-~---~--~~~~~-----~~~~pn~~~lG~~~-g~~--~~~v~~~i~~~~~~~~~~~~~~--g~~~~ 1069 (1205)
T PTZ00427 1018 S-N---D--TSCLD-----FSAIPNYKTLGVKL-GYN--LKKVQNKIKNMDSESIKLYQQE--GKITL 1069 (1205)
T ss_pred E-e---c--CceEE-----EEEEechhHhChhh-hhh--HHHHHHHHHcCCHHHHHHHHhC--CcEEE
Confidence 0 0 0 11111 22333333222222 233 5667888888888777654443 35555
No 171
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=32.80 E-value=65 Score=40.39 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=48.6
Q ss_pred cEEEEEeeEEccCCccccccCC------CCC----Chhh----hHh--hcChhHHHHhHhhCCccccccccccHhHHHHH
Q 000999 629 RNLICNGLVLAEDGKKMSKKLK------NYP----SPVE----VIN--DYGADALRLYLINSPVVRAETLRFKKDGVFAV 692 (1193)
Q Consensus 629 k~v~~hG~vld~~G~KMSKS~G------N~v----~P~~----li~--~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~ 692 (1193)
.....++++++.+|+|+|||++ +.+ ||.- -+. .|-++|+|=|++..+. ...+..++++.+...
T Consensus 314 P~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~-s~~~~~i~~~~l~~~ 392 (560)
T TIGR00463 314 PEFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGV-KRNDVNLSWKNIYAF 392 (560)
T ss_pred CeEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCC-CCCCceeeHHHHHHH
Confidence 4888999999999999999873 122 2322 122 4779999999988766 345778888888776
Q ss_pred HHhhhh
Q 000999 693 VKDVFL 698 (1193)
Q Consensus 693 ~~~~l~ 698 (1193)
.++.+.
T Consensus 393 nr~~id 398 (560)
T TIGR00463 393 NKKIID 398 (560)
T ss_pred HHHHhC
Confidence 555443
No 172
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=32.74 E-value=36 Score=41.06 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=54.1
Q ss_pred EEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHHHHHHHHHHcCCCCcchhhhcCHHHHHHHHHH
Q 000999 44 FYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLPVENEIDKTLGIKRRDDVFQMGIDKYNEACRS 123 (1193)
Q Consensus 44 ~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlpie~~v~k~lg~~~~~~~~~~g~~~f~~~c~~ 123 (1193)
++.|- -|||.||+||.++-+- - ..+.+...|+++.+.. -|-|-+-. . ...+ +.++
T Consensus 5 vlSGi-qPTG~lHLGNylGaik-~-~v~lq~q~~~~~~~~I-ADlHAlT~--------~-~dp~------------~lr~ 59 (431)
T PRK12284 5 VLTGI-TTTGTPHLGNYAGAIR-P-AIAASRQPGVESFYFL-ADYHALIK--------C-DDPA------------RIQR 59 (431)
T ss_pred EEEEe-cCCCcchHHHHHHHHH-H-HHHHHHhCCCcEEEEe-echhhccC--------C-CCHH------------HHHH
Confidence 33443 3789999999665443 2 3444545688865443 34444320 0 1111 1222
Q ss_pred HHHHHHHHHHHHHHHhCCcccccCc--cccCC-hhHHHHHHHHHHHHHHcCceeee
Q 000999 124 IVTRYVEEWEQIITRTGRWIDFRND--YKTMD-LKFMESVWWVFAQLYEKGLVYKG 176 (1193)
Q Consensus 124 ~~~~~~~~~~~~~~~lG~~iD~~~~--y~T~d-~~y~~~v~~~f~~L~~kGliy~~ 176 (1193)
+..++...+...| +|.++. |.-.+ |.+. --+|+|..+--.|.+-|-
T Consensus 60 ----~~~e~aa~~LA~G--lDPek~~if~QSdvpeh~-EL~wiL~~it~~g~L~Rm 108 (431)
T PRK12284 60 ----STLEIAATWLAAG--LDPERVTFYRQSDIPEIP-ELTWLLTCVAGKGLLNRA 108 (431)
T ss_pred ----HHHHHHHHHHHhC--CCccceEEEECCcchhHH-HHHHHHHhhhhHHHHHhh
Confidence 3334566677789 777653 33333 5544 447777767666665443
No 173
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=32.36 E-value=47 Score=41.48 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=40.1
Q ss_pred EEEeeccChHHHhhHHhhhHHHHHHHHHhcCHHHHHHHHhCCcEEEceEEeeCCcEEEEEEec
Q 000999 928 ASLRAEPDFSVLGKRLGRSMGVVAKEVKAMSQEDILAFEKSGEVTIATHCLQLADIKVVREFK 990 (1193)
Q Consensus 928 ~~~~~~~d~~~lg~rl~k~~~~v~~~l~~~~~~~~~~~~~~g~~~~~g~~l~~~~v~i~~~~~ 990 (1193)
-.+.++||.+.+|++++++.+.|.+ +++++++.++.+.-. -..++|+.++|.|....+
T Consensus 349 ~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 406 (551)
T TIGR00389 349 TKWEIEPNKKKFGPKFRKDAKKIES---NLSEDDLEEREEELD--KNEVELDKDLVEIEMVTE 406 (551)
T ss_pred EEEEEecchhhhhhhhHhHHHHHHH---hhcHHHHHHHHhhhh--ccceecchhhhhheeeee
Confidence 3467889999999999999999999 555555555442210 015677788877765443
No 174
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=31.90 E-value=65 Score=37.17 Aligned_cols=41 Identities=24% Similarity=0.071 Sum_probs=29.6
Q ss_pred EEEEEeeEEccCCccccccCCCCCChhhhHhhcChhHHHHhHhhC
Q 000999 630 NLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYGADALRLYLINS 674 (1193)
Q Consensus 630 ~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yGaDalR~yL~~~ 674 (1193)
....++++++.+|+||||+.|.. ...+ +.|-+. +..|++..
T Consensus 222 ~y~H~pll~~~~g~kLSKr~~~~-~i~~--~g~~p~-l~~~l~~l 262 (299)
T PRK05710 222 RYLHLPLVLNADGQKLSKQNGAP-ALDA--AGPLPV-LAAALRFL 262 (299)
T ss_pred eEEEeecccCCCCCcccccCCcc-chhh--cCcCHH-HHHHHHHc
Confidence 67777899999999999997654 2333 566666 66666543
No 175
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=31.82 E-value=35 Score=42.61 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=52.1
Q ss_pred HHHHHHHHHCCCeeeeccccccCCcccCCCCCeEEeeeCccccccHHHHHHHHHhh--cCCccccchhhhHhHHhhhh
Q 000999 417 KDIIEALKAKGRLVKTGSLTHSYPFCWRSDTPLIYRAVPSWFVRVETLKEKLLDNN--KQTYWVPDYVKEKRFHNWLE 492 (1193)
Q Consensus 417 ~~Ii~~L~~~g~l~~~~~~~h~yp~c~R~~~pli~~~~~qWFi~~~~~k~~ll~~~--~~~~~~P~~~~~~r~~~wl~ 492 (1193)
..||+.|++.|.- ..-.+.-|+.||=. +......++||-++.++-+.+.+.+ +++..+...++-..+..+|+
T Consensus 159 ~kLIe~L~~iGY~---~~nL~gAPYDWRls-~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~ 232 (642)
T PLN02517 159 AVLIANLARIGYE---EKNMYMAAYDWRLS-FQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMK 232 (642)
T ss_pred HHHHHHHHHcCCC---CCceeecccccccC-ccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHH
Confidence 7899999999975 34556789999944 2223345999999999999887765 57778887776544444444
No 176
>PLN02859 glutamine-tRNA ligase
Probab=31.07 E-value=66 Score=41.68 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=39.1
Q ss_pred EEEEeeEEccCCccccccCCCCC---------------ChhhhHh-hcChhHHHHhHhhCCccccccc-cccHhHHHH
Q 000999 631 LICNGLVLAEDGKKMSKKLKNYP---------------SPVEVIN-DYGADALRLYLINSPVVRAETL-RFKKDGVFA 691 (1193)
Q Consensus 631 v~~hG~vld~~G~KMSKS~GN~v---------------~P~~li~-~yGaDalR~yL~~~~~~~~~d~-~Fs~~~v~~ 691 (1193)
..-.| .|+.+|.||||+++... +...+.+ .|-+.|+|=|++..+.... +. .|+++.+..
T Consensus 487 ~~~f~-rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~-~~e~i~~~~Le~ 562 (788)
T PLN02859 487 VWEYS-RLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRS-DNSLIRMDRLEH 562 (788)
T ss_pred EEeee-eECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCC-CCceecHHHHHh
Confidence 34444 67789999999997642 2223333 4779999999987665333 43 577766643
No 177
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=30.47 E-value=47 Score=41.43 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=43.7
Q ss_pred EccCCccccccCCCC---------------CChhhhHh-hcChhHHHHhHhhCCccccccccccHhHHHHHHHhhhhhH
Q 000999 638 LAEDGKKMSKKLKNY---------------PSPVEVIN-DYGADALRLYLINSPVVRAETLRFKKDGVFAVVKDVFLPW 700 (1193)
Q Consensus 638 ld~~G~KMSKS~GN~---------------v~P~~li~-~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~~~~l~kl 700 (1193)
|+.+|.|||||+... .+...+.+ .|-++|+|=|++..+. ...|..++++.+....++.+++.
T Consensus 280 ln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~-sk~~~~i~~~~Le~~nR~~ld~~ 357 (574)
T PTZ00437 280 LNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGI-TRSMNVIQISMLENTLREDLDER 357 (574)
T ss_pred ecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCC-CccceEeeHHHHHHHHHHHhccc
Confidence 667999999999874 22223322 4789999999987766 34567888888877666655443
No 178
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.31 E-value=5.2e+02 Score=25.80 Aligned_cols=100 Identities=19% Similarity=0.321 Sum_probs=53.8
Q ss_pred eeEEeCCChhhHHHHHhHHHHHHHHhhcCcceeecCCcceEEEEeeccChHHHhhHHhhhHHHHHHHHHhcCHHHHHHHH
Q 000999 887 EMIVVHPDADFLDDIAGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPDFSVLGKRLGRSMGVVAKEVKAMSQEDILAFE 966 (1193)
Q Consensus 887 ~~vv~~~~~~~~~~l~~~l~~~i~~elNv~~v~~~~~~~~~~~~~~~~d~~~lg~rl~k~~~~v~~~l~~~~~~~~~~~~ 966 (1193)
.++|.+.+++.++.+.. .+.. .+..+.+..+-...|.++. .|+.+.|+|-.++
T Consensus 38 r~vV~t~N~~K~~aind----vlrr-f~l~Eaeml~~~T~~ADlT--------------rmPA~tKalmald-------- 90 (156)
T COG4019 38 RIVVATNNQKKFKAIND----VLRR-FCLAEAEMLDIDTRFADLT--------------RMPALTKALMALD-------- 90 (156)
T ss_pred eEEEecCCHHHHHHHHH----HHHH-hccchHHHhcCccchhhcc--------------cChHHHHHHHhcc--------
Confidence 45666777766655443 3333 3444443332222232221 2566777765443
Q ss_pred hCCcEEEceEEeeCCcEEEEEEecCCCCCcccceeeccCCCEEEEEecC-------------CCHHHHHhhhhHHHHHHH
Q 000999 967 KSGEVTIATHCLQLADIKVVREFKRPDGVTEKEIDAAGDGDVLVILDLR-------------PDESLFEAGVAREVVNRI 1033 (1193)
Q Consensus 967 ~~g~~~~~g~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~V~lD~~-------------l~~eL~~eGlaREvi~rI 1033 (1193)
++..|+-|.+.-- .+-+.|..+|++|.+ +.+.-.+|.+-||++-..
T Consensus 91 -----------is~ADlvIARGRL----------GvPGSGsmlVimD~rgRlLtAalSPphViH~m~v~Eai~~E~~eAL 149 (156)
T COG4019 91 -----------ISKADLVIARGRL----------GVPGSGSMLVIMDERGRLLTAALSPPHVIHKMDVEEAIKKELIEAL 149 (156)
T ss_pred -----------ccCCcEEEeeccc----------cCCCCCcEEEEEccccceeeecCCCchhhhHhhHHHHHHHHHHHHH
Confidence 4556666655331 112356688888865 345567778888877654
Q ss_pred H
Q 000999 1034 Q 1034 (1193)
Q Consensus 1034 Q 1034 (1193)
.
T Consensus 150 ~ 150 (156)
T COG4019 150 S 150 (156)
T ss_pred H
Confidence 4
No 179
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=29.76 E-value=39 Score=39.59 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=21.3
Q ss_pred CCCCccchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 50 FATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 50 ~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
-|||.||+||.++.+-+ +.+++. +++|.+..+
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia 40 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQD--EYECFFCIA 40 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHHh--cCCeEEEEe
Confidence 36799999998876543 555554 366655553
No 180
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=29.59 E-value=39 Score=39.56 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 42 YVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 42 f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
+.+|.|- -|||.||+||.++.+. .++....|++|.+..+=.
T Consensus 3 ~~v~~G~-~PTG~~HlG~~l~~~~----~~~~~q~~~~~~i~IaD~ 43 (328)
T TIGR00233 3 FRVLTGI-QPSGKMHLGHYLGAIQ----TKWLQQFGVELFICIADL 43 (328)
T ss_pred CEEEEee-CCCcHhHHHHHHHHHH----HHHHHhCCCCEEEEeecc
Confidence 3455554 4579999999887543 233335688876665433
No 181
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=29.16 E-value=41 Score=38.51 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccc
Q 000999 39 QPEYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWD 87 (1193)
Q Consensus 39 ~~~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D 87 (1193)
++++.+|.|. -|||.||+||..... .+.++++ .|++|....|=+
T Consensus 3 ~~~~~~y~G~-~PTg~lHlG~l~~~~---~~~~lq~-~g~~~~i~iaD~ 46 (292)
T PF00579_consen 3 NKPFRVYTGI-DPTGDLHLGHLVPIM---KLIWLQK-AGFKVIILIADL 46 (292)
T ss_dssp HSSEEEEEEE-ESSSS-BHHHHHHHH---HHHHHHH-TTSEEEEEEEHH
T ss_pred CCCcEEEEeE-CCCCcccchHHHHHH---HHHHHHh-cCCccceEecch
Confidence 3456777776 246889999887642 2344444 799988877643
No 182
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=28.72 E-value=1.4e+02 Score=40.54 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=49.6
Q ss_pred CHHH-HHhhhhHHHHHHHHHHHhhCCCCCCceEEEEEEeCCcChHHHHHHHHHHHHHHHHhhcC
Q 000999 1017 DESL-FEAGVAREVVNRIQKLRKKIALEPTDVVEVYFESLDEDKSVSQQVLNSQEHYIRDAIGS 1079 (1193)
Q Consensus 1017 ~~eL-~~eGlaREvi~rIQ~lRK~~~L~v~D~I~v~~~~~~~~~~~l~~~i~~~~~~I~~~l~~ 1079 (1193)
++++ ....+++++|+.|-.+|.+.++.+..++.+.+.+.++ ...+.++.+.++|+..++.
T Consensus 827 d~~~e~~~~~~~~ii~~iR~~r~~~~i~~~~~l~~~i~~~~~---~~~~~~~~~~~~i~~l~~~ 887 (995)
T PTZ00419 827 NEALDEEMKIIMSIVKSIRSLIATLGIPNKTKPDCYVTAKDA---ELIELIESAENLISTLAKI 887 (995)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEeCCH---HHHHHHHHHHHHHHHhcCC
Confidence 4554 5678999999999999999999999999988765442 4678899999999987765
No 183
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.49 E-value=1.2e+02 Score=35.22 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=29.5
Q ss_pred cEEEEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhHH
Q 000999 41 EYVFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGLP 92 (1193)
Q Consensus 41 ~f~~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGlp 92 (1193)
++.++.|- -|||.||+||-++.+ -.+++...++.=.+.+=.|-|.+-
T Consensus 5 ~~~vlSG~-~PSG~lHLGny~ga~----~~~v~~q~~~~~~f~~IaDlha~t 51 (314)
T COG0180 5 KFRVLSGI-QPSGKLHLGNYLGAI----RNWVLLQEEYYECFFFIADLHAIT 51 (314)
T ss_pred CceEEecC-CCCCCcchhHhHHHH----HHHHHHhcccCceEEEEecHHHhh
Confidence 35556665 468999999998764 345666666523344445666553
No 184
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.02 E-value=3.7e+02 Score=32.29 Aligned_cols=142 Identities=16% Similarity=0.246 Sum_probs=79.8
Q ss_pred EEEEEeeEEccCCccccccCCCCCChhhhHhh-----------c-------------ChhH-----HHHhHhhCCccccc
Q 000999 630 NLICNGLVLAEDGKKMSKKLKNYPSPVEVIND-----------Y-------------GADA-----LRLYLINSPVVRAE 680 (1193)
Q Consensus 630 ~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~-----------y-------------GaDa-----lR~yL~~~~~~~~~ 680 (1193)
.-+--|+||.+||+|+-+.-|.+|-..|++++ - -+++ +.|.=++.. +-.
T Consensus 433 ~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hn--R~~ 510 (656)
T KOG4426|consen 433 EHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHN--RIT 510 (656)
T ss_pred eeeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccc--ccc
Confidence 34567999999999999999999999999863 0 1111 223222221 345
Q ss_pred cccccHhHHHHHHHhhhhhHHHHHHHHH---HHHHHhhhhcCCCCCCch-hhhhh--cCCchhHHH-HHHHHHHHHHHHH
Q 000999 681 TLRFKKDGVFAVVKDVFLPWYNAYRFLV---QNAKRLEIEGGAPFIPLD-LATLQ--KSSNVLDQW-INSATQSLVHFVR 753 (1193)
Q Consensus 681 d~~Fs~~~v~~~~~~~l~kl~N~~~f~~---~~~~~~~~~~~~~~~p~~-~~~~~--~~~~~~D~w-ils~l~~li~~v~ 753 (1193)
|.-||-+.+.+- --|+.-|++ .++-.+.+..+.++.--. ..... -.+.-.+.| +-..|-++.+.+.
T Consensus 511 dY~FSFDkML~D-------rGnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~ 583 (656)
T KOG4426|consen 511 DYIFSFDKMLED-------RGNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVE 583 (656)
T ss_pred ceeeeHHHHhhc-------cCcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHH
Confidence 666665544321 122222222 222223333332221000 00000 012233445 4445667777888
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHH
Q 000999 754 QEMEGYRLYTVVPYLLKFLDNLTNIYV 780 (1193)
Q Consensus 754 ~~~e~y~~~~a~~~l~~fi~~lsnwYi 780 (1193)
++.++.-+|.....++++...|+.+|=
T Consensus 584 ~~~~~L~lh~lC~y~y~l~t~Ft~FY~ 610 (656)
T KOG4426|consen 584 KALDSLFLHVLCDYLYELATLFTEFYD 610 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888899999999998877888884
No 185
>PLN02886 aminoacyl-tRNA ligase
Probab=27.52 E-value=43 Score=40.01 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=25.2
Q ss_pred EEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceecccchhhH
Q 000999 44 FYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 44 ~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G~D~hGl 91 (1193)
++.|. -|||.+|+||.++.+- =+.+++. |+++. .+=-|-|-+
T Consensus 49 v~sGi-qPSG~lHLGnylGai~--~~v~lQ~--~~~~~-~~IADlHAl 90 (389)
T PLN02886 49 VVSGV-QPTGSIHLGNYLGAIK--NWVALQE--TYDTF-FCVVDLHAI 90 (389)
T ss_pred EEEEE-CCCCccHHHHHHHHHH--HHHHHhc--cCCEE-EEEecHHHh
Confidence 55655 3569999999776542 2444543 77764 333455544
No 186
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=27.52 E-value=51 Score=39.81 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=27.9
Q ss_pred CcEEEEcCCCCCCC-ccchhHHHhhHHHHHHHHHHHHcCCccceecc
Q 000999 40 PEYVFYDGPPFATG-LPHYGHILAGTIKDIVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 40 ~~f~~~~gPP~~nG-~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~G 85 (1193)
+++.+|.|. -||| .||+||.+. -..+.+++ ..|+++.+..|
T Consensus 32 ~~~~vy~G~-dPTg~slHlGhlv~---l~~l~~lQ-~~G~~~~~lig 73 (408)
T PRK05912 32 EPLRIYLGF-DPTAPSLHLGHLVP---LLKLRRFQ-DAGHKPIALIG 73 (408)
T ss_pred CCCEEEEee-cCCCCCccHHhHHH---HHHHHHHH-HCCCcEEEEEc
Confidence 456788887 3468 599999884 23445555 46998877765
No 187
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=27.41 E-value=46 Score=37.87 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEEeeEEccCCccccccCCC
Q 000999 630 NLICNGLVLAEDGKKMSKKLKN 651 (1193)
Q Consensus 630 ~v~~hG~vld~~G~KMSKS~GN 651 (1193)
....++++++.+|+|+||+.|-
T Consensus 215 ~y~H~pll~~~~g~kLSKR~~~ 236 (272)
T TIGR03838 215 RYLHLPLVVNADGEKLSKQNGA 236 (272)
T ss_pred eEEechhhhCCCCCeeeccCCc
Confidence 6777789999999999999764
No 188
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=27.23 E-value=1.1e+02 Score=35.60 Aligned_cols=72 Identities=28% Similarity=0.289 Sum_probs=40.1
Q ss_pred ceeEEecccCccc-hHHHHHHHHHHccCCCCccEEEEEeeEEccCCccccccCCCCCChhhhHhhcC--hhHHHHhHhh
Q 000999 598 GQFIAEGLDQTRG-WFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKKLKNYPSPVEVINDYG--ADALRLYLIN 673 (1193)
Q Consensus 598 ad~~~~G~D~~r~-Wf~~l~~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN~v~P~~li~~yG--aDalR~yL~~ 673 (1193)
..-++-|.|.+.. ..+.++.- +| +-.| .....|.++++.+|+|+||+.+..---...+...| +.++-=||+.
T Consensus 200 ITHViRG~D~l~~t~~Q~~L~~--~L-g~~~-P~~~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~ 274 (314)
T PF00749_consen 200 ITHVIRGEDLLSSTPRQILLYE--AL-GWPP-PPYAHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLAR 274 (314)
T ss_dssp -SEEEEEGGGTTCHHHHHHHHH--HC-TSSS--EEEEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHH
T ss_pred cCeEEEccccccccHHHHHHHH--Hh-CCCC-cceEeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHH
Confidence 4567778887654 23333322 22 2232 35667788999999999999886641122233333 4444445544
No 189
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=26.95 E-value=47 Score=39.70 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred CCCccchhHHHhhHHHHHHHHHHH-HcCCccceecccchhhH
Q 000999 51 ATGLPHYGHILAGTIKDIVTRYQS-MMGFHVTRRFGWDCHGL 91 (1193)
Q Consensus 51 ~nG~lH~GH~~~~~ikDi~~Ry~r-m~G~~V~~~~G~D~hGl 91 (1193)
|||.||+||.++ +++ .|.. ..|+++. .+=-|-|-+
T Consensus 11 PSG~~HLGnylG-~ik----~wv~lq~~~~~~-~~IADlHAl 46 (398)
T PRK12283 11 PTGRLHLGHYHG-VLK----NWVKLQHEYECF-FFVADWHAL 46 (398)
T ss_pred CCCcchHHHHHH-HHH----HHHHHhcCCcEE-EEeecHHHH
Confidence 689999999998 334 3333 3577654 333454443
No 190
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=26.78 E-value=54 Score=38.46 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=20.9
Q ss_pred EEcCCCCCCCccchhHHHhhHHHHHHHHHHHHcCCccceec
Q 000999 44 FYDGPPFATGLPHYGHILAGTIKDIVTRYQSMMGFHVTRRF 84 (1193)
Q Consensus 44 ~~~gPP~~nG~lH~GH~~~~~ikDi~~Ry~rm~G~~V~~~~ 84 (1193)
++.|- -|||.||+||.++-+-. ..+.+...|.++.+.-
T Consensus 6 v~sGi-qPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~I 43 (332)
T PRK12556 6 MLTGI-KPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFI 43 (332)
T ss_pred EEEEE-CCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEE
Confidence 34443 35799999997663332 2333444465554443
No 191
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=26.55 E-value=1.4e+02 Score=39.83 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=49.3
Q ss_pred CHHH-HHhhhhHHHHHHHHHHHhhCCCCCCceEEEEEEeCCcChHHHHHHHHHHHHHHHHhhcC
Q 000999 1017 DESL-FEAGVAREVVNRIQKLRKKIALEPTDVVEVYFESLDEDKSVSQQVLNSQEHYIRDAIGS 1079 (1193)
Q Consensus 1017 ~~eL-~~eGlaREvi~rIQ~lRK~~~L~v~D~I~v~~~~~~~~~~~l~~~i~~~~~~I~~~l~~ 1079 (1193)
++++ .+..+++++|+.|-++|++.++.+..++.+.+...++ ...+.++++.++|++.++.
T Consensus 719 d~~~e~~~~~l~~ii~~iR~~r~~~~i~~~~~l~~~i~~~~~---~~~~~l~~~~~~I~~l~~v 779 (861)
T TIGR00422 719 DEEAEKAFELLKEIIVSIRNLKAESNIPPNAPLKVLLIYTEA---ETAERLKLNAVDIKGAINF 779 (861)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEEeCCH---HHHHHHHHHHHHHhhhcCC
Confidence 4445 3568999999999999999999999999998865442 4568899999999987765
No 192
>PLN02886 aminoacyl-tRNA ligase
Probab=26.53 E-value=61 Score=38.75 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=11.9
Q ss_pred CCceeEEecccCcc
Q 000999 596 FPGQFIAEGLDQTR 609 (1193)
Q Consensus 596 ~Pad~~~~G~D~~r 609 (1193)
|-+|+..-|.||..
T Consensus 183 ~~a~~VPVG~DQ~q 196 (389)
T PLN02886 183 YQADLVPVGEDQKQ 196 (389)
T ss_pred cCCCeEEEccchHH
Confidence 56889999999974
No 193
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=26.01 E-value=47 Score=39.68 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCCCCCccchhHHHhhHHHH-HHHHHHHHcCCccceecc
Q 000999 39 QPEYVFYDGPPFATGLPHYGHILAGTIKD-IVTRYQSMMGFHVTRRFG 85 (1193)
Q Consensus 39 ~~~f~~~~gPP~~nG~lH~GH~~~~~ikD-i~~Ry~rm~G~~V~~~~G 85 (1193)
++++.+|.|. =|||.||+||. +++= -+..++ -.|++|.+..|
T Consensus 64 ~~~~~v~~G~-~PTG~lHLG~g---~i~~~~~~~lq-~~G~~v~~~Ia 106 (383)
T PTZ00126 64 KERPICYDGF-EPSGRMHIAQG---ILKAINVNKLT-KAGCVFVFWVA 106 (383)
T ss_pred CCCCEEEEEE-CCCCcccccch---HhHhHHHHHHH-hCCCeEEEEEc
Confidence 3556677776 35689999993 2221 122233 33888766654
No 194
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=24.42 E-value=2e+02 Score=38.46 Aligned_cols=60 Identities=20% Similarity=0.367 Sum_probs=48.3
Q ss_pred CHHHH-HhhhhHHHHHHHHHHHhhCCCCCCceEEEEEEeCCcChHHHHHHHHHHHHHHHHhhcC
Q 000999 1017 DESLF-EAGVAREVVNRIQKLRKKIALEPTDVVEVYFESLDEDKSVSQQVLNSQEHYIRDAIGS 1079 (1193)
Q Consensus 1017 ~~eL~-~eGlaREvi~rIQ~lRK~~~L~v~D~I~v~~~~~~~~~~~l~~~i~~~~~~I~~~l~~ 1079 (1193)
++++. +..+++++++.|-++|++.++.+..++.+++...++ ...+.++.+.++|+...+.
T Consensus 713 ~~~~~~~~~~~~~ii~~ir~~r~~~~i~~~~~~~~~i~~~~~---~~~~~l~~~~~~i~~l~~~ 773 (874)
T PRK05729 713 DEAAEAEFEWLKELITAIRNIRAEMNIPPSKKLPLLLKGADA---EDRARLEANEAYIKRLARL 773 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeEEEEeCCH---HHHHHHHHHHHHHHHHhCc
Confidence 34443 356899999999999999999999999998875443 5678889999999987654
No 195
>PLN02907 glutamate-tRNA ligase
Probab=22.86 E-value=2.2e+02 Score=37.11 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=44.6
Q ss_pred EEEEEeeEEccCCccccccC------CCCCC----hh-----hhHh-hcChhHHHHhHhhCCccccccccccHhHHHHHH
Q 000999 630 NLICNGLVLAEDGKKMSKKL------KNYPS----PV-----EVIN-DYGADALRLYLINSPVVRAETLRFKKDGVFAVV 693 (1193)
Q Consensus 630 ~v~~hG~vld~~G~KMSKS~------GN~v~----P~-----~li~-~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~ 693 (1193)
.+...|+ ++.+|.||||++ .++++ |. .+-+ .|-++++|=|+...+.. ..+..|+++.+....
T Consensus 435 ~~~~f~~-l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s-~~~~~~~~~~l~~~n 512 (722)
T PLN02907 435 HIWEFSR-LNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGAS-KNLNLMEWDKLWTIN 512 (722)
T ss_pred eeEEEEE-EcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCC-cCCccccHHHHHHHH
Confidence 5566665 567999999999 23442 22 2222 37899999999877663 456788888877654
Q ss_pred Hhhhh
Q 000999 694 KDVFL 698 (1193)
Q Consensus 694 ~~~l~ 698 (1193)
++.++
T Consensus 513 r~~id 517 (722)
T PLN02907 513 KKIID 517 (722)
T ss_pred HHHhc
Confidence 44443
No 196
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=20.24 E-value=2.7e+02 Score=36.55 Aligned_cols=71 Identities=13% Similarity=-0.005 Sum_probs=47.0
Q ss_pred EEEEEeeEEccCCccccccCC------CCC----Ch-----hhhHh-hcChhHHHHhHhhCCccccccccccHhHHHHHH
Q 000999 630 NLICNGLVLAEDGKKMSKKLK------NYP----SP-----VEVIN-DYGADALRLYLINSPVVRAETLRFKKDGVFAVV 693 (1193)
Q Consensus 630 ~v~~hG~vld~~G~KMSKS~G------N~v----~P-----~~li~-~yGaDalR~yL~~~~~~~~~d~~Fs~~~v~~~~ 693 (1193)
.++.-|++- ..|.||||++. +.+ || ..+.+ .|-++|+|-|++..+.. ..|..++++.+....
T Consensus 260 ~~~~f~rl~-l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s-~~~~~i~~~~L~~~~ 337 (771)
T PRK14703 260 RQYEFARLA-LGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVA-KTNSTVDIGVLEFAI 337 (771)
T ss_pred ceeEEEEec-cCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCC-ccCceecHHHHHHHH
Confidence 555666655 47899999982 233 22 22222 47799999999876663 356788888888776
Q ss_pred HhhhhhHHH
Q 000999 694 KDVFLPWYN 702 (1193)
Q Consensus 694 ~~~l~kl~N 702 (1193)
++.+++.-+
T Consensus 338 R~~ld~~a~ 346 (771)
T PRK14703 338 RDDLNRRAP 346 (771)
T ss_pred HHHhccCCC
Confidence 666654433
No 197
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=20.18 E-value=2.3e+02 Score=38.33 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=46.8
Q ss_pred CHHH-HHhhhhHHHHHHHHHHHhhCCCCCCceEEEEEEeCCcChHHHHHHHHHHHHHHHHhhcCC
Q 000999 1017 DESL-FEAGVAREVVNRIQKLRKKIALEPTDVVEVYFESLDEDKSVSQQVLNSQEHYIRDAIGSP 1080 (1193)
Q Consensus 1017 ~~eL-~~eGlaREvi~rIQ~lRK~~~L~v~D~I~v~~~~~~~~~~~l~~~i~~~~~~I~~~l~~~ 1080 (1193)
+++| .+..+++++|+.|-.+|+++|+.+...+...+-..++ ...+.++.+.++|++++...
T Consensus 793 d~~le~~~~~~~~ii~~~r~~r~~~~i~~~~pl~~~~v~~~~---~~~~~~~~~~~~i~~~~nv~ 854 (975)
T PRK06039 793 DEELEEAMDLVREIVSLGRSARKKAGIKVRQPLSKITVAEDE---EVAEALERYEDLIKDELNVK 854 (975)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccceEEEecCH---HHHHHHHHHHHHHHHHhCcc
Confidence 4555 3467999999999999999999999988653332222 35678899999999887653
Done!